RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024349
(269 letters)
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 188 bits (479), Expect = 4e-61
Identities = 121/167 (72%), Positives = 137/167 (82%), Gaps = 2/167 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
LKVAINGFGRIGRNFLRCWHGRKDSPLDVVV+ND+GGVK ASHLLKYDS+LGTF ADVK
Sbjct: 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKT 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+ ISVDGK+IKVVS+R+P+ LPW ++GID+VIEGTGVFVD GAGKH+QAGAKKV+I
Sbjct: 61 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
TAP KG DIPTYVVGVNE+ Y H I+SNAS V + D
Sbjct: 121 TAPGKG-DIPTYVVGVNEEGYTHA-DTIISNASNEWGYSQRVVDLAD 165
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 183 bits (466), Expect = 5e-59
Identities = 79/166 (47%), Positives = 100/166 (60%), Gaps = 3/166 (1%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
+VAINGFGRIGR R + RK+ ++VV +ND K +HLLKYDS+ F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
++ VDGK IKV + DP +LPW +LG+D VIE TGVF + A H+QAGAKKVIIT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
APAKG D T V+G NE E I+S AS V ++
Sbjct: 121 APAKGED-ITVVIGCNEDQLKPEH-TIISCASNEYGYSNRVVDTLE 164
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 180 bits (459), Expect = 5e-58
Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADV 144
K+KV +NGFGRIGR R +D+V +ND + ++ +YDS G F V
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 58
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
K +N + ++G I + RDP ++ W + G + V+E TGVF AG H+Q GAK+V
Sbjct: 59 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 117
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGKQ 259
II+AP+ A P +V+GVN + YD+ + I+SNAS V +M K+
Sbjct: 118 IISAPSADA--PMFVMGVNHEKYDNSL-KIISNASNEFGYSNRVVDLMAHMASKE 169
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 177 bits (451), Expect = 6e-57
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 6/168 (3%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R R D +++V +ND +++LKYDS G F V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
V + + V+GK I+V + RDP L W E+G+D+V E TG+F+ A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDE 254
T P+K P +V G N Y + +IVSNAS T + ++
Sbjct: 119 TGPSKDNT-PMFVKGANFDKYAGQ--DIVSNASNETGYSNKVLDLIAH 163
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 168 bits (426), Expect = 4e-53
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR LR + VV VND ++ ++ KYDS G FK +VK
Sbjct: 2 KIGINGFGRIGRLVLRAAL---EMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
++ + VDGK I V + P +PW++ G + ++E TGVF A H + GAKKVII
Sbjct: 58 AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELG 257
+AP+ D P +V GVN + Y + +VSNAS + ++
Sbjct: 118 SAPSA--DAPMFVCGVNLEKYSKD-MKVVSNASNEFGYSQRVIDLIKHMQK 165
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 164 bits (415), Expect = 3e-51
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 12/185 (6%)
Query: 86 KLKVAINGFGRIGRNFLR--CWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKA 142
+KV INGFGRIGR + C G + +DVV V D + ++ ++YD++ G FK
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 143 DVKIVDNE-------TISVDGKLIKVVS-NRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194
+V + T+ V+G I V R+P LPW +LG++ VIE TG+F A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDE 254
H++ GA+KV+I+APA G T V+GVN +Y+ ++VSNA V ++
Sbjct: 122 GHLRGGARKVVISAPASGGA-KTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRH 180
Query: 255 ELGKQ 259
K
Sbjct: 181 MASKD 185
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 156 bits (396), Expect = 2e-48
Identities = 75/166 (45%), Positives = 97/166 (58%), Gaps = 4/166 (2%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
KV INGFGRIGRN R D ++VV VND +HLLKYDS+ G V
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLD-AEVSV 59
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+ + V+GK I V + RDP L W E+G+DIV+E TG F A KH++AGAKKVII+
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 208 APAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMD 253
APAK + T V+GVN+ YD + +++SNAS T V +
Sbjct: 120 APAKN-EDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA 164
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 153 bits (388), Expect = 2e-47
Identities = 79/172 (45%), Positives = 106/172 (61%), Gaps = 8/172 (4%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKI 146
+KV INGFGRIGR R H R ++V ++ND K +HLLKYDS+ F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY 57
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
D + VDGK I+ + +DP ++PWAE G+ +VIE TGVF D A H++ GAKKVII
Sbjct: 58 DDQ-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCT---TNCLAPFVKVMDEE 255
TAPAKG D T V+GVN + YD +I+SNAS N +A V+++ +
Sbjct: 117 TAPAKGED-ITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 149 bits (378), Expect = 8e-46
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 15/171 (8%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDS-LLGTFKADVKI 146
VAING+G +G+ + D + V+ V+ + A LK L VK+
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+ I V G + DIVI+ T + + + G K +
Sbjct: 61 FEKAGIEVAGTV------------DDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELG 257
++ N ++ + V + + +++ +++
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYK 159
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 145 bits (366), Expect = 3e-44
Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKI 146
K+ INGFGRIGR R GRKD ++VV +ND + + +LLKYDS+ G F
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVT 58
Query: 147 VDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206
+ + + K + V + +DP Q+PW + +D+V E TGVF+ A H++ GAKKVI+
Sbjct: 59 HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 118
Query: 207 TAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELG 257
+AP K P YV+G+N YD + IVSNAS +V+D +
Sbjct: 119 SAPPKDDT-PIYVMGINHHQYDTKQ-LIVSNASN---EWGYSNRVLDLAVH 164
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 137 bits (345), Expect = 6e-41
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 15/173 (8%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLG-TFKADV 144
K+KV +NG+G IG+ + D ++++ + + A + + + +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTKPDFEAYRAKELGIPVYAASEEFI 59
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+ E V G L +DI+++ T + + +AG K +
Sbjct: 60 PRFEKEGFEVAGTL------------NDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAI 107
Query: 205 IITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELG 257
++V N + + V + + ++ D+
Sbjct: 108 FQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDS 160
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 129 bits (326), Expect = 6e-38
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 17/167 (10%)
Query: 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIV 147
VA+NG+G IG+ + D + +V V + A + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 148 DNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207
+ I V G + DIV++ T V ++Q + I
Sbjct: 61 EESGIPVAGTV------------EDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQ 107
Query: 208 APAKGADI-PTYVVGVNEKDYDH-EVANIVSNASCTTNCLAPFVKVM 252
K ++ N + + +VS + + M
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASM 154
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 126 bits (318), Expect = 7e-37
Identities = 66/154 (42%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 87 LKVAINGFGRIGRNFLRCWHGR-KDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAING+GRIGRN LR + K +++V +ND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
V+ + V+G I+V +NR+P QLPW L +D+V+E TG F AG HI+ GAKKVI
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 206 ITAPAKGADIPTYVVGVNEKDYDHEVANIVSNAS 239
I+AP T V GVN ++SNA
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTD-TVISNAD 153
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 43.0 bits (101), Expect = 7e-06
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 239 SCTTNCLAPFVKVMDEELG 257
SCTTNCLAP VK ++++LG
Sbjct: 1 SCTTNCLAPLVKPLNDKLG 19
Score = 25.3 bits (55), Expect = 5.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 146 IVDNETISVDGKLIKVVS 163
VD V G+L+KV S
Sbjct: 143 TVDASLTKVSGRLVKVSS 160
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 40.4 bits (94), Expect = 5e-05
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 240 CTTNCLAPFVKVMDEELG 257
CTTN LAP +KV++E G
Sbjct: 1 CTTNSLAPVMKVLEEAFG 18
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 40.2 bits (94), Expect = 7e-05
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 240 CTTNCLAPFVKVMDEELG 257
CTTNCLAPF KV+ E+ G
Sbjct: 1 CTTNCLAPFAKVLHEQFG 18
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 39.9 bits (93), Expect = 8e-05
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 240 CTTNCLAPFVKVMDEELG 257
CTTNCLAPFVKV+D++ G
Sbjct: 1 CTTNCLAPFVKVLDQKFG 18
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 39.9 bits (93), Expect = 8e-05
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 240 CTTNCLAPFVKVMDEELG 257
CTTNCLAP KV+ + G
Sbjct: 1 CTTNCLAPLAKVIHDNFG 18
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 39.7 bits (92), Expect = 1e-04
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 239 SCTTNCLAPFVKVMDEE 255
SCTTNCLAP V V+ +E
Sbjct: 1 SCTTNCLAPIVHVLVKE 17
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 36.0 bits (82), Expect = 0.002
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSL 136
K V + G GR G LR + + ++ S + ++ SL
Sbjct: 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISL 57
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 35.2 bits (81), Expect = 0.003
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 239 SCTTNCLAPFVKVMDEELG 257
SC T L +K + + G
Sbjct: 1 SCNTTGLCRTLKPLHDSFG 19
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 32.9 bits (74), Expect = 0.020
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
++VAI G+G +GR+ + + D L + + D DV
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVL 62
Query: 146 IV 147
+
Sbjct: 63 FL 64
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 32.5 bits (74), Expect = 0.024
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 240 CTTNCLAPFVKVMDEELG 257
C T L + +++
Sbjct: 1 CNTTALLRTICTVNKVSK 18
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 32.3 bits (72), Expect = 0.033
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
++++ + G I R R H ++ + V
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRS 35
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 28.8 bits (64), Expect = 0.41
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 15/130 (11%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSP-LDVVVVNDSGGVKNASHLLKYDSLLGTFKADV 144
+ VA+ G G +G FL K + ++V++ ++ + + + +KA +
Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLN-VGSDWKAAL 62
Query: 145 KIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204
+T+ +D D + I+++ T AG + + +
Sbjct: 63 AASTTKTLPLD----------DLIAHLKTSPKPVILVDNTS---SAYIAGFYTKFVENGI 109
Query: 205 IITAPAKGAD 214
I P K A
Sbjct: 110 SIATPNKKAF 119
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 28.3 bits (62), Expect = 0.65
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120
K+++ I G G R ++ V
Sbjct: 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS 37
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 27.7 bits (61), Expect = 0.84
Identities = 32/158 (20%), Positives = 48/158 (30%), Gaps = 25/158 (15%)
Query: 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVK 145
KLKVAI G G IG + + R L++ + G+ AS L +G
Sbjct: 4 KLKVAIIGSGNIGTDLMIK-VLRNAKYLEMGAM---VGIDAASDGLARAQRMGVTTTYAG 59
Query: 146 IVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 205
+ + ID V + T QA +
Sbjct: 60 VEGLIKLPEFAD-------------------IDFVFDATSASAHVQNEALLRQAKPGIRL 100
Query: 206 ITAPAKGADIPTYVVGVNEKDY-DHEVANIVSNASCTT 242
I A P V VN +++ N+V+ A
Sbjct: 101 IDL-TPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLD 137
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 27.6 bits (60), Expect = 1.2
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 86 KLKVAINGFGRIGRNF-LRCWHGRKDSPLDVVV 117
KL++ + G G I + L D L
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAW 33
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 27.4 bits (59), Expect = 1.8
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVV 117
+ AI G G+ N L + G + S ++ +V
Sbjct: 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALV 65
>d2arha1 d.108.1.9 (A:1-196) Hypothetical protein Aq_1966 {Aquifex
aeolicus [TaxId: 63363]}
Length = 196
Score = 26.8 bits (59), Expect = 2.1
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 130 LLKYDSLLGTFKADVKIVD-----------------NETISVDGKLI---KVVSNRDPLQ 169
++KY+ LL T + + + N +S+ K + KV R P
Sbjct: 1 MVKYEELLKTLENGINSEEGEIRLVRKSQGRFKEEFNFDLSLGSKPLLTLKVFLGRKPYW 60
Query: 170 LPWAELGIDIVIEGTGVFVDGP 191
PW E+ + VF
Sbjct: 61 QPWVEV-FGVNPNLRNVFFGSE 81
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 24.8 bits (54), Expect = 3.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 141 KADVKIVDNETISVDGKLIKVVS 163
+ KIV +T+S G ++VV+
Sbjct: 57 RKRCKIVAGQTVSFAGHSVQVVA 79
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 24.8 bits (54), Expect = 3.8
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 141 KADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG 183
+ +++I ++ D I V + + ID+ ++G
Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDG 44
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 25.8 bits (56), Expect = 5.0
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 80 KKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130
+ +T+ VA+ GFG + + V + G + + +
Sbjct: 30 ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKA--VTLSGPDGYIYDPEGI 78
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 25.6 bits (55), Expect = 5.2
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 87 LKVAINGFGRIG-RNFLRCWHGRKDSPLDVVVVNDS 121
LK+A+ G G I + +L D L + N
Sbjct: 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPK 37
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 24.5 bits (53), Expect = 6.1
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 144 VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 188
V I +N I++ G+ + V R L+ + + +++ + G
Sbjct: 10 VDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKR 54
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 25.0 bits (54), Expect = 7.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 87 LKVAINGFGRIGRNFLRCWHGRKD 110
+ V I G G IG+ + + K
Sbjct: 3 MTVLIIGMGNIGKKLVELGNFEKI 26
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 24.8 bits (53), Expect = 8.4
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWH-------G 107
AR A F + G + + + G G++ R+ H G
Sbjct: 18 ARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQG 77
Query: 108 RKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVD 148
D+ V G A + LG +
Sbjct: 78 AGDAADLSSFVFSCGSGVTACINIALVHHLG--LGHPYLYC 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 969,413
Number of extensions: 44735
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 46
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)