BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024350
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/259 (52%), Positives = 181/259 (69%), Gaps = 11/259 (4%)
Query: 8 EEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNP 67
+EEAN F AM+LASA VLP +++ +ELD+ EII KAGPGA++S EI +Q+P NP
Sbjct: 16 DEEANLF--AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPT--TNP 71
Query: 68 EAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLAPVSKYFVRNNQNGASLRPYMA 122
+A +MLDR+LRLL Y L CS DG QRLY LA V+KY V+N ++G S+
Sbjct: 72 DAP-VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN-EDGVSISALNL 129
Query: 123 LSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVME 182
++ DKVLM+ W+ LK +L+GGI FNKA+GM ++Y G D FN VF+ GM H++I M+
Sbjct: 130 MNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMK 189
Query: 183 KVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVG 242
K+LE+Y GFE A +N I+SKYP IKGIN+DL +VI++APSYPG++HVG
Sbjct: 190 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVG 249
Query: 243 GDLFESVPKADTIFMKVIC 261
GD+F S+PKAD +FMK IC
Sbjct: 250 GDMFVSIPKADAVFMKWIC 268
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 178/261 (68%), Gaps = 12/261 (4%)
Query: 7 QEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKA-GPGAKLSVSEIVAQIPLKDN 65
+EEAN F AM+LASA VLP A++A +ELDV EI+ K+ P +S +EI AQ+P
Sbjct: 17 SDEEANLF--AMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP--TT 72
Query: 66 NPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLAPVSKYFVRNNQNGASLRPY 120
NPEA +MLDRVLRLL SY+ + + + +RLY LAPV K F+ N++G SL P+
Sbjct: 73 NPEAP-VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK-FLTKNEDGVSLAPF 130
Query: 121 MALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIV 180
+ L+ DKVL++ WF LK ILEGGI FNKA+GM+I+DY G D N VF+ GM S+++I
Sbjct: 131 LLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTIT 190
Query: 181 MEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDH 240
M+K+LE Y GFE A +MI++KYP I IN+DL +VI++AP++ G++H
Sbjct: 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEH 250
Query: 241 VGGDLFESVPKADTIFMKVIC 261
+GGD+F+ VPK D IF+K IC
Sbjct: 251 LGGDMFDGVPKGDAIFIKWIC 271
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 165/265 (62%), Gaps = 13/265 (4%)
Query: 1 MASIADQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI 60
MA+ AD++ +A++LAS+ VLP ++ +EL + EI+ AG G L+ +E+ A++
Sbjct: 12 MAASADEDA----CMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKL 66
Query: 61 PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-----RLYSLAPVSKYFVRNNQNGA 115
P NPEA M +DR+LRLL SYN + C +G+ R Y APV K F+ N++G
Sbjct: 67 P-SAANPEAPDM-VDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK-FLTPNEDGV 123
Query: 116 SLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNGMLS 175
S+ ++ DKVLM+ W+ LK +L+GGI FNKA+GM ++Y G D FN VF+ GM +
Sbjct: 124 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183
Query: 176 HTSIVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSY 235
H+ I+ +K+LE Y GFE AT+ I + YP IKG+N+DL +VI AP +
Sbjct: 184 HSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243
Query: 236 PGIDHVGGDLFESVPKADTIFMKVI 260
PG+ HVGGD+F+ VP DTI MK I
Sbjct: 244 PGVTHVGGDMFKEVPSGDTILMKWI 268
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 153/270 (56%), Gaps = 14/270 (5%)
Query: 1 MASIADQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGP-GAKLSVSEIVAQ 59
+++ ++Q E++ S AM L + +V PA + A ++L++FEII KA P GA +S SEI ++
Sbjct: 13 ISATSEQTEDSACLS-AMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASK 71
Query: 60 IPLKDNNPEAAAMMLDRVLRLLVSYNALHCS---FVDG--QRLYSLAPVSKYFVRNNQNG 114
+P + + LDR+LRLL SY+ L + DG +R+Y L+ V KY V + G
Sbjct: 72 LPASTQHSDLPNR-LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRG 130
Query: 115 --ASLRPYMALSLDKVLMDGWFRLKGQILEGGI-AFNKAHGMHIYDYLGVDSSFNDVFSN 171
AS ++ L+ W K +++ I F HG+ Y+++G D N +F+
Sbjct: 131 YLASFTTFLCYP---ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNK 187
Query: 172 GMLSHTSIVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKN 231
M+ + M+++LE Y GFE L +IISKYP IKGIN+DL VI+N
Sbjct: 188 SMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 232 APSYPGIDHVGGDLFESVPKADTIFMKVIC 261
AP GI+HVGGD+F SVP+ D + +K +C
Sbjct: 248 APPLSGIEHVGGDMFASVPQGDAMILKAVC 277
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 143/270 (52%), Gaps = 14/270 (5%)
Query: 1 MASIADQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGP-GAKLSVSEIVAQ 59
+++ ++Q E++ S A L + +V PA + A ++L++FEII KA P GA S SEI ++
Sbjct: 13 ISATSEQTEDSACLS-AXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASK 71
Query: 60 IPLKDNNPEAAAMMLDRVLRLLVSYNALHCS---FVDG--QRLYSLAPVSKYFVRNNQNG 114
+P + + + R LRLL SY+ L + DG +R+Y L+ V KY V + G
Sbjct: 72 LPASTQHSDLPNRLD-RXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRG 130
Query: 115 --ASLRPYMALSLDKVLMDGWFRLKGQILEGGIA-FNKAHGMHIYDYLGVDSSFNDVFSN 171
AS ++ L+ W K +++ I F HG+ Y++ G D N +F+
Sbjct: 131 YLASFTTFLCYP---ALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNK 187
Query: 172 GMLSHTSIVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKN 231
+ + ++ LE Y GFE L +IISKYP IKGIN+DL VI+N
Sbjct: 188 SXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 232 APSYPGIDHVGGDLFESVPKADTIFMKVIC 261
AP GI+HVGGD F SVP+ D +K +C
Sbjct: 248 APPLSGIEHVGGDXFASVPQGDAXILKAVC 277
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 106/239 (44%), Gaps = 10/239 (4%)
Query: 23 AIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82
A + +++ VE+++ II G +S+S +V+ + + P + + R++R L
Sbjct: 26 AFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV----PSSKIGNVRRLMRYL- 78
Query: 83 SYNALHCSFVDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILE 142
++N + Y+L S+ VR + L P + LD L + LK I E
Sbjct: 79 AHNGFFEIITKEEESYALTVASELLVRGSD--LCLAPMVECVLDPTLSGSYHELKKWIYE 136
Query: 143 GGIA-FNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHXXXXXXXX 201
+ F G +D+L + +N F++ M S + ++ + + F+
Sbjct: 137 EDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVG 196
Query: 202 XXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKADTIFMKVI 260
T +I +P +K I +D V++N + +VGGD+F S+P AD + +K I
Sbjct: 197 GGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYI 255
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 10/239 (4%)
Query: 23 AIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82
A + +++ VE ++ II G +S+S +V+ + + P + + R+ R L
Sbjct: 26 AFIDSXSLKWAVEXNIPNIIQNHG--KPISLSNLVSILQV----PSSKIGNVRRLXRYL- 78
Query: 83 SYNALHCSFVDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILE 142
++N + Y+L S+ VR + L P + LD L + LK I E
Sbjct: 79 AHNGFFEIITKEEESYALTVASELLVRGSD--LCLAPXVECVLDPTLSGSYHELKKWIYE 136
Query: 143 GGIA-FNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHXXXXXXXX 201
+ F G +D+L + +N F++ S + ++ + + F+
Sbjct: 137 EDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVG 196
Query: 202 XXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKADTIFMKVI 260
T +I +P +K I +D V++N + +VGGD F S+P AD + +K I
Sbjct: 197 GGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYI 255
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 21/247 (8%)
Query: 23 AIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLL- 81
A V +++ +E+++ II G LS + QIP + +D V RL+
Sbjct: 26 AFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP---------STKVDNVQRLMR 76
Query: 82 -VSYNALHCSFVDGQRL------YSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWF 134
+++N + Q L Y+L S+ V+ + L P + LD L +
Sbjct: 77 YLAHNGFF-EIITNQELENEEEAYALTVASELLVKGTE--LCLAPMVECVLDPTLSTSFH 133
Query: 135 RLKGQILEGGIA-FNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEH 193
LK + E + F G ++++L + +N ++++ + S + ++ + + FE
Sbjct: 134 NLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEG 193
Query: 194 XXXXXXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKAD 253
T +I +P + + +D V++N + +VGGD+F SVPKAD
Sbjct: 194 LESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKAD 253
Query: 254 TIFMKVI 260
+ +K +
Sbjct: 254 AVLLKAV 260
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 29 AMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
A+++ +EL + + I G +++SE+ + + L +P + +L R LRLL
Sbjct: 26 ALKSAMELGIADAI--HNHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 79
Query: 89 CSFVDGQRL-------YSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQIL 141
+ V G+ YSL P SK + L + +L +D W K
Sbjct: 80 KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 137
Query: 142 EGG--IAFNKAHGMHIYDYLGVDS--SFNDVFSNGMLSHTSIVMEKVLESYKGFEHXXXX 197
E F A G +D+L DS S +F + M S + + + E+ + FE
Sbjct: 138 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 197
Query: 198 XXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKADTIFM 257
+I +PH+K +D V+ N ++ VGGD+F+S+P AD + +
Sbjct: 198 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 257
Query: 258 KVI 260
K +
Sbjct: 258 KWV 260
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 29 AMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
A+++ +EL + + I G +++SE+ + + L +P + +L R LRLL
Sbjct: 25 ALKSAMELGIADAI--HNHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 78
Query: 89 CSFVDGQRL-------YSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQIL 141
+ V G+ YSL P SK + L + +L +D W K
Sbjct: 79 KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 136
Query: 142 EGG--IAFNKAHGMHIYDYLGVDS--SFNDVFSNGMLSHTSIVMEKVLESYKGFEHXXXX 197
E F A G +D+L DS S +F + M S + + + E+ + FE
Sbjct: 137 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 196
Query: 198 XXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKADTIFM 257
+I +PH+K +D V+ N ++ VGGD+F+S+P AD + +
Sbjct: 197 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 256
Query: 258 KVI 260
K +
Sbjct: 257 KWV 259
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 19/243 (7%)
Query: 29 AMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
A+++ +EL + + I G +++SE+ + + L +P + +L R LRLL
Sbjct: 22 ALKSAMELGIADAI--HNHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 75
Query: 89 CSFVDGQRL-------YSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQIL 141
+ V G+ YSL P SK + L + +L +D W K
Sbjct: 76 KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 133
Query: 142 EGG--IAFNKAHGMHIYDYLGVDS--SFNDVFSNGMLSHTSIVMEKVLESYKGFEHXXXX 197
E F A G +D+L DS S +F + M S + + + E+ + FE
Sbjct: 134 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 193
Query: 198 XXXXXXXXATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVPKADTIFM 257
+I +PH+K +D V+ N ++ VGGD+F+S+P AD + +
Sbjct: 194 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 253
Query: 258 KVI 260
K +
Sbjct: 254 KWV 256
>pdb|2G2C|A Chain A, Putative Molybdenum Cofactor Biosynthesis Protein From
Corynebacterium Diphtheriae
Length = 167
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 9 EEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPE 68
+E ++SY EL S +V+P VVE I T GA+ ++ I K+ PE
Sbjct: 36 DELQDYSY--ELISEVVVPEGYDTVVE----AIATALKQGARFIITAGGTGIRAKNQTPE 89
Query: 69 AAAMML 74
A A +
Sbjct: 90 ATASFI 95
>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
Upf0176 Protein Lpg2838 From Legionella Pneumophila At
The Resolution 1.8a, Northeast Structural Genomics
Consortium (Nesg) Target Lgr82
Length = 265
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 116 SLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDV 168
SLR + ++ + G L + + GG A N+ YDYL DS F D+
Sbjct: 31 SLREPILTKXHEIGIKGTIILAHEGVNGGFAGNREQXNVFYDYLRSDSRFADL 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,300,833
Number of Sequences: 62578
Number of extensions: 277598
Number of successful extensions: 498
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 16
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)