Query 024346
Match_columns 269
No_of_seqs 143 out of 291
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nrp_R Receptor based peptide 22.9 15 0.0005 20.8 -0.4 10 111-120 9-19 (26)
2 1nro_R Receptor based peptide 22.3 17 0.00057 20.7 -0.2 10 111-120 9-19 (27)
3 2xvc_A ESCRT-III, SSO0910; cel 17.0 37 0.0013 23.4 0.6 25 71-95 23-47 (59)
4 1wi9_A Protein C20ORF116 homol 12.1 93 0.0032 22.3 1.6 27 72-98 20-46 (72)
5 4grv_A Neurotensin receptor ty 12.1 8E+02 0.027 22.3 10.5 32 109-140 23-56 (510)
6 2wsc_H Photosystem I reaction 11.4 63 0.0022 25.9 0.5 11 107-117 64-74 (144)
7 3ech_C 25-MER fragment of prot 9.6 37 0.0013 19.1 -1.0 6 112-117 16-21 (25)
8 2kih_A Matrix protein 2; S31N, 9.2 2.7E+02 0.0092 17.6 2.8 17 251-267 15-31 (43)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 7.6 66 0.0023 23.0 -0.7 35 79-116 39-73 (77)
10 2knc_A Integrin alpha-IIB; tra 6.8 4.1E+02 0.014 17.7 3.1 15 255-269 26-40 (54)
No 1
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=22.93 E-value=15 Score=20.83 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=7.6
Q ss_pred CCC-CchHHHH
Q 024346 111 ANP-DLYGLIW 120 (269)
Q Consensus 111 ~~p-DLYGP~W 120 (269)
+|| |-|-|||
T Consensus 9 rnpndkyepfw 19 (26)
T 1nrp_R 9 RNPNDKYEPFW 19 (26)
T ss_pred cCCCcccCccc
Confidence 344 8899999
No 2
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=22.25 E-value=17 Score=20.74 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=7.7
Q ss_pred CCC-CchHHHH
Q 024346 111 ANP-DLYGLIW 120 (269)
Q Consensus 111 ~~p-DLYGP~W 120 (269)
+|| |-|-|||
T Consensus 9 rnpndkyepfw 19 (27)
T 1nro_R 9 RNPNDKYEPFW 19 (27)
T ss_pred cCCCcccCccc
Confidence 344 8899999
No 3
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=16.96 E-value=37 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.9
Q ss_pred cceeeeecccccccCChHHHHHHhh
Q 024346 71 KGFFSISSYTQYFNVDTDIVINRLF 95 (269)
Q Consensus 71 ~~~~si~yY~~yFdVDT~~V~~Rl~ 95 (269)
.|+..+++....|.|+-++|++=|+
T Consensus 23 GGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 23 GGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp TSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred CCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 5899999999999999999986554
No 4
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=12.13 E-value=93 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred ceeeeecccccccCChHHHHHHhhhcc
Q 024346 72 GFFSISSYTQYFNVDTDIVINRLFSSL 98 (269)
Q Consensus 72 ~~~si~yY~~yFdVDT~~V~~Rl~~sl 98 (269)
....++-...=|++.|+++.+||..-.
T Consensus 20 Kvv~LedLA~~F~l~t~~~i~RI~~Le 46 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLRTQDAINRIQDLL 46 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHhCCChHHHHHHHHHHH
Confidence 456777888889999999999998643
No 5
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=12.12 E-value=8e+02 Score=22.25 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=22.7
Q ss_pred cCCCCCchHHHHHHH--HHHHHHHHhhhHHHHHh
Q 024346 109 IDANPDLYGLIWIST--TLVFMLASFGNCATYLM 140 (269)
Q Consensus 109 ~~~~pDLYGP~WI~~--TLif~l~i~~nl~~~l~ 140 (269)
.+.+.|+|.-+.+++ .+|+++++.||+.-.+.
T Consensus 23 ~~~~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~ 56 (510)
T 4grv_A 23 LDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFT 56 (510)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 355789999887765 56777788898655443
No 6
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=11.38 E-value=63 Score=25.88 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.6
Q ss_pred cccCCCCCchH
Q 024346 107 SKIDANPDLYG 117 (269)
Q Consensus 107 ~~~~~~pDLYG 117 (269)
++.-++|||||
T Consensus 64 ~nTTG~WDlYG 74 (144)
T 2wsc_H 64 ANTTGQWDVYG 74 (144)
T ss_dssp CCSSCTTSSCC
T ss_pred ccccccceecc
Confidence 34567899999
No 7
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=9.63 E-value=37 Score=19.05 Aligned_cols=6 Identities=67% Similarity=0.988 Sum_probs=4.9
Q ss_pred CCCchH
Q 024346 112 NPDLYG 117 (269)
Q Consensus 112 ~pDLYG 117 (269)
.|||||
T Consensus 16 awdly~ 21 (25)
T 3ech_C 16 AWDLYG 21 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 589987
No 8
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=9.17 E-value=2.7e+02 Score=17.61 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 024346 251 ASFCLQMALAIFIKVWF 267 (269)
Q Consensus 251 ~i~~lh~~lal~~K~~F 267 (269)
.+..+|+.+.+.=+++|
T Consensus 15 iiGIlHLiLwildRlff 31 (43)
T 2kih_A 15 IIGILHLILWILDRLFF 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45779999998877765
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=7.63 E-value=66 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.350 Sum_probs=23.7
Q ss_pred ccccccCChHHHHHHhhhccccCCCccccccCCCCCch
Q 024346 79 YTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLY 116 (269)
Q Consensus 79 Y~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLY 116 (269)
.+.-|..+..++++||-.-+- .++.++..++||.|
T Consensus 39 l~~rF~p~~~~IKk~IE~LIe---reYl~R~~~~~~~y 73 (77)
T 3tdu_C 39 LSSRFKPRVPVIKKCIDILIE---KEYLERVDGEKDTY 73 (77)
T ss_dssp HTTTCCCCHHHHHHHHHHHHH---TTSEEEETTEEEEE
T ss_pred HhCcCCCCHHHHHHHHHHHHh---hhHhhcCCCCCceE
Confidence 456688999998888764332 34666666677776
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.81 E-value=4.1e+02 Score=17.74 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhcCC
Q 024346 255 LQMALAIFIKVWFFP 269 (269)
Q Consensus 255 lh~~lal~~K~~FF~ 269 (269)
+=+...++.|.-||+
T Consensus 26 L~li~~~LwK~GFFk 40 (54)
T 2knc_A 26 LTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCccc
Confidence 444455666777874
Done!