Query 024349
Match_columns 269
No_of_seqs 263 out of 1204
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 6.4E-74 1.4E-78 554.3 23.2 257 3-268 1-258 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 4.3E-64 9.3E-69 481.8 21.8 228 35-268 13-241 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 4.1E-63 8.9E-68 469.5 18.9 183 85-268 2-197 (361)
4 PRK08289 glyceraldehyde-3-phos 100.0 1.3E-62 2.9E-67 477.5 20.3 212 49-268 96-318 (477)
5 PRK07403 glyceraldehyde-3-phos 100.0 3.6E-60 7.8E-65 447.4 18.8 182 86-268 1-183 (337)
6 PTZ00023 glyceraldehyde-3-phos 100.0 1.2E-59 2.6E-64 443.9 19.2 179 85-268 1-181 (337)
7 PRK15425 gapA glyceraldehyde-3 100.0 1.7E-59 3.8E-64 441.9 18.9 177 86-268 2-179 (331)
8 COG0057 GapA Glyceraldehyde-3- 100.0 1.9E-59 4E-64 438.9 18.1 179 86-268 1-181 (335)
9 PRK07729 glyceraldehyde-3-phos 100.0 1.7E-58 3.6E-63 436.8 19.3 180 85-268 1-181 (343)
10 PTZ00353 glycosomal glyceralde 100.0 2.5E-58 5.5E-63 435.4 19.3 178 85-268 1-182 (342)
11 TIGR01534 GAPDH-I glyceraldehy 100.0 5.8E-58 1.2E-62 431.2 18.5 178 88-268 1-181 (327)
12 PLN02272 glyceraldehyde-3-phos 100.0 8.3E-57 1.8E-61 434.0 23.4 178 86-268 85-264 (421)
13 PRK13535 erythrose 4-phosphate 100.0 2.1E-56 4.5E-61 422.0 19.4 179 87-268 2-183 (336)
14 PRK08955 glyceraldehyde-3-phos 100.0 1.8E-55 3.8E-60 415.4 19.3 179 85-268 1-181 (334)
15 PLN02358 glyceraldehyde-3-phos 100.0 2.4E-55 5.1E-60 415.1 19.4 179 85-268 4-185 (338)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.5E-53 3.3E-58 400.9 19.4 178 88-268 1-181 (325)
17 PF00044 Gp_dh_N: Glyceraldehy 100.0 7.9E-51 1.7E-55 345.9 10.8 150 87-240 1-151 (151)
18 smart00846 Gp_dh_N Glyceraldeh 100.0 9.1E-46 2E-50 313.7 15.9 149 87-240 1-149 (149)
19 KOG0657 Glyceraldehyde 3-phosp 100.0 1.1E-43 2.3E-48 324.6 5.9 162 97-268 1-164 (285)
20 TIGR01546 GAPDH-II_archae glyc 100.0 1.7E-37 3.7E-42 293.1 14.9 162 89-268 1-166 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 4.3E-32 9.3E-37 256.5 14.8 163 86-268 1-169 (341)
22 PRK06901 aspartate-semialdehyd 99.9 1.6E-24 3.5E-29 203.7 13.1 150 87-268 4-159 (322)
23 PRK14874 aspartate-semialdehyd 99.9 1.5E-22 3.3E-27 190.6 13.8 151 87-268 2-158 (334)
24 COG0136 Asd Aspartate-semialde 99.9 9.3E-22 2E-26 185.7 11.7 153 87-268 2-162 (334)
25 TIGR01296 asd_B aspartate-semi 99.9 1.9E-21 4.1E-26 184.0 13.4 150 88-268 1-156 (339)
26 TIGR01745 asd_gamma aspartate- 99.9 9.8E-22 2.1E-26 188.0 10.8 153 87-268 1-163 (366)
27 PRK06728 aspartate-semialdehyd 99.8 2.8E-18 6.1E-23 163.4 13.5 153 85-268 4-161 (347)
28 PRK08040 putative semialdehyde 99.8 7.4E-18 1.6E-22 159.9 15.7 153 85-268 3-161 (336)
29 PRK06598 aspartate-semialdehyd 99.8 4.1E-18 9E-23 163.4 11.9 154 87-268 2-164 (369)
30 PRK05671 aspartate-semialdehyd 99.7 2.4E-16 5.3E-21 149.4 13.8 153 86-268 4-160 (336)
31 PLN02383 aspartate semialdehyd 99.7 2.6E-16 5.7E-21 149.6 13.5 154 84-268 5-168 (344)
32 PRK08664 aspartate-semialdehyd 99.6 1.1E-15 2.3E-20 144.9 12.7 163 85-268 2-178 (349)
33 TIGR00978 asd_EA aspartate-sem 99.6 9.3E-16 2E-20 144.9 12.0 162 87-268 1-175 (341)
34 PRK00436 argC N-acetyl-gamma-g 99.5 3.2E-13 7E-18 128.0 13.1 154 85-268 1-181 (343)
35 TIGR01850 argC N-acetyl-gamma- 99.4 1.3E-12 2.8E-17 124.1 11.3 154 87-268 1-181 (346)
36 PRK11863 N-acetyl-gamma-glutam 99.4 4.1E-12 8.9E-17 119.8 10.6 137 85-268 1-145 (313)
37 PLN02968 Probable N-acetyl-gam 99.3 9.3E-12 2E-16 120.1 11.0 155 85-268 37-216 (381)
38 PRK08300 acetaldehyde dehydrog 99.3 9E-12 2E-16 117.0 9.5 154 85-267 3-158 (302)
39 KOG4777 Aspartate-semialdehyde 99.2 6.9E-12 1.5E-16 115.8 4.5 158 88-268 5-182 (361)
40 TIGR01851 argC_other N-acetyl- 99.1 3E-10 6.5E-15 107.2 9.9 137 87-268 2-144 (310)
41 TIGR03215 ac_ald_DH_ac acetald 99.0 1.9E-09 4.2E-14 100.6 10.1 142 87-258 2-144 (285)
42 PF01118 Semialdhyde_dh: Semia 98.7 1.4E-08 3E-13 82.4 4.2 115 88-228 1-119 (121)
43 smart00859 Semialdhyde_dh Semi 97.9 3.9E-05 8.4E-10 61.7 6.3 113 88-227 1-120 (122)
44 PRK13301 putative L-aspartate 97.8 3.6E-05 7.8E-10 71.6 6.1 92 85-207 1-93 (267)
45 COG0002 ArgC Acetylglutamate s 97.6 0.00029 6.3E-09 67.8 9.1 144 85-255 1-167 (349)
46 PRK13303 L-aspartate dehydroge 97.5 0.00026 5.6E-09 65.1 6.8 88 87-205 2-90 (265)
47 TIGR00036 dapB dihydrodipicoli 97.4 0.00036 7.8E-09 64.3 6.2 94 87-204 2-96 (266)
48 PRK06270 homoserine dehydrogen 97.2 0.00091 2E-08 63.7 7.4 37 85-121 1-44 (341)
49 TIGR01921 DAP-DH diaminopimela 97.1 0.0015 3.3E-08 62.4 7.2 89 86-208 3-91 (324)
50 PRK13304 L-aspartate dehydroge 97.0 0.0016 3.5E-08 59.8 6.8 92 87-209 2-93 (265)
51 COG1712 Predicted dinucleotide 97.0 0.0016 3.5E-08 59.8 6.0 92 87-208 1-92 (255)
52 PF01113 DapB_N: Dihydrodipico 96.9 0.00025 5.4E-09 58.0 0.4 94 87-204 1-95 (124)
53 PRK13302 putative L-aspartate 96.9 0.0022 4.8E-08 59.3 6.6 89 85-202 5-93 (271)
54 PRK00048 dihydrodipicolinate r 96.9 0.0023 4.9E-08 58.6 6.2 34 86-121 1-35 (257)
55 PRK08374 homoserine dehydrogen 96.8 0.0019 4.1E-08 61.6 5.6 37 85-121 1-44 (336)
56 PRK06392 homoserine dehydrogen 96.8 0.0035 7.7E-08 59.8 7.4 35 87-121 1-40 (326)
57 PRK06813 homoserine dehydrogen 96.8 0.0024 5.1E-08 61.5 5.8 37 85-121 1-44 (346)
58 COG0460 ThrA Homoserine dehydr 96.7 0.0033 7.2E-08 60.4 6.4 37 85-121 2-45 (333)
59 PRK06349 homoserine dehydrogen 96.5 0.0047 1E-07 60.6 6.3 93 86-208 3-103 (426)
60 PF01408 GFO_IDH_MocA: Oxidore 96.0 0.012 2.6E-07 46.3 4.9 94 87-210 1-95 (120)
61 COG2344 AT-rich DNA-binding pr 96.0 0.017 3.6E-07 51.9 6.2 137 36-210 37-180 (211)
62 COG0289 DapB Dihydrodipicolina 96.0 0.034 7.3E-07 52.0 8.4 96 86-205 2-98 (266)
63 PRK11579 putative oxidoreducta 95.9 0.029 6.4E-07 52.8 7.9 92 86-209 4-96 (346)
64 PF03447 NAD_binding_3: Homose 95.7 0.0027 5.8E-08 50.7 0.0 87 93-208 1-89 (117)
65 cd01076 NAD_bind_1_Glu_DH NAD( 95.2 0.19 4.1E-06 45.5 10.0 53 57-121 11-63 (227)
66 cd05211 NAD_bind_Glu_Leu_Phe_V 94.8 0.27 5.8E-06 44.3 9.7 34 85-121 22-55 (217)
67 PRK09414 glutamate dehydrogena 94.6 0.12 2.6E-06 51.5 7.9 102 85-206 231-341 (445)
68 PRK05447 1-deoxy-D-xylulose 5- 94.6 0.096 2.1E-06 51.4 7.0 110 87-206 2-120 (385)
69 PLN02700 homoserine dehydrogen 94.5 0.11 2.5E-06 50.7 7.1 37 85-121 2-44 (377)
70 PF02826 2-Hacid_dh_C: D-isome 94.5 0.059 1.3E-06 46.4 4.6 33 86-121 36-68 (178)
71 PRK05472 redox-sensing transcr 94.4 0.12 2.7E-06 45.7 6.8 95 87-209 85-179 (213)
72 PLN02775 Probable dihydrodipic 94.2 0.17 3.7E-06 47.8 7.4 34 85-121 10-44 (286)
73 COG4091 Predicted homoserine d 94.2 0.091 2E-06 51.4 5.6 92 85-187 16-112 (438)
74 PRK09466 metL bifunctional asp 93.9 0.05 1.1E-06 57.8 3.7 37 85-121 457-500 (810)
75 COG4569 MhpF Acetaldehyde dehy 93.8 0.16 3.5E-06 46.6 6.2 73 176-254 71-144 (310)
76 PRK10206 putative oxidoreducta 93.5 0.17 3.7E-06 48.1 6.2 94 86-209 1-96 (344)
77 PRK09436 thrA bifunctional asp 93.4 0.073 1.6E-06 56.6 3.8 37 85-121 464-506 (819)
78 cd05313 NAD_bind_2_Glu_DH NAD( 93.4 0.25 5.4E-06 45.8 6.9 33 86-121 38-70 (254)
79 PLN02696 1-deoxy-D-xylulose-5- 92.9 0.64 1.4E-05 46.6 9.3 110 86-206 57-178 (454)
80 COG0569 TrkA K+ transport syst 92.8 0.19 4.1E-06 45.3 5.0 98 87-210 1-102 (225)
81 PLN02477 glutamate dehydrogena 92.8 0.81 1.8E-05 45.2 9.8 33 86-121 206-238 (410)
82 PRK08410 2-hydroxyacid dehydro 92.7 0.15 3.3E-06 48.0 4.5 32 86-120 145-176 (311)
83 PRK06487 glycerate dehydrogena 92.1 0.2 4.3E-06 47.4 4.5 33 86-121 148-180 (317)
84 TIGR03736 PRTRC_ThiF PRTRC sys 91.7 0.5 1.1E-05 43.6 6.5 107 85-197 10-127 (244)
85 PF03807 F420_oxidored: NADP o 91.5 0.24 5.2E-06 37.6 3.6 42 88-130 1-42 (96)
86 PRK06932 glycerate dehydrogena 91.4 0.26 5.5E-06 46.6 4.4 32 86-120 147-178 (314)
87 COG0673 MviM Predicted dehydro 91.3 0.6 1.3E-05 43.0 6.7 97 85-209 2-99 (342)
88 PRK14030 glutamate dehydrogena 91.2 0.98 2.1E-05 45.2 8.4 123 56-203 207-339 (445)
89 TIGR02130 dapB_plant dihydrodi 90.9 0.49 1.1E-05 44.5 5.7 29 87-118 1-30 (275)
90 PTZ00079 NADP-specific glutama 90.9 1.1 2.5E-05 44.9 8.5 123 55-203 215-348 (454)
91 COG0111 SerA Phosphoglycerate 90.7 0.33 7.3E-06 46.3 4.5 103 86-201 142-251 (324)
92 PLN02928 oxidoreductase family 90.5 0.36 7.8E-06 46.3 4.5 32 86-120 159-190 (347)
93 CHL00194 ycf39 Ycf39; Provisio 90.3 0.69 1.5E-05 42.7 6.0 30 87-119 1-31 (317)
94 PRK15409 bifunctional glyoxyla 90.2 0.39 8.5E-06 45.6 4.5 31 86-119 145-176 (323)
95 PRK07574 formate dehydrogenase 90.1 0.4 8.6E-06 46.9 4.5 31 87-120 193-223 (385)
96 PRK11790 D-3-phosphoglycerate 90.1 0.4 8.8E-06 47.0 4.6 32 86-120 151-182 (409)
97 PRK13243 glyoxylate reductase; 90.1 0.41 8.9E-06 45.6 4.5 32 86-120 150-181 (333)
98 PRK06436 glycerate dehydrogena 90.0 0.43 9.3E-06 45.1 4.5 32 86-120 122-153 (303)
99 COG1052 LdhA Lactate dehydroge 89.1 0.53 1.1E-05 45.0 4.4 102 86-201 146-254 (324)
100 PRK15469 ghrA bifunctional gly 88.7 0.61 1.3E-05 44.1 4.6 31 87-120 137-167 (312)
101 PLN02306 hydroxypyruvate reduc 88.7 0.59 1.3E-05 45.7 4.6 31 86-119 165-196 (386)
102 PF03446 NAD_binding_2: NAD bi 88.5 0.76 1.6E-05 38.8 4.6 31 86-119 1-31 (163)
103 TIGR01202 bchC 2-desacetyl-2-h 88.4 2.6 5.6E-05 38.8 8.4 72 175-254 199-271 (308)
104 COG1063 Tdh Threonine dehydrog 88.3 0.87 1.9E-05 43.3 5.3 101 88-210 171-272 (350)
105 PLN00016 RNA-binding protein; 88.1 2.3 5E-05 40.4 8.1 33 85-120 51-88 (378)
106 PRK08229 2-dehydropantoate 2-r 88.0 2.3 5E-05 39.6 7.9 32 85-119 1-32 (341)
107 PRK15438 erythronate-4-phospha 87.8 0.74 1.6E-05 45.0 4.6 56 56-119 91-146 (378)
108 PLN03139 formate dehydrogenase 87.8 0.67 1.5E-05 45.4 4.3 32 86-120 199-230 (386)
109 COG2910 Putative NADH-flavin r 87.7 2.4 5.3E-05 38.3 7.4 31 87-120 1-32 (211)
110 PRK12480 D-lactate dehydrogena 87.7 0.78 1.7E-05 43.7 4.6 31 87-120 147-177 (330)
111 PF05368 NmrA: NmrA-like famil 87.6 0.47 1E-05 41.4 2.9 96 89-209 1-103 (233)
112 cd08230 glucose_DH Glucose deh 87.5 4.8 0.0001 37.5 9.7 141 87-254 174-315 (355)
113 PTZ00117 malate dehydrogenase; 87.1 2.8 6.2E-05 39.6 8.0 23 86-108 5-27 (319)
114 PRK11880 pyrroline-5-carboxyla 86.7 1 2.2E-05 40.6 4.6 24 85-108 1-24 (267)
115 PF02629 CoA_binding: CoA bind 86.4 0.9 2E-05 35.3 3.5 92 86-209 3-95 (96)
116 PF03435 Saccharop_dh: Sacchar 86.2 0.4 8.7E-06 45.7 1.7 92 89-202 1-93 (386)
117 PF13380 CoA_binding_2: CoA bi 86.1 2.6 5.7E-05 34.0 6.3 82 88-208 2-87 (116)
118 PF10727 Rossmann-like: Rossma 86.0 0.61 1.3E-05 38.8 2.5 34 85-121 9-42 (127)
119 TIGR03649 ergot_EASG ergot alk 85.8 2.9 6.3E-05 37.5 7.0 29 88-119 1-30 (285)
120 PLN02256 arogenate dehydrogena 85.6 1.7 3.6E-05 41.0 5.6 33 86-121 36-68 (304)
121 PF00056 Ldh_1_N: lactate/mala 84.9 0.23 5E-06 41.5 -0.5 23 87-109 1-24 (141)
122 TIGR01327 PGDH D-3-phosphoglyc 84.8 1.2 2.7E-05 44.9 4.6 31 87-120 139-169 (525)
123 cd01075 NAD_bind_Leu_Phe_Val_D 84.4 1.6 3.4E-05 38.5 4.6 29 87-118 29-57 (200)
124 PRK13581 D-3-phosphoglycerate 84.4 1.3 2.8E-05 44.8 4.5 32 86-120 140-171 (526)
125 PRK00257 erythronate-4-phospha 84.2 1.4 3.1E-05 43.0 4.6 55 57-119 92-146 (381)
126 KOG1502 Flavonol reductase/cin 84.1 3.1 6.8E-05 40.1 6.7 80 86-186 6-88 (327)
127 PRK14031 glutamate dehydrogena 83.7 3.1 6.8E-05 41.6 6.8 53 56-120 207-259 (444)
128 PRK08605 D-lactate dehydrogena 83.7 1.7 3.6E-05 41.4 4.6 32 86-119 146-177 (332)
129 cd00755 YgdL_like Family of ac 83.4 1.2 2.6E-05 40.5 3.5 21 87-107 12-32 (231)
130 PRK11559 garR tartronate semia 83.1 1.7 3.7E-05 39.8 4.4 31 86-119 2-32 (296)
131 PLN02819 lysine-ketoglutarate 83.1 2.7 5.8E-05 46.3 6.4 92 86-202 569-674 (1042)
132 COG0771 MurD UDP-N-acetylmuram 82.9 6.5 0.00014 39.5 8.6 89 86-202 7-95 (448)
133 PRK13403 ketol-acid reductoiso 82.4 1.8 4E-05 41.8 4.4 32 87-121 17-48 (335)
134 COG3804 Uncharacterized conser 82.1 1.8 4E-05 41.4 4.2 35 85-121 1-35 (350)
135 cd01483 E1_enzyme_family Super 81.4 1.4 3E-05 36.1 2.8 21 88-108 1-21 (143)
136 PRK07634 pyrroline-5-carboxyla 81.2 2.8 6E-05 37.1 4.9 35 86-120 4-39 (245)
137 PF02254 TrkA_N: TrkA-N domain 81.2 3 6.5E-05 32.4 4.6 29 89-120 1-29 (116)
138 PRK07417 arogenate dehydrogena 80.9 2.2 4.7E-05 39.2 4.2 30 87-119 1-30 (279)
139 PTZ00082 L-lactate dehydrogena 80.6 3 6.6E-05 39.6 5.2 22 87-108 7-28 (321)
140 KOG2741 Dimeric dihydrodiol de 80.3 5.5 0.00012 38.8 6.8 40 85-125 5-44 (351)
141 COG0287 TyrA Prephenate dehydr 80.2 2.6 5.5E-05 39.6 4.5 23 86-108 3-25 (279)
142 cd05293 LDH_1 A subgroup of L- 80.1 1 2.2E-05 42.6 1.8 22 87-108 4-25 (312)
143 KOG0069 Glyoxylate/hydroxypyru 80.0 1.4 3E-05 42.7 2.7 23 85-107 161-183 (336)
144 PLN02712 arogenate dehydrogena 79.4 2.7 5.8E-05 44.0 4.7 32 86-120 52-83 (667)
145 COG0039 Mdh Malate/lactate deh 79.3 5.5 0.00012 38.2 6.4 33 87-119 1-34 (313)
146 PLN02712 arogenate dehydrogena 79.0 2.6 5.7E-05 44.1 4.5 34 85-121 368-401 (667)
147 TIGR02853 spore_dpaA dipicolin 78.8 2.9 6.4E-05 39.0 4.4 31 87-120 152-182 (287)
148 TIGR01019 sucCoAalpha succinyl 77.6 8 0.00017 36.5 6.9 32 87-120 7-39 (286)
149 PRK08507 prephenate dehydrogen 77.5 3.8 8.2E-05 37.4 4.7 31 88-119 2-32 (275)
150 PTZ00075 Adenosylhomocysteinas 77.4 3.3 7.2E-05 41.8 4.6 31 86-119 254-284 (476)
151 TIGR03366 HpnZ_proposed putati 76.9 14 0.00031 33.2 8.2 137 87-254 122-260 (280)
152 COG1748 LYS9 Saccharopine dehy 76.9 5.2 0.00011 39.5 5.7 98 87-207 2-99 (389)
153 PLN02494 adenosylhomocysteinas 76.8 5.9 0.00013 40.1 6.1 30 87-119 255-284 (477)
154 PRK14619 NAD(P)H-dependent gly 75.6 4.3 9.4E-05 37.7 4.6 31 86-119 4-34 (308)
155 PRK01438 murD UDP-N-acetylmura 75.4 16 0.00035 35.8 8.8 87 87-201 17-103 (480)
156 PRK06476 pyrroline-5-carboxyla 75.1 4.7 0.0001 36.4 4.5 21 88-108 2-22 (258)
157 PRK09599 6-phosphogluconate de 74.9 4.3 9.3E-05 37.6 4.4 30 88-120 2-31 (301)
158 PRK09880 L-idonate 5-dehydroge 73.9 12 0.00025 34.8 7.0 94 87-206 171-265 (343)
159 TIGR01087 murD UDP-N-acetylmur 73.5 17 0.00036 35.2 8.2 84 88-201 1-87 (433)
160 PF02670 DXP_reductoisom: 1-de 73.5 6.4 0.00014 33.1 4.6 41 89-130 1-42 (129)
161 PF13460 NAD_binding_10: NADH( 73.4 5.9 0.00013 32.8 4.5 29 89-120 1-30 (183)
162 TIGR01505 tartro_sem_red 2-hyd 73.0 4.5 9.7E-05 37.1 4.0 30 88-120 1-30 (291)
163 TIGR02717 AcCoA-syn-alpha acet 73.0 16 0.00034 36.3 8.0 84 86-206 7-94 (447)
164 PRK00066 ldh L-lactate dehydro 72.8 7.3 0.00016 36.9 5.4 23 86-108 6-28 (315)
165 PRK00683 murD UDP-N-acetylmura 72.7 7.6 0.00017 37.6 5.7 82 87-202 4-85 (418)
166 PRK09496 trkA potassium transp 72.7 5.2 0.00011 38.6 4.5 31 87-120 1-31 (453)
167 KOG4354 N-acetyl-gamma-glutamy 72.7 13 0.00029 35.1 6.9 36 82-119 15-51 (340)
168 PLN02688 pyrroline-5-carboxyla 72.7 6.4 0.00014 35.4 4.8 35 87-121 1-36 (266)
169 cd05290 LDH_3 A subgroup of L- 72.5 2.1 4.5E-05 40.5 1.7 22 88-109 1-22 (307)
170 PF00208 ELFV_dehydrog: Glutam 72.5 5 0.00011 36.8 4.1 101 87-206 33-144 (244)
171 PRK12490 6-phosphogluconate de 72.4 5.4 0.00012 37.0 4.4 30 88-120 2-31 (299)
172 PRK03369 murD UDP-N-acetylmura 72.3 13 0.00029 37.0 7.3 83 87-202 13-96 (488)
173 PF03721 UDPG_MGDP_dh_N: UDP-g 72.2 5.6 0.00012 34.7 4.2 30 87-119 1-30 (185)
174 TIGR00872 gnd_rel 6-phosphoglu 71.6 5.7 0.00012 36.9 4.3 30 88-120 2-31 (298)
175 PLN02586 probable cinnamyl alc 71.1 18 0.00038 34.1 7.6 30 87-119 185-214 (360)
176 PRK07502 cyclohexadienyl dehyd 70.7 7 0.00015 36.2 4.7 32 87-119 7-38 (307)
177 PLN02602 lactate dehydrogenase 70.6 7.8 0.00017 37.5 5.1 22 87-108 38-59 (350)
178 KOG0068 D-3-phosphoglycerate d 70.4 2.9 6.3E-05 41.0 2.1 30 87-119 147-176 (406)
179 PRK03562 glutathione-regulated 70.3 5.3 0.00011 41.3 4.1 31 87-120 401-431 (621)
180 TIGR00936 ahcY adenosylhomocys 70.3 6.3 0.00014 39.0 4.5 30 87-119 196-225 (406)
181 PRK06718 precorrin-2 dehydroge 69.6 50 0.0011 29.2 9.7 31 87-120 11-41 (202)
182 PRK06928 pyrroline-5-carboxyla 69.6 7.8 0.00017 35.7 4.7 34 87-120 2-36 (277)
183 PRK12491 pyrroline-5-carboxyla 69.5 8 0.00017 35.7 4.8 34 86-119 2-36 (272)
184 PRK15116 sulfur acceptor prote 68.8 5.5 0.00012 37.2 3.6 22 87-108 31-52 (268)
185 PLN00141 Tic62-NAD(P)-related 68.7 10 0.00022 33.5 5.2 31 85-118 16-47 (251)
186 PRK03659 glutathione-regulated 68.5 6.2 0.00013 40.6 4.2 32 86-120 400-431 (601)
187 COG0334 GdhA Glutamate dehydro 68.3 26 0.00056 35.0 8.2 33 86-121 207-239 (411)
188 TIGR03201 dearomat_had 6-hydro 68.1 33 0.00072 31.9 8.7 137 87-254 168-312 (349)
189 PRK04690 murD UDP-N-acetylmura 67.9 21 0.00046 35.4 7.7 87 87-202 9-95 (468)
190 cd08237 ribitol-5-phosphate_DH 67.2 35 0.00076 31.7 8.7 32 87-119 165-196 (341)
191 cd05294 LDH-like_MDH_nadp A la 67.2 15 0.00033 34.5 6.3 31 87-118 1-32 (309)
192 PRK00421 murC UDP-N-acetylmura 66.8 23 0.00049 34.8 7.6 83 87-201 8-91 (461)
193 PRK00094 gpsA NAD(P)H-dependen 66.6 9 0.0002 35.1 4.5 30 87-119 2-31 (325)
194 PRK10669 putative cation:proto 66.5 7.4 0.00016 39.3 4.2 32 86-120 417-448 (558)
195 PRK08818 prephenate dehydrogen 66.3 8.8 0.00019 37.5 4.6 31 86-118 4-35 (370)
196 PRK15461 NADH-dependent gamma- 65.6 8.9 0.00019 35.6 4.3 31 87-120 2-32 (296)
197 PLN03209 translocon at the inn 65.5 31 0.00068 35.8 8.5 30 86-118 80-110 (576)
198 PRK08306 dipicolinate synthase 65.2 9.9 0.00022 35.6 4.5 32 86-120 152-183 (296)
199 cd01338 MDH_choloroplast_like 64.9 22 0.00047 33.9 6.8 23 86-108 2-25 (322)
200 PRK08644 thiamine biosynthesis 64.7 4.2 9.2E-05 36.3 1.9 23 86-108 28-50 (212)
201 TIGR03026 NDP-sugDHase nucleot 64.5 8.8 0.00019 37.2 4.2 30 87-119 1-30 (411)
202 PRK05479 ketol-acid reductoiso 64.3 9.4 0.0002 36.8 4.3 30 87-119 18-47 (330)
203 cd08298 CAD2 Cinnamyl alcohol 64.2 98 0.0021 27.9 10.8 128 87-254 169-296 (329)
204 cd08239 THR_DH_like L-threonin 64.2 15 0.00033 33.6 5.5 137 87-254 165-302 (339)
205 PRK07679 pyrroline-5-carboxyla 64.0 12 0.00025 34.3 4.7 33 87-119 4-37 (279)
206 PRK00141 murD UDP-N-acetylmura 63.9 35 0.00076 33.8 8.4 83 87-201 16-99 (473)
207 PRK05476 S-adenosyl-L-homocyst 63.8 10 0.00022 37.8 4.6 30 87-119 213-242 (425)
208 PF02737 3HCDH_N: 3-hydroxyacy 63.5 13 0.00027 32.2 4.6 29 88-119 1-29 (180)
209 COG2085 Predicted dinucleotide 63.5 9.7 0.00021 34.7 4.0 31 86-119 1-31 (211)
210 PLN02178 cinnamyl-alcohol dehy 63.3 41 0.00089 32.1 8.5 30 87-119 180-209 (375)
211 PRK11199 tyrA bifunctional cho 62.8 10 0.00022 36.7 4.2 31 86-119 98-129 (374)
212 PRK14106 murD UDP-N-acetylmura 62.7 23 0.00049 34.3 6.7 88 87-201 6-93 (450)
213 cd08242 MDR_like Medium chain 62.4 37 0.00081 30.6 7.7 85 87-203 157-241 (319)
214 PRK06545 prephenate dehydrogen 62.2 11 0.00024 36.0 4.4 21 88-108 2-22 (359)
215 cd00757 ThiF_MoeB_HesA_family 62.2 5.8 0.00013 35.4 2.3 22 87-108 22-43 (228)
216 KOG1203 Predicted dehydrogenas 62.2 14 0.0003 36.8 5.1 25 85-109 78-103 (411)
217 PRK06249 2-dehydropantoate 2-r 61.9 12 0.00026 34.8 4.4 23 86-108 5-27 (313)
218 PRK15059 tartronate semialdehy 61.7 12 0.00025 34.9 4.3 29 88-119 2-30 (292)
219 PRK05678 succinyl-CoA syntheta 61.7 29 0.00064 32.8 7.0 32 87-120 9-41 (291)
220 TIGR01915 npdG NADPH-dependent 61.5 14 0.0003 32.6 4.6 29 87-118 1-30 (219)
221 cd08281 liver_ADH_like1 Zinc-d 60.7 27 0.00058 32.9 6.6 99 87-209 193-292 (371)
222 PLN02545 3-hydroxybutyryl-CoA 60.5 14 0.0003 34.0 4.5 30 87-119 5-34 (295)
223 TIGR00465 ilvC ketol-acid redu 59.9 13 0.00028 35.4 4.3 31 87-120 4-34 (314)
224 PLN02427 UDP-apiose/xylose syn 59.8 17 0.00036 34.4 5.1 34 85-120 13-47 (386)
225 PRK12475 thiamine/molybdopteri 59.8 5.5 0.00012 38.2 1.8 22 87-108 25-46 (338)
226 PRK09496 trkA potassium transp 59.3 14 0.0003 35.6 4.5 32 86-120 231-262 (453)
227 PRK02472 murD UDP-N-acetylmura 59.3 40 0.00086 32.6 7.7 85 87-201 6-93 (447)
228 PRK01710 murD UDP-N-acetylmura 59.2 29 0.00063 34.1 6.8 88 87-202 15-103 (458)
229 PRK03803 murD UDP-N-acetylmura 58.9 60 0.0013 31.6 8.9 84 88-201 8-93 (448)
230 PRK00258 aroE shikimate 5-dehy 58.7 33 0.00072 31.5 6.7 32 87-120 124-155 (278)
231 TIGR00243 Dxr 1-deoxy-D-xylulo 58.6 11 0.00024 37.2 3.7 42 87-129 2-44 (389)
232 PTZ00431 pyrroline carboxylate 58.4 9.7 0.00021 34.6 3.1 22 87-108 4-25 (260)
233 PRK09260 3-hydroxybutyryl-CoA 58.0 15 0.00033 33.7 4.3 30 87-119 2-31 (288)
234 PRK06129 3-hydroxyacyl-CoA deh 57.8 15 0.00033 34.1 4.3 31 87-120 3-33 (308)
235 PRK02006 murD UDP-N-acetylmura 57.7 57 0.0012 32.4 8.6 28 87-117 8-35 (498)
236 cd05213 NAD_bind_Glutamyl_tRNA 57.7 12 0.00026 35.1 3.7 32 86-119 178-209 (311)
237 PRK07680 late competence prote 57.7 10 0.00022 34.5 3.1 21 88-108 2-22 (273)
238 PRK02705 murD UDP-N-acetylmura 57.3 22 0.00047 34.6 5.5 28 88-118 2-29 (459)
239 cd01486 Apg7 Apg7 is an E1-lik 57.3 6.6 0.00014 37.6 1.8 21 88-108 1-21 (307)
240 cd05191 NAD_bind_amino_acid_DH 56.7 18 0.00039 27.2 3.9 22 87-108 24-45 (86)
241 PRK14618 NAD(P)H-dependent gly 56.7 18 0.00038 33.8 4.6 31 87-120 5-35 (328)
242 COG1062 AdhC Zn-dependent alco 56.6 18 0.0004 35.4 4.7 97 87-206 187-284 (366)
243 PRK06035 3-hydroxyacyl-CoA deh 56.6 17 0.00038 33.3 4.5 30 87-119 4-33 (291)
244 COG1179 Dinucleotide-utilizing 56.5 12 0.00025 35.2 3.3 114 87-206 31-151 (263)
245 PRK06522 2-dehydropantoate 2-r 56.4 18 0.00039 32.7 4.5 30 87-119 1-30 (304)
246 COG0345 ProC Pyrroline-5-carbo 56.2 19 0.00041 33.8 4.7 34 87-120 2-36 (266)
247 PRK06130 3-hydroxybutyryl-CoA 55.3 20 0.00043 33.1 4.6 30 87-119 5-34 (311)
248 PRK06444 prephenate dehydrogen 55.3 11 0.00024 33.5 2.9 21 87-107 1-22 (197)
249 PRK03806 murD UDP-N-acetylmura 54.7 89 0.0019 30.3 9.3 84 87-202 7-91 (438)
250 PRK05808 3-hydroxybutyryl-CoA 54.6 19 0.0004 32.9 4.3 30 87-119 4-33 (282)
251 COG0743 Dxr 1-deoxy-D-xylulose 54.3 16 0.00035 36.0 4.0 43 87-130 2-45 (385)
252 PRK05597 molybdopterin biosynt 54.2 8.3 0.00018 37.1 2.0 23 86-108 28-50 (355)
253 PRK04663 murD UDP-N-acetylmura 53.9 87 0.0019 30.5 9.1 86 87-202 8-94 (438)
254 PRK04308 murD UDP-N-acetylmura 53.9 82 0.0018 30.6 8.9 86 87-201 6-92 (445)
255 TIGR02355 moeB molybdopterin s 53.7 8 0.00017 35.2 1.8 22 87-108 25-46 (240)
256 PRK11064 wecC UDP-N-acetyl-D-m 53.1 19 0.00041 35.3 4.4 30 87-119 4-33 (415)
257 PLN02572 UDP-sulfoquinovose sy 52.9 27 0.00059 34.3 5.4 32 85-119 46-78 (442)
258 cd00401 AdoHcyase S-adenosyl-L 52.5 21 0.00046 35.4 4.6 29 87-118 203-231 (413)
259 COG5322 Predicted dehydrogenas 51.5 19 0.00042 34.6 3.9 60 177-242 231-291 (351)
260 COG1064 AdhP Zn-dependent alco 51.5 77 0.0017 30.8 8.1 132 86-253 167-300 (339)
261 COG0702 Predicted nucleoside-d 51.0 22 0.00048 30.9 4.1 30 88-120 2-32 (275)
262 TIGR01035 hemA glutamyl-tRNA r 51.0 22 0.00048 34.8 4.5 32 87-120 181-212 (417)
263 PLN02778 3,5-epimerase/4-reduc 50.5 17 0.00038 33.4 3.5 24 85-108 8-32 (298)
264 PTZ00142 6-phosphogluconate de 50.5 19 0.00041 36.2 4.0 31 87-120 2-32 (470)
265 PF00670 AdoHcyase_NAD: S-aden 50.4 27 0.00058 30.5 4.4 22 87-108 24-45 (162)
266 PRK08655 prephenate dehydrogen 50.1 23 0.0005 35.0 4.5 30 87-119 1-31 (437)
267 PRK12771 putative glutamate sy 50.0 7.4 0.00016 39.3 1.0 32 86-120 137-168 (564)
268 TIGR00518 alaDH alanine dehydr 49.9 24 0.00053 34.1 4.5 31 86-119 167-197 (370)
269 PRK10537 voltage-gated potassi 49.5 30 0.00066 34.0 5.1 30 87-119 241-270 (393)
270 PRK15057 UDP-glucose 6-dehydro 49.5 22 0.00048 34.7 4.2 38 87-130 1-38 (388)
271 PRK07531 bifunctional 3-hydrox 49.4 25 0.00054 35.3 4.6 30 87-119 5-34 (495)
272 PRK11908 NAD-dependent epimera 49.3 27 0.00058 32.4 4.6 31 87-119 2-33 (347)
273 PRK07530 3-hydroxybutyryl-CoA 49.3 27 0.00059 32.0 4.5 30 87-119 5-34 (292)
274 PRK15182 Vi polysaccharide bio 49.2 21 0.00045 35.3 3.9 31 86-120 6-36 (425)
275 PRK09424 pntA NAD(P) transhydr 49.0 1.2E+02 0.0026 31.1 9.4 24 85-108 164-187 (509)
276 TIGR02818 adh_III_F_hyde S-(hy 48.8 78 0.0017 29.8 7.7 30 87-119 187-217 (368)
277 PRK06223 malate dehydrogenase; 48.8 29 0.00062 32.1 4.6 30 87-118 3-32 (307)
278 cd05283 CAD1 Cinnamyl alcohol 48.5 1E+02 0.0023 28.2 8.3 87 87-201 171-257 (337)
279 PF01262 AlaDh_PNT_C: Alanine 48.4 33 0.0007 29.1 4.6 33 85-120 19-51 (168)
280 PRK14573 bifunctional D-alanyl 47.9 71 0.0015 34.0 7.9 82 88-201 6-88 (809)
281 cd08294 leukotriene_B4_DH_like 47.8 60 0.0013 29.2 6.5 95 87-206 145-240 (329)
282 PLN02350 phosphogluconate dehy 47.7 21 0.00046 36.2 3.8 32 86-120 6-37 (493)
283 KOG0455 Homoserine dehydrogena 47.7 18 0.0004 34.4 3.1 36 86-121 3-44 (364)
284 PRK12921 2-dehydropantoate 2-r 47.6 28 0.00061 31.6 4.3 22 87-108 1-22 (305)
285 TIGR00873 gnd 6-phosphoglucona 47.4 21 0.00045 35.9 3.7 30 88-120 1-30 (467)
286 PLN02740 Alcohol dehydrogenase 47.4 76 0.0016 30.0 7.4 30 87-119 200-230 (381)
287 PF02558 ApbA: Ketopantoate re 46.9 29 0.00062 28.1 3.9 29 89-120 1-29 (151)
288 cd00704 MDH Malate dehydrogena 46.6 52 0.0011 31.3 6.1 22 87-108 1-23 (323)
289 cd01065 NAD_bind_Shikimate_DH 46.4 23 0.0005 28.7 3.2 22 87-108 20-41 (155)
290 cd08301 alcohol_DH_plants Plan 46.2 46 0.001 31.1 5.7 30 87-119 189-219 (369)
291 cd08300 alcohol_DH_class_III c 45.7 97 0.0021 29.0 7.8 29 87-118 188-217 (368)
292 TIGR03451 mycoS_dep_FDH mycoth 45.5 93 0.002 29.0 7.6 30 87-119 178-208 (358)
293 PF04321 RmlD_sub_bind: RmlD s 45.2 32 0.0007 31.6 4.4 31 87-120 1-32 (286)
294 PRK02318 mannitol-1-phosphate 45.1 26 0.00057 33.8 3.9 31 87-119 1-31 (381)
295 PLN02166 dTDP-glucose 4,6-dehy 45.0 32 0.0007 33.9 4.6 33 85-120 119-152 (436)
296 cd05291 HicDH_like L-2-hydroxy 44.8 35 0.00076 31.8 4.6 31 88-119 2-32 (306)
297 cd01484 E1-2_like Ubiquitin ac 44.7 9.8 0.00021 34.8 0.8 21 88-108 1-21 (234)
298 cd01336 MDH_cytoplasmic_cytoso 44.6 39 0.00084 32.1 4.9 23 86-108 2-25 (325)
299 TIGR01761 thiaz-red thiazoliny 44.5 33 0.00071 33.1 4.4 34 86-121 3-36 (343)
300 TIGR00507 aroE shikimate 5-deh 44.3 67 0.0014 29.3 6.3 31 87-120 118-148 (270)
301 PRK15181 Vi polysaccharide bio 43.8 35 0.00076 31.9 4.4 31 87-120 16-47 (348)
302 cd08277 liver_alcohol_DH_like 43.8 80 0.0017 29.6 6.9 30 87-119 186-216 (365)
303 PLN02514 cinnamyl-alcohol dehy 43.6 74 0.0016 29.8 6.6 134 87-255 182-316 (357)
304 PRK06988 putative formyltransf 43.4 34 0.00074 32.3 4.3 31 85-118 1-31 (312)
305 PF01488 Shikimate_DH: Shikima 43.3 39 0.00084 27.6 4.1 93 87-207 13-107 (135)
306 PRK05442 malate dehydrogenase; 43.3 55 0.0012 31.3 5.7 24 85-108 3-27 (326)
307 PRK07877 hypothetical protein; 43.0 13 0.00028 39.5 1.6 108 86-202 107-223 (722)
308 PLN02353 probable UDP-glucose 43.0 37 0.0008 34.2 4.7 32 87-119 2-33 (473)
309 PRK08219 short chain dehydroge 43.0 36 0.00078 28.8 4.1 29 87-119 4-33 (227)
310 cd08235 iditol_2_DH_like L-idi 42.9 1.7E+02 0.0037 26.5 8.8 30 87-119 167-197 (343)
311 PRK10675 UDP-galactose-4-epime 42.8 38 0.00083 30.9 4.5 30 87-119 1-31 (338)
312 PRK05708 2-dehydropantoate 2-r 42.4 38 0.00083 31.5 4.4 21 87-107 3-23 (305)
313 PLN02695 GDP-D-mannose-3',5'-e 42.0 39 0.00084 32.1 4.5 31 86-119 21-52 (370)
314 PRK08293 3-hydroxybutyryl-CoA 41.9 41 0.00089 30.8 4.5 29 87-118 4-32 (287)
315 PLN02827 Alcohol dehydrogenase 41.7 91 0.002 29.6 7.0 22 87-108 195-216 (378)
316 PRK07819 3-hydroxybutyryl-CoA 41.5 41 0.00089 31.2 4.5 30 87-119 6-35 (286)
317 PRK06719 precorrin-2 dehydroge 41.5 52 0.0011 27.9 4.7 30 87-119 14-43 (157)
318 PLN02206 UDP-glucuronate decar 41.5 38 0.00081 33.5 4.4 31 86-119 119-150 (442)
319 PRK10309 galactitol-1-phosphat 41.1 95 0.002 28.6 6.8 22 87-108 162-183 (347)
320 cd08233 butanediol_DH_like (2R 40.7 85 0.0018 28.9 6.4 30 87-119 174-204 (351)
321 PLN02657 3,8-divinyl protochlo 40.7 41 0.00089 32.4 4.5 31 86-119 60-91 (390)
322 KOG2250 Glutamate/leucine/phen 40.7 2.8E+02 0.006 28.6 10.3 59 53-121 225-283 (514)
323 cd08269 Zn_ADH9 Alcohol dehydr 40.6 91 0.002 27.6 6.4 31 87-120 131-162 (312)
324 COG1023 Gnd Predicted 6-phosph 40.3 30 0.00066 32.8 3.3 29 87-118 1-29 (300)
325 cd08245 CAD Cinnamyl alcohol d 40.3 1E+02 0.0023 27.8 6.9 31 87-120 164-194 (330)
326 PRK07066 3-hydroxybutyryl-CoA 40.2 44 0.00095 32.0 4.5 29 87-118 8-36 (321)
327 cd08231 MDR_TM0436_like Hypoth 40.2 1.2E+02 0.0026 28.1 7.3 30 87-119 179-209 (361)
328 cd08255 2-desacetyl-2-hydroxye 40.1 1E+02 0.0022 27.0 6.6 30 87-119 99-129 (277)
329 PF00070 Pyr_redox: Pyridine n 39.9 70 0.0015 23.3 4.7 21 88-108 1-21 (80)
330 PF00899 ThiF: ThiF family; I 39.6 34 0.00073 27.7 3.2 107 87-198 3-114 (135)
331 KOG2380 Prephenate dehydrogena 38.3 30 0.00065 34.3 3.1 24 85-108 51-74 (480)
332 PLN00106 malate dehydrogenase 38.2 43 0.00094 32.0 4.2 22 87-108 19-41 (323)
333 PF00107 ADH_zinc_N: Zinc-bind 38.2 13 0.00028 29.1 0.5 71 175-252 57-128 (130)
334 PRK14852 hypothetical protein; 38.0 38 0.00082 37.4 4.1 22 86-107 332-353 (989)
335 cd05292 LDH_2 A subgroup of L- 38.0 32 0.0007 32.2 3.2 22 87-108 1-22 (308)
336 PF01370 Epimerase: NAD depend 38.0 64 0.0014 27.3 4.8 30 89-121 1-31 (236)
337 PRK07411 hypothetical protein; 37.7 16 0.00035 35.6 1.2 23 86-108 38-60 (390)
338 PRK14806 bifunctional cyclohex 37.0 47 0.001 34.6 4.5 32 87-119 4-35 (735)
339 PRK07326 short chain dehydroge 36.9 57 0.0012 27.9 4.4 30 87-119 7-37 (237)
340 TIGR01181 dTDP_gluc_dehyt dTDP 36.5 51 0.0011 29.2 4.2 31 88-119 1-32 (317)
341 PRK00045 hemA glutamyl-tRNA re 36.4 43 0.00094 32.8 3.9 31 87-120 183-214 (423)
342 TIGR01214 rmlD dTDP-4-dehydror 36.1 55 0.0012 29.0 4.3 29 88-119 1-30 (287)
343 PLN02896 cinnamyl-alcohol dehy 36.1 61 0.0013 30.1 4.8 30 87-119 11-41 (353)
344 PRK08017 oxidoreductase; Provi 36.1 62 0.0014 28.0 4.5 29 88-119 4-33 (256)
345 PRK14851 hypothetical protein; 35.9 15 0.00033 38.7 0.7 97 86-187 43-144 (679)
346 PLN00112 malate dehydrogenase 35.8 28 0.00062 34.9 2.6 24 85-108 99-123 (444)
347 TIGR02819 fdhA_non_GSH formald 35.8 1.5E+02 0.0032 28.6 7.4 32 87-121 187-218 (393)
348 cd08278 benzyl_alcohol_DH Benz 35.6 1.4E+02 0.0031 27.9 7.1 32 175-206 253-284 (365)
349 PRK04148 hypothetical protein; 35.6 61 0.0013 27.4 4.2 29 87-119 18-46 (134)
350 PRK09291 short chain dehydroge 35.6 64 0.0014 27.9 4.5 30 87-119 3-33 (257)
351 PRK05600 thiamine biosynthesis 35.3 21 0.00045 34.7 1.5 22 87-108 42-63 (370)
352 PRK08223 hypothetical protein; 35.2 40 0.00087 32.0 3.4 21 87-107 28-48 (287)
353 PLN03154 putative allyl alcoho 35.2 1.4E+02 0.003 28.0 7.0 30 87-119 160-190 (348)
354 cd08262 Zn_ADH8 Alcohol dehydr 34.9 1.7E+02 0.0036 26.6 7.4 22 87-108 163-184 (341)
355 PLN02260 probable rhamnose bio 34.9 58 0.0013 33.5 4.8 35 85-120 5-40 (668)
356 PLN02240 UDP-glucose 4-epimera 34.8 66 0.0014 29.5 4.7 30 87-119 6-36 (352)
357 PRK14192 bifunctional 5,10-met 34.8 1.3E+02 0.0029 28.1 6.8 22 87-108 160-182 (283)
358 PRK07023 short chain dehydroge 34.4 62 0.0013 28.0 4.2 29 87-118 2-31 (243)
359 PF01232 Mannitol_dh: Mannitol 34.0 53 0.0011 27.5 3.6 35 87-121 1-38 (151)
360 PLN02583 cinnamoyl-CoA reducta 33.9 70 0.0015 29.1 4.7 29 87-118 7-36 (297)
361 TIGR03466 HpnA hopanoid-associ 33.7 59 0.0013 29.2 4.1 30 88-120 2-32 (328)
362 PLN02260 probable rhamnose bio 33.7 46 0.001 34.2 3.8 24 85-108 379-403 (668)
363 COG0451 WcaG Nucleoside-diphos 33.7 63 0.0014 28.7 4.3 30 88-120 2-32 (314)
364 cd08238 sorbose_phosphate_red 33.2 1.9E+02 0.0042 27.6 7.8 34 175-208 256-289 (410)
365 cd05280 MDR_yhdh_yhfp Yhdh and 33.1 1.5E+02 0.0033 26.4 6.7 29 88-119 149-178 (325)
366 KOG1399 Flavin-containing mono 32.5 58 0.0013 32.7 4.2 31 85-118 5-35 (448)
367 cd08295 double_bond_reductase_ 32.4 1.8E+02 0.0039 26.6 7.2 30 87-119 153-183 (338)
368 PLN02214 cinnamoyl-CoA reducta 32.4 80 0.0017 29.5 4.9 30 87-119 11-41 (342)
369 cd05279 Zn_ADH1 Liver alcohol 31.9 1.2E+02 0.0025 28.5 5.9 22 87-108 185-206 (365)
370 PRK05086 malate dehydrogenase; 31.3 82 0.0018 29.7 4.8 21 87-107 1-22 (312)
371 PRK03815 murD UDP-N-acetylmura 31.3 58 0.0012 31.8 3.9 21 87-108 1-21 (401)
372 TIGR03570 NeuD_NnaD sugar O-ac 31.2 82 0.0018 26.2 4.4 31 88-121 1-31 (201)
373 PRK12745 3-ketoacyl-(acyl-carr 31.2 84 0.0018 27.2 4.6 30 87-119 3-33 (256)
374 cd00300 LDH_like L-lactate deh 31.2 80 0.0017 29.4 4.7 20 89-108 1-20 (300)
375 PLN02662 cinnamyl-alcohol dehy 31.0 67 0.0015 29.0 4.0 29 87-118 5-34 (322)
376 PRK10083 putative oxidoreducta 30.9 1.3E+02 0.0027 27.4 5.9 20 87-106 162-181 (339)
377 PTZ00325 malate dehydrogenase; 30.8 51 0.0011 31.5 3.3 78 175-260 75-173 (321)
378 PRK06019 phosphoribosylaminoim 30.8 78 0.0017 30.2 4.6 31 87-120 3-33 (372)
379 PLN00198 anthocyanidin reducta 30.8 73 0.0016 29.3 4.3 30 86-118 9-39 (338)
380 PRK05653 fabG 3-ketoacyl-(acyl 30.8 87 0.0019 26.5 4.5 31 87-120 6-37 (246)
381 cd08296 CAD_like Cinnamyl alco 30.8 1.4E+02 0.003 27.4 6.1 95 87-207 165-259 (333)
382 cd08232 idonate-5-DH L-idonate 30.5 3E+02 0.0064 25.0 8.2 31 176-206 231-261 (339)
383 cd01485 E1-1_like Ubiquitin ac 30.2 40 0.00087 29.6 2.3 21 87-107 20-40 (198)
384 TIGR02825 B4_12hDH leukotriene 30.1 2.1E+02 0.0047 25.9 7.2 30 87-119 140-170 (325)
385 PRK10538 malonic semialdehyde 30.0 87 0.0019 27.3 4.5 29 88-119 2-31 (248)
386 KOG0024 Sorbitol dehydrogenase 30.0 50 0.0011 32.3 3.1 31 176-208 242-273 (354)
387 cd08260 Zn_ADH6 Alcohol dehydr 29.8 2E+02 0.0044 26.2 7.0 31 87-120 167-197 (345)
388 PRK10217 dTDP-glucose 4,6-dehy 29.4 73 0.0016 29.4 4.1 22 87-108 2-24 (355)
389 PRK06046 alanine dehydrogenase 29.2 89 0.0019 29.5 4.7 34 86-121 129-162 (326)
390 TIGR01179 galE UDP-glucose-4-e 29.1 83 0.0018 28.0 4.2 29 88-119 1-30 (328)
391 cd08270 MDR4 Medium chain dehy 28.9 4E+02 0.0087 23.4 8.9 89 87-208 134-223 (305)
392 PF12338 RbcS: Ribulose-1,5-bi 28.8 31 0.00066 24.2 1.1 19 36-54 23-41 (45)
393 cd01337 MDH_glyoxysomal_mitoch 28.8 59 0.0013 30.9 3.4 22 87-108 1-23 (310)
394 PRK14620 NAD(P)H-dependent gly 28.6 57 0.0012 30.3 3.2 22 87-108 1-22 (326)
395 cd08234 threonine_DH_like L-th 28.6 1.3E+02 0.0029 27.1 5.5 22 87-108 161-182 (334)
396 cd08263 Zn_ADH10 Alcohol dehyd 28.5 2.9E+02 0.0063 25.6 7.9 30 87-119 189-219 (367)
397 cd08285 NADP_ADH NADP(H)-depen 28.5 2.1E+02 0.0045 26.3 6.9 22 87-108 168-189 (351)
398 PRK09987 dTDP-4-dehydrorhamnos 28.5 79 0.0017 28.9 4.1 22 87-108 1-23 (299)
399 cd05288 PGDH Prostaglandin deh 28.3 1.9E+02 0.0041 25.9 6.5 30 87-119 147-177 (329)
400 PRK12826 3-ketoacyl-(acyl-carr 28.2 92 0.002 26.6 4.2 30 87-119 7-37 (251)
401 TIGR01472 gmd GDP-mannose 4,6- 27.9 89 0.0019 28.8 4.4 30 88-120 2-32 (343)
402 TIGR02279 PaaC-3OHAcCoADH 3-hy 27.9 85 0.0018 31.8 4.5 30 87-119 6-35 (503)
403 COG1893 ApbA Ketopantoate redu 27.9 81 0.0018 29.8 4.1 22 87-108 1-22 (307)
404 cd01080 NAD_bind_m-THF_DH_Cycl 27.6 1E+02 0.0023 26.6 4.4 22 87-108 45-67 (168)
405 PRK12320 hypothetical protein; 27.5 85 0.0018 33.4 4.5 31 87-120 1-32 (699)
406 KOG3923 D-aspartate oxidase [A 27.5 97 0.0021 30.2 4.5 50 85-134 2-59 (342)
407 cd08289 MDR_yhfp_like Yhfp put 27.4 1.6E+02 0.0035 26.4 5.8 96 87-208 148-244 (326)
408 PLN02172 flavin-containing mon 27.4 2E+02 0.0042 28.7 6.9 80 88-185 206-285 (461)
409 PRK08268 3-hydroxy-acyl-CoA de 27.2 89 0.0019 31.6 4.5 30 87-119 8-37 (507)
410 PRK07454 short chain dehydroge 27.2 1.1E+02 0.0024 26.3 4.6 31 87-120 7-38 (241)
411 TIGR01777 yfcH conserved hypot 26.9 75 0.0016 27.9 3.5 29 89-120 1-30 (292)
412 COG0677 WecC UDP-N-acetyl-D-ma 26.6 72 0.0016 32.1 3.6 31 85-118 8-38 (436)
413 PLN00203 glutamyl-tRNA reducta 26.5 67 0.0015 32.8 3.5 32 87-120 267-298 (519)
414 TIGR01759 MalateDH-SF1 malate 26.4 75 0.0016 30.3 3.6 24 85-108 2-26 (323)
415 PTZ00357 methyltransferase; Pr 26.3 1.7E+02 0.0036 32.0 6.3 36 85-121 700-737 (1072)
416 PLN02702 L-idonate 5-dehydroge 26.3 1E+02 0.0022 28.7 4.4 31 176-206 254-284 (364)
417 PRK08125 bifunctional UDP-gluc 26.3 93 0.002 32.2 4.5 33 86-120 315-348 (660)
418 PRK07231 fabG 3-ketoacyl-(acyl 26.2 1.1E+02 0.0024 26.2 4.4 30 87-119 6-36 (251)
419 PRK08163 salicylate hydroxylas 26.1 1E+02 0.0022 28.9 4.4 31 85-118 3-33 (396)
420 PRK04965 NADH:flavorubredoxin 26.1 97 0.0021 29.3 4.3 34 86-120 2-35 (377)
421 PRK07236 hypothetical protein; 26.0 1.1E+02 0.0023 28.9 4.6 33 85-120 5-37 (386)
422 PF07991 IlvN: Acetohydroxy ac 25.6 1.1E+02 0.0025 26.8 4.3 30 87-119 5-34 (165)
423 PRK07577 short chain dehydroge 25.6 1.2E+02 0.0025 25.9 4.4 29 88-119 5-34 (234)
424 TIGR02356 adenyl_thiF thiazole 25.5 92 0.002 27.3 3.8 22 87-108 22-43 (202)
425 TIGR03855 NAD_NadX aspartate d 25.5 70 0.0015 29.1 3.1 30 176-205 37-66 (229)
426 KOG0405 Pyridine nucleotide-di 25.3 17 0.00037 36.1 -0.9 24 85-108 188-211 (478)
427 PRK12827 short chain dehydroge 25.2 1.2E+02 0.0027 25.8 4.5 30 87-119 7-37 (249)
428 TIGR01082 murC UDP-N-acetylmur 25.0 2.8E+02 0.0061 27.1 7.4 82 88-201 1-83 (448)
429 PLN02858 fructose-bisphosphate 25.0 87 0.0019 35.9 4.3 32 86-120 324-355 (1378)
430 PRK08177 short chain dehydroge 24.8 1.2E+02 0.0026 25.9 4.4 30 88-120 3-33 (225)
431 PRK11728 hydroxyglutarate oxid 24.8 1.2E+02 0.0025 28.9 4.6 34 86-120 2-35 (393)
432 COG0106 HisA Phosphoribosylfor 24.8 69 0.0015 29.8 2.9 26 181-206 78-103 (241)
433 PRK09009 C factor cell-cell si 24.6 74 0.0016 27.3 3.0 21 88-108 2-23 (235)
434 PRK05565 fabG 3-ketoacyl-(acyl 24.6 1.3E+02 0.0028 25.7 4.5 29 87-118 6-35 (247)
435 PRK00676 hemA glutamyl-tRNA re 24.3 94 0.002 30.2 3.9 33 87-121 175-207 (338)
436 PRK10084 dTDP-glucose 4,6 dehy 24.3 70 0.0015 29.5 2.9 22 87-108 1-23 (352)
437 PF00106 adh_short: short chai 24.3 1.7E+02 0.0036 23.4 4.9 31 88-120 2-33 (167)
438 PRK06947 glucose-1-dehydrogena 24.2 1.3E+02 0.0027 26.0 4.4 29 86-117 2-31 (248)
439 PRK11150 rfaD ADP-L-glycero-D- 24.1 1.1E+02 0.0024 27.6 4.1 28 89-119 2-30 (308)
440 PRK09135 pteridine reductase; 24.0 1.3E+02 0.0029 25.6 4.5 30 87-119 7-37 (249)
441 PRK12439 NAD(P)H-dependent gly 23.9 81 0.0018 29.9 3.3 23 86-108 7-29 (341)
442 PRK07102 short chain dehydroge 23.8 1.3E+02 0.0028 25.9 4.4 29 87-118 2-31 (243)
443 cd01078 NAD_bind_H4MPT_DH NADP 23.8 1.4E+02 0.0031 25.4 4.6 30 87-119 29-59 (194)
444 PRK12825 fabG 3-ketoacyl-(acyl 23.8 82 0.0018 26.7 3.1 22 87-108 7-29 (249)
445 TIGR01763 MalateDH_bact malate 23.8 1.1E+02 0.0025 28.6 4.3 22 87-108 2-23 (305)
446 PRK08267 short chain dehydroge 23.7 1.3E+02 0.0028 26.2 4.4 29 88-119 3-32 (260)
447 PRK12824 acetoacetyl-CoA reduc 23.5 1.4E+02 0.003 25.4 4.5 29 87-118 3-32 (245)
448 PLN02948 phosphoribosylaminoim 23.4 1.6E+02 0.0034 30.4 5.5 32 85-119 21-52 (577)
449 PLN02927 antheraxanthin epoxid 23.4 3.4E+02 0.0074 28.8 8.0 24 85-108 80-103 (668)
450 PRK12829 short chain dehydroge 23.4 1.3E+02 0.0029 26.0 4.4 30 87-119 12-42 (264)
451 PLN02650 dihydroflavonol-4-red 23.4 1.2E+02 0.0026 28.1 4.3 29 87-118 6-35 (351)
452 PRK12409 D-amino acid dehydrog 23.3 1.2E+02 0.0026 28.7 4.4 31 87-120 2-32 (410)
453 PRK00711 D-amino acid dehydrog 23.1 1.3E+02 0.0029 28.3 4.6 31 87-120 1-31 (416)
454 PF06115 DUF956: Domain of unk 23.1 76 0.0016 26.5 2.6 40 149-190 24-69 (118)
455 PRK05225 ketol-acid reductoiso 22.9 59 0.0013 33.2 2.3 14 87-100 37-50 (487)
456 PRK05884 short chain dehydroge 22.7 1.3E+02 0.0029 26.0 4.3 28 88-118 2-30 (223)
457 PF13454 NAD_binding_9: FAD-NA 22.6 1.3E+02 0.0027 25.0 3.9 31 90-120 1-33 (156)
458 PRK07074 short chain dehydroge 22.5 1.5E+02 0.0032 25.8 4.5 29 88-119 4-33 (257)
459 PRK08243 4-hydroxybenzoate 3-m 22.4 1.3E+02 0.0029 28.4 4.5 31 86-119 2-32 (392)
460 PRK06924 short chain dehydroge 22.3 1.4E+02 0.0031 25.7 4.4 29 88-119 3-32 (251)
461 PF05834 Lycopene_cycl: Lycope 22.1 1.2E+02 0.0026 28.9 4.2 31 88-119 1-31 (374)
462 PRK05714 2-octaprenyl-3-methyl 22.0 1.3E+02 0.0028 28.5 4.3 30 87-119 3-32 (405)
463 PRK12828 short chain dehydroge 21.9 1.5E+02 0.0032 25.0 4.3 30 87-119 8-38 (239)
464 PF01494 FAD_binding_3: FAD bi 21.8 1.6E+02 0.0034 26.4 4.6 31 87-120 2-32 (356)
465 PLN02653 GDP-mannose 4,6-dehyd 21.7 1.3E+02 0.0028 27.6 4.2 30 87-119 7-37 (340)
466 PF01210 NAD_Gly3P_dh_N: NAD-d 21.6 1.1E+02 0.0024 25.5 3.4 100 88-209 1-103 (157)
467 PRK07774 short chain dehydroge 21.5 1.6E+02 0.0035 25.3 4.5 30 87-119 7-37 (250)
468 PRK05993 short chain dehydroge 21.4 1.6E+02 0.0034 26.3 4.5 30 87-119 5-35 (277)
469 PRK06847 hypothetical protein; 21.4 1.4E+02 0.0031 27.6 4.4 31 86-119 4-34 (375)
470 TIGR02622 CDP_4_6_dhtase CDP-g 21.3 1.5E+02 0.0033 27.4 4.6 30 87-119 5-35 (349)
471 PRK13587 1-(5-phosphoribosyl)- 21.3 1.1E+02 0.0025 27.6 3.6 26 181-206 79-104 (234)
472 PRK12384 sorbitol-6-phosphate 21.2 1.6E+02 0.0035 25.5 4.5 29 88-119 4-33 (259)
473 PRK07688 thiamine/molybdopteri 21.2 1.2E+02 0.0025 29.2 3.9 22 87-108 25-46 (339)
474 PLN02520 bifunctional 3-dehydr 21.1 2.9E+02 0.0062 28.2 6.8 31 87-120 380-410 (529)
475 COG0579 Predicted dehydrogenas 21.1 1.7E+02 0.0037 29.3 5.1 36 85-121 2-37 (429)
476 PRK07364 2-octaprenyl-6-methox 21.0 2E+02 0.0043 27.1 5.4 23 85-107 17-39 (415)
477 COG4995 Uncharacterized protei 21.0 35 0.00075 34.2 0.2 71 135-210 279-361 (420)
478 KOG0022 Alcohol dehydrogenase, 21.0 2.1E+02 0.0045 28.2 5.4 31 87-119 194-224 (375)
479 PRK05690 molybdopterin biosynt 20.8 1.3E+02 0.0029 27.3 4.0 22 87-108 33-54 (245)
480 PRK07024 short chain dehydroge 20.8 1.7E+02 0.0036 25.6 4.5 30 87-119 3-33 (257)
481 PRK11154 fadJ multifunctional 20.7 2.3E+02 0.0049 30.0 6.1 54 59-118 286-339 (708)
482 COG0644 FixC Dehydrogenases (f 20.6 1.6E+02 0.0036 28.1 4.8 33 85-120 2-34 (396)
483 PRK08618 ornithine cyclodeamin 20.5 1.5E+02 0.0032 28.0 4.3 33 87-121 128-160 (325)
484 PRK13512 coenzyme A disulfide 20.5 1.8E+02 0.0039 28.3 5.0 34 87-121 2-35 (438)
485 PRK09897 hypothetical protein; 20.5 1.5E+02 0.0032 30.5 4.5 33 87-120 2-34 (534)
486 PRK01390 murD UDP-N-acetylmura 20.4 1.4E+02 0.003 29.2 4.3 22 87-108 10-31 (460)
487 PF13241 NAD_binding_7: Putati 20.3 1.4E+02 0.0031 23.1 3.6 31 87-120 8-38 (103)
488 TIGR02360 pbenz_hydroxyl 4-hyd 20.2 1.5E+02 0.0033 28.2 4.5 23 85-107 1-23 (390)
489 TIGR01963 PHB_DH 3-hydroxybuty 20.2 1.6E+02 0.0035 25.2 4.2 29 88-119 3-32 (255)
490 TIGR01757 Malate-DH_plant mala 20.1 1.1E+02 0.0025 30.1 3.6 25 85-109 43-68 (387)
491 PRK07523 gluconate 5-dehydroge 20.0 1.8E+02 0.0038 25.3 4.5 30 87-119 11-41 (255)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=6.4e-74 Score=554.34 Aligned_cols=257 Identities=84% Similarity=1.262 Sum_probs=235.3
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCCCcccccccccccccCcccccccccccccCCCCHHHHHHHhhcccccCCCCCcccc
Q 024349 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (269)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (269)
+|||||++|||+++|++|+++ .++.+|++|+|||++++++|.....+.+|.+.++.++..+..+ ....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhhhcc-ccccccc
Confidence 699999999999999999886 2667899999999999999977777889999999998775333 5566667
Q ss_pred ccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEE
Q 024349 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (269)
Q Consensus 83 ~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (269)
++|++||||||||||||+++|+++++.+++++||+|||+.++++++|||||||+||+|+++|++.+++.|.+||+.|+|+
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 88989999999999999999998876435799999999999999999999999999999999864578899999999999
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhH
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTT 242 (269)
++++|.++||+++|+||||||||.|+++++++.|+++|||||+||+|++++|+|+||||||++.|++..++|||||||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999988778999999999999863368999999999
Q ss_pred HhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 243 NCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 243 n~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|||+|++|+|||+|||++++||| ||+
T Consensus 232 NcLAPvlkvL~d~fGI~~g~mTTvHs~ 258 (442)
T PLN02237 232 NCLAPFVKVLDEEFGIVKGTMTTTHSY 258 (442)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEec
Confidence 99999999999999999999999 986
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=4.3e-64 Score=481.85 Aligned_cols=228 Identities=65% Similarity=1.058 Sum_probs=205.5
Q ss_pred cccccccCcccccccccccccCCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCce
Q 024349 35 LDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 114 (269)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~ 114 (269)
.+|++|+|||++++.+|+......++ ++.++..+ .......+..++|++||||||||||||.++|+|+++.++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~e 88 (395)
T PLN03096 13 KGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLD 88 (395)
T ss_pred CcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCeE
Confidence 48999999999888888655445444 77777654 332445566777889999999999999999999988666799
Q ss_pred EEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCCCCCCCCCCCccEEEEcCCCCCChhhHH
Q 024349 115 VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (269)
Q Consensus 115 iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~ 194 (269)
+++|||+.++++++|||+|||+||+|+++++..+++.|.+||++|++++++||+++||+++|+||||||||.|+++++++
T Consensus 89 vvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~ 168 (395)
T PLN03096 89 VVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAG 168 (395)
T ss_pred EEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHH
Confidence 99999999999999999999999999999976467899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 195 ~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|+++|||||+||+|.++ |+|+||||||++.|++. ++||||||||||||+|++|+|||+|||++++||| ||+
T Consensus 169 ~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~ 241 (395)
T PLN03096 169 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSY 241 (395)
T ss_pred HHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEcc
Confidence 999999999999999765 78999999999999876 7899999999999999999999999999999999 986
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-63 Score=469.45 Aligned_cols=183 Identities=44% Similarity=0.747 Sum_probs=169.2
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC--CCCceEEEEcCC-CCcccccccccccccccccCceEEEe-------cCCeEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETISV 154 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~--~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~-------~~~~L~i 154 (269)
|++||||||||||||+++|+++++. ..++++|+|||+ .++++++|||||||+||+|+++|+.+ +++.|++
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 5689999999999999999988752 246999999995 89999999999999999999999862 4788999
Q ss_pred CCEEEEEE-ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCc
Q 024349 155 DGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN 233 (269)
Q Consensus 155 nGk~I~V~-~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~ 233 (269)
||++|+++ +++||+++||+++|+||||||||.|++++.++.||++||||||||||+++ +.|+|||||||+.|++..++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccCc
Confidence 99999996 99999999999999999999999999999999999999999999999876 45899999999999872278
Q ss_pred eEEcCChhHHhHHHHHHHH-hhhcCceEEEEee-ecc
Q 024349 234 IVSNASCTTNCLAPFVKVM-DEELGKQSDLLND-HSV 268 (269)
Q Consensus 234 IISnaSCTTn~LaPvlkvL-~d~fGI~~g~vTT-hsv 268 (269)
||||||||||||+|++|+| ||+|||++|+||| ||.
T Consensus 161 IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHay 197 (361)
T PTZ00434 161 VVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSY 197 (361)
T ss_pred EEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecc
Confidence 9999999999999999999 7999999999999 984
No 4
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-62 Score=477.51 Aligned_cols=212 Identities=31% Similarity=0.554 Sum_probs=193.6
Q ss_pred cccccccCCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCC--CCCceEEEEc----CCC
Q 024349 49 ATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSG 122 (269)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~--~~~l~iVaIn----d~~ 122 (269)
+.|..++++.++++||+++|++.+++... .++.||||||||||||+++|+++++. +.++++|+|| |..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~ 169 (477)
T PRK08289 96 VKYKAEGDGSDVEAFVAEELADAVGGADD------IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEG 169 (477)
T ss_pred HHHhhccCCCcHHHHHHHHHhhhhcCCCC------CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCC
Confidence 45655577889999999999998666432 25689999999999999999999863 2579999995 568
Q ss_pred CcccccccccccccccccCceEEEe-cCCeEEECCEEEEEEecCCCCCCCCCCCCcc--EEEEcCCCCCChhhHHHHHH-
Q 024349 123 GVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ- 198 (269)
Q Consensus 123 ~~~~~a~LlkyDS~hG~f~g~v~~~-~~~~L~inGk~I~V~~~~~P~~i~w~~~gvD--iVve~TG~f~~~e~a~~Hl~- 198 (269)
+++++||||||||+||+|+++++++ +++.|++||+.|+++++++|+++||+++|+| +||||||.|++++++++||+
T Consensus 170 d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~ 249 (477)
T PRK08289 170 DLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249 (477)
T ss_pred CHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhc
Confidence 9999999999999999999999986 3789999999999999999999999999999 99999999999999999999
Q ss_pred cCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 199 aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+||||||||||+|+ |+|+||||||++.|+++ ++||||||||||||+|++|+|||+|||++|+||| ||+
T Consensus 250 ~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~ 318 (477)
T PRK08289 250 KGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSY 318 (477)
T ss_pred cCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecc
Confidence 79999999999987 78999999999999876 7899999999999999999999999999999999 986
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-60 Score=447.39 Aligned_cols=182 Identities=61% Similarity=1.054 Sum_probs=171.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
|+||||||||||||+++|+++++++.++++|+|||+.++++++|||||||+||+|++++++ +++.|.+||++|++++++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcC
Confidence 3699999999999999999887643579999999999999999999999999999999997 578999999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|++++|+|+||||||++.|++.+++||||||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 99999999999999999999999999999999999999999999988788999999999999853368999999999999
Q ss_pred HHHHHHHhhhcCceEEEEee-ecc
Q 024349 246 APFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 246 aPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|++|+||++|||++++||| ||+
T Consensus 160 ap~lkvL~~~fgI~~~~mTTiha~ 183 (337)
T PRK07403 160 APIAKVLHDNFGIIKGTMTTTHSY 183 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEeee
Confidence 99999999999999999999 986
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-59 Score=443.89 Aligned_cols=179 Identities=44% Similarity=0.768 Sum_probs=169.5
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|++++++ +++.|++||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 447999999999999999999876 46999999995 7999999999999999999999998 5788999999999999
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHH
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn 243 (269)
++||+++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++ |+|+||||||++.|++. ++||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999999764 78999999999999876 789999999999
Q ss_pred hHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 244 CLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 244 ~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
||+|++|+|||+|||+++.||| ||+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~~TT~ha~ 181 (337)
T PTZ00023 156 CLAPLAKVVNDKFGIVEGLMTTVHAS 181 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEec
Confidence 9999999999999999999999 986
No 7
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.7e-59 Score=441.92 Aligned_cols=177 Identities=45% Similarity=0.792 Sum_probs=168.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
++||||||||||||+++|+++++ +++++|+|||+.+++++||||||||+||+|+++|++ +++.|.+||+.|.+++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEcC
Confidence 47999999999999999998876 469999999999999999999999999999999987 578899999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
+|+++||+++|+|+||||||.|++++++++|+++|||||++|+|.++ |+|+||||||++.|++ ++||||||||||||
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~L 155 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNCL 155 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHHH
Confidence 99999999999999999999999999999999999999999999654 7899999999999964 58999999999999
Q ss_pred HHHHHHHhhhcCceEEEEee-ecc
Q 024349 246 APFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 246 aPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|++|+|||+|||++++||| ||+
T Consensus 156 apvlk~L~~~fgI~~g~mTTvha~ 179 (331)
T PRK15425 156 APLAKVINDNFGIIEGLMTTVHAT 179 (331)
T ss_pred HHHHHHHHHhCCeEEEEEEEEEec
Confidence 99999999999999999999 985
No 8
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-59 Score=438.93 Aligned_cols=179 Identities=50% Similarity=0.835 Sum_probs=170.3
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
++||||||||||||+++|++.++.. ++++|+|||+.+++++||||+|||+||+|.++++. +++.+.+||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 3799999999999999999999852 69999999999999999999999999999999985 678999999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHc-CCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~a-GakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (269)
+|+++||.++|+|+||||||.|+++|.+++|+++ |||||++|||+++ |+++||||||++.|++. ++||||+||||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 6999999999987 58999999999999986 8999999999999
Q ss_pred HHHHHHHHhhhcCceEEEEee-ecc
Q 024349 245 LAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 245 LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|++|+|+|+|||++|+||| |+.
T Consensus 157 Lap~~kvl~d~fGI~~g~mTtVh~~ 181 (335)
T COG0057 157 LAPVAKVLNDAFGIEKGLMTTVHAY 181 (335)
T ss_pred hHHHHHHHHHhcCeeEEEEEEEEcc
Confidence 999999999999999999999 974
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-58 Score=436.81 Aligned_cols=180 Identities=52% Similarity=0.814 Sum_probs=168.7
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|++++++ +++.|.+||++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 457999999999999999999876 469999999999999999999999999999999997 67899999999999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHh
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (269)
++|+++||++.|+|+||||||.|+++++++.|+++|||||++|+|++++|+ ++|+|||++.|++..++|||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~-~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDV-TIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCC-cEEecccHHHhccCCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999887555 5689999999987226899999999999
Q ss_pred HHHHHHHHhhhcCceEEEEee-ecc
Q 024349 245 LAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 245 LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|++|+||++|||++++||| ||+
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~ 181 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAY 181 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecc
Confidence 999999999999999999999 986
No 10
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-58 Score=435.44 Aligned_cols=178 Identities=25% Similarity=0.458 Sum_probs=167.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccC-ceEEEecCCeEEECC-EEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~-g~v~~~~~~~L~inG-k~I~V 161 (269)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ +++++ +++.|.+|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 347999999999999999999876 46999999995 79999999999999999996 68987 578899999 89999
Q ss_pred EecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChh
Q 024349 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT 241 (269)
Q Consensus 162 ~~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCT 241 (269)
+++++|+++||+++|+|+||||||.|++.+.+..|+++|||||||++|++ |+|+||||||++.|++. ++||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999985 57999999999999886 7899999999
Q ss_pred HHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 242 TNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 242 Tn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
||||+|++|+|||+|||++++||| ||.
T Consensus 155 Tn~LapvlkvL~~~fGI~~g~mTTvHs~ 182 (342)
T PTZ00353 155 AVALAPVIRALHEVYGVEECSYTAIHGM 182 (342)
T ss_pred HHHHHHHHHHHHHhcCeeEEEeeeeeec
Confidence 999999999999999999999999 985
No 11
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=5.8e-58 Score=431.21 Aligned_cols=178 Identities=53% Similarity=0.850 Sum_probs=168.5
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCC-eEEECCE-EEEEEecC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~-~L~inGk-~I~V~~~~ 165 (269)
||||||||||||+++|+++++.+.++++|+|||+.++++++|||||||+||+|+++|++ +++ .|.+||+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence 69999999999999999998643469999999999999999999999999999999998 466 7999999 99999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
+|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++++ +|+||||||++.|++. ++||||||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IISn~sCtTn~L 157 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIISNASCTTNCL 157 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEecCCchHHHH
Confidence 999999999999999999999999999999999999999999998874 8999999999999875 78999999999999
Q ss_pred HHHHHHHhhhcCceEEEEee-ecc
Q 024349 246 APFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 246 aPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|+||+||++|||+++.||| ||+
T Consensus 158 ap~lk~L~~~fgI~~~~~TTiha~ 181 (327)
T TIGR01534 158 APLAKVLDEAFGIVSGLMTTVHSY 181 (327)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEee
Confidence 99999999999999999999 986
No 12
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=8.3e-57 Score=434.01 Aligned_cols=178 Identities=50% Similarity=0.855 Sum_probs=167.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++||||||||||||+++|++.++ .++++|+|||+ .++++++|||||||+||+|+++|++.+++.|.+||+.|+|+++
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~ 162 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSK 162 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEec
Confidence 37999999999999999998864 35999999996 8999999999999999999999986457889999999999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHh
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (269)
++|+++||+++|+||||||||.|+++++++.|+++|||||||++|.+ |+|+||||||++.|++. ++|||||||||||
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~ 239 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNC 239 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHH
Confidence 99999999999999999999999999999999999999999999964 68999999999999876 7899999999999
Q ss_pred HHHHHHHHhhhcCceEEEEee-ecc
Q 024349 245 LAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 245 LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|++|+|||+|||++++||| |++
T Consensus 240 Lap~lk~L~~~fGI~~g~mTTvha~ 264 (421)
T PLN02272 240 LAPLAKVVHEEFGILEGLMTTVHAT 264 (421)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEEec
Confidence 999999999999999999999 986
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-56 Score=421.95 Aligned_cols=179 Identities=42% Similarity=0.735 Sum_probs=169.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCC-CCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~-~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||||||||||||.++|+|+++.+ .++++++|||+.++++++|||||||+||+|+++++. +++.|.+||++|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 689999999999999999998743 479999999999999999999999999999999987 688999999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCC-CCCCCeEEeecCccccCCCCCceEEcCChhHHh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNC 244 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k-~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~ 244 (269)
+|+++||+++|+|+||||||.|+++++++.|+++|||||++|+|++ +++ ++||||||++.|++. ++|||||||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCTTn~ 158 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVSNASCTTNC 158 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEECCchHHHH
Confidence 9999999999999999999999999999999999999999999975 434 599999999999876 7899999999999
Q ss_pred HHHHHHHHhhhcCceEEEEee-ecc
Q 024349 245 LAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 245 LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|++|+|||+|||++++||| ||+
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~ 183 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSA 183 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhh
Confidence 999999999999999999999 986
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.8e-55 Score=415.40 Aligned_cols=179 Identities=39% Similarity=0.676 Sum_probs=168.3
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
|++||||||||||||.++|++.++ .+++++++||+ .++++++|||||||+||+|+++++. +++.|.+||++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 347999999999999999998875 46999999995 7999999999999999999999987 6889999999999999
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHH
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTN 243 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn 243 (269)
+++|+++||+ |+|+||||||.|+++++++.|+++|||||++|+|++++|+|+||||||++.|++..++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 99999999999999999999999999999999999887889999999999998722689999999999
Q ss_pred hHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 244 CLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 244 ~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
||+|+||+|||+|||+++.||| ||+
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTvha~ 181 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDL 181 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEec
Confidence 9999999999999999999999 986
No 15
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=2.4e-55 Score=415.09 Aligned_cols=179 Identities=45% Similarity=0.805 Sum_probs=168.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCc-eEEEecCCeEEECCEEEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV 162 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g-~v~~~~~~~L~inGk~I~V~ 162 (269)
+++||||||||||||..+|.+.++ +++++|+|||+ .++++++|||||||+||+|++ +++.++++.|.+||++|+++
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 357999999999999999998865 46999999996 799999999999999999996 99976678899999999999
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhH
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTT 242 (269)
+++||+++||+++|+||||||||.|+++++++.|+++|||||+||+|++ |+|+||||||++.|++. ++|||||||||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTT 158 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTT 158 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchH
Confidence 9999999999999999999999999999999999999999999999974 57999999999999876 78999999999
Q ss_pred HhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 243 NCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 243 n~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|||+|+||+||++|||++++||| ||+
T Consensus 159 n~Lap~lk~L~~~fgI~~~~mTTiha~ 185 (338)
T PLN02358 159 NCLAPLAKVINDRFGIVEGLMTTVHSI 185 (338)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEEEee
Confidence 99999999999999999999999 986
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.5e-53 Score=400.93 Aligned_cols=178 Identities=43% Similarity=0.783 Sum_probs=167.4
Q ss_pred eEEEEcCChHHHHHHHHHHhCC-CCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~-~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
||||||||||||.++|+|+++. ..++++++|||..+.++++|||+|||+||+|+++++. +++.|.+||+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 3569999999999999999999999999999999987 6889999999999999999
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCC-CCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k-~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
|+++||+++|+|+||||||.|.+++++++|+++||++|++|+|.+ +.+ ++||||||++.|++. ++||||||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IISnasCtTn~l 157 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVSNASCTTNCI 157 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEeCCCcHHHHH
Confidence 999999999999999999999999999999999999999999965 334 489999999999876 78999999999999
Q ss_pred HHHHHHHhhhcCceEEEEee-ecc
Q 024349 246 APFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 246 aPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|++|+|||+|||++++||| ||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~ 181 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSA 181 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhh
Confidence 99999999999999999999 986
No 17
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=7.9e-51 Score=345.87 Aligned_cols=150 Identities=52% Similarity=0.864 Sum_probs=138.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCC-CcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~-~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||||||||||||+++|+++.+ +++++|+|||+. +++++||||||||+||+|+++++. +++.|.+||+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 5899999999999999999965 569999999996 999999999999999999999997 578899999999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCCh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSC 240 (269)
+|+++||+++|+|+|+||||.|++++.++.|+++||||||+|+|+++..+||||+|||++.|+++ ++|||+|||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccCC
Confidence 99999999999999999999999999999999999999999999987548999999999999997 599999999
No 18
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=9.1e-46 Score=313.65 Aligned_cols=149 Identities=54% Similarity=0.877 Sum_probs=139.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+||+|+|||||||.++|.+.++ +++++++|+|+.++++++|||+|||+||+|.++++. +++.|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 4899999999999999998865 469999999988999999999999999999999986 5788999999999999999
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCCh
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSC 240 (269)
|.++||+++|+|+||||||.|.+++.++.|+++||||||||+|+++ +.++||+|||++.|+++ ++|||||||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCCC
Confidence 9999999999999999999999999999999999999999999876 44699999999999986 679999999
No 19
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=324.55 Aligned_cols=162 Identities=46% Similarity=0.814 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCCCCCCCCCC
Q 024349 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (269)
Q Consensus 97 IGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~~~ 175 (269)
|||+++ + + .++++++|||+ .++++++|+|+|||+||+|++++++ ++..++++|++|+++++++|..++|.+.
T Consensus 1 ig~~~~---~-~--~~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-R--NSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-c--CCcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577776 2 4 34899999998 8999999999999999999999998 6788999999999999999999999999
Q ss_pred CccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhHHHHHHHHhhh
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~ 255 (269)
|+|+|+|+||.|.+.+++..|+++|+|||+||||+. |.|+||+|||+++|+++ ..||||+|||||||+|+.|+|||+
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnclaPlaKVi~d~ 150 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNCLAPLAKVIHDN 150 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhccccchhheeccc
Confidence 999999999999999999999999999999999995 58999999999999987 569999999999999999999999
Q ss_pred cCceEEEEee-ecc
Q 024349 256 LGKQSDLLND-HSV 268 (269)
Q Consensus 256 fGI~~g~vTT-hsv 268 (269)
|||++|+||| |+.
T Consensus 151 fgI~EgLMtTvha~ 164 (285)
T KOG0657|consen 151 FGIMEGLMTTVHAI 164 (285)
T ss_pred cccccccccceeee
Confidence 9999999998 986
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.7e-37 Score=293.09 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=138.7
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcc---cccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 89 VaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~---~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
|||||||||||.++|++.++ +++++|+|||. +++ +++++++|||.|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD~-~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTKT-SPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEecC-ChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998765 56999999994 777 778888899999544435665 4566777764
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
++++. .++|+|+||||.+...+.++.|++.|+|+|++++|.++...++||+|+|++.|.+. + ||||+|||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~L 142 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTGL 142 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhhH
Confidence 44443 37999999999999999999999999999999999865324799999999999864 4 999999999999
Q ss_pred HHHHHHHhhhcCceEEEEee-ecc
Q 024349 246 APFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 246 aPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|++|+|+++|||++|.||| |+.
T Consensus 143 ap~~~~L~~~fGI~~~~~Ttvh~t 166 (333)
T TIGR01546 143 VRTLNAINDYSKVDKVRAVMVRRA 166 (333)
T ss_pred HHHHHHHHHhcCeEEEEEEEEeec
Confidence 99999999999999999999 974
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.98 E-value=4.3e-32 Score=256.50 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=132.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccccc---ccccccccCceEEEecCCeEEECCEEEEEE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~Llk---yDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (269)
++||||||||||||.++|++.++ +++++++|+|. ++++.+||++ || .||+++..+...++..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~------ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG------ 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC------
Confidence 37999999999999999998875 56999999996 6788899887 45 677766554311223344433
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCC--eEEeecCccccCCCCCceEEcCCh
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYVVGVNEKDYDHEVANIVSNASC 240 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip--~iV~GVN~~~~~~~~~~IISnaSC 240 (269)
+++++. .++|+||||||.+...+.++.|+++| ++||+++|.+. ++| +||+|||++.+... ++|+++||
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~--~~v~~~sC 140 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK--DYVRVVSC 140 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC--CcEEccCh
Confidence 233332 27999999999999999999999999 78999998654 333 47999999999764 49999999
Q ss_pred hHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 241 TTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 241 TTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|||||+|+||+||++|||+++.||| |++
T Consensus 141 tT~~l~~~l~~L~~~fgI~~~~vTtv~a~ 169 (341)
T PRK04207 141 NTTGLCRTLCALDRAFGVKKVRATLVRRA 169 (341)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEEcC
Confidence 9999999999999999999999999 985
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.92 E-value=1.6e-24 Score=203.69 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=125.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
++||| | +|.+||.++++|.+|+ |+ +.++ +||. |- -.+ .++.|.++|+.+.|..
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~---fp---v~~l-------~l~~--s~------~~s--~gk~i~f~g~~~~V~~-- 57 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSD---LE---IEQI-------SIVE--IE------PFG--EEQGIRFNNKAVEQIA-- 57 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcC---Cc---hhhe-------eecc--cc------ccc--CCCEEEECCEEEEEEE--
Confidence 68999 9 9999999999999986 45 4443 4543 20 011 4688999999999963
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec---CCCCCCCCeEEeecCccccCC-CCCceEEcCChh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---P~k~~Dip~iV~GVN~~~~~~-~~~~IISnaSCT 241 (269)
.++.+|. ++|+||+ +|...++++++...++|| ++|+. .++++|+|++||+||++.+.. .+.+||+||+||
T Consensus 58 -l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs 131 (322)
T PRK06901 58 -PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ 131 (322)
T ss_pred -CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence 5566785 8999999 999999999999999999 88854 369999999999999998765 215799999999
Q ss_pred HHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 242 TNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 242 Tn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|.+|++.||+||+.|||++..+|| |||
T Consensus 132 Ti~l~~aL~pL~~~~~l~rv~VsTyQav 159 (322)
T PRK06901 132 VSQLALALAPFLQEQPLSQIFVTSLLPA 159 (322)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecch
Confidence 999999999999999999999999 997
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.89 E-value=1.5e-22 Score=190.57 Aligned_cols=151 Identities=26% Similarity=0.375 Sum_probs=120.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||+|.| .|.+|+.++|+|.++..+.++++++... + + .++.+.++|+.+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~---------~--~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------R---------S--AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------c---------c--CCCeeeeCCceeEEe---
Confidence 5899999 9999999999998864444555444211 0 0 234455667666664
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE---ecCCCCCCCCeEEeecCccccCCC-CCceEEcCChh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII---TAPAKGADIPTYVVGVNEKDYDHE-VANIVSNASCT 241 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII---SAP~k~~Dip~iV~GVN~~~~~~~-~~~IISnaSCT 241 (269)
+++..+|. ++|+||+|+|.+.+++.+++|+++|+ +|| ++++.++|+|++++|||++.++.. +++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 45556784 89999999999999999999999999 677 334565578999999999998753 13799999999
Q ss_pred HHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 242 TNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 242 Tn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|++|.|++|+++|+|+++.||| |++
T Consensus 131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~ 158 (334)
T PRK14874 131 TIQMVVALKPLHDAAGIKRVVVSTYQAV 158 (334)
T ss_pred HHHHHHHHHHHHHhcCceEEEEEEEech
Confidence 999999999999999999999998 986
No 24
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.86 E-value=9.3e-22 Score=185.72 Aligned_cols=153 Identities=26% Similarity=0.366 Sum_probs=122.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCe-EEECCEEEEEEec
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVSN 164 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~-L~inGk~I~V~~~ 164 (269)
+||||.| +|.+|+.+++.|.+|.+ .+..+ ++|. | +.+ .|+. +.+.|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f-~~~~~------------~~~A--S-------~rS--aG~~~~~f~~~~~~v~~- 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF-PFEEL------------VLLA--S-------ARS--AGKKYIEFGGKSIGVPE- 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC-CcceE------------EEEe--c-------ccc--cCCccccccCccccCcc-
Confidence 6899999 99999999999998742 22211 2332 2 112 3444 788888766632
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCCCCCeEEeecCccccCCC-CCc-eEEcCC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VAN-IVSNAS 239 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~Dip~iV~GVN~~~~~~~-~~~-IISnaS 239 (269)
.-.+...|. ++||||+|.|...+++.+++..++|+ ++|+.. ++++|+|+||++||++.+... +.+ ||+||+
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpN 132 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPN 132 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCC
Confidence 125667886 89999999999999999999999998 999554 588899999999999876542 134 999999
Q ss_pred hhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 240 CTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 240 CTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|||.+|++.||+|+++|||++.++|| |||
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQAv 162 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQAV 162 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeehh
Confidence 99999999999999999999999999 987
No 25
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.86 E-value=1.9e-21 Score=183.99 Aligned_cols=150 Identities=25% Similarity=0.352 Sum_probs=115.3
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
||+|+| .|.+|+.++|+|.++..+.++++.+.. ++ + .+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as-------------~~---------~--~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLAS-------------DR---------S--AGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEec-------------cc---------c--CCCeeeeCCeeEEEEeC-C
Confidence 689999 999999999999876433333322211 11 1 34555566655555322 2
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec---CCCCCCCCeEEeecCccccCCC-CCceEEcCChhH
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---P~k~~Dip~iV~GVN~~~~~~~-~~~IISnaSCTT 242 (269)
+ ..| .++|+||+|+|.+.+++.+++|+++|+ +||+. +++++|+|++|+|||++.++.. .++|||||+|||
T Consensus 56 ~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 I--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred h--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 2 345 389999999999999999999999999 67843 4566578999999999988753 145999999999
Q ss_pred HhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 243 NCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 243 n~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|+++.|++|+++|+|+++.||| |++
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~v 156 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAV 156 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeech
Confidence 99999999999999999999998 986
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.86 E-value=9.8e-22 Score=188.01 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=120.9
Q ss_pred eeEEEEc-CChHHHHHHHHHH-hCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~-~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++|||+| +|.+|+.++++|. ++. |++ ... ++|. | .-+ .+..+.++|+.+.|..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~---fp~---~~~-------~~~s--s-------~~s--~g~~~~f~~~~~~v~~- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD---FDA---IRP-------VFFS--T-------SQL--GQAAPSFGGTTGTLQD- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC---Ccc---ccE-------EEEE--c-------hhh--CCCcCCCCCCcceEEc-
Confidence 3799999 9999999999888 554 442 111 2331 2 111 4567788888876653
Q ss_pred CCCCCC-CCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCCCCCeEEeecCccccCCC-CCce--EEc
Q 024349 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANI--VSN 237 (269)
Q Consensus 165 ~~P~~i-~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~Dip~iV~GVN~~~~~~~-~~~I--ISn 237 (269)
.+++ .|. ++|+||+|.|...+++++++..++|+..++|+.. ++++|+|++|++||++.+... +.+| |+|
T Consensus 56 --~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian 131 (366)
T TIGR01745 56 --AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG 131 (366)
T ss_pred --Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC
Confidence 3333 564 8999999999999999999999999444888554 588999999999999987642 1467 899
Q ss_pred CChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 238 ASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 238 aSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|||..|++.|++||++|||+++.+|| |||
T Consensus 132 PNCst~~l~~aL~pL~~~~~i~~v~VsTyQAv 163 (366)
T TIGR01745 132 GNCTVSLMLMSLGGLFANDLVEWVSVATYQAA 163 (366)
T ss_pred cCHHHHHHHHHHHHHHhccCccEEEEEechhh
Confidence 9999999999999999999999999999 987
No 27
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.77 E-value=2.8e-18 Score=163.39 Aligned_cols=153 Identities=18% Similarity=0.336 Sum_probs=120.5
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
..+||||+| +|.+|+.++|+|.+.. .|++ .++ +++ .| .-+ .|+.+.+.|+.+.+..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS-------~~s--aGk~~~~~~~~l~v~~ 60 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SS-------KRS--AGKTVQFKGREIIIQE 60 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--EC-------ccc--CCCCeeeCCcceEEEe
Confidence 347999999 9999999999998542 3552 211 122 12 112 4677888888766654
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec---CCCCCCCCeEEeecCccccCCCCCceEEcCCh
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDHEVANIVSNASC 240 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---P~k~~Dip~iV~GVN~~~~~~~~~~IISnaSC 240 (269)
. +++ .|. ++|+||.|+|...+++.+++..++|+ +||+. .++++|+|++|++||.+.+... .+||+||+|
T Consensus 61 ~-~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIanPnC 132 (347)
T PRK06728 61 A-KIN--SFE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAVPNC 132 (347)
T ss_pred C-CHH--Hhc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEECCCC
Confidence 3 454 453 79999999999999999999999998 66743 3577899999999999988764 479999999
Q ss_pred hHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 241 TTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 241 TTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|.+++..|++|+++|+|++..++| |+|
T Consensus 133 ~tt~~~laL~PL~~~~~i~~v~V~t~qav 161 (347)
T PRK06728 133 SALQMVTALQPIRKVFGLERIIVSTYQAV 161 (347)
T ss_pred HHHHHHHHHHHHHHcCCccEEEEEEeecc
Confidence 9999999999999999999999988 886
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.77 E-value=7.4e-18 Score=159.88 Aligned_cols=153 Identities=21% Similarity=0.269 Sum_probs=120.4
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+++||||.| +|.+|+.++|+|.+++.+.++++.+.. ++ + .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~~---------s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------EE---------S--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------cC---------c--CCceEEECCcceEEE-
Confidence 457999999 999999999999987544455433321 11 1 456677778766664
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec---CCCCCCCCeEEeecCccccCC-CCCceEEcCC
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA---PAKGADIPTYVVGVNEKDYDH-EVANIVSNAS 239 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA---P~k~~Dip~iV~GVN~~~~~~-~~~~IISnaS 239 (269)
++++++|. ++|+||.|++...+++.++...++|+ +||+. .+.++|+|.++++||.+.++. .+.+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 56678885 79999999999999999999999999 56633 255568999999999943332 1157999999
Q ss_pred hhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 240 CTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 240 CTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+|.+++..|+||+++++|++..|++ |+|
T Consensus 132 C~~t~~~laL~PL~~~~~i~~viV~t~qgv 161 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQAGLSRLHVTNLLSA 161 (336)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEeeccc
Confidence 99999999999999999999999988 876
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.76 E-value=4.1e-18 Score=163.38 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=116.8
Q ss_pred eeEEEEc-CChHHHHHHH-HHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR-~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++|||+| +|.+|+.++| +|.++. ++ +.++ ++ +.|.+ + .+..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~---f~---~~~l-------~~--~ss~~-------s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEND---FD---LIEP-------VF--FSTSQ-------A--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCC---CC---cCcE-------EE--ecchh-------h--CCcccccCCCcceEEec
Confidence 6899999 9999999998 555543 44 1211 11 12210 1 23335677877777654
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCCCCCeEEeecCccccCCC-CC--ceEEcC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VA--NIVSNA 238 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~Dip~iV~GVN~~~~~~~-~~--~IISna 238 (269)
.+++ +|. ++|+||+|+|...+++.+++..++|++.+||+.. ++++|+|++|++||++.+... +. ++|+||
T Consensus 58 ~~~~--~~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDID--ALK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChh--Hhc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 4444 353 7999999999999999999999999654788543 588899999999999987642 12 489999
Q ss_pred ChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 239 SCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 239 SCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+|+|.+++..|++|+++++|++..+|| |+|
T Consensus 134 nC~tt~~~laL~PL~~~~~i~~viVst~qav 164 (369)
T PRK06598 134 NCTVSLMLMALGGLFKNDLVEWVSVMTYQAA 164 (369)
T ss_pred ChHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 999999999999999999999999998 986
No 30
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.69 E-value=2.4e-16 Score=149.43 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=115.8
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++||+|.| +|.+|+.++|+|.++..+.++++.+... + + .++.|.++|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~---------~--aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------E---------S--AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------c---------c--CCCeeccCCcceEEe--
Confidence 37999999 9999999999999765444454444321 0 1 244555666555553
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC-CCCCCCCeEEeecCccccCC-CCCceEEcCChhH
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-EVANIVSNASCTT 242 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~Dip~iV~GVN~~~~~~-~~~~IISnaSCTT 242 (269)
+++..+|. ++|+||.+++.....++++..+++|++-|=+|+. +.+ |+|.+|++||.+.+.. .+.+||+||+|+|
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~ 133 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVSSPSASA 133 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHccccCCCEEECCCcHH
Confidence 23334463 8999999999988999999888999843223443 454 8999999999998765 2147999999999
Q ss_pred HhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 243 NCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 243 n~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
.+++..|++|++.|++++..+++ |+|
T Consensus 134 t~~~laL~PL~~~~~~~~v~v~t~~~v 160 (336)
T PRK05671 134 VALAVALAPLKGLLDIQRVQVTACLAV 160 (336)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEeecC
Confidence 99999999999999999999988 876
No 31
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.69 E-value=2.6e-16 Score=149.58 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=116.0
Q ss_pred cceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEE
Q 024349 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (269)
Q Consensus 84 ~~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (269)
..++||+|.| .|.+|+.++|+|.++..+.+++..+. |.. + .++.+..+|+.+.+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~r-------s--aGk~~~~~~~~~~v~ 60 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SAR-------S--AGKKVTFEGRDYTVE 60 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccC-------C--CCCeeeecCceeEEE
Confidence 3567999999 99999999999988644334433331 100 1 344555566555443
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ec-CCCCCCCCeEEeecCccccCCC-----CCce
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TA-PAKGADIPTYVVGVNEKDYDHE-----VANI 234 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SA-P~k~~Dip~iV~GVN~~~~~~~-----~~~I 234 (269)
. -+++ .|. ++|+||.|+|...+++++++..++|+ +|| |+ .++++++|.++++||.+.+... +.+|
T Consensus 61 ~-~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 61 E-LTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred e-CCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 2 2333 343 79999999999999999998888998 555 43 3566789999999999987653 1349
Q ss_pred EEcCChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 235 VSNASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 235 ISnaSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+||+|+|.+++..|++|+++++|++..++| |+|
T Consensus 134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~v 168 (344)
T PLN02383 134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAA 168 (344)
T ss_pred EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecc
Confidence 9999999999999999999999999999988 876
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.65 E-value=1.1e-15 Score=144.86 Aligned_cols=163 Identities=23% Similarity=0.331 Sum_probs=110.6
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE-cCCCCccc-ccccccccccccccCceEEEecCCeEEECCEEEEE
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI-nd~~~~~~-~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (269)
|++||+|+| +|.+|+.++|+|.++ +.++++++ ........ +..++.+. .+|.+.+.. +.+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~-~~~~~~~~~------------~~~~v 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQ-LDGPIPEEV------------ADMEV 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCccccccccc-ccccccccc------------cceEE
Confidence 468999999 999999999999865 45788887 43211110 10010000 001111100 12333
Q ss_pred EecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC-CCCCCCCeEEeecCccccCC-C--------C
Q 024349 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E--------V 231 (269)
Q Consensus 162 ~~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~Dip~iV~GVN~~~~~~-~--------~ 231 (269)
. ..+|+. |. ++|+|++|++.....+.++..++.|++.+.+|+. +..++.|.+++++|++.|.. + +
T Consensus 67 ~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 67 V-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred E-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 2 234553 32 7899999999998888887777889865555543 33346799999999876531 1 0
Q ss_pred CceEEcCChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 232 ANIVSNASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 232 ~~IISnaSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
.+|||||+|+|+|+++.|++|++ |||+++.||+ |++
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~ 178 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAI 178 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEecc
Confidence 25999999999999999999999 9999999998 876
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.65 E-value=9.3e-16 Score=144.89 Aligned_cols=162 Identities=21% Similarity=0.292 Sum_probs=111.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCC-Cc-ccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~-~~-~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+||+|+| .|.+|+.++|+|.+++ .++++++-+.. .. +....++.+. .|+.+.+ .+ ..+.+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~~--------~~----~~~~~~- 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASPRSAGKRYGEAVKWI-EPGDMPE--------YV----RDLPIV- 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEEChhhcCCcchhhcccc-ccCCCcc--------cc----ceeEEE-
Confidence 4899999 8999999999988764 47887774320 00 1111111100 0000000 00 112232
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC-CCCCCCCeEEeecCccccCC-C-------CCce
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E-------VANI 234 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~Dip~iV~GVN~~~~~~-~-------~~~I 234 (269)
.-+++ .| .++|+|++|++.....+.+....++|++.+.+|+. +.+++.|.+++++|++.|.. + +.+|
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 12333 34 37999999999999999998888899965555553 45567899999999886642 1 1359
Q ss_pred EEcCChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 235 VSNASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 235 ISnaSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|+||+|+|+|+++.|++|+++++|+++.||+ |++
T Consensus 141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gv 175 (341)
T TIGR00978 141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAV 175 (341)
T ss_pred EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEcc
Confidence 9999999999999999999999999999988 875
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.49 E-value=3.2e-13 Score=127.96 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=109.1
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCE-EEEEE
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVV 162 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk-~I~V~ 162 (269)
|++||+|.| .|.+|+.++|.|.++ +.++++++-+.... ...+. ..|+.+. +. ...+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~---g~~l~--~~~~~~~--------------~~~~~~~- 58 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSA---GKPLS--DVHPHLR--------------GLVDLVL- 58 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECcccc---CcchH--HhCcccc--------------cccCcee-
Confidence 357999999 799999999999865 35787777553110 00110 1111111 10 0111
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCC-C------------------CCeEEe
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-D------------------IPTYVV 220 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~-D------------------ip~iV~ 220 (269)
. +.++..|. ++|+|+.|++.....+.+...+++|+ +||+.. ++++ | .|..++
T Consensus 59 ~--~~~~~~~~--~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 E--PLDPEILA--GADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred e--cCCHHHhc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 1 12222343 69999999999999999999888887 666432 4533 4 789999
Q ss_pred ecCccccCCCCCceEEcCChhHHhHHHHHHHHhhhcCce--EEEEee-ecc
Q 024349 221 GVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGKQ--SDLLND-HSV 268 (269)
Q Consensus 221 GVN~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~fGI~--~g~vTT-hsv 268 (269)
++|.+.+.. .+||+||+|+|.++...|++|++..+|+ +.++++ |++
T Consensus 133 e~~~~~i~~--~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~ 181 (343)
T PRK00436 133 ELNREEIKG--ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGV 181 (343)
T ss_pred ccCHHHhcC--CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEec
Confidence 999998875 4799999999999999999999999898 888888 875
No 35
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.41 E-value=1.3e-12 Score=124.11 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=106.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCE-EEEEEec
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVVSN 164 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk-~I~V~~~ 164 (269)
+||+|.| +|.+|+.++|.|.++ +.++++++-+... .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 4899999 799999999999865 4577775522200 000000 11111111 10 0112 11
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ecC-CCCC-------------------CCCeEEeec
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TAP-AKGA-------------------DIPTYVVGV 222 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SAP-~k~~-------------------Dip~iV~GV 222 (269)
.++++ |.+ ++|+||.|++....++.+.+.+++|+ +|| |+. ++++ +.|..++++
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12322 322 79999999999999999999888886 455 433 4553 589999999
Q ss_pred CccccCCCCCceEEcCChhHHhHHHHHHHHhhhcCce--EEEEee-ecc
Q 024349 223 NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGKQ--SDLLND-HSV 268 (269)
Q Consensus 223 N~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~fGI~--~g~vTT-hsv 268 (269)
|.+.+.. .+||+||+|.|.++...|+||++++.|+ +..+++ ++|
T Consensus 135 n~~~i~~--~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgv 181 (346)
T TIGR01850 135 HREEIKG--ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGV 181 (346)
T ss_pred CHHHhCC--CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEC
Confidence 9998865 4799999999999999999999998887 677877 765
No 36
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.35 E-value=4.1e-12 Score=119.85 Aligned_cols=137 Identities=13% Similarity=0.109 Sum_probs=101.2
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
|++||||.| +|.+|+.++|+|.+++ .++++.+... ++..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 568999999 9999999999999875 4666554321 01101
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ec-CCCCCCCCeEEeecCccc---cCCCCCceEEc
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TA-PAKGADIPTYVVGVNEKD---YDHEVANIVSN 237 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SA-P~k~~Dip~iV~GVN~~~---~~~~~~~IISn 237 (269)
.+.+..|. ++|+||.|++...+++++++..+.|+ +|| |+ .+.+++.|..++++|++. +.. .++|+|
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~--~~~Ian 113 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAA--AKRVAN 113 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhc--CCeEEc
Confidence 11122454 68999999999999999998888899 455 43 356668999999999653 333 579999
Q ss_pred CChhHHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 238 ASCTTNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 238 aSCTTn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
|.|.+.++...|+||+++..|++..+++ +++
T Consensus 114 PgC~~Ta~~laL~PL~~~~li~~~~~i~i~a~ 145 (313)
T PRK11863 114 PGCYPTGAIALLRPLVDAGLLPADYPVSINAV 145 (313)
T ss_pred CCcHHHHHHHHHHHHHHcCCcccCceEEEEEc
Confidence 9999999999999999975565543343 654
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.32 E-value=9.3e-12 Score=120.06 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=103.2
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+++||+|.| +|.+|+.++|+|.+++ .++++.+... +..|+ .+.. .. ..+.+....-+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~-------------~saG~---~i~~-~~--~~l~~~~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD-------------RKAGQ---SFGS-VF--PHLITQDLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh-------------hhcCC---Cchh-hC--ccccCcccccee
Confidence 567999999 9999999999999874 4666555321 11111 0000 00 001111111111
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ec-CCCCCC--------CCeEEeecCccc-cC---
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TA-PAKGAD--------IPTYVVGVNEKD-YD--- 228 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SA-P~k~~D--------ip~iV~GVN~~~-~~--- 228 (269)
.-++ .+|. ++|+||.|+|....++.++. ++.|+ +|| |+ ...+++ .|..++++|.+. |.
T Consensus 96 ~~~~--~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE 168 (381)
T PLN02968 96 AVKD--ADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE 168 (381)
T ss_pred cCCH--HHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence 1122 2353 79999999999888888887 57776 344 43 345556 788888888763 43
Q ss_pred ------CCCCceEEcCChhHHhHHHHHHHHhhhcCc--eEEEEee-ecc
Q 024349 229 ------HEVANIVSNASCTTNCLAPFVKVMDEELGK--QSDLLND-HSV 268 (269)
Q Consensus 229 ------~~~~~IISnaSCTTn~LaPvlkvL~d~fGI--~~g~vTT-hsv 268 (269)
.. .++|+||+|.|.++...|++|+++++| ++..+++ ++|
T Consensus 169 ~~r~~i~~-~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgv 216 (381)
T PLN02968 169 LQREEIKS-ARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGV 216 (381)
T ss_pred hCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeec
Confidence 22 579999999999999999999999999 6788877 765
No 38
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.30 E-value=9e-12 Score=117.05 Aligned_cols=154 Identities=23% Similarity=0.180 Sum_probs=105.3
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
+++||||+|+|.||+.++..+.+. +.++++++-+. +++... +++-.-+|. ... ..+-. .+.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~g--la~A~~~Gi---~~~--------~~~ie-~LL-- 63 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESDG--LARARRLGV---ATS--------AEGID-GLL-- 63 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhHH--HHHHHHcCC---Ccc--------cCCHH-HHH--
Confidence 358999999999999988777653 46899999876 333211 111111221 000 01100 011
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEe-cCCCCCCCCeEEeecCccccCCC-CCceEEcCChhH
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEKDYDHE-VANIVSNASCTT 242 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIIS-AP~k~~Dip~iV~GVN~~~~~~~-~~~IISnaSCTT 242 (269)
+..+|. ++|+|+++||.....+.+.+.+++|+ .+|. .|.. +.|++||+||.+..... ..++|+|++|+|
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p~~at 134 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCGGQAT 134 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc--cCCcccCcCCHHHHhcccCCCEEECccHHH
Confidence 112454 69999999999999999999999998 5553 3443 57999999998876532 158999999999
Q ss_pred HhHHHHHHHHhhhcCceEEEEeeec
Q 024349 243 NCLAPFVKVMDEELGKQSDLLNDHS 267 (269)
Q Consensus 243 n~LaPvlkvL~d~fGI~~g~vTThs 267 (269)
+.++..|+++++. ++.+..-|.+|
T Consensus 135 i~~v~Al~~v~~~-~~~eIvat~~s 158 (302)
T PRK08300 135 IPIVAAVSRVAPV-HYAEIVASIAS 158 (302)
T ss_pred HHHHHHhcccCcC-ceeeeeeeehh
Confidence 9999999998765 77776633254
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.23 E-value=6.9e-12 Score=115.78 Aligned_cols=158 Identities=19% Similarity=0.319 Sum_probs=106.1
Q ss_pred eEE-EEc-CChHHHHHHHHHHhCCCCCceEEEE--cCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEE
Q 024349 88 KVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVV--NDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (269)
Q Consensus 88 kVa-InG-fGrIGR~llR~l~~r~~~~l~iVaI--nd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~ 162 (269)
|+| |.| +|.+|+.++-+|..++ .++|-+. ... .+-. |. .-|+|..+.-.-+ .-..+.|.
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgAS~RSAGK~---ya-----~a~~wkqt~~lp~------~~~e~~V~ 68 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGASKRSAGKR---YA-----FAGNWKQTDLLPE------SAHEYTVE 68 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeecccccccCCc---eE-----ecccchhcccccc------hhhhhhHh
Confidence 456 999 9999999999988774 3443322 211 0100 11 1133332221100 00233332
Q ss_pred ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCCCCCeEEeecCccccCC----------
Q 024349 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH---------- 229 (269)
Q Consensus 163 ~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~Dip~iV~GVN~~~~~~---------- 229 (269)
+-+++.| .++|||+...+.....|--+...++|. +|+|.. ++.+++|++|+.||++.++.
T Consensus 69 -ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~ 141 (361)
T KOG4777|consen 69 -ECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKM 141 (361)
T ss_pred -hcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCC
Confidence 3356655 389999999999888888778888888 788653 46678999999999986532
Q ss_pred CCCceEEcCChhHHhHHHHHHHHhhhcC-ceEEEEee-ecc
Q 024349 230 EVANIVSNASCTTNCLAPFVKVMDEELG-KQSDLLND-HSV 268 (269)
Q Consensus 230 ~~~~IISnaSCTTn~LaPvlkvL~d~fG-I~~g~vTT-hsv 268 (269)
.+--||+|++|+|..++..||+||++|| |.+..+|| |++
T Consensus 142 ~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAi 182 (361)
T KOG4777|consen 142 GKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAI 182 (361)
T ss_pred CCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhh
Confidence 2245999999999999999999999995 66666667 875
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.12 E-value=3e-10 Score=107.19 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=99.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
.||+|.| .|-.|..++|+|..+ +.++++.+... + . +...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~-------------~--------------~-----------~~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD-------------R--------------R-----------KDAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc-------------c--------------c-----------cCcC
Confidence 4899999 999999999999887 45776666421 0 0 0001
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ecC-CCCCCCCeEEeecCccccCC-CCCceEEcCChh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TAP-AKGADIPTYVVGVNEKDYDH-EVANIVSNASCT 241 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SAP-~k~~Dip~iV~GVN~~~~~~-~~~~IISnaSCT 241 (269)
+++++ + .++|+||.|++...+++.++...++|+ +|| |+. +.+++.|..++++|.+..+. .+.++|+||.|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 22222 1 268999999999999999998888888 455 432 56668999999998653321 115799999999
Q ss_pred HHhHHHHHHHHhhhcCceEEEEee-ecc
Q 024349 242 TNCLAPFVKVMDEELGKQSDLLND-HSV 268 (269)
Q Consensus 242 Tn~LaPvlkvL~d~fGI~~g~vTT-hsv 268 (269)
+.++...|+||+++..|++..+++ +++
T Consensus 117 aTa~~LaL~PL~~~~li~~~~~~~~~a~ 144 (310)
T TIGR01851 117 PTGFIALMRPLVEAGILPADFPITINAV 144 (310)
T ss_pred HHHHHHHHHHHHHcCCccccceEEEEec
Confidence 999999999999986665553444 764
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.00 E-value=1.9e-09 Score=100.60 Aligned_cols=142 Identities=23% Similarity=0.198 Sum_probs=97.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+||||+|.|+||+.++..+.+. ..+++++|-+. +++... +++-..+|. ....++... ++ .+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e~-ll--~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVDG-LL--AN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHHH-Hh--cC
Confidence 6899999999999887766653 45899999876 333211 011111110 011111000 10 01
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCC-CCCceEEcCChhHHhH
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVSNASCTTNCL 245 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~-~~~~IISnaSCTTn~L 245 (269)
.++|+|+++|+.....+.+...+++|+ .||.-.|.. +.|++|+.||.+.... ...++|+++.|.|+.+
T Consensus 63 --------~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 63 --------PDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred --------CCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 268999999999999999999999997 333344542 5799999999886653 1158999999999999
Q ss_pred HHHHHHHhhhcCc
Q 024349 246 APFVKVMDEELGK 258 (269)
Q Consensus 246 aPvlkvL~d~fGI 258 (269)
+..++.+++...+
T Consensus 132 ~~al~r~~d~~~~ 144 (285)
T TIGR03215 132 VAAISRVAPVHYA 144 (285)
T ss_pred HHHHHHhhccccE
Confidence 9999999988755
No 42
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.70 E-value=1.4e-08 Score=82.35 Aligned_cols=115 Identities=23% Similarity=0.264 Sum_probs=74.7
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
||+|.| +|.+|+.++|+|.++ +.++++.+-.... . .-.++...++.+.+. ..+.+.. .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~-~---~g~~~~~~~~~~~~~-------------~~~~~~~-~~ 60 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSR-S---AGKPLSEVFPHPKGF-------------EDLSVED-AD 60 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTT-T---TTSBHHHTTGGGTTT-------------EEEBEEE-TS
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeecc-c---cCCeeehhccccccc-------------cceeEee-cc
Confidence 799999 999999999999985 4578776654311 0 001111222211111 1223322 23
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC---CCCCCCCeEEeecCccccC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYD 228 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~Dip~iV~GVN~~~~~ 228 (269)
++.+ .++|+||.|++....++.+++.++.|+ .||+.. +.+++.|+++++||.+.+.
T Consensus 61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 3333 389999999999999999999999999 566432 4555789999999988663
No 43
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.86 E-value=3.9e-05 Score=61.68 Aligned_cols=113 Identities=27% Similarity=0.279 Sum_probs=66.0
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
||+|.| .|++|+.+++.+.+.+ .++++++-.. + ......++ ..|++. . .+ +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~~~~----~------------~~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAGPHL----K------------GE-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHCccc----c------------cc-cc--cc
Confidence 689999 7999999999887653 4788777332 0 00000000 011100 0 00 11 11
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHH---HHHHcCCCEEEEec--C-CCCCCCCeEEeecCcccc
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITA--P-AKGADIPTYVVGVNEKDY 227 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~---~Hl~aGakkVIISA--P-~k~~Dip~iV~GVN~~~~ 227 (269)
.+..+|...+.|+||.|++.-...+.+. ..++.|+ ++|.. + ..++|.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2223444458899999999887777433 2334565 77733 2 455678999999997754
No 44
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.81 E-value=3.6e-05 Score=71.63 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=64.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
|.+||||+|+|.||+.+++.|.......+++++|.+. +.+....+. +. .++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~------------------------~~-~~~~-- 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALA------------------------GR-VALL-- 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhh------------------------cc-Cccc--
Confidence 3579999999999999999886532335788888765 111111110 00 1121
Q ss_pred CCCCCC-CCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEe
Q 024349 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (269)
Q Consensus 165 ~~P~~i-~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (269)
.+++++ .| ..|+||||.|.-.-++++++.|++|+.-+++|
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 345553 45 68999999999999999999999999877776
No 45
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00029 Score=67.78 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=90.1
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+++||+|.| .|-.|-.++|+|..++ ++++..+....... .. +...|..+.+-+ ..++ +
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~~~~g---~~--~~~~~p~l~g~~-------------~l~~-~ 59 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSRERAG---KP--VSDVHPNLRGLV-------------DLPF-Q 59 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeechhhcC---Cc--hHHhCccccccc-------------cccc-c
Confidence 457999999 9999999999999884 47754443220000 00 001111111110 0111 1
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE--ecC-CCC---------------C-CCCeEEeec--
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII--TAP-AKG---------------A-DIPTYVVGV-- 222 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII--SAP-~k~---------------~-Dip~iV~GV-- 222 (269)
.-+++++ ...++|+||-|+.--.+++.++..++.|++ || |+- +.. + ...--|||.
T Consensus 60 ~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE 135 (349)
T COG0002 60 TIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE 135 (349)
T ss_pred cCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence 1244444 234689999999999999999999999996 45 442 211 0 012456654
Q ss_pred -CccccCCCCCceEEcCChhHHhHHHHHHHHhhh
Q 024349 223 -NEKDYDHEVANIVSNASCTTNCLAPFVKVMDEE 255 (269)
Q Consensus 223 -N~~~~~~~~~~IISnaSCTTn~LaPvlkvL~d~ 255 (269)
|.+++.. .+.|+||.|-.+|....|+||-+.
T Consensus 136 l~~e~i~~--A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 136 LHREKIRG--AKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred cCHHHHhc--CCEeeCCCchHHHHHHHHHHHHHc
Confidence 4455654 479999999999988888888765
No 46
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.49 E-value=0.00026 Score=65.10 Aligned_cols=88 Identities=25% Similarity=0.299 Sum_probs=56.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCC-CcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~-~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||||.|+|+||+.+++.+... +++++++|-+.. ..+... +.+ +..+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~---------------------~~~---~~~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVR---------------------RAL---GEAVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHh---------------------hhh---ccCCeee--C
Confidence 6999999999999999988754 346766664320 000000 000 0012232 2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVI 205 (269)
+.+++ +..+|+|+|||+.....+.+...|++|..-++
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi 90 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCAV 90 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEE
Confidence 44444 23689999999998888999999999975443
No 47
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.37 E-value=0.00036 Score=64.26 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=57.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||+|+| +|++|+.+++.+.+. ++++++++-|..+.+.. .+| -+.+.+. .. .| +.+. .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~--~~~~~~~----~~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTD--AGELAGI----GK-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCC--HHHhcCc----Cc-----CC--ceee--C
Confidence 6999999 899999999998765 46899998773222211 111 0110000 00 01 2222 2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkV 204 (269)
+++.+ ...+|+|||+|......+.+...+++|..-|
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~vV 96 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVRLV 96 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCCEE
Confidence 34444 1357888888888777778888888886443
No 48
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.22 E-value=0.00091 Score=63.68 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.0
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC-------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~-------~~~l~iVaInd~ 121 (269)
|.+||+|.|||.||+.+++.+.++. +.++++++|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4689999999999999999987642 225899999774
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.07 E-value=0.0015 Score=62.39 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=59.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
++||+|+|+|+||+.+++.+..+ +++++++|-+..+.+.+.. .+.++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~----------------------------~~~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT----------------------------ETPVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh----------------------------cCCccccC
Confidence 48999999999999999988765 4699999877622221110 00111111
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
+.+. +. ..+|+|+-||+.....+.+...|++|.. ||-|.
T Consensus 53 d~~e--~l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~ 91 (324)
T TIGR01921 53 DDEK--HL-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSF 91 (324)
T ss_pred CHHH--hc-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECC
Confidence 2111 11 3689999999999999999999999874 44443
No 50
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.03 E-value=0.0016 Score=59.78 Aligned_cols=92 Identities=22% Similarity=0.260 Sum_probs=58.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+||+|+|+|+||+.+++.+.... ..+++++|-|. +.+....+.+ . .+ ..+. .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~------~--------------~~---~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS------K--------------TG---AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH------h--------------cC---CeeE--CC
Confidence 58999999999999999887542 25788888776 3332221111 0 00 0111 23
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
.+++. .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 44443 2689999999988777888888888864 444333
No 51
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.96 E-value=0.0016 Score=59.77 Aligned_cols=92 Identities=26% Similarity=0.347 Sum_probs=57.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
++|+|+|+|+||..+++.+.+-. .+++++++-|. +.++.-.+.+ | +.++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~------------------~~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--S------------------VGRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--h------------------cCCCcc-----cc
Confidence 47999999999999999876422 45788888775 3332222221 1 111110 01
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
.+++ ...+|+++||.+..--++...+.|++|..-+|+|-
T Consensus 54 ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 54 IDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSV 92 (255)
T ss_pred HHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEec
Confidence 1111 12678888888877777788888888877766654
No 52
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.93 E-value=0.00025 Score=58.01 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||+|+|+ ||+||.+++.+.++ ++++++++-+...-++ .|+--+.+. + .....+.+. .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~----------~g~d~g~~~---~----~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAK----------VGKDVGELA---G----IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTT----------TTSBCHHHC---T----SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCccc----------ccchhhhhh---C----cCCcccccc--h
Confidence 58999997 99999999999986 3589988876522010 011111100 0 000111221 2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkV 204 (269)
+.+.+. ..+|++||.|-.....+.++..++.|..-|
T Consensus 60 ~l~~~~---~~~DVvIDfT~p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 60 DLEELL---EEADVVIDFTNPDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp -HHHHT---TH-SEEEEES-HHHHHHHHHHHHHHT-EEE
T ss_pred hHHHhc---ccCCEEEEcCChHHhHHHHHHHHhCCCCEE
Confidence 333321 137999999866555566666677777433
No 53
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.92 E-value=0.0022 Score=59.29 Aligned_cols=89 Identities=24% Similarity=0.190 Sum_probs=57.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
+++||||+|+|+||+.+++.|... ..++++++|-+. +++...-+.+ -+| . ... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g-----------------~--~~~--~ 58 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLR-----------------R--PPP--V 58 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcC-----------------C--Ccc--c
Confidence 358999999999999999988753 135788888776 3332211110 000 0 000 0
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
.+++++-+ .+|+|++|++...-.+.....+++|..
T Consensus 59 ~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~ 93 (271)
T PRK13302 59 VPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK 93 (271)
T ss_pred CCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence 23444432 579999999988888888888888863
No 54
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.87 E-value=0.0023 Score=58.57 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=28.2
Q ss_pred eeeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
++||+|+|. |++|+.+++.+.+. ++++++++-|.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~ 35 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR 35 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 369999996 99999999988764 35899998775
No 55
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.84 E-value=0.0019 Score=61.61 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=29.8
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC-------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~-------~~~l~iVaInd~ 121 (269)
|+++|+|.|||.||+.++|+|.++. +-++++++|.|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4589999999999999999887642 235789999874
No 56
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.82 E-value=0.0035 Score=59.76 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhC-----CCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r-----~~~~l~iVaInd~ 121 (269)
+||+|.|||.||+.+++.|.++ .+.++++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998774 2345789999774
No 57
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.77 E-value=0.0024 Score=61.50 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=28.9
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC-------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~-------~~~l~iVaInd~ 121 (269)
|+++|+|.|||.||+.++++|.++. +-+++|++|-+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 3589999999999999999987643 235778877653
No 58
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0033 Score=60.36 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=29.2
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCC-------CCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~-------~~l~iVaInd~ 121 (269)
+.+||+|.|||.||+.++|+|.+++. ..+++++|-+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 56899999999999999999987642 34666666554
No 59
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.55 E-value=0.0047 Score=60.59 Aligned_cols=93 Identities=27% Similarity=0.402 Sum_probs=55.3
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCC-------CCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKL 158 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~-------~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~ 158 (269)
++||||.|+|.||+.++++|.++. +.++++++|-+. +.+... -+. ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~~-~~~---------------------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKDR-GVD---------------------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhcc-CCC---------------------Ccc--
Confidence 589999999999999999886542 235788877654 111100 000 000
Q ss_pred EEEEecCCCCCCCCCCCCccEEEEcCCCC-CChhhHHHHHHcCCCEEEEec
Q 024349 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 159 I~V~~~~~P~~i~w~~~gvDiVve~TG~f-~~~e~a~~Hl~aGakkVIISA 208 (269)
..+. .+++++- .+..+|+|+||||.. ...+.....|++|. -|+|+
T Consensus 58 ~~~~--~d~~~ll-~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 ILLT--TDPEELV-NDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred ccee--CCHHHHh-hCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0111 1232221 234789999999864 33566667888885 45664
No 60
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.04 E-value=0.012 Score=46.28 Aligned_cols=94 Identities=32% Similarity=0.408 Sum_probs=64.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccc-cccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~Ll-kyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
+||||+|+|.+|+..++.+.... +++++++|-|+ +.+....+. +|.. . ++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~~~~~-------~-----------------~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAEKYGI-------P-----------------VY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHHHTTS-------E-----------------EE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHHHhcc-------c-----------------ch--h
Confidence 58999999999999998888752 56899999887 333222111 1110 0 11 1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (269)
+.+++- .+.++|+|+-+|....-.+.+...+++|. -|++--|-
T Consensus 53 ~~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 53 DLEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp SHHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 122221 12378999999999988899999999998 67776663
No 61
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.01 E-value=0.017 Score=51.93 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=82.1
Q ss_pred ccccccCccccc---ccc----cccccCCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhC
Q 024349 36 DVAEFAGLRANA---GAT----YATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 36 ~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r 108 (269)
+++++-|+.+.. -+. |+.++-+-+++ +|..++.+.++.. .+.+|.|+|.|.+||.++..-+..
T Consensus 37 els~~~~vdsatIRrDfSYFG~lGkrG~GYnV~-~L~~ff~~~Lg~~---------~~tnviiVG~GnlG~All~Y~f~~ 106 (211)
T COG2344 37 ELSEALGVDSATIRRDFSYFGELGKRGYGYNVK-YLRDFFDDLLGQD---------KTTNVIIVGVGNLGRALLNYNFSK 106 (211)
T ss_pred HHHHHhCCCHHHHhhhhHHHHhcCCCCCCccHH-HHHHHHHHHhCCC---------cceeEEEEccChHHHHHhcCcchh
Confidence 556666664433 122 24444454443 4444455544432 447999999999999888654432
Q ss_pred CCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCCCCCCCCCCCccEEEEcCCCCC
Q 024349 109 KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 188 (269)
Q Consensus 109 ~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~~~gvDiVve~TG~f~ 188 (269)
..+++++++=|. +++ .-|++-+. +.|..-.+.+.+- .+.++|++|-|.....
T Consensus 107 -~~~~~iv~~FDv-~~~----------~VG~~~~~---------------v~V~~~d~le~~v-~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 107 -KNGMKIVAAFDV-DPD----------KVGTKIGD---------------VPVYDLDDLEKFV-KKNDVEIAILTVPAEH 158 (211)
T ss_pred -hcCceEEEEecC-CHH----------HhCcccCC---------------eeeechHHHHHHH-HhcCccEEEEEccHHH
Confidence 246888887665 222 12332222 3333222232221 2248999999999988
Q ss_pred ChhhHHHHHHcCCCEEEEecCC
Q 024349 189 DGPGAGKHIQAGAKKVIITAPA 210 (269)
Q Consensus 189 ~~e~a~~Hl~aGakkVIISAP~ 210 (269)
..+-+..-.++|+|.++=-+|.
T Consensus 159 AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 159 AQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHHHHHHHHcCCceEEeccce
Confidence 8888889999999886545664
No 62
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.034 Score=52.00 Aligned_cols=96 Identities=25% Similarity=0.291 Sum_probs=55.8
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++||+|+| .||.||.+.|++.+.+ ++++++.-+..+. ...|...+.+- -++-..+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~----------~~~g~d~ge~~-------g~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGS----------LSLGSDAGELA-------GLGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCc----------cccccchhhhc-------cccccCceee--
Confidence 57999999 6999999999998753 5777666543111 01111111110 0111122232
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEE
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVI 205 (269)
+++. -.....|++||=|-...+.+.+...++.|.+-||
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVI 98 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKPLVI 98 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCCeEE
Confidence 2222 1234678999888887788888877888854433
No 63
>PRK11579 putative oxidoreductase; Provisional
Probab=95.93 E-value=0.029 Score=52.81 Aligned_cols=92 Identities=23% Similarity=0.389 Sum_probs=59.0
Q ss_pred eeeEEEEcCChHHHH-HHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 86 ~ikVaInGfGrIGR~-llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
++||||+|+|.||+. .++.+... +++++++|.|. +.+..+- +| . + ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~~--~~-------~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVKA--DW-------P--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHHh--hC-------C--------------C--Ccee--
Confidence 489999999999985 56665543 35899999886 3332210 01 0 0 0111
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
.+.+++- .+.++|+|+-||....-.+.+...+++|. -|++--|
T Consensus 54 ~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 54 SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 1222221 12368999999999988899999999984 5666445
No 64
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.74 E-value=0.0027 Score=50.70 Aligned_cols=87 Identities=26% Similarity=0.342 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHhCCCC-CceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCCCC-C
Q 024349 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (269)
Q Consensus 93 GfGrIGR~llR~l~~r~~~-~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~-i 170 (269)
|||.||+.+++.|.++... ++++++|-+.. . ++..+. ... ..+.. +. .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~----~~~~~~-~~~--------~~~~~--------~~--~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--M----LISKDW-AAS--------FPDEA--------FT--TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--E----EEETTH-HHH--------HTHSC--------EE--SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--c----hhhhhh-hhh--------ccccc--------cc--CCHHHHh
Confidence 8999999999999876421 57888887651 0 111110 000 00000 00 11111 2
Q ss_pred CCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 171 ~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
.| ..+|+|||||+...-.+.....|+.|. -|||+
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 22 168999999998777778888888888 45554
No 65
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.17 E-value=0.19 Score=45.52 Aligned_cols=53 Identities=32% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 57 DASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+..+..+++.-+... + . +-+..+|+|.|||.||+.+++.|.+. ..++|+|.|.
T Consensus 11 g~Gv~~~~~~~~~~~-~---~-----~l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~ 63 (227)
T cd01076 11 GRGVAYATREALKKL-G---I-----GLAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred hHHHHHHHHHHHHhc-C---C-----CccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 444666666555443 1 1 11447999999999999999999875 4799999886
No 66
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.75 E-value=0.27 Score=44.30 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.5
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+..+|+|-|||.+|+.+++.|.++ ...+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 346999999999999999999876 3689999986
No 67
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.65 E-value=0.12 Score=51.52 Aligned_cols=102 Identities=20% Similarity=0.288 Sum_probs=60.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-------CCcccccccccccccc-cccCceEEEecCCeEEECC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVDG 156 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-------~~~~~~a~LlkyDS~h-G~f~g~v~~~~~~~L~inG 156 (269)
+..+|+|-|||.+|+.+++.|.+. ..+||+|.|. .+++ ...|++|--.+ |...+- .+. .+.
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~---GakVVavsDs~G~iyn~~GLD-~~~L~~~k~~~~~~l~~~----~~~---~~~ 299 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL---GAKVVTCSDSSGYVYDEEGID-LEKLKEIKEVRRGRISEY----AEE---FGA 299 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCC-HHHHHHHHHhcCCchhhh----hhh---cCC
Confidence 346899999999999999999875 3799999883 1222 12244332111 111100 000 011
Q ss_pred EEEEEEecCCCCCCCCCCCCccEEEEcC-CCCCChhhHHHHHHcCCCEEEE
Q 024349 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 157 k~I~V~~~~~P~~i~w~~~gvDiVve~T-G~f~~~e~a~~Hl~aGakkVII 206 (269)
+ .+ ++++ .|. ..+||.|.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 300 ~---~i---~~~~-i~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 E---YL---EGGS-PWS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred e---ec---CCcc-ccc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 1 11 2333 253 5789999987 667778888888777774 444
No 68
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.64 E-value=0.096 Score=51.35 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=63.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccc-cccccccccCceEEEecCC---eEE--ECCEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNE---TIS--VDGKLI 159 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~Ll-kyDS~hG~f~g~v~~~~~~---~L~--inGk~I 159 (269)
.+|+|.| +|-||+.-++++...+ .+++++++.-..+.+.+..+. +|..- -+-+.++. .|. ..+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~------~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPK------YVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhhccCCc
Confidence 4899999 9999999999886543 368999996322444444333 12221 11110100 000 112123
Q ss_pred EEEecCC-CCC-CCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 160 KVVSNRD-PLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 160 ~V~~~~~-P~~-i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
++....+ ..+ +.+ ..+|+|+.+++.+...+..-..+++|. +|.+
T Consensus 75 ~v~~G~~~~~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCELAAL--PEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred eEEEChhHHHHHhcC--CCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 3443322 111 111 268999999999988888888889984 4444
No 69
>PLN02700 homoserine dehydrogenase family protein
Probab=94.46 E-value=0.11 Score=50.68 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=29.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~------~~~l~iVaInd~ 121 (269)
+.++|+|.|||-||+.+++.+..+. +-+++|++|.+.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 3589999999999999999876542 234788888774
No 70
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.46 E-value=0.059 Score=46.39 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=26.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|+|+|||+||+.+++.+... .++|++.+..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC---CceeEEeccc
Confidence 35899999999999999998764 3788888765
No 71
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=94.45 E-value=0.12 Score=45.69 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=57.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|+|+|.|.+|+.+++.+... ..+++++++-|. +++... .. ++|.++ ....+
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~~---------------------~~--i~g~~v--~~~~~ 137 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKIG---------------------TK--IGGIPV--YHIDE 137 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-ChhhcC---------------------CE--eCCeEE--cCHHH
Confidence 6899999999999999864322 245888887654 222110 00 123222 11122
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
..++ ..+.++|+|+.|++.....+-...-+++|.+.|+.-.|
T Consensus 138 l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 138 LEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 2222 13357999999999876666566677789876655444
No 72
>PLN02775 Probable dihydrodipicolinate reductase
Probab=94.19 E-value=0.17 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=28.4
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+.+||+||| .||.|+.+++.+.. . +|++|+.-+.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~ 44 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFT 44 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEecc
Confidence 457999999 99999999999876 3 5898887664
No 73
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.16 E-value=0.091 Score=51.37 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=52.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecC----CeEEECCEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDN----ETISVDGKLI 159 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~----~~L~inGk~I 159 (269)
.++|||++|-|..|+-++-....- +.+++|+|.|. .+-.+.| ||-.++.-...+..++- +.|. .| +|
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-Ki 87 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIE-AG-KI 87 (438)
T ss_pred CceEEEEecccccchHHHHHHhhc--CCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHh-cC-cE
Confidence 679999999999999877655533 45999999997 2222222 56555442222221100 1111 12 23
Q ss_pred EEEecCCCCCCCCCCCCccEEEEcCCCC
Q 024349 160 KVVSNRDPLQLPWAELGIDIVIEGTGVF 187 (269)
Q Consensus 160 ~V~~~~~P~~i~w~~~gvDiVve~TG~f 187 (269)
.+. +|.+.+ .....||++||+||.-
T Consensus 88 ~vT--~D~~~i-~~~~~IdvIIdATG~p 112 (438)
T COG4091 88 AVT--DDAELI-IANDLIDVIIDATGVP 112 (438)
T ss_pred EEe--cchhhh-hcCCcceEEEEcCCCc
Confidence 332 222222 2334899999999974
No 74
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=93.95 E-value=0.05 Score=57.84 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC-------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~-------~~~l~iVaInd~ 121 (269)
+.++|+|.|||.||+.++|+|.++. +-++++++|-+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 4689999999999999999987653 235778888653
No 75
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.78 E-value=0.16 Score=46.56 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=51.6
Q ss_pred CccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCcccc-CCCCCceEEcCChhHHhHHHHHHHHhh
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY-DHEVANIVSNASCTTNCLAPFVKVMDE 254 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~-~~~~~~IISnaSCTTn~LaPvlkvL~d 254 (269)
++|+|||+|......+.+.+..++|.+-+-+|-..- -|-+|+-+|-+.- +...-+.| .|-..+-.|++....+
T Consensus 71 di~lvfdatsa~~h~~~a~~~ae~gi~~idltpaai---gp~vvp~~n~~eh~~a~nvnmv---tcggqatipiv~avsr 144 (310)
T COG4569 71 DIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPAAI---GPYVVPVVNLEEHVDALNVNMV---TCGGQATIPIVAAVSR 144 (310)
T ss_pred CcceEEeccccchhhcchHhHHhcCCceeecchhcc---CCeeccccchHHhcCCCCcceE---eecCcccchhhhhhhh
Confidence 688999999999999999999999996655543232 2899999997743 32113444 4666666676665544
No 76
>PRK10206 putative oxidoreductase; Provisional
Probab=93.53 E-value=0.17 Score=48.05 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=57.7
Q ss_pred eeeEEEEcCChHHH-HHHHHHHhCCCCCceEEEEcCCCCcccccccc-cccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 86 ~ikVaInGfGrIGR-~llR~l~~r~~~~l~iVaInd~~~~~~~a~Ll-kyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
++||||+|+|+|++ ..++.+... .+.+++++|-|. +.+.. ... +|. + +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~-~~~~~-~~~~~~~---------------------~--~~~~- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRR-HAKPE-EQAPIYS---------------------H--IHFT- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcC-ChhHH-HHHHhcC---------------------C--Cccc-
Confidence 37999999999885 345655433 235899999887 22221 111 111 0 0111
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
.+.+++ ..+.++|+|+-||....-.+.+.+.+++| |-|++--|
T Consensus 54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 112221 11237899999999998889999999998 45666444
No 77
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.38 E-value=0.073 Score=56.61 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.0
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC------CCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~------~~~l~iVaInd~ 121 (269)
+.++|+|.|||.||+.+++.|.++. +-++++++|.+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 4689999999999999999987542 235678877653
No 78
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.37 E-value=0.25 Score=45.84 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=28.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|+|-|||.+|+.+++.|.+. ..++|+|.|.
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~ 70 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDS 70 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 46899999999999999999875 3799999884
No 79
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=92.86 E-value=0.64 Score=46.60 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=63.6
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccc-cccccccccCceEEEecC-------CeEEECC
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDN-------ETISVDG 156 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~Ll-kyDS~hG~f~g~v~~~~~-------~~L~inG 156 (269)
+.||+|.| +|-||...++++.... .+++++++.-....+.++... +|..- -+.+.+. ..| +|
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~------~v~v~d~~~~~~l~~~l--~~ 127 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPK------LVAVRNESLVDELKEAL--AD 127 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhh--cC
Confidence 36899999 7999999999987654 468998887655555554432 22211 1111000 001 11
Q ss_pred E--EEEEEecC-CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 157 K--LIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 157 k--~I~V~~~~-~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
. .++++... +..++ -....+|+||.+.+.+....-.-..+++| |+|.+
T Consensus 128 ~~~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VAL 178 (454)
T PLN02696 128 LDDKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 178 (454)
T ss_pred CCCCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEE
Confidence 1 13343311 11111 01126899999998887777667788888 45444
No 80
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.77 E-value=0.19 Score=45.27 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=55.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccccc--ccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~Llk--yDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
+++.|+|.||+|+.++|.|.++. -+++.|.+- .+.....++ +|. ..+..++....+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d--~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~- 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRD--EERVEEFLADELDT--------------HVVIGDATDEDVLE- 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcC--HHHHHHHhhhhcce--------------EEEEecCCCHHHHH-
Confidence 47999999999999999998763 367777542 222211111 111 11222222222221
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhh-HHHHHH-cCCCEEEEecCC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPG-AGKHIQ-AGAKKVIITAPA 210 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~-a~~Hl~-aGakkVIISAP~ 210 (269)
+.. -..+|+++-+||.....-- +..+++ .|++++|..+..
T Consensus 61 ----~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 61 ----EAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred ----hcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 111 1256799999998544432 334444 599998877654
No 81
>PLN02477 glutamate dehydrogenase
Probab=92.76 E-value=0.81 Score=45.24 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|+|-|||.+|+.+++.|.++ ..+||+|.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECC
Confidence 36899999999999999999875 3799999886
No 82
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.66 E-value=0.15 Score=47.99 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=26.3
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|||+|||.+++.+... +++|++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 46899999999999999988643 478888764
No 83
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.12 E-value=0.2 Score=47.42 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|||+|||+|||.++|.+... +++|++.+..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~~ 180 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF---GMRVLIGQLP 180 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 35899999999999999988643 4788887643
No 84
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.69 E-value=0.5 Score=43.59 Aligned_cols=107 Identities=20% Similarity=0.150 Sum_probs=58.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC------C--CCceEEEEcCC-CCccccc-ccccccccccccCceEEEecCCeEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLDVVVVNDS-GGVKNAS-HLLKYDSLLGTFKADVKIVDNETISV 154 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~------~--~~l~iVaInd~-~~~~~~a-~LlkyDS~hG~f~g~v~~~~~~~L~i 154 (269)
.+.||.|+|.|-+|-.+++.|.... + ..++++.|..- .+...+- .+| +++.-|+....+-. ..--.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf-~~~dVG~~Ka~v~~--~ri~~~ 86 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAF-YPADVGQNKAIVLV--NRLNQA 86 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccC-ChhHCCcHHHHHHH--HHHHhc
Confidence 4578999999999999999886421 1 12355545321 2222221 233 33445665544432 111113
Q ss_pred CCEEEEEEecC-CCCCCCCCCCCccEEEEcCCCCCChhhHHHHH
Q 024349 155 DGKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (269)
Q Consensus 155 nGk~I~V~~~~-~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl 197 (269)
++-.++.+..+ +++++ + .+.|+||+|+..+..+..+-..+
T Consensus 87 ~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 87 MGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred cCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 34444444322 22222 2 36899999999998886665444
No 85
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.51 E-value=0.24 Score=37.57 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~L 130 (269)
||+|.|+|.+|..+++-|.+....+-++..+.+. +++...++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHH
Confidence 7999999999999999998764233566655343 45555444
No 86
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.45 E-value=0.26 Score=46.64 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|||+|||.+++.+... .++|++.+.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~~ 178 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAEH 178 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 36899999999999999988543 478877753
No 87
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=91.32 E-value=0.6 Score=42.96 Aligned_cols=97 Identities=26% Similarity=0.270 Sum_probs=58.8
Q ss_pred ceeeEEEEcCChHHH-HHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 85 ~~ikVaInGfGrIGR-~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+++||||+|.|.|+. ..++.+..... .+++++|-|. +.+.+..+. ..+|- . +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~-~~~~vav~d~-~~~~a~~~a---~~~~~---~----------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGG-GLELVAVVDR-DPERAEAFA---EEFGI---A----------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCC-ceEEEEEecC-CHHHHHHHH---HHcCC---C----------------ccc-
Confidence 568999999997775 47777765421 1799999776 443332221 11110 0 011
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
.+.+++- .+..+|+|+-||....-.+.+.+.|++|. -|++--|
T Consensus 57 -~~~~~ll-~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 -TDLEELL-ADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred -CCHHHHh-cCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 1111110 11248999999999999999999999987 4555444
No 88
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.18 E-value=0.98 Score=45.20 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC---------CCccc
Q 024349 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (269)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~---------~~~~~ 126 (269)
++..+.-+++..+... +. .. +..+|+|-|||.+|..+++.|.+. ..++|+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~l-----~g~~vaIQGfGnVG~~aA~~L~e~---GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETK-GI---DI-----KGKTVAISGFGNVAWGAATKATEL---GAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHc-CC---Cc-----CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH
Confidence 4555666666555432 21 11 346899999999999999999875 3699998764 23444
Q ss_pred ccccccccccccccCceEEEecCCeEEECCEEEEEEecCCCCCCCCCCCCccEEEEc-CCCCCChhhHHHHHHcCCCE
Q 024349 127 ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKK 203 (269)
Q Consensus 127 ~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~~~gvDiVve~-TG~f~~~e~a~~Hl~aGakk 203 (269)
+.+|++|-..+|..-.... + .+.|- +.+ ++++ .|. ..+||.+=| ++.-++.+.+.+-.+.+||-
T Consensus 275 l~~l~~~k~~~~~~~~~~~--~----~~~ga--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 275 IDYMLELRASGNDIVAPYA--E----KFPGS--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred HHHHHHHHHhcCccHHHHH--h----cCCCC--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 5556654332221100000 0 01121 111 2222 253 577876655 57777888777766667743
No 89
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=90.87 E-value=0.49 Score=44.48 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=24.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+||.||| .|++||.+.+++.. .+|++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEee
Confidence 4799999 99999999999765 35898875
No 90
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=90.86 E-value=1.1 Score=44.89 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=70.6
Q ss_pred cCCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCC---------Ccc
Q 024349 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVK 125 (269)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~---------~~~ 125 (269)
.++-.+.-|+..-+... +. .. +..+|+|-|||.+|..+++.|.+.. .++|+|.|.. |++
T Consensus 215 ATG~Gv~~~~~~~l~~~-~~---~l-----~Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~ 282 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL-ND---SL-----EGKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKE 282 (454)
T ss_pred ccHHHHHHHHHHHHHHc-CC---Cc-----CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHH
Confidence 34555666666655443 11 11 3368999999999999999998753 6999999862 233
Q ss_pred cccccccccccc-cccCceEEEecCCeEEECCEEEEEEecCCCCCCCCCCCCccEEEEc-CCCCCChhhHHHHHHcCCCE
Q 024349 126 NASHLLKYDSLL-GTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKK 203 (269)
Q Consensus 126 ~~a~LlkyDS~h-G~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~~~gvDiVve~-TG~f~~~e~a~~Hl~aGakk 203 (269)
.+..|+++-..+ |+ ++-..+. .-| .+.+ ++++ .|. ..+||.+=| ++.-++.+.+..-++.|||-
T Consensus 283 ~l~~l~~~k~~~~g~----i~~~~~~---~~~--a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 283 KLAYLMDLKNVKRGR----LKEYAKH---SST--AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred HHHHHHHHHhhcCCc----HHhhhhc---cCC--cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 443344322111 11 1100000 001 1111 1222 465 578977765 57788888888777888854
No 91
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.75 E-value=0.33 Score=46.33 Aligned_cols=103 Identities=18% Similarity=0.282 Sum_probs=55.5
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcc--cccccccccccccccCceEEEecCCeEEE----CCEEE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK--NASHLLKYDSLLGTFKADVKIVDNETISV----DGKLI 159 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~--~~a~LlkyDS~hG~f~g~v~~~~~~~L~i----nGk~I 159 (269)
..+|||.|||+||+.+++.+... ++++++.+--...+ ..-.....|+...-+. +-+-|++ .-+..
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af---gm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~------~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDPYSPRERAGVDGVVGVDSLDELLA------EADILTLHLPLTPETR 212 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEECCCCchhhhccccceecccHHHHHh------hCCEEEEcCCCCcchh
Confidence 45899999999999999888654 47888776511111 0000111111110000 1122211 12233
Q ss_pred EEEecCCCCCCCCCCCCccEEEEcC-CCCCChhhHHHHHHcCC
Q 024349 160 KVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 160 ~V~~~~~P~~i~w~~~gvDiVve~T-G~f~~~e~a~~Hl~aGa 201 (269)
.++.++..+.++ .|+ +.|.|. |.-++.+.+-..|+.|-
T Consensus 213 g~i~~~~~a~MK---~ga-ilIN~aRG~vVde~aL~~AL~~G~ 251 (324)
T COG0111 213 GLINAEELAKMK---PGA-ILINAARGGVVDEDALLAALDSGK 251 (324)
T ss_pred cccCHHHHhhCC---CCe-EEEECCCcceecHHHHHHHHHcCC
Confidence 344333333343 255 667665 78888899999999874
No 92
>PLN02928 oxidoreductase family protein
Probab=90.49 E-value=0.36 Score=46.31 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.5
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|||+||+.+++.|... .++|++.+.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr 190 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF---GVKLLATRR 190 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECC
Confidence 35899999999999999998753 378888864
No 93
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.25 E-value=0.69 Score=42.69 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||.|.| +|.||+.+++.|.++. .+|+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLV 31 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEE
Confidence 3799999 9999999999998763 5666664
No 94
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.19 E-value=0.39 Score=45.63 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=24.4
Q ss_pred eeeEEEEcCChHHHHHHHHHH-hCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~-~r~~~~l~iVaIn 119 (269)
..+|||+|||+|||.++|.+. .. .++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 468999999999999999875 32 36776554
No 95
>PRK07574 formate dehydrogenase; Provisional
Probab=90.11 E-value=0.4 Score=46.93 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=25.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|||+||+.++|.|... .+++.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5799999999999999988753 368777764
No 96
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.11 E-value=0.4 Score=47.00 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|||+||+.+++.+... ++++++.+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f---Gm~V~~~d~ 182 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL---GMRVYFYDI 182 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECC
Confidence 35899999999999999988754 378777753
No 97
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.08 E-value=0.41 Score=45.56 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|+|+|+|+||+.+++.|... .++|++.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF---GMRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999998754 368877754
No 98
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.01 E-value=0.43 Score=45.08 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||.|+|+||+.+++.+... .+++++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999977543 478888875
No 99
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.07 E-value=0.53 Score=45.02 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=53.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccc-ccccccccccCceEEEecCCeEEEC----CEEEE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL-LKYDSLLGTFKADVKIVDNETISVD----GKLIK 160 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~L-lkyDS~hG~f~g~v~~~~~~~L~in----Gk~I~ 160 (269)
..+|||.|+||||+.++|.+... .++|+.-+....++....+ .+|=+ ++.-.+ +-+.|+++ .+.-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F---gm~v~y~~~~~~~~~~~~~~~~y~~----l~ell~--~sDii~l~~Plt~~T~h 216 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF---GMKVLYYDRSPNPEAEKELGARYVD----LDELLA--ESDIISLHCPLTPETRH 216 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEECCCCChHHHhhcCceecc----HHHHHH--hCCEEEEeCCCChHHhh
Confidence 36899999999999999998642 4676666533211111111 11100 111111 22344433 12333
Q ss_pred EEecCCCCCCCCCCCCccEEEEcC--CCCCChhhHHHHHHcCC
Q 024349 161 VVSNRDPLQLPWAELGIDIVIEGT--GVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 161 V~~~~~P~~i~w~~~gvDiVve~T--G~f~~~e~a~~Hl~aGa 201 (269)
++.++..+.++. ..++=+| |.-++.+.+-.+|+.|-
T Consensus 217 Lin~~~l~~mk~-----ga~lVNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 217 LINAEELAKMKP-----GAILVNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred hcCHHHHHhCCC-----CeEEEECCCccccCHHHHHHHHHhCC
Confidence 443333333322 2333344 66778888888998765
No 100
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.73 E-value=0.61 Score=44.13 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|||+|||.||+.+++.|... .+++.+++.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 5899999999999999988753 378777764
No 101
>PLN02306 hydroxypyruvate reductase
Probab=88.68 E-value=0.59 Score=45.68 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=24.7
Q ss_pred eeeEEEEcCChHHHHHHHHHH-hCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~-~r~~~~l~iVaIn 119 (269)
..+|||+|||+||+.++|.+. .. +++|++.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 368999999999999999874 32 47877775
No 102
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.49 E-value=0.76 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|.|||++|+|+.|+.+++.|... .+++.+.|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA---GYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT---TTEEEEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhc---CCeEEeec
Confidence 36899999999999999999865 36766665
No 103
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.41 E-value=2.6 Score=38.77 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=38.8
Q ss_pred CCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCc-cccCCCCCceEEcCChhHHhHHHHHHHHh
Q 024349 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVSNASCTTNCLAPFVKVMD 253 (269)
Q Consensus 175 ~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~-~~~~~~~~~IISnaSCTTn~LaPvlkvL~ 253 (269)
.++|+||||+|.-...+.+-..++.|.+-+++..+. + .. .+|. ..+... ..++....++..-+..+++.+.
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~-~~-----~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~l~~ 270 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E-PV-----NFDFVPAFMKE-ARLRIAAEWQPGDLHAVRELIE 270 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C-Cc-----ccccchhhhcc-eEEEEecccchhHHHHHHHHHH
Confidence 478999999997544455556666665333333332 1 11 1221 122222 4566555555555666777765
Q ss_pred h
Q 024349 254 E 254 (269)
Q Consensus 254 d 254 (269)
+
T Consensus 271 ~ 271 (308)
T TIGR01202 271 S 271 (308)
T ss_pred c
Confidence 4
No 104
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.31 E-value=0.87 Score=43.34 Aligned_cols=101 Identities=21% Similarity=0.161 Sum_probs=51.1
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECC-EEEEEEecCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVSNRD 166 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inG-k~I~V~~~~~ 166 (269)
+|+|.|.|.||-+.+.++--. .--+|+++ |. +.+.++..-++. +....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~-~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR-SPERLELAKEAG--------------GADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC-CHHHHHHHHHhC--------------CCeEeecCccccHH---HH
Confidence 799999999998765544322 22366666 44 334343221211 11111111 11000 00
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (269)
...+..+ .|+|+||||+|.....+.+-..++.|-.-+++.-+.
T Consensus 230 ~~~~t~g-~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 230 ILELTGG-RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHhCC-CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 0011111 489999999996554556666666555444555554
No 105
>PLN00016 RNA-binding protein; Provisional
Probab=88.12 E-value=2.3 Score=40.35 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=26.3
Q ss_pred ceeeEEEE----c-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaIn----G-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++.||.|. | +|.||+.+++.|.++. .+|+++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 55789999 8 9999999999998753 56666654
No 106
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.04 E-value=2.3 Score=39.62 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.8
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|++||+|+|.|.+|..++..|.+. + .+|..+.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~-G--~~V~~~~ 32 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAA-G--ADVTLIG 32 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhc-C--CcEEEEe
Confidence 456899999999999999998765 2 3555554
No 107
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.77 E-value=0.74 Score=45.02 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
...++.+|+-..+-..... .+. .-...+|||+|+|.||+.+++.+... .+++++.+
T Consensus 91 na~aVAE~~~~~lL~l~r~-~g~----~L~gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAER-DGF----SLHDRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CchHHHHHHHHHHHHHhcc-CCC----CcCCCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 3456777776655433111 111 11235899999999999999998753 37887765
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=87.76 E-value=0.67 Score=45.40 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=25.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|+|+||+.+++.|... ++++++.+.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d~ 230 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHDR 230 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEEECC
Confidence 35899999999999999998753 367776653
No 109
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=87.74 E-value=2.4 Score=38.33 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=25.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+||||.| .|++|..++.-+..|. -++++|-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5899999 9999999999888774 47777643
No 110
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.66 E-value=0.78 Score=43.72 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|+|+||+.+++.|... .++|++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~ 177 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF---GATITAYDA 177 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEeC
Confidence 5899999999999999998753 367777653
No 111
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=87.60 E-value=0.47 Score=41.45 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=51.0
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCC
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P 167 (269)
|.|.| +|.+|+.+++.|... ..+|.++-... .+..+.-|+. . +-.+ +.. ...++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~-~~~~~~~l~~---~-----------g~~v------v~~-d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDP-SSDRAQQLQA---L-----------GAEV------VEA-DYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSS-HHHHHHHHHH---T-----------TTEE------EES--TT-H
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEecc-chhhhhhhhc---c-----------cceE------eec-ccCCH
Confidence 68999 999999999999984 35666654321 1111111110 0 0000 000 01233
Q ss_pred CCCCCCCCCccEEEEcCCCCCChh------hHHHHHHcCCCEEEEecC
Q 024349 168 LQLPWAELGIDIVIEGTGVFVDGP------GAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 168 ~~i~w~~~gvDiVve~TG~f~~~e------~a~~Hl~aGakkVIISAP 209 (269)
+.+.=.=.|+|.||.+++.+...+ -+....++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 332211138999999999774322 223445679999887543
No 112
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.50 E-value=4.8 Score=37.50 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=69.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|.|.|.||...+.++... ..+++++... .+.+.+. +++ .+|. +. + +-+.-.+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~-~~~---~~Ga---~~-v--------~~~~~~~~--- 231 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPKAD-IVE---ELGA---TY-V--------NSSKTPVA--- 231 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHH-HHH---HcCC---EE-e--------cCCccchh---
Confidence 4799999999999988876654 2467766531 1223332 221 0111 10 1 10000000
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
+ .. .+ .++|+||||+|.-...+.+-..++.|-+-+++..+..+...++-...++...+..+ ..|+.+-.++..-+
T Consensus 232 ~-~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~-~~i~g~~~~~~~~~ 306 (355)
T cd08230 232 E-VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHF 306 (355)
T ss_pred h-hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcC-cEEEEecCCchhhH
Confidence 0 00 11 37899999999654445556677765533334333321111110011122233333 46776656665556
Q ss_pred HHHHHHHhh
Q 024349 246 APFVKVMDE 254 (269)
Q Consensus 246 aPvlkvL~d 254 (269)
..+++.|.+
T Consensus 307 ~~~~~~l~~ 315 (355)
T cd08230 307 EQAVEDLAQ 315 (355)
T ss_pred HHHHHHHHh
Confidence 666676654
No 113
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.13 E-value=2.8 Score=39.58 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.8
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
..||+|.|-|.+|..++..+..+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~ 27 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQK 27 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC
Confidence 35899999999999999877754
No 114
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.66 E-value=1 Score=40.56 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.9
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r 108 (269)
|++||+|+|+|.||..+++.|...
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 356899999999999999988754
No 115
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=86.38 E-value=0.9 Score=35.26 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=54.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEE-ec
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV-SN 164 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~-~~ 164 (269)
+.+|+|+|.|+.|+.++...+.. ..+.++++-|. +++ +.. -.++| ++|+ ..
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv-~~~-------------~~G----------~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV-DPE-------------KIG----------KEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE-CTT-------------TTT----------SEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc-CCC-------------ccC----------cEECC--EEeeccH
Confidence 36899999999999887544433 23565555443 111 111 11333 3444 11
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
++..+ +- ++|+.+-+.+.....+-+.+.+++|.|-++.-+|
T Consensus 55 ~~l~~--~~--~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEE--FI--EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHH--HC--TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhh--hh--CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11111 11 3899999998777777888888999998876555
No 116
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=86.17 E-value=0.4 Score=45.71 Aligned_cols=92 Identities=34% Similarity=0.492 Sum_probs=48.6
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCCc-eEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCC
Q 024349 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (269)
Q Consensus 89 VaInGfGrIGR~llR~l~~r~~~~l-~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P 167 (269)
|.|.|.|.+|+.+++.|.++. ++ +++.. +. +.+.+..+++. ..+ ..+. .+ .....|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~--~~~---~~~~------------~~-~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEK--LLG---DRVE------------AV-QVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----TT---TTEE------------EE-E--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhh--ccc---ccee------------EE-EEecCCH
Confidence 689999999999999998764 24 44433 33 33433333320 000 0111 11 1112233
Q ss_pred CCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 168 ~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
+.+.=--.+.|+||.|.|.+....-+...+++|+.
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~ 93 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVH 93 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-E
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCC
Confidence 22111013679999999999777777888888984
No 117
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=86.11 E-value=2.6 Score=34.03 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=52.4
Q ss_pred eEEEEc----CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 88 kVaInG----fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
+|+|+| -++.|+.+++.|.++ .+++..||.. ++. +.|.+ ++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 689999 599999999999874 3688889853 222 12211 21
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
.+.+++| ..+|+++-++..-...+....-.+.|++.|++..
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1122221 3789999999988888888888888999988854
No 118
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.01 E-value=0.61 Score=38.84 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=26.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+||+|+|.||+|..|.+.|.+. ..+|++|-..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeC
Confidence 457999999999999999999864 3688777543
No 119
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=85.77 E-value=2.9 Score=37.54 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=22.3
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|.| +|.||+.+++.|.++. .++.++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~ 30 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVAS 30 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEe
Confidence 478999 9999999999998753 4554443
No 120
>PLN02256 arogenate dehydrogenase
Probab=85.64 E-value=1.7 Score=41.03 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=25.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+++|+|+|+|.+|..+++.|.+. +.++++++..
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~ 68 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS 68 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence 36899999999999999998753 2577766543
No 121
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.88 E-value=0.23 Score=41.50 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.9
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhCC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r~ 109 (269)
+||+|.|. |.+|..++-.|..+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 48999998 999999998887653
No 122
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.76 E-value=1.2 Score=44.92 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=25.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|||+|||+||+.+++.|... .+++++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5899999999999999988653 368887753
No 123
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.41 E-value=1.6 Score=38.54 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|+|.|||++|+.+++.|.+. ..+|+++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~ 57 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE---GAKLIVA 57 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEE
Confidence 5799999999999999999875 2577744
No 124
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.37 E-value=1.3 Score=44.77 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|||+|||+||+.+++.|... .+++++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 35799999999999999988653 368887764
No 125
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.23 E-value=1.4 Score=43.04 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 57 DASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..++.+|+-..+-.. ....+. .-...+|||+|+|.||+.+++.+... .+++++.+
T Consensus 92 a~aVAE~v~~~lL~l-~r~~g~----~l~gktvGIIG~G~IG~~va~~l~a~---G~~V~~~D 146 (381)
T PRK00257 92 ARGVVDYVLGSLLTL-AEREGV----DLAERTYGVVGAGHVGGRLVRVLRGL---GWKVLVCD 146 (381)
T ss_pred hHHHHHHHHHHHHHH-hcccCC----CcCcCEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence 345667765554433 111111 11235799999999999999998754 36877664
No 126
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=84.07 E-value=3.1 Score=40.14 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=51.4
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
..+|-|-| .|-||.-+++.|++|. ..+. -.|+++.+.++..||.+.+.. ++.++++..
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~-gtVR~~~~~k~~~~L~~l~~a-------------------~~~l~l~~a 64 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVR-GTVRDPEDEKKTEHLRKLEGA-------------------KERLKLFKA 64 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEE-EEEcCcchhhhHHHHHhcccC-------------------cccceEEec
Confidence 35899999 9999999999999873 2232 246777777777777765520 111233332
Q ss_pred --CCCCCCCCCCCCccEEEEcCCC
Q 024349 165 --RDPLQLPWAELGIDIVIEGTGV 186 (269)
Q Consensus 165 --~~P~~i~w~~~gvDiVve~TG~ 186 (269)
.|++.|+=.-.|+|.||.+.-.
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCcc
Confidence 2455555445578888876544
No 127
>PRK14031 glutamate dehydrogenase; Provisional
Probab=83.73 E-value=3.1 Score=41.64 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++..+.-+++.-+... +. .. +..+|+|-|||.+|...++.|.+. .-+||+|.|
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~l-----~g~rVaVQGfGNVG~~aA~~L~e~---GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTK-GT---DL-----KGKVCLVSGSGNVAQYTAEKVLEL---GGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhc-CC---Cc-----CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4445665666555433 21 11 336899999999999999999875 369999998
No 128
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.66 E-value=1.7 Score=41.40 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=24.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+|+|+|+|+||+.+++.|.. . -++++++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~-~-~g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK-G-YGSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-c-CCCEEEEEC
Confidence 3589999999999999998842 1 246777664
No 129
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.44 E-value=1.2 Score=40.51 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred eeEEEEcCChHHHHHHHHHHh
Q 024349 87 LKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~ 107 (269)
.+|.|.|.|-+|..+++.|..
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar 32 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALAR 32 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 579999999999999999874
No 130
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=83.15 E-value=1.7 Score=39.81 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=24.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++||+|+|+|.+|+.+++.|... ..++++.+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~---g~~v~~~d 32 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA---GYSLVVYD 32 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC---CCeEEEEc
Confidence 46899999999999999988764 25666554
No 131
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=83.11 E-value=2.7 Score=46.32 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=57.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCce------------EEEEcCCCCccccccccc-ccccccccCceEEEecCCeE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD------------VVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNETI 152 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~------------iVaInd~~~~~~~a~Llk-yDS~hG~f~g~v~~~~~~~L 152 (269)
+.||+|.|.|+||+..++.|.+.. +.+ +|+|.|. +++....+.+ |.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~--~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~~~------------------ 627 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVK--TISYYGDDSEEPTDVHVIVASL-YLKDAKETVEGIE------------------ 627 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCc--CccccccccccccccEEEEECC-CHHHHHHHHHhcC------------------
Confidence 468999999999999999997643 233 5677776 3333222211 10
Q ss_pred EECCEEEEEEecCCCCCCC-CCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 153 SVDGKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 153 ~inGk~I~V~~~~~P~~i~-w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
+-+.+.+- ..|++++. += .++|+||-|++.....+-+...+++|+.
T Consensus 628 --~~~~v~lD-v~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 628 --NAEAVQLD-VSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred --CCceEEee-cCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 00112221 12333321 10 2689999999999999999999999874
No 132
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=82.86 E-value=6.5 Score=39.48 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=56.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
..||.|.|+|+-|+.++|.|.++. .++.+..+....+... . ..+.. ..|.+...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~--~------------------~~~~~--~~i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVTVSDDRPAPEGLA--A------------------QPLLL--EGIEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEEEEcCCCCccchh--h------------------hhhhc--cCceeecCc
Confidence 468999999999999999998763 4544333221111000 0 00000 112233223
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
.+. .+|. ..|+||-+=|...+.+...+..+.|++
T Consensus 62 ~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 333 5564 789999999999999999999999984
No 133
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=82.36 E-value=1.8 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=25.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
.+|||+|+|+||+.+++.|... .+++++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~---G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS---GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---cCEEEEEECc
Confidence 4799999999999999998753 4787766543
No 134
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=82.12 E-value=1.8 Score=41.42 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.2
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
|.++|.++|||.+|+..+|.+..+. .+++|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akp--e~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKP--ELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCC--CCceEEEEec
Confidence 4578999999999999999998763 4788776443
No 135
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.41 E-value=1.4 Score=36.14 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.7
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
||.|.|.|.+|..+++.|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~ 21 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS 21 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 589999999999999998753
No 136
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.20 E-value=2.8 Score=37.10 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=25.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaInd 120 (269)
.+||+|.|.|++|+.+++.|.......++ +++.++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~ 39 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR 39 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC
Confidence 36899999999999999988764322344 555554
No 137
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.17 E-value=3 Score=32.42 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=22.9
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 89 VaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|.|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 579999999999999998742 57777764
No 138
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.93 E-value=2.2 Score=39.17 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+|.|.||..+++.|.++. .+|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEE
Confidence 37999999999999999987652 5666664
No 139
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.60 E-value=3 Score=39.55 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||+|.|.|.+|..++..+..+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~ 28 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK 28 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999998877654
No 140
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.25 E-value=5.5 Score=38.81 Aligned_cols=40 Identities=35% Similarity=0.595 Sum_probs=33.8
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcc
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK 125 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~ 125 (269)
+.+|+||.|.|+|+|-+++.|..-.....+||+|.++ +++
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~ 44 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLE 44 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHH
Confidence 6689999999999999999998655456899999998 444
No 141
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=80.23 E-value=2.6 Score=39.56 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
.++|+|+|+|.||+.++|.+-++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~ 25 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA 25 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc
Confidence 46899999999999999999775
No 142
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.13 E-value=1 Score=42.61 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||+|.|.|.||..++-.|..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5899999999999999877755
No 143
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=79.97 E-value=1.4 Score=42.67 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred ceeeEEEEcCChHHHHHHHHHHh
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~ 107 (269)
+..+|+|.|+||||+.+++-|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh
Confidence 34689999999999999988865
No 144
>PLN02712 arogenate dehydrogenase
Probab=79.36 E-value=2.7 Score=43.99 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+++|+|+|+|+||+.+++.|.++ +.+|++++.
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~---G~~V~~~dr 83 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ---GHTVLAHSR 83 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 46899999999999999998764 257777654
No 145
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=79.31 E-value=5.5 Score=38.21 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCC-CceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~-~l~iVaIn 119 (269)
+||+|.|-|.||..++-.|..+... .+-++-|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999888655432 45555555
No 146
>PLN02712 arogenate dehydrogenase
Probab=78.97 E-value=2.6 Score=44.07 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+++||+|+|+|+||+.+++.|.+. +.+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~---G~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ---GHTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC---cCEEEEEECC
Confidence 457999999999999999998764 2577777643
No 147
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.76 E-value=2.9 Score=39.04 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|.|+|+||+.+++.|.... .++.+++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998652 46666654
No 148
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=77.56 E-value=8 Score=36.47 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=24.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
-||-|+| +|++|+.+++-+..-.+ + .+..||-
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~-~-~v~~V~p 39 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGT-N-IVGGVTP 39 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCC-C-EEEEECC
Confidence 4799999 99999999988876433 2 5556763
No 149
>PRK08507 prephenate dehydrogenase; Validated
Probab=77.52 E-value=3.8 Score=37.36 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||+|+|+|.+|..+++.|.... ...++++++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKG-LISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 7999999999999999987642 224555554
No 150
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.45 E-value=3.3 Score=41.85 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=24.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+|+|+|+|+|||.+++.+..+ ..+|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF---GARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 35899999999999999988765 25766653
No 151
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.90 E-value=14 Score=33.24 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=69.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|+|.|.||...++++-.+ ..+ ++++ +. +.+.+..+.+ +|. + ..++.+.. ..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~-~~-~~~r~~~a~~----~Ga---~--------~~i~~~~~----~~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA---GAARVVAA-DP-SPDRRELALS----FGA---T--------ALAEPEVL----AE 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEE-CC-CHHHHHHHHH----cCC---c--------EecCchhh----HH
Confidence 4799999999999988877554 244 6666 32 2222221111 121 1 01111000 00
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccc-cCCCCCceEEcCChhHHh
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVSNASCTTNC 244 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~-~~~~~~~IISnaSCTTn~ 244 (269)
.-.++.. ..++|+|||++|.-...+.+-..++.|.+-+++..+..+ .+ ..++... +..+ ..|+..-..+...
T Consensus 178 ~~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~---~~i~~~~~~~~~-~~i~g~~~~~~~~ 250 (280)
T TIGR03366 178 RQGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GP---VALDPEQVVRRW-LTIRGVHNYEPRH 250 (280)
T ss_pred HHHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cc---eeeCHHHHHhCC-cEEEecCCCCHHH
Confidence 0000111 137999999999755555566677766644444332211 11 1233332 2333 4566655545556
Q ss_pred HHHHHHHHhh
Q 024349 245 LAPFVKVMDE 254 (269)
Q Consensus 245 LaPvlkvL~d 254 (269)
+..+++.|.+
T Consensus 251 ~~~~~~~l~~ 260 (280)
T TIGR03366 251 LDQAVRFLAA 260 (280)
T ss_pred HHHHHHHHHh
Confidence 6777777765
No 152
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.88 E-value=5.2 Score=39.46 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=56.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+||.|.|.|.||+.+++.|..+.+ .+|... |. ..++.+.+. +++.++ + +.+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iA-dR-s~~~~~~i~--~~~~~~----v-----~~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIA-DR-SKEKCARIA--ELIGGK----V-----EALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEE-eC-CHHHHHHHH--hhcccc----c-----eeEEecc--------cC
Confidence 589999999999999999887643 454433 32 222222221 122111 1 1121211 11
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEe
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (269)
++.+.=--.+.|+||.|.+.|.+..-+...++.|+.-|-+|
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 21110000144999999999999998888999999654443
No 153
>PLN02494 adenosylhomocysteinase
Probab=76.81 E-value=5.9 Score=40.10 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|.|+|.||+.+++.+... ..+|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~---Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA---GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 4799999999999999988754 35777664
No 154
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.59 E-value=4.3 Score=37.73 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.3
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+||+|.|.|.+|+.+++.|.... .+|...+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~ 34 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG---HRVRVWS 34 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC---CEEEEEe
Confidence 358999999999999999987642 4655554
No 155
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.35 E-value=16 Score=35.81 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=48.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|.|.|.|.+|..+++.|.++. .+++.+... +.+....+.++ . +.. | |++.....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~----------l---~~~-----g--v~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAI----------L---EAL-----G--ATVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHH----------H---HHc-----C--CEEEECCC
Confidence 47999999999999999988653 566555422 21111111110 0 000 1 11211112
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
+. + ..++|+||.++|.--+.+.+....+.|.
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi 103 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI 103 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 22 1 1367999999998766666655566676
No 156
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.11 E-value=4.7 Score=36.37 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.2
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
||+|+|+|++|+.+++.|...
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC
Confidence 799999999999999998854
No 157
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=74.95 E-value=4.3 Score=37.63 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=24.3
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
||+|+|+|.+|+.+++.|.+.. .++++.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 7999999999999999998652 56666543
No 158
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.94 E-value=12 Score=34.81 Aligned_cols=94 Identities=16% Similarity=0.083 Sum_probs=48.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|+|.|.||...++++..+. . +++++.. +.+.+..+.+ +|. +. +++-+.-.+. +
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~--~~~~~~~a~~----lGa---~~--------vi~~~~~~~~--~ 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADV--SPRSLSLARE----MGA---DK--------LVNPQNDDLD--H 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeC--CHHHHHHHHH----cCC---cE--------EecCCcccHH--H
Confidence 47999999999999888776542 3 4554432 2233322221 221 10 1111000000 0
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
-.. .. .++|+||||+|.-...+.+-..++.|-+-|++
T Consensus 229 ~~~--~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 229 YKA--EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred Hhc--cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 000 01 25899999999754445566777776543333
No 159
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=73.45 E-value=17 Score=35.21 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=49.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccc---ccccccccccccCceEEEecCCeEEECCEEEEEEec
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a---~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~ 164 (269)
||.|.|.|.+|+.++|.|.++. .+| .+.|....+... .+++. -.| |+++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V-~~sD~~~~~~~~~~~~~~~~--------------------~~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEV-TVTDLKPNEELEPSMGQLRL--------------------NEG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEE-EEEeCCCCccchhHHHHHhh--------------------ccC--cEEEec
Confidence 5789999999999999998753 353 345541111000 01110 001 222222
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 165 ~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
.+++++. +.|+||-+.|.-.+.+......+.|.
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3344442 57899999999877777776667776
No 160
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=73.45 E-value=6.4 Score=33.06 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=30.7
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccc
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~L 130 (269)
|+|.| +|-||++.++++...+ ++|+++++.-..+.+.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q 42 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQ 42 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHH
Confidence 68999 9999999999987664 47899888654445544433
No 161
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=73.44 E-value=5.9 Score=32.83 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.0
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|.|.| +|.+|+.+++.|.++. .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 68899 8999999999999874 57766654
No 162
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=73.04 E-value=4.5 Score=37.08 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=24.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
||+|+|+|.+|+.+++.|.+. .++|++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA---GYQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC---CCeEEEEcC
Confidence 589999999999999998864 257776653
No 163
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=72.98 E-value=16 Score=36.25 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=50.8
Q ss_pred eeeEEEEcC----ChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEE
Q 024349 86 KLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (269)
Q Consensus 86 ~ikVaInGf----GrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V 161 (269)
+.+|+|+|. |.+|+.+++.|.+..+ .-+|..||-. |+.++ |. ++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf-~g~v~~Vnp~-----------~~~i~------------------G~--~~ 54 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGY-KGKIYPVNPK-----------AGEIL------------------GV--KA 54 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCC-CCcEEEECCC-----------CCccC------------------Cc--cc
Confidence 457999995 8899999999986532 1266677742 22211 11 11
Q ss_pred EecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 162 ~~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
+ .+.+++| ..+|+++-+++.-...+-+....+.|+|.++|
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1222332 25677777777766666666666777777655
No 164
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=72.80 E-value=7.3 Score=36.86 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
..||+|.|.|.||..++-.|..+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~ 28 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ 28 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc
Confidence 35999999999999999887765
No 165
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.74 E-value=7.6 Score=37.64 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=49.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|.|+|+|.+|+.+++.|.++. .++++..+. .+ .+.+ .+.. . + .. ..+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~---~~~~----~~~~-------~-~---------~~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LE---ALQS----CPYI-------H-E---------RY--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--cc---ccch----hHHH-------h-h---------hh--cCC
Confidence 37999999999999999988653 355444321 11 0100 0000 0 0 00 012
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
++.+. .+.|+||-+.|.-.+.+.+...++.|++
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 22221 2568999999998778888888899985
No 166
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.74 E-value=5.2 Score=38.57 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++|.|.|+|++|+.+++.|.++. .++++|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 37999999999999999987642 57777753
No 167
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=72.72 E-value=13 Score=35.14 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=27.3
Q ss_pred cccceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 82 ETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 82 ~~~~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+++.||++.| -|--|+++.|++-.. +.+++.-+.
T Consensus 15 ~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvs 51 (340)
T KOG4354|consen 15 KPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVS 51 (340)
T ss_pred ccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeee
Confidence 345678999999 899999999987655 346754443
No 168
>PLN02688 pyrroline-5-carboxylate reductase
Probab=72.65 E-value=6.4 Score=35.37 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCC-CCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~-~~l~iVaInd~ 121 (269)
+||+++|+|.+|..+++.|.+... ...++++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999986421 12266666343
No 169
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.55 E-value=2.1 Score=40.49 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEEcCChHHHHHHHHHHhCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRK 109 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~ 109 (269)
||+|+|.|.||..++..|..+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988877653
No 170
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=72.45 E-value=5 Score=36.80 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=55.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC---------CCcccccccccccccccc-cCceEEEecCCeEEECC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGT-FKADVKIVDNETISVDG 156 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~---------~~~~~~a~LlkyDS~hG~-f~g~v~~~~~~~L~inG 156 (269)
.+|+|-|||-+|+.+++.|.+. ...+|+|.|. .|++.+..+. + .+|. +..- ... ..++
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~---Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~--~-~~~~~v~~~----~~~--~~~~ 100 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAEL---GAKVVAVSDSSGAIYDPDGLDVEELLRIK--E-ERGSRVDDY----PLE--SPDG 100 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT---TEEEEEEEESSEEEEETTEEHHHHHHHHH--H-HHSSHSTTG----THT--CSST
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEecCceEEEcCCCchHHHHHHHH--H-HhCCccccc----ccc--cccc
Confidence 6899999999999999999986 3688999664 1222222211 1 1111 1100 000 0000
Q ss_pred EEEEEEecCCCCCCCCCCCCccEEEEcC-CCCCChhhHHHHHHcCCCEEEE
Q 024349 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 157 k~I~V~~~~~P~~i~w~~~gvDiVve~T-G~f~~~e~a~~Hl~aGakkVII 206 (269)
.+.+. +.+++ |+ ..+||.+=|. +.-++.+.+..-++.|||- |+
T Consensus 101 --~~~~~--~~~~i-l~-~~~DiliP~A~~~~I~~~~~~~~i~~~aki-Iv 144 (244)
T PF00208_consen 101 --AEYIP--NDDEI-LS-VDCDILIPCALGNVINEDNAPSLIKSGAKI-IV 144 (244)
T ss_dssp --SEEEC--HHCHG-GT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SE-EE
T ss_pred --eeEec--ccccc-cc-ccccEEEEcCCCCeeCHHHHHHHHhccCcE-EE
Confidence 01111 11112 43 5889888776 7778888887677888864 44
No 171
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.38 E-value=5.4 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|+++|+|++|..+++.|... ..++++.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~---g~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED---GHEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEEC
Confidence 799999999999999998864 257666553
No 172
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.27 E-value=13 Score=37.00 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=49.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec-C
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (269)
.+|.|.|+|++|+..++.|..+. .++++ .|. ..+....|.+ + | +.++.. .
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~------------------g--~~~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----R------------------G--VATVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----C------------------C--CEEEcCcc
Confidence 47999999999999999887642 45444 553 2221211110 0 1 111111 1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
.++.+. +.|+||.+.|.-.+.+......+.|++
T Consensus 64 ~~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi~ 96 (488)
T PRK03369 64 AVQQIA----DYALVVTSPGFRPTAPVLAAAAAAGVP 96 (488)
T ss_pred hHhHhh----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 223232 569999999998888777777677763
No 173
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=72.21 E-value=5.6 Score=34.73 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=21.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|||+|+|.|.+|-.++-++.+. .++++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEEEe
Confidence 5899999999999988888765 36887773
No 174
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=71.64 E-value=5.7 Score=36.88 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=24.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
||+|+|+|++|..+++.|.+. ..++++.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~---g~~V~~~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR---GHDCVGYDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC---CCEEEEEEC
Confidence 799999999999999998764 257666543
No 175
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=71.08 E-value=18 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=22.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-+|.|.|.|.||..+++++-.+. .+++++.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~ 214 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG---LKVTVIS 214 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 47899999999999888766542 4666553
No 176
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=70.68 E-value=7 Score=36.20 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|+|+|.||+.+++.|.... ...++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 58999999999999999887542 112555443
No 177
>PLN02602 lactate dehydrogenase
Probab=70.62 E-value=7.8 Score=37.48 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||+|.|.|.||..++-.|..+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~ 59 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ 59 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5999999999999999877755
No 178
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=70.38 E-value=2.9 Score=40.97 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+||.||||||+++++++... .+.+|.-.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~---gm~vI~~d 176 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM---GMHVIGYD 176 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc---CceEEeec
Confidence 4699999999999999987643 35655443
No 179
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=70.33 E-value=5.3 Score=41.30 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|-|.||||+|+.++|.|.++ ++++++|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~ 431 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDH 431 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC---CCCEEEEEC
Confidence 5799999999999999999865 368777743
No 180
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.26 E-value=6.3 Score=39.01 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=24.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|.|+|.||+.+++.+... ..+++++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~---Ga~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM---GARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---cCEEEEEe
Confidence 4899999999999999988754 35776663
No 181
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=69.59 E-value=50 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|+|.|.+|...++.|.+.. -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999888753 36666653
No 182
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.57 E-value=7.8 Score=35.65 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCC-CCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~-~~~l~iVaInd 120 (269)
.||+|.|.|.+|..+++.|.+.. ....++++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 47999999999999999987642 11245665654
No 183
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.52 E-value=8 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=24.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCC-CCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~-~~l~iVaIn 119 (269)
.+||+++|.|.+|..+++.|.++.. ..-++.+.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 3589999999999999999986531 122455444
No 184
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.77 E-value=5.5 Score=37.23 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+|.|.|.|-+|-.++..|...
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~ 52 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALART 52 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHc
Confidence 5799999999999999998754
No 185
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=68.72 E-value=10 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.5
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+++|.|.| .|.||+.+++.|.++. .+|+++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~ 47 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAG 47 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEE
Confidence 446899999 8999999999988752 466554
No 186
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.55 E-value=6.2 Score=40.56 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=26.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|.|.||||+|+.++|.|.++ +.++++|..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~ 431 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLER 431 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEEC
Confidence 35799999999999999999864 368888854
No 187
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=68.32 E-value=26 Score=34.97 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=28.2
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|+|-|||-+|+.+++.|++. .-++|++.|.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~---GAkvva~sds 239 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHEL---GAKVVAVSDS 239 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 36899999999999999999864 2588999886
No 188
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.10 E-value=33 Score=31.86 Aligned_cols=137 Identities=14% Similarity=0.186 Sum_probs=67.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
-+|.|+|.|.||..+++++.... .+++++.. +.+.+..+.+ +|. + ..++-+.... .+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~--~~~~~~~~~~----~Ga---~--------~~i~~~~~~~---~~ 224 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDI--DPEKLEMMKG----FGA---D--------LTLNPKDKSA---RE 224 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHH----hCC---c--------eEecCccccH---HH
Confidence 47999999999999888776542 46666632 2233332211 121 0 0111100000 00
Q ss_pred C-CCC-CC-CCCCcc----EEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCc-cccCCCCCceEEcC
Q 024349 167 P-LQL-PW-AELGID----IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVSNA 238 (269)
Q Consensus 167 P-~~i-~w-~~~gvD----iVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~-~~~~~~~~~IISna 238 (269)
. +.+ .+ ...|+| +|+||+|.-...+.+-..++.|-+-+++..+.. ..+ ++. +.+..+ ..++.+-
T Consensus 225 ~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~~~g~~ 296 (349)
T TIGR03201 225 VKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA--KTE-----YRLSNLMAFH-ARALGNW 296 (349)
T ss_pred HHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC--Ccc-----cCHHHHhhcc-cEEEEEe
Confidence 0 000 01 113554 899999976555556677777654333433321 111 121 122222 3566655
Q ss_pred ChhHHhHHHHHHHHhh
Q 024349 239 SCTTNCLAPFVKVMDE 254 (269)
Q Consensus 239 SCTTn~LaPvlkvL~d 254 (269)
.|+...+..+++.|.+
T Consensus 297 ~~~~~~~~~~~~~i~~ 312 (349)
T TIGR03201 297 GCPPDRYPAALDLVLD 312 (349)
T ss_pred cCCHHHHHHHHHHHHc
Confidence 5666667777777765
No 189
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.89 E-value=21 Score=35.37 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=49.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.||+|.|+|+-|+..+|.|..+. .+++ +.|..+....... ..|.-.+. .+....+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v~-~~d~~~~~~~~~~-------------------~~l~~~~~--~~~~~~~ 63 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQA-LTLFCNAVEAREV-------------------GALADAAL--LVETEAS 63 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEEE-EEcCCCcccchHH-------------------HHHhhcCE--EEeCCCC
Confidence 47999999999999999998653 3433 4443111100000 00100111 1111223
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
++.+ .++|+||-+.|.-.+.+......+.|.+
T Consensus 64 ~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i~ 95 (468)
T PRK04690 64 AQRL----AAFDVVVKSPGISPYRPEALAAAARGTP 95 (468)
T ss_pred hHHc----cCCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 3333 2579999999998887777776677763
No 190
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.23 E-value=35 Score=31.75 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=21.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-+|.|.|.|.||...+.++.... ...+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY-PESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-CCCcEEEEe
Confidence 47999999999998777654211 113565553
No 191
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=67.19 E-value=15 Score=34.49 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.8
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+||+|.|. |.+|..++..|.... ...+++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g-~~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKED-VVKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CCCEEEEE
Confidence 48999995 999999999888753 11245554
No 192
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=66.76 E-value=23 Score=34.78 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred eeEEEEcCChHHHH-HHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~-llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
.+|.|.|.|..|+. ++|.|.++. .+|. +.|....+....|- .. | ++++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V~-~~D~~~~~~~~~l~-----------------~~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKVS-GSDLKESAVTQRLL-----------------EL-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeEE-EECCCCChHHHHHH-----------------HC-----C--CEEeCCC
Confidence 47999999999999 799988753 4543 45541111111110 01 1 2222223
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
+++.++ ++|+||-+.|.-.+.+......+.|.
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 344442 57899999998877776666666665
No 193
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.63 E-value=9 Score=35.11 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|.|.|.+|..+++.|.... .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 58999999999999999987642 4554443
No 194
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.46 E-value=7.4 Score=39.33 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+-+|.|.|+||+||.++|.|.++. .++++|..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 357999999999999999998753 58888854
No 195
>PRK08818 prephenate dehydrogenase; Provisional
Probab=66.34 E-value=8.8 Score=37.47 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=23.6
Q ss_pred eeeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEE
Q 024349 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 86 ~ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaI 118 (269)
..+|+|+|+ |.||+.+++.|-++. ..+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 368999998 999999999987541 3454443
No 196
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=65.62 E-value=8.9 Score=35.56 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.||+|+|.|.+|..+++.|.+.. .++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998642 46665653
No 197
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=65.46 E-value=31 Score=35.80 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.4
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
...|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval 110 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG---FRVRAG 110 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CeEEEE
Confidence 34689999 8999999999998753 465554
No 198
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=65.17 E-value=9.9 Score=35.58 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=24.8
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..||.|.|+|++|+.+++.|.... .++.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 358999999999999999987642 46655543
No 199
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.93 E-value=22 Score=33.88 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeeEEEEcC-ChHHHHHHHHHHhC
Q 024349 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGf-GrIGR~llR~l~~r 108 (269)
+.||+|.|. |.||..++-.|..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 579999997 99999999877754
No 200
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=64.66 E-value=4.2 Score=36.26 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
..+|.|.|.|-+|-.++..|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc
Confidence 35899999999999999988754
No 201
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.50 E-value=8.8 Score=37.22 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+|.|.+|..++..|.++. .++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEE
Confidence 37999999999999999988652 4776664
No 202
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=64.29 E-value=9.4 Score=36.80 Aligned_cols=30 Identities=37% Similarity=0.385 Sum_probs=23.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|+|+|.+|+.+++.|... .+++++..
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~~ 47 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS---GVDVVVGL 47 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC---CCEEEEEE
Confidence 5799999999999999998754 35665543
No 203
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.21 E-value=98 Score=27.95 Aligned_cols=128 Identities=22% Similarity=0.188 Sum_probs=67.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
-+|.|.|.|.+|..+++++..+ ..+++++.+.. +....+-+ +|. + ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~---g~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ---GAEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Cc
Confidence 4689999999999988876654 25777665431 22221111 111 0 00110 00
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhHH
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLA 246 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~La 246 (269)
+ .+.++|++++++|.....+.+.++++.|..-+++. .... . +.+++...+... ..+.....-....+.
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g-~~~~-~----~~~~~~~~~~~~-~~i~~~~~~~~~~~~ 288 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG-IHMS-D----IPAFDYELLWGE-KTIRSVANLTRQDGE 288 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc-CCCC-C----CCccchhhhhCc-eEEEEecCCCHHHHH
Confidence 0 12378999999887766777888988766333332 1111 1 123333222222 345444444455566
Q ss_pred HHHHHHhh
Q 024349 247 PFVKVMDE 254 (269)
Q Consensus 247 PvlkvL~d 254 (269)
.+++.+.+
T Consensus 289 ~~~~l~~~ 296 (329)
T cd08298 289 EFLKLAAE 296 (329)
T ss_pred HHHHHHHc
Confidence 66665543
No 204
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=64.16 E-value=15 Score=33.63 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=67.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|+|.|.||..+++.+..+. .+ ++++... .+.+..+.+ +|. + ..++-+.-.. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~~--~~~~~~~~~----~ga---~--------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDPS--PERLELAKA----LGA---D--------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHHHHHHH----hCC---C--------EEEcCCcchH---H
Confidence 47999999999999888776542 44 6666432 222222211 121 0 1111110000 0
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCccccCCCCCceEEcCChhHHhH
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTTn~L 245 (269)
...++. ...++|+||||+|.....+.+-..++.|.+-+++..+. + +.+-. ....+..+ ..|+..-.++...+
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~-~~~~~--~~~~~~~~-~~i~g~~~~~~~~~ 293 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG---E-LTIEV--SNDLIRKQ-RTLIGSWYFSVPDM 293 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC---C-cccCc--HHHHHhCC-CEEEEEecCCHHHH
Confidence 000000 01379999999997655455567787766444443322 1 11111 11223223 34555444455566
Q ss_pred HHHHHHHhh
Q 024349 246 APFVKVMDE 254 (269)
Q Consensus 246 aPvlkvL~d 254 (269)
.-+++.+.+
T Consensus 294 ~~~~~~~~~ 302 (339)
T cd08239 294 EECAEFLAR 302 (339)
T ss_pred HHHHHHHHc
Confidence 777777765
No 205
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.02 E-value=12 Score=34.30 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCC-CCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~-~~l~iVaIn 119 (269)
+||+++|.|.+|+.+++.|..+.. ...++++.+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 489999999999999999986521 123555554
No 206
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.93 E-value=35 Score=33.83 Aligned_cols=83 Identities=24% Similarity=0.280 Sum_probs=49.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec-C
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (269)
.||.|.|+|..|+.+++.|..+. .++.+ .|. +......+++ + .| |+++.. .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G---~~V~~-~D~-~~~~~~~~l~---------------~------~g--i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG---CDVVV-ADD-NETARHKLIE---------------V------TG--VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CEEEE-ECC-ChHHHHHHHH---------------h------cC--cEEEeCCC
Confidence 47999999999999999998652 35443 443 1111111110 0 01 122222 2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
++++++ +.|+||-+.|.-.+........+.|.
T Consensus 68 ~~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 233332 67899999999877777776666776
No 207
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=63.78 E-value=10 Score=37.75 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=23.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|.|+|.||+.+++.+... ..+|++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL---GARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEc
Confidence 4799999999999999988754 24766553
No 208
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=63.49 E-value=13 Score=32.22 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=21.5
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||+|+|.|.+|+.++..+... .++++.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d 29 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYD 29 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEE
Confidence 699999999999999887754 36765554
No 209
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=63.47 E-value=9.7 Score=34.66 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|++++|.|+|.||.-+++.|... ..+|+..+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a---g~eV~igs 31 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA---GHEVIIGS 31 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC---CCeEEEec
Confidence 35899999999999999988753 25766553
No 210
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=63.30 E-value=41 Score=32.07 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.|.|.||..+++++..+. .+++++.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~ 209 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVIS 209 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEe
Confidence 46899999999999888776542 4666664
No 211
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=62.81 E-value=10 Score=36.67 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.0
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+|+|+| +|.+|+.+++.|..+. .++.+++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 36899999 9999999999998642 4544443
No 212
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.70 E-value=23 Score=34.31 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=50.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|.|.|-|++|+.+++.|.++. .+|.++ |...-+.+..+++ . |.-.| ++++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~----------~--------l~~~~--~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE----------E--------LGELG--IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH----------H--------HHhcC--CEEEeCCc
Confidence 57999999999999999998763 455444 3311111111110 0 00001 22332222
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
+++. ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 1268999999999888887776666676
No 213
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=62.40 E-value=37 Score=30.62 Aligned_cols=85 Identities=22% Similarity=0.200 Sum_probs=49.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
-+|.|+|.|.+|..+++++..+. .+++++... .+....+.+ +|. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~---~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGRH--SEKLALARR----LGV---ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC---cEE--------eCc--------cc
Confidence 46899999999999998876652 566666432 333333322 221 101 100 00
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCE
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 203 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakk 203 (269)
+ .++ .++|+++||+|.-...+.+..+++.+.+-
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~ 241 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGTV 241 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 0 222 37999999998644456666788776533
No 214
>PRK06545 prephenate dehydrogenase; Validated
Probab=62.25 E-value=11 Score=35.99 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.1
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
+|+|+|+|.||..+++.|..+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc
Confidence 699999999999999998764
No 215
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=62.23 E-value=5.8 Score=35.40 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+|.|.|.|-+|..+++.|...
T Consensus 22 ~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999998753
No 216
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.19 E-value=14 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.5
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRK 109 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~ 109 (269)
.+.+|.+.| +|++||.+.+.|.+|.
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCC
Confidence 457899999 9999999999999985
No 217
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.86 E-value=12 Score=34.80 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
++||+|+|.|.||..++..|.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999888753
No 218
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=61.75 E-value=12 Score=34.90 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=23.1
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||+++|.|++|..+++.|.... +++.+.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 7999999999999999998642 4655443
No 219
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=61.66 E-value=29 Score=32.76 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=24.2
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
-||-|.| +|.+|+.+++.|.+..+ . ++..||-
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~-~-~v~pVnp 41 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGT-N-IVGGVTP 41 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCC-C-EEEEECC
Confidence 5899999 99999999999886432 2 4446663
No 220
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=61.47 E-value=14 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=22.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+||+|.| .|.+|..+++.|.+.. .+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEE
Confidence 4799997 9999999999998652 355444
No 221
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=60.72 E-value=27 Score=32.85 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=50.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|+|-|.||..+++++..+. . .++++.. +.+.+..+.+ +|. + ..++.+.-... +
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~--~ 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGDPNAV--E 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCchhHH--H
Confidence 47999999999998888776542 4 4555532 2233332211 221 0 01111000000 0
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (269)
...++ ...++|+||||+|.-...+.+-..++.|-+-|++..+
T Consensus 251 ~i~~~--~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 251 QVREL--TGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred HHHHH--hCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccC
Confidence 00001 1127899999999755556666777776644444433
No 222
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=60.46 E-value=14 Score=33.97 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|..+++.+... ..+++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEEEEe
Confidence 4799999999999999988754 25766664
No 223
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=59.95 E-value=13 Score=35.40 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=23.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|+|.+|+.+++.|... .++++...+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s---G~~Viv~~~ 34 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS---GLNVIVGLR 34 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---CCeEEEEEC
Confidence 4799999999999999999764 256554433
No 224
>PLN02427 UDP-apiose/xylose synthase
Probab=59.80 E-value=17 Score=34.43 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=26.9
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+++||.|-| .|.||+.+++.|.++. ..+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 346899999 9999999999998763 257777753
No 225
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=59.77 E-value=5.5 Score=38.16 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+|.|.|.|.+|..+++.|...
T Consensus 25 ~~VlIiG~GglGs~va~~La~a 46 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA 46 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999988754
No 226
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.34 E-value=14 Score=35.64 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.8
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+.+|.|.|+|++|+.+++.|.++. .++++|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 468999999999999999987642 57777743
No 227
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.32 E-value=40 Score=32.61 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=49.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCC--ccc-ccccccccccccccCceEEEecCCeEEECCEEEEEEe
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~--~~~-~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~ 163 (269)
.+|.|.|.|++|+..+|.|.++. .+|++. |... ... ...|- + .| +++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G---~~V~~~-d~~~~~~~~~~~~l~----------------~------~g--~~~~~ 57 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG---ANVTVN-DGKPFSENPEAQELL----------------E------EG--IKVIC 57 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CEEEEE-cCCCccchhHHHHHH----------------h------cC--CEEEe
Confidence 46899999999999999988653 454443 4311 100 01110 0 01 11222
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 164 ~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
..++.++. +.++|+||-+.|.-.+........+.|.
T Consensus 58 ~~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 58 GSHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22333221 1147999999999888777777777777
No 228
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.22 E-value=29 Score=34.10 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=49.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.||+|.|+|+.|+.+++.|..+. .++. +.|..+......+++ .+.-.| +.+....+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~~~~~~~~~~~~------------------~l~~~g--i~~~~~~~ 70 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG---AKVT-AFDKKSEEELGEVSN------------------ELKELG--VKLVLGEN 70 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CEEE-EECCCCCccchHHHH------------------HHHhCC--CEEEeCCC
Confidence 37999999999999999988653 3543 444311100000000 011112 12221121
Q ss_pred -CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 167 -PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 167 -P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
++++ .+.|+||-+.|.-.+.+......+.|.+
T Consensus 71 ~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i~ 103 (458)
T PRK01710 71 YLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGAY 103 (458)
T ss_pred ChHHh----ccCCEEEECCCCCCCchHHHHHHHcCCc
Confidence 3333 2578999999988787777777777874
No 229
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.89 E-value=60 Score=31.60 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=49.6
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCC-cccccccccccccccccCceEEEecCCeEEECCEEEEEEec-C
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~-~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (269)
-|.|+|.|.+|+.++|.|.++. .++. +.|..+ ...... |.-.+.-+++... .
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~~~~~~~~~~----------------------l~~~~~g~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPFA-VMDSREQPPGLDT----------------------LAREFPDVELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeEE-EEeCCCCchhHHH----------------------HHhhcCCcEEEeCCC
Confidence 4899999999999999998753 4543 445311 100001 1000001233222 3
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
++++++ +.|+||-+.|.-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 455442 57899999999877777776666776
No 230
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=58.71 E-value=33 Score=31.50 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=24.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|.|.|.+||.+++.|..+.. -+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 479999999999999999986531 25555654
No 231
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=58.57 E-value=11 Score=37.21 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASH 129 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~ 129 (269)
.||+|.| +|-||++.++++...+ .+++++++.-..+.+.+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~ 44 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVE 44 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHH
Confidence 4899999 9999999999876543 3689888865444444443
No 232
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=58.40 E-value=9.7 Score=34.62 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=20.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||+|.|+|.+|..+++.|.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 4799999999999999999865
No 233
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.02 E-value=15 Score=33.65 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|+.++..|..+. .+|+.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 37999999999999999887642 4655553
No 234
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=57.78 E-value=15 Score=34.10 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++|+|+|.|.+|..++..|..+. .+|++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 47999999999999999888652 56666643
No 235
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.71 E-value=57 Score=32.38 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=22.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV 117 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVa 117 (269)
.+|.|.|+|+.|+.++|.|..+. .++.+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G---~~v~~ 35 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG---ARLRV 35 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC---CEEEE
Confidence 37999999999999999998653 45443
No 236
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=57.68 E-value=12 Score=35.07 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+|+|+|.|.||+.+++.|..+.. -+++.++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~ 209 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIAN 209 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEe
Confidence 3689999999999999999876421 2444454
No 237
>PRK07680 late competence protein ComER; Validated
Probab=57.66 E-value=10 Score=34.48 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=19.2
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
+|+|+|.|.+|+.+++.|.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC
Confidence 799999999999999998764
No 238
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.34 E-value=22 Score=34.62 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=22.2
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
||.|+|.|..|+..+|.|..+. .++.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~~~ 29 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVVVS 29 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEEEE
Confidence 6899999999999999988652 454443
No 239
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=57.26 E-value=6.6 Score=37.65 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.9
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
||.|.|.|-+|-.+++.|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999754
No 240
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=56.74 E-value=18 Score=27.21 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999988764
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.72 E-value=18 Score=33.82 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+||+|.|.|.+|..++..|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999887642 46655554
No 242
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=56.57 E-value=18 Score=35.43 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=51.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEE-EEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~-V~~~~ 165 (269)
-.|+|.|.|-||-....-+.... --+|++|. + ..+++..-.++--| =.+|.+... +..
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD-~-~~~Kl~~A~~fGAT---------------~~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVD-I-NPEKLELAKKFGAT---------------HFVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcC--CceEEEEe-C-CHHHHHHHHhcCCc---------------eeecchhhhhHHH--
Confidence 46999999999987665443321 23777774 3 33333322222211 123433221 110
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
.. ..-++.|+|++|||+|.-..++.+-.....+=+-|+|
T Consensus 246 ~i--~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 246 AI--VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HH--HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 00 1123349999999999887666554444443333454
No 243
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=56.56 E-value=17 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|+.++..+..+ ..+|+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEe
Confidence 4799999999999999988764 25766654
No 244
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=56.51 E-value=12 Score=35.22 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=58.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC--CCcccccccccccccccccCceEEEecCCeEEECCE-EEEEE-
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVV- 162 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~--~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk-~I~V~- 162 (269)
-+|.|.|.|-+|--.+++|....-.++.+|-..+. ..++.--|-+. ++.|+-.-++. ++.-..||=. ++..+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 47999999999999999987433234444333332 23333333332 34555332222 2222223321 11111
Q ss_pred ---ecCCCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 163 ---SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 163 ---~~~~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
.+++-+++-. .+.||||||.-....+-.+-.....-.-+||-
T Consensus 107 ~f~t~en~~~~~~--~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 107 DFITEENLEDLLS--KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred hhhCHhHHHHHhc--CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence 1112222322 38999999998887776555544432234443
No 245
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=56.44 E-value=18 Score=32.75 Aligned_cols=30 Identities=37% Similarity=0.445 Sum_probs=22.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|.|.|.+|..++..|.+. + .++..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g--~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G--HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C--CeEEEEE
Confidence 3799999999999999988754 2 3554444
No 246
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=56.21 E-value=19 Score=33.75 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCC-CCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~-~~~l~iVaInd 120 (269)
+||++.|+|.+|+.+++-|+... -+.-+|++.+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 58999999999999999998764 12245555543
No 247
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.30 E-value=20 Score=33.11 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=23.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|..++..|... ..+++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEE
Confidence 4799999999999999988754 25666554
No 248
>PRK06444 prephenate dehydrogenase; Provisional
Probab=55.28 E-value=11 Score=33.53 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHh
Q 024349 87 LKVAING-FGRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~ 107 (269)
+||+|+| .|+.||.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~ 22 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD 22 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh
Confidence 4799999 89999999998864
No 249
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.69 E-value=89 Score=30.27 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec-C
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (269)
.+|.|.|+|..|+..++.|..+ + .++.+ .|...... . .+.+. .| +.++.. .
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~-G--~~v~~-~D~~~~~~------------------~---~~~l~-~g--~~~~~~~~ 58 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLAR-G--VTPRV-IDTRITPP------------------G---LDKLP-EN--VERHTGSL 58 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-C--CeEEE-EcCCCCch------------------h---HHHHh-cC--CEEEeCCC
Confidence 4799999999999999977654 2 45443 44311000 0 00010 01 122221 1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
++..+ .+.|+||-+.|.-.+.+......+.|++
T Consensus 59 ~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~g~~ 91 (438)
T PRK03806 59 NDEWL----LAADLIVASPGIALAHPSLSAAADAGIE 91 (438)
T ss_pred CHHHh----cCCCEEEECCCCCCCCHHHHHHHHCCCe
Confidence 22222 2468999999998888888888888985
No 250
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.60 E-value=19 Score=32.90 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=23.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|..++..+..+. .+++.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 47999999999999999887652 4666553
No 251
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=54.31 E-value=16 Score=36.00 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=33.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~L 130 (269)
.|+.|.| +|-||.+-|.++...+ .+|+++++.-...++.+.-.
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q 45 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQ 45 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHH
Confidence 5899999 9999999999887654 56899998766555554433
No 252
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=54.18 E-value=8.3 Score=37.08 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
..+|.|.|.|-+|..++..|...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999988754
No 253
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.94 E-value=87 Score=30.53 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=51.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEec-C
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~-~ 165 (269)
.+|.|.|.|.+|+..++.|.... ...++. +.|....... .+.|.- | ++++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~---------------------~~~l~~-g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPG---------------------QEQLPE-D--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchh---------------------HHHhhc-C--CEEEeCCC
Confidence 47999999999999999888652 124443 4443110000 001110 1 233222 2
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak 202 (269)
++++++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi~ 94 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGIP 94 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 455552 578999999998887777776677763
No 254
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.87 E-value=82 Score=30.63 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=50.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
.+|.|.|.|.+|+.++|.|.++. .++++. |. ...+....| +.. ..| +.++...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~-d~~~~~~~~~~l-----------------~~~---~~g--i~~~~g~ 59 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAY-DAELKPERVAQI-----------------GKM---FDG--LVFYTGR 59 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCCCchhHHHH-----------------hhc---cCC--cEEEeCC
Confidence 47999999999999999998763 455444 43 111100001 000 011 2232222
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
.++.+ + .+.|+||-+.|.-.+.+......+.|.
T Consensus 60 ~~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 60 LKDAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CCHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22221 1 267999999999888887777777776
No 255
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.69 E-value=8 Score=35.19 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||.|.|.|-+|..++..|...
T Consensus 25 ~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc
Confidence 5799999999999999998754
No 256
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=53.14 E-value=19 Score=35.30 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+|.|.+|..++..|.++. .++++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEe
Confidence 58999999999999999988753 5777775
No 257
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.87 E-value=27 Score=34.31 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=26.0
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+.++|-|-| .|.||+.++|.|.++. .+|+++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 456899999 9999999999999763 5776664
No 258
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=52.52 E-value=21 Score=35.43 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=22.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|+|.|+|.||+.+++.+.... .+++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 47999999999999999886542 466554
No 259
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=51.52 E-value=19 Score=34.58 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccEEEEcCCCCCChhhHHHHHHcCCCEEEEecC-CCCCCCCeEEeecCccccCCCCCceEEcCChhH
Q 024349 177 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDHEVANIVSNASCTT 242 (269)
Q Consensus 177 vDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~Dip~iV~GVN~~~~~~~~~~IISnaSCTT 242 (269)
-|++|...-.-...+-.++|++-|| +|+.+- .+ |+.+.|.-+|.=.+-+ -.+|+.++-.|
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~--dvd~~vk~~~~V~Ii~--GGlV~~s~~it 291 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPK--DVDTSVKNVGGVRIIP--GGLVEHSLDIT 291 (351)
T ss_pred cceEEEEeecCCCceechhhccCCe--EEEcCCcCc--ccccccccCCCeEEec--CccccCccccc
Confidence 3555555444445566789999999 888763 33 5556666666332222 24555544333
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.52 E-value=77 Score=30.83 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=70.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
.-+|+|+|+|=.|...++.+-.. ..+++++.-. .+++....+ . +....+|.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~--~~K~e~a~~----l-----------GAd~~i~~~-------- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRS--EEKLELAKK----L-----------GADHVINSS-------- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCC--hHHHHHHHH----h-----------CCcEEEEcC--------
Confidence 35899999998888777766533 1588888654 222211111 1 111222221
Q ss_pred CCCCCC-CCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCcc-ccCCCCCceEEcCChhHH
Q 024349 166 DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTN 243 (269)
Q Consensus 166 ~P~~i~-w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~-~~~~~~~~IISnaSCTTn 243 (269)
+++.+. +.+ -+|++|++.+ ..+-+.+-..|+.|-.-|++-.|... +.|.+ +.. .+-.. ..|+.+..=|-+
T Consensus 219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~-~~~~~----~~~~li~~~-~~i~GS~~g~~~ 290 (339)
T COG1064 219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGG-PIPLL----PAFLLILKE-ISIVGSLVGTRA 290 (339)
T ss_pred CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCc-ccCCC----CHHHhhhcC-eEEEEEecCCHH
Confidence 121111 111 1899999999 88888888888876655666555311 22211 111 11122 456666655555
Q ss_pred hHHHHHHHHh
Q 024349 244 CLAPFVKVMD 253 (269)
Q Consensus 244 ~LaPvlkvL~ 253 (269)
=+--+|+...
T Consensus 291 d~~e~l~f~~ 300 (339)
T COG1064 291 DLEEALDFAA 300 (339)
T ss_pred HHHHHHHHHH
Confidence 5544554443
No 261
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=50.97 E-value=22 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=23.8
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|.|-| +|.||+.+++.|.++. .+++++..
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 688999 9999999999999873 45555543
No 262
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=50.96 E-value=22 Score=34.84 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|+|.||+.+++.|.... --++++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeC
Confidence 58999999999999999987642 135555654
No 263
>PLN02778 3,5-epimerase/4-reductase
Probab=50.52 E-value=17 Score=33.44 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.6
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r 108 (269)
+++||-|-| .|.||+.+++.|.++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~ 32 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQ 32 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC
Confidence 567999999 999999999999876
No 264
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=50.49 E-value=19 Score=36.20 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|+|..|..+++.|.++. .+|.+.|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 37999999999999999998753 57666654
No 265
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=50.41 E-value=27 Score=30.51 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=17.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.++.|.|||.+||-+++.|...
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~ 45 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL 45 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT
T ss_pred CEEEEeCCCcccHHHHHHHhhC
Confidence 4799999999999999998765
No 266
>PRK08655 prephenate dehydrogenase; Provisional
Probab=50.11 E-value=23 Score=35.01 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=23.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+| +|.+|+.+++.|.++. .++.++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799998 9999999999987642 4555443
No 267
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=50.05 E-value=7.4 Score=39.33 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=24.3
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+|+|+|-|.+|-..+..|..+ ..+++++..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~ 168 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEA 168 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEec
Confidence 35899999999999888877654 256666653
No 268
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=49.94 E-value=24 Score=34.10 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+.+|.|.|+|++|+.+++.+.... .++++++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d 197 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILD 197 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEE
Confidence 357999999999999999987642 4666664
No 269
>PRK10537 voltage-gated potassium channel; Provisional
Probab=49.53 E-value=30 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=24.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-.|.|.|+|++|+.+++.|.++. .+++.|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 46999999999999999987652 4666665
No 270
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=49.45 E-value=22 Score=34.66 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=26.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCccccccc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~L 130 (269)
+||+|+|.|.+|..++.++. . ..++++++- +.+.+..|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~---G~~VigvD~--d~~kv~~l 38 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q---NHEVVALDI--LPSRVAML 38 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h---CCcEEEEEC--CHHHHHHH
Confidence 37999999999999996654 3 268777763 34444433
No 271
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=49.44 E-value=25 Score=35.28 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+|.|.+|+.++..+... .++|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~---G~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA---GIDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEe
Confidence 5899999999999999988754 35665554
No 272
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=49.28 E-value=27 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++|.|-| .|.||+.+++.|.++. ..+|++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEe
Confidence 4799999 8999999999998652 25777775
No 273
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.26 E-value=27 Score=31.97 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=23.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|.+|..++..+..+ ..+++..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEe
Confidence 5799999999999999988754 25665553
No 274
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=49.24 E-value=21 Score=35.33 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=24.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++||+|+|.|.+|..++..|.+ ..++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~----~~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK----SRQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc----CCEEEEEeC
Confidence 3689999999999999998654 268887753
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=48.95 E-value=1.2e+02 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r 108 (269)
.+-||+|.|.|.||...++.+...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l 187 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL 187 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC
Confidence 356899999999999988887654
No 276
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=48.84 E-value=78 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
-+|.|+|.|.||...++++-.+ .. +++++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMA---KASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4799999999999988876543 24 566663
No 277
>PRK06223 malate dehydrogenase; Reviewed
Probab=48.83 E-value=29 Score=32.09 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=22.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+||+|.|.|.+|..++..+..+. .. +++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~-~~-ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE-LG-DVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-Ce-EEEEE
Confidence 69999999999999998877542 11 55544
No 278
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=48.50 E-value=1e+02 Score=28.18 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
-.|.|.|.|.+|+.+++.+... ..+++++... .+...++.+ +|. + ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~---G~~v~~~~~~--~~~~~~~~~----~g~---~--------~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL---GAEVTAFSRS--PSKKEDALK----LGA---D--------EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEEEcCC--HHHHHHHHH----cCC---c--------EEecCcchhh-----
Confidence 4688889999999888776543 2466555432 122222211 110 0 0011110000
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
...+ ..++|+|++|+|.-...+.+-.+++.+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0111 2479999999997644566667777655
No 279
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=48.36 E-value=33 Score=29.06 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=24.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+.||+|.|.|++|+..++++... ..+++.+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~ 51 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDE 51 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEES
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccC
Confidence 457999999999999999998764 256666654
No 280
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=47.95 E-value=71 Score=33.97 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=48.5
Q ss_pred eEEEEcCChHHHHH-HHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInGfGrIGR~l-lR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+|.|.|.|..|... +|.|.++. .+|. +.|......+..|- + . | |+++...+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V~-~sD~~~~~~~~~L~----------------~-~-----g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSVS-GSDLSEGKTVEKLK----------------A-K-----G--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeEE-EECCCCChHHHHHH----------------H-C-----C--CEEeCCCC
Confidence 69999999999987 89888653 4543 45542211122211 0 0 1 12222223
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
++.++ +.|+||-+.|.-.+.+......+.|.
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 33332 57899999998877776666666665
No 281
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=47.78 E-value=60 Score=29.20 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=50.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
-+|.|+| .|.+|..+++++..+ ..+++++... .+....+.+ +|. + .+ ++.+.-.+. +
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s--~~~~~~l~~----~Ga---~-------~v-i~~~~~~~~--~ 202 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGS--DDKVAWLKE----LGF---D-------AV-FNYKTVSLE--E 202 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHH----cCC---C-------EE-EeCCCccHH--H
Confidence 4789999 899999988877654 2566665432 233333322 221 0 00 110000000 0
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
.. ..+...|+|+|+|++|. ...+.+..+++.|.+-|.+
T Consensus 203 ~v--~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 203 AL--KEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HH--HHHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 00 01222479999999996 4455566777766543333
No 282
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=47.72 E-value=21 Score=36.23 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+||++|+|..|+.+++.|.++ .+++.+-|.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~---G~~V~V~NR 37 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK---GFPISVYNR 37 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC---CCeEEEECC
Confidence 35899999999999999999865 368777765
No 283
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=47.69 E-value=18 Score=34.41 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=27.0
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCC------CCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~------~~~l~iVaInd~ 121 (269)
.++|+|+|.|-|||.+++.+.... .-.+++|+|.+.
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 478999999999999998665432 123588888774
No 284
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=47.58 E-value=28 Score=31.62 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||+|+|.|.+|..++..|.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~ 22 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA 22 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC
Confidence 4799999999999999988764
No 285
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=47.40 E-value=21 Score=35.85 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|+|+|+|++|+.+++.|.++. ++|++.|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~dr 30 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNR 30 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 4899999999999999998753 57776664
No 286
>PLN02740 Alcohol dehydrogenase-like
Probab=47.37 E-value=76 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
-+|.|+|.|.||..+++++..+. . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 47999999999999888776542 4 466553
No 287
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.91 E-value=29 Score=28.14 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=21.6
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 89 VaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|+|+|.|.||..++-.|.+. + .++..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g--~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G--HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T--CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHC-C--CceEEEEc
Confidence 78999999999999888763 2 35544543
No 288
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.63 E-value=52 Score=31.35 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.0
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r 108 (269)
.||+|.|. |.||..++..|..+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC
Confidence 38999996 99999999888754
No 289
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=46.42 E-value=23 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+|+|.|.|.+|+.+++.|...
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC
Confidence 5799999999999999998764
No 290
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=46.18 E-value=46 Score=31.08 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=22.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
-+|.|.|.|.||..+++++..+ .. +++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR---GASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4799999999999988877654 24 566664
No 291
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=45.72 E-value=97 Score=29.02 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=21.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaI 118 (269)
-+|.|+|-|.||...++++-.+ .. +++++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~---G~~~vi~~ 217 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA---GASRIIGI 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEE
Confidence 4799999999999988877654 24 46555
No 292
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=45.54 E-value=93 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=22.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaIn 119 (269)
-+|.|+|.|.||..+++++..+ ..+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA---GASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4799999999999988876644 243 66663
No 293
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=45.23 E-value=32 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=25.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|||-|.| .|.||+.+.+.+.++ .+++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEeCc
Confidence 5899999 999999999988764 368888843
No 294
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=45.15 E-value=26 Score=33.77 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=23.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|||.+.|.|.|||-++-.++.+.+ .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 489999999999977655555543 5777775
No 295
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=45.04 E-value=32 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.589 Sum_probs=27.2
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+||.|-| .|-||+.|++.|.++. .+|+++..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 457899999 9999999999999863 57777753
No 296
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=44.77 E-value=35 Score=31.79 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.1
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||+|.|.|.+|+.++..|..+.- .-+++.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 79999999999999998886531 11455454
No 297
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=44.68 E-value=9.8 Score=34.75 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.7
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
||.|+|.|-+|-.+++.|...
T Consensus 1 kVlvvG~GGlG~eilk~La~~ 21 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM 21 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999998754
No 298
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.63 E-value=39 Score=32.13 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eeeEEEEcC-ChHHHHHHHHHHhC
Q 024349 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGf-GrIGR~llR~l~~r 108 (269)
|.||+|.|. |.||..+++.|..+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC
Confidence 579999995 99999999988864
No 299
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.49 E-value=33 Score=33.12 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=27.9
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
++||||.|. ++|+..++++.+.. .++++++|-|.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~ 36 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ 36 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC
Confidence 479999999 68999999887542 25899999987
No 300
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=44.34 E-value=67 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|.|.|.+||.+++.|.+.. .++..++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999988652 36655554
No 301
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=43.79 E-value=35 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 9999999999999763 57777743
No 302
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=43.79 E-value=80 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
-+|.|+|.|.+|..+++++..+ .. .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA---GASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEe
Confidence 4799999999999988876654 24 465554
No 303
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=43.65 E-value=74 Score=29.80 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|.|+|.|.||..+++++-.+. .+++++... .+....+++ .+|. +..++ ....-.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~~~i~-------~~~~~~~----- 238 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---DDYLV-------SSDAAEM----- 238 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---cEEec-------CCChHHH-----
Confidence 46889999999999888776542 466655432 122211221 1221 10000 0000001
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCcc-ccCCCCCceEEcCChhHHhH
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCL 245 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~-~~~~~~~~IISnaSCTTn~L 245 (269)
.... .++|+||||+|.-...+.+-..++.|.+-|++..+.. ..+ ++.. .+... ..+.....++..-+
T Consensus 239 -~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~i~g~~~~~~~~~ 306 (357)
T PLN02514 239 -QEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PLQ-----FVTPMLMLGR-KVITGSFIGSMKET 306 (357)
T ss_pred -HHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CCc-----ccHHHHhhCC-cEEEEEecCCHHHH
Confidence 0111 2689999999964455555667777664444443321 111 2222 12222 45665555554455
Q ss_pred HHHHHHHhhh
Q 024349 246 APFVKVMDEE 255 (269)
Q Consensus 246 aPvlkvL~d~ 255 (269)
.-++..+.+.
T Consensus 307 ~~~~~~~~~g 316 (357)
T PLN02514 307 EEMLEFCKEK 316 (357)
T ss_pred HHHHHHHHhC
Confidence 5666655543
No 304
>PRK06988 putative formyltransferase; Provisional
Probab=43.39 E-value=34 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
|++||++.|.+.+|...|+.|+++. +++++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 3479999999999999999998752 455444
No 305
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=43.30 E-value=39 Score=27.63 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=50.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
.+|.|.|.|-+||.++..|..+... +|..+|.. .+++..|.+ . | ++..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt--~~ra~~l~~---~---~--------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAK--EITIVNRT--PERAEALAE---E---F--------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESS--HHHHHHHHH---H---H--------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECC--HHHHHHHHH---H---c--------------CccccceeeHHH
Confidence 5899999999999999999886321 46666653 333322221 0 0 111223332222
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCC--EEEEe
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK--KVIIT 207 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGak--kVIIS 207 (269)
..+. ....|+||-||+.-... --..+++.+-+ ++++.
T Consensus 69 ~~~~---~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~D 107 (135)
T PF01488_consen 69 LEEA---LQEADIVINATPSGMPI-ITEEMLKKASKKLRLVID 107 (135)
T ss_dssp HCHH---HHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEE
T ss_pred HHHH---HhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceec
Confidence 2211 13689999999876442 22345554433 46764
No 306
>PRK05442 malate dehydrogenase; Provisional
Probab=43.30 E-value=55 Score=31.30 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=19.8
Q ss_pred ceeeEEEEcC-ChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGf-GrIGR~llR~l~~r 108 (269)
.+.||+|.|. |.||..++-.|..+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh
Confidence 4579999996 99999988777654
No 307
>PRK07877 hypothetical protein; Provisional
Probab=43.05 E-value=13 Score=39.48 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=54.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCC-CCceEEEEcCC-----CCcccccccccccccccccCceEEEecCCeEEECC-EE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KL 158 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~-~~l~iVaInd~-----~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inG-k~ 158 (269)
.-+|+|.|.| +|-.++..|....- +.+. +-|. .+++.. ++. .+.-|+.+-.+- +..-..+|- -.
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~---lvD~D~ve~sNLnRq--~~~-~~diG~~Kv~~a--~~~l~~inp~i~ 177 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELR---LADFDTLELSNLNRV--PAG-VFDLGVNKAVVA--ARRIAELDPYLP 177 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEE---EEcCCEEcccccccc--cCC-hhhcccHHHHHH--HHHHHHHCCCCE
Confidence 4689999999 99999988764321 2333 2232 233332 111 122344322211 111122442 24
Q ss_pred EEEEecC-CCCCCCCCCCCccEEEEcCCCCCChhhHHHH-HHcCCC
Q 024349 159 IKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH-IQAGAK 202 (269)
Q Consensus 159 I~V~~~~-~P~~i~w~~~gvDiVve~TG~f~~~e~a~~H-l~aGak 202 (269)
|..+.+. ++++++=--.++|+||||+..|-++-.+... .+.|..
T Consensus 178 v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 178 VEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 4454432 3333320013789999999998776554433 334553
No 308
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=43.03 E-value=37 Score=34.20 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||+|+|.|.+|-.++-+|.++ +...+++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~-g~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK-CPDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCeEEEEE
Confidence 5899999999999888877754 2346787774
No 309
>PRK08219 short chain dehydrogenase; Provisional
Probab=43.02 E-value=36 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.++.|.| .|.||+.+++.|.++ .+++++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~ 33 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT----HTLLLGG 33 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh----CCEEEEe
Confidence 4789999 999999999998875 2555554
No 310
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=42.89 E-value=1.7e+02 Score=26.49 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=21.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaIn 119 (269)
.+|.|+|-|.+|..+++++..+ ..+ ++++.
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~---g~~~v~~~~ 197 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS---GARKVIVSD 197 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEEC
Confidence 4789999999999998876654 245 55553
No 311
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=42.76 E-value=38 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 3799999 9999999999998753 5777664
No 312
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=42.37 E-value=38 Score=31.53 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.2
Q ss_pred eeEEEEcCChHHHHHHHHHHh
Q 024349 87 LKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~ 107 (269)
+||+|.|.|.||-.+.-.|.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~ 23 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 589999999999988877764
No 313
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=42.04 E-value=39 Score=32.14 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.4
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEE
Confidence 46899999 8999999999998753 5776664
No 314
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.89 E-value=41 Score=30.82 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=22.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.||+|.|.|.+|..++..+... + .+|+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G--~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-G--FDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-C--CeEEEE
Confidence 4799999999999999988754 2 455444
No 315
>PLN02827 Alcohol dehydrogenase-like
Probab=41.69 E-value=91 Score=29.59 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|.|.||..+++++..+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~ 216 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR 216 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988876654
No 316
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.47 E-value=41 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=23.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||||+|.|.+|+.++..+... .++++..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d 35 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVLVFE 35 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEEEEE
Confidence 3899999999999999887653 36765554
No 317
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=41.46 E-value=52 Score=27.95 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|+|-|++|...++.|++.. -+++.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 58999999999999999988753 3666664
No 318
>PLN02206 UDP-glucuronate decarboxylase
Probab=41.45 E-value=38 Score=33.49 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=25.9
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+||.|-| .|-||+.|++.|.++. .+|+++.
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld 150 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVD 150 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEe
Confidence 46899999 9999999999998863 5777764
No 319
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=41.09 E-value=95 Score=28.60 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|-|.+|..+++++...
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~ 183 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL 183 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877654
No 320
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=40.74 E-value=85 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
-+|.|+|.|.+|+.+++.+... .. .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA---GASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEEC
Confidence 4799999999999998887754 24 555553
No 321
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=40.72 E-value=41 Score=32.41 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.8
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.++|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 35899999 9999999999998763 4665554
No 322
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=40.65 E-value=2.8e+02 Score=28.62 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=40.6
Q ss_pred cccCCCCHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 53 TGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
...++.++.-|+..-+.+. +. ... -+-.||.|-|||-+|.-..+.|.+... .+|+|.|.
T Consensus 225 ~~ATG~GV~~y~e~~~~~~-~~-~~~-----~kgkr~~i~G~Gnv~~~aa~~l~~~G~---kvvavsD~ 283 (514)
T KOG2250|consen 225 YEATGRGVVYYVEAILNDA-NG-KKG-----IKGKRVVIQGFGNVGGHAAKKLSEKGA---KVVAVSDS 283 (514)
T ss_pred ccccchhHHHHHHHHHHhc-cC-CCC-----cCceEEEEeCCCchHHHHHHHHHhcCC---EEEEEEcC
Confidence 3356677888888877665 21 011 134689999999999998888886532 66777664
No 323
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=40.57 E-value=91 Score=27.62 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=23.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaInd 120 (269)
.+|.|+|.|.+|..+++++... ..+ ++++..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~---g~~~v~~~~~ 162 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA---GARRVIAIDR 162 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC
Confidence 4689999999999998887654 245 666543
No 324
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=40.32 E-value=30 Score=32.75 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=23.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
++++.+|+||.|.++.+.+..+. -++|+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~y 29 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGY 29 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEE
Confidence 47899999999999999888653 466665
No 325
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=40.28 E-value=1e+02 Score=27.76 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=22.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|.|-|-+|+.+++++..+ ..+++++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~---G~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM---GFETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 4789999888999988877654 256666643
No 326
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.24 E-value=44 Score=31.95 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=23.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.||+|+|.|.+|+.++..+... .++|+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~ 36 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAW 36 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEE
Confidence 4799999999999999887753 3676544
No 327
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=40.15 E-value=1.2e+02 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaIn 119 (269)
.+|.|.|.|.+|+.+++++... .. .++++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA---GARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc
Confidence 4789999999999988877654 25 566564
No 328
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.07 E-value=1e+02 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=22.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaIn 119 (269)
-+|.|+|.|.+|+.+++.+..+. .+ ++++.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~ 129 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVD 129 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEC
Confidence 46899999999999888776542 45 66664
No 329
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.92 E-value=70 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.2
Q ss_pred eEEEEcCChHHHHHHHHHHhC
Q 024349 88 KVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r 108 (269)
||+|+|-|.||-.++..|.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~ 21 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL 21 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHh
Confidence 689999999999999999875
No 330
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=39.57 E-value=34 Score=27.67 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=50.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC-CCcccccccccccc-cccccCceEEEecCCeEEEC-CEEEEEEe
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDS-LLGTFKADVKIVDNETISVD-GKLIKVVS 163 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~-~~~~~~a~LlkyDS-~hG~f~g~v~~~~~~~L~in-Gk~I~V~~ 163 (269)
.||.|.|.|.+|-.+++.|....-. ++.-+.+- .+++.+..-+-|.+ .-|+...+.- .+.-..+| +-.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~--~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA--KERLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH--HHHHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeecccccccccccccchhHHHHHH--HHHHHHhcCceeeeeee
Confidence 4899999999999999988753211 33334332 23333333111211 2244322211 11101122 23344443
Q ss_pred cCC-CCCC-CCCCCCccEEEEcCCCCCChhhHHHHHH
Q 024349 164 NRD-PLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQ 198 (269)
Q Consensus 164 ~~~-P~~i-~w~~~gvDiVve~TG~f~~~e~a~~Hl~ 198 (269)
.+- ++++ .+- .+.|+||+|+..+..+..+.....
T Consensus 79 ~~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~ 114 (135)
T PF00899_consen 79 EKIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICR 114 (135)
T ss_dssp SHCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHH
T ss_pred cccccccccccc-cCCCEEEEecCCHHHHHHHHHHHH
Confidence 221 1111 111 278999999988766655554443
No 331
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=38.26 E-value=30 Score=34.34 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r 108 (269)
.+.+|||.|||-.|+.++.-+...
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a 74 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA 74 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc
Confidence 357899999999999999988754
No 332
>PLN00106 malate dehydrogenase
Probab=38.22 E-value=43 Score=32.01 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.3
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r 108 (269)
.||+|.|. |+||..++..|..+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~ 41 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN 41 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 58999997 99999999988754
No 333
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=38.20 E-value=13 Score=29.15 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=39.8
Q ss_pred CCccEEEEcCCCCCChhhHHHHHHcCCCEEEEecCCCCCCCCeEEeecCcc-ccCCCCCceEEcCChhHHhHHHHHHHH
Q 024349 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEK-DYDHEVANIVSNASCTTNCLAPFVKVM 252 (269)
Q Consensus 175 ~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~Dip~iV~GVN~~-~~~~~~~~IISnaSCTTn~LaPvlkvL 252 (269)
.++|+||||+|.--..+.+-..++.|.+-|++..+. +.. + .+|.. .+..+ ..++..-.++..-.--+++.|
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~-~~~---~--~~~~~~~~~~~-~~i~g~~~~~~~~~~~~~~~l 128 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG-GDP---I--SFNLMNLMFKE-ITIRGSWGGSPEDFQEALQLL 128 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS-TSE---E--EEEHHHHHHTT-EEEEEESSGGHHHHHHHHHHH
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC-CCC---C--CCCHHHHHhCC-cEEEEEccCCHHHHHHHHHHh
Confidence 489999999996545555556666666555665544 111 1 12222 22223 567777777655444444433
No 334
>PRK14852 hypothetical protein; Provisional
Probab=38.00 E-value=38 Score=37.42 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHh
Q 024349 86 KLKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~ 107 (269)
.-||+|+|.|-+|-.++..|..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAr 353 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLAR 353 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHH
Confidence 4689999999999999988864
No 335
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.98 E-value=32 Score=32.22 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||+|+|.|.+|..++..|..+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 336
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=37.97 E-value=64 Score=27.34 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=23.2
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
|-|.| +|-||+.+++.|.++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 57889 9999999999999864 355555443
No 337
>PRK07411 hypothetical protein; Validated
Probab=37.65 E-value=16 Score=35.59 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
.-+|.|+|.|-+|-.++..|..-
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~ 60 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA 60 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc
Confidence 35899999999999999988753
No 338
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=36.99 E-value=47 Score=34.61 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|+|.+|+.+++.|..+. ...+|++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G-~~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERG-LAREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 57999999999999999987642 123555554
No 339
>PRK07326 short chain dehydrogenase; Provisional
Probab=36.93 E-value=57 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=23.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEee
Confidence 5789999 8999999999998752 4666654
No 340
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=36.53 E-value=51 Score=29.24 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=23.7
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|-| +|-||+.+++.|.++. ...+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 478899 9999999999888652 235776664
No 341
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=36.37 E-value=43 Score=32.80 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCc-eEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l-~iVaInd 120 (269)
.+|+|.|.|.||+.+++.|..+. . +++.++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999987642 3 4555544
No 342
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=36.14 E-value=55 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.8
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||.|.| .|.||+.+++.|.++. .+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeC
Confidence 578999 8999999999998752 4666553
No 343
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=36.12 E-value=61 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG---YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999 9999999999998763 5776653
No 344
>PRK08017 oxidoreductase; Provisional
Probab=36.09 E-value=62 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=22.9
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g---~~v~~~~ 33 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRG---YRVLAAC 33 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 689999 6999999999998653 4665554
No 345
>PRK14851 hypothetical protein; Provisional
Probab=35.87 E-value=15 Score=38.71 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=48.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC--CCcccccc-cccccccccccCceEEEecCCeEEEC-CEEEEE
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH-LLKYDSLLGTFKADVKIVDNETISVD-GKLIKV 161 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~--~~~~~~a~-LlkyDS~hG~f~g~v~~~~~~~L~in-Gk~I~V 161 (269)
..+|+|.|.|-+|-.++..|..-.-+++. |-|. .++..+-. ++-..+.-|+..-++- .+.-..+| +-.|.+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~---LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~ 117 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFH---IADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITP 117 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEE---EEcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEE
Confidence 35899999999999999988643222232 3332 22222221 1111223354432221 11112244 234555
Q ss_pred EecC-CCCCCCCCCCCccEEEEcCCCC
Q 024349 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (269)
Q Consensus 162 ~~~~-~P~~i~w~~~gvDiVve~TG~f 187 (269)
+.+. ++++++-=-.++|+||||+..|
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCC
Confidence 5433 3333321013799999999865
No 346
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=35.81 E-value=28 Score=34.92 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred ceeeEEEEcC-ChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGf-GrIGR~llR~l~~r 108 (269)
.++||+|.|. |.||-.++-.|..+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc
Confidence 4699999997 99999999888765
No 347
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=35.76 E-value=1.5e+02 Score=28.61 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=22.1
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
-+|.|.|.|.||..+++++..+. .+++.+.+.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 46888999999999888776542 454444443
No 348
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=35.63 E-value=1.4e+02 Score=27.89 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 175 ~gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
.++|+|+||+|.-...+.+.++++.+.+-|.+
T Consensus 253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCCcEEEECCCCcHHHHHHHHHhccCCEEEEe
Confidence 48999999998644445667777776643333
No 349
>PRK04148 hypothetical protein; Provisional
Probab=35.58 E-value=61 Score=27.36 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||.++|.| -|..+++.|.+. ..+|++|.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~---G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES---GFDVIVID 46 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC---CCEEEEEE
Confidence 479999999 787788888764 36888884
No 350
>PRK09291 short chain dehydrogenase; Provisional
Probab=35.57 E-value=64 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 3688999 9999999999998753 4665553
No 351
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=35.29 E-value=21 Score=34.74 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.+|.|.|.|-+|..++..|...
T Consensus 42 ~~VliiG~GglG~~v~~~La~~ 63 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA 63 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999998754
No 352
>PRK08223 hypothetical protein; Validated
Probab=35.24 E-value=40 Score=31.96 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.7
Q ss_pred eeEEEEcCChHHHHHHHHHHh
Q 024349 87 LKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~ 107 (269)
-+|.|+|.|-+|-.++..|..
T Consensus 28 s~VlIvG~GGLGs~va~~LA~ 48 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLAR 48 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 579999999999999998864
No 353
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=35.23 E-value=1.4e+02 Score=27.99 Aligned_cols=30 Identities=17% Similarity=-0.011 Sum_probs=22.3
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-+|.|+|- |.||..+++++-.+ ..+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH---GCYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEc
Confidence 47999995 99999988877654 25666653
No 354
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=34.91 E-value=1.7e+02 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|.|.+|..+++++...
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~ 184 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999888876643
No 355
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=34.88 E-value=58 Score=33.47 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.4
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+++||.|-| .|.||+.+++.|.++. ...+|+++..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 346899999 9999999999998752 2467777753
No 356
>PLN02240 UDP-glucose 4-epimerase
Probab=34.79 E-value=66 Score=29.50 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 6 ~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (352)
T PLN02240 6 RTILVTGGAGYIGSHTVLQLLLAG---YKVVVID 36 (352)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 9999999999998753 5777764
No 357
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.76 E-value=1.3e+02 Score=28.14 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.1
Q ss_pred eeEEEEcCCh-HHHHHHHHHHhC
Q 024349 87 LKVAINGFGR-IGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGr-IGR~llR~l~~r 108 (269)
.+|.|.|.|. +||.++..|.++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ 182 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA 182 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC
Confidence 4788888776 888888877654
No 358
>PRK07023 short chain dehydrogenase; Provisional
Probab=34.36 E-value=62 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
++|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEE
Confidence 4799999 9999999999988752 455444
No 359
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=34.01 E-value=53 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.9
Q ss_pred eeEEEEcCChHHHH---HHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~---llR~l~~r~~~~l~iVaInd~ 121 (269)
|||.-.|.|+++|- ++..++++...+..+++|+..
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~ 38 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPR 38 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEec
Confidence 58999999999999 777677665556788888764
No 360
>PLN02583 cinnamoyl-CoA reductase
Probab=33.86 E-value=70 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=23.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~ 36 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG---YTVHAA 36 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEE
Confidence 3689999 9999999999998753 466654
No 361
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=33.73 E-value=59 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.9
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 689999 8999999999998753 46666643
No 362
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=33.72 E-value=46 Score=34.21 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred ceeeEEEEc-CChHHHHHHHHHHhC
Q 024349 85 AKLKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInG-fGrIGR~llR~l~~r 108 (269)
+.+||-|-| .|.||+.|.+.|.++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~ 403 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQ 403 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhC
Confidence 457999999 999999999998765
No 363
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.66 E-value=63 Score=28.71 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=24.5
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|-|-| .|-||+.|++.|.++ ..+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~---g~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA---GHDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC---CCeEEEEeC
Confidence 488999 899999999999976 357777764
No 364
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=33.19 E-value=1.9e+02 Score=27.64 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=23.0
Q ss_pred CCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 175 ~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
.++|+|||++|.-...+.+-.+++.+-..+++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999865555556677765544455544
No 365
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=33.14 E-value=1.5e+02 Score=26.36 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.|.|+| .|.+|..+++++..+. .+++++.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~ 178 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALT 178 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 699999 5999999888776542 4554443
No 366
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.46 E-value=58 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.240 Sum_probs=24.3
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
++.+|+|+|.|..|-..+|+|.+.. +++++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g---~~v~vf 35 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG---HEVVVF 35 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC---CCceEE
Confidence 4578999999999999999998652 444444
No 367
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=32.39 E-value=1.8e+02 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=22.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-+|.|+| .|.+|..+++++..+ ..+++++.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK---GCYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEe
Confidence 4799999 599999998877654 25665543
No 368
>PLN02214 cinnamoyl-CoA reductase
Probab=32.36 E-value=80 Score=29.49 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=23.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 41 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERG---YTVKGTV 41 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc---CEEEEEe
Confidence 5799999 8999999999998763 4665553
No 369
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=31.86 E-value=1.2e+02 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|-|.+|..+++++..+
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988876654
No 370
>PRK05086 malate dehydrogenase; Provisional
Probab=31.34 E-value=82 Score=29.75 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.7
Q ss_pred eeEEEEcC-ChHHHHHHHHHHh
Q 024349 87 LKVAINGF-GRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~ 107 (269)
+||+|.|- |+||+.++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 48999995 9999999987743
No 371
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.26 E-value=58 Score=31.84 Aligned_cols=21 Identities=14% Similarity=0.586 Sum_probs=19.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
++|.|.|+|+.|+.++|.|. +
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~ 21 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K 21 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C
Confidence 47999999999999999988 5
No 372
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=31.24 E-value=82 Score=26.18 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.5
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
++.|+|.|..|+.+++.|.++ .++++++=|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEcC
Confidence 478999999999999988643 4788777654
No 373
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.21 E-value=84 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG---FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3578889 9999999999998763 4666664
No 374
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.17 E-value=80 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.4
Q ss_pred EEEEcCChHHHHHHHHHHhC
Q 024349 89 VAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 89 VaInGfGrIGR~llR~l~~r 108 (269)
|+|.|.|.||..++-.|..+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~ 20 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK 20 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc
Confidence 58999999999999877765
No 375
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.04 E-value=67 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~ 34 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKAT 34 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998763 466544
No 376
>PRK10083 putative oxidoreductase; Provisional
Probab=30.90 E-value=1.3e+02 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.0
Q ss_pred eeEEEEcCChHHHHHHHHHH
Q 024349 87 LKVAINGFGRIGRNFLRCWH 106 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~ 106 (269)
-+|.|+|-|.+|..+++.+.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~ 181 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLK 181 (339)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 47999999999999887665
No 377
>PTZ00325 malate dehydrogenase; Provisional
Probab=30.85 E-value=51 Score=31.50 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCccEEEEcCCCCCCh-----hhHH-----------HHHHcCCCEEEE--ecCCCCCCCCeEEee---cCccccCCCCCc
Q 024349 175 LGIDIVIEGTGVFVDG-----PGAG-----------KHIQAGAKKVII--TAPAKGADIPTYVVG---VNEKDYDHEVAN 233 (269)
Q Consensus 175 ~gvDiVve~TG~f~~~-----e~a~-----------~Hl~aGakkVII--SAP~k~~Dip~iV~G---VN~~~~~~~~~~ 233 (269)
.|.|+||-+.|.-+.. +-+. .-.+.|.+++|+ |.|. |+=+.+.. -....+.+ ++
T Consensus 75 ~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv---dv~~~~~~~~~~~~sg~p~--~~ 149 (321)
T PTZ00325 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV---NSTVPIAAETLKKAGVYDP--RK 149 (321)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHhhhhhccCCCh--hh
Confidence 3899999999985541 1111 222357777765 5553 22111111 01122333 57
Q ss_pred eEEcCChhHHhHHHHHHHHhhhcCceE
Q 024349 234 IVSNASCTTNCLAPFVKVMDEELGKQS 260 (269)
Q Consensus 234 IISnaSCTTn~LaPvlkvL~d~fGI~~ 260 (269)
++... +-=-+.+-..|-+++|+.-
T Consensus 150 viG~g---~LDs~R~r~~la~~l~v~~ 173 (321)
T PTZ00325 150 LFGVT---TLDVVRARKFVAEALGMNP 173 (321)
T ss_pred eeech---hHHHHHHHHHHHHHhCcCh
Confidence 88773 3667888888999998873
No 378
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=30.83 E-value=78 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=24.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|.|-|..||.+++.+... .++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l---G~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL---GYKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEeC
Confidence 4799999999999999887764 367766643
No 379
>PLN00198 anthocyanidin reductase; Provisional
Probab=30.81 E-value=73 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=23.7
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 35799999 9999999999998753 465443
No 380
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.79 E-value=87 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 4799999 9999999999998763 35555543
No 381
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=30.76 E-value=1.4e+02 Score=27.35 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=50.4
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
-+|.|.|-|.+|..+.+++..+. .+++++... .+....+-+ +|. .-+++.+.-.+. +.
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~-----------~~~i~~~~~~~~--~~ 222 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARK----LGA-----------HHYIDTSKEDVA--EA 222 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHH----cCC-----------cEEecCCCccHH--HH
Confidence 36999999999999888877642 466666432 222222211 111 011221110000 00
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEe
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIIS 207 (269)
. ..| .++|+++|++|.-...+.+-+++..|..-|.+.
T Consensus 223 ~--~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 L--QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 0 113 268999999875445555667777665334443
No 382
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=30.47 E-value=3e+02 Score=24.96 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
++|++++|+|.....+...++++.+.+-+.+
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 231 DFDVVFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CccEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 6899999998644455667788876533334
No 383
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=30.23 E-value=40 Score=29.60 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.0
Q ss_pred eeEEEEcCChHHHHHHHHHHh
Q 024349 87 LKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~ 107 (269)
-+|.|.|.|-+|-.+++.|..
T Consensus 20 s~VlviG~gglGsevak~L~~ 40 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVL 40 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHH
Confidence 579999999999999998874
No 384
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=30.06 E-value=2.1e+02 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=22.2
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-+|.|+| -|.||..+++++-.+ ..+++++.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~ 170 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAA 170 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc---CCEEEEEe
Confidence 4799999 799999988877654 24666554
No 385
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=30.04 E-value=87 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.8
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 688999 8999999999988652 4665553
No 386
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.01 E-value=50 Score=32.30 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.4
Q ss_pred CccEEEEcCCCCCChhhHHHHHHc-CCCEEEEec
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITA 208 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~a-GakkVIISA 208 (269)
..|++|||||...+.+.+-..++. |. +++-.
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt--~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT--VVLVG 273 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE--EEEec
Confidence 489999999999999888888876 44 55533
No 387
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=29.80 E-value=2e+02 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=23.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|+|.|.+|+.+++.+... .++++++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~---G~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL---GARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEeC
Confidence 4799999999999998877654 357666643
No 388
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=29.45 E-value=73 Score=29.37 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r 108 (269)
.+|.|-| .|-||+.+++.|.++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~ 24 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINE 24 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHc
Confidence 4789999 999999999999876
No 389
>PRK06046 alanine dehydrogenase; Validated
Probab=29.20 E-value=89 Score=29.51 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=27.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
..+|+|.|.|.+|+..++.+... .+++.|.|-+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 45899999999999999988743 35777777766
No 390
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=29.05 E-value=83 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
||.|.| .|-||+.+++.|.++. .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998753 4665553
No 391
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=28.93 E-value=4e+02 Score=23.42 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=49.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
..|.|.| .|.+|+.+++.+.... .+++++... .+....+.+ +|. + ......+
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVGS--PARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 4689999 5999999888776542 466555332 222222211 111 0 0101100
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
++...++|+++|++|.- ..+.+-++++.+..-|.+..
T Consensus 187 -----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 187 -----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVGS 223 (305)
T ss_pred -----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEec
Confidence 11223799999999964 45666778887664444443
No 392
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=28.82 E-value=31 Score=24.18 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.2
Q ss_pred ccccccCcccccccccccc
Q 024349 36 DVAEFAGLRANAGATYATG 54 (269)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~ 54 (269)
-++-|.|||+..+++..++
T Consensus 23 mVAPFtGLKS~a~fPvtrK 41 (45)
T PF12338_consen 23 MVAPFTGLKSTAAFPVTRK 41 (45)
T ss_pred eeeccccccccccCccccc
Confidence 5789999999998777443
No 393
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.77 E-value=59 Score=30.93 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.0
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r 108 (269)
+||+|.|. |.||..++-.|..+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~ 23 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN 23 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 48999997 99999999887754
No 394
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.63 E-value=57 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||+|.|.|.+|..+...|.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC
Confidence 3799999999999999988754
No 395
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=28.59 E-value=1.3e+02 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=18.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|.|.+|+.+++++..+
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~ 182 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLN 182 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988877654
No 396
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=28.53 E-value=2.9e+02 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=22.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCce-EEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~-iVaIn 119 (269)
-+|.|+|.|.+|+.+++++..+. .. ++++.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 36889999999999988886542 45 55553
No 397
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.52 E-value=2.1e+02 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=18.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-+|.|+|.|.||..+++++..+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~ 189 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR 189 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877544
No 398
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=28.49 E-value=79 Score=28.87 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r 108 (269)
+||-|-| .|-||+.+.+.|.++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~ 23 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL 23 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc
Confidence 3799999 899999999998865
No 399
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=28.28 E-value=1.9e+02 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=22.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-.|.|+| .|.+|..+++++.... .+++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4789999 7999999888776542 4666664
No 400
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=28.15 E-value=92 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|-| .|.||+.+++.|.++. .+|+++.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~ 37 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVD 37 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999 9999999999998763 4666654
No 401
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=27.91 E-value=89 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.1
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688889 9999999999998763 57776643
No 402
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=27.90 E-value=85 Score=31.82 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.||+|+|.|..|+-++..+... .++++.++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA---GHQVLLYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC---CCeEEEEe
Confidence 4799999999999999988753 36766554
No 403
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=27.89 E-value=81 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||.|.|.|.||-.+.-.|...
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999999998877654
No 404
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=27.61 E-value=1e+02 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.0
Q ss_pred eeEEEEcCChH-HHHHHHHHHhC
Q 024349 87 LKVAINGFGRI-GRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrI-GR~llR~l~~r 108 (269)
.+|.|.|.|.+ |+.+++.|.++
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~ 67 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR 67 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC
Confidence 58999999985 99899988865
No 405
>PRK12320 hypothetical protein; Provisional
Probab=27.54 E-value=85 Score=33.41 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3799999 9999999999998753 57766653
No 406
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=27.54 E-value=97 Score=30.18 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=31.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCC----CCCceEEEEcCC----CCccccccccccc
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRK----DSPLDVVVVNDS----GGVKNASHLLKYD 134 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~----~~~l~iVaInd~----~~~~~~a~LlkyD 134 (269)
++++|||+|-|-||-.-+=++++.. .+..++-.+.|- ....-.|-|++-|
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~ 59 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPD 59 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecc
Confidence 4579999999999987776666532 234566667663 2223344555533
No 407
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=27.39 E-value=1.6e+02 Score=26.38 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=50.1
Q ss_pred eeEEEEcC-ChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecC
Q 024349 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (269)
Q Consensus 87 ikVaInGf-GrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~ 165 (269)
.+|.|+|- |.+|..+++++..+. .+++++... .+....+.+ +|. + -+++.+... .+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~--------~v~~~~~~~---~~ 204 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKK----LGA---K--------EVIPREELQ---EE 204 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHH----cCC---C--------EEEcchhHH---HH
Confidence 47999994 999999988876552 566666432 122222211 111 0 011111100 00
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCCCEEEEec
Q 024349 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (269)
Q Consensus 166 ~P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGakkVIISA 208 (269)
.-. .+...++|+|+||+|. ...+.+-.++..+..-+.+..
T Consensus 205 ~~~--~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 205 SIK--PLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred HHH--hhccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 000 1123478999999997 455566677776553344443
No 408
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=27.37 E-value=2e+02 Score=28.72 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P 167 (269)
+|+|+|.|..|-.++..|..... ++..+......+....+.. .+..+.++.....+.....-
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~---~V~l~~r~~~~~~~~~~~~---------------~~~~v~~~~~I~~~~~~g~V 267 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAK---EVHIASRASESDTYEKLPV---------------PQNNLWMHSEIDTAHEDGSI 267 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCC---eEEEEEeeccccccccCcC---------------CCCceEECCcccceecCCeE
Q ss_pred CCCCCCCCCccEEEEcCC
Q 024349 168 LQLPWAELGIDIVIEGTG 185 (269)
Q Consensus 168 ~~i~w~~~gvDiVve~TG 185 (269)
.--|=+...+|.||.|||
T Consensus 268 ~f~DG~~~~~D~Ii~~TG 285 (461)
T PLN02172 268 VFKNGKVVYADTIVHCTG 285 (461)
T ss_pred EECCCCCccCCEEEECCc
No 409
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=27.25 E-value=89 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.0
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|+|.|.+|+-+++.+... .++++..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a---G~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA---GHTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEEe
Confidence 4799999999999999988753 36766554
No 410
>PRK07454 short chain dehydrogenase; Provisional
Probab=27.23 E-value=1.1e+02 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=23.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.++.|.| .|.||+.+++.|.++. .+|+.+..
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 38 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG---WDLALVAR 38 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 4688899 8999999999998753 46665543
No 411
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=26.93 E-value=75 Score=27.94 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|-|-| .|.||+.+++.|.++. .+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35677 9999999999998752 57766654
No 412
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=26.61 E-value=72 Score=32.09 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=23.1
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
+..+|+|+|+|-||-.++-.+..+ .++++++
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~---G~~ViG~ 38 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA---GFKVIGV 38 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc---CCceEeE
Confidence 337899999999998877665543 3577666
No 413
>PLN00203 glutamyl-tRNA reductase
Probab=26.50 E-value=67 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=24.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|.|.+|+.+++.|..+.. -+++++|.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nR 298 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNR 298 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeC
Confidence 579999999999999999986531 14555654
No 414
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=26.43 E-value=75 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.5
Q ss_pred ceeeEEEEcC-ChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGf-GrIGR~llR~l~~r 108 (269)
.|.||+|.|. |.||..++-.|..+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~ 26 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG 26 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC
Confidence 4689999996 99999998877755
No 415
>PTZ00357 methyltransferase; Provisional
Probab=26.34 E-value=1.7e+02 Score=32.00 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=23.5
Q ss_pred ceeeEEEEcCChHHHHHHHHHHh--CCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHG--RKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~--r~~~~l~iVaInd~ 121 (269)
..+.|.|.|-|| |-++-++|.. ..+-+++|.+|.+-
T Consensus 700 ~~vVImVVGAGR-GPLVdraLrAak~~gvkVrIyAVEKN 737 (1072)
T PTZ00357 700 RTLHLVLLGCGR-GPLIDECLHAVSALGVRLRIFAIEKN 737 (1072)
T ss_pred ceEEEEEEcCCc-cHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 346799999887 5555444431 22347899999874
No 416
>PLN02702 L-idonate 5-dehydrogenase
Probab=26.29 E-value=1e+02 Score=28.68 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
++|+||||+|.-...+.+.++++.+..-|++
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 6899999999644556667788876643333
No 417
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=26.28 E-value=93 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.6
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.++|.|-| .|-||+.+++.|.++. ..+|+++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 36899999 9999999999998642 368777754
No 418
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.21 E-value=1.1e+02 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 3789999 9999999999998763 4655554
No 419
>PRK08163 salicylate hydroxylase; Provisional
Probab=26.11 E-value=1e+02 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=22.7
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
++.+|.|+|-|..|-.++..|... .+++..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~---g~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ---GIKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC---CCcEEEE
Confidence 457899999999999888877543 2454444
No 420
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=26.08 E-value=97 Score=29.26 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=26.6
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+.+|.|+|-|.-|-.+++.|.++ +++.+|+.|..
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~-~~~~~Itvi~~ 35 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ-DAHIPITLITA 35 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh-CcCCCEEEEeC
Confidence 35899999999999999888654 35578877764
No 421
>PRK07236 hypothetical protein; Provisional
Probab=25.99 E-value=1.1e+02 Score=28.93 Aligned_cols=33 Identities=15% Similarity=-0.044 Sum_probs=24.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++.+|.|+|-|..|-.++..|..+ .++++.+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~---G~~v~v~E~ 37 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA---GWDVDVFER 37 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC---CCCEEEEec
Confidence 457899999999999888887653 255555543
No 422
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=25.63 E-value=1.1e+02 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=21.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|.|||.-|+..+..|-+. .++|+.-.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS---G~~V~Vgl 34 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS---GVNVIVGL 34 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC---C-EEEEEE
T ss_pred CEEEEECCChHHHHHHHHHHhC---CCCEEEEe
Confidence 4799999999999998888653 46765443
No 423
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.58 E-value=1.2e+02 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.9
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 688999 9999999999988753 4665553
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=25.53 E-value=92 Score=27.29 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||.|.|.|-+|..+++.|...
T Consensus 22 ~~VlviG~GglGs~ia~~La~~ 43 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA 43 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999999998754
No 425
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=25.52 E-value=70 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.3
Q ss_pred CccEEEEcCCCCCChhhHHHHHHcCCCEEE
Q 024349 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205 (269)
Q Consensus 176 gvDiVve~TG~f~~~e~a~~Hl~aGakkVI 205 (269)
++|+|++||+...-.+.+.+.|++|..-++
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGkhVl~ 66 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGKDLLI 66 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence 689999999999999999999999975444
No 426
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.34 E-value=17 Score=36.13 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r 108 (269)
.|.|++|+|-|-|+-.++-+|...
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gL 211 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGL 211 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhc
Confidence 467899999999998888777643
No 427
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.18 E-value=1.2e+02 Score=25.80 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=23.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 4789999 9999999999998763 4665553
No 428
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=25.02 E-value=2.8e+02 Score=27.05 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=46.5
Q ss_pred eEEEEcCChHHHH-HHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCC
Q 024349 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (269)
Q Consensus 88 kVaInGfGrIGR~-llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~ 166 (269)
+|-++|.|.+|.. ++|.|.++. .++. +.|....+....| + .. -|+++...+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~~~~~~~~~l-~----------------~~-------gi~~~~g~~ 52 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDIAENATTKRL-E----------------AL-------GIPIYIGHS 52 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECCCcchHHHHH-H----------------HC-------cCEEeCCCC
Confidence 4778999999997 999988753 4544 4443111111111 0 00 122222233
Q ss_pred CCCCCCCCCCccEEEEcCCCCCChhhHHHHHHcCC
Q 024349 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (269)
Q Consensus 167 P~~i~w~~~gvDiVve~TG~f~~~e~a~~Hl~aGa 201 (269)
++.++ ++|+||-+.|.-.+.+......+.|+
T Consensus 53 ~~~~~----~~d~vV~spgi~~~~p~~~~a~~~~i 83 (448)
T TIGR01082 53 AENLD----DADVVVVSAAIKDDNPEIVEAKERGI 83 (448)
T ss_pred HHHCC----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 44443 46888888888777666665555565
No 429
>PLN02858 fructose-bisphosphate aldolase
Probab=24.96 E-value=87 Score=35.86 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=25.5
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
..+||++|+|.+|..+++.|... .+++.+.|.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~---G~~V~v~dr 355 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS---NFSVCGYDV 355 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC---CCEEEEEeC
Confidence 36899999999999999998864 357666653
No 430
>PRK08177 short chain dehydrogenase; Provisional
Probab=24.83 E-value=1.2e+02 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.5
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 33 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG---WQVTATVR 33 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC---CEEEEEeC
Confidence 588999 9999999999998652 46665543
No 431
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=24.81 E-value=1.2e+02 Score=28.86 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.7
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
+.+|+|+|-|-+|-.++..|.++. +..+|..+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~-~g~~V~llE~ 35 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERY-PGARIAVLEK 35 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhC-CCCeEEEEeC
Confidence 468999999999999998887652 2356666644
No 432
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=24.78 E-value=69 Score=29.79 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.8
Q ss_pred EEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 181 IEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 181 ve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
|+-.|.-++.+.+...+++|+.+||+
T Consensus 78 vQvGGGIRs~~~v~~ll~~G~~rVii 103 (241)
T COG0106 78 VQVGGGIRSLEDVEALLDAGVARVII 103 (241)
T ss_pred EEeeCCcCCHHHHHHHHHCCCCEEEE
Confidence 45567788888888888888888887
No 433
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=24.64 E-value=74 Score=27.26 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.2
Q ss_pred eEEEEc-CChHHHHHHHHHHhC
Q 024349 88 KVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r 108 (269)
+|.|.| .|-||+.+++.|.++
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHh
Confidence 789999 999999999999875
No 434
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.59 E-value=1.3e+02 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|.|.| .|.||+.+++.+.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4789999 8999999999887652 566655
No 435
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=24.34 E-value=94 Score=30.18 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=25.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
.+|-|+|.|-+|+++++.|.++.. =++...|..
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~--~~i~v~nRt 207 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGY--SRITFCSRQ 207 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCC--CEEEEEcCC
Confidence 589999999999999999998631 145555543
No 436
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=24.28 E-value=70 Score=29.47 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r 108 (269)
+||.|-| .|-||+.+++.|.++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~ 23 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN 23 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh
Confidence 3789999 899999999999876
No 437
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.27 E-value=1.7e+02 Score=23.40 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=23.1
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.|.|.| .+.||+.++|.|.++. .-.++.+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g--~~~v~~~~r 33 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG--ARVVILTSR 33 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--TEEEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcC--ceEEEEeee
Confidence 478899 9999999999999872 235554543
No 438
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=24.20 E-value=1.3e+02 Score=25.98 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=22.7
Q ss_pred eeeEEEEc-CChHHHHHHHHHHhCCCCCceEEE
Q 024349 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVV 117 (269)
Q Consensus 86 ~ikVaInG-fGrIGR~llR~l~~r~~~~l~iVa 117 (269)
+.+|.|.| .|-||+.+++.|.++. .+++.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g---~~v~~ 31 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG---WSVGI 31 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC---CEEEE
Confidence 45799999 8999999999998753 45543
No 439
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=24.11 E-value=1.1e+02 Score=27.58 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 89 VaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
|-|-| .|-||+.+++.|.++. .+++++-
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~ 30 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVV 30 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEe
Confidence 56888 9999999999998752 4444443
No 440
>PRK09135 pteridine reductase; Provisional
Probab=24.04 E-value=1.3e+02 Score=25.55 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG---YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEc
Confidence 4689999 9999999999998753 5666654
No 441
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.86 E-value=81 Score=29.88 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.2
Q ss_pred eeeEEEEcCChHHHHHHHHHHhC
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r 108 (269)
++||+|.|.|.+|..++..|.+.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~ 29 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR 29 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999988754
No 442
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.81 E-value=1.3e+02 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=22.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|.|.| .|.||+.+++.|.++. .+++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G---~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG---ARLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC---CEEEEE
Confidence 3688999 9999999999998753 455555
No 443
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.78 E-value=1.4e+02 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.0
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.+|+.+++.|..+. .+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~ 59 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVG 59 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 5799999 7999999999887642 3555554
No 444
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.77 E-value=82 Score=26.66 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhC
Q 024349 87 LKVAING-FGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r 108 (269)
.+|.|.| .|-||+.+++.|.++
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~ 29 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARA 29 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC
Confidence 4799999 999999999998876
No 445
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=23.77 E-value=1.1e+02 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
+||+|+|.|.+|..++-++..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~ 23 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK 23 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc
Confidence 4899999999999999988765
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=23.71 E-value=1.3e+02 Score=26.23 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.0
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 689999 9999999999998753 4655553
No 447
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=23.47 E-value=1.4e+02 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.5
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g---~~vi~~ 32 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG---YRVIAT 32 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC---CEEEEE
Confidence 3678888 9999999999998652 465555
No 448
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=23.41 E-value=1.6e+02 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=25.6
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+..+|+|.|-|..||.+++.+.+. .++++++.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~l---G~~Vi~ld 52 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQM---GIKVKVLD 52 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 446899999999999999988764 36777764
No 449
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=23.41 E-value=3.4e+02 Score=28.81 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r 108 (269)
++.+|.|+|-|..|-.++-.|..+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc
Confidence 568999999999998888877653
No 450
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.37 E-value=1.3e+02 Score=26.00 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.7
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG---ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 9999999999998763 3555554
No 451
>PLN02650 dihydroflavonol-4-reductase
Probab=23.35 E-value=1.2e+02 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=23.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+|-|-| .|.||+.+++.|.++. .+|+++
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~ 35 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRAT 35 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998753 466544
No 452
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=23.31 E-value=1.2e+02 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=24.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.||+|+|-|-+|...++.|.++ ..+|+.+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~---g~~V~vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR---GYQVTVFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEeC
Confidence 3899999999999999888764 257666643
No 453
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=23.09 E-value=1.3e+02 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=24.3
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
++|+|+|-|-+|...+..|..+. .+|+.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g---~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG---HEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 38999999999999988877642 56666754
No 454
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=23.08 E-value=76 Score=26.53 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=28.3
Q ss_pred CCeEEECCEEEEEEecCCCCC---CCCCCCCccEEEEc-C--CCCCCh
Q 024349 149 NETISVDGKLIKVVSNRDPLQ---LPWAELGIDIVIEG-T--GVFVDG 190 (269)
Q Consensus 149 ~~~L~inGk~I~V~~~~~P~~---i~w~~~gvDiVve~-T--G~f~~~ 190 (269)
-+.|.++++..+.+.++++++ |||+ .||.|.-+ . |.|+.+
T Consensus 24 yGkimiGDkaFEFyn~~n~~dyIQIPW~--eI~~V~a~V~fkgk~I~R 69 (118)
T PF06115_consen 24 YGKIMIGDKAFEFYNDRNVEDYIQIPWE--EIDYVIASVSFKGKWIPR 69 (118)
T ss_pred cCeEEEcccceEeecCCChhhcEEeChh--heeEEEEEEEECCCEEee
Confidence 356778888888888877765 8998 68865432 2 666655
No 455
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=22.94 E-value=59 Score=33.19 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=12.6
Q ss_pred eeEEEEcCChHHHH
Q 024349 87 LKVAINGFGRIGRN 100 (269)
Q Consensus 87 ikVaInGfGrIGR~ 100 (269)
.+|+|+|+|.||+.
T Consensus 37 KtIaIIGyGSqG~A 50 (487)
T PRK05225 37 KKIVIVGCGAQGLN 50 (487)
T ss_pred CEEEEEccCHHHHH
Confidence 58999999999993
No 456
>PRK05884 short chain dehydrogenase; Provisional
Probab=22.74 E-value=1.3e+02 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.0
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEE
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
|+.|-| .|.||+.+++.|.++. .+++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g---~~v~~~ 30 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG---HKVTLV 30 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC---CEEEEE
Confidence 688999 8999999999998653 355544
No 457
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=22.56 E-value=1.3e+02 Score=25.00 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=24.6
Q ss_pred EEEcCChHHHHHHHHHHhCC--CCCceEEEEcC
Q 024349 90 AINGFGRIGRNFLRCWHGRK--DSPLDVVVVND 120 (269)
Q Consensus 90 aInGfGrIGR~llR~l~~r~--~~~l~iVaInd 120 (269)
||+|.|.-|-.++..|+.+. ...++|..+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~ 33 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDP 33 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence 69999999999998888763 35678777754
No 458
>PRK07074 short chain dehydrogenase; Provisional
Probab=22.47 E-value=1.5e+02 Score=25.79 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g---~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG---DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 588889 8999999999998753 4555553
No 459
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=22.38 E-value=1.3e+02 Score=28.44 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=22.4
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
..+|.|+|-|..|-.++..|..+ .++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~---G~~v~v~E 32 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA---GIDSVVLE 32 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc---CCCEEEEE
Confidence 46899999999999888776543 24555454
No 460
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.31 E-value=1.4e+02 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.8
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|-|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEe
Confidence 688999 8999999999998753 3655554
No 461
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=22.13 E-value=1.2e+02 Score=28.85 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|+|-|.-|..+++.|... ..+++|+.|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~-~~g~~Vllid 31 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADA-RPGLSVLLID 31 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhc-CCCCEEEEEc
Confidence 589999999999999988322 2457777773
No 462
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.97 E-value=1.3e+02 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=22.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|+|+|-|..|-.++..|..+ .++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~---G~~v~viE 32 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS---GLEVLLLD 32 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC---CCEEEEEc
Confidence 4799999999999888777532 36666554
No 463
>PRK12828 short chain dehydrogenase; Provisional
Probab=21.91 E-value=1.5e+02 Score=25.04 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=23.3
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|-| .|.||+.+++.+.++. .+++.+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G---~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG---ARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC---CeEEEEe
Confidence 3689999 9999999999988753 4555553
No 464
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.79 E-value=1.6e+02 Score=26.35 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=21.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|-|..|-.++..|..+ .++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~---G~~v~i~E~ 32 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA---GIDVTIIER 32 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT---TCEEEEEES
T ss_pred ceEEEECCCHHHHHHHHHHHhc---ccccccchh
Confidence 5899999999999988888754 256665644
No 465
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=21.70 E-value=1.3e+02 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKG---YEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC---CEEEEEe
Confidence 4799999 8999999999998763 5766653
No 466
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=21.55 E-value=1.1e+02 Score=25.45 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred eEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCCCCcccccccccccccccccCceEEEecCCeEEECCEEEEEEecCCC
Q 024349 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (269)
Q Consensus 88 kVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~~~~~~~a~LlkyDS~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P 167 (269)
||+|.|-|..|..++..|..+. .+|.--.. +.+....|-+.-. .-.|-..+. +.. .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g---~~V~l~~~--~~~~~~~i~~~~~-n~~~~~~~~--------l~~-~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG---HEVTLWGR--DEEQIEEINETRQ-NPKYLPGIK--------LPE-NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT---EEEEEETS--CHHHHHHHHHHTS-ETTTSTTSB--------EET-TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC---CEEEEEec--cHHHHHHHHHhCC-CCCCCCCcc--------cCc-ccccc--cCH
Confidence 7999999999999999888753 23322221 2222222221100 001100111 111 23342 454
Q ss_pred CCCCCCCCCccEEEEcCCCCCChhhHH---HHHHcCCCEEEEecC
Q 024349 168 LQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAP 209 (269)
Q Consensus 168 ~~i~w~~~gvDiVve~TG~f~~~e~a~---~Hl~aGakkVIISAP 209 (269)
++.- .+.|++|-++..+--++.+. .|++.+. +||+.+
T Consensus 64 ~~a~---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~~ 103 (157)
T PF01210_consen 64 EEAL---EDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISAT 103 (157)
T ss_dssp HHHH---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEETS
T ss_pred HHHh---CcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEec
Confidence 3321 36799999999887776555 4444555 666665
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.50 E-value=1.6e+02 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=23.9
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.++.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g---~~vi~~~ 37 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG---ASVVVAD 37 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999 8999999999998763 4666554
No 468
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.37 E-value=1.6e+02 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.4
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G---~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG---WRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 4689999 8999999999988753 4666554
No 469
>PRK06847 hypothetical protein; Provisional
Probab=21.37 E-value=1.4e+02 Score=27.60 Aligned_cols=31 Identities=26% Similarity=0.112 Sum_probs=23.1
Q ss_pred eeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 86 ~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+.+|+|+|-|..|-.++..|..+ .++++.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~---g~~v~v~E 34 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA---GIAVDLVE 34 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC---CCCEEEEe
Confidence 46899999999999888877643 25555553
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=21.26 E-value=1.5e+02 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=24.1
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG---AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC---CEEEEEe
Confidence 4799999 8999999999998753 4666553
No 471
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.25 E-value=1.1e+02 Score=27.55 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.0
Q ss_pred EEcCCCCCChhhHHHHHHcCCCEEEE
Q 024349 181 IEGTGVFVDGPGAGKHIQAGAKKVII 206 (269)
Q Consensus 181 ve~TG~f~~~e~a~~Hl~aGakkVII 206 (269)
|.-.|..++.|.+.+.+..||.||+|
T Consensus 79 i~vGGGIrs~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 79 IEVGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred EEEcCCcCCHHHHHHHHHCCCCEEEE
Confidence 44467788888888888889988887
No 472
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=21.24 E-value=1.6e+02 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=23.1
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g---~~vi~~~ 33 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEG---YRVAVAD 33 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 588889 8999999999998763 4666554
No 473
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.19 E-value=1.2e+02 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||.|+|.|.+|..++..|...
T Consensus 25 ~~VlVvG~GglGs~va~~La~a 46 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA 46 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999988754
No 474
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=21.13 E-value=2.9e+02 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.9
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|.|.|-+||.++..|.++. .+++.+|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G---~~V~i~nR 410 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKG---ARVVIANR 410 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CEEEEEcC
Confidence 46899999999999999998753 47666664
No 475
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=21.05 E-value=1.7e+02 Score=29.33 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.4
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
++.+|.|+|-|-+|-.+++.|.++. +.++|..+.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~-p~~~V~llEk~ 37 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE-PDLSVALLEKE 37 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC-CCceEEEEEcc
Confidence 4579999999999999999998764 45787777654
No 476
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.04 E-value=2e+02 Score=27.11 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.3
Q ss_pred ceeeEEEEcCChHHHHHHHHHHh
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~ 107 (269)
...+|.|+|-|..|-.++..|..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc
Confidence 35789999999999988887754
No 477
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=35 Score=34.17 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=44.8
Q ss_pred ccccccCceEEEecCCeEEECCEEEEEEecCCCCCCCCC----CCCccEEEEc---CCC--CCChhh---HHHHHHcCCC
Q 024349 135 SLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWA----ELGIDIVIEG---TGV--FVDGPG---AGKHIQAGAK 202 (269)
Q Consensus 135 S~hG~f~g~v~~~~~~~L~inGk~I~V~~~~~P~~i~w~----~~gvDiVve~---TG~--f~~~e~---a~~Hl~aGak 202 (269)
.|||.|....- ++..|.+-+.++.+. .-+.+-|. ...+|+||-+ ||. -.+++. ++..+++|||
T Consensus 279 ATHg~f~s~~p--~~S~l~~~~~~~~~~---~~~~~~~~~~~~~~~vdLvVLSACqTa~g~gd~~a~lGLag~a~~aGa~ 353 (420)
T COG4995 279 ATHGQFSSGNP--EDSFLLLWDGPINVT---ELDILLRNRNNNLLPVELVVLSACQTALGEGDGRAYLGLAGGAVYAGAK 353 (420)
T ss_pred eccccccCCCc--ccceeeecCCCCccc---HHHHHHHhcccCCCCeeeEEEecchhccCCCCChhhhhHHHHHHHhchh
Confidence 58999986432 456676666555442 23344555 5688988865 344 444443 4578889999
Q ss_pred EEEEecCC
Q 024349 203 KVIITAPA 210 (269)
Q Consensus 203 kVIISAP~ 210 (269)
.+|-|=..
T Consensus 354 s~laSLW~ 361 (420)
T COG4995 354 SALASLWS 361 (420)
T ss_pred hhhheeee
Confidence 98876544
No 478
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.97 E-value=2.1e+02 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=21.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
-.|+|.|.|.+|..++.-.-.+. --+|++|.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~G--AsrIIgvD 224 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAG--ASRIIGVD 224 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcC--cccEEEEe
Confidence 46999999999988776543332 23777773
No 479
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=20.82 E-value=1.3e+02 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
-||.|.|.|-+|..+++.|..-
T Consensus 33 ~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHc
Confidence 5899999999999999998753
No 480
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.79 E-value=1.7e+02 Score=25.61 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=22.8
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|-| .|-||+.+++.|.++. .+++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G---~~v~~~~ 33 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG---ATLGLVA 33 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 4688888 9999999999998652 3555443
No 481
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.66 E-value=2.3e+02 Score=29.96 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=32.1
Q ss_pred CHHHHHHHhhcccccCCCCCccccccceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEE
Q 024349 59 SFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (269)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaI 118 (269)
.+..|+.++-+...... ........||+|+|.|.+|+.++..+..+. .++|+.+
T Consensus 286 ~~~aF~~~~~~~~~~~~----~~~~~~i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~ 339 (708)
T PRK11154 286 LRSIFFATTEMKKDTGS----DAKPRPVNKVGVLGGGLMGGGIAYVTATKA--GLPVRIK 339 (708)
T ss_pred HHHHHHHHHHhcCCCCC----CCCCCcccEEEEECCchhhHHHHHHHHHHc--CCeEEEE
Confidence 36667666554321111 111123457999999999999998766332 3665544
No 482
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=20.63 E-value=1.6e+02 Score=28.09 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.9
Q ss_pred ceeeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
|+.+|+|+|-|.-|-..++.|.+. + ++++.+.+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G--~~VlvlEk 34 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-G--LDVLVLEK 34 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-C--CeEEEEec
Confidence 568999999999999999988754 2 77777765
No 483
>PRK08618 ornithine cyclodeaminase; Validated
Probab=20.53 E-value=1.5e+02 Score=27.98 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.5
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
.+|+|.|.|.+||..++++... .+++-|.|-+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc--CCccEEEEECC
Confidence 5799999999999999887643 23444445444
No 484
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.50 E-value=1.8e+02 Score=28.32 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=27.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcCC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd~ 121 (269)
+||.|+|-|.-|-..++.|..+ ..+.+|+.|++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-DKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-CCCCCEEEEECC
Confidence 4899999999999988887654 345788888764
No 485
>PRK09897 hypothetical protein; Provisional
Probab=20.45 E-value=1.5e+02 Score=30.48 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=25.8
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|+|+|-|.-|-.++..|..+. .+++|..+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp 34 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQ 34 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEec
Confidence 48999999999999998887643 4567666654
No 486
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.42 E-value=1.4e+02 Score=29.16 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.7
Q ss_pred eeEEEEcCChHHHHHHHHHHhC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGR 108 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r 108 (269)
.||.|.|+|..|+.+++.|.++
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC
Confidence 4799999999999999998865
No 487
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.34 E-value=1.4e+02 Score=23.10 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred eeEEEEcCChHHHHHHHHHHhCCCCCceEEEEcC
Q 024349 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (269)
Q Consensus 87 ikVaInGfGrIGR~llR~l~~r~~~~l~iVaInd 120 (269)
.+|.|+|.|.+|..-++.|.+.. -++.+|..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~g---A~v~vis~ 38 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAG---AKVTVISP 38 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCT---BEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 58999999999998888887642 35555554
No 488
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=20.23 E-value=1.5e+02 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=18.5
Q ss_pred ceeeEEEEcCChHHHHHHHHHHh
Q 024349 85 AKLKVAINGFGRIGRNFLRCWHG 107 (269)
Q Consensus 85 ~~ikVaInGfGrIGR~llR~l~~ 107 (269)
|+.+|.|+|-|..|-.++..|..
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHH
Confidence 34689999999999988876644
No 489
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.16 E-value=1.6e+02 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=23.0
Q ss_pred eEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 88 kVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
+|.|.| .|-||+.+++.|.++. .+++++.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g---~~v~~~~ 32 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAG---ANVVVND 32 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 588999 9999999999998753 4666554
No 490
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=20.09 E-value=1.1e+02 Score=30.10 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.1
Q ss_pred ceeeEEEEcC-ChHHHHHHHHHHhCC
Q 024349 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (269)
Q Consensus 85 ~~ikVaInGf-GrIGR~llR~l~~r~ 109 (269)
.+.||+|.|. |+||-.++-.|..+.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 4689999997 999999998877553
No 491
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.04 E-value=1.8e+02 Score=25.31 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=23.6
Q ss_pred eeEEEEc-CChHHHHHHHHHHhCCCCCceEEEEc
Q 024349 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (269)
Q Consensus 87 ikVaInG-fGrIGR~llR~l~~r~~~~l~iVaIn 119 (269)
.+|.|.| .|.||+.+++.|.++. .+|+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~~ 41 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAG---AEVILNG 41 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4789999 8999999999998753 4665553
Done!