Query 024346
Match_columns 269
No_of_seqs 143 out of 291
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 06:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024346.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024346hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wh8a_ a.35.1.7 (A:) Homeobox 13.9 31 0.0023 25.0 1.4 16 84-99 26-41 (111)
2 d1ldja1 a.4.5.34 (A:687-776) A 11.8 41 0.003 23.0 1.4 37 77-116 50-86 (90)
3 d1iuya_ a.4.5.34 (A:) Cullin-3 11.0 48 0.0035 22.7 1.6 38 76-116 51-88 (92)
4 d1wi9a_ a.4.5.47 (A:) Hypothet 10.9 36 0.0027 22.7 0.8 27 72-98 20-46 (72)
5 d1s7ea2 a.35.1.7 (A:6-85) Hepa 10.4 43 0.0032 22.7 1.1 16 84-99 1-16 (80)
6 d1x2la1 a.35.1.7 (A:9-95) Home 8.7 62 0.0045 22.2 1.4 16 84-99 8-23 (87)
7 d1knva_ c.52.1.7 (A:) Restrict 7.5 85 0.0062 25.9 2.0 37 78-115 108-144 (290)
8 d1wdka2 a.100.1.3 (A:621-715) 7.5 68 0.0049 21.8 1.2 16 84-99 1-16 (95)
9 d1uf5a_ d.160.1.2 (A:) N-carba 7.4 23 0.0016 28.6 -1.8 10 110-119 291-300 (303)
10 d2axtm1 f.23.35.1 (M:1-36) Pho 7.0 1.1E+02 0.0081 17.4 1.8 14 198-211 12-25 (36)
No 1
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.90 E-value=31 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.6
Q ss_pred cCChHHHHHHhhhccc
Q 024346 84 NVDTDIVINRLFSSLH 99 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~ 99 (269)
++||.++.+||+.-|.
T Consensus 26 eLDT~~Ia~~v~~~L~ 41 (111)
T d1wh8a_ 26 ELDTYSITKRVKEVLT 41 (111)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5999999999999885
No 2
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.83 E-value=41 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.348 Sum_probs=25.3
Q ss_pred ecccccccCChHHHHHHhhhccccCCCccccccCCCCCch
Q 024346 77 SSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLY 116 (269)
Q Consensus 77 ~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLY 116 (269)
+..++-|.++..++++||-. |+- .+|.++..+++|.|
T Consensus 50 ~~l~~~F~p~~~~iK~~Ie~-LIe--reYi~R~~~~~~~y 86 (90)
T d1ldja1 50 TQLSSRFKPRVPVIKKCIDI-LIE--KEYLERVDGEKDTY 86 (90)
T ss_dssp HHHTTTCCCCHHHHHHHHHH-HHH--TTSEEECSSSTTEE
T ss_pred HHHhccCCCCHHHHHHHHHH-HHh--hHHHhcCCCCCcee
Confidence 44567799999998888753 331 34666666678776
No 3
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.05 E-value=48 Score=22.65 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=26.4
Q ss_pred eecccccccCChHHHHHHhhhccccCCCccccccCCCCCch
Q 024346 76 ISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLY 116 (269)
Q Consensus 76 i~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLY 116 (269)
++-.++-|.++..+++++|-.-+- .+|.++..+++|.|
T Consensus 51 ~~~l~~~F~p~~~~iK~~Ie~LIe---keYi~R~~~d~~~y 88 (92)
T d1iuya_ 51 TQQLKARFLPSPVVIKKRIEGLIE---REYLARTPEDRKVY 88 (92)
T ss_dssp HHHTCSSCCCCHHHHHHHHHHHHH---TTSEEECSSCSSEE
T ss_pred HHHHhCcCCCCHHHHHHHHHHHHh---hhhhhcCCCCCCee
Confidence 355678899999998888754332 34666656678776
No 4
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.95 E-value=36 Score=22.71 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred ceeeeecccccccCChHHHHHHhhhcc
Q 024346 72 GFFSISSYTQYFNVDTDIVINRLFSSL 98 (269)
Q Consensus 72 ~~~si~yY~~yFdVDT~~V~~Rl~~sl 98 (269)
.+-.++-...-|++.|+++.+||..-.
T Consensus 20 Kvv~LedLAa~F~lktqd~i~RIq~Le 46 (72)
T d1wi9a_ 20 KVVLLEDLAFQMGLRTQDAINRIQDLL 46 (72)
T ss_dssp SEECHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CEeeHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456788888899999999999997643
No 5
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.36 E-value=43 Score=22.68 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.5
Q ss_pred cCChHHHHHHhhhccc
Q 024346 84 NVDTDIVINRLFSSLH 99 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~ 99 (269)
++||.++.+|++..|.
T Consensus 1 eldT~~I~~~i~~eL~ 16 (80)
T d1s7ea2 1 EINTKEVAQRITTELK 16 (80)
T ss_dssp CCCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5899999999999885
No 6
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=62 Score=22.20 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.5
Q ss_pred cCChHHHHHHhhhccc
Q 024346 84 NVDTDIVINRLFSSLH 99 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~ 99 (269)
++||.++.+|++..|.
T Consensus 8 ~ldT~~i~~~v~~~L~ 23 (87)
T d1x2la1 8 QLDTAEIAFQVKEQLL 23 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999999885
No 7
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.52 E-value=85 Score=25.87 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=31.1
Q ss_pred cccccccCChHHHHHHhhhccccCCCccccccCCCCCc
Q 024346 78 SYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDL 115 (269)
Q Consensus 78 yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDL 115 (269)
-+++-|+=.+.+++..+.+.+.|+++. .+.+..|||+
T Consensus 108 D~~~L~~~e~~e~i~~~~a~l~~~k~~-v~LiTSnPD~ 144 (290)
T d1knva_ 108 DFRKIFDNETREKLHQLEKSLLTHKQQ-VRLITSNPDL 144 (290)
T ss_dssp CGGGGBCHHHHHHHHHHHHHHHSSSSC-CBCCCCCCSE
T ss_pred cHHHHhhHHHHHHHHHHHHhhhhhccc-cccccCCCce
Confidence 467888889999999999999998764 4556789998
No 8
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=7.47 E-value=68 Score=21.77 Aligned_cols=16 Identities=25% Similarity=0.408 Sum_probs=13.5
Q ss_pred cCChHHHHHHhhhccc
Q 024346 84 NVDTDIVINRLFSSLH 99 (269)
Q Consensus 84 dVDT~~V~~Rl~~sl~ 99 (269)
|++.+||.+|+...++
T Consensus 1 ~~~d~~IvnRll~~~~ 16 (95)
T d1wdka2 1 DVTDEDIINWMMIPLC 16 (95)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6789999999998764
No 9
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=7.40 E-value=23 Score=28.56 Aligned_cols=10 Identities=50% Similarity=0.982 Sum_probs=8.1
Q ss_pred CCCCCchHHH
Q 024346 110 DANPDLYGLI 119 (269)
Q Consensus 110 ~~~pDLYGP~ 119 (269)
++.|||||++
T Consensus 291 ~rr~d~y~~~ 300 (303)
T d1uf5a_ 291 HRQPQHYGLI 300 (303)
T ss_dssp HCCGGGCGGG
T ss_pred cCChhhhhHh
Confidence 4689999985
No 10
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.04 E-value=1.1e+02 Score=17.38 Aligned_cols=14 Identities=36% Similarity=0.921 Sum_probs=8.8
Q ss_pred hhhHHHHHHHhhhh
Q 024346 198 SLFIFVVTSFLLLI 211 (269)
Q Consensus 198 Sl~~~ipvsiL~~i 211 (269)
.+++.+|.++|.++
T Consensus 12 ~LFilvPt~FLliL 25 (36)
T d2axtm1 12 ALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46667777766553
Done!