Query 024346
Match_columns 269
No_of_seqs 143 out of 291
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3114 Uncharacterized conser 100.0 6.6E-54 1.4E-58 390.4 20.1 261 4-269 2-277 (290)
2 KOG2946 Uncharacterized conser 99.7 9.8E-17 2.1E-21 141.3 13.6 151 84-255 68-222 (234)
3 KOG3103 Rab GTPase interacting 99.5 4.4E-13 9.6E-18 119.4 13.5 154 84-262 89-246 (249)
4 COG5080 YIP1 Rab GTPase intera 99.3 6.4E-12 1.4E-16 110.3 7.6 151 85-260 67-221 (227)
5 PF03878 YIF1: YIF1; InterPro 99.3 5.8E-11 1.3E-15 107.4 12.5 163 64-239 24-200 (240)
6 PF04893 Yip1: Yip1 domain; I 99.2 6.8E-10 1.5E-14 92.5 13.8 155 83-246 1-159 (172)
7 KOG3094 Predicted membrane pro 98.8 1.5E-07 3.2E-12 85.4 13.8 163 64-240 71-248 (284)
8 COG5197 Predicted membrane pro 98.6 1.5E-06 3.2E-11 77.4 13.1 153 72-239 76-244 (284)
9 PF06930 DUF1282: Protein of u 96.5 0.11 2.5E-06 44.2 14.1 80 162-241 66-149 (170)
10 PF10348 DUF2427: Domain of un 76.5 12 0.00025 29.9 6.6 83 156-265 18-104 (105)
11 PF08006 DUF1700: Protein of u 53.4 1.4E+02 0.0031 25.3 9.5 20 75-94 25-50 (181)
12 PRK10133 L-fucose transporter; 30.4 5E+02 0.011 24.9 12.5 29 112-140 21-49 (438)
13 PF05924 SAMP: SAMP Motif; In 29.9 41 0.00089 19.1 1.5 18 86-103 1-18 (20)
14 PF00432 Prenyltrans: Prenyltr 27.8 1.2E+02 0.0025 19.7 3.7 41 86-127 2-42 (44)
15 PF10716 NdhL: NADH dehydrogen 27.7 1.7E+02 0.0037 22.4 5.0 49 160-209 21-69 (81)
16 COG0805 TatC Sec-independent p 23.3 3.6E+02 0.0078 24.9 7.3 69 114-182 66-144 (255)
17 KOG4783 Uncharacterized conser 22.7 3E+02 0.0065 21.9 5.7 19 247-265 69-87 (102)
No 1
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.6e-54 Score=390.44 Aligned_cols=261 Identities=30% Similarity=0.461 Sum_probs=208.2
Q ss_pred CCCCCCCCCCCCCcCcccCCccccccccCC------CCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCccceeeee
Q 024346 4 SYNNLPSSHLLGSVPAVVSEEKHATSYEAP------EATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSIS 77 (269)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~ 77 (269)
++|-++.+..+|++|+.+++.+.+.....+ .++..+-++..+. .++.+.+..++...|||. +.+-++|+++
T Consensus 2 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~G~~~~~~~~--~~~~~~~~~~~~~~sqq~-~~~~~~~ti~ 78 (290)
T KOG3114|consen 2 NLTFLDFDDVSGGFEDNPDAGGPNVIDTEYDPSARSGSTVGGGSDEYNE--QGGFDDSKATWLLQSQQV-SDQLSFFTIE 78 (290)
T ss_pred CcchhhccccccccccCCCCCCCcccCCCCCCccCcCCcCCCCcccccc--cccccCCCcccccccccc-cCCcccccHH
Confidence 467788889999999998777644222111 1111111111100 122222223333233333 3334899999
Q ss_pred cccccccCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeecee
Q 024346 78 SYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFV 157 (269)
Q Consensus 78 yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l 157 (269)
||||||||||.||++||++||+|+ +.+.+.++.|||||||||||+||||++++++|+.+||.+.... .++|.|||+++
T Consensus 79 yyq~fFdVDt~qV~~Rl~~SliP~-~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~-g~~~g~~f~~v 156 (290)
T KOG3114|consen 79 YYQPFFDVDTAQVRKRLKESLIPR-NYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLK-GTAYGYDFGLV 156 (290)
T ss_pred hhccccCCCHHHHHHHHHHhcCCc-cccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhcccc-ceeeecccchH
Confidence 999999999999999999999994 3356778999999999999999999999999999999987543 33699999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024346 158 NVAACTVYGYAIVVPLAYYFLLQYMGS-----SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFV 232 (269)
Q Consensus 158 ~~a~~~vy~Y~~lvPl~l~~~~k~~~~-----~~sl~~liclYGYSl~~~ipvsiL~~ip~~~lrWi~v~~~~~~S~~fl 232 (269)
++|++.||+|++++|+++|.+++|++. ..++.|++|+||||+++|+|..+++++|..++||++++.++..|+.++
T Consensus 157 ~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wvl~~~~~~~S~~~L 236 (290)
T KOG3114|consen 157 TSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWVLVGTALGLSGTFL 236 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999872 368999999999999999999899999999999999999999999999
Q ss_pred HHhhccccc-CC---ceeehHHHHHHHHHHHHHHHHHhcCC
Q 024346 233 AFNLKSYME-GN---DLTVLVVASFCLQMALAIFIKVWFFP 269 (269)
Q Consensus 233 ~~~L~~~i~-~~---k~~l~v~~i~~lh~~lal~~K~~FF~ 269 (269)
..++++..+ .. +..+.++.++++|+++|+++|+|||+
T Consensus 237 ~~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~~~~lyfF~ 277 (290)
T KOG3114|consen 237 AGTLWPAVRLDGILHFAFLLIVEIVLLHLLLALGFKLYFFD 277 (290)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhccceeEEec
Confidence 999999876 22 34567788899999999999999995
No 2
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=9.8e-17 Score=141.26 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=122.0
Q ss_pred cCChHHHHHHhhhccccCCCccc--cccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhh
Q 024346 84 NVDTDIVINRLFSSLHPLSGDFF--SKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAA 161 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~P~~~~f~--~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~ 161 (269)
+-|-.+|..|+++++.|..- +. .+..++||||||+-+|+-+.+++..++. . ++ . --+
T Consensus 68 krD~~~I~~kl~~Vl~P~py-~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~-------~---~~---~-------~vF 126 (234)
T KOG2946|consen 68 KRDLRAIGSKLKHVLYPHPY-FEDKGQLLRDWDLWGPLFFCVFLALILSLSGS-------V---KS---A-------SVF 126 (234)
T ss_pred HHHHHHHHhceEEEEccCCC-cccccceeecccccchhHHHHHHHHHHHhhcC-------c---cc---c-------hhH
Confidence 45888999999999999731 11 2357789999999999999888886653 1 11 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHH-Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024346 162 CTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTS-FLLLI-PIELLRWIIILLAGTTSSCFVAFNLKSY 239 (269)
Q Consensus 162 ~~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvs-iL~~i-p~~~lrWi~v~~~~~~S~~fl~~~L~~~ 239 (269)
+.+|..+|.+.++++++.|.+|++.+++|.+|+.|||++|....+ +.|.. +..++|.++..+|.+||++.-...+...
T Consensus 127 s~vf~i~wfG~~vvtln~kLLGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~ 206 (234)
T KOG2946|consen 127 AVVFAILWFGAVVVTLNIKLLGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSIS 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 678999999999999999999999999999999999999999996 56653 6788999999999999999888888877
Q ss_pred ccCCceeehHHHHHHH
Q 024346 240 MEGNDLTVLVVASFCL 255 (269)
Q Consensus 240 i~~~k~~l~v~~i~~l 255 (269)
..+.||.+++-.++.+
T Consensus 207 ~~~~kk~LavYPvFL~ 222 (234)
T KOG2946|consen 207 QLPRKKLLAVYPVFLF 222 (234)
T ss_pred ccccccceehhhHHHH
Confidence 7777887766555544
No 3
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.4e-13 Score=119.40 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=121.5
Q ss_pred cCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhHH
Q 024346 84 NVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACT 163 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~ 163 (269)
++|.+++++|.+.+|.|+|..- ..+.+++||+||+-.|..+...+...|. - .|. .
T Consensus 89 gInf~hI~~KT~~VLnP~r~~~-q~i~~d~DlaGPlvf~L~f~~flLl~gK---------------i--~Fg-------y 143 (249)
T KOG3103|consen 89 GINFDHIKQKTRAVLNPFRSAD-QSIMKDTDLAGPLVFCLLFGLFLLLAGK---------------I--HFG-------Y 143 (249)
T ss_pred CCCHHHHHHHHhheecccccCc-eEEecCcccccchHHHHHHHHHHHhcCc---------------e--EEE-------E
Confidence 6899999999999999988622 3467899999999888887766554441 1 232 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHhhhhhHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024346 164 VYGYAIVVPLAYYFLLQYMG-SSASLVRFWCLWGYSLFIFVVTSFLLLI-P-IELLRWIIILLAGTTSSCFVAFNLKSYM 240 (269)
Q Consensus 164 vy~Y~~lvPl~l~~~~k~~~-~~~sl~~liclYGYSl~~~ipvsiL~~i-p-~~~lrWi~v~~~~~~S~~fl~~~L~~~i 240 (269)
|||.+.++.+-++.+++.++ .+.++.+..++.|||+.|.+..|.+.++ + ...++.++.+++.+||++.....+.+.+
T Consensus 144 Iygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al 223 (249)
T KOG3103|consen 144 IYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL 223 (249)
T ss_pred EeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888899999999999998 6789999999999999999999998864 4 3578999999999999988877777766
Q ss_pred c-CCceeehHHHHHHHHHHHHHH
Q 024346 241 E-GNDLTVLVVASFCLQMALAIF 262 (269)
Q Consensus 241 ~-~~k~~l~v~~i~~lh~~lal~ 262 (269)
+ ++++.++.=.++.+--+|++.
T Consensus 224 ~~~~~rlLiaYp~~l~Y~~Fall 246 (249)
T KOG3103|consen 224 SMENQRLLVAYPCALLYGVFALI 246 (249)
T ss_pred hccccchhhhhHHHHHHhhheeE
Confidence 6 455555544666666666554
No 4
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=99.29 E-value=6.4e-12 Score=110.25 Aligned_cols=151 Identities=23% Similarity=0.294 Sum_probs=107.0
Q ss_pred CChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhHHH
Q 024346 85 VDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTV 164 (269)
Q Consensus 85 VDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~v 164 (269)
.+-..+++|...++.|++..-+ .+.+|+|||||+-.+.. +.++++ ...+ + .| +.+
T Consensus 67 i~F~~i~~ks~~vl~p~~~~~~-~i~~d~DL~gPliF~lL--~sLfLs--------la~~-s------hF-------gyi 121 (227)
T COG5080 67 INFGHIKSKSDDVLGPFDNKAF-DILADCDLWGPLIFILL--YSLFLS--------LAGK-S------HF-------GYI 121 (227)
T ss_pred ccccccccccceeeecccccch-hhhhcccccccHHHHHH--HHHHHH--------hccc-c------ee-------ehh
Confidence 3445678888888999775222 35789999999765543 333332 2211 1 24 348
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHhhhhhHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 024346 165 YGYAIVVPLAYYFLLQYMG-SSASLVRFWCLWGYSLFIFVVTSFLLLIP--IELLRWIIILLAGTTSSCFVAFNLKSYME 241 (269)
Q Consensus 165 y~Y~~lvPl~l~~~~k~~~-~~~sl~~liclYGYSl~~~ipvsiL~~ip--~~~lrWi~v~~~~~~S~~fl~~~L~~~i~ 241 (269)
|+..|.+-+.+.+++|.++ .+.+++|.+|+.|||++|.+..|++|.+. +.+.--++++++..||.+...-.+++.++
T Consensus 122 y~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~ 201 (227)
T COG5080 122 YGISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQ 201 (227)
T ss_pred hHHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 67899999999999999999999999863 33444455566889999888888877766
Q ss_pred -CCceeehHHHHHHHHHHHH
Q 024346 242 -GNDLTVLVVASFCLQMALA 260 (269)
Q Consensus 242 -~~k~~l~v~~i~~lh~~la 260 (269)
++|+.+++-.+...--+++
T Consensus 202 l~n~~llv~Ypl~LFY~~fa 221 (227)
T COG5080 202 LSNKRLLVVYPLLLFYNVFA 221 (227)
T ss_pred hhhHHHHHHHHHHHHHhhhe
Confidence 5566555444333333333
No 5
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=99.26 E-value=5.8e-11 Score=107.44 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=116.2
Q ss_pred cCCCCCccceeeeecccccccCChHHHHHHhhhccccCCCccc------------cccCCCCCchHHHHHHHHHHHHHHH
Q 024346 64 QQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFF------------SKIDANPDLYGLIWISTTLVFMLAS 131 (269)
Q Consensus 64 ~~~~~~~~~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~------------~~~~~~pDLYGP~WI~~TLif~l~i 131 (269)
|..+++..++.+.+..|.|||||++-|.+||+--+.|+..... +.....||||=|++-..|-|.+.+.
T Consensus 24 ~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~ 103 (240)
T PF03878_consen 24 EYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGL 103 (240)
T ss_pred HHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHH
Confidence 3335566778888889999999999999999999999754211 1112359999999999999998776
Q ss_pred hhhHHHHHhHhccCCCcceeeeeceehhhhHHHHHHHHHHHHHHHHHHHHhCC--CccHHHHHHHHhhhhhHHHHHHHhh
Q 024346 132 FGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGS--SASLVRFWCLWGYSLFIFVVTSFLL 209 (269)
Q Consensus 132 ~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~vy~Y~~lvPl~l~~~~k~~~~--~~sl~~liclYGYSl~~~ipvsiL~ 209 (269)
..++ + + + ++. +.+...++-..+..++=-+++++.+..++. +.++.|++|..||.-+.-|...+..
T Consensus 104 ~~G~-----~---g-~--F~P--e~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~ 170 (240)
T PF03878_consen 104 ILGL-----Q---G-R--FSP--ELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLAS 170 (240)
T ss_pred HHHh-----c---C-C--CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHH
Confidence 5432 1 1 1 333 334444444445555545566666666666 6799999999999965555444444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024346 210 LIPIELLRWIIILLAGTTSSCFVAFNLKSY 239 (269)
Q Consensus 210 ~ip~~~lrWi~v~~~~~~S~~fl~~~L~~~ 239 (269)
.+-..+.-|+..+...+..+.|+.+.++..
T Consensus 171 ~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~ 200 (240)
T PF03878_consen 171 LLFGSWVYYIALLYTSFANAFFLLRSLKRV 200 (240)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457889999999999999999998764
No 6
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=99.18 E-value=6.8e-10 Score=92.50 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=109.6
Q ss_pred ccCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhH
Q 024346 83 FNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAAC 162 (269)
Q Consensus 83 FdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~ 162 (269)
+.+|+++..+|+++.-. .++++|+|+++|+.+++++.+....+...++.+........+..-......+..
T Consensus 1 vl~~P~~~f~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (172)
T PF04893_consen 1 VLFSPREFFRRLRESPR---------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFI 71 (172)
T ss_pred CccCHHHHHHHHHhccc---------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 35788888888875433 245899999999999999999988777666654311100001111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHhhccc
Q 024346 163 TVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIEL---LRWIIILLAGTTSSCFVAFNLKSY 239 (269)
Q Consensus 163 ~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~---lrWi~v~~~~~~S~~fl~~~L~~~ 239 (269)
....-.++.+.++|.+.|.+|++.++.|.+|++|||.+|.+...+++.+.... +...+..++.+|+...+..-+++.
T Consensus 72 ~~~i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~ 151 (172)
T PF04893_consen 72 IILIGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREV 151 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23356677889999999999999999999999999999999988888764332 345677888999999888888887
Q ss_pred cc-CCcee
Q 024346 240 ME-GNDLT 246 (269)
Q Consensus 240 i~-~~k~~ 246 (269)
-+ +.+|.
T Consensus 152 ~~~~~~ka 159 (172)
T PF04893_consen 152 HRLSRGKA 159 (172)
T ss_pred hCCChhHH
Confidence 76 33443
No 7
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=98.78 E-value=1.5e-07 Score=85.36 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=105.3
Q ss_pred cCCCCCccceeeeecccccccCChHHHHHHhhhccccCCC-ccc---c--------ccCCCCCchHHHHHHHHHHHHHHH
Q 024346 64 QQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSG-DFF---S--------KIDANPDLYGLIWISTTLVFMLAS 131 (269)
Q Consensus 64 ~~~~~~~~~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~-~f~---~--------~~~~~pDLYGP~WI~~TLif~l~i 131 (269)
|..+++..++.+....+-||+||+.-|.+||+-.++|+.. +.. | .....||||=|++--+|-|.+...
T Consensus 71 E~v~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl 150 (284)
T KOG3094|consen 71 EYVEKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGL 150 (284)
T ss_pred HHHHHHhhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHH
Confidence 3345666778888888999999999999999999999753 211 1 123469999999999999988775
Q ss_pred hhhHHHHHhHhccCCCcceeeeeceehhhhHHHHHHHHHHHHHHHHHHHH-hCC--CccHHHHHHHHhhhhhHHHHHHHh
Q 024346 132 FGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQY-MGS--SASLVRFWCLWGYSLFIFVVTSFL 208 (269)
Q Consensus 132 ~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~vy~Y~~lvPl~l~~~~k~-~~~--~~sl~~liclYGYSl~~~ipvsiL 208 (269)
.-.+ ++ + ++.+- +..-++--..+ +++=+++..+..| ++. ..+.++++|.-||..+..|.+.+.
T Consensus 151 ~lGl-----qg----~--FsPE~--Lg~~~s~al~~-v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~ 216 (284)
T KOG3094|consen 151 LLGL-----QG----R--FSPEA--LGILASKALAW-VILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLT 216 (284)
T ss_pred Hhhh-----cc----C--CCHHH--HHHHHHHHHHH-HHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHh
Confidence 5432 11 1 22221 21111111112 2233344444444 343 679999999999998777776666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024346 209 LLIPIELLRWIIILLAGTTSSCFVAFNLKSYM 240 (269)
Q Consensus 209 ~~ip~~~lrWi~v~~~~~~S~~fl~~~L~~~i 240 (269)
-++-..+...++...-.+.-+.|+++.++..+
T Consensus 217 k~~~~~~~yyi~~~yt~~a~gvFLlRSlK~~l 248 (284)
T KOG3094|consen 217 KLLFGPYGYYIALAYTYLAFGVFLLRSLKRAL 248 (284)
T ss_pred hheecchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433345555555555666778999887654
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=98.55 E-value=1.5e-06 Score=77.43 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=97.9
Q ss_pred ceeeeecccccccCChHHHHHHhhhccccCCCcccc------------ccCCCCCchHHHHHHHHHHHHHHHhhhHHHHH
Q 024346 72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFS------------KIDANPDLYGLIWISTTLVFMLASFGNCATYL 139 (269)
Q Consensus 72 ~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~------------~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l 139 (269)
.-.+..-.+-|||||++-|.+|++--++|+.+.... .....||+|=|.+--+|-|.+...-.++.
T Consensus 76 ~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~--- 152 (284)
T COG5197 76 NAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLK--- 152 (284)
T ss_pred ccccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcc---
Confidence 345777889999999999999999999997652211 12346999999999999999887654431
Q ss_pred hHhccCCCcceee-eeceehhhhHHHHHHHHHHHHHHHHHHHH---hCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHH
Q 024346 140 MQKYTNSSASWSF-DVSFVNVAACTVYGYAIVVPLAYYFLLQY---MGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIEL 215 (269)
Q Consensus 140 ~~~~~~~~~~~~y-df~~l~~a~~~vy~Y~~lvPl~l~~~~k~---~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~ 215 (269)
++ ++. |+......+. .. .++-+++.-+.-| .+...++++++|.-||..++.|...++-.+...|
T Consensus 153 -----g~---F~PE~lg~~~s~~~---a~-v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~~Mp~ 220 (284)
T COG5197 153 -----GS---FNPEDLGYKLSSTL---AF-VCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPF 220 (284)
T ss_pred -----cC---CCHHHhhHHHHHHH---HH-HHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhccccH
Confidence 10 121 1221111111 11 1122222222222 2344689999999999988888777776655445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 024346 216 LRWIIILLAGTTSSCFVAFNLKSY 239 (269)
Q Consensus 216 lrWi~v~~~~~~S~~fl~~~L~~~ 239 (269)
..-++...-.+.-+.|+.+.++-.
T Consensus 221 v~~i~~~Ylyiaf~vFLlRSlK~~ 244 (284)
T COG5197 221 VLNILIFYLYIAFGVFLLRSLKFN 244 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666667778888888643
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=96.54 E-value=0.11 Score=44.24 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=60.8
Q ss_pred HHHHHHHHH-HHHHHHH---HHHHhCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024346 162 CTVYGYAIV-VPLAYYF---LLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLK 237 (269)
Q Consensus 162 ~~vy~Y~~l-vPl~l~~---~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~lrWi~v~~~~~~S~~fl~~~L~ 237 (269)
..+.+|.++ +.+.-++ +.|..+++.++-|..-..||+.+|.....++..+|..++--....++..|+...++.-+.
T Consensus 66 ~~~~~~~~~gv~i~a~~i~~~~~~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~~l~~~~~~~~~~~~~~Lly~Gv~ 145 (170)
T PF06930_consen 66 IAVIFYIFGGVFIMAYLIHWMMKTFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPSLWLTLLVGLIALIYSVYLLYLGVP 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 3333333 445567788999999999999999999999999988777777778888999999998887
Q ss_pred cccc
Q 024346 238 SYME 241 (269)
Q Consensus 238 ~~i~ 241 (269)
...+
T Consensus 146 ~~~~ 149 (170)
T PF06930_consen 146 IFMN 149 (170)
T ss_pred HHhC
Confidence 7765
No 10
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=76.49 E-value=12 Score=29.85 Aligned_cols=83 Identities=12% Similarity=0.207 Sum_probs=45.9
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 024346 156 FVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFN 235 (269)
Q Consensus 156 ~l~~a~~~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~lrWi~v~~~~~~S~~fl~~~ 235 (269)
...+.+....+++++.|+.+-+.. .+++ +-+|...+.+++..+|.+.... +..
T Consensus 18 l~~Hi~lm~la~~il~Pi~lvL~~--~~sr-----------------------~~~~~q~~~~~l~~~g~~~g~~--~~~ 70 (105)
T PF10348_consen 18 LYAHIVLMTLAWVILYPIGLVLGN--ARSR-----------------------WHLPVQTVFLVLMILGLFLGSV--YNG 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--ccch-----------------------HHHHHHHHHHHHHHHHHHHHHH--Hhc
Confidence 345666666666666777665422 1211 1234455555555555554443 223
Q ss_pred hcccc-cCC---ceeehHHHHHHHHHHHHHHHHH
Q 024346 236 LKSYM-EGN---DLTVLVVASFCLQMALAIFIKV 265 (269)
Q Consensus 236 L~~~i-~~~---k~~l~v~~i~~lh~~lal~~K~ 265 (269)
-.+.+ +++ |...++....++|.++++..|+
T Consensus 71 ~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~~~~ 104 (105)
T PF10348_consen 71 STPDLYPNNAHGKMGWILFVLMIVQVILGVILKL 104 (105)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334 232 3345666778899999999885
No 11
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=53.41 E-value=1.4e+02 Score=25.34 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=14.6
Q ss_pred eeecccccccC------ChHHHHHHh
Q 024346 75 SISSYTQYFNV------DTDIVINRL 94 (269)
Q Consensus 75 si~yY~~yFdV------DT~~V~~Rl 94 (269)
-++||+.|||- +.+|+.+++
T Consensus 25 ~l~~Y~e~f~d~~~~G~sEeeii~~L 50 (181)
T PF08006_consen 25 ILEYYEEYFDDAGEEGKSEEEIIAEL 50 (181)
T ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHc
Confidence 47799999983 456666665
No 12
>PRK10133 L-fucose transporter; Provisional
Probab=30.43 E-value=5e+02 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhHHHHHh
Q 024346 112 NPDLYGLIWISTTLVFMLASFGNCATYLM 140 (269)
Q Consensus 112 ~pDLYGP~WI~~TLif~l~i~~nl~~~l~ 140 (269)
+++-+.|++..+++-|+.++..++.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILL 49 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999888887776555554
No 13
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=29.86 E-value=41 Score=19.11 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=11.3
Q ss_pred ChHHHHHHhhhccccCCC
Q 024346 86 DTDIVINRLFSSLHPLSG 103 (269)
Q Consensus 86 DT~~V~~Rl~~sl~P~~~ 103 (269)
|.+|++++++.|-+|.+.
T Consensus 1 d~deiL~~CI~sAmPk~~ 18 (20)
T PF05924_consen 1 DEDEILQECIGSAMPKRR 18 (20)
T ss_dssp --HHHHHHHHHCTS----
T ss_pred CHHHHHHHHHHHhccccc
Confidence 346999999999999763
No 14
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=27.77 E-value=1.2e+02 Score=19.71 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=27.2
Q ss_pred ChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHH
Q 024346 86 DTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVF 127 (269)
Q Consensus 86 DT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif 127 (269)
|.+++.+=|...-.|- +.|.......||++.-+|-..+|.+
T Consensus 2 d~~~~~~~l~~~Q~~d-GGf~~~~~~~~d~~~t~~~~~~L~l 42 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPD-GGFGGRPGGESDTCYTYCALAALSL 42 (44)
T ss_dssp HHHHHHHHHHHTBBTT-SSBBSSTTSSBBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCC-CCCCCCCCCCCChHHHHHHHHHHHH
Confidence 3444555555554543 3466555678999999999998875
No 15
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=27.65 E-value=1.7e+02 Score=22.44 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHHHhh
Q 024346 160 AACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLL 209 (269)
Q Consensus 160 a~~~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~ 209 (269)
-+.+-..|..++|++++.=++..=...+.+|-.+.||- .+.|-|..++.
T Consensus 21 y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~l-vF~FFPGllL~ 69 (81)
T PF10716_consen 21 YAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFL-VFLFFPGLLLL 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence 34566789999999987766543334688999999985 45566665554
No 16
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=23.32 E-value=3.6e+02 Score=24.89 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHHHHhhhHH-------HHHhHhccCCCcceeeee---ceehhhhHHHHHHHHHHHHHHHHHHHHh
Q 024346 114 DLYGLIWISTTLVFMLASFGNCA-------TYLMQKYTNSSASWSFDV---SFVNVAACTVYGYAIVVPLAYYFLLQYM 182 (269)
Q Consensus 114 DLYGP~WI~~TLif~l~i~~nl~-------~~l~~~~~~~~~~~~ydf---~~l~~a~~~vy~Y~~lvPl~l~~~~k~~ 182 (269)
+...|+++..-+.+..++.-.+- .++...-..++..+..-+ ..+.++.+..|+|-++.|+++++...+-
T Consensus 66 ~p~e~~~~~ik~a~~~gl~~a~P~i~yq~w~FiaPGLy~~Err~~~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~~~ 144 (255)
T COG0805 66 SPTEPFFTYIKLALFAGLLLALPVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLSFA 144 (255)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999988888777654332 222211111110011001 3345667788899999999999999875
No 17
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.71 E-value=3e+02 Score=21.88 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=14.6
Q ss_pred ehHHHHHHHHHHHHHHHHH
Q 024346 247 VLVVASFCLQMALAIFIKV 265 (269)
Q Consensus 247 l~v~~i~~lh~~lal~~K~ 265 (269)
-.+++++++|+++++.+-.
T Consensus 69 SaI~aVVavHvalglyiy~ 87 (102)
T KOG4783|consen 69 SAICAVVAVHVALGLYIYR 87 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788899999887644
Done!