Query 024350
Match_columns 269
No_of_seqs 143 out of 1161
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.9E-48 1.3E-52 348.9 19.4 247 10-269 5-262 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.1E-45 3.9E-50 334.1 25.0 258 6-268 13-276 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 5.6E-45 1.9E-49 330.0 24.6 257 8-268 16-278 (368)
4 3lst_A CALO1 methyltransferase 100.0 3.7E-42 1.3E-46 309.2 21.1 246 5-268 14-264 (348)
5 1zg3_A Isoflavanone 4'-O-methy 100.0 4.1E-42 1.4E-46 309.9 20.2 253 6-268 3-268 (358)
6 1fp2_A Isoflavone O-methyltran 100.0 1.6E-41 5.5E-46 305.4 21.6 252 6-268 9-263 (352)
7 3gwz_A MMCR; methyltransferase 100.0 9.6E-42 3.3E-46 308.9 20.0 246 6-268 31-285 (369)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 7.3E-41 2.5E-45 303.3 22.4 257 4-268 13-284 (372)
9 3i53_A O-methyltransferase; CO 100.0 1.4E-41 4.7E-46 303.4 15.8 237 15-268 7-252 (332)
10 2ip2_A Probable phenazine-spec 100.0 6.2E-40 2.1E-44 292.7 19.5 236 12-268 7-250 (334)
11 3dp7_A SAM-dependent methyltra 100.0 2.2E-39 7.5E-44 292.8 17.1 242 5-268 7-265 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 8.1E-38 2.8E-42 282.9 16.4 241 11-268 14-265 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 5E-37 1.7E-41 276.5 18.0 240 12-268 18-266 (360)
14 1x19_A CRTF-related protein; m 100.0 4.4E-36 1.5E-40 270.5 19.7 232 7-267 24-272 (359)
15 2r3s_A Uncharacterized protein 100.0 2.4E-35 8.4E-40 262.6 18.0 231 14-268 7-249 (335)
16 3mcz_A O-methyltransferase; ad 100.0 2.2E-35 7.5E-40 265.0 16.9 234 7-268 18-265 (352)
17 2qm3_A Predicted methyltransfe 99.3 2.7E-11 9.3E-16 109.2 11.5 187 37-262 47-252 (373)
18 3dtn_A Putative methyltransfer 98.8 6.3E-09 2.2E-13 86.9 8.2 84 184-267 35-125 (234)
19 3ege_A Putative methyltransfer 98.8 1.4E-08 4.8E-13 86.6 10.3 81 183-266 25-109 (261)
20 2qe6_A Uncharacterized protein 98.8 8E-09 2.7E-13 89.1 8.6 76 193-268 77-174 (274)
21 4gek_A TRNA (CMO5U34)-methyltr 98.8 2.5E-09 8.4E-14 91.8 5.0 76 192-267 69-155 (261)
22 1vl5_A Unknown conserved prote 98.8 7.8E-09 2.7E-13 87.8 7.0 85 180-267 25-119 (260)
23 3dlc_A Putative S-adenosyl-L-m 98.8 7.8E-09 2.7E-13 84.9 6.6 81 183-266 35-126 (219)
24 1ve3_A Hypothetical protein PH 98.8 7.1E-09 2.4E-13 85.9 6.3 71 193-265 38-117 (227)
25 3ou2_A SAM-dependent methyltra 98.7 3.8E-08 1.3E-12 80.9 9.2 83 183-267 36-123 (218)
26 3dh0_A SAM dependent methyltra 98.7 1.7E-08 5.8E-13 83.3 6.4 84 182-266 27-121 (219)
27 2o57_A Putative sarcosine dime 98.7 3E-08 1E-12 85.9 8.2 83 182-266 68-165 (297)
28 3mgg_A Methyltransferase; NYSG 98.7 2.8E-08 9.6E-13 85.1 7.5 77 191-267 35-121 (276)
29 3bus_A REBM, methyltransferase 98.7 4.9E-08 1.7E-12 83.3 9.0 84 182-267 51-145 (273)
30 2p35_A Trans-aconitate 2-methy 98.7 2.7E-08 9.2E-13 84.1 6.9 83 183-266 24-110 (259)
31 1nkv_A Hypothetical protein YJ 98.7 5.8E-08 2E-12 82.0 8.5 84 182-267 26-119 (256)
32 1xxl_A YCGJ protein; structura 98.7 4.6E-08 1.6E-12 82.2 7.6 83 182-267 11-103 (239)
33 3ujc_A Phosphoethanolamine N-m 98.7 2.2E-08 7.4E-13 84.9 5.7 82 182-265 45-134 (266)
34 3vc1_A Geranyl diphosphate 2-C 98.7 9.1E-08 3.1E-12 83.7 9.7 96 168-265 93-199 (312)
35 3jwg_A HEN1, methyltransferase 98.6 2.1E-08 7.2E-13 82.9 4.9 76 192-267 28-118 (219)
36 3gu3_A Methyltransferase; alph 98.6 4.8E-08 1.7E-12 84.3 7.2 77 191-267 20-105 (284)
37 3jwh_A HEN1; methyltransferase 98.6 2.5E-08 8.6E-13 82.3 5.2 76 192-267 28-118 (217)
38 3g5l_A Putative S-adenosylmeth 98.6 6.8E-08 2.3E-12 81.6 7.3 82 183-266 35-123 (253)
39 3bkw_A MLL3908 protein, S-aden 98.6 9.8E-08 3.4E-12 79.8 8.2 82 183-266 34-122 (243)
40 4hg2_A Methyltransferase type 98.6 9.9E-08 3.4E-12 81.5 8.1 71 193-265 39-113 (257)
41 3hem_A Cyclopropane-fatty-acyl 98.6 1.1E-07 3.7E-12 82.7 7.9 83 182-267 62-153 (302)
42 3dli_A Methyltransferase; PSI- 98.6 9.9E-08 3.4E-12 80.0 7.3 73 191-267 39-117 (240)
43 1xtp_A LMAJ004091AAA; SGPP, st 98.6 3.3E-08 1.1E-12 83.3 4.1 83 182-266 83-173 (254)
44 3f4k_A Putative methyltransfer 98.6 1.4E-07 4.6E-12 79.8 7.9 80 184-264 37-127 (257)
45 3ccf_A Cyclopropane-fatty-acyl 98.6 7.6E-08 2.6E-12 82.7 6.3 82 183-267 48-133 (279)
46 3hnr_A Probable methyltransfer 98.6 7.8E-08 2.7E-12 79.3 6.1 81 184-267 37-122 (220)
47 3kkz_A Uncharacterized protein 98.6 1.3E-07 4.3E-12 80.7 7.6 73 191-264 44-127 (267)
48 3g5t_A Trans-aconitate 3-methy 98.5 2E-07 7E-12 80.8 8.8 73 192-264 35-126 (299)
49 2yqz_A Hypothetical protein TT 98.5 2.1E-07 7.1E-12 78.7 8.1 74 191-266 37-119 (263)
50 3l8d_A Methyltransferase; stru 98.5 2.3E-07 7.8E-12 77.5 8.1 74 192-267 52-132 (242)
51 3h2b_A SAM-dependent methyltra 98.5 7.4E-08 2.5E-12 78.5 4.9 72 194-267 42-118 (203)
52 2p7i_A Hypothetical protein; p 98.5 1.1E-07 3.6E-12 79.6 5.8 73 193-267 42-119 (250)
53 3ocj_A Putative exported prote 98.5 4.5E-08 1.5E-12 85.4 3.2 77 191-267 116-203 (305)
54 1pjz_A Thiopurine S-methyltran 98.5 7.3E-08 2.5E-12 79.2 4.1 80 184-266 14-116 (203)
55 1kpg_A CFA synthase;, cyclopro 98.5 2.7E-07 9.4E-12 79.3 7.9 82 183-267 55-145 (287)
56 2xvm_A Tellurite resistance pr 98.5 2.1E-07 7.3E-12 75.2 6.8 82 183-267 23-113 (199)
57 3bkx_A SAM-dependent methyltra 98.5 1.6E-07 5.5E-12 80.2 6.3 84 183-267 34-138 (275)
58 4htf_A S-adenosylmethionine-de 98.5 2E-07 6.8E-12 80.2 6.5 81 183-267 60-152 (285)
59 4fsd_A Arsenic methyltransfera 98.5 2.4E-07 8.2E-12 83.5 7.1 75 193-267 83-182 (383)
60 3g07_A 7SK snRNA methylphospha 98.5 2.5E-07 8.5E-12 80.3 6.9 41 193-233 46-87 (292)
61 3e05_A Precorrin-6Y C5,15-meth 98.4 5.2E-07 1.8E-11 73.7 8.2 80 183-263 31-120 (204)
62 3i9f_A Putative type 11 methyl 98.4 8.4E-08 2.9E-12 75.9 3.3 77 185-266 10-90 (170)
63 3fzg_A 16S rRNA methylase; met 98.4 3.7E-08 1.3E-12 80.0 1.0 73 192-266 48-130 (200)
64 1jg1_A PIMT;, protein-L-isoasp 98.4 1.4E-07 5E-12 78.9 4.5 83 182-266 81-173 (235)
65 3cgg_A SAM-dependent methyltra 98.4 3E-07 1E-11 73.8 6.0 80 183-266 38-123 (195)
66 3ofk_A Nodulation protein S; N 98.4 3.6E-07 1.2E-11 75.1 6.5 75 191-267 49-130 (216)
67 3hm2_A Precorrin-6Y C5,15-meth 98.4 3.3E-07 1.1E-11 72.7 6.1 78 184-263 17-106 (178)
68 3q87_B N6 adenine specific DNA 98.4 7.9E-07 2.7E-11 70.8 8.2 68 194-267 24-94 (170)
69 3pfg_A N-methyltransferase; N, 98.4 6.3E-07 2.1E-11 76.1 8.1 73 192-266 49-126 (263)
70 2fk8_A Methoxy mycolic acid sy 98.4 4.3E-07 1.5E-11 79.4 7.0 82 182-266 80-170 (318)
71 3lcc_A Putative methyl chlorid 98.4 2.1E-07 7.1E-12 77.7 4.4 71 195-267 68-148 (235)
72 3b3j_A Histone-arginine methyl 98.4 3.4E-07 1.2E-11 85.0 6.1 84 182-267 148-240 (480)
73 3sm3_A SAM-dependent methyltra 98.4 7.1E-07 2.4E-11 73.9 7.0 74 192-267 29-117 (235)
74 3uwp_A Histone-lysine N-methyl 98.4 6E-07 2.1E-11 81.2 6.9 80 182-262 163-263 (438)
75 1yb2_A Hypothetical protein TA 98.3 5.7E-07 1.9E-11 77.2 6.5 74 183-257 101-185 (275)
76 3ggd_A SAM-dependent methyltra 98.3 4.1E-07 1.4E-11 76.4 5.4 74 192-267 55-140 (245)
77 1yzh_A TRNA (guanine-N(7)-)-me 98.3 9E-07 3.1E-11 72.9 7.2 67 193-259 41-119 (214)
78 3cc8_A Putative methyltransfer 98.3 1.1E-06 3.8E-11 72.4 7.7 81 182-267 23-109 (230)
79 2b3t_A Protein methyltransfera 98.3 1.1E-06 3.9E-11 75.3 7.9 66 193-258 109-183 (276)
80 3e23_A Uncharacterized protein 98.3 7.5E-07 2.6E-11 73.0 6.2 74 191-266 41-117 (211)
81 3mq2_A 16S rRNA methyltransfer 98.3 2E-06 7E-11 70.8 8.8 66 191-256 25-103 (218)
82 2ex4_A Adrenal gland protein A 98.3 3.4E-07 1.2E-11 76.8 3.6 74 193-267 79-162 (241)
83 3m70_A Tellurite resistance pr 98.3 7.7E-07 2.6E-11 76.5 5.9 82 183-267 111-200 (286)
84 3thr_A Glycine N-methyltransfe 98.3 5.5E-07 1.9E-11 77.6 4.9 73 192-266 56-146 (293)
85 3kr9_A SAM-dependent methyltra 98.3 6.3E-07 2.1E-11 74.9 4.9 67 193-259 15-92 (225)
86 3lbf_A Protein-L-isoaspartate 98.3 1.6E-06 5.5E-11 70.9 7.3 80 184-266 69-158 (210)
87 4dcm_A Ribosomal RNA large sub 98.3 1.4E-06 4.9E-11 78.3 7.3 79 184-263 214-304 (375)
88 1af7_A Chemotaxis receptor met 98.3 7.2E-07 2.5E-11 76.8 5.1 75 193-267 105-229 (274)
89 2yxe_A Protein-L-isoaspartate 98.3 1.5E-06 5.2E-11 71.3 6.8 81 184-265 69-160 (215)
90 3bxo_A N,N-dimethyltransferase 98.3 1.1E-06 3.8E-11 73.1 6.0 73 192-266 39-116 (239)
91 3mb5_A SAM-dependent methyltra 98.2 1.7E-06 5.9E-11 73.0 7.0 75 182-257 83-168 (255)
92 3e8s_A Putative SAM dependent 98.2 9.4E-07 3.2E-11 72.7 5.1 80 183-266 43-130 (227)
93 2fca_A TRNA (guanine-N(7)-)-me 98.2 1.4E-06 4.7E-11 72.0 6.0 65 193-257 38-114 (213)
94 3lec_A NADB-rossmann superfami 98.2 9.1E-07 3.1E-11 74.1 4.8 68 193-260 21-99 (230)
95 3d2l_A SAM-dependent methyltra 98.2 2E-06 6.9E-11 71.7 7.0 70 193-265 33-111 (243)
96 2gb4_A Thiopurine S-methyltran 98.2 8.1E-07 2.8E-11 75.6 4.4 73 193-267 68-168 (252)
97 3g2m_A PCZA361.24; SAM-depende 98.2 1.2E-06 4E-11 75.9 5.5 81 181-265 72-165 (299)
98 4dzr_A Protein-(glutamine-N5) 98.2 5.1E-07 1.7E-11 73.7 2.9 75 184-258 21-108 (215)
99 2yxd_A Probable cobalt-precorr 98.2 1.2E-06 4.2E-11 69.4 5.0 74 184-260 27-109 (183)
100 2plw_A Ribosomal RNA methyltra 98.2 5.3E-06 1.8E-10 67.2 8.8 62 183-248 12-75 (201)
101 3htx_A HEN1; HEN1, small RNA m 98.2 1.3E-06 4.6E-11 84.9 5.9 75 193-267 721-812 (950)
102 2pjd_A Ribosomal RNA small sub 98.2 1.5E-06 5.3E-11 77.0 5.6 81 182-263 186-273 (343)
103 2p8j_A S-adenosylmethionine-de 98.2 1.7E-06 5.8E-11 70.5 5.4 73 192-265 22-103 (209)
104 3gnl_A Uncharacterized protein 98.2 1.2E-06 4.2E-11 74.0 4.6 68 193-260 21-99 (244)
105 3dxy_A TRNA (guanine-N(7)-)-me 98.2 1.6E-06 5.6E-11 72.0 5.3 66 193-258 34-112 (218)
106 2gs9_A Hypothetical protein TT 98.2 1.7E-06 5.8E-11 70.7 5.3 69 193-266 36-110 (211)
107 2vdv_E TRNA (guanine-N(7)-)-me 98.2 2.1E-06 7E-11 72.4 5.9 57 192-248 48-119 (246)
108 1dus_A MJ0882; hypothetical pr 98.2 3.6E-06 1.2E-10 67.3 7.1 78 183-263 43-131 (194)
109 1y8c_A S-adenosylmethionine-de 98.2 2.3E-06 8E-11 71.2 6.1 72 193-266 37-117 (246)
110 2y1w_A Histone-arginine methyl 98.2 3.3E-06 1.1E-10 75.1 7.3 83 183-267 41-132 (348)
111 3iv6_A Putative Zn-dependent a 98.2 1.4E-06 4.7E-11 74.5 4.5 83 182-267 35-126 (261)
112 1jsx_A Glucose-inhibited divis 98.1 2.2E-06 7.4E-11 69.9 5.3 66 194-259 66-140 (207)
113 1wzn_A SAM-dependent methyltra 98.1 5.2E-06 1.8E-10 69.7 7.8 80 183-265 32-120 (252)
114 1vbf_A 231AA long hypothetical 98.1 3.7E-06 1.3E-10 69.8 6.6 81 183-266 61-149 (231)
115 3ckk_A TRNA (guanine-N(7)-)-me 98.1 4.8E-06 1.6E-10 69.9 7.4 65 193-257 46-129 (235)
116 3gjy_A Spermidine synthase; AP 98.1 2.4E-06 8.3E-11 74.9 5.6 68 195-262 91-170 (317)
117 2pwy_A TRNA (adenine-N(1)-)-me 98.1 6.1E-06 2.1E-10 69.5 7.8 74 183-257 87-172 (258)
118 2pxx_A Uncharacterized protein 98.1 2.1E-06 7.2E-11 70.0 4.7 72 192-264 41-120 (215)
119 2fyt_A Protein arginine N-meth 98.1 6.8E-06 2.3E-10 72.8 8.3 75 184-260 56-140 (340)
120 1nv8_A HEMK protein; class I a 98.1 2.6E-06 8.9E-11 73.7 5.4 65 193-258 123-199 (284)
121 1vlm_A SAM-dependent methyltra 98.1 3.4E-06 1.2E-10 69.6 5.9 66 194-266 48-117 (219)
122 1fbn_A MJ fibrillarin homologu 98.1 1.2E-05 4E-10 67.0 9.1 72 191-267 72-154 (230)
123 1ne2_A Hypothetical protein TA 98.1 3.1E-06 1.1E-10 68.7 5.4 73 192-266 50-125 (200)
124 1ej0_A FTSJ; methyltransferase 98.1 1E-05 3.5E-10 63.4 8.0 79 183-265 12-102 (180)
125 3grz_A L11 mtase, ribosomal pr 98.1 5.9E-06 2E-10 67.3 6.8 71 192-263 59-137 (205)
126 3ntv_A MW1564 protein; rossman 98.1 2.1E-06 7.2E-11 71.7 3.9 68 192-259 70-150 (232)
127 1qam_A ERMC' methyltransferase 98.1 4.5E-06 1.6E-10 70.5 6.0 77 182-261 20-103 (244)
128 3q7e_A Protein arginine N-meth 98.1 5E-06 1.7E-10 74.0 6.4 71 193-264 66-146 (349)
129 2zfu_A Nucleomethylin, cerebra 98.0 8.2E-06 2.8E-10 66.9 7.0 69 184-266 58-129 (215)
130 2h00_A Methyltransferase 10 do 98.0 4.2E-06 1.4E-10 70.6 5.2 71 193-263 65-152 (254)
131 3adn_A Spermidine synthase; am 98.0 5.3E-06 1.8E-10 72.1 5.6 67 192-258 82-164 (294)
132 1dl5_A Protein-L-isoaspartate 98.0 8.3E-06 2.8E-10 71.4 6.9 82 183-265 66-158 (317)
133 1o54_A SAM-dependent O-methylt 98.0 7.4E-06 2.5E-10 70.2 6.3 75 182-257 102-187 (277)
134 3njr_A Precorrin-6Y methylase; 98.0 1.1E-05 3.7E-10 66.1 7.0 74 184-260 47-131 (204)
135 3fpf_A Mtnas, putative unchara 98.0 5.5E-06 1.9E-10 71.9 5.3 69 191-260 120-197 (298)
136 3tfw_A Putative O-methyltransf 98.0 4.8E-06 1.6E-10 70.4 4.7 68 192-259 62-144 (248)
137 1l3i_A Precorrin-6Y methyltran 98.0 4.6E-06 1.6E-10 66.5 4.4 78 184-264 25-113 (192)
138 1ri5_A MRNA capping enzyme; me 98.0 6E-06 2E-10 70.9 5.3 71 192-263 63-145 (298)
139 1g6q_1 HnRNP arginine N-methyl 98.0 8.2E-06 2.8E-10 71.9 6.3 71 193-264 38-118 (328)
140 3p2e_A 16S rRNA methylase; met 98.0 8.7E-06 3E-10 67.9 6.1 55 193-247 24-89 (225)
141 3bgv_A MRNA CAP guanine-N7 met 98.0 1.9E-05 6.4E-10 68.8 8.5 95 166-264 9-127 (313)
142 3u81_A Catechol O-methyltransf 98.0 2.5E-06 8.6E-11 70.6 2.7 73 193-265 58-148 (221)
143 2ozv_A Hypothetical protein AT 98.0 9.2E-06 3.1E-10 69.2 6.3 68 191-258 34-122 (260)
144 2aot_A HMT, histamine N-methyl 98.0 6.8E-06 2.3E-10 70.9 5.5 75 193-267 52-151 (292)
145 2gpy_A O-methyltransferase; st 97.9 5.1E-06 1.7E-10 69.2 4.0 71 193-263 54-138 (233)
146 2esr_A Methyltransferase; stru 97.9 4.1E-06 1.4E-10 66.5 3.3 69 192-261 30-110 (177)
147 1xdz_A Methyltransferase GIDB; 97.9 4.2E-06 1.4E-10 70.2 3.4 70 191-260 68-150 (240)
148 1o9g_A RRNA methyltransferase; 97.9 1.2E-05 4.1E-10 67.7 6.0 73 193-265 51-182 (250)
149 1i9g_A Hypothetical protein RV 97.9 1.4E-05 4.9E-10 68.2 6.6 74 183-257 90-177 (280)
150 3r0q_C Probable protein argini 97.9 1.3E-05 4.4E-10 72.0 6.5 74 191-265 61-143 (376)
151 2avn_A Ubiquinone/menaquinone 97.9 8.7E-06 3E-10 69.0 5.1 71 193-265 54-128 (260)
152 3gdh_A Trimethylguanosine synt 97.9 3.1E-06 1.1E-10 70.7 2.2 72 193-266 78-159 (241)
153 3frh_A 16S rRNA methylase; met 97.9 8.5E-06 2.9E-10 68.5 4.8 73 191-266 103-183 (253)
154 3m33_A Uncharacterized protein 97.9 1.2E-05 4E-10 66.8 5.6 64 193-258 48-118 (226)
155 2fhp_A Methylase, putative; al 97.9 9.2E-06 3.2E-10 64.8 4.7 70 192-262 43-127 (187)
156 3g89_A Ribosomal RNA small sub 97.9 6.6E-06 2.3E-10 69.7 4.1 69 192-260 79-160 (249)
157 1iy9_A Spermidine synthase; ro 97.9 1.2E-05 3.9E-10 69.2 5.5 68 193-260 75-157 (275)
158 1zq9_A Probable dimethyladenos 97.9 1.3E-05 4.6E-10 69.2 5.9 74 182-258 18-100 (285)
159 3tma_A Methyltransferase; thum 97.9 1.3E-05 4.6E-10 71.2 5.9 76 182-258 193-279 (354)
160 3eey_A Putative rRNA methylase 97.9 1.2E-05 4.2E-10 64.9 5.2 71 191-261 20-103 (197)
161 3mti_A RRNA methylase; SAM-dep 97.9 1.3E-05 4.5E-10 64.0 5.2 66 191-258 20-96 (185)
162 1p91_A Ribosomal RNA large sub 97.9 1.3E-05 4.6E-10 68.0 5.4 68 193-260 85-157 (269)
163 3orh_A Guanidinoacetate N-meth 97.9 5.4E-06 1.9E-10 69.5 2.8 64 193-257 60-134 (236)
164 3duw_A OMT, O-methyltransferas 97.9 4.5E-06 1.5E-10 68.9 2.2 68 193-260 58-142 (223)
165 3ftd_A Dimethyladenosine trans 97.9 2.8E-05 9.6E-10 65.9 7.1 78 182-261 21-104 (249)
166 3bwc_A Spermidine synthase; SA 97.8 6.5E-06 2.2E-10 71.8 3.1 75 192-266 94-184 (304)
167 3lcv_B Sisomicin-gentamicin re 97.8 1.8E-06 6.2E-11 73.4 -0.6 76 192-267 131-214 (281)
168 4e2x_A TCAB9; kijanose, tetron 97.8 5E-06 1.7E-10 75.4 2.0 83 181-267 96-187 (416)
169 2ipx_A RRNA 2'-O-methyltransfe 97.8 1.3E-05 4.5E-10 66.7 4.4 68 191-258 75-154 (233)
170 3lpm_A Putative methyltransfer 97.8 1.9E-05 6.5E-10 67.0 5.4 68 191-259 46-127 (259)
171 3tr6_A O-methyltransferase; ce 97.8 5.8E-06 2E-10 68.2 2.0 68 193-260 64-149 (225)
172 1r18_A Protein-L-isoaspartate( 97.8 2.2E-05 7.4E-10 65.1 5.4 75 191-265 82-177 (227)
173 3evz_A Methyltransferase; NYSG 97.8 3E-05 1E-09 64.1 6.2 74 191-265 53-137 (230)
174 1m6y_A S-adenosyl-methyltransf 97.8 2.2E-05 7.7E-10 68.4 5.6 65 182-247 16-86 (301)
175 2avd_A Catechol-O-methyltransf 97.8 6.9E-06 2.4E-10 68.0 2.2 68 192-259 68-153 (229)
176 1nt2_A Fibrillarin-like PRE-rR 97.8 3.9E-05 1.3E-09 63.1 6.7 68 191-258 55-133 (210)
177 2bm8_A Cephalosporin hydroxyla 97.8 2.7E-05 9.3E-10 65.3 5.7 66 194-259 82-160 (236)
178 3giw_A Protein of unknown func 97.8 2.9E-05 9.9E-10 66.6 5.8 75 193-267 78-176 (277)
179 1g8a_A Fibrillarin-like PRE-rR 97.8 5.1E-05 1.7E-09 62.7 7.2 68 191-258 71-150 (227)
180 3gru_A Dimethyladenosine trans 97.8 3.5E-05 1.2E-09 67.0 6.4 74 182-258 40-121 (295)
181 2pbf_A Protein-L-isoaspartate 97.8 4.5E-05 1.6E-09 62.9 6.7 74 191-264 78-175 (227)
182 1u2z_A Histone-lysine N-methyl 97.8 5.4E-05 1.9E-09 69.1 7.7 79 183-262 233-334 (433)
183 2nxc_A L11 mtase, ribosomal pr 97.8 1.1E-05 3.8E-10 68.4 2.9 67 192-261 119-194 (254)
184 3c3p_A Methyltransferase; NP_9 97.8 1.6E-05 5.3E-10 65.1 3.7 66 193-258 56-133 (210)
185 1zx0_A Guanidinoacetate N-meth 97.7 1.2E-05 4.2E-10 67.0 3.1 67 193-260 60-138 (236)
186 2b25_A Hypothetical protein; s 97.7 5.3E-05 1.8E-09 66.7 7.2 75 183-258 96-194 (336)
187 1wy7_A Hypothetical protein PH 97.7 4.6E-05 1.6E-09 61.9 6.3 72 193-266 49-127 (207)
188 2kw5_A SLR1183 protein; struct 97.7 3.2E-05 1.1E-09 62.6 5.3 61 196-258 32-101 (202)
189 1ws6_A Methyltransferase; stru 97.7 9.6E-06 3.3E-10 63.6 2.0 68 193-262 41-121 (171)
190 2nyu_A Putative ribosomal RNA 97.7 0.00012 4E-09 58.8 8.4 74 184-261 13-107 (196)
191 3p9n_A Possible methyltransfer 97.7 2.3E-05 7.8E-10 63.0 4.0 70 193-263 44-125 (189)
192 2o07_A Spermidine synthase; st 97.7 1.9E-05 6.6E-10 68.9 3.9 68 192-259 94-176 (304)
193 2frn_A Hypothetical protein PH 97.7 2.9E-05 9.9E-10 66.7 4.9 66 192-258 124-199 (278)
194 1xj5_A Spermidine synthase 1; 97.7 2.5E-05 8.5E-10 69.1 4.4 67 192-258 119-201 (334)
195 3fut_A Dimethyladenosine trans 97.7 4E-05 1.4E-09 65.7 5.6 77 183-263 38-121 (271)
196 3dr5_A Putative O-methyltransf 97.7 3.9E-05 1.3E-09 63.7 5.3 66 195-260 58-138 (221)
197 2cmg_A Spermidine synthase; tr 97.7 6.7E-05 2.3E-09 64.0 6.8 64 192-258 71-146 (262)
198 3tm4_A TRNA (guanine N2-)-meth 97.7 2.5E-05 8.6E-10 70.0 4.3 68 191-258 215-293 (373)
199 3a27_A TYW2, uncharacterized p 97.7 3.3E-05 1.1E-09 66.2 4.8 69 191-259 117-194 (272)
200 1uir_A Polyamine aminopropyltr 97.7 2E-05 6.8E-10 69.0 3.5 71 193-263 77-163 (314)
201 2hnk_A SAM-dependent O-methylt 97.7 1.2E-05 4.1E-10 67.2 2.0 55 193-247 60-123 (239)
202 1inl_A Spermidine synthase; be 97.7 2.4E-05 8.3E-10 67.9 3.9 66 193-258 90-170 (296)
203 2fpo_A Methylase YHHF; structu 97.7 2.9E-05 1E-09 63.3 4.1 68 194-262 55-133 (202)
204 2yvl_A TRMI protein, hypotheti 97.7 9.6E-05 3.3E-09 61.6 7.3 72 183-257 82-164 (248)
205 2pt6_A Spermidine synthase; tr 97.7 2E-05 7E-10 69.2 3.2 66 193-258 116-196 (321)
206 3uzu_A Ribosomal RNA small sub 97.7 1.8E-05 6.1E-10 68.3 2.7 67 183-250 33-105 (279)
207 1sui_A Caffeoyl-COA O-methyltr 97.6 1.7E-05 5.7E-10 67.1 2.4 67 193-259 79-164 (247)
208 1yub_A Ermam, rRNA methyltrans 97.6 3.9E-05 1.3E-09 64.6 4.5 75 182-259 19-100 (245)
209 1i1n_A Protein-L-isoaspartate 97.6 7.7E-05 2.6E-09 61.5 6.1 74 192-265 76-165 (226)
210 3r3h_A O-methyltransferase, SA 97.6 1E-05 3.4E-10 68.2 0.7 68 193-260 60-145 (242)
211 3bzb_A Uncharacterized protein 97.6 8.3E-05 2.8E-09 63.9 6.4 73 193-266 79-178 (281)
212 2h1r_A Dimethyladenosine trans 97.6 4.4E-05 1.5E-09 66.3 4.7 72 183-257 33-112 (299)
213 2ih2_A Modification methylase 97.6 9.8E-05 3.4E-09 66.7 7.2 71 184-258 31-105 (421)
214 2b2c_A Spermidine synthase; be 97.6 2.8E-05 9.5E-10 68.2 3.2 67 193-259 108-189 (314)
215 2i7c_A Spermidine synthase; tr 97.6 3.6E-05 1.2E-09 66.4 3.8 68 192-259 77-159 (283)
216 3c3y_A Pfomt, O-methyltransfer 97.6 2.3E-05 7.9E-10 65.7 2.5 67 192-258 69-154 (237)
217 2vdw_A Vaccinia virus capping 97.6 6.1E-05 2.1E-09 65.6 5.2 73 193-266 48-145 (302)
218 1mjf_A Spermidine synthase; sp 97.6 3.7E-05 1.3E-09 66.2 3.7 67 193-260 75-161 (281)
219 2ift_A Putative methylase HI07 97.6 3.5E-05 1.2E-09 62.8 3.4 68 194-262 54-136 (201)
220 3k0b_A Predicted N6-adenine-sp 97.6 9.1E-05 3.1E-09 66.9 6.2 76 182-258 191-314 (393)
221 3tqs_A Ribosomal RNA small sub 97.6 4.6E-05 1.6E-09 64.8 3.8 65 183-250 20-90 (255)
222 4azs_A Methyltransferase WBDD; 97.5 1.6E-05 5.4E-10 75.4 0.7 73 193-267 66-150 (569)
223 3ldu_A Putative methylase; str 97.5 8E-05 2.7E-09 67.1 5.2 75 182-257 185-307 (385)
224 3dou_A Ribosomal RNA large sub 97.5 0.00013 4.5E-09 59.0 5.9 62 181-248 13-74 (191)
225 3b73_A PHIH1 repressor-like pr 97.5 0.00017 5.7E-09 53.3 5.9 65 34-111 14-80 (111)
226 2i62_A Nicotinamide N-methyltr 97.5 2.4E-05 8.1E-10 65.9 1.2 71 192-263 55-169 (265)
227 3cbg_A O-methyltransferase; cy 97.5 3.2E-05 1.1E-09 64.5 1.9 68 193-260 72-157 (232)
228 2heo_A Z-DNA binding protein 1 97.5 0.0001 3.6E-09 49.3 4.1 55 35-101 12-66 (67)
229 3dmg_A Probable ribosomal RNA 97.5 0.0001 3.5E-09 66.3 5.2 69 193-263 233-310 (381)
230 4hc4_A Protein arginine N-meth 97.5 8.8E-05 3E-09 66.5 4.7 62 195-257 85-155 (376)
231 3ldg_A Putative uncharacterize 97.5 0.00015 5E-09 65.3 6.1 76 182-258 184-307 (384)
232 1uwv_A 23S rRNA (uracil-5-)-me 97.4 0.00023 7.9E-09 65.0 6.5 71 184-257 278-362 (433)
233 1y0u_A Arsenical resistance op 97.4 0.00021 7.1E-09 51.1 4.9 62 28-105 26-87 (96)
234 2oxt_A Nucleoside-2'-O-methylt 97.4 0.00033 1.1E-08 59.8 6.8 67 191-260 72-149 (265)
235 1qyr_A KSGA, high level kasuga 97.4 0.00014 4.9E-09 61.6 4.5 66 182-250 11-82 (252)
236 1ixk_A Methyltransferase; open 97.3 0.00022 7.7E-09 62.3 5.6 71 186-257 112-193 (315)
237 3o4f_A Spermidine synthase; am 97.3 0.00027 9.1E-09 61.2 5.8 66 192-257 82-163 (294)
238 2wa2_A Non-structural protein 97.3 0.00033 1.1E-08 60.2 6.2 66 191-260 80-157 (276)
239 2f8l_A Hypothetical protein LM 97.3 0.00019 6.4E-09 63.5 4.5 73 193-265 130-215 (344)
240 3sso_A Methyltransferase; macr 97.2 0.00012 4.2E-09 66.0 2.8 70 193-265 216-301 (419)
241 2g72_A Phenylethanolamine N-me 97.2 6.9E-05 2.4E-09 64.3 0.6 72 193-265 71-188 (289)
242 1qbj_A Protein (double-strande 97.2 0.00078 2.7E-08 46.7 5.7 68 32-107 9-76 (81)
243 3k6r_A Putative transferase PH 97.1 0.00037 1.3E-08 59.9 4.4 66 192-258 124-199 (278)
244 2yxl_A PH0851 protein, 450AA l 97.1 0.00087 3E-08 61.5 7.0 72 185-257 252-336 (450)
245 2p41_A Type II methyltransfera 97.1 0.00054 1.8E-08 59.7 5.3 68 191-261 80-158 (305)
246 2r6z_A UPF0341 protein in RSP 97.1 0.00029 9.8E-09 59.9 3.3 70 191-262 81-172 (258)
247 3ajd_A Putative methyltransfer 97.1 0.00041 1.4E-08 59.3 4.3 68 191-258 81-163 (274)
248 2a14_A Indolethylamine N-methy 97.0 7.6E-05 2.6E-09 63.3 -0.4 70 193-264 55-169 (263)
249 1qgp_A Protein (double strande 97.0 0.00092 3.1E-08 45.9 5.0 62 33-102 14-75 (77)
250 2qfm_A Spermine synthase; sper 97.0 0.00031 1.1E-08 62.5 3.0 65 193-258 188-274 (364)
251 4df3_A Fibrillarin-like rRNA/T 97.0 0.0017 5.9E-08 54.2 7.3 75 183-257 65-153 (233)
252 3id6_C Fibrillarin-like rRNA/T 97.0 0.0016 5.4E-08 54.4 7.1 68 191-258 74-153 (232)
253 1xmk_A Double-stranded RNA-spe 97.0 0.00092 3.1E-08 46.1 4.6 63 34-106 12-74 (79)
254 3pqk_A Biofilm growth-associat 96.9 0.001 3.5E-08 47.9 4.8 64 28-102 18-81 (102)
255 2kko_A Possible transcriptiona 96.9 0.0014 4.7E-08 47.9 5.3 58 34-102 26-83 (108)
256 4gqb_A Protein arginine N-meth 96.9 0.001 3.6E-08 63.3 5.7 98 154-256 322-433 (637)
257 2jjq_A Uncharacterized RNA met 96.9 0.0013 4.5E-08 59.9 6.1 62 193-257 290-359 (425)
258 3f6o_A Probable transcriptiona 96.9 0.00095 3.2E-08 49.6 4.3 67 27-104 12-78 (118)
259 3mq0_A Transcriptional repress 96.9 0.00069 2.4E-08 58.1 3.9 58 36-105 33-90 (275)
260 3jth_A Transcription activator 96.8 0.00087 3E-08 47.8 3.7 64 29-103 19-82 (98)
261 3cuo_A Uncharacterized HTH-typ 96.8 0.0015 5.3E-08 46.3 4.9 63 32-104 23-85 (99)
262 3df8_A Possible HXLR family tr 96.8 0.0017 5.9E-08 47.7 5.3 74 14-108 17-93 (111)
263 1ub9_A Hypothetical protein PH 96.8 0.0014 4.9E-08 46.5 4.6 68 28-105 11-81 (100)
264 2igt_A SAM dependent methyltra 96.8 0.00067 2.3E-08 59.8 3.2 63 193-257 153-231 (332)
265 1wg8_A Predicted S-adenosylmet 96.7 0.002 7E-08 55.1 5.9 64 181-247 11-77 (285)
266 2yx1_A Hypothetical protein MJ 96.7 0.0011 3.7E-08 58.5 4.3 63 193-258 195-265 (336)
267 2hzt_A Putative HTH-type trans 96.7 0.003 1E-07 45.9 6.1 53 49-108 26-82 (107)
268 1u2w_A CADC repressor, cadmium 96.7 0.0019 6.4E-08 48.3 4.9 67 27-103 36-102 (122)
269 2oqg_A Possible transcriptiona 96.7 0.0021 7.1E-08 47.0 5.1 62 33-105 21-82 (114)
270 3hp7_A Hemolysin, putative; st 96.7 0.0029 9.8E-08 54.6 6.4 80 183-264 75-164 (291)
271 2oyr_A UPF0341 protein YHIQ; a 96.7 0.001 3.5E-08 56.5 3.5 76 184-262 78-175 (258)
272 3f6v_A Possible transcriptiona 96.6 0.002 7E-08 50.1 4.6 69 26-105 51-119 (151)
273 1mkm_A ICLR transcriptional re 96.6 0.0032 1.1E-07 53.0 6.0 57 36-104 11-67 (249)
274 1tbx_A ORF F-93, hypothetical 96.6 0.0028 9.4E-08 45.2 4.8 65 35-109 10-78 (99)
275 1sqg_A SUN protein, FMU protei 96.5 0.0032 1.1E-07 57.3 6.2 71 186-257 240-321 (429)
276 1r1u_A CZRA, repressor protein 96.5 0.0023 7.9E-08 46.4 4.3 61 31-102 24-84 (106)
277 3ech_A MEXR, multidrug resista 96.5 0.0052 1.8E-07 46.5 6.5 91 8-108 7-105 (142)
278 4a5n_A Uncharacterized HTH-typ 96.5 0.0062 2.1E-07 46.2 6.7 76 14-109 16-95 (131)
279 2qww_A Transcriptional regulat 96.5 0.016 5.5E-07 44.2 9.2 65 35-109 43-112 (154)
280 3v97_A Ribosomal RNA large sub 96.5 0.0025 8.7E-08 61.7 5.5 76 182-258 180-310 (703)
281 3bdd_A Regulatory protein MARR 96.5 0.013 4.6E-07 43.9 8.6 65 34-108 32-99 (142)
282 1z7u_A Hypothetical protein EF 96.5 0.005 1.7E-07 45.1 5.9 60 38-108 27-90 (112)
283 2y75_A HTH-type transcriptiona 96.5 0.0042 1.4E-07 46.7 5.6 46 49-102 25-70 (129)
284 2jsc_A Transcriptional regulat 96.5 0.0021 7E-08 47.7 3.8 65 28-103 16-80 (118)
285 3ll7_A Putative methyltransfer 96.5 0.0011 3.7E-08 60.0 2.6 62 194-257 94-169 (410)
286 2xrn_A HTH-type transcriptiona 96.4 0.0026 9E-08 53.3 4.5 61 36-107 9-69 (241)
287 2okc_A Type I restriction enzy 96.4 0.0027 9.3E-08 58.0 4.8 78 184-262 163-264 (445)
288 2b78_A Hypothetical protein SM 96.3 0.001 3.4E-08 59.8 1.5 65 192-257 211-291 (385)
289 3r4k_A Transcriptional regulat 96.3 0.0014 4.6E-08 55.7 2.2 58 36-105 9-67 (260)
290 3ua3_A Protein arginine N-meth 96.3 0.0034 1.2E-07 60.2 5.1 96 154-256 377-500 (745)
291 2as0_A Hypothetical protein PH 96.3 0.0013 4.4E-08 59.2 2.0 64 193-257 217-295 (396)
292 2nyx_A Probable transcriptiona 96.3 0.019 6.5E-07 44.8 8.6 66 34-109 46-114 (168)
293 3m6w_A RRNA methylase; rRNA me 96.3 0.003 1E-07 58.1 4.4 66 191-257 99-176 (464)
294 1yyv_A Putative transcriptiona 96.3 0.0073 2.5E-07 45.7 5.8 75 14-108 25-103 (131)
295 1wxx_A TT1595, hypothetical pr 96.3 0.0013 4.3E-08 59.0 1.8 63 193-257 209-285 (382)
296 1on2_A Transcriptional regulat 96.3 0.0072 2.5E-07 45.9 5.9 50 49-108 21-70 (142)
297 3opn_A Putative hemolysin; str 96.2 0.0071 2.4E-07 50.3 6.1 48 183-232 27-76 (232)
298 2fsw_A PG_0823 protein; alpha- 96.2 0.0075 2.6E-07 43.7 5.5 75 14-108 15-93 (107)
299 1r1t_A Transcriptional repress 96.2 0.0045 1.6E-07 46.2 4.3 61 32-103 45-105 (122)
300 3f3x_A Transcriptional regulat 96.2 0.019 6.5E-07 43.4 7.8 65 34-109 38-105 (144)
301 2htj_A P fimbrial regulatory p 96.2 0.0092 3.2E-07 40.9 5.4 44 36-89 3-46 (81)
302 4auk_A Ribosomal RNA large sub 96.2 0.0059 2E-07 54.3 5.5 67 192-260 210-279 (375)
303 2wte_A CSA3; antiviral protein 96.2 0.0063 2.2E-07 51.1 5.4 65 34-110 153-217 (244)
304 1r7j_A Conserved hypothetical 96.2 0.0086 2.9E-07 42.7 5.4 48 51-109 21-68 (95)
305 2jt1_A PEFI protein; solution 96.1 0.0067 2.3E-07 41.5 4.3 43 38-89 9-56 (77)
306 3g3z_A NMB1585, transcriptiona 96.1 0.0098 3.3E-07 45.1 5.7 65 34-108 32-99 (145)
307 3k0l_A Repressor protein; heli 96.1 0.029 9.8E-07 43.4 8.5 65 35-109 48-115 (162)
308 2o0y_A Transcriptional regulat 96.1 0.0036 1.2E-07 53.0 3.5 58 36-105 26-83 (260)
309 1oyi_A Double-stranded RNA-bin 96.0 0.0079 2.7E-07 41.6 4.4 60 33-104 17-76 (82)
310 2nnn_A Probable transcriptiona 96.0 0.0095 3.2E-07 44.6 5.3 65 34-108 39-106 (140)
311 3tka_A Ribosomal RNA small sub 96.0 0.017 5.7E-07 50.7 7.4 66 181-247 46-115 (347)
312 2f2e_A PA1607; transcription f 96.0 0.012 4.1E-07 45.3 5.8 53 49-108 36-90 (146)
313 2g7u_A Transcriptional regulat 96.0 0.005 1.7E-07 52.0 3.9 62 36-110 17-78 (257)
314 3fm5_A Transcriptional regulat 95.9 0.025 8.7E-07 43.0 7.6 67 34-109 40-109 (150)
315 3e6m_A MARR family transcripti 95.9 0.041 1.4E-06 42.5 8.9 65 35-109 55-122 (161)
316 3cdh_A Transcriptional regulat 95.9 0.043 1.5E-06 41.9 9.0 64 35-108 45-111 (155)
317 1xn7_A Hypothetical protein YH 95.9 0.016 5.4E-07 39.7 5.6 42 38-89 7-48 (78)
318 1jgs_A Multiple antibiotic res 95.9 0.011 3.8E-07 44.2 5.3 64 35-108 36-102 (138)
319 2hr3_A Probable transcriptiona 95.9 0.015 5.1E-07 44.0 6.1 66 33-108 35-104 (147)
320 2k4m_A TR8_protein, UPF0146 pr 95.9 0.0066 2.2E-07 46.8 3.9 54 193-256 35-94 (153)
321 3c0k_A UPF0064 protein YCCW; P 95.9 0.0023 7.7E-08 57.6 1.4 65 193-258 220-300 (396)
322 3t8r_A Staphylococcus aureus C 95.8 0.011 3.9E-07 45.3 5.1 46 49-102 27-72 (143)
323 3lwf_A LIN1550 protein, putati 95.8 0.013 4.5E-07 45.9 5.5 46 49-102 43-88 (159)
324 3b5i_A S-adenosyl-L-methionine 95.8 0.039 1.3E-06 49.3 9.1 73 194-266 53-165 (374)
325 3bpv_A Transcriptional regulat 95.8 0.011 3.7E-07 44.2 4.8 64 35-108 31-97 (138)
326 2frx_A Hypothetical protein YE 95.8 0.013 4.6E-07 54.0 6.2 65 193-257 117-193 (479)
327 2ia2_A Putative transcriptiona 95.8 0.0049 1.7E-07 52.4 3.0 57 36-105 24-80 (265)
328 2rdp_A Putative transcriptiona 95.8 0.012 4.2E-07 44.7 5.1 64 35-108 44-110 (150)
329 2b9e_A NOL1/NOP2/SUN domain fa 95.7 0.017 5.9E-07 50.2 6.5 67 191-257 100-180 (309)
330 2k02_A Ferrous iron transport 95.7 0.013 4.4E-07 41.0 4.6 43 38-90 7-49 (87)
331 2fbi_A Probable transcriptiona 95.7 0.011 3.8E-07 44.4 4.6 65 34-108 37-104 (142)
332 2lnb_A Z-DNA-binding protein 1 95.7 0.015 5E-07 39.3 4.5 55 35-101 21-75 (80)
333 3oop_A LIN2960 protein; protei 95.7 0.0092 3.1E-07 45.1 4.1 66 33-108 37-105 (143)
334 1s3j_A YUSO protein; structura 95.7 0.054 1.8E-06 41.2 8.6 64 35-108 39-105 (155)
335 2gxg_A 146AA long hypothetical 95.7 0.033 1.1E-06 41.9 7.2 63 35-108 39-104 (146)
336 3bja_A Transcriptional regulat 95.7 0.01 3.5E-07 44.4 4.3 65 34-108 34-101 (139)
337 4hbl_A Transcriptional regulat 95.7 0.028 9.6E-07 42.8 6.8 65 34-108 42-109 (149)
338 3nrv_A Putative transcriptiona 95.6 0.012 4E-07 44.7 4.5 66 33-108 40-108 (148)
339 3bt7_A TRNA (uracil-5-)-methyl 95.6 0.0085 2.9E-07 53.3 4.3 51 195-247 215-272 (369)
340 3v97_A Ribosomal RNA large sub 95.6 0.0063 2.1E-07 58.9 3.5 63 194-257 540-615 (703)
341 2eth_A Transcriptional regulat 95.6 0.021 7.2E-07 43.7 5.8 66 33-108 44-112 (154)
342 3boq_A Transcriptional regulat 95.6 0.031 1.1E-06 42.9 6.8 65 35-108 49-116 (160)
343 2x4h_A Hypothetical protein SS 95.5 0.019 6.5E-07 43.3 5.4 49 49-108 30-78 (139)
344 2a61_A Transcriptional regulat 95.5 0.015 5.1E-07 43.8 4.8 65 34-108 34-101 (145)
345 2efj_A 3,7-dimethylxanthine me 95.5 0.034 1.2E-06 49.7 7.7 73 194-266 53-164 (384)
346 1lj9_A Transcriptional regulat 95.5 0.015 5.2E-07 43.8 4.7 64 35-108 31-97 (144)
347 2fbh_A Transcriptional regulat 95.5 0.017 6E-07 43.5 5.0 63 36-108 40-106 (146)
348 3m4x_A NOL1/NOP2/SUN family pr 95.5 0.0075 2.6E-07 55.3 3.3 71 186-257 99-181 (456)
349 2fu4_A Ferric uptake regulatio 95.4 0.016 5.6E-07 39.7 4.3 48 35-90 19-71 (83)
350 4dmg_A Putative uncharacterize 95.4 0.0074 2.5E-07 54.3 3.1 62 194-257 215-286 (393)
351 3deu_A Transcriptional regulat 95.4 0.016 5.4E-07 45.3 4.5 65 35-108 55-122 (166)
352 1bja_A Transcription regulator 95.4 0.029 1E-06 39.8 5.4 62 35-110 18-80 (95)
353 3bro_A Transcriptional regulat 95.4 0.025 8.4E-07 42.4 5.5 66 35-108 36-104 (141)
354 2dul_A N(2),N(2)-dimethylguano 95.4 0.016 5.4E-07 51.9 5.0 64 194-257 48-137 (378)
355 2zkz_A Transcriptional repress 95.3 0.016 5.4E-07 41.4 4.0 63 30-103 24-86 (99)
356 3eco_A MEPR; mutlidrug efflux 95.3 0.018 6.1E-07 43.2 4.5 68 34-109 32-102 (139)
357 3s2w_A Transcriptional regulat 95.3 0.016 5.4E-07 44.7 4.3 64 36-109 53-119 (159)
358 3cjn_A Transcriptional regulat 95.3 0.018 6.1E-07 44.4 4.6 65 34-108 53-120 (162)
359 4aik_A Transcriptional regulat 95.3 0.032 1.1E-06 42.9 6.0 65 35-108 33-100 (151)
360 2xyq_A Putative 2'-O-methyl tr 95.3 0.025 8.6E-07 48.7 5.9 60 191-258 61-130 (290)
361 1z91_A Organic hydroperoxide r 95.3 0.016 5.4E-07 43.9 4.1 67 34-110 41-110 (147)
362 3bj6_A Transcriptional regulat 95.3 0.11 3.9E-06 39.2 9.0 64 35-108 42-108 (152)
363 2frh_A SARA, staphylococcal ac 95.2 0.017 5.7E-07 43.1 4.1 66 35-108 39-107 (127)
364 3kp7_A Transcriptional regulat 95.2 0.083 2.8E-06 40.1 8.1 63 35-108 40-107 (151)
365 3tgn_A ADC operon repressor AD 95.2 0.021 7.2E-07 43.1 4.5 64 34-108 39-105 (146)
366 2pg4_A Uncharacterized protein 95.1 0.018 6.3E-07 40.5 3.8 62 38-108 20-83 (95)
367 3hsr_A HTH-type transcriptiona 95.1 0.032 1.1E-06 42.0 5.4 63 36-108 39-104 (140)
368 2qvo_A Uncharacterized protein 95.1 0.02 6.9E-07 40.4 3.9 51 50-108 30-81 (95)
369 1ylf_A RRF2 family protein; st 95.0 0.024 8.4E-07 43.6 4.6 61 26-102 13-73 (149)
370 3jw4_A Transcriptional regulat 95.0 0.058 2E-06 40.8 6.6 66 35-108 43-111 (148)
371 3u2r_A Regulatory protein MARR 95.0 0.049 1.7E-06 42.3 6.3 69 34-110 47-118 (168)
372 2ld4_A Anamorsin; methyltransf 95.0 0.0097 3.3E-07 46.6 2.1 60 191-266 10-79 (176)
373 2lkp_A Transcriptional regulat 94.9 0.028 9.5E-07 41.3 4.5 46 33-89 32-77 (119)
374 1sfx_A Conserved hypothetical 94.9 0.025 8.5E-07 40.2 4.1 47 34-90 21-67 (109)
375 2bv6_A MGRA, HTH-type transcri 94.9 0.023 8E-07 42.7 4.0 66 34-109 38-106 (142)
376 2h09_A Transcriptional regulat 94.9 0.046 1.6E-06 42.0 5.8 57 39-108 46-102 (155)
377 1q1h_A TFE, transcription fact 94.9 0.046 1.6E-06 39.5 5.4 46 35-89 20-65 (110)
378 2pex_A Transcriptional regulat 94.8 0.033 1.1E-06 42.4 4.9 67 35-111 49-118 (153)
379 2fa5_A Transcriptional regulat 94.8 0.031 1.1E-06 43.0 4.7 64 35-108 51-117 (162)
380 3k69_A Putative transcription 94.8 0.032 1.1E-06 43.7 4.6 46 49-102 27-72 (162)
381 3nqo_A MARR-family transcripti 94.7 0.099 3.4E-06 41.6 7.6 71 32-110 40-113 (189)
382 3axs_A Probable N(2),N(2)-dime 94.6 0.019 6.3E-07 51.7 3.3 66 193-258 52-132 (392)
383 3r0a_A Putative transcriptiona 94.6 0.025 8.6E-07 42.1 3.4 47 35-90 28-75 (123)
384 2obp_A Putative DNA-binding pr 94.5 0.064 2.2E-06 38.2 5.2 53 49-108 35-88 (96)
385 2p4w_A Transcriptional regulat 94.5 0.047 1.6E-06 44.4 5.1 67 28-105 10-81 (202)
386 3p8z_A Mtase, non-structural p 94.4 0.078 2.7E-06 44.1 6.2 76 181-257 67-150 (267)
387 3c6k_A Spermine synthase; sper 94.3 0.027 9.2E-07 50.2 3.6 54 193-247 205-273 (381)
388 3u1d_A Uncharacterized protein 94.2 0.092 3.1E-06 40.6 5.9 69 34-110 30-107 (151)
389 1xd7_A YWNA; structural genomi 94.1 0.051 1.8E-06 41.6 4.3 60 25-102 7-66 (145)
390 3hrs_A Metalloregulator SCAR; 94.0 0.077 2.6E-06 43.4 5.4 51 49-109 19-69 (214)
391 2fbk_A Transcriptional regulat 94.0 0.025 8.4E-07 44.7 2.4 67 35-108 71-140 (181)
392 2fxa_A Protease production reg 93.8 0.061 2.1E-06 43.7 4.6 64 35-108 50-116 (207)
393 2qlz_A Transcription factor PF 93.8 0.024 8.2E-07 47.2 2.0 68 27-105 6-79 (232)
394 4b8x_A SCO5413, possible MARR- 93.7 0.041 1.4E-06 42.0 3.1 53 49-108 50-105 (147)
395 1p6r_A Penicillinase repressor 93.6 0.054 1.8E-06 36.9 3.3 47 34-90 10-60 (82)
396 2px2_A Genome polyprotein [con 93.5 0.035 1.2E-06 46.8 2.5 73 182-257 63-145 (269)
397 1i4w_A Mitochondrial replicati 93.2 0.23 8E-06 43.8 7.5 54 194-247 59-116 (353)
398 1rjd_A PPM1P, carboxy methyl t 93.1 0.097 3.3E-06 45.9 4.9 75 193-267 97-210 (334)
399 1okr_A MECI, methicillin resis 93.0 0.056 1.9E-06 39.7 2.8 62 35-108 12-80 (123)
400 1m6e_X S-adenosyl-L-methionnin 93.0 0.11 3.9E-06 45.9 5.2 75 192-266 50-154 (359)
401 2pn6_A ST1022, 150AA long hypo 92.9 0.095 3.2E-06 40.0 4.1 45 34-88 4-48 (150)
402 2cfx_A HTH-type transcriptiona 92.8 0.12 4E-06 39.3 4.4 45 34-88 6-50 (144)
403 1p4x_A Staphylococcal accessor 92.8 0.13 4.4E-06 43.2 5.0 66 35-108 160-228 (250)
404 2w25_A Probable transcriptiona 92.7 0.12 3.9E-06 39.6 4.4 45 34-88 8-52 (150)
405 2k4b_A Transcriptional regulat 92.7 0.099 3.4E-06 37.4 3.6 50 35-90 37-86 (99)
406 3khk_A Type I restriction-modi 92.6 0.076 2.6E-06 49.8 3.6 64 195-258 246-336 (544)
407 3gcz_A Polyprotein; flavivirus 92.5 0.12 4E-06 44.1 4.4 44 181-225 79-122 (282)
408 2p5v_A Transcriptional regulat 92.5 0.13 4.4E-06 39.9 4.4 45 34-88 11-55 (162)
409 2o03_A Probable zinc uptake re 92.5 0.21 7E-06 37.4 5.4 60 32-100 10-75 (131)
410 2cyy_A Putative HTH-type trans 92.4 0.12 4.2E-06 39.5 4.2 45 34-88 8-52 (151)
411 2dbb_A Putative HTH-type trans 92.4 0.15 5.2E-06 38.9 4.6 45 34-88 10-54 (151)
412 2cg4_A Regulatory protein ASNC 92.1 0.14 4.7E-06 39.2 4.1 45 34-88 9-53 (152)
413 2esh_A Conserved hypothetical 92.1 0.27 9.4E-06 36.0 5.6 68 30-108 10-90 (118)
414 2e1c_A Putative HTH-type trans 92.1 0.16 5.4E-06 40.0 4.5 46 33-88 27-72 (171)
415 3l7w_A Putative uncharacterize 92.1 0.25 8.6E-06 35.6 5.2 65 33-108 9-81 (108)
416 2ar0_A M.ecoki, type I restric 92.0 0.11 3.9E-06 48.5 4.1 74 184-258 161-268 (541)
417 3lkd_A Type I restriction-modi 92.0 0.082 2.8E-06 49.5 3.2 66 193-258 221-304 (542)
418 3i4p_A Transcriptional regulat 92.0 0.14 4.9E-06 39.7 4.1 45 34-88 4-48 (162)
419 3s1s_A Restriction endonucleas 92.0 0.15 5.1E-06 49.9 4.9 66 192-257 320-405 (878)
420 1uly_A Hypothetical protein PH 92.0 0.17 5.8E-06 40.7 4.6 52 28-90 15-66 (192)
421 4esf_A PADR-like transcription 91.9 0.46 1.6E-05 34.8 6.6 69 29-108 7-86 (117)
422 4fx0_A Probable transcriptiona 91.9 0.13 4.6E-06 39.2 3.8 65 36-108 36-105 (148)
423 2ia0_A Putative HTH-type trans 91.8 0.17 5.9E-06 39.7 4.4 45 34-88 18-62 (171)
424 1i1g_A Transcriptional regulat 91.7 0.17 5.7E-06 38.1 4.1 44 35-88 6-49 (141)
425 2vn2_A DNAD, chromosome replic 91.7 0.22 7.4E-06 37.2 4.6 33 50-89 51-83 (128)
426 2fe3_A Peroxide operon regulat 91.6 0.31 1.1E-05 37.1 5.6 59 34-101 23-87 (145)
427 3cta_A Riboflavin kinase; stru 91.6 0.2 6.8E-06 41.2 4.8 55 49-110 26-80 (230)
428 1ku9_A Hypothetical protein MJ 91.4 0.18 6.2E-06 37.8 4.0 45 37-90 30-74 (152)
429 2d1h_A ST1889, 109AA long hypo 91.3 0.14 4.9E-06 36.1 3.2 34 49-89 35-68 (109)
430 1sfu_A 34L protein; protein/Z- 91.2 0.66 2.2E-05 31.2 6.1 46 49-102 28-73 (75)
431 4g6q_A Putative uncharacterize 91.0 0.1 3.6E-06 41.5 2.4 70 27-107 17-92 (182)
432 3evf_A RNA-directed RNA polyme 91.0 0.22 7.5E-06 42.3 4.4 42 183-225 65-106 (277)
433 1cf7_A Protein (transcription 90.9 0.22 7.5E-06 33.7 3.6 42 49-100 29-71 (76)
434 2dk5_A DNA-directed RNA polyme 90.7 0.26 9E-06 34.5 3.9 47 35-89 22-68 (91)
435 2v79_A DNA replication protein 90.5 0.35 1.2E-05 36.5 4.8 34 49-89 50-83 (135)
436 1hsj_A Fusion protein consisti 90.5 0.23 8E-06 45.2 4.6 65 36-108 407-474 (487)
437 1fx7_A Iron-dependent represso 90.5 0.25 8.4E-06 40.7 4.3 48 52-109 26-73 (230)
438 3lkz_A Non-structural protein 90.1 0.42 1.4E-05 41.0 5.4 75 182-257 84-166 (321)
439 3f8b_A Transcriptional regulat 90.1 0.9 3.1E-05 33.1 6.7 70 28-108 7-89 (116)
440 1zkd_A DUF185; NESG, RPR58, st 90.1 1.2 4.2E-05 39.7 8.7 62 163-229 55-123 (387)
441 1j5y_A Transcriptional regulat 90.0 0.41 1.4E-05 38.0 5.1 59 33-104 21-80 (187)
442 3k2z_A LEXA repressor; winged 89.9 0.34 1.2E-05 38.8 4.6 41 40-89 16-56 (196)
443 3hhh_A Transcriptional regulat 89.5 0.79 2.7E-05 33.5 5.9 70 28-108 8-88 (116)
444 3mwm_A ZUR, putative metal upt 89.5 0.49 1.7E-05 35.8 4.9 61 32-101 13-79 (139)
445 2zig_A TTHA0409, putative modi 89.4 0.54 1.8E-05 40.2 5.7 49 182-234 226-275 (297)
446 2xvc_A ESCRT-III, SSO0910; cel 89.4 0.44 1.5E-05 30.1 3.7 45 35-88 12-56 (59)
447 1xma_A Predicted transcription 89.3 0.34 1.2E-05 37.0 3.9 66 32-108 40-118 (145)
448 2xig_A Ferric uptake regulatio 89.2 0.77 2.6E-05 35.1 6.0 61 32-101 26-92 (150)
449 1v4r_A Transcriptional repress 89.2 0.17 5.7E-06 36.0 2.0 51 29-89 15-67 (102)
450 1yg2_A Gene activator APHA; vi 88.8 0.59 2E-05 36.8 5.1 62 34-106 3-77 (179)
451 2qq9_A Diphtheria toxin repres 88.6 0.59 2E-05 38.3 5.2 51 50-110 24-74 (226)
452 1jhg_A Trp operon repressor; c 88.4 0.64 2.2E-05 33.2 4.5 42 32-84 44-85 (101)
453 2g9w_A Conserved hypothetical 88.2 0.55 1.9E-05 35.2 4.4 48 34-90 10-61 (138)
454 3elk_A Putative transcriptiona 88.2 0.39 1.3E-05 35.2 3.5 72 28-110 9-91 (117)
455 2qy6_A UPF0209 protein YFCK; s 88.2 0.13 4.5E-06 43.3 1.0 33 193-225 60-104 (257)
456 1z6r_A MLC protein; transcript 87.3 0.71 2.4E-05 41.1 5.3 50 30-89 13-62 (406)
457 4esb_A Transcriptional regulat 86.6 0.73 2.5E-05 33.6 4.1 63 35-108 11-84 (115)
458 2p8t_A Hypothetical protein PH 86.4 0.88 3E-05 36.7 4.8 49 49-108 29-77 (200)
459 2ek5_A Predicted transcription 86.4 1.1 3.9E-05 33.2 5.2 42 49-99 26-68 (129)
460 1sd4_A Penicillinase repressor 86.4 0.53 1.8E-05 34.3 3.3 47 34-90 11-61 (126)
461 3tqn_A Transcriptional regulat 86.0 0.79 2.7E-05 33.2 4.0 43 49-100 31-74 (113)
462 3i71_A Ethanolamine utilizatio 85.9 2.7 9.4E-05 26.5 5.8 50 40-102 10-59 (68)
463 1mzb_A Ferric uptake regulatio 85.9 1.4 4.7E-05 33.0 5.5 60 34-101 19-84 (136)
464 3eld_A Methyltransferase; flav 85.4 0.91 3.1E-05 38.9 4.7 35 191-225 79-113 (300)
465 2pjp_A Selenocysteine-specific 85.0 0.66 2.2E-05 34.1 3.2 43 49-101 19-61 (121)
466 1p4x_A Staphylococcal accessor 84.9 0.83 2.9E-05 38.1 4.2 65 36-108 37-104 (250)
467 3by6_A Predicted transcription 84.5 0.99 3.4E-05 33.4 4.0 43 49-100 33-76 (126)
468 3neu_A LIN1836 protein; struct 84.0 1.4 4.9E-05 32.4 4.7 43 49-100 35-78 (125)
469 2hoe_A N-acetylglucosamine kin 83.8 0.87 3E-05 40.2 4.1 55 25-90 12-66 (380)
470 2b0l_A GTP-sensing transcripti 83.5 1.1 3.7E-05 31.9 3.8 34 49-89 41-75 (102)
471 2vxz_A Pyrsv_GP04; viral prote 83.5 1.3 4.5E-05 33.8 4.3 44 36-90 14-57 (165)
472 4ham_A LMO2241 protein; struct 83.3 1.2 4E-05 33.3 4.0 43 49-100 36-79 (134)
473 2o0m_A Transcriptional regulat 82.7 0.25 8.4E-06 43.4 0.0 61 34-108 21-81 (345)
474 3maj_A DNA processing chain A; 82.7 1 3.4E-05 40.1 3.9 52 36-101 331-382 (382)
475 2qlz_A Transcription factor PF 82.5 3 0.0001 34.3 6.6 52 37-102 169-220 (232)
476 2uyo_A Hypothetical protein ML 82.4 1.3 4.5E-05 38.2 4.5 73 193-267 102-195 (310)
477 1bia_A BIRA bifunctional prote 82.3 1.6 5.6E-05 37.7 5.1 56 35-102 7-62 (321)
478 2yu3_A DNA-directed RNA polyme 82.0 1.3 4.5E-05 31.2 3.6 48 34-89 38-85 (95)
479 2py6_A Methyltransferase FKBM; 81.1 2.2 7.6E-05 38.2 5.7 41 192-232 225-268 (409)
480 2wk1_A NOVP; transferase, O-me 81.1 3 0.0001 35.4 6.2 33 193-225 106-143 (282)
481 3c7j_A Transcriptional regulat 79.9 2 6.9E-05 35.3 4.6 41 49-98 48-88 (237)
482 3ri2_A Transcriptional regulat 79.7 4 0.00014 30.0 5.8 71 26-108 14-93 (123)
483 1z05_A Transcriptional regulat 79.2 2.2 7.6E-05 38.2 5.1 50 30-89 36-85 (429)
484 2dql_A PEX protein; circadian 78.7 4.3 0.00015 29.3 5.6 60 38-108 27-99 (115)
485 3lmm_A Uncharacterized protein 78.6 2.7 9.2E-05 39.6 5.5 60 35-108 432-496 (583)
486 2w57_A Ferric uptake regulatio 78.5 2.2 7.6E-05 32.5 4.2 59 35-101 19-83 (150)
487 2w48_A Sorbitol operon regulat 78.3 2.2 7.5E-05 36.6 4.6 33 49-88 20-52 (315)
488 2p5k_A Arginine repressor; DNA 77.6 3.5 0.00012 25.8 4.4 36 39-87 11-51 (64)
489 3cuq_B Vacuolar protein-sortin 77.3 4.2 0.00014 33.1 5.7 35 49-90 167-201 (218)
490 3eyy_A Putative iron uptake re 77.3 3.1 0.00011 31.4 4.7 58 34-101 20-83 (145)
491 3sxy_A Transcriptional regulat 76.6 2.1 7E-05 34.5 3.7 42 49-99 34-75 (218)
492 1hw1_A FADR, fatty acid metabo 76.4 2.4 8.3E-05 34.5 4.2 44 49-101 29-73 (239)
493 3iht_A S-adenosyl-L-methionine 76.1 13 0.00043 28.8 7.6 58 165-225 15-72 (174)
494 1g60_A Adenine-specific methyl 74.4 5.2 0.00018 33.2 5.7 48 181-232 202-250 (260)
495 3rkx_A Biotin-[acetyl-COA-carb 73.5 3.3 0.00011 35.8 4.4 58 35-102 5-62 (323)
496 2co5_A Viral protein F93; vira 73.5 5.8 0.0002 27.9 5.0 54 50-108 28-81 (99)
497 3bwg_A Uncharacterized HTH-typ 73.3 5 0.00017 32.9 5.3 43 49-100 27-70 (239)
498 3edp_A LIN2111 protein; APC883 73.3 4.8 0.00016 33.0 5.2 44 49-101 31-75 (236)
499 2hs5_A Putative transcriptiona 73.2 3.1 0.00011 34.1 4.0 41 49-98 50-90 (239)
500 1lva_A Selenocysteine-specific 72.7 6.5 0.00022 32.7 5.9 54 36-100 144-197 (258)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.9e-48 Score=348.88 Aligned_cols=247 Identities=20% Similarity=0.300 Sum_probs=220.1
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 10 EANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
++++++.|+++++||+.+++|++|++|||||.|.+.+ +|+|++|||+++|++ ++ .+.|+||+|+++|+|.+
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~~------~~-~l~rlLr~L~~~gll~~ 75 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRAS------AH-GTELLLDICVSLKLLKV 75 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 4588999999999999999999999999999999864 699999999999997 77 99999999999999985
Q ss_pred eeecCCCeEecChhchh-hhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhC---CCchhccccCcch
Q 024350 90 SFVDGQRLYSLAPVSKY-FVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHG---MHIYDYLGVDSSF 165 (269)
Q Consensus 90 ~~~~~~~~y~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g---~~~~~~~~~~p~~ 165 (269)
..+.+.+.|++|+.++. +.++. |.++++++.+. .+..++.|.+|++++++++++|...+| .++|+++.++|+.
T Consensus 76 ~~~~~~~~y~~t~~s~~~l~~~~--~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (353)
T 4a6d_A 76 ETRGGKAFYRNTELSSDYLTTVS--PTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGE 152 (353)
T ss_dssp EEETTEEEEEECHHHHHHHSTTS--TTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred eccCccceeeCCHHHHHHhhcCC--chHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHH
Confidence 43444568999999885 45554 67889888775 356789999999999999999998888 4689999999999
Q ss_pred HHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC------CCCce
Q 024350 166 NDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS------YPGID 239 (269)
Q Consensus 166 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~------~~ri~ 239 (269)
...|+++|...+....+.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++ .+||+
T Consensus 153 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~ 231 (353)
T 4a6d_A 153 RLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231 (353)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCcee
Confidence 999999999998888889999999 99999999999999999999999999999999999999987754 38999
Q ss_pred EEecccCCc-CCCCcEEEeccccccCCCCCC
Q 024350 240 HVGGDLFES-VPKADTIFMKVICVCYLNSLS 269 (269)
Q Consensus 240 ~~~gD~~~~-~P~gD~~~l~~iLhd~~d~~~ 269 (269)
+++||||++ .|.+|+|++++|||||+|++|
T Consensus 232 ~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~ 262 (353)
T 4a6d_A 232 FQEGDFFKDPLPEADLYILARVLHDWADGKC 262 (353)
T ss_dssp EEESCTTTSCCCCCSEEEEESSGGGSCHHHH
T ss_pred eecCccccCCCCCceEEEeeeecccCCHHHH
Confidence 999999985 445699999999999999864
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.1e-45 Score=334.13 Aligned_cols=258 Identities=46% Similarity=0.845 Sum_probs=229.5
Q ss_pred chHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCC-CCCCchhHHHHHHHHHHHHHhc
Q 024350 6 DQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSY 84 (269)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~-~~~~~~~~~~~l~rlL~~L~~~ 84 (269)
..+|+++++..+++++++++.+++|++|++|||||+|.+.| ++|+|++|||+++|+ . +|+++. .++||||+|++.
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~--~~~~~~-~l~rlLr~L~~~ 88 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA--NPEAPD-MVDRILRLLASY 88 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT--CTTHHH-HHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC--Cccchh-hHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999863 258999999999997 2 243345 899999999999
Q ss_pred Ccccceeec---C--CCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhcc
Q 024350 85 NALHCSFVD---G--QRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYL 159 (269)
Q Consensus 85 g~l~~~~~~---~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~ 159 (269)
|+|++.... + ++.|++|+.++.|+.+. .+.++++++.+...+.++..|.+|++++++|+++|+..+|.++|+|+
T Consensus 89 g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~ 167 (364)
T 3p9c_A 89 NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE-DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYH 167 (364)
T ss_dssp TSEEEEEEECSSSCEEEEEEECGGGGGSSCCT-TSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHH
T ss_pred CCEEEeccccCCCCcCCEEecCHHHHHHcCCC-CCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHH
Confidence 999953110 1 37899999999888765 36689998887666778999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCce
Q 024350 160 GVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGID 239 (269)
Q Consensus 160 ~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~ 239 (269)
..+|+..+.|+++|...+....+.+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+
T Consensus 168 ~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~ 247 (364)
T 3p9c_A 168 GTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVT 247 (364)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEE
T ss_pred HhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeE
Confidence 99999999999999998887778888888767788999999999999999999999999999999999999999889999
Q ss_pred EEecccCCcCCCCcEEEeccccccCCCCC
Q 024350 240 HVGGDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 240 ~~~gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
++.+||++++|++|+|++++|||+|+|++
T Consensus 248 ~~~~D~~~~~p~~D~v~~~~vlh~~~d~~ 276 (364)
T 3p9c_A 248 HVGGDMFKEVPSGDTILMKWILHDWSDQH 276 (364)
T ss_dssp EEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred EEeCCcCCCCCCCCEEEehHHhccCCHHH
Confidence 99999999999779999999999999865
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=5.6e-45 Score=330.04 Aligned_cols=257 Identities=51% Similarity=0.910 Sum_probs=227.4
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhc-CCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCc
Q 024350 8 EEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKA-GPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA 86 (269)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~-g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~ 86 (269)
++.++++..+++++++++.+++|++|++|||||+|.+. |+++|+|++|||+++|.. +|+++. .++|+||+|++.|+
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~-~l~rlLr~L~~~gl 92 (368)
T 3reo_A 16 SSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPV-MLDRVLRLLASYSV 92 (368)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHH-HHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchh-hHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999986 544689999999999842 343346 89999999999999
Q ss_pred ccceeec-C----CCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhcccc
Q 024350 87 LHCSFVD-G----QRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGV 161 (269)
Q Consensus 87 l~~~~~~-~----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 161 (269)
|++.... + +++|++|+.++.|+.+. .+.++++++.+..++.++..|.+|++++++|+++|+..+|.++|+|+..
T Consensus 93 l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~ 171 (368)
T 3reo_A 93 VTYTLRELPSGKVERLYGLAPVCKFLTKNE-DGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGT 171 (368)
T ss_dssp EEEEEEECTTSCEEEEEEECTTHHHHSCCT-TSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTT
T ss_pred eEEecccCCCCcccceeCcCHHHHHHhCCC-CCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhh
Confidence 9953100 1 36899999999887665 3678999988766677889999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCceEE
Q 024350 162 DSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHV 241 (269)
Q Consensus 162 ~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~~~ 241 (269)
+|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++
T Consensus 172 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 251 (368)
T 3reo_A 172 DHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHL 251 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEE
Confidence 99999999999999888777888888876778899999999999999999999999999999999999999988999999
Q ss_pred ecccCCcCCCCcEEEeccccccCCCCC
Q 024350 242 GGDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 242 ~gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
.+|+++++|++|+|+++++||+|+|++
T Consensus 252 ~~d~~~~~p~~D~v~~~~vlh~~~~~~ 278 (368)
T 3reo_A 252 GGDMFDGVPKGDAIFIKWICHDWSDEH 278 (368)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGBCHHH
T ss_pred ecCCCCCCCCCCEEEEechhhcCCHHH
Confidence 999999999779999999999999865
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=3.7e-42 Score=309.21 Aligned_cols=246 Identities=20% Similarity=0.241 Sum_probs=220.9
Q ss_pred cchHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhc
Q 024350 5 ADQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSY 84 (269)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~ 84 (269)
+++-..+++..++++++++++.+++|++|+++|||+.|.+ +|+|++|||+++|++ ++ .++|+||+|++.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~~------~~-~l~rlLr~l~~~ 82 (348)
T 3lst_A 14 GGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGTD------AD-ALRRVLRLLAVR 82 (348)
T ss_dssp --CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHT
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhC
Confidence 3445567888999999999999999999999999999986 699999999999997 77 999999999999
Q ss_pred CcccceeecCCCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcc
Q 024350 85 NALHCSFVDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSS 164 (269)
Q Consensus 85 g~l~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~ 164 (269)
|+|+ + +++.|++|+.++.|.+++ +.++++++.++..+..++.|.+|++++++|+++|...+|.++|+|+.++|+
T Consensus 83 g~l~---~-~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 156 (348)
T 3lst_A 83 DVVR---E-SDGRFALTDKGAALRSDS--PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAE 156 (348)
T ss_dssp TSEE---E-ETTEEEECTTTGGGSTTS--SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHH
T ss_pred CCEE---e-cCCEEecCHHHHHHhcCC--CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHH
Confidence 9999 5 578999999999887665 568888887765666789999999999999999999999899999999999
Q ss_pred hHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-----CCCce
Q 024350 165 FNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-----YPGID 239 (269)
Q Consensus 165 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-----~~ri~ 239 (269)
..+.|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++...+. .+||+
T Consensus 157 ~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~ 235 (348)
T 3lst_A 157 VEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWK 235 (348)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEE
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeE
Confidence 9999999999998888888999998 98899999999999999999999999999999999999873321 26899
Q ss_pred EEecccCCcCCCCcEEEeccccccCCCCC
Q 024350 240 HVGGDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 240 ~~~gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
++.+|+++++|..|+|+++++||+|+|++
T Consensus 236 ~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 264 (348)
T 3lst_A 236 VVEGDFLREVPHADVHVLKRILHNWGDED 264 (348)
T ss_dssp EEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred EEecCCCCCCCCCcEEEEehhccCCCHHH
Confidence 99999998889449999999999999874
No 5
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=4.1e-42 Score=309.92 Aligned_cols=253 Identities=27% Similarity=0.443 Sum_probs=223.0
Q ss_pred chHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcC
Q 024350 6 DQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN 85 (269)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g 85 (269)
+.+|..++...+++++++++.+++|++|+++|||+.|+..| +|+|++|||+++|++ |.+++ .++|+||+|++.|
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~~---~~~~~-~l~rlLr~L~~~g 76 (358)
T 1zg3_A 3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKLH---PSKVN-ILHRFLRLLTHNG 76 (358)
T ss_dssp TTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTCC---TTTHH-HHHHHHHHHHHTT
T ss_pred chHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCCC---CcchH-HHHHHHHHHhhCC
Confidence 34678899999999999999999999999999999999853 599999999999994 22256 9999999999999
Q ss_pred cccceee--cC-----CCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhC--CchhhhhhCCCch
Q 024350 86 ALHCSFV--DG-----QRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEG--GIAFNKAHGMHIY 156 (269)
Q Consensus 86 ~l~~~~~--~~-----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~ 156 (269)
+|++... .+ ++.|++|+.++.|++++ +.++++++.+..++.+++.|.+|+++++++ .++|+..+|.++|
T Consensus 77 ll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~ 154 (358)
T 1zg3_A 77 FFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK--PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFW 154 (358)
T ss_dssp SEEEEEECCSSSSCCCEEEEEECHHHHTTCTTS--TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHH
T ss_pred cEEEecccccccCCCCCCEEeCCHHHHHHhCCC--CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHH
Confidence 9994200 02 47999999999888776 568999988766677889999999999998 7889999999999
Q ss_pred hccccCcchHH--HHHHHHHhhchhhHHHHHHhc--cCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhC
Q 024350 157 DYLGVDSSFND--VFSNGMLSHTSIVMEKVLESY--KGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNA 232 (269)
Q Consensus 157 ~~~~~~p~~~~--~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a 232 (269)
+++.++|+..+ .|+.+|...+.... .+++.+ + |++..+|||||||+|.++..+++++|+++++++|+|.+++.+
T Consensus 155 ~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 232 (358)
T 1zg3_A 155 DFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNL 232 (358)
T ss_dssp HHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSC
T ss_pred HHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhc
Confidence 99999999999 99999999887665 788888 4 777789999999999999999999999999999999999988
Q ss_pred CCCCCceEEecccCCcCCCCcEEEeccccccCCCCC
Q 024350 233 PSYPGIDHVGGDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 233 ~~~~ri~~~~gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
++.++|+++.+|+++++|+.|+|+++++||+|+|++
T Consensus 233 ~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~ 268 (358)
T 1zg3_A 233 TGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 268 (358)
T ss_dssp CCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred ccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHH
Confidence 887889999999999888779999999999999864
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.6e-41 Score=305.43 Aligned_cols=252 Identities=25% Similarity=0.427 Sum_probs=224.4
Q ss_pred chHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcC
Q 024350 6 DQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN 85 (269)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g 85 (269)
+.+|..++..++++++.+++.+++|++++++|||+.|+..| +++|++|||+++|++ |.+++ .++|+||+|++.|
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~~---~~~~~-~l~rlLr~L~~~g 82 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVP---SSKIG-NVRRLMRYLAHNG 82 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTCC---GGGHH-HHHHHHHHHHHTT
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCcC---CCChH-HHHHHHHHHHhCC
Confidence 45788999999999999999999999999999999999853 599999999999994 33256 9999999999999
Q ss_pred cccceeecCCCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHh-hCCchhhhhhCCCchhccccCcc
Q 024350 86 ALHCSFVDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQIL-EGGIAFNKAHGMHIYDYLGVDSS 164 (269)
Q Consensus 86 ~l~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~p~ 164 (269)
+|++. +.+++.|++|+.++.|++++ +.++++++.+..++.++..|.+|++.++ +|+++|...+|.++|+++.++|+
T Consensus 83 ll~~~-~~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 159 (352)
T 1fp2_A 83 FFEII-TKEEESYALTVASELLVRGS--DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPE 159 (352)
T ss_dssp SEEEE-ESSSEEEEECHHHHTTSTTS--SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHH
T ss_pred eEEEe-cCCCCeEeCCHHHHHHhCCC--CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChH
Confidence 99942 01368999999999888776 5688999887666677899999999999 88899999999999999999999
Q ss_pred hHHHHHHHHHhhchhhHHHHHHhc--cCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCceEEe
Q 024350 165 FNDVFSNGMLSHTSIVMEKVLESY--KGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVG 242 (269)
Q Consensus 165 ~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~~~~ 242 (269)
..+.|+.+|...+....+. ++.| + +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.
T Consensus 160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 237 (352)
T 1fp2_A 160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237 (352)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEE
T ss_pred HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEe
Confidence 9999999999988776666 7777 5 7778999999999999999999999999999999999999998888899999
Q ss_pred cccCCcCCCCcEEEeccccccCCCCC
Q 024350 243 GDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 243 gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
+|+++++|..|+|+++++||+|+|++
T Consensus 238 ~d~~~~~p~~D~v~~~~~lh~~~d~~ 263 (352)
T 1fp2_A 238 GDMFTSIPNADAVLLKYILHNWTDKD 263 (352)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred ccccCCCCCccEEEeehhhccCCHHH
Confidence 99999888779999999999999864
No 7
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=9.6e-42 Score=308.87 Aligned_cols=246 Identities=18% Similarity=0.306 Sum_probs=223.2
Q ss_pred chHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcC
Q 024350 6 DQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN 85 (269)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g 85 (269)
++....+...++++++.+++.+++|++|+++||||.|++ +|+|++|||+++|++ ++ .++|+||+|++.|
T Consensus 31 ~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~~------~~-~l~rlLr~L~~~g 99 (369)
T 3gwz_A 31 GTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGAH------EQ-TLRRLLRLLATVG 99 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHhCC
Confidence 445556778899999999999999999999999999986 699999999999997 77 9999999999999
Q ss_pred cccceeecCCCe-EecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcc
Q 024350 86 ALHCSFVDGQRL-YSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSS 164 (269)
Q Consensus 86 ~l~~~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~ 164 (269)
+|+ +++++. |++|+.++.|.++. +.++++++.++..+..+..|.+|++.+++++++|...+|.++|+|+.++|+
T Consensus 100 ~l~---~~~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~ 174 (369)
T 3gwz_A 100 VFD---DLGHDDLFAQNALSAVLLPDP--ASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPK 174 (369)
T ss_dssp SSE---ECSSTTEEECCHHHHTTSCCT--TCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHH
T ss_pred CEE---EeCCCceEecCHHHHHHhcCC--chhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHH
Confidence 999 555788 99999999887665 567888888765656789999999999999999999999899999999999
Q ss_pred hHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCC
Q 024350 165 FNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPG 237 (269)
Q Consensus 165 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~r 237 (269)
..+.|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|
T Consensus 175 ~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~ 253 (369)
T 3gwz_A 175 ARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADR 253 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCc
Confidence 9999999999988887888999998 88889999999999999999999999999999999999988764 378
Q ss_pred ceEEecccCCcCCCC-cEEEeccccccCCCCC
Q 024350 238 IDHVGGDLFESVPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 238 i~~~~gD~~~~~P~g-D~~~l~~iLhd~~d~~ 268 (269)
|+++.+|+++++|.+ |+|+++++||+|+|++
T Consensus 254 v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~ 285 (369)
T 3gwz_A 254 CEILPGDFFETIPDGADVYLIKHVLHDWDDDD 285 (369)
T ss_dssp EEEEECCTTTCCCSSCSEEEEESCGGGSCHHH
T ss_pred eEEeccCCCCCCCCCceEEEhhhhhccCCHHH
Confidence 999999999988865 9999999999999864
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=7.3e-41 Score=303.32 Aligned_cols=257 Identities=39% Similarity=0.720 Sum_probs=208.7
Q ss_pred ccchHHHhhhHHHHH--HHHHhhHHHHHHHHHHhcChhHHHHhcCCCCC---CCHHHHHHhCCC---CCCCchhHHHHHH
Q 024350 4 IADQEEEANNFSYAM--ELASAIVLPAAMQAVVELDVFEIITKAGPGAK---LSVSEIVAQIPL---KDNNPEAAAMMLD 75 (269)
Q Consensus 4 ~~~~~~~~~~~~~l~--~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~---~s~~eLA~~~~~---~~~~~~~~~~~l~ 75 (269)
++..++..++...++ +++++++.+++|++|+++|||+.|++.| +| +|++|||+++|+ + |..++ .++
T Consensus 13 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~---~~~~~-~l~ 86 (372)
T 1fp1_D 13 ISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQH---SDLPN-RLD 86 (372)
T ss_dssp ------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCC---TTHHH-HHH
T ss_pred cCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCC---CcChH-HHH
Confidence 455667788888999 9999999999999999999999999853 25 999999999999 3 21167 999
Q ss_pred HHHHHHHhcCccccee---ecC--CCeEecChhchhhhcCCCCC-CChHHHHHhhcChhhHhhhhhhHHHHhhC-Cchhh
Q 024350 76 RVLRLLVSYNALHCSF---VDG--QRLYSLAPVSKYFVRNNQNG-ASLRPYMALSLDKVLMDGWFRLKGQILEG-GIAFN 148 (269)
Q Consensus 76 rlL~~L~~~g~l~~~~---~~~--~~~y~~t~~s~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 148 (269)
|+||+|++.|+|++.. +.+ ++.|++|+.++.|++++ + .++++++.+..++.+++.|.+|++.++++ +++|+
T Consensus 87 rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~ 164 (372)
T 1fp1_D 87 RMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE--SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFK 164 (372)
T ss_dssp HHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTC--TTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-----
T ss_pred HHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCC--CCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhH
Confidence 9999999999999421 001 36999999999888775 4 57889888766667789999999999999 88999
Q ss_pred hhhCCCchhccccCcchHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHH
Q 024350 149 KAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYV 228 (269)
Q Consensus 149 ~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~v 228 (269)
..+|.++|+++.++|+..+.|+.+|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+
T Consensus 165 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 244 (372)
T 1fp1_D 165 NVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV 244 (372)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHH
Confidence 99999999999999999999999999988877778888886577889999999999999999999999999999999999
Q ss_pred HHhCCCCCCceEEecccCCcCCCCcEEEeccccccCCCCC
Q 024350 229 IKNAPSYPGIDHVGGDLFESVPKADTIFMKVICVCYLNSL 268 (269)
Q Consensus 229 v~~a~~~~ri~~~~gD~~~~~P~gD~~~l~~iLhd~~d~~ 268 (269)
++.+++.++|+++.+|+++++|..|+|+++++||+|+|++
T Consensus 245 ~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~ 284 (372)
T 1fp1_D 245 IENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEK 284 (372)
T ss_dssp HTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHH
T ss_pred HHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHH
Confidence 9999888899999999999888789999999999999864
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.4e-41 Score=303.39 Aligned_cols=237 Identities=22% Similarity=0.329 Sum_probs=213.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC
Q 024350 15 SYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG 94 (269)
Q Consensus 15 ~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~ 94 (269)
..+++++.|++.+++|++|+++||||.|.+ +|+|++|||+++|++ ++ .++|+||+|++.|++. +++
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~~------~~-~l~rlLr~l~~~gl~~---~~~ 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGAH------AD-SLDRLLRHLVAVGLFT---RDG 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---ECT
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHhCCcEE---ecC
Confidence 457899999999999999999999999986 699999999999997 77 9999999999999999 556
Q ss_pred CCeEecChhchhhhcCCCCCCChHHHHHhhcChhhH-hhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHHHHHHHH
Q 024350 95 QRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLM-DGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNGM 173 (269)
Q Consensus 95 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~~f~~~m 173 (269)
++.|.+|+.++.|.++. +.++.+++.+...+..+ ..|.+|++++++++++|...+|.++|+++.++|+..+.|+.+|
T Consensus 73 ~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDH--AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp TSBEEECTTGGGGSTTC--TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCC--chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 79999999999887665 56788888765444456 8999999999999999999999889999999999999999999
Q ss_pred HhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccC
Q 024350 174 LSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLF 246 (269)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~ 246 (269)
...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++
T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 9988776677788888 88889999999999999999999999999999999999988764 278999999999
Q ss_pred CcCCC-CcEEEeccccccCCCCC
Q 024350 247 ESVPK-ADTIFMKVICVCYLNSL 268 (269)
Q Consensus 247 ~~~P~-gD~~~l~~iLhd~~d~~ 268 (269)
+++|. .|+|+++++||+|+|++
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~ 252 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLS 252 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHH
T ss_pred CCCCCCCcEEEEehhhccCCHHH
Confidence 98885 49999999999999863
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.2e-40 Score=292.66 Aligned_cols=236 Identities=20% Similarity=0.312 Sum_probs=213.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccccee
Q 024350 12 NNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (269)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 91 (269)
.....+++++++++.+++|++++++|||+.|.+ +|+|++|||+++|++ ++ .++|+||+|++.|+|+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~Lr~L~~~g~l~--- 72 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGSD------AE-RIHRLMRLLVAFEIFQ--- 72 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCceE---
Confidence 466889999999999999999999999999976 699999999999997 77 9999999999999999
Q ss_pred ecCCCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHHHHHH
Q 024350 92 VDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSN 171 (269)
Q Consensus 92 ~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~~f~~ 171 (269)
+.+++.|++|+.++.|. ++ |.++++++.+...+.. ..|.+|++.+++++++|+..+|.++|+++.++|+..+.|++
T Consensus 73 ~~~~~~y~~t~~s~~l~-~~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 73 GDTRDGYANTPTSHLLR-DV--EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp EETTTEEEECHHHHTTS-SS--TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred ecCCCeEecCHHHHHHh-CC--CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 55568999999999888 55 5688998877655444 89999999999999999998999999999999999999999
Q ss_pred HHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------CCceEEecc
Q 024350 172 GMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------PGIDHVGGD 244 (269)
Q Consensus 172 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ri~~~~gD 244 (269)
+| ..+....+.+++.++ +++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+++.+|
T Consensus 149 ~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 225 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred HH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence 99 877777788888888 888 99999999999999999999999999999999998877652 689999999
Q ss_pred cCCcCCCC-cEEEeccccccCCCCC
Q 024350 245 LFESVPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 245 ~~~~~P~g-D~~~l~~iLhd~~d~~ 268 (269)
+++++|++ |+|+++++||+|+|++
T Consensus 226 ~~~~~~~~~D~v~~~~vl~~~~~~~ 250 (334)
T 2ip2_A 226 MLQEVPSNGDIYLLSRIIGDLDEAA 250 (334)
T ss_dssp TTTCCCSSCSEEEEESCGGGCCHHH
T ss_pred CCCCCCCCCCEEEEchhccCCCHHH
Confidence 99988875 9999999999998764
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2.2e-39 Score=292.80 Aligned_cols=242 Identities=19% Similarity=0.268 Sum_probs=203.6
Q ss_pred cchHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhc
Q 024350 5 ADQEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSY 84 (269)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~ 84 (269)
.++.+..++..+++++++|++.+++|++++++||||.|+..+ +|+|++|||+++|++ ++ .++|+||+|++.
T Consensus 7 ~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~~------~~-~l~rlLr~l~~~ 77 (363)
T 3dp7_A 7 KEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGLT------RY-AAQVLLEASLTI 77 (363)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhC
Confidence 355678899999999999999999999999999999999854 699999999999997 77 999999999999
Q ss_pred CcccceeecCCCeEecChhchhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhC--CCchhccccC
Q 024350 85 NALHCSFVDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHG--MHIYDYLGVD 162 (269)
Q Consensus 85 g~l~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~ 162 (269)
|+|+ +. +++|++|+.++.|++++ + ...++.+. .+..++.|.+|+++++++++++...+| .++|+++.++
T Consensus 78 g~l~---~~-~~~y~~t~~s~~L~~~~--~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~ 148 (363)
T 3dp7_A 78 GTIL---LE-EDRYVLAKAGWFLLNDK--M--ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQL 148 (363)
T ss_dssp TSEE---EE-TTEEEECHHHHHHHHCH--H--HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGS
T ss_pred CCeE---ec-CCEEecccchHHhhCCC--c--ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhC
Confidence 9998 43 68999999999888765 2 22233332 356789999999999999998888888 7899999999
Q ss_pred cchHH----HHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC---
Q 024350 163 SSFND----VFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY--- 235 (269)
Q Consensus 163 p~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~--- 235 (269)
|+..+ .|+++|..... ..++..+. .++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 149 ~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 224 (363)
T 3dp7_A 149 PEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAG 224 (363)
T ss_dssp CHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHh
Confidence 98766 36666655432 23444444 356789999999999999999999999999999999999877642
Q ss_pred ----CCceEEecccCCc---CCCC-cEEEeccccccCCCCC
Q 024350 236 ----PGIDHVGGDLFES---VPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 236 ----~ri~~~~gD~~~~---~P~g-D~~~l~~iLhd~~d~~ 268 (269)
+||+++.+|++++ +|++ |+|+++++||+|+|++
T Consensus 225 ~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~ 265 (363)
T 3dp7_A 225 LSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEE 265 (363)
T ss_dssp CTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHH
T ss_pred cCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHH
Confidence 6899999999995 6754 9999999999999864
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=8.1e-38 Score=282.92 Aligned_cols=241 Identities=17% Similarity=0.304 Sum_probs=214.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 11 ANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
++...++++++.+++.+++|++++++|||+.|.. +++|++|||+++|++ ++ .+.|+||+|++.|+|+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~~------~~-~l~r~Lr~L~~~Gll~-- 80 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDTH------PQ-ALSRLVRHLTVVGVLE-- 80 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE--
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhCCCEE--
Confidence 4567789999999999999999999999999965 699999999999997 77 9999999999999999
Q ss_pred eecCCC--eEecChhchhhhcCCCCCCChHHHHHhhcChhhH-hhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHH
Q 024350 91 FVDGQR--LYSLAPVSKYFVRNNQNGASLRPYMALSLDKVLM-DGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFND 167 (269)
Q Consensus 91 ~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~ 167 (269)
+.+++ .|++|+.++.|.++. +.++++++.+...+..+ ..|.+|.+.+++++++|...+|.++|+++..+|+..+
T Consensus 81 -~~~~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 81 -GGEKQGRPLRPTRLGMLLADGH--PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALAD 157 (374)
T ss_dssp -CCCC-CCCCEECTTGGGGSTTC--TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred -EeCCCCeEEEEChHHHhhcCCC--cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHH
Confidence 43466 999999999888776 66888888775444456 8999999999999999998899999999999999999
Q ss_pred HHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------CCceE
Q 024350 168 VFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------PGIDH 240 (269)
Q Consensus 168 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ri~~ 240 (269)
.|+++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 236 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 236 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEE
Confidence 9999999887776778888888 888899999999999999999999999999999999999877642 58999
Q ss_pred EecccCCcCCCC-cEEEeccccccCCCCC
Q 024350 241 VGGDLFESVPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 241 ~~gD~~~~~P~g-D~~~l~~iLhd~~d~~ 268 (269)
+.+|+++++|.+ |+|+++++||+|+|++
T Consensus 237 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~ 265 (374)
T 1qzz_A 237 AEGDFFKPLPVTADVVLLSFVLLNWSDED 265 (374)
T ss_dssp EECCTTSCCSCCEEEEEEESCGGGSCHHH
T ss_pred EeCCCCCcCCCCCCEEEEeccccCCCHHH
Confidence 999999988875 9999999999999863
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=5e-37 Score=276.52 Aligned_cols=240 Identities=20% Similarity=0.342 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccccee
Q 024350 12 NNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (269)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~ 91 (269)
....++++++.+++.+++|.+++++|||+.|.. +++|++|||+++|++ ++ .+.|+|++|++.|+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~~~--- 83 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTR------PE-ALLRLIRHLVAIGLLE--- 83 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEE---
Confidence 346788999999999999999999999999965 699999999999997 77 9999999999999999
Q ss_pred ecCCCeEecChhchhhhcCCCCCCChHHHHHhhcChh-hHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHHHHH
Q 024350 92 VDGQRLYSLAPVSKYFVRNNQNGASLRPYMALSLDKV-LMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFS 170 (269)
Q Consensus 92 ~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~~f~ 170 (269)
+.+++.|++|+.++.|.++. +.++++++.+...+. .+..|.+|.+.++++.++|+..+|.++|+++..+|+..+.|.
T Consensus 84 ~~~~g~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~ 161 (360)
T 1tw3_A 84 EDAPGEFVPTEVGELLADDH--PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFD 161 (360)
T ss_dssp EEETTEEEECTTGGGGSTTS--TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHH
T ss_pred ecCCCeEEeCHHHHHHhcCC--chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHH
Confidence 44578999999999888776 678888877654333 578999999999999999988899999999999999999999
Q ss_pred HHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------CCceEEec
Q 024350 171 NGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------PGIDHVGG 243 (269)
Q Consensus 171 ~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ri~~~~g 243 (269)
.+|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+++.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 240 (360)
T 1tw3_A 162 SLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240 (360)
T ss_dssp HHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 9999888777778888888 888899999999999999999999999999999999999877642 58999999
Q ss_pred ccCCcCCCC-cEEEeccccccCCCCC
Q 024350 244 DLFESVPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 244 D~~~~~P~g-D~~~l~~iLhd~~d~~ 268 (269)
|+++++|.+ |+|+++++||+|+|++
T Consensus 241 d~~~~~~~~~D~v~~~~vl~~~~~~~ 266 (360)
T 1tw3_A 241 DFFEPLPRKADAIILSFVLLNWPDHD 266 (360)
T ss_dssp CTTSCCSSCEEEEEEESCGGGSCHHH
T ss_pred CCCCCCCCCccEEEEcccccCCCHHH
Confidence 999988875 9999999999999763
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=4.4e-36 Score=270.55 Aligned_cols=232 Identities=18% Similarity=0.276 Sum_probs=203.5
Q ss_pred hHHHhhhHHHHHHHHH-hhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcC
Q 024350 7 QEEEANNFSYAMELAS-AIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN 85 (269)
Q Consensus 7 ~~~~~~~~~~l~~~~~-~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g 85 (269)
.+|..++..+++++++ +++.+++|++++++|||+.|.+ +++|++|||+++|++ ++ .++|+||+|++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~~------~~-~l~rlLr~L~~~g 92 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PP-RLEMLLETLRQMR 92 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTT
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCcC------hH-HHHHHHHHHHhCC
Confidence 4567888899999996 8999999999999999999986 599999999999997 77 9999999999999
Q ss_pred cccceeecCCCeEecChhch-hhhcCCCCC---CChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhcccc
Q 024350 86 ALHCSFVDGQRLYSLAPVSK-YFVRNNQNG---ASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGV 161 (269)
Q Consensus 86 ~l~~~~~~~~~~y~~t~~s~-~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~ 161 (269)
+|+ +. ++.|++|+.+. +|.++. + .++++++.+. ....++.|.+|+++++++.+ |+++..
T Consensus 93 ll~---~~-~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~ 155 (359)
T 1x19_A 93 VIN---LE-DGKWSLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVP 155 (359)
T ss_dssp SEE---EE-TTEEEECHHHHHHSSSSC--SBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSC
T ss_pred CeE---ee-CCeEecCHHHHHHhcCCC--CCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------Cccccc
Confidence 999 44 46999999744 666665 5 6788888775 35678999999999987754 677788
Q ss_pred Ccc---hHHHHHHHHHhhch-hhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC---
Q 024350 162 DSS---FNDVFSNGMLSHTS-IVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS--- 234 (269)
Q Consensus 162 ~p~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~--- 234 (269)
+|+ ..+.|..+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 234 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA 234 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHH
Confidence 899 89999999999988 77788899998 88889999999999999999999999999999999999987764
Q ss_pred ----CCCceEEecccCC-cCCCCcEEEeccccccCCCC
Q 024350 235 ----YPGIDHVGGDLFE-SVPKADTIFMKVICVCYLNS 267 (269)
Q Consensus 235 ----~~ri~~~~gD~~~-~~P~gD~~~l~~iLhd~~d~ 267 (269)
.+||+++.+|+++ +.|++|+|+++++||+|+|+
T Consensus 235 ~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~ 272 (359)
T 1x19_A 235 EKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQ 272 (359)
T ss_dssp HTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHH
T ss_pred hcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHH
Confidence 2679999999998 56656999999999999974
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-35 Score=262.62 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=204.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeec
Q 024350 14 FSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD 93 (269)
Q Consensus 14 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~ 93 (269)
..++++++.+++.+++|++++++|||+.|++ +++|++|||+++|++ ++ .++|+||+|++.|+|+ +
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~l~---~- 71 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQTS------ER-GMRMLCDYLVIIGFMT---K- 71 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---E-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCCC------ch-HHHHHHHHHHhcCCeE---e-
Confidence 4679999999999999999999999999997 599999999999997 77 9999999999999998 4
Q ss_pred CCCeEecChhc-hhhhcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHHHHHHH
Q 024350 94 GQRLYSLAPVS-KYFVRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNG 172 (269)
Q Consensus 94 ~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~~f~~~ 172 (269)
.++.|++|+.+ +.|.+++ +.++++++.+...+..++.|.+|++.++++.++|. + |+++.++|+..+.|..+
T Consensus 72 ~~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 143 (335)
T 2r3s_A 72 QAEGYRLTSDSAMFLDRQS--KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKA 143 (335)
T ss_dssp ETTEEEECHHHHHHTCTTS--TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHH
T ss_pred cCCEEecCHHHHHHhccCC--cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHH
Confidence 36899999999 5777665 56788888776555678999999999999988764 3 88888899999999999
Q ss_pred HHhhchhhHHHHHHhccCC--CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------CCceEEec
Q 024350 173 MLSHTSIVMEKVLESYKGF--EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------PGIDHVGG 243 (269)
Q Consensus 173 m~~~~~~~~~~~~~~~~~~--~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ri~~~~g 243 (269)
|..........+++.++ + ++..+|+|||||+|.++..+++++|+.+++++|++.+++.+++. +||+++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 222 (335)
T 2r3s_A 144 MSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAG 222 (335)
T ss_dssp SGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred HHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEec
Confidence 99988877778888888 7 77899999999999999999999999999999999888877652 58999999
Q ss_pred ccCC-cCCCC-cEEEeccccccCCCCC
Q 024350 244 DLFE-SVPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 244 D~~~-~~P~g-D~~~l~~iLhd~~d~~ 268 (269)
|+++ ++|++ |+|+++++||+|++++
T Consensus 223 d~~~~~~~~~~D~v~~~~~l~~~~~~~ 249 (335)
T 2r3s_A 223 SAFEVDYGNDYDLVLLPNFLHHFDVAT 249 (335)
T ss_dssp CTTTSCCCSCEEEEEEESCGGGSCHHH
T ss_pred ccccCCCCCCCcEEEEcchhccCCHHH
Confidence 9998 67766 9999999999998753
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=2.2e-35 Score=265.02 Aligned_cols=234 Identities=15% Similarity=0.247 Sum_probs=194.6
Q ss_pred hHHHhhhHHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCc
Q 024350 7 QEEEANNFSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA 86 (269)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~ 86 (269)
+.+.++....+++++.+++.+++|++|+++|||+.|.. |+|++|||+++|++ ++ .++|+||+|++.|+
T Consensus 18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~~------~~-~l~rlLr~L~~~gl 85 (352)
T 3mcz_A 18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGMV------EG-KAAILLHALAALGL 85 (352)
T ss_dssp SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCcC------hH-HHHHHHHHHHHCCC
Confidence 34445556669999999999999999999999999953 89999999999997 77 99999999999999
Q ss_pred ccceeecCCCeEecChhchhh-hcCCCCCCChHHHHHhhcChhhHhhhhhhHHHHhhCCch-hhhhhCCCchhccccCcc
Q 024350 87 LHCSFVDGQRLYSLAPVSKYF-VRNNQNGASLRPYMALSLDKVLMDGWFRLKGQILEGGIA-FNKAHGMHIYDYLGVDSS 164 (269)
Q Consensus 87 l~~~~~~~~~~y~~t~~s~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~p~ 164 (269)
|+ +. ++.|.+|+.++.+ .++. +.+++.++.+. ...++.|.+|++.+++|.+. |... .+...+|+
T Consensus 86 l~---~~-~~~y~~t~~s~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~ 151 (352)
T 3mcz_A 86 LT---KE-GDAFRNTALTERYLTTTS--ADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTR 151 (352)
T ss_dssp EE---EE-TTEEEECHHHHHHHSTTC--TTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHH
T ss_pred eE---ec-CCeeecCHHHHhhccCCC--hhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHH
Confidence 99 54 4789999999854 4444 67888887654 34688999999999988764 2322 12356888
Q ss_pred hHHHHHHHHHhhchhhHHHHHHhccCCCC-ccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------C
Q 024350 165 FNDVFSNGMLSHTSIVMEKVLESYKGFEH-VKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------P 236 (269)
Q Consensus 165 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ 236 (269)
..+.|..+|...... +..+++.++ +++ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +
T Consensus 152 ~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (352)
T 3mcz_A 152 ARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGG 229 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCC
Confidence 899999999984332 347888888 777 899999999999999999999999999999999988876642 6
Q ss_pred CceEEecccCCc---CCCC-cEEEeccccccCCCCC
Q 024350 237 GIDHVGGDLFES---VPKA-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 237 ri~~~~gD~~~~---~P~g-D~~~l~~iLhd~~d~~ 268 (269)
||+++.+|++++ .|++ |+|+++++||+|+|++
T Consensus 230 ~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~ 265 (352)
T 3mcz_A 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDARE 265 (352)
T ss_dssp GEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHH
T ss_pred ceEEEeCCcccCcccCCCCccEEEEecccccCCHHH
Confidence 899999999995 5565 9999999999999863
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.26 E-value=2.7e-11 Score=109.21 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=118.3
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch-hhhcCCCCCC
Q 024350 37 DVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK-YFVRNNQNGA 115 (269)
Q Consensus 37 glfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~-~l~~~~~~~~ 115 (269)
++|..| . +|.|+.|||+.+|++ ++ .++++|+.|.+.|+++ .. ++ |++|+.+. ++.... +.
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~~------~~-~v~~~L~~l~~~gll~---~~-~~-~~lt~~~~~~l~~~~--~~ 107 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEEP------LP-LVVAILESLNELGYVT---FE-DG-VKLTEKGEELVAEYG--IG 107 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEE---CS-SS-SEECHHHHHHHHHHT--CC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCCC------hH-HHHHHHHHHhhCCcEE---EC-CC-EEECHHHHHHHHhcC--cc
Confidence 789999 4 489999999999997 77 9999999999999998 33 25 99999876 444322 11
Q ss_pred ChHHHH-Hhhc-----ChhhHhhhhhhHHHHhhCCchhhhhhCCCchhccccCcchHHHHHHHHHhhchhhHHHHHHhcc
Q 024350 116 SLRPYM-ALSL-----DKVLMDGWFRLKGQILEGGIAFNKAHGMHIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYK 189 (269)
Q Consensus 116 ~~~~~~-~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~ 189 (269)
.....+ .... ...+...|..+.+.++....+. . .|+-....++. .....+ ......+
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~l---------~~~~~~~ 170 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-H-----EFDQAYVTPET--TVARVI---------LMHTRGD 170 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCCCCC-G-----GGTCCCBCHHH--HHHHHH---------HHHHTTC
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-h-----hcCCeecCHHH--HHHHHH---------HHhhcCC
Confidence 111111 0000 0111223445556555332211 1 11100001111 111110 0011112
Q ss_pred CCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC----C-cEEEe
Q 024350 190 GFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK----A-DTIFM 257 (269)
Q Consensus 190 ~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~----g-D~~~l 257 (269)
. ...+|+||| |+|.++..+++..|+.+++++|+ |.+++.++++ ++|+++.+|+++++|. . |++++
T Consensus 171 -~-~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 171 -L-ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp -S-TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred -C-CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 2 347999999 99999999999999999999998 8999877653 4899999999986552 4 99999
Q ss_pred ccccc
Q 024350 258 KVICV 262 (269)
Q Consensus 258 ~~iLh 262 (269)
...+|
T Consensus 248 ~~p~~ 252 (373)
T 2qm3_A 248 DPPET 252 (373)
T ss_dssp CCCSS
T ss_pred CCCCc
Confidence 76654
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.85 E-value=6.3e-09 Score=86.88 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=68.1
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCC-cCCCC-cEEE
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFE-SVPKA-DTIF 256 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~-~~P~g-D~~~ 256 (269)
++..+.......+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+.+ +.+.. |+++
T Consensus 35 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 114 (234)
T 3dtn_A 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVV 114 (234)
T ss_dssp HHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEE
T ss_pred HHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEE
Confidence 344443223558999999999999999999999999999998 777776654 3589999999988 55544 9999
Q ss_pred eccccccCCCC
Q 024350 257 MKVICVCYLNS 267 (269)
Q Consensus 257 l~~iLhd~~d~ 267 (269)
+..+||.++++
T Consensus 115 ~~~~l~~~~~~ 125 (234)
T 3dtn_A 115 SALSIHHLEDE 125 (234)
T ss_dssp EESCGGGSCHH
T ss_pred EeCccccCCHH
Confidence 99999999764
No 19
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.84 E-value=1.4e-08 Score=86.58 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cCCC-C-cEEEec
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SVPK-A-DTIFMK 258 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~P~-g-D~~~l~ 258 (269)
.+++.++ .....+|||||||+|.++..+++ |+.+++++|+ |..++.++...+++++.+|+.+ ++|. . |++++.
T Consensus 25 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (261)
T 3ege_A 25 AIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI 101 (261)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred HHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence 4455555 55678999999999999999997 7889999997 7888888877799999999987 6664 4 999999
Q ss_pred cccccCCC
Q 024350 259 VICVCYLN 266 (269)
Q Consensus 259 ~iLhd~~d 266 (269)
++||.++|
T Consensus 102 ~~l~~~~~ 109 (261)
T 3ege_A 102 LAIHHFSH 109 (261)
T ss_dssp SCGGGCSS
T ss_pred chHhhccC
Confidence 99999876
No 20
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.83 E-value=8e-09 Score=89.13 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=64.9
Q ss_pred CccEEEEeCCCc---hHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCCc------------CC-C
Q 024350 193 HVKKLVDVGGGL---GATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFES------------VP-K 251 (269)
Q Consensus 193 ~~~~vvDvGGG~---G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~~------------~P-~ 251 (269)
+..+|||||||+ |.++..+.+.+|+.+++.+|+ |.+++.+++ .++++++.+|++++ ++ .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888999999999998 899887764 37899999999862 33 2
Q ss_pred C-cEEEeccccccCCCCC
Q 024350 252 A-DTIFMKVICVCYLNSL 268 (269)
Q Consensus 252 g-D~~~l~~iLhd~~d~~ 268 (269)
. |++++..+||.++|++
T Consensus 157 ~~d~v~~~~vlh~~~d~~ 174 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDV 174 (274)
T ss_dssp SCCEEEETTTGGGSCTTT
T ss_pred CCEEEEEechhhhCCcHH
Confidence 3 9999999999999863
No 21
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.82 E-value=2.5e-09 Score=91.75 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCccEEEEeCCCchHHHHHHHHHC--CCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCC-cCCCCcEEEeccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKY--PHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFE-SVPKADTIFMKVI 260 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~-~~P~gD~~~l~~i 260 (269)
+...+|+|||||+|.++..+++++ |+++++++|+ |.+++.|++ ..+|+++.+|+.+ +.++.|++++..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 456799999999999999999985 6889999997 888887754 2689999999987 5555699999999
Q ss_pred cccCCCC
Q 024350 261 CVCYLNS 267 (269)
Q Consensus 261 Lhd~~d~ 267 (269)
||..+++
T Consensus 149 l~~~~~~ 155 (261)
T 4gek_A 149 LQFLEPS 155 (261)
T ss_dssp GGGSCHH
T ss_pred eeecCch
Confidence 9988754
No 22
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.79 E-value=7.8e-09 Score=87.84 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=68.9
Q ss_pred hHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC
Q 024350 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK 251 (269)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~ 251 (269)
....+++.++ .....+|||||||+|.++..++++.+ +++++|+ |.+++.+++. ++++++.+|+.+ ++|.
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3455666666 56678999999999999999999986 7899997 7788766542 679999999988 6774
Q ss_pred -C-cEEEeccccccCCCC
Q 024350 252 -A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 252 -g-D~~~l~~iLhd~~d~ 267 (269)
. |+++...+||.|+|.
T Consensus 102 ~~fD~V~~~~~l~~~~d~ 119 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP 119 (260)
T ss_dssp TCEEEEEEESCGGGCSCH
T ss_pred CCEEEEEEhhhhHhcCCH
Confidence 4 999999999999874
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.78 E-value=7.8e-09 Score=84.89 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCC-C
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPK-A 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~-g 252 (269)
.+++.++ .+.. +|||||||+|.++..++++ |+.+++++|+ |..++.+++. ++++++.+|+.+ ++|. .
T Consensus 35 ~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 111 (219)
T 3dlc_A 35 NIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY 111 (219)
T ss_dssp HHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred HHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence 3445555 4443 9999999999999999999 8899999998 7888766542 589999999988 6774 3
Q ss_pred -cEEEeccccccCCC
Q 024350 253 -DTIFMKVICVCYLN 266 (269)
Q Consensus 253 -D~~~l~~iLhd~~d 266 (269)
|++++..+||.+++
T Consensus 112 ~D~v~~~~~l~~~~~ 126 (219)
T 3dlc_A 112 ADLIVSRGSVFFWED 126 (219)
T ss_dssp EEEEEEESCGGGCSC
T ss_pred ccEEEECchHhhccC
Confidence 99999999999865
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.78 E-value=7.1e-09 Score=85.90 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=59.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCC-C-cEEEecccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPK-A-DTIFMKVICVC 263 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd 263 (269)
...+|||||||+|.++..+++..| +++++|+ |.+++.+++. ++++++.+|+.+ +.|. . |++++..++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 467999999999999999999988 7899997 7888776642 789999999988 6664 4 99999999666
Q ss_pred CC
Q 024350 264 YL 265 (269)
Q Consensus 264 ~~ 265 (269)
+.
T Consensus 116 ~~ 117 (227)
T 1ve3_A 116 FE 117 (227)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 25
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.73 E-value=3.8e-08 Score=80.86 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--CCceEEecccCCcCCC-C-cEEEe
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--PGIDHVGGDLFESVPK-A-DTIFM 257 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~~~P~-g-D~~~l 257 (269)
.+++.+.......+|||||||+|.++..++++ ..+++++|+ |..++.+++. ++++++.+|+.+..+. . |++++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 34444432445579999999999999999999 668999997 7888777653 7899999999886554 4 99999
Q ss_pred ccccccCCCC
Q 024350 258 KVICVCYLNS 267 (269)
Q Consensus 258 ~~iLhd~~d~ 267 (269)
..+||.++++
T Consensus 114 ~~~l~~~~~~ 123 (218)
T 3ou2_A 114 AHWLAHVPDD 123 (218)
T ss_dssp ESCGGGSCHH
T ss_pred echhhcCCHH
Confidence 9999999874
No 26
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.71 E-value=1.7e-08 Score=83.28 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=70.1
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~- 251 (269)
..++..++ .....+|||||||+|.++..+++.. |+.+++++|. |..++.+++. ++++++.+|+.+ +++.
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34556666 6667899999999999999999997 8899999997 7888776542 589999999987 5664
Q ss_pred C-cEEEeccccccCCC
Q 024350 252 A-DTIFMKVICVCYLN 266 (269)
Q Consensus 252 g-D~~~l~~iLhd~~d 266 (269)
. |++++..+||.+++
T Consensus 106 ~fD~v~~~~~l~~~~~ 121 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE 121 (219)
T ss_dssp CEEEEEEESCGGGCSS
T ss_pred CeeEEEeehhhhhcCC
Confidence 3 99999999999875
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.71 E-value=3e-08 Score=85.89 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=67.7
Q ss_pred HHHHHhc----cCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCC-c
Q 024350 182 EKVLESY----KGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFE-S 248 (269)
Q Consensus 182 ~~~~~~~----~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~-~ 248 (269)
..+++.+ + +....+|||||||+|.++..+++++ +.+++++|+ |..++.+++ .++|+++.+|+.+ +
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 3455555 4 5667899999999999999999987 468999998 777776654 2689999999988 6
Q ss_pred CCC-C-cEEEeccccccCCC
Q 024350 249 VPK-A-DTIFMKVICVCYLN 266 (269)
Q Consensus 249 ~P~-g-D~~~l~~iLhd~~d 266 (269)
+|. . |++++..+||.++|
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~ 165 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD 165 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC
T ss_pred CCCCCEeEEEecchhhhcCC
Confidence 664 3 99999999999986
No 28
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.69 E-value=2.8e-08 Score=85.05 Aligned_cols=77 Identities=16% Similarity=0.321 Sum_probs=66.4
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC-C-cEEEeccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK-A-DTIFMKVI 260 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~-g-D~~~l~~i 260 (269)
+....+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++. ++++++.+|+.+ +.+. . |++++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45678999999999999999999999999999998 7777766542 689999999998 5654 3 99999999
Q ss_pred cccCCCC
Q 024350 261 CVCYLNS 267 (269)
Q Consensus 261 Lhd~~d~ 267 (269)
||.++|.
T Consensus 115 l~~~~~~ 121 (276)
T 3mgg_A 115 LEHLQSP 121 (276)
T ss_dssp GGGCSCH
T ss_pred hhhcCCH
Confidence 9999874
No 29
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.69 E-value=4.9e-08 Score=83.34 Aligned_cols=84 Identities=10% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCC-cCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFE-SVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~-~~P~- 251 (269)
..+++.++ .....+|||||||+|.++..+++++ +.+++++|+ |..++.+++ .++++++.+|+.+ ++|.
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 44566666 6667899999999999999999987 689999998 777766653 2589999999988 6664
Q ss_pred C-cEEEeccccccCCCC
Q 024350 252 A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 252 g-D~~~l~~iLhd~~d~ 267 (269)
. |+++...+||.++|.
T Consensus 129 ~fD~v~~~~~l~~~~~~ 145 (273)
T 3bus_A 129 SFDAVWALESLHHMPDR 145 (273)
T ss_dssp CEEEEEEESCTTTSSCH
T ss_pred CccEEEEechhhhCCCH
Confidence 4 999999999998763
No 30
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.68 E-value=2.7e-08 Score=84.14 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=68.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCCcCCC-C-cEEEec
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFESVPK-A-DTIFMK 258 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~~~P~-g-D~~~l~ 258 (269)
.+++.++ .....+|||||||+|.++..+++++|..+++++|+ |..++.+++ .++++++.+|+.+..|. . |+++..
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence 4555555 55668999999999999999999999999999997 778877765 47899999999872254 4 999999
Q ss_pred cccccCCC
Q 024350 259 VICVCYLN 266 (269)
Q Consensus 259 ~iLhd~~d 266 (269)
.+||.++|
T Consensus 103 ~~l~~~~~ 110 (259)
T 2p35_A 103 AVFQWVPD 110 (259)
T ss_dssp SCGGGSTT
T ss_pred CchhhCCC
Confidence 99998865
No 31
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.66 E-value=5.8e-08 Score=81.98 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCCC
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g 252 (269)
..++..++ .....+|||||||+|.++..+++.+ +.+++++|+ |..++.+++. ++|+++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 34455555 5666899999999999999999998 678999997 7787766542 589999999987 33334
Q ss_pred -cEEEeccccccCCCC
Q 024350 253 -DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 -D~~~l~~iLhd~~d~ 267 (269)
|++++..++|.++|.
T Consensus 104 fD~V~~~~~~~~~~~~ 119 (256)
T 1nkv_A 104 CDVAACVGATWIAGGF 119 (256)
T ss_dssp EEEEEEESCGGGTSSS
T ss_pred CCEEEECCChHhcCCH
Confidence 999999999998763
No 32
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.66 E-value=4.6e-08 Score=82.18 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC-C
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK-A 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~-g 252 (269)
..+++.++ .....+|||||||+|.++..+++..+ +++++|+ |.+++.+++. ++++++.+|+.+ +++. .
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 45566666 66778999999999999999999986 7899997 7777766542 689999999977 5654 4
Q ss_pred -cEEEeccccccCCCC
Q 024350 253 -DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 -D~~~l~~iLhd~~d~ 267 (269)
|++++..++|.|+|.
T Consensus 88 fD~v~~~~~l~~~~~~ 103 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV 103 (239)
T ss_dssp EEEEEEESCGGGCSCH
T ss_pred EEEEEECCchhhccCH
Confidence 999999999999863
No 33
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.66 E-value=2.2e-08 Score=84.89 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=67.5
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----CCceEEecccCC-cCCC-C-c
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----PGIDHVGGDLFE-SVPK-A-D 253 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~ri~~~~gD~~~-~~P~-g-D 253 (269)
..+++.++ .....+|||||||+|.++..+++++ +.+++++|+ |..++.+++. ++|+++.+|+.+ ++|. . |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 34455555 5667899999999999999999988 789999997 7777766543 789999999988 6664 4 9
Q ss_pred EEEeccccccCC
Q 024350 254 TIFMKVICVCYL 265 (269)
Q Consensus 254 ~~~l~~iLhd~~ 265 (269)
+++...+||.++
T Consensus 123 ~v~~~~~l~~~~ 134 (266)
T 3ujc_A 123 LIYSRDAILALS 134 (266)
T ss_dssp EEEEESCGGGSC
T ss_pred EEeHHHHHHhcC
Confidence 999999999984
No 34
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.65 E-value=9.1e-08 Score=83.66 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=72.0
Q ss_pred HHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCce
Q 024350 168 VFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGID 239 (269)
Q Consensus 168 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~ 239 (269)
.|.. +..........+++.++.+....+|||||||+|.++..+++++ +.+++++|+ |..++.+++. ++|+
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 170 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVR 170 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceE
Confidence 4443 4443333334455555434556899999999999999999986 678999998 7888776542 5899
Q ss_pred EEecccCC-cCCC-C-cEEEeccccccCC
Q 024350 240 HVGGDLFE-SVPK-A-DTIFMKVICVCYL 265 (269)
Q Consensus 240 ~~~gD~~~-~~P~-g-D~~~l~~iLhd~~ 265 (269)
++.+|+.+ +++. . |+++...+||.++
T Consensus 171 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 199 (312)
T 3vc1_A 171 SRVCNMLDTPFDKGAVTASWNNESTMYVD 199 (312)
T ss_dssp EEECCTTSCCCCTTCEEEEEEESCGGGSC
T ss_pred EEECChhcCCCCCCCEeEEEECCchhhCC
Confidence 99999988 6664 4 9999999999873
No 35
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.64 E-value=2.1e-08 Score=82.86 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----------CCceEEecccCC-cCCC-C-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----------PGIDHVGGDLFE-SVPK-A-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----------~ri~~~~gD~~~-~~P~-g-D~~~ 256 (269)
.+..+|||||||+|.++..++++.|..+++++|+ |..++.+++. ++|+++.+|+.. +.+. . |+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3457999999999999999999999999999997 7888776542 289999999965 3332 3 9999
Q ss_pred eccccccCCCC
Q 024350 257 MKVICVCYLNS 267 (269)
Q Consensus 257 l~~iLhd~~d~ 267 (269)
+..+||.++++
T Consensus 108 ~~~~l~~~~~~ 118 (219)
T 3jwg_A 108 VIEVIEHLDEN 118 (219)
T ss_dssp EESCGGGCCHH
T ss_pred EHHHHHhCCHH
Confidence 99999998754
No 36
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.63 E-value=4.8e-08 Score=84.29 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCCC-cEEEecccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPKA-DTIFMKVIC 261 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~g-D~~~l~~iL 261 (269)
..+..+|||||||+|.++..+++.+|+ .+++++|+ |..++.+++. .+++++.+|+.+ +.+.. |++++..+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 556789999999999999999999995 89999997 7777666542 389999999998 45444 999999999
Q ss_pred ccCCCC
Q 024350 262 VCYLNS 267 (269)
Q Consensus 262 hd~~d~ 267 (269)
|.++|.
T Consensus 100 ~~~~~~ 105 (284)
T 3gu3_A 100 LHMTTP 105 (284)
T ss_dssp GGCSSH
T ss_pred hcCCCH
Confidence 998763
No 37
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.63 E-value=2.5e-08 Score=82.34 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=62.9
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----------CCceEEecccCC-cCC-CC-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----------PGIDHVGGDLFE-SVP-KA-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----------~ri~~~~gD~~~-~~P-~g-D~~~ 256 (269)
.+..+|||||||+|.++..+++++|..+++++|+ |.+++.+++. ++++++.+|+.. +.+ .. |+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 3457999999999999999999999999999997 7777766532 289999999865 344 24 9999
Q ss_pred eccccccCCCC
Q 024350 257 MKVICVCYLNS 267 (269)
Q Consensus 257 l~~iLhd~~d~ 267 (269)
+..+||.++++
T Consensus 108 ~~~~l~~~~~~ 118 (217)
T 3jwh_A 108 VIEVIEHLDLS 118 (217)
T ss_dssp EESCGGGCCHH
T ss_pred eHHHHHcCCHH
Confidence 99999998754
No 38
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.61 E-value=6.8e-08 Score=81.57 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC---CCCceEEecccCC-cCCC-C-cEE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS---YPGIDHVGGDLFE-SVPK-A-DTI 255 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~---~~ri~~~~gD~~~-~~P~-g-D~~ 255 (269)
.+.+.++ .....+|||||||+|.++..++++.+. +++++|+ |..++.+++ ..+++++.+|+.+ ++|. . |++
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 3445554 335689999999999999999999775 8899998 778877654 3789999999987 6664 4 999
Q ss_pred EeccccccCCC
Q 024350 256 FMKVICVCYLN 266 (269)
Q Consensus 256 ~l~~iLhd~~d 266 (269)
++..+||.++|
T Consensus 113 ~~~~~l~~~~~ 123 (253)
T 3g5l_A 113 LSSLALHYIAS 123 (253)
T ss_dssp EEESCGGGCSC
T ss_pred EEchhhhhhhh
Confidence 99999999865
No 39
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.61 E-value=9.8e-08 Score=79.77 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=64.7
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC---CCceEEecccCC-cCCC-C-cEE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY---PGIDHVGGDLFE-SVPK-A-DTI 255 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~---~ri~~~~gD~~~-~~P~-g-D~~ 255 (269)
.+...++ .....+|||||||+|.++..++++.+ .+++++|+ |..++.+++. .+++++.+|+.+ +.|. . |++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4455555 44567999999999999999998833 27899997 7777766543 579999999987 5554 4 999
Q ss_pred EeccccccCCC
Q 024350 256 FMKVICVCYLN 266 (269)
Q Consensus 256 ~l~~iLhd~~d 266 (269)
++..+||.+++
T Consensus 112 ~~~~~l~~~~~ 122 (243)
T 3bkw_A 112 YSSLALHYVED 122 (243)
T ss_dssp EEESCGGGCSC
T ss_pred EEeccccccch
Confidence 99999999875
No 40
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.60 E-value=9.9e-08 Score=81.53 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=61.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cCCCC--cEEEeccccccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SVPKA--DTIFMKVICVCYL 265 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~P~g--D~~~l~~iLhd~~ 265 (269)
...+|||||||+|.++..|++++. +++.+|. |.+++.+++.++|+++.+|+.+ ++|.+ |+++...+||..+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~ 113 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD 113 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh
Confidence 446899999999999999998874 6789997 8889999989999999999987 77754 9999999998654
No 41
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.58 E-value=1.1e-07 Score=82.66 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPKA- 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~g- 252 (269)
..+++.++ .....+|||||||+|.++..++++++ .+++++|+ |..++.+++. ++|+++.+|+.+- +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 34566666 66678999999999999999999988 89999998 7888766542 4899999999754 544
Q ss_pred cEEEeccccccCCCC
Q 024350 253 DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 D~~~l~~iLhd~~d~ 267 (269)
|+++...++|.++|.
T Consensus 139 D~v~~~~~~~~~~d~ 153 (302)
T 3hem_A 139 DRIVSLGAFEHFADG 153 (302)
T ss_dssp SEEEEESCGGGTTCC
T ss_pred cEEEEcchHHhcCcc
Confidence 999999999999775
No 42
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.57 E-value=9.9e-08 Score=80.04 Aligned_cols=73 Identities=23% Similarity=0.368 Sum_probs=60.6
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC---cCCC-C-cEEEeccccccC
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE---SVPK-A-DTIFMKVICVCY 264 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~---~~P~-g-D~~~l~~iLhd~ 264 (269)
+++..+|||||||+|.++..+++. +.+++++|+ |..++.+++. ++++.+|+.+ ++|. . |+++...+||.+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 345689999999999999999998 556899997 7777776655 9999999877 5564 3 999999999999
Q ss_pred CCC
Q 024350 265 LNS 267 (269)
Q Consensus 265 ~d~ 267 (269)
+++
T Consensus 115 ~~~ 117 (240)
T 3dli_A 115 DPE 117 (240)
T ss_dssp CGG
T ss_pred CcH
Confidence 864
No 43
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.56 E-value=3.3e-08 Score=83.34 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----CCceEEecccCC-cCCC-C-c
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----PGIDHVGGDLFE-SVPK-A-D 253 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~ri~~~~gD~~~-~~P~-g-D 253 (269)
..+++.++ .....+|||||||+|.++..++++. ..+++++|. |.+++.+++. ++++++.+|+.+ ++|. . |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 34555555 4566899999999999999999887 557899997 7777766542 689999999987 5564 3 9
Q ss_pred EEEeccccccCCC
Q 024350 254 TIFMKVICVCYLN 266 (269)
Q Consensus 254 ~~~l~~iLhd~~d 266 (269)
++++..+||.+++
T Consensus 161 ~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 161 LIVIQWTAIYLTD 173 (254)
T ss_dssp EEEEESCGGGSCH
T ss_pred EEEEcchhhhCCH
Confidence 9999999999865
No 44
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.56 E-value=1.4e-07 Score=79.75 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=64.3
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCC-C-
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPK-A- 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~-g- 252 (269)
++..+..++...+|||||||+|.++..+++.+|. +++++|+ |..++.+++. +||+++.+|+.+ +++. .
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 3444432455679999999999999999999986 8999998 7777766542 579999999977 5664 4
Q ss_pred cEEEeccccccC
Q 024350 253 DTIFMKVICVCY 264 (269)
Q Consensus 253 D~~~l~~iLhd~ 264 (269)
|++++..+||.+
T Consensus 116 D~v~~~~~l~~~ 127 (257)
T 3f4k_A 116 DLIWSEGAIYNI 127 (257)
T ss_dssp EEEEEESCSCCC
T ss_pred EEEEecChHhhc
Confidence 999999999987
No 45
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.56 E-value=7.6e-08 Score=82.67 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-CCceEEecccCC-cCCCC-cEEEec
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-PGIDHVGGDLFE-SVPKA-DTIFMK 258 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~-~~P~g-D~~~l~ 258 (269)
.+++.++ .....+|||||||+|.++..+++ |..+++++|+ |..++.+++. ++++++.+|+.+ +.+.. |+++..
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 3455555 55668999999999999999998 8889999997 7778776653 789999999987 44444 999999
Q ss_pred cccccCCCC
Q 024350 259 VICVCYLNS 267 (269)
Q Consensus 259 ~iLhd~~d~ 267 (269)
++||.++|.
T Consensus 125 ~~l~~~~d~ 133 (279)
T 3ccf_A 125 AMLHWVKEP 133 (279)
T ss_dssp SCGGGCSCH
T ss_pred chhhhCcCH
Confidence 999988763
No 46
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.55 E-value=7.8e-08 Score=79.30 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--CCceEEecccCC-cCCCC-cEEEec
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--PGIDHVGGDLFE-SVPKA-DTIFMK 258 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~-~~P~g-D~~~l~ 258 (269)
+++.+. .....+|||||||+|.++..++++ +.+++++|. |..++.+++. ++++++.+|+.+ +.+.. |++++.
T Consensus 37 ~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 113 (220)
T 3hnr_A 37 ILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVST 113 (220)
T ss_dssp HHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEE
T ss_pred HHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEEC
Confidence 444443 335579999999999999999998 678999997 7777766543 489999999998 55544 999999
Q ss_pred cccccCCCC
Q 024350 259 VICVCYLNS 267 (269)
Q Consensus 259 ~iLhd~~d~ 267 (269)
.+||.+++.
T Consensus 114 ~~l~~~~~~ 122 (220)
T 3hnr_A 114 YAFHHLTDD 122 (220)
T ss_dssp SCGGGSCHH
T ss_pred cchhcCChH
Confidence 999998864
No 47
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.55 E-value=1.3e-07 Score=80.66 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCC-C-cEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPK-A-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~-g-D~~~l~~ 259 (269)
+....+|||||||+|.++..+++. |..+++++|+ |..++.+++. ++|+++.+|+.+ +++. . |++++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456689999999999999999998 8899999998 7777766542 679999999987 5554 3 9999999
Q ss_pred ccccC
Q 024350 260 ICVCY 264 (269)
Q Consensus 260 iLhd~ 264 (269)
++|.+
T Consensus 123 ~~~~~ 127 (267)
T 3kkz_A 123 AIYNI 127 (267)
T ss_dssp CGGGT
T ss_pred Cceec
Confidence 99987
No 48
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2e-07 Score=80.81 Aligned_cols=73 Identities=25% Similarity=0.232 Sum_probs=63.0
Q ss_pred CCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCC--------CCCceEEecccCC-cCCC------C--
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPS--------YPGIDHVGGDLFE-SVPK------A-- 252 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~--------~~ri~~~~gD~~~-~~P~------g-- 252 (269)
....+|||||||+|.++..+++++ |..+++++|+ |..++.+++ .++|+++.+|+.+ +.+. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 456899999999999999999997 8999999997 778877654 4799999999988 5444 3
Q ss_pred cEEEeccccccC
Q 024350 253 DTIFMKVICVCY 264 (269)
Q Consensus 253 D~~~l~~iLhd~ 264 (269)
|++++..+||.+
T Consensus 115 D~V~~~~~l~~~ 126 (299)
T 3g5t_A 115 DMITAVECAHWF 126 (299)
T ss_dssp EEEEEESCGGGS
T ss_pred eEEeHhhHHHHh
Confidence 999999999987
No 49
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.52 E-value=2.1e-07 Score=78.70 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=61.2
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----CCCceEEecccCC-cCCC-C-cEEEecccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----YPGIDHVGGDLFE-SVPK-A-DTIFMKVIC 261 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----~~ri~~~~gD~~~-~~P~-g-D~~~l~~iL 261 (269)
.....+|||||||+|.++..++++ ..+++++|. |..++.+++ .++++++.+|+.+ ++|. . |++++..+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456689999999999999999987 568899997 677766543 3789999999977 5564 3 999999999
Q ss_pred ccCCC
Q 024350 262 VCYLN 266 (269)
Q Consensus 262 hd~~d 266 (269)
|.++|
T Consensus 115 ~~~~~ 119 (263)
T 2yqz_A 115 HLVPD 119 (263)
T ss_dssp GGCTT
T ss_pred hhcCC
Confidence 99875
No 50
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.52 E-value=2.3e-07 Score=77.55 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=62.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC---CCceEEecccCC-cCCC-C-cEEEeccccccC
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY---PGIDHVGGDLFE-SVPK-A-DTIFMKVICVCY 264 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~---~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd~ 264 (269)
+...+|||||||+|.++..+++. +.+++++|+ |..++.+++. .+++++.+|+.+ +.|. . |++++.++||.+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 35579999999999999999998 668899997 7788777653 789999999998 6664 4 999999999998
Q ss_pred CCC
Q 024350 265 LNS 267 (269)
Q Consensus 265 ~d~ 267 (269)
++.
T Consensus 130 ~~~ 132 (242)
T 3l8d_A 130 EEP 132 (242)
T ss_dssp SCH
T ss_pred cCH
Confidence 763
No 51
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.52 E-value=7.4e-08 Score=78.52 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=61.4
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCC-cCCC-C-cEEEeccccccCCCC
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFE-SVPK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd~~d~ 267 (269)
..+|||||||+|.++..++++ +.+++++|+ |.+++.+++ .++++++.+|+.+ +.+. . |++++.++||.++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 478999999999999999998 558899997 778877765 4799999999988 6664 3 999999999999854
No 52
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.51 E-value=1.1e-07 Score=79.55 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=60.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--CCceEEecccCCcCCC-C-cEEEeccccccCCCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--PGIDHVGGDLFESVPK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~~~P~-g-D~~~l~~iLhd~~d~ 267 (269)
...+|||||||+|.++..++++.+ +++++|+ |..++.+++. .+++++.+|+.+..+. . |++++.++||.++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 446899999999999999999987 5788897 6777766543 2899999999875453 4 999999999998764
No 53
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.50 E-value=4.5e-08 Score=85.36 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=64.8
Q ss_pred CCCccEEEEeCCCchHHHHHHH-HHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCCC-cEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMII-SKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g-D~~~l~~ 259 (269)
+....+|+|||||+|.++..++ ..+|+.+++++|+ |..++.+++. +||+++.+|+.+ +.+.. |++++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 3456899999999999999996 7899999999998 8888766542 569999999998 55544 9999999
Q ss_pred ccccCCCC
Q 024350 260 ICVCYLNS 267 (269)
Q Consensus 260 iLhd~~d~ 267 (269)
++|.++|.
T Consensus 196 ~~~~~~~~ 203 (305)
T 3ocj_A 196 LNIYEPDD 203 (305)
T ss_dssp SGGGCCCH
T ss_pred hhhhcCCH
Confidence 99998764
No 54
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.49 E-value=7.3e-08 Score=79.16 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=62.9
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------------------CCCceEEecc
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------------------YPGIDHVGGD 244 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------------------~~ri~~~~gD 244 (269)
++..+. .+...+|+|||||+|..+..++++ ..+++.+|+ |.+++.+++ ..+|+++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 334444 556689999999999999999987 568999997 778876643 2589999999
Q ss_pred cCC-cCCC--C-cEEEeccccccCCC
Q 024350 245 LFE-SVPK--A-DTIFMKVICVCYLN 266 (269)
Q Consensus 245 ~~~-~~P~--g-D~~~l~~iLhd~~d 266 (269)
+++ +.+. . |+++.+.+||..++
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~ 116 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPA 116 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCH
T ss_pred cccCCcccCCCEEEEEECcchhhCCH
Confidence 998 4432 3 99999999988764
No 55
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.48 E-value=2.7e-07 Score=79.33 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCcCCCC-c
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFESVPKA-D 253 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~~P~g-D 253 (269)
.+++.++ .....+|||||||.|.++..++++++. +++++|+ |..++.+++ .++|+++.+|+.+ +|.. |
T Consensus 55 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~fD 131 (287)
T 1kpg_A 55 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPVD 131 (287)
T ss_dssp HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCCS
T ss_pred HHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCee
Confidence 4555555 556689999999999999999988754 9999997 777776654 2689999999954 5544 9
Q ss_pred EEEeccccccCCCC
Q 024350 254 TIFMKVICVCYLNS 267 (269)
Q Consensus 254 ~~~l~~iLhd~~d~ 267 (269)
+++...+||.++++
T Consensus 132 ~v~~~~~l~~~~~~ 145 (287)
T 1kpg_A 132 RIVSIGAFEHFGHE 145 (287)
T ss_dssp EEEEESCGGGTCTT
T ss_pred EEEEeCchhhcChH
Confidence 99999999999653
No 56
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.48 E-value=2.1e-07 Score=75.18 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=64.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCCC-c
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPKA-D 253 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~g-D 253 (269)
.+++.++ .....+|+|||||+|.++..+++. +.+++++|. |..++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3445555 445579999999999999999988 678999998 7778776542 479999999987 44444 9
Q ss_pred EEEeccccccCCCC
Q 024350 254 TIFMKVICVCYLNS 267 (269)
Q Consensus 254 ~~~l~~iLhd~~d~ 267 (269)
+++...++|.++++
T Consensus 100 ~v~~~~~l~~~~~~ 113 (199)
T 2xvm_A 100 FILSTVVLMFLEAK 113 (199)
T ss_dssp EEEEESCGGGSCGG
T ss_pred EEEEcchhhhCCHH
Confidence 99999999988743
No 57
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.48 E-value=1.6e-07 Score=80.18 Aligned_cols=84 Identities=11% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeehhH-------HHHhCCCC-------CCceEEecc-cC
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDLLY-------VIKNAPSY-------PGIDHVGGD-LF 246 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dlp~-------vv~~a~~~-------~ri~~~~gD-~~ 246 (269)
.+++.++ .....+|||||||+|.++..+++++ |+.+++++|+.+ .++.+++. ++|+++.+| +.
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4556666 6667899999999999999999996 889999999843 56555431 689999998 65
Q ss_pred C-c--CCC-C-cEEEeccccccCCCC
Q 024350 247 E-S--VPK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 247 ~-~--~P~-g-D~~~l~~iLhd~~d~ 267 (269)
. . ++. . |++++..+||.+++.
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~ 138 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASA 138 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCH
T ss_pred hccCCCCCCCEEEEEEccchhhCCCH
Confidence 4 2 343 3 999999999998864
No 58
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.46 E-value=2e-07 Score=80.21 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=64.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-c-CCC-
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-S-VPK- 251 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~-~P~- 251 (269)
.++..++ . +..+|||||||+|.++..+++. ..+++++|+ |..++.+++. ++++++.+|+.+ + .+.
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 3455554 2 3579999999999999999998 678999998 7788776542 689999999988 3 443
Q ss_pred C-cEEEeccccccCCCC
Q 024350 252 A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 252 g-D~~~l~~iLhd~~d~ 267 (269)
. |++++..+||.++|.
T Consensus 136 ~fD~v~~~~~l~~~~~~ 152 (285)
T 4htf_A 136 PVDLILFHAVLEWVADP 152 (285)
T ss_dssp CEEEEEEESCGGGCSCH
T ss_pred CceEEEECchhhcccCH
Confidence 4 999999999998763
No 59
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.46 E-value=2.4e-07 Score=83.53 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=64.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCC--------------CCceEEecccCC-------cC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSY--------------PGIDHVGGDLFE-------SV 249 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~--------------~ri~~~~gD~~~-------~~ 249 (269)
...+|||||||+|.++..+++.+ |+.+++++|+ |..++.+++. ++|+++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45799999999999999999997 8999999998 7788776643 689999999987 45
Q ss_pred CC-C-cEEEeccccccCCCC
Q 024350 250 PK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 250 P~-g-D~~~l~~iLhd~~d~ 267 (269)
|. . |+++...+||.++|.
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~ 182 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNK 182 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCH
T ss_pred CCCCEEEEEEccchhcCCCH
Confidence 54 3 999999999998763
No 60
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=80.26 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAP 233 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~ 233 (269)
...+|||||||+|.++..+++++|..+++++|+ |.+++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 458999999999999999999999999999998 77776654
No 61
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.44 E-value=5.2e-07 Score=73.65 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=65.2
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCC--CC-
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVP--KA- 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P--~g- 252 (269)
.++..++ .....+|+|||||+|.++..+++.+|+.+++.+|. |..++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3455555 56678999999999999999999999999999998 8888777642 789999999987544 23
Q ss_pred cEEEecccccc
Q 024350 253 DTIFMKVICVC 263 (269)
Q Consensus 253 D~~~l~~iLhd 263 (269)
|++++...+++
T Consensus 110 D~i~~~~~~~~ 120 (204)
T 3e05_A 110 DRVFIGGSGGM 120 (204)
T ss_dssp SEEEESCCTTC
T ss_pred CEEEECCCCcC
Confidence 99998877663
No 62
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.44 E-value=8.4e-08 Score=75.92 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=63.4
Q ss_pred HHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCCcCCC-C-cEEEeccc
Q 024350 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFESVPK-A-DTIFMKVI 260 (269)
Q Consensus 185 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~~~P~-g-D~~~l~~i 260 (269)
++.++ .....+|||||||+|.++..++++.. +++++|+ |..++.+++ .++|+++.+| .+++. . |++++..+
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence 44445 55678999999999999999999984 8899997 777777665 5899999999 45564 3 99999999
Q ss_pred cccCCC
Q 024350 261 CVCYLN 266 (269)
Q Consensus 261 Lhd~~d 266 (269)
+|.+++
T Consensus 85 l~~~~~ 90 (170)
T 3i9f_A 85 FHDMDD 90 (170)
T ss_dssp STTCSC
T ss_pred hhcccC
Confidence 999865
No 63
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.43 E-value=3.7e-08 Score=80.04 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-C-cEEEecccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK-A-DTIFMKVIC 261 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~-g-D~~~l~~iL 261 (269)
....+|+|||||.|.++..++...|+.+.+..|+ +..++.+++. .++++ .|+.+..|. . |++++-++|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4578999999999999999999999999999997 7788777642 25665 777765454 3 999999999
Q ss_pred ccCCC
Q 024350 262 VCYLN 266 (269)
Q Consensus 262 hd~~d 266 (269)
|..++
T Consensus 126 HlL~~ 130 (200)
T 3fzg_A 126 PVLKQ 130 (200)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 98743
No 64
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.43 E-value=1.4e-07 Score=78.93 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC-C-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK-A- 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~-g- 252 (269)
..+++.++ .....+|||||||+|.++..+++..| .+++++|+ |..++.+++. ++++++.+|+..++|. +
T Consensus 81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (235)
T 1jg1_A 81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 158 (235)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence 34555555 56667999999999999999999998 88999995 7777766542 5699999998666663 3
Q ss_pred -cEEEeccccccCCC
Q 024350 253 -DTIFMKVICVCYLN 266 (269)
Q Consensus 253 -D~~~l~~iLhd~~d 266 (269)
|++++...+|.+++
T Consensus 159 fD~Ii~~~~~~~~~~ 173 (235)
T 1jg1_A 159 YDVIIVTAGAPKIPE 173 (235)
T ss_dssp EEEEEECSBBSSCCH
T ss_pred ccEEEECCcHHHHHH
Confidence 99999999987753
No 65
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.42 E-value=3e-07 Score=73.81 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=63.3
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-CCceEEecccCC-cCCC-C-cEEEe
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-PGIDHVGGDLFE-SVPK-A-DTIFM 257 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~-~~P~-g-D~~~l 257 (269)
.++..+. +...+|+|||||.|.++..+++. +.+++++|. |..++.+++. ++++++.+|+.+ +.|. . |++++
T Consensus 38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHHS--CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHhc--cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 3455442 45679999999999999999988 568899997 7777776653 689999999998 5664 4 99999
Q ss_pred c-cccccCCC
Q 024350 258 K-VICVCYLN 266 (269)
Q Consensus 258 ~-~iLhd~~d 266 (269)
. .++|.+++
T Consensus 114 ~~~~~~~~~~ 123 (195)
T 3cgg_A 114 AGNVMGFLAE 123 (195)
T ss_dssp CCCCGGGSCH
T ss_pred CCcHHhhcCh
Confidence 8 88887653
No 66
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.41 E-value=3.6e-07 Score=75.14 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCCcCCC-C-cEEEecccccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFESVPK-A-DTIFMKVICVC 263 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~~~P~-g-D~~~l~~iLhd 263 (269)
.....+|||||||+|.++..+++.. .+++++|+ |..++.+++ .++++++.+|+.+..|. . |++++..+||.
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4456899999999999999999986 47899997 777766543 36899999999884353 4 99999999999
Q ss_pred CCCC
Q 024350 264 YLNS 267 (269)
Q Consensus 264 ~~d~ 267 (269)
+++.
T Consensus 127 ~~~~ 130 (216)
T 3ofk_A 127 LEDM 130 (216)
T ss_dssp SSSH
T ss_pred CCCH
Confidence 9863
No 67
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.41 E-value=3.3e-07 Score=72.75 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=61.5
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------C-CCceEEecccCCcCCC---C
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------Y-PGIDHVGGDLFESVPK---A 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~-~ri~~~~gD~~~~~P~---g 252 (269)
++..++ .....+|+|||||+|.++..+++.+|..+++++|+ |..++.+++ . +++ ++.+|..+.+|. .
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 94 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN 94 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence 444555 55668999999999999999999999999999998 677776653 1 378 888998775552 3
Q ss_pred -cEEEecccccc
Q 024350 253 -DTIFMKVICVC 263 (269)
Q Consensus 253 -D~~~l~~iLhd 263 (269)
|++++...+|.
T Consensus 95 ~D~i~~~~~~~~ 106 (178)
T 3hm2_A 95 PDVIFIGGGLTA 106 (178)
T ss_dssp CSEEEECC-TTC
T ss_pred CCEEEECCcccH
Confidence 99999998876
No 68
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.41 E-value=7.9e-07 Score=70.80 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=58.1
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCCcCCC-C-cEEEeccccccCCCC
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFESVPK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~~~P~-g-D~~~l~~iLhd~~d~ 267 (269)
..+|+|||||+|.++..++++. +++.+|+ |..++. .++++++.+|++++.+. . |+++..-.+|..++.
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 4699999999999999999988 8999998 677766 67899999999997774 3 999998888876654
No 69
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.41 E-value=6.3e-07 Score=76.06 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCC-cCCCC-cEEEecc-ccccCCC
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFE-SVPKA-DTIFMKV-ICVCYLN 266 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~-~~P~g-D~~~l~~-iLhd~~d 266 (269)
++..+|||||||+|.++..++++.+ +++++|+ |.+++.+++ .++|+++.+|+.+ +.+.. |++++.. +||.+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 3558999999999999999999865 6899998 888887765 3799999999988 45444 9999997 9998753
No 70
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.40 E-value=4.3e-07 Score=79.37 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPKA- 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~g- 252 (269)
..+++.++ .....+|||||||.|.++..+++++ +.+++++|+ |..++.+++. ++|+++.+|+.+ +|..
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV 156 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCc
Confidence 34556555 5566899999999999999999987 569999998 7777766542 679999999865 4544
Q ss_pred cEEEeccccccCCC
Q 024350 253 DTIFMKVICVCYLN 266 (269)
Q Consensus 253 D~~~l~~iLhd~~d 266 (269)
|+++...+||.+++
T Consensus 157 D~v~~~~~l~~~~~ 170 (318)
T 2fk8_A 157 DRIVSIEAFEHFGH 170 (318)
T ss_dssp SEEEEESCGGGTCG
T ss_pred CEEEEeChHHhcCH
Confidence 99999999999864
No 71
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.38 E-value=2.1e-07 Score=77.74 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=58.9
Q ss_pred cEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-C-cEEEeccccccC
Q 024350 195 KKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK-A-DTIFMKVICVCY 264 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~-g-D~~~l~~iLhd~ 264 (269)
.+|||||||+|.++..+++ +..+++++|+ |..++.+++. .+|+++.+|+.+..|. . |+++...+||.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 6778999997 7777766542 5699999999984454 4 999999999998
Q ss_pred CCC
Q 024350 265 LNS 267 (269)
Q Consensus 265 ~d~ 267 (269)
+++
T Consensus 146 ~~~ 148 (235)
T 3lcc_A 146 EPE 148 (235)
T ss_dssp CGG
T ss_pred CHH
Confidence 743
No 72
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.38 E-value=3.4e-07 Score=84.99 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=65.4
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVPKA- 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P~g- 252 (269)
..+++.++ .....+|+|||||+|.++..+++ .|..+++++|+.++++.+++ .++|+++.+|+.+ +.|..
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 34555555 44567999999999999998887 68889999999777665543 1789999999998 66755
Q ss_pred cEEEeccccccCCCC
Q 024350 253 DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 D~~~l~~iLhd~~d~ 267 (269)
|+|+...++|.|.++
T Consensus 226 D~Ivs~~~~~~~~~e 240 (480)
T 3b3j_A 226 DIIISEPMGYMLFNE 240 (480)
T ss_dssp EEEECCCCHHHHTCH
T ss_pred EEEEEeCchHhcCcH
Confidence 999998777766543
No 73
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.35 E-value=7.1e-07 Score=73.89 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----------CCceEEecccCC-cCCC-C-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----------PGIDHVGGDLFE-SVPK-A-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----------~ri~~~~gD~~~-~~P~-g-D~~~ 256 (269)
+...+|||||||+|.++..++++ +.+++++|+ |..++.+++. ++++++.+|+.+ +++. . |+++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35679999999999999999998 678999997 7777665431 368999999988 6664 3 9999
Q ss_pred eccccccCCCC
Q 024350 257 MKVICVCYLNS 267 (269)
Q Consensus 257 l~~iLhd~~d~ 267 (269)
+..+||.+++.
T Consensus 107 ~~~~l~~~~~~ 117 (235)
T 3sm3_A 107 MQAFLTSVPDP 117 (235)
T ss_dssp EESCGGGCCCH
T ss_pred EcchhhcCCCH
Confidence 99999999864
No 74
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.35 E-value=6e-07 Score=81.22 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=62.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC---------------CCCceEEeccc
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS---------------YPGIDHVGGDL 245 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~---------------~~ri~~~~gD~ 245 (269)
..+++.+. +....+|+|||||+|..+..++..++.-+++++|+ |..++.|++ .++|+++.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 34556666 66678999999999999999999988777999998 555554432 26899999999
Q ss_pred CC-cCC----CCcEEEeccccc
Q 024350 246 FE-SVP----KADTIFMKVICV 262 (269)
Q Consensus 246 ~~-~~P----~gD~~~l~~iLh 262 (269)
++ +++ ..|++++.+++|
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F 263 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF 263 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC
T ss_pred cCCccccccCCccEEEEccccc
Confidence 98 553 359999988775
No 75
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.35 E-value=5.7e-07 Score=77.23 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=57.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCcCCC-C
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFESVPK-A 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~~P~-g 252 (269)
.++..++ +....+|+|||||+|.++..+++. +|..+++++|+ |..++.+++ .++++++.+|+.+++|. .
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 3445555 566789999999999999999998 89999999998 777776543 25899999999987774 3
Q ss_pred -cEEEe
Q 024350 253 -DTIFM 257 (269)
Q Consensus 253 -D~~~l 257 (269)
|++++
T Consensus 180 fD~Vi~ 185 (275)
T 1yb2_A 180 YDAVIA 185 (275)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 99887
No 76
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.34 E-value=4.1e-07 Score=76.35 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC---CCCceEEecccCC-cCCC-------CcEEEecc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS---YPGIDHVGGDLFE-SVPK-------ADTIFMKV 259 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~---~~ri~~~~gD~~~-~~P~-------gD~~~l~~ 259 (269)
....+|||||||+|.++..+++..+ +++.+|. |.+++.+++ ..+++++.+|+.+ +.+. .|++++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 4557899999999999999999998 7889997 777776654 3589999999998 3322 38999999
Q ss_pred ccccCCCC
Q 024350 260 ICVCYLNS 267 (269)
Q Consensus 260 iLhd~~d~ 267 (269)
++|..+++
T Consensus 133 ~~~~~~~~ 140 (245)
T 3ggd_A 133 GFHHIPVE 140 (245)
T ss_dssp SSTTSCGG
T ss_pred hhhcCCHH
Confidence 99998754
No 77
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.34 E-value=9e-07 Score=72.89 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=56.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-c--CCC-C-cEEEecc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-S--VPK-A-DTIFMKV 259 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~--~P~-g-D~~~l~~ 259 (269)
...+|||||||+|.++..+++.+|+.+++++|+ |..++.+++ .++|+++.+|+.+ + +|. . |++++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 357899999999999999999999999999997 788877654 2689999999987 3 554 3 8888763
No 78
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.33 E-value=1.1e-06 Score=72.39 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=62.2
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC---cCCC-C-cEE
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE---SVPK-A-DTI 255 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~---~~P~-g-D~~ 255 (269)
..+++.++ ....+|+|||||+|.++..+++. + .+++++|. |..++.+++.- .+++.+|+.+ +++. . |++
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555544 35679999999999999999988 5 88999997 77777665432 3788899875 3443 3 999
Q ss_pred EeccccccCCCC
Q 024350 256 FMKVICVCYLNS 267 (269)
Q Consensus 256 ~l~~iLhd~~d~ 267 (269)
++.++||.+++.
T Consensus 98 ~~~~~l~~~~~~ 109 (230)
T 3cc8_A 98 IFGDVLEHLFDP 109 (230)
T ss_dssp EEESCGGGSSCH
T ss_pred EECChhhhcCCH
Confidence 999999998763
No 79
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.33 E-value=1.1e-06 Score=75.34 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=56.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC-C-cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK-A-DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~-g-D~~~l~ 258 (269)
...+|+|||||+|..+..+++.+|+.+++.+|. |..++.++++ ++++++.+|++++.+. . |+++..
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN 183 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence 456999999999999999999999999999997 7777776642 5899999999987653 4 999987
No 80
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.32 E-value=7.5e-07 Score=72.96 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=60.7
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cCCCC-cEEEeccccccCCC
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SVPKA-DTIFMKVICVCYLN 266 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~P~g-D~~~l~~iLhd~~d 266 (269)
++...+|||||||+|.++..++++ ..+++++|+ |..++.+++.-+++++.+|+.+ +.+.. |++++..+||.+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 345679999999999999999988 568899997 7788777665578899999887 42234 99999999999873
No 81
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.31 E-value=2e-06 Score=70.76 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHh----CCC------CCCceEEecccCC-cCCCC-cEEE
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKN----APS------YPGIDHVGGDLFE-SVPKA-DTIF 256 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~----a~~------~~ri~~~~gD~~~-~~P~g-D~~~ 256 (269)
.....+|||||||+|.++..+++.+|+.+++.+|+ |.+++. +++ .++|+++.+|+.+ +.+.+ |.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 45568999999999999999999999999999998 554442 332 2689999999988 55544 6665
No 82
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.29 E-value=3.4e-07 Score=76.77 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=60.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC-C-cEEEeccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK-A-DTIFMKVICV 262 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~-g-D~~~l~~iLh 262 (269)
...+|||||||+|.++..++++. ..+++++|+ |.+++.+++. .+++++.+|+.+ +.+. . |++++..+||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46799999999999999999887 568899997 7777766542 368999999877 4554 3 9999999999
Q ss_pred cCCCC
Q 024350 263 CYLNS 267 (269)
Q Consensus 263 d~~d~ 267 (269)
.++++
T Consensus 158 ~~~~~ 162 (241)
T 2ex4_A 158 HLTDQ 162 (241)
T ss_dssp GSCHH
T ss_pred hCCHH
Confidence 98763
No 83
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.29 E-value=7.7e-07 Score=76.53 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=64.1
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCCC-cE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPKA-DT 254 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~g-D~ 254 (269)
.+++.++ .....+|||||||+|.++..+++. +.+++++|. |..++.+++. -+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 335689999999999999999998 568999997 7777766542 289999999988 34444 99
Q ss_pred EEeccccccCCCC
Q 024350 255 IFMKVICVCYLNS 267 (269)
Q Consensus 255 ~~l~~iLhd~~d~ 267 (269)
+++..+||.++++
T Consensus 188 i~~~~~~~~~~~~ 200 (286)
T 3m70_A 188 IVSTVVFMFLNRE 200 (286)
T ss_dssp EEECSSGGGSCGG
T ss_pred EEEccchhhCCHH
Confidence 9999999988754
No 84
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.28 E-value=5.5e-07 Score=77.58 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=60.0
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCC-c---CCC-C-cE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFE-S---VPK-A-DT 254 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~-~---~P~-g-D~ 254 (269)
.+..+|||||||+|.++..++++.+ +++++|+ |..++.+++ ..++.+..+|+.+ + .+. . |+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 3457999999999999999999844 8899997 777776643 1678999999988 5 454 4 99
Q ss_pred EEec-cccccCCC
Q 024350 255 IFMK-VICVCYLN 266 (269)
Q Consensus 255 ~~l~-~iLhd~~d 266 (269)
+++. ++||.+++
T Consensus 134 V~~~g~~l~~~~~ 146 (293)
T 3thr_A 134 VICLGNSFAHLPD 146 (293)
T ss_dssp EEECTTCGGGSCC
T ss_pred EEEcChHHhhcCc
Confidence 9998 99999887
No 85
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.28 E-value=6.3e-07 Score=74.92 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=56.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC---CcEEEecc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK---ADTIFMKV 259 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~---gD~~~l~~ 259 (269)
...+|+|||||+|.+++.+++..|..+++..|+ |..++.|+++ ++|++..+|.++++|. .|++++..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 457999999999999999999999999999997 6777776642 6899999999997773 39888654
No 86
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.28 E-value=1.6e-06 Score=70.92 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=64.4
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCCcCC-C-C-c
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFESVP-K-A-D 253 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~~~P-~-g-D 253 (269)
+++.++ .....+|+|||||+|.++..+++. ..+++.+|. |..++.+++ .++++++.+|..+..+ . . |
T Consensus 69 ~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (210)
T 3lbf_A 69 MTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFD 145 (210)
T ss_dssp HHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred HHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCcc
Confidence 344555 566789999999999999999998 678899997 777776654 2679999999988544 3 3 9
Q ss_pred EEEeccccccCCC
Q 024350 254 TIFMKVICVCYLN 266 (269)
Q Consensus 254 ~~~l~~iLhd~~d 266 (269)
++++...+|..++
T Consensus 146 ~i~~~~~~~~~~~ 158 (210)
T 3lbf_A 146 AIIVTAAPPEIPT 158 (210)
T ss_dssp EEEESSBCSSCCT
T ss_pred EEEEccchhhhhH
Confidence 9999999998775
No 87
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.26 E-value=1.4e-06 Score=78.34 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=63.5
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC---------CCceEEecccCCcCCC-C
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY---------PGIDHVGGDLFESVPK-A 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~---------~ri~~~~gD~~~~~P~-g 252 (269)
+++.++ .....+|+|||||+|.++..+++++|..+++.+|. |..++.++++ .+++++.+|+++++|. .
T Consensus 214 ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~ 292 (375)
T 4dcm_A 214 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 292 (375)
T ss_dssp HHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTC
T ss_pred HHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCC
Confidence 456555 33447999999999999999999999999999997 7788777652 2588899999998775 4
Q ss_pred -cEEEecccccc
Q 024350 253 -DTIFMKVICVC 263 (269)
Q Consensus 253 -D~~~l~~iLhd 263 (269)
|++++.-.+|.
T Consensus 293 fD~Ii~nppfh~ 304 (375)
T 4dcm_A 293 FNAVLCNPPFHQ 304 (375)
T ss_dssp EEEEEECCCC--
T ss_pred eeEEEECCCccc
Confidence 99999888774
No 88
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.26 E-value=7.2e-07 Score=76.84 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred CccEEEEeCCCchH----HHHHHHHHCC----CCeEEEeeh-hHHHHhCCCC----------------------------
Q 024350 193 HVKKLVDVGGGLGA----TLNMIISKYP----HIKGINYDL-LYVIKNAPSY---------------------------- 235 (269)
Q Consensus 193 ~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~vv~Dl-p~vv~~a~~~---------------------------- 235 (269)
+..+|+|+|||+|. +++.+++..| +.+++..|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34789999999998 6666777766 468899998 7777765431
Q ss_pred ---------CCceEEecccCC-cCC-C-C-cEEEeccccccCCCC
Q 024350 236 ---------PGIDHVGGDLFE-SVP-K-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 236 ---------~ri~~~~gD~~~-~~P-~-g-D~~~l~~iLhd~~d~ 267 (269)
++|+|..+|+.+ ++| . . |+|+++++|++++++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~ 229 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT 229 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence 369999999999 566 3 4 999999999998764
No 89
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.26 E-value=1.5e-06 Score=71.31 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=65.0
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCC-C-C-
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVP-K-A- 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P-~-g- 252 (269)
+++.+. .....+|||||||+|.++..+++.. |+.+++.+|. |..++.+++. ++++++.+|+..+.+ . .
T Consensus 69 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 147 (215)
T 2yxe_A 69 MCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPY 147 (215)
T ss_dssp HHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCE
T ss_pred HHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCe
Confidence 344444 4556799999999999999999988 7789999997 7777766542 679999999977655 3 3
Q ss_pred cEEEeccccccCC
Q 024350 253 DTIFMKVICVCYL 265 (269)
Q Consensus 253 D~~~l~~iLhd~~ 265 (269)
|++++..++|..+
T Consensus 148 D~v~~~~~~~~~~ 160 (215)
T 2yxe_A 148 DRIYTTAAGPKIP 160 (215)
T ss_dssp EEEEESSBBSSCC
T ss_pred eEEEECCchHHHH
Confidence 9999999998765
No 90
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.26 E-value=1.1e-06 Score=73.07 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-CCceEEecccCC-cCCCC-cEEE-eccccccCCC
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-PGIDHVGGDLFE-SVPKA-DTIF-MKVICVCYLN 266 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~-~~P~g-D~~~-l~~iLhd~~d 266 (269)
.+..+|||||||+|.++..++++++ +++++|+ |.+++.+++. ++++++.+|+.+ +.+.. |+++ ...++|..++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3457999999999999999999987 7899998 8888877653 789999999987 44444 9999 5558887754
No 91
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.24 E-value=1.7e-06 Score=72.95 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=61.9
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~- 251 (269)
..++..++ .....+|+|||||+|.++..+++. .|..+++.+|+ |..++.+++. +|++++.+|+.+.+|.
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 566789999999999999999999 89999999998 7888777642 5699999999987775
Q ss_pred C-cEEEe
Q 024350 252 A-DTIFM 257 (269)
Q Consensus 252 g-D~~~l 257 (269)
. |++++
T Consensus 162 ~~D~v~~ 168 (255)
T 3mb5_A 162 NVDHVIL 168 (255)
T ss_dssp SEEEEEE
T ss_pred CcCEEEE
Confidence 3 98876
No 92
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.23 E-value=9.4e-07 Score=72.67 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=62.6
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCCc-----CCC-C-cE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFES-----VPK-A-DT 254 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~~-----~P~-g-D~ 254 (269)
.++..+. .....+|||||||+|.++..+++. +.+++++|+ |..++.+++..++++..+|+.+. .+. . |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3444444 334589999999999999999988 668999997 78888887778889999887652 222 3 99
Q ss_pred EEeccccccCCC
Q 024350 255 IFMKVICVCYLN 266 (269)
Q Consensus 255 ~~l~~iLhd~~d 266 (269)
+++..+|| +++
T Consensus 120 v~~~~~l~-~~~ 130 (227)
T 3e8s_A 120 ICANFALL-HQD 130 (227)
T ss_dssp EEEESCCC-SSC
T ss_pred EEECchhh-hhh
Confidence 99999999 655
No 93
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.23 E-value=1.4e-06 Score=72.02 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-c--CCCC--cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-S--VPKA--DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~--~P~g--D~~~l 257 (269)
+..+|||||||+|.++..+++.+|+.+++++|+ +..++.+++ .++|+++.+|+.+ + +|.+ |.+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 357899999999999999999999999999997 777776653 2679999999987 3 5543 87765
No 94
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.22 E-value=9.1e-07 Score=74.13 Aligned_cols=68 Identities=16% Similarity=0.035 Sum_probs=56.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC---CcEEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK---ADTIFMKVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~---gD~~~l~~i 260 (269)
...+|+|||||+|.+++.+++..|..+++..|+ |..++.|+++ +||++..+|.++.++. .|++++..+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 457999999999999999999999999999997 7777776642 6899999999996553 399886654
No 95
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.22 E-value=2e-06 Score=71.67 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=57.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCCC-cEEEecc-cccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPKA-DTIFMKV-ICVC 263 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~g-D~~~l~~-iLhd 263 (269)
...+|||||||+|.++..+++. .+++++|+ |..++.+++. .+++++.+|+.+ +.+.. |++++.. ++|.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 3479999999999999999887 78999998 7888776642 679999999987 55554 9999876 8887
Q ss_pred CC
Q 024350 264 YL 265 (269)
Q Consensus 264 ~~ 265 (269)
+.
T Consensus 110 ~~ 111 (243)
T 3d2l_A 110 LQ 111 (243)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 96
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.22 E-value=8.1e-07 Score=75.55 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=59.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----------------------CCCceEEecccCC-
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----------------------YPGIDHVGGDLFE- 247 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----------------------~~ri~~~~gD~~~- 247 (269)
...+|||||||+|..+..|++. +.+++++|+ |.+++.+++ ..+|+++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4579999999999999999987 568999997 777776531 2579999999998
Q ss_pred cCC--CC-cEEEeccccccCCCC
Q 024350 248 SVP--KA-DTIFMKVICVCYLNS 267 (269)
Q Consensus 248 ~~P--~g-D~~~l~~iLhd~~d~ 267 (269)
+.+ .. |+++.+.+||..+++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~ 168 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPG 168 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGG
T ss_pred CcccCCCEEEEEEhhhhhhCCHH
Confidence 443 33 999999999887654
No 97
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.21 E-value=1.2e-06 Score=75.95 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=61.7
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC---------CCceEEecccCC-cC
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY---------PGIDHVGGDLFE-SV 249 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~---------~ri~~~~gD~~~-~~ 249 (269)
...+++.++ . ...+|||||||+|.++..++++ +.+++.+|+ |.+++.+++. .+|+++.+|+.+ +.
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 445566655 3 3349999999999999999988 568899997 7888777642 679999999998 55
Q ss_pred CCC-cEEEec-cccccCC
Q 024350 250 PKA-DTIFMK-VICVCYL 265 (269)
Q Consensus 250 P~g-D~~~l~-~iLhd~~ 265 (269)
+.. |++++. .++|.++
T Consensus 148 ~~~fD~v~~~~~~~~~~~ 165 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELD 165 (299)
T ss_dssp SCCEEEEEECHHHHTTSC
T ss_pred CCCcCEEEECCcccccCC
Confidence 544 988765 6676655
No 98
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.21 E-value=5.1e-07 Score=73.66 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=49.8
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCcCC------C
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFESVP------K 251 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~~P------~ 251 (269)
+++.++......+|+|||||+|.++..+++.+|+.+++++|+ |..++.+++. .+++++.+|++++++ .
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 100 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGR 100 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccC
Confidence 444443124668999999999999999999999999999998 7888877764 179999999988544 3
Q ss_pred C-cEEEec
Q 024350 252 A-DTIFMK 258 (269)
Q Consensus 252 g-D~~~l~ 258 (269)
. |++++.
T Consensus 101 ~fD~i~~n 108 (215)
T 4dzr_A 101 PWHAIVSN 108 (215)
T ss_dssp CBSEEEEC
T ss_pred cccEEEEC
Confidence 3 999985
No 99
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=1.2e-06 Score=69.45 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC-C-cE
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK-A-DT 254 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~-g-D~ 254 (269)
++..++ .....+|+|||||+|.++..+++ +..+++++|. |..++.+++. ++++++.+|+.+++|. . |+
T Consensus 27 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 103 (183)
T 2yxd_A 27 SIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNK 103 (183)
T ss_dssp HHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSE
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcE
Confidence 444455 55567999999999999999998 8889999997 7777766542 6899999999886664 3 99
Q ss_pred EEeccc
Q 024350 255 IFMKVI 260 (269)
Q Consensus 255 ~~l~~i 260 (269)
+++..+
T Consensus 104 i~~~~~ 109 (183)
T 2yxd_A 104 AFIGGT 109 (183)
T ss_dssp EEECSC
T ss_pred EEECCc
Confidence 998876
No 100
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.20 E-value=5.3e-06 Score=67.22 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCC--CCeEEEeehhHHHHhCCCCCCceEEecccCCc
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP--HIKGINYDLLYVIKNAPSYPGIDHVGGDLFES 248 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~~ 248 (269)
.+.+.+..+....+|+|||||+|.++..+++++| +.+++.+|+.+. ...++++++.+|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence 4455555245568999999999999999999998 689999998652 2347899999999873
No 101
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.20 E-value=1.3e-06 Score=84.88 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=63.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCC------------CCCceEEecccCC-cCCC-C-cEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPS------------YPGIDHVGGDLFE-SVPK-A-DTI 255 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~------------~~ri~~~~gD~~~-~~P~-g-D~~ 255 (269)
...+|||||||+|.++..+++.. |..+++++|+ |..++.|++ .++|+++.+|+.+ +.+. . |++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 55799999999999999999998 5679999997 777776643 2679999999988 5553 4 999
Q ss_pred EeccccccCCCC
Q 024350 256 FMKVICVCYLNS 267 (269)
Q Consensus 256 ~l~~iLhd~~d~ 267 (269)
++..+||.++++
T Consensus 801 V~~eVLeHL~dp 812 (950)
T 3htx_A 801 TCLEVIEHMEED 812 (950)
T ss_dssp EEESCGGGSCHH
T ss_pred EEeCchhhCChH
Confidence 999999998864
No 102
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.18 E-value=1.5e-06 Score=77.02 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCcCCCC-cE
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFESVPKA-DT 254 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~~P~g-D~ 254 (269)
..+++.++ .....+|+|||||+|.++..+++.+|+.+++++|. |.+++.+++. -.++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556654 33456899999999999999999999999999998 6677766542 34778999998754544 99
Q ss_pred EEecccccc
Q 024350 255 IFMKVICVC 263 (269)
Q Consensus 255 ~~l~~iLhd 263 (269)
+++...+|.
T Consensus 265 Iv~~~~~~~ 273 (343)
T 2pjd_A 265 IISNPPFHD 273 (343)
T ss_dssp EEECCCCCS
T ss_pred EEECCCccc
Confidence 999999885
No 103
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.18 E-value=1.7e-06 Score=70.48 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCC-C-cEEEeccccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPK-A-DTIFMKVICV 262 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~-g-D~~~l~~iLh 262 (269)
....+|||||||+|.....++.. ++.+++++|. |..++.+++. .+++++.+|+.+ +.|. . |++++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 34579999999999985555544 6779999997 7777766542 689999999988 6664 3 9999999999
Q ss_pred cCC
Q 024350 263 CYL 265 (269)
Q Consensus 263 d~~ 265 (269)
.++
T Consensus 101 ~~~ 103 (209)
T 2p8j_A 101 HMR 103 (209)
T ss_dssp GSC
T ss_pred hCC
Confidence 885
No 104
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.18 E-value=1.2e-06 Score=73.96 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=56.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCC-C--CcEEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVP-K--ADTIFMKVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P-~--gD~~~l~~i 260 (269)
...+|+|||||+|.+++.+++..|..+++..|+ |..++.|+++ +||++..+|.++.++ . .|++++..+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 457999999999999999999999999999997 6777776642 689999999999655 2 398886543
No 105
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.17 E-value=1.6e-06 Score=71.98 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=53.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCCc----CCCC--cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFES----VPKA--DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~~----~P~g--D~~~l~ 258 (269)
...+|||||||+|.++..+++++|+.+++++|. +..++.+++ .++|+++.+|..+. +|.+ |.+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 457999999999999999999999999999997 777766543 26799999998662 5643 777654
No 106
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.17 E-value=1.7e-06 Score=70.74 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCC-eEEEeeh-hHHHHhCCCC-CCceEEecccCC-cCCC-C-cEEEeccccccCCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHI-KGINYDL-LYVIKNAPSY-PGIDHVGGDLFE-SVPK-A-DTIFMKVICVCYLN 266 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd~~d 266 (269)
...+|+|||||+|.++..+ .. +++++|. |..++.+++. ++++++.+|+.+ +.+. . |++++.++||.+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 5579999999999999887 45 8899997 7777766654 789999999987 6664 3 99999999999875
No 107
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.17 E-value=2.1e-06 Score=72.42 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=47.9
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCC--------------CCCCceEEecccCCc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAP--------------SYPGIDHVGGDLFES 248 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~--------------~~~ri~~~~gD~~~~ 248 (269)
++..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ..++|+++.+|.++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 4568999999999999999999999999999996 66765542 236899999999873
No 108
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.17 E-value=3.6e-06 Score=67.27 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=61.8
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------C--CceEEecccCCcCCC-C
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------P--GIDHVGGDLFESVPK-A 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~--ri~~~~gD~~~~~P~-g 252 (269)
.+++.+. .....+|+|||||+|.++..+++. ..+++++|+ |..++.+++. + |++++.+|+.+..+. .
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4455555 556689999999999999999988 778999997 7777766542 3 599999999986654 4
Q ss_pred -cEEEecccccc
Q 024350 253 -DTIFMKVICVC 263 (269)
Q Consensus 253 -D~~~l~~iLhd 263 (269)
|++++...+|.
T Consensus 120 ~D~v~~~~~~~~ 131 (194)
T 1dus_A 120 YNKIITNPPIRA 131 (194)
T ss_dssp EEEEEECCCSTT
T ss_pred ceEEEECCCccc
Confidence 99999887773
No 109
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.17 E-value=2.3e-06 Score=71.24 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCCC-cEEEecc-cccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPKA-DTIFMKV-ICVC 263 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~g-D~~~l~~-iLhd 263 (269)
...+|||||||+|.++..+++. ..+++++|. |.+++.+++. .+++++.+|+.+ +.+.. |++++.. +||.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 4579999999999999999988 467899997 7888776643 289999999987 55544 9999998 9998
Q ss_pred CCC
Q 024350 264 YLN 266 (269)
Q Consensus 264 ~~d 266 (269)
+++
T Consensus 115 ~~~ 117 (246)
T 1y8c_A 115 IID 117 (246)
T ss_dssp CCS
T ss_pred cCC
Confidence 843
No 110
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.16 E-value=3.3e-06 Score=75.12 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=63.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCCCC-c
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVPKA-D 253 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P~g-D 253 (269)
.+++.+. ..+..+|||||||+|.++..++++ +..+++.+|..+.++.+++ .++|+++.+|+.+ +.|.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 3445544 345579999999999999998875 6678999998666655543 1789999999988 56654 9
Q ss_pred EEEeccccccCCCC
Q 024350 254 TIFMKVICVCYLNS 267 (269)
Q Consensus 254 ~~~l~~iLhd~~d~ 267 (269)
+++...++|.|..+
T Consensus 119 ~Ivs~~~~~~~~~~ 132 (348)
T 2y1w_A 119 IIISEPMGYMLFNE 132 (348)
T ss_dssp EEEECCCBTTBTTT
T ss_pred EEEEeCchhcCChH
Confidence 99999888877654
No 111
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.16 E-value=1.4e-06 Score=74.54 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=58.0
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cC------CCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SV------PKA- 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~------P~g- 252 (269)
..++..++ .....+|||||||+|.++..++++ ..+++.+|+ |.+++.+++.-+-.++.+|+.+ +. +..
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 34555555 566689999999999999999987 457899997 7788777643111133444433 22 223
Q ss_pred cEEEeccccccCCCC
Q 024350 253 DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 D~~~l~~iLhd~~d~ 267 (269)
|+++...+||.|+++
T Consensus 112 D~Vv~~~~l~~~~~~ 126 (261)
T 3iv6_A 112 DFVLNDRLINRFTTE 126 (261)
T ss_dssp SEEEEESCGGGSCHH
T ss_pred cEEEEhhhhHhCCHH
Confidence 999999999988653
No 112
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.14 E-value=2.2e-06 Score=69.90 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=54.5
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCCcCCC-C-cEEEecc
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFESVPK-A-DTIFMKV 259 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~~~P~-g-D~~~l~~ 259 (269)
..+|+|||||+|.++..+++.+|+.+++++|. |..++.++. .++|+++.+|+.+..|. . |+++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence 46999999999999999999999999999997 777776654 24599999999885453 4 9988643
No 113
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.14 E-value=5.2e-06 Score=69.70 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCCC-cE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPKA-DT 254 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~g-D~ 254 (269)
.++.... .....+|||||||+|.++..+++. +.+++++|+ |.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 345579999999999999999987 568999998 7888776542 479999999988 45544 99
Q ss_pred EEec-cccccCC
Q 024350 255 IFMK-VICVCYL 265 (269)
Q Consensus 255 ~~l~-~iLhd~~ 265 (269)
+++. ..+|.++
T Consensus 109 v~~~~~~~~~~~ 120 (252)
T 1wzn_A 109 VTMFFSTIMYFD 120 (252)
T ss_dssp EEECSSGGGGSC
T ss_pred EEEcCCchhcCC
Confidence 8875 4455443
No 114
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.13 E-value=3.7e-06 Score=69.76 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=63.7
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----CCceEEecccCCcCC-C-C-cE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----PGIDHVGGDLFESVP-K-A-DT 254 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~ri~~~~gD~~~~~P-~-g-D~ 254 (269)
.+++.+. .....+|+|||||+|.++..+++.. .+++++|. |..++.+++. .+++++.+|+.+..| . . |+
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 3445555 5566799999999999999999987 67899997 7777766542 389999999987544 2 3 99
Q ss_pred EEeccccccCCC
Q 024350 255 IFMKVICVCYLN 266 (269)
Q Consensus 255 ~~l~~iLhd~~d 266 (269)
+++..++|.+++
T Consensus 138 v~~~~~~~~~~~ 149 (231)
T 1vbf_A 138 VVVWATAPTLLC 149 (231)
T ss_dssp EEESSBBSSCCH
T ss_pred EEECCcHHHHHH
Confidence 999999997753
No 115
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.13 E-value=4.8e-06 Score=69.94 Aligned_cols=65 Identities=15% Similarity=0.327 Sum_probs=52.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCC------------CCCCceEEecccCC--c--CCCC--c
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAP------------SYPGIDHVGGDLFE--S--VPKA--D 253 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~------------~~~ri~~~~gD~~~--~--~P~g--D 253 (269)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ..++|+++.+|+.+ + ++.+ |
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 457899999999999999999999999999997 67765432 23789999999986 2 4544 8
Q ss_pred EEEe
Q 024350 254 TIFM 257 (269)
Q Consensus 254 ~~~l 257 (269)
.+++
T Consensus 126 ~v~~ 129 (235)
T 3ckk_A 126 KMFF 129 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 116
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.13 E-value=2.4e-06 Score=74.90 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=56.3
Q ss_pred cEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC---cCCC-C-cEEEeccccc
Q 024350 195 KKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE---SVPK-A-DTIFMKVICV 262 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~---~~P~-g-D~~~l~~iLh 262 (269)
.+|||||||.|.+++.+++++|+.+.+++|+ |.+++.+++ .+|++++.+|.++ ..+. . |+|++.-..|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999998 888887764 2799999999876 2443 4 9998754433
No 117
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.12 E-value=6.1e-06 Score=69.48 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=60.7
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCc-CCC-
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFES-VPK- 251 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~-~P~- 251 (269)
.++..++ +....+|||+|||+|.++..+++. .|..+++.+|. |..++.+++ .++|+++.+|+.+. +|.
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 4556666 666789999999999999999999 78999999997 777776653 36899999999884 774
Q ss_pred C-cEEEe
Q 024350 252 A-DTIFM 257 (269)
Q Consensus 252 g-D~~~l 257 (269)
. |++++
T Consensus 166 ~~D~v~~ 172 (258)
T 2pwy_A 166 AYDGVAL 172 (258)
T ss_dssp CEEEEEE
T ss_pred CcCEEEE
Confidence 3 99887
No 118
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.11 E-value=2.1e-06 Score=70.02 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCC-cCCC-C-cEEEecccccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFE-SVPK-A-DTIFMKVICVC 263 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd 263 (269)
....+|||||||+|.++..+++..+. +++++|+ |.+++.+++ .++++++.+|+.+ +++. . |+++...++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 34579999999999999999998775 8899997 777766553 3689999999988 6664 4 99998888764
Q ss_pred C
Q 024350 264 Y 264 (269)
Q Consensus 264 ~ 264 (269)
.
T Consensus 120 ~ 120 (215)
T 2pxx_A 120 L 120 (215)
T ss_dssp H
T ss_pred h
Confidence 3
No 119
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.11 E-value=6.8e-06 Score=72.83 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=57.7
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC-------CCceEEecccCC-cCC-CC-c
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY-------PGIDHVGGDLFE-SVP-KA-D 253 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~-------~ri~~~~gD~~~-~~P-~g-D 253 (269)
+.+... ..+..+|||||||+|.++..++++ +..+++++|..++++.+++. ++|+++.+|+.+ ++| +. |
T Consensus 56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence 334444 445679999999999999999987 55689999986677666542 789999999988 677 34 9
Q ss_pred EEEeccc
Q 024350 254 TIFMKVI 260 (269)
Q Consensus 254 ~~~l~~i 260 (269)
+++...+
T Consensus 134 ~Ivs~~~ 140 (340)
T 2fyt_A 134 VIISEWM 140 (340)
T ss_dssp EEEECCC
T ss_pred EEEEcCc
Confidence 9997664
No 120
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.11 E-value=2.6e-06 Score=73.66 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=55.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCC-CC---cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVP-KA---DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P-~g---D~~~l~ 258 (269)
...+|+|||||+|.++..+++. |+.+++.+|+ |..++.++++ .||+++.+|++++.+ +- |+++..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence 3468999999999999999999 9999999998 8888777642 479999999998655 45 988875
No 121
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.11 E-value=3.4e-06 Score=69.57 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=55.4
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cCCC-C-cEEEeccccccCCC
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SVPK-A-DTIFMKVICVCYLN 266 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~P~-g-D~~~l~~iLhd~~d 266 (269)
..+|||||||+|.++..++++ +++|. |..++.+++. +++++.+|+.+ +.+. . |++++..+||.+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence 579999999999999998765 88897 7777776655 89999999877 5554 4 99999999998865
No 122
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.10 E-value=1.2e-05 Score=66.97 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=55.6
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHh----CCCCCCceEEecccCCc---CC--CC-cEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKN----APSYPGIDHVGGDLFES---VP--KA-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~----a~~~~ri~~~~gD~~~~---~P--~g-D~~~l~~ 259 (269)
+....+|+|||||+|.++..+++.+|+.+++.+|. |..++. ++..++++++.+|+.++ .| .. |+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45567999999999999999999999889999997 666644 34458899999999762 22 33 8877
Q ss_pred ccccCCCC
Q 024350 260 ICVCYLNS 267 (269)
Q Consensus 260 iLhd~~d~ 267 (269)
|+.++.
T Consensus 149 --~~~~~~ 154 (230)
T 1fbn_A 149 --EDVAQP 154 (230)
T ss_dssp --ECCCST
T ss_pred --EecCCh
Confidence 555543
No 123
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.10 E-value=3.1e-06 Score=68.73 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=56.7
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-CCceEEecccCCcCCCC-cEEEeccccccCCC
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-PGIDHVGGDLFESVPKA-DTIFMKVICVCYLN 266 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~~~P~g-D~~~l~~iLhd~~d 266 (269)
....+|+|||||+|.++..+++. +..+++.+|+ |..++.+++. .+++++.+|+.+ +|.. |++++...+|.+++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence 35579999999999999999987 5557999998 7888777653 489999999987 4544 99999999988765
No 124
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.08 E-value=1e-05 Score=63.41 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeehhHHHHhCCCCCCceEEecccCC-c--------CCC-
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDLLYVIKNAPSYPGIDHVGGDLFE-S--------VPK- 251 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~-~--------~P~- 251 (269)
.+++.+.......+|+|||||+|.++..+++.+ |+.+++++|+.+++ ..++++++.+|+.+ + ++.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCC
Confidence 344444423455799999999999999999995 78999999986622 23789999999988 4 664
Q ss_pred C-cEEEeccccccCC
Q 024350 252 A-DTIFMKVICVCYL 265 (269)
Q Consensus 252 g-D~~~l~~iLhd~~ 265 (269)
. |+++....+|..+
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 4 9999988887554
No 125
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.08 E-value=5.9e-06 Score=67.26 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=56.8
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCCC-cEEEecccccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPKA-DTIFMKVICVC 263 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~g-D~~~l~~iLhd 263 (269)
....+|||||||+|.++..+++ +|..+++++|+ |..++.+++. +.++++.+|+.+..++. |++++...+|.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3457999999999999999775 67789999998 7777766542 34999999998855555 99998777664
No 126
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.07 E-value=2.1e-06 Score=71.73 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=56.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCC----CC-cEEEec
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVP----KA-DTIFMK 258 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P----~g-D~~~l~ 258 (269)
.+..+|||||||+|..+..+++.+|+.+++.+|+ |..++.+++. ++|+++.+|+.+..| .. |++++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3567999999999999999999999999999998 7888776542 589999999988544 33 999865
Q ss_pred c
Q 024350 259 V 259 (269)
Q Consensus 259 ~ 259 (269)
.
T Consensus 150 ~ 150 (232)
T 3ntv_A 150 A 150 (232)
T ss_dssp T
T ss_pred C
Confidence 3
No 127
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.07 E-value=4.5e-06 Score=70.48 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=57.6
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCC-cCCC-CcE
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFE-SVPK-ADT 254 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~-~~P~-gD~ 254 (269)
..+++..+ .....+|+|||||+|.++..++++. .+++++|+ |..++.+++ .++++++.+|+.+ +++. .+.
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 96 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 96 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe
Confidence 34555555 5566799999999999999999996 67899997 667765543 3789999999988 6664 354
Q ss_pred EEecccc
Q 024350 255 IFMKVIC 261 (269)
Q Consensus 255 ~~l~~iL 261 (269)
.++.+.-
T Consensus 97 ~vv~nlP 103 (244)
T 1qam_A 97 KIFGNIP 103 (244)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 5555433
No 128
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.06 E-value=5e-06 Score=73.95 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=57.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCCC-C-cEEEeccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVPK-A-DTIFMKVICV 262 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P~-g-D~~~l~~iLh 262 (269)
...+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ ++|. . |+++...+.|
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 4579999999999999999988 7779999998777766653 2679999999998 6774 4 9999876544
Q ss_pred cC
Q 024350 263 CY 264 (269)
Q Consensus 263 d~ 264 (269)
..
T Consensus 145 ~l 146 (349)
T 3q7e_A 145 CL 146 (349)
T ss_dssp TB
T ss_pred cc
Confidence 43
No 129
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.04 E-value=8.2e-06 Score=66.85 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=52.0
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCceEEecccCC-cCCC-C-cEEEeccc
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFE-SVPK-A-DTIFMKVI 260 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~-~~P~-g-D~~~l~~i 260 (269)
+++.+.......+|||||||+|.++..+. .+++++|..+. +++++.+|+.+ +.|. . |++++..+
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLS 124 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehh
Confidence 44443323455799999999999998873 57888997543 68899999988 5664 3 99999999
Q ss_pred cccCCC
Q 024350 261 CVCYLN 266 (269)
Q Consensus 261 Lhd~~d 266 (269)
|| |++
T Consensus 125 l~-~~~ 129 (215)
T 2zfu_A 125 LM-GTN 129 (215)
T ss_dssp CC-SSC
T ss_pred cc-ccC
Confidence 98 543
No 130
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.03 E-value=4.2e-06 Score=70.63 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=56.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEeccc----CCcCC----CC-cEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDL----FESVP----KA-DTI 255 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~----~~~~P----~g-D~~ 255 (269)
...+|||||||+|.++..+++++|+.+++.+|+ |.+++.++++ +||+++.+|. +++++ .. |++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 356999999999999999999999999999997 7888776542 5799999984 44555 23 999
Q ss_pred Eecccccc
Q 024350 256 FMKVICVC 263 (269)
Q Consensus 256 ~l~~iLhd 263 (269)
+..-.+|.
T Consensus 145 ~~npp~~~ 152 (254)
T 2h00_A 145 MCNPPFFA 152 (254)
T ss_dssp EECCCCC-
T ss_pred EECCCCcc
Confidence 88755553
No 131
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.02 E-value=5.3e-06 Score=72.15 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCcC--CC-C-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFESV--PK-A-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~~--P~-g-D~~ 255 (269)
++..+|||||||+|..++++++..|..+++++|+ |.+++.+++ .+|++++.+|.++.+ +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3568999999999999999999888889999997 788876643 369999999998743 32 3 998
Q ss_pred Eec
Q 024350 256 FMK 258 (269)
Q Consensus 256 ~l~ 258 (269)
+..
T Consensus 162 i~D 164 (294)
T 3adn_A 162 ISD 164 (294)
T ss_dssp EEC
T ss_pred EEC
Confidence 873
No 132
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.02 E-value=8.3e-06 Score=71.43 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCC-C-C
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVP-K-A 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P-~-g 252 (269)
.+++.++ .....+|||||||.|.++..+++..+ +.+++++|+ |..++.+++. ++|+++.+|+.+..| . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 3445555 55668999999999999999999988 488999997 7777766542 569999999987443 3 3
Q ss_pred -cEEEeccccccCC
Q 024350 253 -DTIFMKVICVCYL 265 (269)
Q Consensus 253 -D~~~l~~iLhd~~ 265 (269)
|+++....+|..+
T Consensus 145 fD~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP 158 (317)
T ss_dssp EEEEEECSBBSCCC
T ss_pred eEEEEEcCCHHHHH
Confidence 9999999998764
No 133
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.01 E-value=7.4e-06 Score=70.16 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=61.1
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~- 251 (269)
..++..++ +....+|||+|||+|.++..++++ .|..+++.+|+ |..++.+++. ++++++.+|+.+.+|.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34555566 666689999999999999999999 78999999997 7887766542 5899999999887664
Q ss_pred C-cEEEe
Q 024350 252 A-DTIFM 257 (269)
Q Consensus 252 g-D~~~l 257 (269)
. |++++
T Consensus 181 ~~D~V~~ 187 (277)
T 1o54_A 181 DVDALFL 187 (277)
T ss_dssp SEEEEEE
T ss_pred ccCEEEE
Confidence 3 99887
No 134
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.00 E-value=1.1e-05 Score=66.09 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------C-CceEEecccCCcCC---CC
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------P-GIDHVGGDLFESVP---KA 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~-ri~~~~gD~~~~~P---~g 252 (269)
++..++ .....+|+|||||+|.++..+++. ..+++.+|+ |..++.+++. + +|+++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344455 556689999999999999999998 788999997 7888776542 4 89999999988433 23
Q ss_pred cEEEeccc
Q 024350 253 DTIFMKVI 260 (269)
Q Consensus 253 D~~~l~~i 260 (269)
|++++...
T Consensus 124 D~v~~~~~ 131 (204)
T 3njr_A 124 EAVFIGGG 131 (204)
T ss_dssp SEEEECSC
T ss_pred CEEEECCc
Confidence 99987653
No 135
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.00 E-value=5.5e-06 Score=71.89 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=57.1
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCC-CC-cEEEeccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVP-KA-DTIFMKVI 260 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P-~g-D~~~l~~i 260 (269)
.+...+|+|||||+|.++..++.+.|+.+++.+|+ |.+++.|++. ++|+++.+|..+ +| .. |++++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC
Confidence 56778999999999988877777889999999997 8888887652 799999999987 34 34 99987654
No 136
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=97.99 E-value=4.8e-06 Score=70.37 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=55.2
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---CCC--C-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---VPK--A-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~P~--g-D~~~ 256 (269)
.+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.+++. ++|+++.+|..+. ++. . |+++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 3568999999999999999999998 899999998 7777766542 5899999998762 222 3 9998
Q ss_pred ecc
Q 024350 257 MKV 259 (269)
Q Consensus 257 l~~ 259 (269)
+..
T Consensus 142 ~d~ 144 (248)
T 3tfw_A 142 IDA 144 (248)
T ss_dssp ECS
T ss_pred ECC
Confidence 754
No 137
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.99 E-value=4.6e-06 Score=66.51 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC--C-
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK--A- 252 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~--g- 252 (269)
++..++ .....+|+|||||+|.++..+++.. .+++++|. |..++.+++. ++++++.+|+.+++|. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344445 5566899999999999999999988 78999997 7777766541 6899999998775553 3
Q ss_pred cEEEeccccccC
Q 024350 253 DTIFMKVICVCY 264 (269)
Q Consensus 253 D~~~l~~iLhd~ 264 (269)
|++++...+|++
T Consensus 102 D~v~~~~~~~~~ 113 (192)
T 1l3i_A 102 DIAVVGGSGGEL 113 (192)
T ss_dssp EEEEESCCTTCH
T ss_pred CEEEECCchHHH
Confidence 999998877653
No 138
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.98 E-value=6e-06 Score=70.90 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=57.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cC-CC-C-cEEEecc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SV-PK-A-DTIFMKV 259 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~-P~-g-D~~~l~~ 259 (269)
....+|||||||+|.++..+++. +..+++++|+ |..++.+++. .+|+++.+|+.+ +. +. . |++++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 35579999999999999998776 5668999997 7777766542 479999999998 56 33 4 9999999
Q ss_pred cccc
Q 024350 260 ICVC 263 (269)
Q Consensus 260 iLhd 263 (269)
+||.
T Consensus 142 ~l~~ 145 (298)
T 1ri5_A 142 SFHY 145 (298)
T ss_dssp CGGG
T ss_pred hhhh
Confidence 9986
No 139
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=97.98 E-value=8.2e-06 Score=71.92 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=55.8
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCC-CC-cEEEeccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVP-KA-DTIFMKVICV 262 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P-~g-D~~~l~~iLh 262 (269)
+..+|+|||||+|.++..++++ +..+++.+|..++++.+++ .++|+++.+|+.+ +.| +. |+++...+.|
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 3479999999999999998886 5568999998767766543 2689999999988 667 34 9999876555
Q ss_pred cC
Q 024350 263 CY 264 (269)
Q Consensus 263 d~ 264 (269)
..
T Consensus 117 ~l 118 (328)
T 1g6q_1 117 FL 118 (328)
T ss_dssp TB
T ss_pred hc
Confidence 43
No 140
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.98 E-value=8.7e-06 Score=67.87 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=45.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeehh--HHHHhC---CCC------CCceEEecccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDLL--YVIKNA---PSY------PGIDHVGGDLFE 247 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp--~vv~~a---~~~------~ri~~~~gD~~~ 247 (269)
...+|||||||+|.++..+++++|+.+++++|+- .+++.| ++. ++|+++.+|..+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 4579999999999999999999999999999973 444443 442 679999999865
No 141
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.98 E-value=1.9e-05 Score=68.79 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhchhhHHHHHHhcc-CCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------
Q 024350 166 NDVFSNGMLSHTSIVMEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------- 235 (269)
Q Consensus 166 ~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------- 235 (269)
.+.|+.++..... ..+++.+. ......+|||||||+|.++..+++ .+..+++.+|+ |.+++.+++.
T Consensus 9 lr~~~~~~k~~l~---~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 9 LRNFNNWMKSVLI---GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhhccHHHHHHHH---HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 4567766665332 22333222 023567999999999999999987 46778999997 6777665432
Q ss_pred -----CCceEEecccCC-c----CC--C-C-cEEEeccccccC
Q 024350 236 -----PGIDHVGGDLFE-S----VP--K-A-DTIFMKVICVCY 264 (269)
Q Consensus 236 -----~ri~~~~gD~~~-~----~P--~-g-D~~~l~~iLhd~ 264 (269)
.+++++.+|+.+ + ++ . . |+++...+||..
T Consensus 85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~ 127 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYS 127 (313)
T ss_dssp CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGG
T ss_pred cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhc
Confidence 379999999987 3 42 2 4 999999999875
No 142
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.98 E-value=2.5e-06 Score=70.60 Aligned_cols=73 Identities=10% Similarity=0.127 Sum_probs=58.4
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC---cCC-----CC-cE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE---SVP-----KA-DT 254 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~---~~P-----~g-D~ 254 (269)
+..+|||||||+|..+..++++.| +.+++.+|+ |..++.+++. ++|+++.+|+.+ ..+ .. |+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 457999999999999999999875 889999997 7788777652 589999999854 233 23 99
Q ss_pred EEeccccccCC
Q 024350 255 IFMKVICVCYL 265 (269)
Q Consensus 255 ~~l~~iLhd~~ 265 (269)
+++....|.+.
T Consensus 138 V~~d~~~~~~~ 148 (221)
T 3u81_A 138 VFLDHWKDRYL 148 (221)
T ss_dssp EEECSCGGGHH
T ss_pred EEEcCCcccch
Confidence 99987766553
No 143
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.98 E-value=9.2e-06 Score=69.15 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=55.2
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-------C---CCceEEecccCCc--------CCC
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-------Y---PGIDHVGGDLFES--------VPK 251 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-------~---~ri~~~~gD~~~~--------~P~ 251 (269)
.....+|||||||+|.++..+++++|+.+++.+|+ |..++.+++ . +||+++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 44567999999999999999999999999999998 677765532 2 3799999999874 343
Q ss_pred -C-cEEEec
Q 024350 252 -A-DTIFMK 258 (269)
Q Consensus 252 -g-D~~~l~ 258 (269)
. |++++.
T Consensus 114 ~~fD~Vv~n 122 (260)
T 2ozv_A 114 EHFHHVIMN 122 (260)
T ss_dssp TCEEEEEEC
T ss_pred CCcCEEEEC
Confidence 3 999886
No 144
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=97.98 E-value=6.8e-06 Score=70.93 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=52.0
Q ss_pred CccEEEEeCCCchHHH----HHHHHHCCCCeE--EEeeh-hHHHHhCCCC-------CCceE--EecccCC-c------C
Q 024350 193 HVKKLVDVGGGLGATL----NMIISKYPHIKG--INYDL-LYVIKNAPSY-------PGIDH--VGGDLFE-S------V 249 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~----~~l~~~~P~l~~--vv~Dl-p~vv~~a~~~-------~ri~~--~~gD~~~-~------~ 249 (269)
...+|||||||+|.++ ..++.++|+.++ +++|. +.+++.+++. +++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 3569999999999754 455677898854 99996 6777655431 34444 3444432 1 2
Q ss_pred CC-C-cEEEeccccccCCCC
Q 024350 250 PK-A-DTIFMKVICVCYLNS 267 (269)
Q Consensus 250 P~-g-D~~~l~~iLhd~~d~ 267 (269)
+. . |++++.++||.++|.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~ 151 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI 151 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH
T ss_pred CCCceeEEEEeeeeeecCCH
Confidence 33 3 999999999999874
No 145
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.94 E-value=5.1e-06 Score=69.18 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=57.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcC-----CCC-cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESV-----PKA-DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~-----P~g-D~~~l~ 258 (269)
...+|||||||+|..+..+++.+|+.+++.+|+ |..++.+++. ++|+++.+|+.+.. +.. |++++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 457999999999999999999999999999998 7777766542 58999999998732 233 999987
Q ss_pred ccccc
Q 024350 259 VICVC 263 (269)
Q Consensus 259 ~iLhd 263 (269)
...++
T Consensus 134 ~~~~~ 138 (233)
T 2gpy_A 134 AAKGQ 138 (233)
T ss_dssp GGGSC
T ss_pred CCHHH
Confidence 66543
No 146
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.94 E-value=4.1e-06 Score=66.51 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=54.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---CCCC-cEEEecc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---VPKA-DTIFMKV 259 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~P~g-D~~~l~~ 259 (269)
....+|+|||||+|.++..++++ +..+++.+|+ |.+++.+++. ++++++.+|+.+. .+.. |++++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 34579999999999999999987 7778999998 7788766542 5799999999873 2234 9998865
Q ss_pred cc
Q 024350 260 IC 261 (269)
Q Consensus 260 iL 261 (269)
.+
T Consensus 109 ~~ 110 (177)
T 2esr_A 109 PY 110 (177)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 147
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.94 E-value=4.2e-06 Score=70.19 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=55.9
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-cC----CCC-cEEEe
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-SV----PKA-DTIFM 257 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~~----P~g-D~~~l 257 (269)
++...+|+|||||+|..+..+++..|+.+++.+|. |..++.+++ .++|+++.+|+.+ +. +.. |+++.
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34567999999999999999999999999999997 777776654 2579999999876 43 223 99987
Q ss_pred ccc
Q 024350 258 KVI 260 (269)
Q Consensus 258 ~~i 260 (269)
..+
T Consensus 148 ~~~ 150 (240)
T 1xdz_A 148 RAV 150 (240)
T ss_dssp ECC
T ss_pred ecc
Confidence 653
No 148
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.93 E-value=1.2e-05 Score=67.75 Aligned_cols=73 Identities=16% Similarity=0.047 Sum_probs=58.4
Q ss_pred CccEEEEeCCCchHHHHHHHHH--CCCCeEEEeeh-hHHHHhCCCC---C-------C----------------------
Q 024350 193 HVKKLVDVGGGLGATLNMIISK--YPHIKGINYDL-LYVIKNAPSY---P-------G---------------------- 237 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~--~P~l~~vv~Dl-p~vv~~a~~~---~-------r---------------------- 237 (269)
...+|+|+|||+|.++..+++. +|..+++.+|+ |.+++.+++. . +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999998 88889999998 7888777632 2 2
Q ss_pred ---ce-------------EEecccCCcC------CC-C-cEEEeccccccCC
Q 024350 238 ---ID-------------HVGGDLFESV------PK-A-DTIFMKVICVCYL 265 (269)
Q Consensus 238 ---i~-------------~~~gD~~~~~------P~-g-D~~~l~~iLhd~~ 265 (269)
|+ ++.+|+++.. +. . |+|+....++...
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~ 182 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERT 182 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSS
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccc
Confidence 77 9999999865 43 4 9999876665443
No 149
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.93 E-value=1.4e-05 Score=68.18 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=58.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCC---------CCCceEEecccCC-cCC
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPS---------YPGIDHVGGDLFE-SVP 250 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~---------~~ri~~~~gD~~~-~~P 250 (269)
.++..++ .....+|||||||+|.++..+++. .|..+++.+|+ |..++.+++ .++++++.+|+.+ +++
T Consensus 90 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 90 QIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 4555566 666679999999999999999996 58899999998 777776543 2589999999988 455
Q ss_pred C-C-cEEEe
Q 024350 251 K-A-DTIFM 257 (269)
Q Consensus 251 ~-g-D~~~l 257 (269)
. . |++++
T Consensus 169 ~~~~D~v~~ 177 (280)
T 1i9g_A 169 DGSVDRAVL 177 (280)
T ss_dssp TTCEEEEEE
T ss_pred CCceeEEEE
Confidence 3 4 99887
No 150
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.92 E-value=1.3e-05 Score=72.00 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCCCC-cEEEecccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVPKA-DTIFMKVIC 261 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P~g-D~~~l~~iL 261 (269)
.....+|||||||+|.++..++++ ...+++.+|...+++.+++ .++|+++.+|+.+ +.|.. |+++...+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 345689999999999999999988 3348999998766665543 2679999999988 56644 999986666
Q ss_pred ccCC
Q 024350 262 VCYL 265 (269)
Q Consensus 262 hd~~ 265 (269)
|...
T Consensus 140 ~~l~ 143 (376)
T 3r0q_C 140 YFLL 143 (376)
T ss_dssp TTBT
T ss_pred hccc
Confidence 6554
No 151
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.92 E-value=8.7e-06 Score=68.97 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=54.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCC-cCCCC--cEEEeccccccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFE-SVPKA--DTIFMKVICVCYL 265 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~-~~P~g--D~~~l~~iLhd~~ 265 (269)
...+|||||||+|.++..++++ ..+++++|. |.+++.+++...-.++.+|+.+ ++|.+ |++++..+++.|.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 4579999999999999999987 568899997 7777766543212388899987 66643 9999988666553
No 152
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.92 E-value=3.1e-06 Score=70.74 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=58.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-C-cEEEeccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK-A-DTIFMKVICV 262 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~-g-D~~~l~~iLh 262 (269)
...+|||||||+|.++..+++.. .+++.+|+ |..++.+++. ++++++.+|+.+..+. . |++++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 45799999999999999999974 78899997 7777766542 5899999999883343 4 9999998888
Q ss_pred cCCC
Q 024350 263 CYLN 266 (269)
Q Consensus 263 d~~d 266 (269)
..++
T Consensus 156 ~~~~ 159 (241)
T 3gdh_A 156 GPDY 159 (241)
T ss_dssp SGGG
T ss_pred Ccch
Confidence 7654
No 153
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.91 E-value=8.5e-06 Score=68.49 Aligned_cols=73 Identities=10% Similarity=-0.021 Sum_probs=59.5
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----CCCceEEecccCCc-CCC-CcEEEeccccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----YPGIDHVGGDLFES-VPK-ADTIFMKVICV 262 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----~~ri~~~~gD~~~~-~P~-gD~~~l~~iLh 262 (269)
+..+.+|+|||||.|-++..+. |..+.+.+|+ +..++.++. ..+.++...|+... .|. +|++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 4457899999999999999888 9999999998 777776664 26788999999984 444 49999998888
Q ss_pred cCCC
Q 024350 263 CYLN 266 (269)
Q Consensus 263 d~~d 266 (269)
...+
T Consensus 180 ~LE~ 183 (253)
T 3frh_A 180 LLER 183 (253)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6543
No 154
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=97.91 E-value=1.2e-05 Score=66.75 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=53.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCCcCC---C-C-cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFESVP---K-A-DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~~~P---~-g-D~~~l~ 258 (269)
...+|||||||+|.++..+++. ..+++.+|+ |..++.+++ .++++++.+|+.+.+| . . |+++..
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 4579999999999999999998 568999997 788877765 4789999999977443 3 3 998875
No 155
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.91 E-value=9.2e-06 Score=64.76 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=55.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcC------CCC-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESV------PKA-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~------P~g-D~~~ 256 (269)
....+|+|+|||+|.++..+++ .+..+++.+|+ |..++.+++. ++++++.+|+.+.. +.. |+++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3457999999999999999887 56778999998 7888777642 57999999998732 334 9999
Q ss_pred eccccc
Q 024350 257 MKVICV 262 (269)
Q Consensus 257 l~~iLh 262 (269)
+...+|
T Consensus 122 ~~~~~~ 127 (187)
T 2fhp_A 122 LDPPYA 127 (187)
T ss_dssp ECCCGG
T ss_pred ECCCCC
Confidence 877655
No 156
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.91 E-value=6.6e-06 Score=69.70 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-cCC----CC-cEEEec
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-SVP----KA-DTIFMK 258 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~~P----~g-D~~~l~ 258 (269)
....+|+|||||+|..+..++..+|+.+++.+|. +..++.+++ ..+|+++.+|+.+ +.. .. |+++.+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999996 777766654 2569999999876 321 33 999876
Q ss_pred cc
Q 024350 259 VI 260 (269)
Q Consensus 259 ~i 260 (269)
.+
T Consensus 159 a~ 160 (249)
T 3g89_A 159 AV 160 (249)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 157
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.90 E-value=1.2e-05 Score=69.24 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=55.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCc--CC-CC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFES--VP-KA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~--~P-~g-D~~~l 257 (269)
+..+|+|||||+|..++++++.+|..+++++|+ |.+++.+++ .+|++++.+|.++. .+ +. |++++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998878889999998 788876643 37999999998873 22 34 99988
Q ss_pred ccc
Q 024350 258 KVI 260 (269)
Q Consensus 258 ~~i 260 (269)
.-.
T Consensus 155 d~~ 157 (275)
T 1iy9_A 155 DST 157 (275)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
No 158
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.90 E-value=1.3e-05 Score=69.16 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=57.0
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCCC
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA 252 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g 252 (269)
..+++.++ .....+|+|||||+|.++..++++.. +++++|+ |..++.+++. ++++++.+|+.+ ++|.-
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f 94 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 94 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence 34556665 55668999999999999999999854 7889997 6676655431 589999999988 66655
Q ss_pred cEEEec
Q 024350 253 DTIFMK 258 (269)
Q Consensus 253 D~~~l~ 258 (269)
|+++..
T Consensus 95 D~vv~n 100 (285)
T 1zq9_A 95 DTCVAN 100 (285)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887763
No 159
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.89 E-value=1.3e-05 Score=71.18 Aligned_cols=76 Identities=17% Similarity=0.024 Sum_probs=61.1
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~P~- 251 (269)
..++.... |....+|+|+|||+|.++++++... |+.+++++|+ |.+++.++++ ++|+++.+|+.+ +.|.
T Consensus 193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 34455555 7777899999999999999999998 9999999997 7888776642 489999999998 4443
Q ss_pred C-cEEEec
Q 024350 252 A-DTIFMK 258 (269)
Q Consensus 252 g-D~~~l~ 258 (269)
. |+++..
T Consensus 272 ~~D~Ii~n 279 (354)
T 3tma_A 272 EVDRILAN 279 (354)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 4 888873
No 160
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.89 E-value=1.2e-05 Score=64.87 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-c-CC-CC-cEEEe
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-S-VP-KA-DTIFM 257 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~-~P-~g-D~~~l 257 (269)
.....+|+|||||+|.++..+++++ |+.+++.+|+ |..++.+++. ++++++.+|+.+ + .+ .. |++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3455799999999999999999986 7889999997 7777776542 689999999876 2 33 34 99987
Q ss_pred cccc
Q 024350 258 KVIC 261 (269)
Q Consensus 258 ~~iL 261 (269)
...+
T Consensus 100 ~~~~ 103 (197)
T 3eey_A 100 NLGY 103 (197)
T ss_dssp EESB
T ss_pred cCCc
Confidence 7544
No 161
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.88 E-value=1.3e-05 Score=64.03 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=52.0
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC--cCC-CC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE--SVP-KA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~--~~P-~g-D~~~l~ 258 (269)
++...+|+|||||+|.++..++++ ..+++.+|+ |..++.+++. ++|+++..|+.. +.+ .. |++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 345679999999999999999988 788999997 7888777642 789999977654 234 33 998776
No 162
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.87 E-value=1.3e-05 Score=67.97 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=56.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-CCceEEecccCC-cCCC-C-cEEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-PGIDHVGGDLFE-SVPK-A-DTIFMKVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-~ri~~~~gD~~~-~~P~-g-D~~~l~~i 260 (269)
...+|+|||||+|.++..+++.+|+.+++++|. |..++.+++. ++++++.+|+.+ +++. . |+++...+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 157 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence 457999999999999999999999999999997 7777766553 789999999977 5554 3 99886544
No 163
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.86 E-value=5.4e-06 Score=69.52 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=50.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC---cCCC-C-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE---SVPK-A-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~---~~P~-g-D~~~l 257 (269)
...+|||||||.|..+..+++..|. +.+++|+ |.+++.+++. .+++++.+|... ++|. . |.+++
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 4579999999999999999988885 6889997 8888877642 568888888654 4564 3 77765
No 164
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.86 E-value=4.5e-06 Score=68.91 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=54.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCcCC-------CC-cEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFESVP-------KA-DTI 255 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~~P-------~g-D~~ 255 (269)
+..+|||||||+|..+..+++++| +.+++.+|+ |..++.+++ .++|+++.+|..+.+| .. |++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 457999999999999999999999 889999997 777776653 2579999999976322 23 999
Q ss_pred Eeccc
Q 024350 256 FMKVI 260 (269)
Q Consensus 256 ~l~~i 260 (269)
++...
T Consensus 138 ~~d~~ 142 (223)
T 3duw_A 138 FIDAD 142 (223)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 87544
No 165
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.85 E-value=2.8e-05 Score=65.86 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=58.9
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--CCceEEecccCC-cCCC--CcEE
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--PGIDHVGGDLFE-SVPK--ADTI 255 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~-~~P~--gD~~ 255 (269)
..+++..+ .....+|+|||||+|.++..++++ +..+++++|+ +..++.+++. .+++++.+|+.+ ++|. ++..
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 34556655 556679999999999999999987 5678999997 6777766654 679999999998 6664 2455
Q ss_pred Eecccc
Q 024350 256 FMKVIC 261 (269)
Q Consensus 256 ~l~~iL 261 (269)
++.|.-
T Consensus 99 vv~NlP 104 (249)
T 3ftd_A 99 VVGNLP 104 (249)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 555543
No 166
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.84 E-value=6.5e-06 Score=71.81 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCC-c-C-CC-C-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFE-S-V-PK-A-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~-~-~-P~-g-D~~ 255 (269)
++..+|||||||.|.++..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ . . +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999888889999998 777776543 3789999999987 2 1 43 4 999
Q ss_pred EeccccccCCC
Q 024350 256 FMKVICVCYLN 266 (269)
Q Consensus 256 ~l~~iLhd~~d 266 (269)
++....+.+++
T Consensus 174 i~d~~~~~~~~ 184 (304)
T 3bwc_A 174 IIDTTDPAGPA 184 (304)
T ss_dssp EEECC------
T ss_pred EECCCCccccc
Confidence 98766665543
No 167
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.84 E-value=1.8e-06 Score=73.35 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCcCCC--CcEEEecccccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFESVPK--ADTIFMKVICVC 263 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~~P~--gD~~~l~~iLhd 263 (269)
..+.+|+|||||.|-++..+...+|+.+.+.+|+ +..++.++.+ .+.++...|+..+.|+ +|++++.-++|.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999998 6777766542 5688999999996564 499999999997
Q ss_pred CCCC
Q 024350 264 YLNS 267 (269)
Q Consensus 264 ~~d~ 267 (269)
..++
T Consensus 211 Le~q 214 (281)
T 3lcv_B 211 LETQ 214 (281)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6554
No 168
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=97.82 E-value=5e-06 Score=75.43 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=58.8
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEeccc----CC--cCC-CC
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDL----FE--SVP-KA 252 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~----~~--~~P-~g 252 (269)
...+++.++ .....+|||||||+|.++..++++ ..+++++|. +.+++.+++. .+......| .+ +.+ ..
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 345666666 566789999999999999999987 448899997 6777777654 233222111 11 223 33
Q ss_pred -cEEEeccccccCCCC
Q 024350 253 -DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 -D~~~l~~iLhd~~d~ 267 (269)
|+++..++||.++|.
T Consensus 172 fD~I~~~~vl~h~~d~ 187 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV 187 (416)
T ss_dssp EEEEEEESCGGGCTTH
T ss_pred EEEEEECChHHhcCCH
Confidence 999999999999763
No 169
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=66.70 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=53.5
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hH----HHHhCCCCCCceEEecccCCc--CC---CC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LY----VIKNAPSYPGIDHVGGDLFES--VP---KA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~----vv~~a~~~~ri~~~~gD~~~~--~P---~g-D~~~l~ 258 (269)
+....+|+|||||+|.++..+++.+ |+.+++.+|+ |. .++.++..++++++.+|+.++ +| .. |++++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4556799999999999999999997 7889999998 43 344454458999999999873 33 23 998873
No 170
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.82 E-value=1.9e-05 Score=66.96 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=55.2
Q ss_pred CC-CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---CCC-C-cEEE
Q 024350 191 FE-HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---VPK-A-DTIF 256 (269)
Q Consensus 191 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~P~-g-D~~~ 256 (269)
.+ ...+|||||||+|.++..++++.+. +++.+|+ |..++.++++ +||+++.+|+.+. ++. . |+++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 5689999999999999999999876 8999997 7777766542 5899999999883 333 3 9998
Q ss_pred ecc
Q 024350 257 MKV 259 (269)
Q Consensus 257 l~~ 259 (269)
..-
T Consensus 125 ~np 127 (259)
T 3lpm_A 125 CNP 127 (259)
T ss_dssp ECC
T ss_pred ECC
Confidence 853
No 171
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.80 E-value=5.8e-06 Score=68.25 Aligned_cols=68 Identities=19% Similarity=0.146 Sum_probs=54.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCC--------CC-cE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVP--------KA-DT 254 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P--------~g-D~ 254 (269)
...+|||||||+|..+..+++++| +.+++.+|. |..++.+++. ++|+++.+|..+..| .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 457999999999999999999998 889999998 7777766542 679999999876322 33 99
Q ss_pred EEeccc
Q 024350 255 IFMKVI 260 (269)
Q Consensus 255 ~~l~~i 260 (269)
+++...
T Consensus 144 v~~~~~ 149 (225)
T 3tr6_A 144 IYIDAD 149 (225)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 886543
No 172
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.80 E-value=2.2e-05 Score=65.08 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCC------CCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCcCCC-
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYP------HIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFESVPK- 251 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P------~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~~P~- 251 (269)
.....+|+|||||+|.++..+++..+ ..+++.+|+ |..++.+++ .++|+++.+|..+++|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 34457999999999999999998766 368999996 777776654 25899999999886664
Q ss_pred C--cEEEeccccccCC
Q 024350 252 A--DTIFMKVICVCYL 265 (269)
Q Consensus 252 g--D~~~l~~iLhd~~ 265 (269)
+ |+++....+|..+
T Consensus 162 ~~fD~I~~~~~~~~~~ 177 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP 177 (227)
T ss_dssp CSEEEEEECSCBSSCC
T ss_pred CCccEEEECCchHHHH
Confidence 3 9999998887654
No 173
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.80 E-value=3e-05 Score=64.12 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCCccEEEEeCCC-chHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEeccc--CCcCCC-C-cEEEecc
Q 024350 191 FEHVKKLVDVGGG-LGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDL--FESVPK-A-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG-~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~--~~~~P~-g-D~~~l~~ 259 (269)
.+...+|+||||| +|.++..+++.. ..+++.+|+ |..++.++++ -+++++.+|+ +.+++. . |++++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3456899999999 999999999987 788999997 7778776542 3799999996 445664 3 9999876
Q ss_pred ccccCC
Q 024350 260 ICVCYL 265 (269)
Q Consensus 260 iLhd~~ 265 (269)
.+|..+
T Consensus 132 p~~~~~ 137 (230)
T 3evz_A 132 PYYDKP 137 (230)
T ss_dssp CCC---
T ss_pred CCcCCc
Confidence 555443
No 174
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.79 E-value=2.2e-05 Score=68.36 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=53.4
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE 247 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~ 247 (269)
..+++.+. .....++||+|||+|.++..+++++|+.+++.+|. |..++.+++. +|++++.+||.+
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 34555555 55567999999999999999999999999999997 7888766542 689999999865
No 175
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.79 E-value=6.9e-06 Score=67.99 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCc---CC-----CC-c
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFES---VP-----KA-D 253 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~---~P-----~g-D 253 (269)
.+..+|+|||||+|..+..+++..| +.+++.+|. |..++.+++ .++|+++.+|+++. ++ .. |
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3557999999999999999999988 789999998 777776654 26899999998763 21 33 9
Q ss_pred EEEecc
Q 024350 254 TIFMKV 259 (269)
Q Consensus 254 ~~~l~~ 259 (269)
++++..
T Consensus 148 ~v~~d~ 153 (229)
T 2avd_A 148 VAVVDA 153 (229)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888743
No 176
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=97.79 E-value=3.9e-05 Score=63.15 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=52.2
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHH----HHhCCCCCCceEEecccCCc-----CCCC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYV----IKNAPSYPGIDHVGGDLFES-----VPKA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~v----v~~a~~~~ri~~~~gD~~~~-----~P~g-D~~~l~ 258 (269)
.+...+|||||||+|.++..+++..|+.+++.+|+ |.. .+.++...+|+++.+|..++ .+.. |+++..
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 44567999999999999999999998778999997 443 34444456788898998763 2333 998875
No 177
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.77 E-value=2.7e-05 Score=65.28 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=53.5
Q ss_pred ccEEEEeCCCchHHHHHHHHH----CCCCeEEEeeh-hHHHHhCCC-CCCceEEecccCCc--CC---C-C-cEEEecc
Q 024350 194 VKKLVDVGGGLGATLNMIISK----YPHIKGINYDL-LYVIKNAPS-YPGIDHVGGDLFES--VP---K-A-DTIFMKV 259 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~----~P~l~~vv~Dl-p~vv~~a~~-~~ri~~~~gD~~~~--~P---~-g-D~~~l~~ 259 (269)
..+|||||||+|..+..+++. +|+.+++.+|+ |..++.++. .++|+++.+|..+. +| . . |++++..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 469999999999999999998 79999999997 677776654 37899999999873 22 2 3 8888654
No 178
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.77 E-value=2.9e-05 Score=66.63 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=57.5
Q ss_pred CccEEEEeCCCc--hHHHHHH-HHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcC-----C---CC-c
Q 024350 193 HVKKLVDVGGGL--GATLNMI-ISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESV-----P---KA-D 253 (269)
Q Consensus 193 ~~~~vvDvGGG~--G~~~~~l-~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~-----P---~g-D 253 (269)
+..+|||||||. +..+.++ .+.+|+.++|.+|. |.+++.+++. .+++++.+|+.++- | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 568999999997 3334444 45689999999997 9999888652 47999999998731 2 11 4
Q ss_pred -----EEEeccccccCCCC
Q 024350 254 -----TIFMKVICVCYLNS 267 (269)
Q Consensus 254 -----~~~l~~iLhd~~d~ 267 (269)
++++..+||..+|+
T Consensus 158 ~~~p~av~~~avLH~l~d~ 176 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDE 176 (277)
T ss_dssp TTSCCEEEEESCGGGSCGG
T ss_pred cCCcchHHhhhhHhcCCch
Confidence 68899999999885
No 179
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=97.77 E-value=5.1e-05 Score=62.71 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHH----hCCCCCCceEEecccCCc-----CCCC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIK----NAPSYPGIDHVGGDLFES-----VPKA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~----~a~~~~ri~~~~gD~~~~-----~P~g-D~~~l~ 258 (269)
+....+|+|+|||+|.++..++++. |+.+++.+|. |..++ .++..++++++.+|+.+. .+.. |++++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4456799999999999999999985 6788999997 54443 344458999999999872 2334 888854
No 180
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.77 E-value=3.5e-05 Score=66.96 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=57.0
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCC-cCCC-C-c
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFE-SVPK-A-D 253 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~-~~P~-g-D 253 (269)
..+++..+ .....+|+|||||+|.++..++++ ..+++.+|+ |..++.+++ .++++++.+|+.+ ++|. . |
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 34555555 556679999999999999999998 467899997 666665554 3799999999998 7775 3 8
Q ss_pred EEEec
Q 024350 254 TIFMK 258 (269)
Q Consensus 254 ~~~l~ 258 (269)
+++..
T Consensus 117 ~Iv~N 121 (295)
T 3gru_A 117 KVVAN 121 (295)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77643
No 181
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.76 E-value=4.5e-05 Score=62.94 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-----CCCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCcC----
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-----PHIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFESV---- 249 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~~---- 249 (269)
.....+|+|||||+|.++..+++.. |+.+++.+|. |..++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4455799999999999999999987 6789999997 777766653 258999999998754
Q ss_pred C--CC-cEEEeccccccC
Q 024350 250 P--KA-DTIFMKVICVCY 264 (269)
Q Consensus 250 P--~g-D~~~l~~iLhd~ 264 (269)
+ .. |++++...+|..
T Consensus 158 ~~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL 175 (227)
T ss_dssp HHHCCEEEEEECSBBSSC
T ss_pred ccCCCcCEEEECCchHHH
Confidence 3 23 999998888754
No 182
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.75 E-value=5.4e-05 Score=69.13 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=58.2
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhC-------CC--------CCCceEEecccC
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNA-------PS--------YPGIDHVGGDLF 246 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a-------~~--------~~ri~~~~gD~~ 246 (269)
.+++.+. +....+|||||||+|.++..+++.+|..+++++|+ |..++.| ++ .++|+++.+|-+
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 3455555 56678999999999999999999999889999997 5555554 32 268999887544
Q ss_pred -Cc--C---CC-CcEEEeccccc
Q 024350 247 -ES--V---PK-ADTIFMKVICV 262 (269)
Q Consensus 247 -~~--~---P~-gD~~~l~~iLh 262 (269)
.+ + .. .|++++.+.++
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l~ 334 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFLF 334 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTC
T ss_pred ccccccccccCCCCEEEEeCccc
Confidence 32 2 22 39999877764
No 183
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.75 E-value=1.1e-05 Score=68.40 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC-C-cEEEecccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK-A-DTIFMKVIC 261 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~-g-D~~~l~~iL 261 (269)
....+|+|||||+|.++..+++..+ +++++|+ |..++.++++ . +++..+|+.+.+|. . |+++.....
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYA 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcH
Confidence 3457999999999999999998766 8999997 7777766542 3 89999999876653 3 999875433
No 184
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.75 E-value=1.6e-05 Score=65.09 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=53.4
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCC--CC-cEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVP--KA-DTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P--~g-D~~~l~ 258 (269)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.+++. ++|+++.+|..+..| .+ |++++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence 457999999999999999999998 889999998 7777776642 589999999876333 33 777764
No 185
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.75 E-value=1.2e-05 Score=67.03 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=51.4
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC---cCCC-C-cEEEe-ccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE---SVPK-A-DTIFM-KVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~---~~P~-g-D~~~l-~~i 260 (269)
...+|||||||+|.++..+++..+. +++.+|+ |.+++.+++. .+++++.+|+.+ +++. . |++++ ...
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 4579999999999999999665443 7899997 7777766542 679999999876 3554 3 99988 444
No 186
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.74 E-value=5.3e-05 Score=66.72 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHH-CCCCeEEEeeh-hHHHHhCCC-----------------CCCceEEec
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPHIKGINYDL-LYVIKNAPS-----------------YPGIDHVGG 243 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~vv~Dl-p~vv~~a~~-----------------~~ri~~~~g 243 (269)
.++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.+++ .++|+++.+
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3455555 556689999999999999999998 58899999997 777766543 258999999
Q ss_pred ccCCc---CCC-C-cEEEec
Q 024350 244 DLFES---VPK-A-DTIFMK 258 (269)
Q Consensus 244 D~~~~---~P~-g-D~~~l~ 258 (269)
|+.+. ++. . |++++.
T Consensus 175 d~~~~~~~~~~~~fD~V~~~ 194 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALD 194 (336)
T ss_dssp CTTCCC-------EEEEEEC
T ss_pred ChHHcccccCCCCeeEEEEC
Confidence 99873 343 3 988873
No 187
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.74 E-value=4.6e-05 Score=61.92 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=57.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----C-CceEEecccCCcCCCC-cEEEeccccccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----P-GIDHVGGDLFESVPKA-DTIFMKVICVCYL 265 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~-ri~~~~gD~~~~~P~g-D~~~l~~iLhd~~ 265 (269)
...+|+|+|||+|.++..+++..+ -+++++|+ |..++.+++. . +++++.+|+.+ +|.. |++++.-.+|.+.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcccc
Confidence 457999999999999999998743 37899997 7777766542 2 79999999987 4544 9999988777765
Q ss_pred C
Q 024350 266 N 266 (269)
Q Consensus 266 d 266 (269)
.
T Consensus 127 ~ 127 (207)
T 1wy7_A 127 K 127 (207)
T ss_dssp T
T ss_pred C
Confidence 3
No 188
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.74 E-value=3.2e-05 Score=62.56 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred EEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCC-cCCC-C-cEEEec
Q 024350 196 KLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFE-SVPK-A-DTIFMK 258 (269)
Q Consensus 196 ~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~-~~P~-g-D~~~l~ 258 (269)
+|||||||+|.++..+++. +.+++++|. |..++.+++. .+++++.+|+.+ ++|. . |++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence 9999999999999999987 568999997 7777766643 389999999988 5664 3 999874
No 189
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.72 E-value=9.6e-06 Score=63.61 Aligned_cols=68 Identities=15% Similarity=0.021 Sum_probs=54.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----C-CceEEecccCCcCC------CC-cEEEecc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----P-GIDHVGGDLFESVP------KA-DTIFMKV 259 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~-ri~~~~gD~~~~~P------~g-D~~~l~~ 259 (269)
...+|+|+|||+|.++..++++.++ ++.+|+ |..++.+++. . +++++.+|+.+..| +. |++++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4578999999999999999999877 899998 7888776652 2 89999999987322 13 9999987
Q ss_pred ccc
Q 024350 260 ICV 262 (269)
Q Consensus 260 iLh 262 (269)
.+|
T Consensus 119 ~~~ 121 (171)
T 1ws6_A 119 PYA 121 (171)
T ss_dssp CTT
T ss_pred CCc
Confidence 776
No 190
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.72 E-value=0.00012 Score=58.78 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=54.9
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCC---------CeEEEeehhHHHHhCCCCCCceEE-ecccCCc-----
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPH---------IKGINYDLLYVIKNAPSYPGIDHV-GGDLFES----- 248 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~---------l~~vv~Dlp~vv~~a~~~~ri~~~-~gD~~~~----- 248 (269)
+.+.+..+....+|||||||+|.++..+++++|. .+++++|+.+. ...++++++ .+|+.+.
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 3444542455689999999999999999999875 78999998652 124679999 9998762
Q ss_pred ----CCC-C-cEEEecccc
Q 024350 249 ----VPK-A-DTIFMKVIC 261 (269)
Q Consensus 249 ----~P~-g-D~~~l~~iL 261 (269)
.+. . |+++....+
T Consensus 89 ~~~~~~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAP 107 (196)
T ss_dssp HHHHSGGGCEEEEEECCCC
T ss_pred HHHhcCCCCCcEEEeCCCC
Confidence 232 4 999875433
No 191
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.71 E-value=2.3e-05 Score=62.99 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=55.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCc---CC-CC-cEEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFES---VP-KA-DTIFMKVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~---~P-~g-D~~~l~~i 260 (269)
...+|+|+|||+|.++..++++ +..+++.+|+ |..++.++++ ++++++.+|+.+. .+ .. |++++.-.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4478999999999999988774 6668999997 7888777652 6899999999872 33 33 99998766
Q ss_pred ccc
Q 024350 261 CVC 263 (269)
Q Consensus 261 Lhd 263 (269)
+|.
T Consensus 123 ~~~ 125 (189)
T 3p9n_A 123 YNV 125 (189)
T ss_dssp TTS
T ss_pred CCc
Confidence 654
No 192
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.71 E-value=1.9e-05 Score=68.85 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=55.4
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCc--CC-CC-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFES--VP-KA-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~--~P-~g-D~~~ 256 (269)
.+..+|||||||+|..+.+++++.|..+++.+|+ |.+++.+++ .+|++++.+|.++. .+ .. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999988899999998 788776653 37899999998762 23 34 9998
Q ss_pred ecc
Q 024350 257 MKV 259 (269)
Q Consensus 257 l~~ 259 (269)
+..
T Consensus 174 ~d~ 176 (304)
T 2o07_A 174 TDS 176 (304)
T ss_dssp EEC
T ss_pred ECC
Confidence 743
No 193
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.71 E-value=2.9e-05 Score=66.71 Aligned_cols=66 Identities=20% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCC-C-cEEEec
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPK-A-DTIFMK 258 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~-g-D~~~l~ 258 (269)
+...+|+|+|||+|.++..+++..+. +++.+|+ |..++.++++ ++++++.+|+++..+. . |++++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence 34579999999999999999999887 8999997 7778766542 5799999999984443 3 988874
No 194
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.70 E-value=2.5e-05 Score=69.08 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCc---CCC-C-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFES---VPK-A-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~---~P~-g-D~~ 255 (269)
++..+|||||||+|..++.+++..|..+++++|+ |.+++.+++ .+||+++.+|.++. .+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888899999998 788876653 26899999998762 343 3 999
Q ss_pred Eec
Q 024350 256 FMK 258 (269)
Q Consensus 256 ~l~ 258 (269)
++.
T Consensus 199 i~d 201 (334)
T 1xj5_A 199 IVD 201 (334)
T ss_dssp EEC
T ss_pred EEC
Confidence 874
No 195
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.69 E-value=4e-05 Score=65.73 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC---CCCceEEecccCC-cCCC--CcEE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS---YPGIDHVGGDLFE-SVPK--ADTI 255 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~---~~ri~~~~gD~~~-~~P~--gD~~ 255 (269)
.+++..+ .... +|+|||||+|.++..++++. .+++.+|+ +..++.+++ .++++++.+|+++ ++++ ....
T Consensus 38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 38 RIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp HHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEE
T ss_pred HHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccE
Confidence 4555555 5555 99999999999999999986 56788887 566655543 3689999999998 6663 2334
Q ss_pred Eecccccc
Q 024350 256 FMKVICVC 263 (269)
Q Consensus 256 ~l~~iLhd 263 (269)
+++|.-++
T Consensus 114 iv~NlPy~ 121 (271)
T 3fut_A 114 LVANLPYH 121 (271)
T ss_dssp EEEEECSS
T ss_pred EEecCccc
Confidence 55555433
No 196
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.69 E-value=3.9e-05 Score=63.69 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=52.7
Q ss_pred cEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCC-------C-CCceEEecccCCc---CCC-C-cEEEecc
Q 024350 195 KKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPS-------Y-PGIDHVGGDLFES---VPK-A-DTIFMKV 259 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~-------~-~ri~~~~gD~~~~---~P~-g-D~~~l~~ 259 (269)
.+|||||||+|..+..++++.| +.+++.+|+ |..++.+++ . +||+++.+|..+. ++. . |++++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999986 889999997 677766653 2 5899999998762 323 3 9998754
Q ss_pred c
Q 024350 260 I 260 (269)
Q Consensus 260 i 260 (269)
.
T Consensus 138 ~ 138 (221)
T 3dr5_A 138 S 138 (221)
T ss_dssp C
T ss_pred c
Confidence 3
No 197
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.69 E-value=6.7e-05 Score=64.02 Aligned_cols=64 Identities=16% Similarity=0.055 Sum_probs=53.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----------CCceEEecccCCcCCCC-cEEEec
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----------PGIDHVGGDLFESVPKA-DTIFMK 258 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----------~ri~~~~gD~~~~~P~g-D~~~l~ 258 (269)
++..+|+|||||+|..+.++++. + .+++++|+ |.+++.+++. +|++++.+|.++-. .. |++++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC
Confidence 35689999999999999999988 8 89999998 8888888752 58999999988743 43 988864
No 198
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.68 E-value=2.5e-05 Score=70.03 Aligned_cols=68 Identities=16% Similarity=0.012 Sum_probs=56.6
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCCC-C-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPK-A-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~-g-D~~~l~ 258 (269)
|....+|+|+|||+|.+++++++..+..+++++|+ |.+++.++++ ++|+++.+|+.+ +.|. . |+++..
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 45567999999999999999999998778999997 7888777642 589999999998 5553 3 988874
No 199
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.68 E-value=3.3e-05 Score=66.19 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=56.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCc-CCCC-cEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFES-VPKA-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~-~P~g-D~~~l~~ 259 (269)
+.+..+|+|+|||+|.++..++++.+..+++.+|+ |..++.++++ ++++++.+|+++. .+.. |++++..
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECC
Confidence 44567999999999999999999999889999998 8888777642 6789999999885 2223 9887754
No 200
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.68 E-value=2e-05 Score=69.04 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=56.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCc--CC-CC-cEEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFES--VP-KA-DTIF 256 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~--~P-~g-D~~~ 256 (269)
+..+|||||||.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+ .. |+++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 558999999999999999999888889999998 777776542 36899999999773 23 34 9999
Q ss_pred ecccccc
Q 024350 257 MKVICVC 263 (269)
Q Consensus 257 l~~iLhd 263 (269)
+....|.
T Consensus 157 ~d~~~~~ 163 (314)
T 1uir_A 157 IDLTDPV 163 (314)
T ss_dssp EECCCCB
T ss_pred ECCCCcc
Confidence 8755543
No 201
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.68 E-value=1.2e-05 Score=67.23 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=46.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE 247 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~ 247 (269)
+..+|||||||+|..+..+++.+| ..+++.+|. |..++.+++. ++|+++.+|+.+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 457999999999999999999998 789999997 7777766542 569999999876
No 202
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.67 E-value=2.4e-05 Score=67.94 Aligned_cols=66 Identities=29% Similarity=0.321 Sum_probs=53.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCcC--C-CC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFESV--P-KA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~~--P-~g-D~~~l 257 (269)
+..+|+|||||+|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|.++.+ + .. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999888899999998 777776543 368999999987632 2 34 99886
Q ss_pred c
Q 024350 258 K 258 (269)
Q Consensus 258 ~ 258 (269)
.
T Consensus 170 d 170 (296)
T 1inl_A 170 D 170 (296)
T ss_dssp E
T ss_pred c
Confidence 3
No 203
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.66 E-value=2.9e-05 Score=63.31 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=53.0
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC--cCCC-C-cEEEeccccc
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE--SVPK-A-DTIFMKVICV 262 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~--~~P~-g-D~~~l~~iLh 262 (269)
..+|||+|||+|.++..++++.. -+++.+|+ |..++.++++ ++|+++.+|+.+ +.+. . |++++...+|
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 36899999999999999888754 37899997 7888776642 589999999877 3333 3 9998876544
No 204
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.66 E-value=9.6e-05 Score=61.63 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcC-CC-C
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESV-PK-A 252 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~-P~-g 252 (269)
.++...+ .....+|+|||||+|.++..++++ ..+++++|. |..++.+++. ++++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 3445555 556679999999999999999999 778999996 7777766541 68999999999865 53 4
Q ss_pred -cEEEe
Q 024350 253 -DTIFM 257 (269)
Q Consensus 253 -D~~~l 257 (269)
|++++
T Consensus 159 ~D~v~~ 164 (248)
T 2yvl_A 159 FHAAFV 164 (248)
T ss_dssp BSEEEE
T ss_pred ccEEEE
Confidence 99886
No 205
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.65 E-value=2e-05 Score=69.25 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=54.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCcC---CCC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFESV---PKA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~~---P~g-D~~~l 257 (269)
+..+|+|||||+|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|.++.+ +.. |++++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999999888899999998 788876542 368999999987632 334 99987
Q ss_pred c
Q 024350 258 K 258 (269)
Q Consensus 258 ~ 258 (269)
.
T Consensus 196 d 196 (321)
T 2pt6_A 196 D 196 (321)
T ss_dssp E
T ss_pred C
Confidence 4
No 206
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.65 E-value=1.8e-05 Score=68.28 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=53.1
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCC--CeEEEeeh-hHHHHhCCCC--CCceEEecccCC-cCC
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPH--IKGINYDL-LYVIKNAPSY--PGIDHVGGDLFE-SVP 250 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~-~~P 250 (269)
.+++..+ .....+|+|||||+|.++..++++.+. .+++++|+ |..++.+++. ++++++.+|+++ +++
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 3555555 556679999999999999999998765 56899997 6777766553 789999999988 554
No 207
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.64 E-value=1.7e-05 Score=67.06 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=54.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---C------CCC-c
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---V------PKA-D 253 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~------P~g-D 253 (269)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.+++. ++|+++.+|..+. + +.. |
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 457999999999999999999998 789999998 7777766542 6899999998762 2 233 9
Q ss_pred EEEecc
Q 024350 254 TIFMKV 259 (269)
Q Consensus 254 ~~~l~~ 259 (269)
++++..
T Consensus 159 ~V~~d~ 164 (247)
T 1sui_A 159 FIFVDA 164 (247)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 998754
No 208
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.63 E-value=3.9e-05 Score=64.56 Aligned_cols=75 Identities=8% Similarity=0.204 Sum_probs=57.1
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----CCceEEecccCC-cCCC-CcE
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----PGIDHVGGDLFE-SVPK-ADT 254 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~ri~~~~gD~~~-~~P~-gD~ 254 (269)
..+++.++ .....+|+|||||+|.++..++++. .+++++|+ |..++.+++. ++++++.+|+.+ +++. +..
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 34556665 5566899999999999999999985 78899997 6777777653 689999999988 5663 344
Q ss_pred EEecc
Q 024350 255 IFMKV 259 (269)
Q Consensus 255 ~~l~~ 259 (269)
.++.+
T Consensus 96 ~vv~n 100 (245)
T 1yub_A 96 KIVGN 100 (245)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
No 209
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.62 E-value=7.7e-05 Score=61.47 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=58.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCcCC-C-C-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFESVP-K-A-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~~P-~-g-D~~ 255 (269)
....+|+|||||+|..+..+++.. |+.+++.+|+ |..++.+++ .++|+++.+|.....+ . . |++
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 345799999999999999999985 7789999997 777776643 2489999999986433 3 3 999
Q ss_pred EeccccccCC
Q 024350 256 FMKVICVCYL 265 (269)
Q Consensus 256 ~l~~iLhd~~ 265 (269)
++...++...
T Consensus 156 ~~~~~~~~~~ 165 (226)
T 1i1n_A 156 HVGAAAPVVP 165 (226)
T ss_dssp EECSBBSSCC
T ss_pred EECCchHHHH
Confidence 9888776543
No 210
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.62 E-value=1e-05 Score=68.23 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=53.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCcC--------CCC-cE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFESV--------PKA-DT 254 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~~--------P~g-D~ 254 (269)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.+++ .++|+++.+|..+.. +.. |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 457999999999999999999997 889999997 666655543 268999999997632 233 99
Q ss_pred EEeccc
Q 024350 255 IFMKVI 260 (269)
Q Consensus 255 ~~l~~i 260 (269)
+++...
T Consensus 140 V~~d~~ 145 (242)
T 3r3h_A 140 IFIDAD 145 (242)
T ss_dssp EEEESC
T ss_pred EEEcCC
Confidence 987543
No 211
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.62 E-value=8.3e-05 Score=63.91 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=53.1
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh--hHHHHhCCC---------C-------CCceEEecccCC---cC--
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL--LYVIKNAPS---------Y-------PGIDHVGGDLFE---SV-- 249 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl--p~vv~~a~~---------~-------~ri~~~~gD~~~---~~-- 249 (269)
...+|+|||||+|.++..+++. ...+++.+|+ |.+++.+++ . ++|+++..|.-+ .+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 4579999999999999988876 3448999998 677765432 1 378888655443 22
Q ss_pred --C-CC-cEEEeccccccCCC
Q 024350 250 --P-KA-DTIFMKVICVCYLN 266 (269)
Q Consensus 250 --P-~g-D~~~l~~iLhd~~d 266 (269)
+ .. |++++..++|+.++
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~ 178 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA 178 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG
T ss_pred hccCCCCCEEEEeCcccChHH
Confidence 2 33 99999999987643
No 212
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.61 E-value=4.4e-05 Score=66.35 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=51.5
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-cCCCCcE
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-SVPKADT 254 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~~P~gD~ 254 (269)
.+++..+ .....+|+|||||+|.++..++++ ..+++++|+ |..++.+++ .++++++.+|+.+ +.++-|+
T Consensus 33 ~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~ 109 (299)
T 2h1r_A 33 KIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDV 109 (299)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSE
T ss_pred HHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCE
Confidence 4455555 556679999999999999999987 457899997 677766543 2689999999987 4444488
Q ss_pred EEe
Q 024350 255 IFM 257 (269)
Q Consensus 255 ~~l 257 (269)
++.
T Consensus 110 Vv~ 112 (299)
T 2h1r_A 110 CTA 112 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 213
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.61 E-value=9.8e-05 Score=66.75 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=55.4
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCCCCCceEEecccCCcCCC-C-cEEEec
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFESVPK-A-DTIFMK 258 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~~~P~-g-D~~~l~ 258 (269)
+++.++ .....+|+|+|||+|.++..+++++ +..+++++|+ |..++.+ ++++++.+|+++..+. . |+++..
T Consensus 31 ~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 31 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 344444 3344699999999999999999988 7789999998 5666555 7899999999985443 4 999873
No 214
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.60 E-value=2.8e-05 Score=68.20 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=54.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCcC--C-CC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFESV--P-KA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~~--P-~g-D~~~l 257 (269)
+..+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .+||+++.+|.++.+ + .. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 558999999999999999999888899999998 778776542 368999999987732 3 34 99987
Q ss_pred cc
Q 024350 258 KV 259 (269)
Q Consensus 258 ~~ 259 (269)
..
T Consensus 188 d~ 189 (314)
T 2b2c_A 188 DS 189 (314)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 215
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.59 E-value=3.6e-05 Score=66.41 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----------CCCceEEecccCCc---CCCC-cEEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----------YPGIDHVGGDLFES---VPKA-DTIF 256 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----------~~ri~~~~gD~~~~---~P~g-D~~~ 256 (269)
++..+|+|||||.|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|..+. .+.. |+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888899999998 778776543 36899999998763 2334 9998
Q ss_pred ecc
Q 024350 257 MKV 259 (269)
Q Consensus 257 l~~ 259 (269)
+..
T Consensus 157 ~d~ 159 (283)
T 2i7c_A 157 VDS 159 (283)
T ss_dssp EEC
T ss_pred EcC
Confidence 743
No 216
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.59 E-value=2.3e-05 Score=65.66 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---C------CCC-
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---V------PKA- 252 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~------P~g- 252 (269)
.+..+|||||||+|..+..++++.| +.+++.+|+ |..++.+++. +||+++.+|..+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999998 789999998 7777766542 5899999998762 2 233
Q ss_pred cEEEec
Q 024350 253 DTIFMK 258 (269)
Q Consensus 253 D~~~l~ 258 (269)
|++++.
T Consensus 149 D~I~~d 154 (237)
T 3c3y_A 149 DFGFVD 154 (237)
T ss_dssp EEEEEC
T ss_pred CEEEEC
Confidence 999875
No 217
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=97.58 E-value=6.1e-05 Score=65.56 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=52.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----C--------CceEEecccCC---------cCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----P--------GIDHVGGDLFE---------SVP 250 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~--------ri~~~~gD~~~---------~~P 250 (269)
...+|||||||+|..+..+++. ...+++++|+ +.+++.|++. . ++++...|+.. +.|
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3579999999999877766654 3457999997 7888877652 1 25677777721 245
Q ss_pred C-C-cEEEecccccc-CCC
Q 024350 251 K-A-DTIFMKVICVC-YLN 266 (269)
Q Consensus 251 ~-g-D~~~l~~iLhd-~~d 266 (269)
. . |++++..+||. |++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~ 145 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHP 145 (302)
T ss_dssp SSCEEEEEEESCGGGTCST
T ss_pred CCCeeEEEECchHHHhCCH
Confidence 3 3 99999999997 443
No 218
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.58 E-value=3.7e-05 Score=66.18 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=53.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCC----------------CCCCceEEecccCCcC--CCC-
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAP----------------SYPGIDHVGGDLFESV--PKA- 252 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~----------------~~~ri~~~~gD~~~~~--P~g- 252 (269)
+..+|+|||||+|..+.++++. |..+++++|+ |.+++.++ ..+|++++.+|..+.+ +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4579999999999999999998 8889999998 77776543 2478999999986522 434
Q ss_pred cEEEeccc
Q 024350 253 DTIFMKVI 260 (269)
Q Consensus 253 D~~~l~~i 260 (269)
|++++...
T Consensus 154 D~Ii~d~~ 161 (281)
T 1mjf_A 154 DVIIADST 161 (281)
T ss_dssp EEEEEECC
T ss_pred eEEEECCC
Confidence 99987544
No 219
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.58 E-value=3.5e-05 Score=62.77 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=52.3
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------CCceEEecccCCcC----C-C-CcEEEec
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--------PGIDHVGGDLFESV----P-K-ADTIFMK 258 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--------~ri~~~~gD~~~~~----P-~-gD~~~l~ 258 (269)
..+|||+|||+|.++..++++.+ .+++.+|+ |.+++.++++ ++++++.+|+.+.. + + -|++++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 36899999999999999887754 57899997 7788776542 58999999987622 1 3 4888887
Q ss_pred cccc
Q 024350 259 VICV 262 (269)
Q Consensus 259 ~iLh 262 (269)
..+|
T Consensus 133 ~~~~ 136 (201)
T 2ift_A 133 PPFH 136 (201)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6644
No 220
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.56 E-value=9.1e-05 Score=66.89 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=58.2
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPH--------------------------------------IKGINY 223 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~vv~ 223 (269)
..++.... |.....|+|.+||+|+++++.+....+ .+++.+
T Consensus 191 a~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 191 AALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 34555555 777789999999999999998876544 568999
Q ss_pred eh-hHHHHhCCCC-------CCceEEecccCC-cCCCC-cEEEec
Q 024350 224 DL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA-DTIFMK 258 (269)
Q Consensus 224 Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g-D~~~l~ 258 (269)
|+ |.+++.|+.+ ++|+++.+|+++ +.+.. |++++.
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN 314 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence 97 7888776642 579999999998 44444 888764
No 221
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.55 E-value=4.6e-05 Score=64.81 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.5
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC----CCCceEEecccCC-cCC
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS----YPGIDHVGGDLFE-SVP 250 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~----~~ri~~~~gD~~~-~~P 250 (269)
.+++..+ .....+|+|||||+|.++..++++. .+++.+|+ |..++.+++ .++++++.+|+.+ +++
T Consensus 20 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 20 KIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 4555555 5566799999999999999999985 57899997 667766543 3789999999998 554
No 222
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.53 E-value=1.6e-05 Score=75.35 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=58.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC---cCCC-C-cEEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE---SVPK-A-DTIFMKVI 260 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~---~~P~-g-D~~~l~~i 260 (269)
...+|||||||.|.++..+++. +.+++++|. +..|+.|+.+ -.|++..++..+ +.+. . |+|+...+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4579999999999999999987 678999997 7888776542 258999988754 3343 3 99999999
Q ss_pred cccCCCC
Q 024350 261 CVCYLNS 267 (269)
Q Consensus 261 Lhd~~d~ 267 (269)
||..+|+
T Consensus 144 ~ehv~~~ 150 (569)
T 4azs_A 144 FHHIVHL 150 (569)
T ss_dssp HHHHHHH
T ss_pred hhcCCCH
Confidence 9987654
No 223
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.52 E-value=8e-05 Score=67.09 Aligned_cols=75 Identities=20% Similarity=0.092 Sum_probs=57.7
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPH--------------------------------------IKGINY 223 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~vv~ 223 (269)
..++.... |....+|+|++||+|.++++.+....+ .+++++
T Consensus 185 a~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 185 AGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 34455555 777789999999999999998876432 578999
Q ss_pred eh-hHHHHhCCCC-------CCceEEecccCC-cCCCC-cEEEe
Q 024350 224 DL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA-DTIFM 257 (269)
Q Consensus 224 Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g-D~~~l 257 (269)
|+ |.+++.|+.+ ++|++..+|+++ +.|.. |+++.
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~ 307 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT 307 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence 97 8888877653 479999999998 44444 88876
No 224
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.51 E-value=0.00013 Score=59.03 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=48.5
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCceEEecccCCc
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFES 248 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~~ 248 (269)
...+.+.|..++...+|||||||+|.++..++++ ..+++.+|+-+. ...++|+++.+|+.+.
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCH
Confidence 3455666663456689999999999999999988 778899998542 2347899999999873
No 225
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.51 E-value=0.00017 Score=53.29 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=54.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhC--CCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcCC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQI--PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRNN 111 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~--~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~~ 111 (269)
.+..|++.|.+. +++|+.+||+.+ +++ .. .+++-|+.|...|+|+. .+.+.|++|+.++.+....
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~giS------~~-aVs~rL~~Le~~GLV~~---~~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRIS------KS-SVSRRLKKLADHDLLQP---LANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCSC------HH-HHHHHHHHHHHTTSEEE---CSTTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEe---cCCceEEECchHHHHHHHH
Confidence 346688899876 599999999999 998 66 99999999999999994 3456999999999776554
No 226
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.49 E-value=2.4e-05 Score=65.93 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=55.1
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----C------------------------------
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----P------------------------------ 236 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~------------------------------ 236 (269)
....+|||||||+|.++..+++..+ .+++++|. |..++.+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3457999999999999999988876 57899997 6777665431 1
Q ss_pred -Cc-eEEecccCCcC--CC---C--cEEEecccccc
Q 024350 237 -GI-DHVGGDLFESV--PK---A--DTIFMKVICVC 263 (269)
Q Consensus 237 -ri-~~~~gD~~~~~--P~---g--D~~~l~~iLhd 263 (269)
+| +++.+|+.+.. +. + |++++..+||.
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~ 169 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA 169 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh
Confidence 27 99999998732 33 3 99999999993
No 227
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.48 E-value=3.2e-05 Score=64.51 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCc---CC-----CC-cE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFES---VP-----KA-DT 254 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~---~P-----~g-D~ 254 (269)
+..+|||||||+|..+..+++..| +.+++.+|. |..++.+++. ++|+++.+|..+. +| .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999998 789999997 7777766542 5899999997652 22 33 99
Q ss_pred EEeccc
Q 024350 255 IFMKVI 260 (269)
Q Consensus 255 ~~l~~i 260 (269)
+++...
T Consensus 152 V~~d~~ 157 (232)
T 3cbg_A 152 IFIDAD 157 (232)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 887644
No 228
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.48 E-value=0.0001 Score=49.25 Aligned_cols=55 Identities=15% Similarity=0.365 Sum_probs=45.9
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
+..|++.|...+ .++|..|||+.+|++ .. .+.++|..|...|++.. ...+.|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgls------r~-tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQVP------KK-TLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 556888998754 589999999999997 67 99999999999999873 345888864
No 229
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.47 E-value=0.0001 Score=66.26 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=56.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCc-CC-CC-cEEEecccccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFES-VP-KA-DTIFMKVICVC 263 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~-~P-~g-D~~~l~~iLhd 263 (269)
...+|+|||||+|.++..++++ +.+++.+|. |..++.++++ -+++++.+|+++. .+ .. |++++.-.+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 3469999999999999999998 568999997 7778776652 3599999999984 33 24 99999888875
No 230
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.46 E-value=8.8e-05 Score=66.55 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=48.0
Q ss_pred cEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC-------CCCceEEecccCC-cCCCC-cEEEe
Q 024350 195 KKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS-------YPGIDHVGGDLFE-SVPKA-DTIFM 257 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~-------~~ri~~~~gD~~~-~~P~g-D~~~l 257 (269)
++|||||||+|.+++..+++ -.-+++.+|..++++.|++ .++|+++.+|+.+ ++|+- |+++-
T Consensus 85 k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs 155 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 155 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred CEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence 68999999999988766655 3347899997666655543 2899999999988 78854 98864
No 231
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.46 E-value=0.00015 Score=65.33 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=58.0
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCC--------------------------------------CeEEEe
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPH--------------------------------------IKGINY 223 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~vv~ 223 (269)
..++.... |.....++|.+||+|+++++.+....+ .+++++
T Consensus 184 aall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 184 AAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 34555555 777789999999999999998875544 568999
Q ss_pred eh-hHHHHhCCCC-------CCceEEecccCC-cCCCC-cEEEec
Q 024350 224 DL-LYVIKNAPSY-------PGIDHVGGDLFE-SVPKA-DTIFMK 258 (269)
Q Consensus 224 Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P~g-D~~~l~ 258 (269)
|+ |.+++.++.+ ++|+++.+|+++ +.|.. |++++.
T Consensus 263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN 307 (384)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence 97 7888776642 579999999998 44444 888764
No 232
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.38 E-value=0.00023 Score=65.02 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCC-----C
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVP-----K 251 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P-----~ 251 (269)
+++.++ ..+..+|+|+|||+|.++..+++. ..+++.+|. |..++.|+.+ ++++++.+|+++.++ .
T Consensus 278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhc
Confidence 344444 445679999999999999999988 678899997 7888776542 589999999988432 2
Q ss_pred -C-cEEEe
Q 024350 252 -A-DTIFM 257 (269)
Q Consensus 252 -g-D~~~l 257 (269)
. |++++
T Consensus 355 ~~fD~Vv~ 362 (433)
T 1uwv_A 355 NGFDKVLL 362 (433)
T ss_dssp TCCSEEEE
T ss_pred CCCCEEEE
Confidence 3 88875
No 233
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.38 E-value=0.00021 Score=51.10 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=51.2
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
.++..-.++.|+..| . +++|+.|||+.+|++ .. .+.+.|+.|...|++.. .. +.|++|+.++
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~is------~~-tv~~~L~~L~~~Glv~~---~~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSLS------KK-QLDYHLKVLEAGFCIER---VG-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---ET-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---EC-CEEEECCCch
Confidence 344455667788888 5 589999999999998 67 99999999999999994 34 6999998765
No 234
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.36 E-value=0.00033 Score=59.79 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC--C------CceEE--ecccCCcCCCC-cEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY--P------GIDHV--GGDLFESVPKA-DTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~--~------ri~~~--~gD~~~~~P~g-D~~~l~~ 259 (269)
+....+|||||||+|.++..++++ -+++.+|+-+++..+++. . +|+++ .+|+.+--+.. |+++...
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 445689999999999999999887 578999985553333221 2 68999 89998721333 9998764
Q ss_pred c
Q 024350 260 I 260 (269)
Q Consensus 260 i 260 (269)
.
T Consensus 149 ~ 149 (265)
T 2oxt_A 149 G 149 (265)
T ss_dssp C
T ss_pred c
Confidence 4
No 235
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.36 E-value=0.00014 Score=61.59 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=49.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC----CCceEEecccCC-cCC
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY----PGIDHVGGDLFE-SVP 250 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~----~ri~~~~gD~~~-~~P 250 (269)
..+++..+ .....+|+|||||+|.++. + ++.+..+++.+|+ |..++.+++. ++++++.+|+.+ +++
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 34555555 5556789999999999999 5 4555555899997 7777776653 589999999988 544
No 236
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.34 E-value=0.00022 Score=62.29 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=55.1
Q ss_pred HhccCCCCccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCCC------CCceEEecccCC-cC-CCC-cE
Q 024350 186 ESYKGFEHVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-SV-PKA-DT 254 (269)
Q Consensus 186 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~~-P~g-D~ 254 (269)
..++ .....+|+|+|||+|..+..+++..+ ..+++.+|+ |..++.++++ ++|+++.+|+.+ +. +.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 4444 55567999999999999999999976 478999997 6767666542 579999999987 32 333 99
Q ss_pred EEe
Q 024350 255 IFM 257 (269)
Q Consensus 255 ~~l 257 (269)
+++
T Consensus 191 Il~ 193 (315)
T 1ixk_A 191 ILL 193 (315)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 237
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.32 E-value=0.00027 Score=61.16 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=54.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-----------CCCceEEecccCCcC--C-CC-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-----------YPGIDHVGGDLFESV--P-KA-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-----------~~ri~~~~gD~~~~~--P-~g-D~~ 255 (269)
+++++|+=||||.|..++++++..|--+.+++|+ |.|++.+++ .+|++++.+|-++-+ . +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998877788999998 888876653 389999999999833 2 23 888
Q ss_pred Ee
Q 024350 256 FM 257 (269)
Q Consensus 256 ~l 257 (269)
++
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 238
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.31 E-value=0.00033 Score=60.18 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=48.9
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCC--C------CceEE--ecccCCcCC-CC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSY--P------GIDHV--GGDLFESVP-KA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~--~------ri~~~--~gD~~~~~P-~g-D~~~l~ 258 (269)
+....+|||||||+|.++..++++ -+++.+|+-+++..+++. . +|+++ .+|+.+ +| .. |+++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvsd 155 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLCD 155 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEEC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEEC
Confidence 445689999999999999999987 578999985553333221 2 68999 899876 34 33 999876
Q ss_pred cc
Q 024350 259 VI 260 (269)
Q Consensus 259 ~i 260 (269)
..
T Consensus 156 ~~ 157 (276)
T 2wa2_A 156 IG 157 (276)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 239
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.28 E-value=0.00019 Score=63.48 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCC-----CeEEEeeh-hHHHHhCCCC-----CCceEEecccCCcCC-CC-cEEEecc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPH-----IKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFESVP-KA-DTIFMKV 259 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~-----l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~~P-~g-D~~~l~~ 259 (269)
...+|+|+|||+|.++..+++..|. .+++++|+ |..++.++.. -+++++.+|.+++.+ .. |+++..-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998875 67899997 7777766542 368999999998655 34 9988876
Q ss_pred ccccCC
Q 024350 260 ICVCYL 265 (269)
Q Consensus 260 iLhd~~ 265 (269)
-++.|+
T Consensus 210 Pfg~~~ 215 (344)
T 2f8l_A 210 PVGYYP 215 (344)
T ss_dssp CCSEES
T ss_pred CCCCcC
Confidence 665554
No 240
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.23 E-value=0.00012 Score=65.97 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=50.8
Q ss_pred CccEEEEeCCC------chHHHHHHHHH-CCCCeEEEeehhHHHHhCCCCCCceEEecccCC-cCC-------CC-cEEE
Q 024350 193 HVKKLVDVGGG------LGATLNMIISK-YPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFE-SVP-------KA-DTIF 256 (269)
Q Consensus 193 ~~~~vvDvGGG------~G~~~~~l~~~-~P~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~-~~P-------~g-D~~~ 256 (269)
+..+||||||| +|..+..++++ +|+.+++.+|+-+.. ....++|+++.+|+.+ +++ .. |+|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m--~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS--HVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG--GGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH--hhcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 45799999999 56666666665 699999999983332 1245899999999987 444 23 9997
Q ss_pred eccccccCC
Q 024350 257 MKVICVCYL 265 (269)
Q Consensus 257 l~~iLhd~~ 265 (269)
.. ..|.|+
T Consensus 294 sd-gsH~~~ 301 (419)
T 3sso_A 294 DD-GSHINA 301 (419)
T ss_dssp EC-SCCCHH
T ss_pred EC-Ccccch
Confidence 64 456554
No 241
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=97.18 E-value=6.9e-05 Score=64.33 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------------C---------------------
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--------------P--------------------- 236 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--------------~--------------------- 236 (269)
...+|||||||+|. ...++...+..+++++|+ |.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTV-YQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCC-GGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcCh-HHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 45799999999999 444454555668999997 7777655431 0
Q ss_pred -CceEEecccCCc-------CCC-C-cEEEeccccccCC
Q 024350 237 -GIDHVGGDLFES-------VPK-A-DTIFMKVICVCYL 265 (269)
Q Consensus 237 -ri~~~~gD~~~~-------~P~-g-D~~~l~~iLhd~~ 265 (269)
.++++.+|+.+. +|. . |+++...+||..+
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~ 188 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS 188 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc
Confidence 134556688762 233 2 9999999998743
No 242
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.17 E-value=0.00078 Score=46.72 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=50.3
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhh
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYF 107 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l 107 (269)
.-.+..|++.|...+++.++|+.+||+++|++ .. .+.+.|.-|...|+|...+ ..++.|...+....+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs------r~-tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 34466688889887544589999999999998 57 8999999999999998542 235889887765433
No 243
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.11 E-value=0.00037 Score=59.93 Aligned_cols=66 Identities=21% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC-------CCCceEEecccCCcCCC--CcEEEec
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS-------YPGIDHVGGDLFESVPK--ADTIFMK 258 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~-------~~ri~~~~gD~~~~~P~--gD~~~l~ 258 (269)
....+|+|+|||+|.++..++++ +..+++.+|+ |..++.+++ .++|+++.+|.++-.++ .|.++|.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence 35689999999999999999876 5578999998 777776654 27899999999874444 3887764
No 244
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.00087 Score=61.49 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=55.4
Q ss_pred HHhccCCCCccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCC------CCCceEEecccCC-c--CC-CC
Q 024350 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-S--VP-KA 252 (269)
Q Consensus 185 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~--~P-~g 252 (269)
...++ .....+|+|+|||+|..+..+++..++ .+++.+|+ |..++.+++ .++|+++.+|+.+ + ++ ..
T Consensus 252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 34444 455679999999999999999999987 78999997 566655543 2579999999987 3 44 33
Q ss_pred -cEEEe
Q 024350 253 -DTIFM 257 (269)
Q Consensus 253 -D~~~l 257 (269)
|++++
T Consensus 331 fD~Vl~ 336 (450)
T 2yxl_A 331 ADKVLL 336 (450)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 99986
No 245
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.08 E-value=0.00054 Score=59.67 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-----hHHHHhCCC--C--CCceEEec-ccCCcCCC-CcEEEecc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-----LYVIKNAPS--Y--PGIDHVGG-DLFESVPK-ADTIFMKV 259 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-----p~vv~~a~~--~--~ri~~~~g-D~~~~~P~-gD~~~l~~ 259 (269)
++...+|||||||+|.++..++++ -+++.+|+ +..++..+. . ++|+++.+ |+++.-+. .|+++...
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 445579999999999999999988 36788887 543332221 2 67999999 99873233 49998754
Q ss_pred cc
Q 024350 260 IC 261 (269)
Q Consensus 260 iL 261 (269)
.+
T Consensus 157 ~~ 158 (305)
T 2p41_A 157 GE 158 (305)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 246
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.00029 Score=59.92 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-h-------HHHHhCCCC-------CCceEEecccCCc---CC--
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-L-------YVIKNAPSY-------PGIDHVGGDLFES---VP-- 250 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p-------~vv~~a~~~-------~ri~~~~gD~~~~---~P-- 250 (269)
.....+|||+|||+|.++..+++. ..+++.+|+ | ..++.++.+ .||+++.+|..+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 334478999999999999999986 568999997 5 556655442 5799999998762 33
Q ss_pred -CC-cEEEeccccc
Q 024350 251 -KA-DTIFMKVICV 262 (269)
Q Consensus 251 -~g-D~~~l~~iLh 262 (269)
.. |++++.-.++
T Consensus 159 ~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 159 QGKPDIVYLDPMYP 172 (258)
T ss_dssp HCCCSEEEECCCC-
T ss_pred CCCccEEEECCCCC
Confidence 33 9998865443
No 247
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.06 E-value=0.00041 Score=59.28 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=53.4
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCC------CCCceEEecccCC-cC-----CCC-cEE
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-SV-----PKA-DTI 255 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~~-----P~g-D~~ 255 (269)
.....+|+|+|||+|..+..+++..++ .+++.+|+ +..++.+++ .++|+++.+|+.+ +. +.. |++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 445579999999999999999999887 78999997 666665543 2589999999876 22 333 888
Q ss_pred Eec
Q 024350 256 FMK 258 (269)
Q Consensus 256 ~l~ 258 (269)
++.
T Consensus 161 l~d 163 (274)
T 3ajd_A 161 LLD 163 (274)
T ss_dssp EEE
T ss_pred EEc
Confidence 875
No 248
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=97.05 E-value=7.6e-05 Score=63.35 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=49.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCC-eEEEeeh-hHHHHhCCCC-----------------------------------
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHI-KGINYDL-LYVIKNAPSY----------------------------------- 235 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~vv~Dl-p~vv~~a~~~----------------------------------- 235 (269)
...+|||||||+|.++..++.. .. +++.+|+ |..++.+++.
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4579999999999876655443 33 5899997 7777755421
Q ss_pred CCce-EEecccCCcCC-----C-C-cEEEeccccccC
Q 024350 236 PGID-HVGGDLFESVP-----K-A-DTIFMKVICVCY 264 (269)
Q Consensus 236 ~ri~-~~~gD~~~~~P-----~-g-D~~~l~~iLhd~ 264 (269)
.+|+ ++.+|+.+..| . . |+++...+||..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i 169 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 169 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh
Confidence 1233 88999988322 2 3 999999999863
No 249
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.03 E-value=0.00092 Score=45.88 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=49.5
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
-.+..|++.|...+.++++|+.|||+.+|++ .. .+.+.|.-|...|++...+ ..++.|..++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs------~~-tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC------HH-HHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3456788889887544589999999999998 57 9999999999999998542 3357888765
No 250
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.00 E-value=0.00031 Score=62.48 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=51.8
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------------CCceEEecccCCcC-----C-C
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--------------PGIDHVGGDLFESV-----P-K 251 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--------------~ri~~~~gD~~~~~-----P-~ 251 (269)
++++|||||||.|..++++++..| .+++++|+ |.+++.++++ +|++++.+|.++-+ + +
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 578999999999999999998765 78999998 7888776531 28999999998732 2 3
Q ss_pred C-cEEEec
Q 024350 252 A-DTIFMK 258 (269)
Q Consensus 252 g-D~~~l~ 258 (269)
. |+|++-
T Consensus 267 ~fDvII~D 274 (364)
T 2qfm_A 267 EFDYVIND 274 (364)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEC
Confidence 3 888763
No 251
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=96.99 E-value=0.0017 Score=54.25 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHHhccC--CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhC----CCCCCceEEecccCCc--CC--
Q 024350 183 KVLESYKG--FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNA----PSYPGIDHVGGDLFES--VP-- 250 (269)
Q Consensus 183 ~~~~~~~~--~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a----~~~~ri~~~~gD~~~~--~P-- 250 (269)
.++..++. ++...+|+|||||+|.++..+++.- |+=+++.+|. |..++.+ ++.++|+.+.+|.-.+ .|
T Consensus 65 ~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~ 144 (233)
T 4df3_A 65 ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHL 144 (233)
T ss_dssp HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTT
T ss_pred HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccc
Confidence 44444432 5566899999999999999999985 8888999997 6766544 4457899998888763 22
Q ss_pred C-C-cEEEe
Q 024350 251 K-A-DTIFM 257 (269)
Q Consensus 251 ~-g-D~~~l 257 (269)
. . |++++
T Consensus 145 ~~~vDvVf~ 153 (233)
T 4df3_A 145 VEGVDGLYA 153 (233)
T ss_dssp CCCEEEEEE
T ss_pred cceEEEEEE
Confidence 2 2 77764
No 252
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=96.99 E-value=0.0016 Score=54.43 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHH----HHhCCCCCCceEEecccCCcC-----CCC-cEEEec
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYV----IKNAPSYPGIDHVGGDLFESV-----PKA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~v----v~~a~~~~ri~~~~gD~~~~~-----P~g-D~~~l~ 258 (269)
+....+|+|||||+|.++..+++.. |+-+++.+|+ |.. ++.+++..+|+++.+|...+. ++. |+++..
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 4556899999999999999999874 6788999997 544 344444578999999987631 223 888765
No 253
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.97 E-value=0.00092 Score=46.06 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=50.1
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKY 106 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 106 (269)
.+-.|.+.|... ++.|+.+||+.+|++ + .. .+++.|..|...|+|.+... +...|.+|+.++.
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgit---~--~~-aVr~hL~~Le~eGlV~~~~~-gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGLT---K--AR-DINAVLIDMERQGDVYRQGT-TPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCGG---G--HH-HHHHHHHHHHHTTSEEEECS-SSCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCCC---c--HH-HHHHHHHHHHHCCCEEecCC-CCCCeEeCHhHHh
Confidence 455678888887 599999999999996 2 33 78999999999999985422 3348999998763
No 254
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.93 E-value=0.001 Score=47.89 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=47.8
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
.+|..-.++.|+..|.. ++.|+.|||+.+|++ .. .+.+.|+.|...|+|..........|++|+
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE----GEFSVGELEQQIGIG------QP-TLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTCC------TT-HHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 34444556677788865 589999999999998 56 899999999999999853211224577765
No 255
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.90 E-value=0.0014 Score=47.92 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
.++.|+..|.. ++.|+.|||+.+|++ .. .+.+.|+.|...|+|..........|++++
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgis------~s-tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 83 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGMN------LT-TASANLQALKSGGLVEARREGTRQYYRIAG 83 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 34556666765 589999999999998 67 999999999999999854211112466654
No 256
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=96.88 E-value=0.001 Score=63.32 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=63.8
Q ss_pred CchhccccCcchHHHHHHHHHhhchhhHHHHH-HhccCCCCccEEEEeCCCchHHHHHHHHH----CCCCeEEEeehhHH
Q 024350 154 HIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVL-ESYKGFEHVKKLVDVGGGLGATLNMIISK----YPHIKGINYDLLYV 228 (269)
Q Consensus 154 ~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~~~-~~~~~~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~vv~Dlp~v 228 (269)
..||.+++||.+-..+.+|+...-. .++ +.-. -.+...|+|||+|+|-++...+++ .-++++..++-.+.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~Al~----d~~~~~~~-~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKCLL----DRVPEEEK-DTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH----HHSCGGGT-TTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHH----Hhhhhccc-cCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 3488888888877777777654111 111 1111 124578999999999874444333 23346777886555
Q ss_pred HHhCCC-------CCCceEEecccCC-cCCC-CcEEE
Q 024350 229 IKNAPS-------YPGIDHVGGDLFE-SVPK-ADTIF 256 (269)
Q Consensus 229 v~~a~~-------~~ri~~~~gD~~~-~~P~-gD~~~ 256 (269)
+..+++ .++|+++.||+.+ ..|+ .|+++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 555543 2899999999999 8895 58875
No 257
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.88 E-value=0.0013 Score=59.89 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcCCC-CcEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESVPK-ADTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~P~-gD~~~l 257 (269)
+..+|+|+|||+|.++..+++. ..+++.+|. |..++.++++ + ++++.+|+++..+. -|++++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence 4579999999999999999987 457899997 7888777642 4 99999999885554 488876
No 258
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.87 E-value=0.00095 Score=49.55 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=51.6
Q ss_pred HHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhc
Q 024350 27 PAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (269)
Q Consensus 27 ~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s 104 (269)
+.+|..-.++.|+..|.. +++|+.+||+.+|++ .. .+.+.|+.|...|+|........-.|++|+.+
T Consensus 12 ~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is------~~-tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR----GPATVSELAKPFDMA------LP-SFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 345556677888888885 689999999999998 67 99999999999999985422122457777644
No 259
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.85 E-value=0.00069 Score=58.06 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=47.9
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|+..|+|. ++.+++|++++...
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl~------ks-Tv~RlL~tL~~~G~v~---~~~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDLP------KS-SAHGLLAVMTELDLLA---RSADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTCC---------CHHHHHHHHHHTTSEE---ECTTSEEEECTHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE---ECCCCcEEehHHHH
Confidence 56899998864 589999999999997 56 8999999999999999 44457899987543
No 260
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.84 E-value=0.00087 Score=47.84 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=48.4
Q ss_pred HHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChh
Q 024350 29 AMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (269)
Q Consensus 29 ~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~ 103 (269)
+|..-.++.|+..|.. ++.|+.|||+.+|++ .. .+.+.|+.|...|+|........-.|++++.
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQLS------QS-ALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 4444556778888876 589999999999998 67 9999999999999998532112244777653
No 261
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.82 E-value=0.0015 Score=46.29 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=47.2
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhc
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s 104 (269)
.-.++.|+..|... ++.|..|||+.+|++ .. .+.+.|+.|...|++..........|.+|+.+
T Consensus 23 ~~~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 23 HPKRLLILCMLSGS---PGTSAGELTRITGLS------AS-ATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp SHHHHHHHHHHTTC---CSEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred ChHHHHHHHHHHhC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 34566777888663 589999999999998 67 99999999999999985321122347776643
No 262
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.81 E-value=0.0017 Score=47.68 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCC--HHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 14 FSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLS--VSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 14 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s--~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
...+++++.+.|...+| ..|.. ++.+ +.||++.+ |++ .. .+.+.|+.|...|+|++.
T Consensus 17 ~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 17 SESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGIS------ST-ILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp TSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCCC------HH-HHHHHHHHHHHCCCEEEe
Confidence 34455556666654444 34443 5777 99999999 998 67 999999999999999954
Q ss_pred eecCCCeEecChhchhhh
Q 024350 91 FVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 91 ~~~~~~~y~~t~~s~~l~ 108 (269)
.. ....|++|+.|+.+.
T Consensus 77 ~~-r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 77 SG-QITTYALTEKGMNVR 93 (111)
T ss_dssp ES-SSEEEEECHHHHHHH
T ss_pred ec-CcEEEEECccHHHHH
Confidence 22 346799999987665
No 263
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.79 E-value=0.0014 Score=46.52 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=51.9
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceee--c-CCCeEecChhc
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV--D-GQRLYSLAPVS 104 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~--~-~~~~y~~t~~s 104 (269)
.++..-.++.|+..|... ++.|..+||+.+|++ .. .+.+.|+.|...|++..... + ....|.+|+.+
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~is------~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDLT------PG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence 355556677888888754 589999999999998 67 99999999999999985321 1 12358888877
Q ss_pred h
Q 024350 105 K 105 (269)
Q Consensus 105 ~ 105 (269)
.
T Consensus 81 ~ 81 (100)
T 1ub9_A 81 M 81 (100)
T ss_dssp H
T ss_pred H
Confidence 5
No 264
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.76 E-value=0.00067 Score=59.76 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=49.9
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------C-CceEEecccCCcC------CCC-cEEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------P-GIDHVGGDLFESV------PKA-DTIF 256 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~-ri~~~~gD~~~~~------P~g-D~~~ 256 (269)
...+|||+|||+|.++..+++... +++.+|+ |..++.++++ + +++++.+|+++.. ... |+++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 346899999999999999998754 8999997 7788776542 2 5999999998732 223 9988
Q ss_pred e
Q 024350 257 M 257 (269)
Q Consensus 257 l 257 (269)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 7
No 265
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.75 E-value=0.002 Score=55.12 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC--CCCceEEecccCC
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS--YPGIDHVGGDLFE 247 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~--~~ri~~~~gD~~~ 247 (269)
...+++.+. ......+||++||.|..+..|+++ +.+.+++|. |..++.+++ .+|++++.+||-+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 666689999999999999999998 778999997 677765432 2799999999976
No 266
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.74 E-value=0.0011 Score=58.47 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=50.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcCCCCcEEEec
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESVPKADTIFMK 258 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~P~gD~~~l~ 258 (269)
...+|+|+|||+|.++.. ++ ...+++.+|+ |..++.++++ ++++++.+|.++...+-|++++.
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 457999999999999999 76 5778999998 7888776542 58999999998844223888874
No 267
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.74 E-value=0.003 Score=45.91 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCCCHHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 49 AKLSVSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.+..||++.+ |++ .. .+.+.|+.|...|+|++.....+ -.|++|+.|+.+.
T Consensus 26 ~~~~~~eLa~~l~~is------~~-tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 26 GKKRTSELKRLMPNIT------QK-MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp CCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 589999999999 998 67 99999999999999996422111 3589998875443
No 268
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.72 E-value=0.0019 Score=48.25 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChh
Q 024350 27 PAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (269)
Q Consensus 27 ~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~ 103 (269)
..+|..-.++.|+..|... ++.|+.+||+.+|++ .. .+.+.|+.|...|++..........|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGVT------IA-NASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 3444555677889999854 589999999999998 67 9999999999999998431111235777653
No 269
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.72 E-value=0.0021 Score=46.98 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=46.9
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
-.++.|+..|.. ++.|..+||+.+|++ .. .+.+.|+.|...|++..........|.+|+.+.
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~is------~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPVS------RQ-AIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 456677888844 589999999999998 67 999999999999999853211123377777553
No 270
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.67 E-value=0.0029 Score=54.65 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHHHhccCCC-CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHh-CCCCCCceEEe-cccCC----cCCC--C
Q 024350 183 KVLESYKGFE-HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKN-APSYPGIDHVG-GDLFE----SVPK--A 252 (269)
Q Consensus 183 ~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~-a~~~~ri~~~~-gD~~~----~~P~--g 252 (269)
.+++.+. .. ...+++|||||+|.++..++++ +.-+++.+|+ |.+++. .+..+|+..+. .|+.. .+|. -
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 4455555 33 3469999999999999988886 5568999997 566654 33446665443 24322 2453 3
Q ss_pred cEEEeccccccC
Q 024350 253 DTIFMKVICVCY 264 (269)
Q Consensus 253 D~~~l~~iLhd~ 264 (269)
|++++...+|+.
T Consensus 153 D~v~~d~sf~sl 164 (291)
T 3hp7_A 153 SFASIDVSFISL 164 (291)
T ss_dssp SEEEECCSSSCG
T ss_pred CEEEEEeeHhhH
Confidence 888877776643
No 271
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=96.66 E-value=0.001 Score=56.49 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=53.3
Q ss_pred HHHhccCCCCc--cEEEEeCCCchHHHHHHHHHCCCCeEEEeehhH-H-------HHhCCC-------C-CCceEEeccc
Q 024350 184 VLESYKGFEHV--KKLVDVGGGLGATLNMIISKYPHIKGINYDLLY-V-------IKNAPS-------Y-PGIDHVGGDL 245 (269)
Q Consensus 184 ~~~~~~~~~~~--~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~-v-------v~~a~~-------~-~ri~~~~gD~ 245 (269)
+.+... ..+. .+|+|+|||.|..+..++++ ..+++.+|+-+ + ++.++. . +||+++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344444 4444 79999999999999999998 56899999844 3 332221 1 5799999998
Q ss_pred CCc---CCCC-cEEEeccccc
Q 024350 246 FES---VPKA-DTIFMKVICV 262 (269)
Q Consensus 246 ~~~---~P~g-D~~~l~~iLh 262 (269)
.+- ++.. |++++--..+
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFP 175 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCC
Confidence 762 3334 9998865443
No 272
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.60 E-value=0.002 Score=50.07 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 26 LPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 26 ~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
...+|..-.++.|+..|.. +++|+.+||+.+|++ .. .+.+.|+.|...|+|........-.|++|+.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgls------~s-tvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPAS------RS-AISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 4566777788889999985 689999999999998 67 999999999999999854211123588877553
No 273
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.58 E-value=0.0032 Score=52.99 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=47.5
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhc
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s 104 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|...|++.+ ...+.|++++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~---~~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNMS------VS-NAYKYMVVLEEKGFVLR---KKDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---CTTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEE---CCCCcEEECHHH
Confidence 45778887753 479999999999997 57 99999999999999994 346889998754
No 274
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.56 E-value=0.0028 Score=45.20 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=49.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHH----HHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEI----VAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVR 109 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eL----A~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~ 109 (269)
++.++..|... +++|..+| |+.++++ .. .+.++++.|...|++.+........|.+|+.|+.+..
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~is------~~-tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPMS------TA-TFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCCC------HH-HHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHH
Confidence 34466666664 58999999 9999998 67 9999999999999998542222356888888875553
No 275
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.55 E-value=0.0032 Score=57.25 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=54.0
Q ss_pred HhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCc---CCC-C-cE
Q 024350 186 ESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFES---VPK-A-DT 254 (269)
Q Consensus 186 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~---~P~-g-D~ 254 (269)
..++ .....+|+|+|||+|..+..+++..|+.+++.+|+ |..++.++++ -+++++.+|+.+. ++. . |+
T Consensus 240 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 318 (429)
T 1sqg_A 240 TWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 318 (429)
T ss_dssp HHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred HHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCE
Confidence 3444 44557999999999999999999999988999997 5555544332 3589999999872 443 3 99
Q ss_pred EEe
Q 024350 255 IFM 257 (269)
Q Consensus 255 ~~l 257 (269)
+++
T Consensus 319 Vl~ 321 (429)
T 1sqg_A 319 ILL 321 (429)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 276
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.54 E-value=0.0023 Score=46.41 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 31 QAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 31 ~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
..-.++.|+..|.. ++.|+.|||+.+|++ .. .+.+.|+.|...|++..........|++++
T Consensus 24 ~~~~r~~IL~~L~~----~~~~~~ela~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 84 (106)
T 1r1u_A 24 GDYNRIRIMELLSV----SEASVGHISHQLNLS------QS-NVSHQLKLLKSVHLVKAKRQGQSMIYSLDD 84 (106)
T ss_dssp CSHHHHHHHHHHHH----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred CCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 34456677777875 589999999999998 67 999999999999999853211112466654
No 277
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.54 E-value=0.0052 Score=46.50 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=56.3
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHHH-----HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Q 024350 8 EEEANNFSYAMELASAIVLPAAMQ-----AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (269)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~L~-----~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~ 82 (269)
++....+.++.+.+........-. ...++.++..|... +++|..+||+.++++ .. .+.++++.|.
T Consensus 7 ~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~ 76 (142)
T 3ech_A 7 PDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCRD------KA-LITRKIRELE 76 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC---------C-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCCC------HH-HHHHHHHHHH
Confidence 344444555554444333222222 34566688888876 489999999999997 56 8999999999
Q ss_pred hcCcccceeecCC---CeEecChhchhhh
Q 024350 83 SYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 83 ~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
..|+|.+.....+ -.+.+|+.|+.+.
T Consensus 77 ~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 77 GRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HTTSEEC----------CCEECHHHHHHH
T ss_pred HCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 9999995321112 2367887776544
No 278
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.52 E-value=0.0062 Score=46.16 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccceee
Q 024350 14 FSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (269)
Q Consensus 14 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~ 92 (269)
...+++++.+.|...+|. .|.. |+.+..||++.+ |++ .. .|.+.|+.|...|+|++...
T Consensus 16 i~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~gIs------~~-~Ls~~L~~Le~~GLV~R~~~ 75 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPSIT------QR-MLTLQLRELEADGIVHREVY 75 (131)
T ss_dssp HHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhcccC------HH-HHHHHHHHHHHCCCEEEEec
Confidence 344555555566555544 3333 689999999999 998 67 99999999999999996422
Q ss_pred cC---CCeEecChhchhhhc
Q 024350 93 DG---QRLYSLAPVSKYFVR 109 (269)
Q Consensus 93 ~~---~~~y~~t~~s~~l~~ 109 (269)
.+ .-.|++|+.|+.|..
T Consensus 76 ~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 76 HQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp CSSSCEEEEEECTTGGGGHH
T ss_pred CCCCCeEEEEECHhHHHHHH
Confidence 11 135999999986663
No 279
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.51 E-value=0.016 Score=44.24 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=49.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc--eeecCC---CeEecChhchhhhc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC--SFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~--~~~~~~---~~y~~t~~s~~l~~ 109 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.+ .+...+ -.+.+|+.|+.+..
T Consensus 43 ~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 43 QLAMINVIYST---PGISVADLTKRLIIT------GS-SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 45577777775 489999999999998 67 99999999999999995 321222 24888888875543
No 280
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.50 E-value=0.0025 Score=61.67 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHH------------------------------------------CCCCe
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISK------------------------------------------YPHIK 219 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~------------------------------------------~P~l~ 219 (269)
..++.... |.....|+|.+||+|.++++.+.. .|+.+
T Consensus 180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 34455555 777789999999999999987764 34467
Q ss_pred EEEeeh-hHHHHhCCCC-------CCceEEecccCC-cCC--C-C-cEEEec
Q 024350 220 GINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-SVP--K-A-DTIFMK 258 (269)
Q Consensus 220 ~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~~P--~-g-D~~~l~ 258 (269)
++++|+ |.+++.|+.+ ++|++..+|+++ ..| . . |+++..
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 899997 8888777653 569999999987 334 2 3 777653
No 281
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.49 E-value=0.013 Score=43.88 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=51.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC---CCeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG---QRLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~---~~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.+.++.|...|++....... .-.|.+|+.|+.+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~is------~~-~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQID------RA-AVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345578888775 489999999999998 67 9999999999999998542211 23488999998766
No 282
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.49 E-value=0.005 Score=45.12 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=45.9
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 38 VFEIITKAGPGAKLSVSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 38 lfd~L~~~g~~~~~s~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
|+..|.. ++++..+||+.+ +++ .. .+.+.|+.|...|+|.......+ -.|.+|+.|+.+.
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~is------~~-tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDGIT------QR-VLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTTCC------HH-HHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 3445554 489999999999 998 67 99999999999999996422111 2489999887554
No 283
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.49 E-value=0.0042 Score=46.69 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
++.|.++||+.+|++ .. .+.++|+.|...|+|... +...|.|.++.
T Consensus 25 ~~~s~~ela~~~~i~------~~-~v~~il~~L~~~Glv~~~-~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS------EH-YLEQLVSPLRNAGLVKSI-RGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred CcCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEec-CCCCCceEeCC
Confidence 689999999999997 67 999999999999999853 11236788754
No 284
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.48 E-value=0.0021 Score=47.73 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChh
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~ 103 (269)
.+|..-.++.|+..|.. ++.++.|||+.+|++ .. .+.+.|+.|...|++........-.|++|+.
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgis------~s-tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLGLT------RS-NVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSSC------HH-HHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 34444556777888875 589999999999998 67 9999999999999998532111234777653
No 285
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.48 E-value=0.0011 Score=60.03 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=48.9
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------CCceEEecccCCcCC----CC-cEEEe
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--------PGIDHVGGDLFESVP----KA-DTIFM 257 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--------~ri~~~~gD~~~~~P----~g-D~~~l 257 (269)
..+|+|+|||+|..+..+++. ..+++.+|+ |..++.++.+ ++|+++.+|+++.++ .. |++++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 479999999999999998877 468999997 7777666432 579999999987322 23 99887
No 286
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.43 E-value=0.0026 Score=53.27 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=48.5
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhh
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYF 107 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l 107 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|...|+|.+. ...++|++++....|
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGLP------RS-TVQRIINALEEEFLVEAL--GPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTSC------HH-HHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHH
Confidence 45778887753 479999999999997 57 899999999999999943 124789998765433
No 287
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.39 E-value=0.0027 Score=58.03 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=55.8
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHC-------------CCCeEEEeeh-hHHHHhCCCC------C--CceEE
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PHIKGINYDL-LYVIKNAPSY------P--GIDHV 241 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------------P~l~~vv~Dl-p~vv~~a~~~------~--ri~~~ 241 (269)
+++... .....+|+|.|||+|.++..+.+.. +..+++++|+ |.+++.++.+ . +++++
T Consensus 163 mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~ 241 (445)
T 2okc_A 163 MVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV 241 (445)
T ss_dssp HHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred HHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe
Confidence 344443 3345689999999999999988764 5577899997 7777766531 2 78899
Q ss_pred ecccCCc-CCCC-cEEEeccccc
Q 024350 242 GGDLFES-VPKA-DTIFMKVICV 262 (269)
Q Consensus 242 ~gD~~~~-~P~g-D~~~l~~iLh 262 (269)
.+|.+.. .... |+++..--++
T Consensus 242 ~gD~l~~~~~~~fD~Iv~NPPf~ 264 (445)
T 2okc_A 242 CEDSLEKEPSTLVDVILANPPFG 264 (445)
T ss_dssp ECCTTTSCCSSCEEEEEECCCSS
T ss_pred eCCCCCCcccCCcCEEEECCCCC
Confidence 9999984 3334 9888764443
No 288
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.35 E-value=0.001 Score=59.83 Aligned_cols=65 Identities=14% Similarity=-0.016 Sum_probs=50.2
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------C--CceEEecccCCcCC------CC-cEE
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------P--GIDHVGGDLFESVP------KA-DTI 255 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~--ri~~~~gD~~~~~P------~g-D~~ 255 (269)
....+|+|+|||+|.++..+++.. .-+++.+|+ |..++.++++ + +++++.+|.++.++ .. |++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 345799999999999999999863 237899997 7788776542 3 89999999987322 23 888
Q ss_pred Ee
Q 024350 256 FM 257 (269)
Q Consensus 256 ~l 257 (269)
++
T Consensus 290 i~ 291 (385)
T 2b78_A 290 II 291 (385)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 289
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.34 E-value=0.0014 Score=55.73 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=46.8
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC-CCeEecChhch
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLAPVSK 105 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~-~~~y~~t~~s~ 105 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|+..|+|.+ +. .++|++++...
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl~------ks-T~~RlL~tL~~~G~v~~---~~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGMN------KA-TVYRLMSELQEAGFVEQ---VEGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEE---CSSSSEEEECTTHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---cCCCCcEEcCHHHH
Confidence 34677776533 589999999999997 57 99999999999999994 33 38999987543
No 290
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.33 E-value=0.0034 Score=60.23 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=60.3
Q ss_pred CchhccccCcchHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHH----C---------CCCeE
Q 024350 154 HIYDYLGVDSSFNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK----Y---------PHIKG 220 (269)
Q Consensus 154 ~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~----~---------P~l~~ 220 (269)
..||.+.+|+.+...|.+|+...- .+..++-.+...|+|||||+|-++...+++ . ...++
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al-------~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL-------KDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-------HHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH-------HHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 347777788777777777765521 111110124578999999999996543322 2 23477
Q ss_pred EEeehh-HHHHhCC-----C-CCCceEEecccCC-cC------CC-CcEEE
Q 024350 221 INYDLL-YVIKNAP-----S-YPGIDHVGGDLFE-SV------PK-ADTIF 256 (269)
Q Consensus 221 vv~Dlp-~vv~~a~-----~-~~ri~~~~gD~~~-~~------P~-gD~~~ 256 (269)
+.+|-. ..+...+ . .++|+++.+|+-+ .. |+ .|+++
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 888863 3332211 1 2789999999988 66 53 58875
No 291
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.30 E-value=0.0013 Score=59.19 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=50.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------CCceEEecccCCcC------CCC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFESV------PKA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~~~------P~g-D~~~l 257 (269)
...+|+|+|||+|.++..+++. +..+++.+|+ |..++.++++ ++++++.+|+++.. +.. |++++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5579999999999999999987 4457899997 7777766542 38999999998732 223 98887
No 292
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.30 E-value=0.019 Score=44.82 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=50.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
.++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+..
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGVQ------PS-ATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 345577788775 489999999999998 67 99999999999999985321112 23788888875553
No 293
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.30 E-value=0.003 Score=58.13 Aligned_cols=66 Identities=5% Similarity=0.045 Sum_probs=51.9
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCCC------CCceEEecccCC-c--CCCC-cEEEe
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE-S--VPKA-DTIFM 257 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~-~--~P~g-D~~~l 257 (269)
.....+|+|+|||+|..+..+++..++ .+++.+|+ |..++.++++ . |+++.+|..+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 445679999999999999999999876 68899997 6777666542 5 9999999876 2 3333 99986
No 294
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.28 E-value=0.0073 Score=45.69 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccceee
Q 024350 14 FSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (269)
Q Consensus 14 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~ 92 (269)
...+++++.+.|...+ +..|.. ++++..||++.+ |++ .. .+.+.|+.|...|+|++...
T Consensus 25 ~~~~l~~l~~~w~l~I---------L~~L~~----g~~~~~eLa~~l~gis------~~-tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLI---------LVALRD----GTHRFSDLRRXMGGVS------EX-MLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp HHHHHHHHHSHHHHHH---------HHHGGG----CCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHcCCcHHHH---------HHHHHc----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCcEEEEec
Confidence 3444555555554433 344543 589999999999 798 67 99999999999999996422
Q ss_pred cCC---CeEecChhchhhh
Q 024350 93 DGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 93 ~~~---~~y~~t~~s~~l~ 108 (269)
..+ -.|++|+.|+.+.
T Consensus 85 ~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 85 PVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp CSSSCEEEEEECHHHHHHH
T ss_pred CCCCCeEEEEECccHHHHH
Confidence 111 2599999887655
No 295
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.28 E-value=0.0013 Score=59.04 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=50.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCCcC------CCC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFESV------PKA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~~~------P~g-D~~~l 257 (269)
+..+|+|+|||+|.++..+++. ..+++.+|+ |..++.++++ +.++++.+|.++.. +.. |++++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5679999999999999999998 567899997 7888776642 45999999998732 223 99887
No 296
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.28 E-value=0.0072 Score=45.88 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=43.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
+++|..+||+.++++ .. .+.++|+.|...|+|.+ .....|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~vs------~~-tvs~~l~~Le~~Glv~r---~~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVH------PS-SVTKMVQKLDKDEYLIY---EKYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE---ETTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE---eeCceEEEchhHHHHH
Confidence 589999999999998 67 99999999999999994 3357899999887554
No 297
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.24 E-value=0.0071 Score=50.31 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHhccCCC-CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhC
Q 024350 183 KVLESYKGFE-HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNA 232 (269)
Q Consensus 183 ~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a 232 (269)
.+++.++ .. ...+|||||||+|.++..++++ +..+++.+|+ |.+++.+
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a 76 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWK 76 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHH
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHH
Confidence 3445554 32 3469999999999999999988 3348999997 5565543
No 298
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.22 E-value=0.0075 Score=43.71 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCchhHHHHHHHHHHHHHhcCcccceee
Q 024350 14 FSYAMELASAIVLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (269)
Q Consensus 14 ~~~l~~~~~~~~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~-~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~ 92 (269)
...+++++.+.|...+| ..|.. ++++..||++.+ |++ .. .+.+.|+.|...|+|++...
T Consensus 15 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 15 VRKSMQIFAGKWTLLII---------FQINR----RIIRYGELKRAIPGIS------EK-MLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHHHHTSSSHHHHH---------HHHTT----SCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh----CCcCHHHHHHHcccCC------HH-HHHHHHHHHHHCCCEEEeec
Confidence 44455555555554443 34443 589999999999 497 67 99999999999999996422
Q ss_pred cCC---CeEecChhchhhh
Q 024350 93 DGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 93 ~~~---~~y~~t~~s~~l~ 108 (269)
..+ -.|.+|+.|+.+.
T Consensus 75 ~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 75 PEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp CSSSCEEEEEECHHHHTTH
T ss_pred CCCCCeeEEEECccHHHHH
Confidence 111 3599999986544
No 299
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.22 E-value=0.0045 Score=46.19 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=45.9
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChh
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~ 103 (269)
.-.++.|+..|.. ++.++.+||+.+|++ .. .+.+.|+.|...|++........-.|++++.
T Consensus 45 ~~~rl~IL~~L~~----~~~s~~ela~~lgis------~s-tvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 45 DPNRLRLLSLLAR----SELCVGDLAQAIGVS------ES-AVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp CHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 3456678888875 589999999999998 67 9999999999999998532111124666543
No 300
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.18 E-value=0.019 Score=43.35 Aligned_cols=65 Identities=6% Similarity=0.151 Sum_probs=49.8
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFVR 109 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~~ 109 (269)
.++.++..|...| + |..+||+.++++ .. .+.++++.|...|+|.+.+...+. .+.+|+.|+.+..
T Consensus 38 ~~~~iL~~l~~~~---~-~~~~la~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 38 LDFSILKATSEEP---R-SMVYLANRYFVT------QS-AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHSC---E-EHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCC---C-CHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 4556788888753 5 999999999998 67 999999999999999964211111 4889998875553
No 301
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.17 E-value=0.0092 Score=40.91 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=38.1
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
..|++.|... +++|..|||+.+|++ .. .+++.|+.|...|++..
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgvs------~~-tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAVT------DY-QARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 3467778775 589999999999998 67 99999999999999984
No 302
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.17 E-value=0.0059 Score=54.30 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=51.7
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCCCCCceEEecccCCcCC-CC--cEEEeccc
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPSYPGIDHVGGDLFESVP-KA--DTIFMKVI 260 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~~~ri~~~~gD~~~~~P-~g--D~~~l~~i 260 (269)
....++||+|++.|.++..++++ +.+++.+|.-+.-......++|+++.+|.|+..| .+ |+++.-.+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 45679999999999999999988 6789999964433333456899999999999545 33 77765443
No 303
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0063 Score=51.15 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=52.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRN 110 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~ 110 (269)
.++.|+..|... +++|..|||+.+|++ .. .+.|.|+.|...|++.+. .....|.+|+.+..+...
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgls------ks-Tv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~ 217 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDKS------EK-TLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHH
Confidence 345577777665 589999999999998 67 999999999999999953 235789999999866533
No 304
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.16 E-value=0.0086 Score=42.67 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhc
Q 024350 51 LSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVR 109 (269)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~ 109 (269)
++..+||..+|++ ++ .+++.++.|...|++.. . .+.|.+|+.|..+..
T Consensus 21 ~~~t~La~~~~ls------~~-~~~~~l~~L~~~GLI~~---~-~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANLS------YA-LTGRYIKMLMDLEIIRQ---E-GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEE---E-CCeeEEChhHHHHHH
Confidence 9999999999998 78 99999999999999994 3 467999999986653
No 305
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.10 E-value=0.0067 Score=41.49 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred hhHHHHhc-----CCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 38 VFEIITKA-----GPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 38 lfd~L~~~-----g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
|++.|... | +|.|+.|||+.+|++ +. .+++-|..|...|++..
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgvS------~~-TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGLS------IY-QVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEe
Confidence 56666664 5 699999999999998 67 99999999999999984
No 306
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.07 E-value=0.0098 Score=45.07 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=50.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.+...+ -.+.+|+.|+.+.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSLP------KQ-TVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 455677888776 479999999999998 67 99999999999999995321112 2488888887655
No 307
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.06 E-value=0.029 Score=43.40 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=50.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+..
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFIK------PQ-SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------GG-GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 44577788776 589999999999998 56 89999999999999996421122 24788888875553
No 308
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.06 E-value=0.0036 Score=53.03 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=45.8
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|...|++.+ +..+.|++++...
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl~------ks-tv~r~l~tL~~~G~v~~---~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKLP------KT-TVVRLVATMCARSVLTS---RADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEE---CTTSCEEECHHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---CCCCeEEecHHHH
Confidence 44666675432 589999999999997 57 89999999999999994 3334899987543
No 309
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.03 E-value=0.0079 Score=41.55 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=46.4
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhc
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s 104 (269)
.....|.+.|... + +|+.|||+++|++ .. .+++.|.-|...|++.+.. ..+-.|+++...
T Consensus 17 ~~~~~IL~lL~~~---g-~sa~eLAk~LgiS------k~-aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE---G-ATAAQLTRQLNME------KR-EVNKALYDLQRSAMVYSSD-DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS---T-EEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEECS-SSSCEEESCC--
T ss_pred HHHHHHHHHHHHc---C-CCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeCC-CCCCcceeccCc
Confidence 3445677888863 4 9999999999998 67 9999999999999998642 246778887643
No 310
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.01 E-value=0.0095 Score=44.63 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=49.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.|.+|+.|+.+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAMD------AA-TIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 355678888765 489999999999998 67 99999999999999995321111 2378888876554
No 311
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.99 E-value=0.017 Score=50.73 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCC--CCCceEEecccCC
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPS--YPGIDHVGGDLFE 247 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~--~~ri~~~~gD~~~ 247 (269)
...+++.+. ......+||..+|.|..+.+|+++. |+.+.+.+|. |..++.++. .+|++++.+||-+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 356677766 5556899999999999999999985 8899999998 778877653 3799999999876
No 312
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.97 E-value=0.012 Score=45.28 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC--CCeEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG--QRLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~--~~~y~~t~~s~~l~ 108 (269)
++.+..||++.+|++ .. .+.+.|+.|...|+|++..... .-.|++|+.|+.+.
T Consensus 36 g~~~~~eLa~~lgis------~~-tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA------KN-ILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 589999999999998 67 9999999999999999642111 13699999886544
No 313
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.96 E-value=0.005 Score=52.05 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=49.7
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcC
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRN 110 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~ 110 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|...|++. ++ ++.|++++....|...
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~~L~~~G~v~---~~-~~~Y~Lg~~~~~l~~~ 78 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGLS------RP-AVRRILLTLQKLGYVA---GS-GGRWSLTPRVLSIGQH 78 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---EE-TTEEEECGGGHHHHTT
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE---eC-CCEEEEcHHHHHHHHH
Confidence 45667776533 589999999999997 57 8999999999999999 44 5899999876555533
No 314
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.95 E-value=0.025 Score=43.00 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=47.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFVR 109 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~~ 109 (269)
.++.++..|...+ +++|..+||+.++++ .. .+.++++-|...|+|.+.+...+. .+.+|+.|+.+..
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMGLD------PS-QIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHTCC------HH-HHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 3455677776644 578999999999998 66 999999999999999953211111 2778888775553
No 315
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.95 E-value=0.041 Score=42.46 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=49.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+..
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVME------QS-TTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 44577778775 489999999999998 66 99999999999999995321112 34788888875553
No 316
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.95 E-value=0.043 Score=41.89 Aligned_cols=64 Identities=6% Similarity=0.084 Sum_probs=47.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLME------QS-RMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 34466677664 589999999999998 66 99999999999999985311111 3478888887554
No 317
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.92 E-value=0.016 Score=39.69 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=37.9
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 38 VFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 38 lfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
|.+.|... +.+|+.|||+.++++ +. .++|-|..|...|++.+
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~VS------~~-TIRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNTP------QP-MINAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 66788876 599999999999998 77 99999999999999984
No 318
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.90 E-value=0.011 Score=44.25 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=48.8
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+. .+.+|+.|+.+.
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 44567777765 489999999999998 67 999999999999999954211222 378888887554
No 319
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.90 E-value=0.015 Score=44.00 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHhcChhHHHHh-cCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 33 VVELDVFEIITK-AGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 33 a~~lglfd~L~~-~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
..++.++..|.. . +++|..+||+.++++ .. .+.++++.|...|+|.+.+...+ -.+.+|+.|+.+.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i~------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERMR------SS-NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 445677888876 4 589999999999998 67 99999999999999985321111 2378888887554
No 320
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.90 E-value=0.0066 Score=46.81 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred CccEEEEeCCCch-HHHHHHHHHCCCCeEEEeeh-hHHHHhCCCCCCceEEecccCCcCCC---C-cEEE
Q 024350 193 HVKKLVDVGGGLG-ATLNMIISKYPHIKGINYDL-LYVIKNAPSYPGIDHVGGDLFESVPK---A-DTIF 256 (269)
Q Consensus 193 ~~~~vvDvGGG~G-~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~~ri~~~~gD~~~~~P~---g-D~~~ 256 (269)
...++|+||||.| ..+..|+++ -++.++..|+ |..++ ++..|+|++.++ + |+++
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEE
Confidence 4579999999999 577777753 5678899996 55554 888999997662 4 7763
No 321
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=95.86 E-value=0.0023 Score=57.62 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=50.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-------C-CceEEecccCCcCC------CC-cEEE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-------P-GIDHVGGDLFESVP------KA-DTIF 256 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-------~-ri~~~~gD~~~~~P------~g-D~~~ 256 (269)
+..+|+|+|||+|.++..+++.. ..+++.+|+ |..++.++++ + +++++.+|.++..+ .. |+++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 457899997 7777766542 3 79999999987322 23 9888
Q ss_pred ec
Q 024350 257 MK 258 (269)
Q Consensus 257 l~ 258 (269)
+.
T Consensus 299 ~d 300 (396)
T 3c0k_A 299 MD 300 (396)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 322
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.83 E-value=0.011 Score=45.31 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
++.|.++||+.++++ +. .+.++|..|...|+|... +...|-|.++.
T Consensus 27 ~~~s~~~IA~~~~i~------~~-~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLS------DL-YLEQLVGPLRNAGLIRSV-RGAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEC-SSSSSEEEESS
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCEEEec-CCCCCCeeecC
Confidence 589999999999997 67 999999999999999853 22246788754
No 323
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.82 E-value=0.013 Score=45.85 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
++.|.++||+.++++ +. .++++|..|...|+|... +...|-|.++.
T Consensus 43 ~~~s~~eIA~~~~i~------~~-~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLS------EH-YLEQLIGPLRNAGIVKSI-RGAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE-CSTTCEEEECS
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEe-cCCCCceEecC
Confidence 589999999999997 67 999999999999999854 22246788754
No 324
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=95.80 E-value=0.039 Score=49.26 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=52.5
Q ss_pred ccEEEEeCCCchHHHHHH--------HHHC-------CCCeEEEeehhHH-----HHhCCCC--------------CC--
Q 024350 194 VKKLVDVGGGLGATLNMI--------ISKY-------PHIKGINYDLLYV-----IKNAPSY--------------PG-- 237 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l--------~~~~-------P~l~~vv~Dlp~v-----v~~a~~~--------------~r-- 237 (269)
.-+|+|+|||+|..+..+ .+++ |++++..-|+|.. ....... .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999866655 3344 8889899898742 1211110 01
Q ss_pred -ceEEecccCC-cCCCC--cEEEeccccccCCC
Q 024350 238 -IDHVGGDLFE-SVPKA--DTIFMKVICVCYLN 266 (269)
Q Consensus 238 -i~~~~gD~~~-~~P~g--D~~~l~~iLhd~~d 266 (269)
+.-++|.|+. .+|.. |+++-+..||-.++
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~ 165 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQ 165 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeecc
Confidence 5667899999 68864 99999999997664
No 325
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.79 E-value=0.011 Score=44.22 Aligned_cols=64 Identities=11% Similarity=0.163 Sum_probs=48.3
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|...+...++ .|.+|+.|+.+.
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~~s------~~-tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFHVD------KG-TIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 44567777775 589999999999998 67 999999999999999953211122 277888776544
No 326
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=95.78 E-value=0.013 Score=54.02 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=51.7
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeeh-hHHHHhCCC------CCCceEEecccCC-c--CCCC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-S--VPKA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~--~P~g-D~~~l 257 (269)
...+|+|+|||+|..+..+++..+ .-+++.+|+ +..++.+++ .++|+++.+|..+ + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 457999999999999999999976 478999997 666665544 2579999999987 3 3444 99987
No 327
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.76 E-value=0.0049 Score=52.35 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=46.6
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhch
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSK 105 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~ 105 (269)
+.|++.|...+ +++|+.|||+.+|++ .. .+.|+|+.|...|+|. ++ ++.|++++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~tL~~~G~v~---~~-~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDLT------RA-TARRFLLTLVELGYVA---TD-GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEE---ES-SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE---ec-CCEEEEcHHHH
Confidence 45677776533 589999999999997 57 8999999999999999 44 58999987543
No 328
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.76 E-value=0.012 Score=44.68 Aligned_cols=64 Identities=8% Similarity=0.094 Sum_probs=48.6
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.+.+|+.|+.+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYLA------CS-TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 44577777775 489999999999998 67 99999999999999985321112 2377888877554
No 329
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=95.75 E-value=0.017 Score=50.17 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHC-CCCeEEEeeh-hHHHHhCCC------CCCceEEecccCCcCC-----CC-cEEE
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKY-PHIKGINYDL-LYVIKNAPS------YPGIDHVGGDLFESVP-----KA-DTIF 256 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~~~P-----~g-D~~~ 256 (269)
.....+|+|+|||+|..+..+++.. +.-+++.+|+ +..++.+++ ..+|+++.+|+.+..+ .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4455799999999999999999885 5678999997 666665543 2679999999876211 12 8887
Q ss_pred e
Q 024350 257 M 257 (269)
Q Consensus 257 l 257 (269)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 330
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.75 E-value=0.013 Score=41.03 Aligned_cols=43 Identities=9% Similarity=0.251 Sum_probs=38.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 38 VFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 38 lfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
|.+.|... |.+|+.|||+.++++ +. .++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~VS------~~-TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQTP------QP-LIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 66788876 599999999999998 77 999999999999999953
No 331
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.71 E-value=0.011 Score=44.38 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=49.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|...+...+ -.|.+|+.|+.+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACIL------RP-SMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 355677778775 489999999999998 67 99999999999999985421112 2377888877554
No 332
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=95.70 E-value=0.015 Score=39.31 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=47.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
+-.|+++|.++| +|++..+||+.+|++ -. -+.+.|..|-..|.+. .+....|.++
T Consensus 21 eekVLe~LkeaG--~PlkageIae~~Gvd------KK-eVdKaik~LKkEgkI~---SPkRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAG--SPVKLAQLVKECQAP------KR-ELNQVLYRMKKELKVS---LTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHT--SCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEE---EEETTEEEES
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHcCCcc---CCCCceeeCC
Confidence 456889999988 799999999999997 34 8999999999999998 3456788876
No 333
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.70 E-value=0.0092 Score=45.12 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=49.5
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
..++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|++.....+ -.+.+|+.|+.+.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKKD------TP-TVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 3445577777765 589999999999998 67 99999999999999995321112 3478888887555
No 334
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.69 E-value=0.054 Score=41.23 Aligned_cols=64 Identities=20% Similarity=0.164 Sum_probs=48.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEVK------PS-AVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 34477777765 489999999999998 67 99999999999999985321111 2477888776554
No 335
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.69 E-value=0.033 Score=41.94 Aligned_cols=63 Identities=5% Similarity=-0.022 Sum_probs=47.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|. . +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.+.+|+.|+.+.
T Consensus 39 ~~~iL~~l~-~---~~~~~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 39 DFLVLRATS-D---GPKTMAYLANRYFVT------QS-AITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHT-T---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHh-c---CCcCHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 445666776 3 689999999999998 67 99999999999999985421111 2377888776554
No 336
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.69 E-value=0.01 Score=44.40 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=48.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|++.......+ -.|.+|+.|+.+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGCV------PS-NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSSC------CT-THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345577778775 589999999999998 45 89999999999999985321112 2377888776554
No 337
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.66 E-value=0.028 Score=42.78 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=47.8
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.+...+ -.+.+|+.|+.+.
T Consensus 42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE---NPQTLNSIGRHLDLS------SN-TLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 345577777765 589999999999998 67 99999999999999995321112 2477888776544
No 338
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.65 E-value=0.012 Score=44.73 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC---CCeEecChhchhhh
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG---QRLYSLAPVSKYFV 108 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~---~~~y~~t~~s~~l~ 108 (269)
..++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.+..... .-.+.+|+.|+.+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGLD------KA-AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 3455677888776 489999999999998 67 9999999999999999532111 23477887776544
No 339
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.65 E-value=0.0085 Score=53.31 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=42.0
Q ss_pred cEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC------CCceEEecccCC
Q 024350 195 KKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY------PGIDHVGGDLFE 247 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~------~ri~~~~gD~~~ 247 (269)
.+|+|+|||+|.++..+++.. -+++.+|. |..++.++++ ++++++.+|.++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 679999999999999988754 47899997 7788776542 689999999876
No 340
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.61 E-value=0.0063 Score=58.94 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=48.9
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--------CCceEEecccCCcCC---CC-cEEEe
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--------PGIDHVGGDLFESVP---KA-DTIFM 257 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--------~ri~~~~gD~~~~~P---~g-D~~~l 257 (269)
..+|||+|||+|.++..+++... -+++.+|+ |..++.++++ ++++++.+|.++.++ .. |++++
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 46899999999999999988533 36899997 7777766542 489999999998322 23 98887
No 341
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.58 E-value=0.021 Score=43.72 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=50.1
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
..++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.|.+|+.|+.+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLSTT------KS-NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 3456678888775 489999999999998 67 99999999999999985321112 2377888776554
No 342
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.58 E-value=0.031 Score=42.91 Aligned_cols=65 Identities=8% Similarity=0.112 Sum_probs=46.7
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|...+ +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKVT------NG-NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSSC------CS-CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 455778884322 589999999999998 45 89999999999999995311111 2377888776554
No 343
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.019 Score=43.25 Aligned_cols=49 Identities=4% Similarity=-0.026 Sum_probs=42.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
++.|..+||+.++++ .. .+.+.++.|...|+|.+ .. ..|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~is------~~-tv~~~l~~Le~~Gli~r---~~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKIA------PS-SVFEEVSHLEEKGLVKK---KE-DGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---ET-TEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEe---cC-CeEEEChhHHHHH
Confidence 689999999999998 67 99999999999999994 33 6799999886544
No 344
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.54 E-value=0.015 Score=43.85 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=49.8
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.|.+|+.|+.+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~s------~~-tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGVA------KS-TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 355677778765 589999999999998 67 99999999999999995421112 2477888887554
No 345
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=95.53 E-value=0.034 Score=49.73 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=52.7
Q ss_pred ccEEEEeCCCchHHHHHHHHH-----------------CCCCeEEEeehh-----------HHH-Hh-----CCCCCC--
Q 024350 194 VKKLVDVGGGLGATLNMIISK-----------------YPHIKGINYDLL-----------YVI-KN-----APSYPG-- 237 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~-----------------~P~l~~vv~Dlp-----------~vv-~~-----a~~~~r-- 237 (269)
.-+|+|+||++|..+..++.. .|+++++.-|+| +.. +. ....+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999888777666 578888889998 211 11 111122
Q ss_pred ceEEecccCC-cCCCC--cEEEeccccccCCC
Q 024350 238 IDHVGGDLFE-SVPKA--DTIFMKVICVCYLN 266 (269)
Q Consensus 238 i~~~~gD~~~-~~P~g--D~~~l~~iLhd~~d 266 (269)
+.-++|.|+. .+|.. |+++-+..||=.++
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~ 164 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQ 164 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCC
Confidence 5567899999 78864 99999999995444
No 346
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.50 E-value=0.015 Score=43.83 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=48.4
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.+.+|+.|+.+.
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKVD------RT-TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34467777775 489999999999998 67 99999999999999995421112 2377888876554
No 347
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.49 E-value=0.017 Score=43.46 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=46.3
Q ss_pred cChhHHH-HhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 36 LDVFEII-TKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 36 lglfd~L-~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
+.++..| ... +++|..+||+.++++ .. .+.++++-|...|+|.......+ -.+.+|+.|+.+.
T Consensus 40 ~~iL~~l~~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 40 WLVLLHLARHR---DSPTQRELAQSVGVE------GP-TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHCS---SCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 4466777 443 689999999999998 67 99999999999999995321111 2367777766444
No 348
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.47 E-value=0.0075 Score=55.34 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=53.3
Q ss_pred HhccCCCCccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCC------CCCceEEecccCC-c--CCCC-c
Q 024350 186 ESYKGFEHVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPS------YPGIDHVGGDLFE-S--VPKA-D 253 (269)
Q Consensus 186 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~------~~ri~~~~gD~~~-~--~P~g-D 253 (269)
..++ .....+|+|+|||+|..+..+++..++ -+++.+|+ +..++.+++ ..+|+++.+|..+ + .+.. |
T Consensus 99 ~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 99 TAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEE
T ss_pred HHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCC
Confidence 3344 445679999999999999999998765 68899997 666665544 2579999999876 2 3433 9
Q ss_pred EEEe
Q 024350 254 TIFM 257 (269)
Q Consensus 254 ~~~l 257 (269)
+|++
T Consensus 178 ~Il~ 181 (456)
T 3m4x_A 178 RIVV 181 (456)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 349
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.44 E-value=0.016 Score=39.68 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=39.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
+..|++.|...+ +++.|++||++.+ +++ .. .+.|.|+.|+..|+|.+.
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is------~~-TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG------LA-TVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCeEEE
Confidence 455888887641 0389999999999 887 67 999999999999999854
No 350
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.43 E-value=0.0074 Score=54.31 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=46.6
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC-----CCceEEecccCCcC---CCC-cEEEe
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY-----PGIDHVGGDLFESV---PKA-DTIFM 257 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~-----~ri~~~~gD~~~~~---P~g-D~~~l 257 (269)
..+|||+|||+|.++..+++... +++.+|+ |..++.++++ -..++..+|.++.+ +.. |++++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 57999999999999999999744 4899997 7777776642 12356689998732 333 88876
No 351
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.39 E-value=0.016 Score=45.33 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=48.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.|+..|...+ +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 55 q~~vL~~L~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLP--PDQSQIQLAKAIGIE------QP-SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSC--SSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 455777777633 579999999999998 67 99999999999999995321112 3477888877555
No 352
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.39 E-value=0.029 Score=39.80 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=49.6
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHH-hCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcC
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVA-QIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRN 110 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~-~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~ 110 (269)
++.|+-.|... ++.|+.+||+ ..+++ .. .+.|=++.|...|+|+ .++++ +.+|+.|+.+...
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~d------rs-tvsrnl~~L~r~GlVe---~~~~D-l~LT~~G~~~l~~ 80 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDLG------NA-VVNSNIGVLIKKGLVE---KSGDG-LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTSC------HH-HHHHHHHHHHTTTSEE---EETTE-EEECHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhccc------HH-HHHHHHHHHHHCCCee---cCCCC-eeeCHhHHHHHHH
Confidence 34466667776 4899999999 99997 67 9999999999999998 33445 9999998765543
No 353
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.38 E-value=0.025 Score=42.38 Aligned_cols=66 Identities=6% Similarity=0.161 Sum_probs=48.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|...+ ++++|..+||+.++++ .. .+.++++.|...|+|...+...+ -.+.+|+.|+.+.
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSIK------SS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCCC------cc-hHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 445677777753 1279999999999998 66 99999999999999985421112 2477888776444
No 354
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=95.37 E-value=0.016 Score=51.88 Aligned_cols=64 Identities=13% Similarity=-0.103 Sum_probs=49.4
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC---------------------CCceEEecccCCc---
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY---------------------PGIDHVGGDLFES--- 248 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~---------------------~ri~~~~gD~~~~--- 248 (269)
..+|+|+|||+|..+..++++.|..+++..|+ |..++.++++ +.|+++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 46899999999999999999999889999997 6766655431 2388999998762
Q ss_pred CCCC-cEEEe
Q 024350 249 VPKA-DTIFM 257 (269)
Q Consensus 249 ~P~g-D~~~l 257 (269)
.+.. |++++
T Consensus 128 ~~~~fD~I~l 137 (378)
T 2dul_A 128 RHRYFHFIDL 137 (378)
T ss_dssp STTCEEEEEE
T ss_pred ccCCCCEEEe
Confidence 2333 88774
No 355
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.34 E-value=0.016 Score=41.40 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChh
Q 024350 30 MQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (269)
Q Consensus 30 L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~ 103 (269)
|..-.++.|+..|... ++.|+.|||+.+|++ .. .+.+.|+.|... ++........-.|++++.
T Consensus 24 L~~~~Rl~IL~~l~~~---~~~~~~ela~~l~is------~s-tvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~ 86 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKH---KALNVTQIIQILKLP------QS-TVSQHLCKMRGK-VLKRNRQGLEIYYSINNP 86 (99)
T ss_dssp HCSHHHHHHHHHHHHH---SCEEHHHHHHHHTCC------HH-HHHHHHHHHBTT-TBEEEEETTEEEEECCCH
T ss_pred hCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHH-hhhheEeCcEEEEEEChH
Confidence 3445566777555443 589999999999998 67 999999999999 987532211234777654
No 356
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.33 E-value=0.018 Score=43.19 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=49.9
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
.++.++..|...| ++++|..+||+.++++ .. .+.++++-|...|+|.+.....+ -.+.+|+.|+.+..
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQRT------GP-TVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 3455777777652 1489999999999998 67 99999999999999995421112 24778888775553
No 357
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.32 E-value=0.016 Score=44.72 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=48.0
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
+.++..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+..
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKID------KG-TTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 3456677665 589999999999998 67 99999999999999996421112 24778888875553
No 358
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.31 E-value=0.018 Score=44.44 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=49.0
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.......+ -.|.+|+.|+.+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVVE------QS-TLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345577888775 589999999999998 67 99999999999999985321111 2377888776544
No 359
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.31 E-value=0.032 Score=42.92 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=48.2
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
++.++-.|...+ ++.+..+||+.++++ .. .+.++++-|...|+|.+.+-..+. ...+|+.|+.+.
T Consensus 33 q~~vL~~L~~~~--~~~~~~eLa~~l~~~------~~-tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLP--PEQSQIQLAKAIGIE------QP-SLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSC--TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHCcC------HH-HHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 334566666554 468889999999998 67 999999999999999864322222 377888887555
No 360
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=95.30 E-value=0.025 Score=48.68 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCCccEEEEeCC------CchHHHHHHHHHCC-CCeEEEeehhHHHHhCCCCCCceE-EecccCC-cCCCC-cEEEec
Q 024350 191 FEHVKKLVDVGG------GLGATLNMIISKYP-HIKGINYDLLYVIKNAPSYPGIDH-VGGDLFE-SVPKA-DTIFMK 258 (269)
Q Consensus 191 ~~~~~~vvDvGG------G~G~~~~~l~~~~P-~l~~vv~Dlp~vv~~a~~~~ri~~-~~gD~~~-~~P~g-D~~~l~ 258 (269)
++...+|||||| |+|. ..+++..| +.+++.+|+-+. .++|++ +.+|+.+ +.+.. |+++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEc
Confidence 455679999999 5587 44566777 689999998443 257999 9999988 44444 998864
No 361
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.29 E-value=0.016 Score=43.89 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=51.0
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhcC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVRN 110 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~~ 110 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|+|...+...+ -.+.+|+.|+.+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYLD------SG-TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTCC------HH-HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------cC-cHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 345577777765 489999999999998 67 99999999999999985321111 237899988866544
No 362
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.25 E-value=0.11 Score=39.19 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=48.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|... +++|..+||+.++++ .. .+.++++-|...|+|.......+ -.+.+|+.|+.+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQMK------RQ-YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 44577777775 489999999999998 67 99999999999999995321111 2477888776544
No 363
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.24 E-value=0.017 Score=43.09 Aligned_cols=66 Identities=11% Similarity=0.185 Sum_probs=48.4
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|...+ ++++|..+||+.++++ .. .+.++++-|...|+|.+.+...+ -.+.+|+.|+.+.
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLNYK------QP-QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSSH------HH-HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 344666776641 1479999999999997 56 99999999999999985321222 3377888887554
No 364
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.20 E-value=0.083 Score=40.07 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=45.7
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce--eecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS--FVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~--~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..| .. +++|..+||+.++++ .. .+.++++.|...|+|... +...+ -.+.+|+.|+.+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGVN------KA-AVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCSC------SS-HHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 34477888 54 589999999999998 45 899999999999999951 01112 2367777776554
No 365
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.18 E-value=0.021 Score=43.12 Aligned_cols=64 Identities=16% Similarity=0.303 Sum_probs=45.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
.++.|+..|... + +|..+||+.++++ .. .+.++++.|...|+|.+.+...+ -.|.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~---~-~t~~eLa~~l~~s------~~-tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE---S-LTNSELARRLNVS------QA-AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC---C-CCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC---C-CCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 445567777663 4 9999999999998 67 99999999999999985321112 3477777766444
No 366
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.13 E-value=0.018 Score=40.54 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHH-HHHHHHHHHhcCcccceeecC-CCeEecChhchhhh
Q 024350 38 VFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMM-LDRVLRLLVSYNALHCSFVDG-QRLYSLAPVSKYFV 108 (269)
Q Consensus 38 lfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~-l~rlL~~L~~~g~l~~~~~~~-~~~y~~t~~s~~l~ 108 (269)
++..|...| .++|..+||+.++++ .. . +.++++.|...|+|...+.+. .-.+.+|+.|+.+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~is------~~-t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGVS------EK-TFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCCC------HH-HHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCCC------ch-HHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 455566643 379999999999998 56 8 999999999999998432221 23478888887554
No 367
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.11 E-value=0.032 Score=41.98 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=46.7
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
+.++..|... +++|..+||+.++++ .. .+.++++.|...|+|++.+...+ -.+.+|+.|+.+.
T Consensus 39 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 39 YIVLMAIEND---EKLNIKKLGERVFLD------SG-TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHSCTT---CEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 3455556554 589999999999998 67 99999999999999995421112 3578888887554
No 368
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.07 E-value=0.02 Score=40.37 Aligned_cols=51 Identities=6% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC-CCeEecChhchhhh
Q 024350 50 KLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLAPVSKYFV 108 (269)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~-~~~y~~t~~s~~l~ 108 (269)
++|..+||+.++++ .. .+.++++.|...|+|. .+.++ ...|.+|+.|+.+.
T Consensus 30 ~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSP------HS-YVWLIIKKFEEAKMVE-CELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEE-EEEETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcC------HH-HHHHHHHHHHHCcCcc-CCCCCCeEEEEEChhHHHHH
Confidence 49999999999998 56 9999999999999994 21221 13589999887654
No 369
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.05 E-value=0.024 Score=43.64 Aligned_cols=61 Identities=8% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 26 LPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 26 ~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
...+|++.+.+... . + ++.|.++||+.++++ +. .+.++|..|...|+|... + +.|.|.++.
T Consensus 13 ~~yAl~~L~~La~~----~-~--~~~~~~~iA~~~~i~------~~-~l~kil~~L~~~Glv~s~-r-G~GGy~L~~ 73 (149)
T 1ylf_A 13 FSIAVHILSILKNN----P-S--SLCTSDYMAESVNTN------PV-VIRKIMSYLKQAGFVYVN-R-GPGGAGLLK 73 (149)
T ss_dssp HHHHHHHHHHHHHS----C-G--GGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred HHHHHHHHHHHHhC----C-C--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEc-c-CCCceEeCC
Confidence 34466666655431 1 1 589999999999997 67 999999999999999853 2 367788765
No 370
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.99 E-value=0.058 Score=40.82 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=41.7
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.++..|...+ ++++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 43 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQ-ESGIIQKDLAQFFGRR------GA-SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHT-TTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 345677776642 1489999999999997 56 89999999999999985321112 2366777776544
No 371
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.97 E-value=0.049 Score=42.31 Aligned_cols=69 Identities=9% Similarity=0.140 Sum_probs=48.0
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhhcC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFVRN 110 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~~~ 110 (269)
.++.|+..|...| ++++|..+||+.++++ .. .+.++++.|...|+|.+.....+. .+.+|+.|+.+...
T Consensus 47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (168)
T 3u2r_A 47 QQYNTLRLLRSVH-PEGMATLQIADRLISR------AP-DITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKD 118 (168)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHC---------CT-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHH
Confidence 3455677777642 1489999999999997 45 899999999999999964221222 47888888765533
No 372
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=94.97 E-value=0.0097 Score=46.63 Aligned_cols=60 Identities=7% Similarity=-0.078 Sum_probs=45.3
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCCC--CCceEEecccCC-cC---CC-C-cEEEecccc
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPSY--PGIDHVGGDLFE-SV---PK-A-DTIFMKVIC 261 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~~--~ri~~~~gD~~~-~~---P~-g-D~~~l~~iL 261 (269)
.....+|+|||||. +.+|. +.+++.+++. .+++++.+|+.+ +. +. . |+++...+|
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 44568999999996 23775 6777766543 469999999987 44 54 4 999999999
Q ss_pred ccC-CC
Q 024350 262 VCY-LN 266 (269)
Q Consensus 262 hd~-~d 266 (269)
|.. +|
T Consensus 74 ~~~~~~ 79 (176)
T 2ld4_A 74 GSTTLH 79 (176)
T ss_dssp TCCCCC
T ss_pred hhcccC
Confidence 998 54
No 373
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.95 E-value=0.028 Score=41.25 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
-.++.|+..|.. ++.|..+||+.+|++ .. .+.+.|+.|...|++..
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~is------~s-tvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGME------QS-AVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSSC------HH-HHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 456777788877 479999999999998 67 99999999999999984
No 374
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.92 E-value=0.025 Score=40.24 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=39.5
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.++.|+..|... +++|..+||+.+|++ .. .+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDLS------AR-FVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEE
Confidence 345567777664 589999999999998 67 999999999999999953
No 375
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.89 E-value=0.023 Score=42.68 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=49.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVR 109 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~ 109 (269)
.++.++..|... +++|..+||+.++++ .. .+.++++.|...|++.......+ -.+.+|+.|+.+..
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELALD------TG-TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTCC------TT-THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 345677778775 489999999999998 56 89999999999999985421111 24778888775543
No 376
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.88 E-value=0.046 Score=42.01 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=45.2
Q ss_pred hHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 39 FEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 39 fd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
...|... ++.|..+||+.+|++ .. .+.+.|+.|...|+|.. .....+.+|+.|..+.
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~vs------~~-tvs~~l~~Le~~Glv~r---~~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLGVS------QP-TVAKMLKRLATMGLIEM---IPWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCEEE---ETTTEEEECHHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEE---ecCCceEEChhHHHHH
Confidence 3355553 479999999999998 67 99999999999999984 3345688998886554
No 377
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.87 E-value=0.046 Score=39.51 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=38.3
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
++.|+..+...| .++|..+||+.+|++ .. .+++.|..|...|+|..
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgvs------~~-tV~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNIK------VN-DVRKKLNLLEEQGFVSY 65 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTSC------HH-HHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 445677775443 479999999999998 67 99999999999999985
No 378
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.83 E-value=0.033 Score=42.43 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=50.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhhcCC
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFVRNN 111 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~~~~ 111 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+...-
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLYLD------SA-TLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 45577777765 589999999999998 67 99999999999999995321111 2488999988666443
No 379
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.82 E-value=0.031 Score=43.01 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=47.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.|.+|+.|+.+.
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAMD------KV-AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 44577778765 589999999999998 67 99999999999999985311111 3477787776544
No 380
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.77 E-value=0.032 Score=43.73 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
+++|.++||+.++++ +. .+.++|..|...|+|+.. +...|-|.++.
T Consensus 27 ~~~s~~~IA~~~~is------~~-~l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (162)
T 3k69_A 27 SKVASRELAQSLHLN------PV-MIRNILSVLHKHGYLTGT-VGKNGGYQLDL 72 (162)
T ss_dssp SCBCHHHHHHHHTSC------GG-GTHHHHHHHHHTTSSEEE-CSTTCEEECCS
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEee-cCCCCCeEecC
Confidence 589999999999997 66 999999999999999854 22246798865
No 381
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.71 E-value=0.099 Score=41.58 Aligned_cols=71 Identities=7% Similarity=0.008 Sum_probs=53.0
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
...++.++..|...+ ++++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGTS------KQ-NINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 344566777887521 1589999999999998 66 99999999999999996421112 3488999998665
Q ss_pred cC
Q 024350 109 RN 110 (269)
Q Consensus 109 ~~ 110 (269)
..
T Consensus 112 ~~ 113 (189)
T 3nqo_A 112 VT 113 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 382
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=94.62 E-value=0.019 Score=51.67 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=51.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCC-CeEEEeeh-hHHHHhCCCC-------CC-ceEEecccCCcC----CCC-cEEEe
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPH-IKGINYDL-LYVIKNAPSY-------PG-IDHVGGDLFESV----PKA-DTIFM 257 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~vv~Dl-p~vv~~a~~~-------~r-i~~~~gD~~~~~----P~g-D~~~l 257 (269)
...+|||+++|+|.+++.++++.++ -+++..|+ |..++.++++ ++ ++++.+|.++-+ +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 3478999999999999999998776 46889997 7777766542 45 999999987622 333 88876
Q ss_pred c
Q 024350 258 K 258 (269)
Q Consensus 258 ~ 258 (269)
-
T Consensus 132 D 132 (392)
T 3axs_A 132 D 132 (392)
T ss_dssp C
T ss_pred C
Confidence 3
No 383
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.58 E-value=0.025 Score=42.08 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=39.8
Q ss_pred hcChhHHHHhcCCCCC-CCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 35 ELDVFEIITKAGPGAK-LSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~-~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
+..|+..|...+ ++ +|+.|||+.++++ .. .+.|.|+.|...|+|.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~s------~s-TV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKLD------VS-TVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEee
Confidence 455777787754 46 9999999999998 67 999999999999999853
No 384
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.48 E-value=0.064 Score=38.18 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceee-cCCCeEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~-~~~~~y~~t~~s~~l~ 108 (269)
++.+..+||+.++++ .. .|.|+|..|...|+|..... ++-+...+|+.|+.+.
T Consensus 35 ~~~s~~eLa~~l~l~------~s-tLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQLP------MS-VLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCc------hh-hHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 689999999999998 67 99999999999999985422 1224567888877543
No 385
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.48 E-value=0.047 Score=44.37 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=49.5
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeec-----CCCeEecCh
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLAP 102 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-----~~~~y~~t~ 102 (269)
.+|..-.++.|+..|.. +++|..+||+.+|++ .. .+.+.|+.|...|+|...... ..-.|++|+
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is------~s-tvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~ 78 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGVG------QK-AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKK 78 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECT
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEeeccCCCCceEEEEECh
Confidence 44445566677777865 699999999999998 67 999999999999999864221 112477776
Q ss_pred hch
Q 024350 103 VSK 105 (269)
Q Consensus 103 ~s~ 105 (269)
.+.
T Consensus 79 ~~~ 81 (202)
T 2p4w_A 79 GLR 81 (202)
T ss_dssp TEE
T ss_pred HHH
Confidence 544
No 386
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=94.38 E-value=0.078 Score=44.14 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=51.9
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhC----CC--CCCceEEec-ccCCcCCC-C
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNA----PS--YPGIDHVGG-DLFESVPK-A 252 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a----~~--~~ri~~~~g-D~~~~~P~-g 252 (269)
...+.+.+. +....+||||||++|.++.-++....--+++.+|+-..--.- +. ..-|+|..+ |+|.--|. .
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 345556664 666679999999999999977777666678899973222111 11 167999999 98763333 4
Q ss_pred cEEEe
Q 024350 253 DTIFM 257 (269)
Q Consensus 253 D~~~l 257 (269)
|+++.
T Consensus 146 Dtllc 150 (267)
T 3p8z_A 146 DTLLC 150 (267)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87764
No 387
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=94.34 E-value=0.027 Score=50.24 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=44.2
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC--------------CCCceEEecccCC
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS--------------YPGIDHVGGDLFE 247 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~--------------~~ri~~~~gD~~~ 247 (269)
.+++||=||||.|..++++++ +|.-+.+++|+ |.|++.+++ .+|++++.+|-++
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~ 273 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 273 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence 468999999999999999997 45578999998 788877653 1578999998775
No 388
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.19 E-value=0.092 Score=40.56 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=51.0
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHhcCcccceeec----CCC----eEecChhc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD----GQR----LYSLAPVS 104 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~-~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~----~~~----~y~~t~~s 104 (269)
.++.|+..|-..+ .+..|+++|++.++ ++ .. .++|.|+.|+..|+|.+.... +.| .|.+|+.|
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~lS------~a-TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~G 101 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDET------EA-NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEG 101 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCCC------HH-HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHH
Confidence 5566777776642 14689999999999 87 66 999999999999999853111 112 69999999
Q ss_pred hhhhcC
Q 024350 105 KYFVRN 110 (269)
Q Consensus 105 ~~l~~~ 110 (269)
+.+...
T Consensus 102 r~~l~~ 107 (151)
T 3u1d_A 102 IALLRA 107 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 855433
No 389
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.07 E-value=0.051 Score=41.59 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 25 VLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 25 ~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
....+|++.+.+ +..+ ++ |.++||+.++++ +. .+.++|..|...|+|... + +.|-|.++.
T Consensus 7 ~~~yAl~~L~~L------a~~~--~~-s~~~IA~~~~i~------~~-~l~kIl~~L~~aGlv~s~-r-G~GGy~Lar 66 (145)
T 1xd7_A 7 RLAVAIHILSLI------SMDE--KT-SSEIIADSVNTN------PV-VVRRMISLLKKADILTSR-A-GVPGASLKK 66 (145)
T ss_dssp HHHHHHHHHHHH------HTCS--CC-CHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEECC-S-SSSSCEESS
T ss_pred HHHHHHHHHHHH------HhCC--CC-CHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEee-c-CCCCceecC
Confidence 344555555544 3322 35 999999999997 67 999999999999999854 2 256687754
No 390
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.96 E-value=0.077 Score=43.40 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=44.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhc
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVR 109 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~ 109 (269)
++++..+||+.++++ .. .+.+.++-|...|+|.+ .....+.+|+.|+.+..
T Consensus 19 ~~~~~~~lA~~l~vs------~~-tvs~~l~~Le~~GlV~r---~~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 19 NKITNKEIAQLMQVS------PP-AVTEMMKKLLAEELLIK---DKKAGYLLTDLGLKLVS 69 (214)
T ss_dssp SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---ETTTEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEE---ecCCCeEECHHHHHHHH
Confidence 689999999999998 67 99999999999999994 33578999999986553
No 391
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.96 E-value=0.025 Score=44.73 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.|+..|...+..+++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAIS------GP-STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCC------SG-GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45577788775410139999999999997 45 89999999999999985311111 2377887776544
No 392
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.84 E-value=0.061 Score=43.66 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=48.8
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
++.|+..|... +++|..+||+.++++ .. .+.++++.|...|+|.+.....+ -.+.+|+.|+.+.
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i~------~s-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 34567777765 489999999999998 66 99999999999999995321111 2578999887655
No 393
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.77 E-value=0.024 Score=47.18 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecC------CCeEec
Q 024350 27 PAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG------QRLYSL 100 (269)
Q Consensus 27 ~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~------~~~y~~ 100 (269)
..+|..-.++.|+..|.. +++|+.+||+.+|++ .. .+.+.|+.|...|+|....+.+ .-.|++
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lglS------~s-tVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~L 74 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSVS------ST-AVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKI 74 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCCC------HH-HHHHHHHHHHHTTSEEEEEECC-----CEEEEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEE
Confidence 345555567778888875 599999999999998 67 9999999999999999521211 124888
Q ss_pred Chhch
Q 024350 101 APVSK 105 (269)
Q Consensus 101 t~~s~ 105 (269)
|+.+.
T Consensus 75 t~~~~ 79 (232)
T 2qlz_A 75 SIAKS 79 (232)
T ss_dssp CCCEE
T ss_pred ccchh
Confidence 77654
No 394
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.70 E-value=0.041 Score=42.02 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=41.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
+++|..+||+.++++ .. .+.++++-|...|+|++.+-..+. ...+|+.|+.+.
T Consensus 50 ~~~t~~eLa~~l~~~------~~-tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMVH------PT-SVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 589999999999998 67 999999999999999964222222 377888886554
No 395
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.58 E-value=0.054 Score=36.93 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=38.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~----~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.+..|+..|... +++|..||++.++ ++ .. .+.++|+.|...|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s------~~-Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWS------PK-TIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCcc------HH-HHHHHHHHHHHCCCeEEE
Confidence 345677777764 5899999999997 44 56 899999999999999964
No 396
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=93.49 E-value=0.035 Score=46.75 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=43.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHH--CCCCeE--EEeehhHHHHhCCCC-CCceEE---ec-ccCCcCCC-
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISK--YPHIKG--INYDLLYVIKNAPSY-PGIDHV---GG-DLFESVPK- 251 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~--vv~Dlp~vv~~a~~~-~ri~~~---~g-D~~~~~P~- 251 (269)
..+-+.+ -++...+|||+||+.|.++.-.++. -..+++ +..|+| +...... +.++++ .| ||++..|.
T Consensus 63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 3444554 3667789999999999999988875 222234 334541 1111111 555444 36 99984443
Q ss_pred CcEEEe
Q 024350 252 ADTIFM 257 (269)
Q Consensus 252 gD~~~l 257 (269)
.|+++.
T Consensus 140 ~DvVLS 145 (269)
T 2px2_A 140 SDTLLC 145 (269)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 488763
No 397
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.15 E-value=0.23 Score=43.81 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred ccEEEEeCCCchHHHHHHHHHCCCCeEEEeehh-HHHHhC---CCCCCceEEecccCC
Q 024350 194 VKKLVDVGGGLGATLNMIISKYPHIKGINYDLL-YVIKNA---PSYPGIDHVGGDLFE 247 (269)
Q Consensus 194 ~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp-~vv~~a---~~~~ri~~~~gD~~~ 247 (269)
...||+||.|.|.+...|+++...-+.+++++. .-++.. ...++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 478999999999999999997544467777752 222211 135899999999976
No 398
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=93.06 E-value=0.097 Score=45.90 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=58.5
Q ss_pred CccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHhCCC---------------------------CCCceEEeccc
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKNAPS---------------------------YPGIDHVGGDL 245 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~a~~---------------------------~~ri~~~~gD~ 245 (269)
+...||.+|||..+..-++...+|+++.+=+|+|.|++.-++ .+++++++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 458999999999999999999999999999999999864221 16899999999
Q ss_pred CC-cC---------C-CC-cEEEeccccccCCCC
Q 024350 246 FE-SV---------P-KA-DTIFMKVICVCYLNS 267 (269)
Q Consensus 246 ~~-~~---------P-~g-D~~~l~~iLhd~~d~ 267 (269)
.+ ++ . .. .+++.--+|++.+.+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~ 210 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNN 210 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHH
Confidence 97 33 1 22 566676777776643
No 399
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=93.04 E-value=0.056 Score=39.65 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=44.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCe---EecChhchhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRL---YSLAPVSKYF 107 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~----~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~---y~~t~~s~~l 107 (269)
++.|+..|... +++|..+||+.++ ++ .. .+.++|+-|...|+|.+.. + +.+ +.+|+.|+.+
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~s------~~-tv~~~l~~L~~~Glv~r~~-~-~rr~~~~~lT~~g~~~ 79 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDWS------PK-TIRTLITRLYKKGFIDRKK-D-NKIFQYYSLVEESDIK 79 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCCC------HH-HHHHHHHHHHHHTSEEEEE-E-TTEEEEEESSCHHHHH
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCCc------Hh-hHHHHHHHHHHCCCeEEEe-c-CCeEEEEEecCHHHHH
Confidence 34456666654 5899999999999 65 56 8999999999999999642 2 232 3466666544
Q ss_pred h
Q 024350 108 V 108 (269)
Q Consensus 108 ~ 108 (269)
.
T Consensus 80 ~ 80 (123)
T 1okr_A 80 Y 80 (123)
T ss_dssp H
T ss_pred H
Confidence 3
No 400
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=92.99 E-value=0.11 Score=45.94 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=50.9
Q ss_pred CCccEEEEeCCCchHHHHH--------HHHH--------CCCCeEEEeehhH-----HHHhCCCC---CC---ceEEecc
Q 024350 192 EHVKKLVDVGGGLGATLNM--------IISK--------YPHIKGINYDLLY-----VIKNAPSY---PG---IDHVGGD 244 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~--------l~~~--------~P~l~~vv~Dlp~-----vv~~a~~~---~r---i~~~~gD 244 (269)
++.-+|+|+||++|..+.. +.++ .|.++++.-|+|. +....... .+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 4567899999999954433 3322 5778888889873 22222210 12 5567899
Q ss_pred cCC-cCCCC--cEEEeccccccCCC
Q 024350 245 LFE-SVPKA--DTIFMKVICVCYLN 266 (269)
Q Consensus 245 ~~~-~~P~g--D~~~l~~iLhd~~d 266 (269)
|+. .+|.. |+++-+..||=.++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~ 154 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred hhhccCCCCceEEEEehhhhhhccc
Confidence 999 78964 99999999995443
No 401
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.91 E-value=0.095 Score=40.00 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=39.8
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.++.|+..|... +++|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRIP------KA-TLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEE
Confidence 456678888775 589999999999998 67 9999999999999998
No 402
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.77 E-value=0.12 Score=39.33 Aligned_cols=45 Identities=24% Similarity=0.463 Sum_probs=39.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|++.|... ++.|..|||+.+|++ +. .+.+.++.|...|++.
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKLS------PP-SVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence 345678888875 589999999999998 67 9999999999999998
No 403
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.77 E-value=0.13 Score=43.16 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=48.8
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
++.++..|...+ ++++|..+||+.++++ .. .+.++++-|...|+|.+.+-..+. ...+|+.|+.+.
T Consensus 160 q~~vL~~L~~~~-~~~~t~~eLa~~l~i~------~~-tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQN-KNIVLLKDLIETIHHK------YP-QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTT-TCCEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 345677777653 1259999999999998 67 999999999999999964222222 367888887554
No 404
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.74 E-value=0.12 Score=39.57 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=39.5
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... +++|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGLS------VS-AVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE
Confidence 355678888775 589999999999998 67 9999999999999997
No 405
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.67 E-value=0.099 Score=37.36 Aligned_cols=50 Identities=32% Similarity=0.304 Sum_probs=38.5
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
++.|+..|-+. +++|..||++.++.++ +.... .+.++|+-|...|+|.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~--~~s~s-TVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQEL--EWSLA-TVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGG--CCCHH-HHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhccc--CCCHh-hHHHHHHHHHHCCCEEEE
Confidence 45678888765 5899999999998520 00045 899999999999999953
No 406
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=92.56 E-value=0.076 Score=49.77 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=46.1
Q ss_pred cEEEEeCCCchHHHHHHHHHCC---------------CCeEEEeeh-hHHHHhCCCC-------CCceEEecccCC-c-C
Q 024350 195 KKLVDVGGGLGATLNMIISKYP---------------HIKGINYDL-LYVIKNAPSY-------PGIDHVGGDLFE-S-V 249 (269)
Q Consensus 195 ~~vvDvGGG~G~~~~~l~~~~P---------------~l~~vv~Dl-p~vv~~a~~~-------~ri~~~~gD~~~-~-~ 249 (269)
.+|+|.+||+|.++.++.+..+ +.+..++|+ |.++..++.+ .+|.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999998865433 567899997 6777666531 346668899887 3 2
Q ss_pred CC-C-cEEEec
Q 024350 250 PK-A-DTIFMK 258 (269)
Q Consensus 250 P~-g-D~~~l~ 258 (269)
+. . |+++..
T Consensus 326 ~~~~fD~Iv~N 336 (544)
T 3khk_A 326 PDLRADFVMTN 336 (544)
T ss_dssp TTCCEEEEEEC
T ss_pred ccccccEEEEC
Confidence 32 3 888763
No 407
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=92.50 E-value=0.12 Score=44.07 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL 225 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl 225 (269)
...+.+.+- +....+|||||||.|.++.-+++..|-..++.+|+
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 344555564 66667999999999999999888777656666665
No 408
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.48 E-value=0.13 Score=39.89 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=39.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... +++|..|||+.+|++ +. .+.+.++.|...|++.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVALS------PS-PCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEe
Confidence 355678888875 589999999999998 67 9999999999999998
No 409
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.46 E-value=0.21 Score=37.40 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-CCCeEec
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSL 100 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~~~y~~ 100 (269)
+.-+.-|++.|...+ ++.|++||.+.+ +++ .. .+.|.|+.|+..|+|.+.... +..+|..
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~is------~~-TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGENIG------LT-TVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 445667888997654 689999999998 676 56 899999999999999854211 2245654
No 410
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.45 E-value=0.12 Score=39.52 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=39.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... ++.|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCSC------HH-HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence 355678888875 589999999999998 67 9999999999999998
No 411
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.38 E-value=0.15 Score=38.88 Aligned_cols=45 Identities=13% Similarity=0.324 Sum_probs=39.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... ++.|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNTT------RQ-RIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTSC------HH-HHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE
Confidence 455688888875 589999999999998 67 9999999999999998
No 412
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=92.10 E-value=0.14 Score=39.22 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=39.6
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... ++.|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGVS------PE-TIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHcCCcc
Confidence 345678888875 589999999999998 67 9999999999999998
No 413
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.10 E-value=0.27 Score=35.98 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=49.6
Q ss_pred HHHHHhcChhHHHHhcCCCCCCCHHHHHHhCC--------CCCCCchhH-HHHHHHHHHHHHhcCcccceeecCC----C
Q 024350 30 MQAVVELDVFEIITKAGPGAKLSVSEIVAQIP--------LKDNNPEAA-AMMLDRVLRLLVSYNALHCSFVDGQ----R 96 (269)
Q Consensus 30 L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~--------~~~~~~~~~-~~~l~rlL~~L~~~g~l~~~~~~~~----~ 96 (269)
+.-..++-|+..|.. +|.+..+|++.+. ++ + . .+.+.|+-|...|+|+....... -
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is------~~~-tly~~L~~Le~~GlI~~~~~~~~~~~r~ 78 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIG------HMG-NIYRVLADLEESGFLSTEWDTTVSPPRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCC------CCC-CHHHHHHHHHHTTSEEEEEECSSSSCEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCC------Ccc-hHHHHHHHHHHCCCeEEEeecCCCCCce
Confidence 334456667777876 5899999999883 55 4 5 89999999999999986422111 2
Q ss_pred eEecChhchhhh
Q 024350 97 LYSLAPVSKYFV 108 (269)
Q Consensus 97 ~y~~t~~s~~l~ 108 (269)
.|++|+.|+.+.
T Consensus 79 ~Y~LT~~G~~~l 90 (118)
T 2esh_A 79 IYRITPQGKLYL 90 (118)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEEChHHHHHH
Confidence 589999987554
No 414
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.08 E-value=0.16 Score=40.00 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=40.8
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
..+..|+..|... +++|..|||+.+|++ +. .+.+.|+.|...|++.
T Consensus 27 ~~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~-tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence 3566788899886 589999999999998 67 9999999999999998
No 415
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=92.06 E-value=0.25 Score=35.60 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHh----CCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC----eEecChhc
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQ----IPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR----LYSLAPVS 104 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~----~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~----~y~~t~~s 104 (269)
..++-|+..|.. +|.+--+|++. ++++ +. .+.++|+-|...|+|+......++ .|++|+.|
T Consensus 9 ~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i~------~~-tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G 77 (108)
T 3l7w_A 9 LIEYLILAIVSK----HDSYGYDISQTIKLIASIK------ES-TLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHH
T ss_pred HHHHHHHHHHHc----CCCcHHHHHHHHHHHhCCC------cC-hHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHH
Confidence 345556677776 58888887777 4776 67 999999999999999864221122 38999988
Q ss_pred hhhh
Q 024350 105 KYFV 108 (269)
Q Consensus 105 ~~l~ 108 (269)
+...
T Consensus 78 ~~~l 81 (108)
T 3l7w_A 78 EKHL 81 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 416
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=92.03 E-value=0.11 Score=48.51 Aligned_cols=74 Identities=14% Similarity=-0.008 Sum_probs=50.6
Q ss_pred HHHhccCCCCccEEEEeCCCchHHHHHHHHHCC------------------CCeEEEeeh-hHHHHhCCC------CCC-
Q 024350 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYP------------------HIKGINYDL-LYVIKNAPS------YPG- 237 (269)
Q Consensus 184 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P------------------~l~~vv~Dl-p~vv~~a~~------~~r- 237 (269)
+++... .....+|+|.+||+|.++..+.+... ..+++++|+ |.+++.++. .+.
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 344444 33456899999999999988876532 246899997 666666543 132
Q ss_pred ----ceEEecccCC-c-CC-CC-cEEEec
Q 024350 238 ----IDHVGGDLFE-S-VP-KA-DTIFMK 258 (269)
Q Consensus 238 ----i~~~~gD~~~-~-~P-~g-D~~~l~ 258 (269)
+.+..+|.+. + .+ .. |+++..
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N 268 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATN 268 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred ccccCCeEeCCCcccccccccCCeEEEEC
Confidence 7899999988 3 22 23 888764
No 417
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=92.01 E-value=0.082 Score=49.49 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=49.8
Q ss_pred CccEEEEeCCCchHHHHHHHHHC---CCCeEEEeeh-hHHHHhCCCC--------CCceEEecccCC-cCC---C-C-cE
Q 024350 193 HVKKLVDVGGGLGATLNMIISKY---PHIKGINYDL-LYVIKNAPSY--------PGIDHVGGDLFE-SVP---K-A-DT 254 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~---P~l~~vv~Dl-p~vv~~a~~~--------~ri~~~~gD~~~-~~P---~-g-D~ 254 (269)
...+|+|.+||+|.++.++.+.. +..+..++|+ |.++..++.+ +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 34699999999999999999885 4678899997 6666665431 467899999998 344 2 3 88
Q ss_pred EEec
Q 024350 255 IFMK 258 (269)
Q Consensus 255 ~~l~ 258 (269)
++..
T Consensus 301 IvaN 304 (542)
T 3lkd_A 301 VLMN 304 (542)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8753
No 418
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.98 E-value=0.14 Score=39.71 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=40.1
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|++.|.++ +++|..+||+.+|++ +. .+.+-++.|...|++.
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~s------~~-tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGLS------TT-PCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence 456688889876 599999999999998 77 9999999999999998
No 419
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=91.97 E-value=0.15 Score=49.86 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=45.9
Q ss_pred CCccEEEEeCCCchHHHHHHHHHCCC---CeEEEeeh-hHHHHhC--C----C------CCCceEEecccCCc--CC-CC
Q 024350 192 EHVKKLVDVGGGLGATLNMIISKYPH---IKGINYDL-LYVIKNA--P----S------YPGIDHVGGDLFES--VP-KA 252 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~~~~P~---l~~vv~Dl-p~vv~~a--~----~------~~ri~~~~gD~~~~--~P-~g 252 (269)
....+|+|.|||+|.++.+++++.++ .+.+++|+ |..++.+ + . .+.+.+...|++.+ .+ ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 34579999999999999999998873 57899997 5566555 1 1 12345666777762 22 23
Q ss_pred -cEEEe
Q 024350 253 -DTIFM 257 (269)
Q Consensus 253 -D~~~l 257 (269)
|+++.
T Consensus 400 FDVVIg 405 (878)
T 3s1s_A 400 VSVVVM 405 (878)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 87765
No 420
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.96 E-value=0.17 Score=40.67 Aligned_cols=52 Identities=6% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.++....+..|+..|.. +++|..+||+.+|++ +. .+.+.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lglS------~s-tv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN----KEMTISQLSEILGKT------PQ-TIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 34445567778888874 589999999999998 67 999999999999999854
No 421
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=91.90 E-value=0.46 Score=34.82 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-C----CCe
Q 024350 29 AMQAVVELDVFEIITKAGPGAKLSVSEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-G----QRL 97 (269)
Q Consensus 29 ~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~----~~~ 97 (269)
.++-.+++=|+..|.. +|.+--+|++.+ +++ +. .+...|+-|...|+|+..... + .-.
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~ 75 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEVV------EG-TVYTILVRLEKKKLVNIEKKPSDMGPPRKF 75 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTCC------HH-HHHHHHHHHHHTTCEEEEEEC-----CEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeecCCCCCCceE
Confidence 3444455556667776 699999999987 676 66 999999999999999864211 1 124
Q ss_pred EecChhchhhh
Q 024350 98 YSLAPVSKYFV 108 (269)
Q Consensus 98 y~~t~~s~~l~ 108 (269)
|++|+.|+...
T Consensus 76 Y~LT~~G~~~l 86 (117)
T 4esf_A 76 YSLNEAGRQEL 86 (117)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99999887544
No 422
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=91.86 E-value=0.13 Score=39.15 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=39.6
Q ss_pred cChhHHHHhcC--CCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 36 LDVFEIITKAG--PGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 36 lglfd~L~~~g--~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
+.++..|...+ .++++|..+||+.++++ .. .+.++++-|...|+|... .+.+. ...+|+.|+.+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~------~~-tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGVE------RT-TLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHH
Confidence 34455565431 01469999999999998 66 999999999999999531 11122 356777666444
No 423
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.78 E-value=0.17 Score=39.74 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=39.9
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
.+..|+..|... +++|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~-tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKKP------ES-TIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEE
Confidence 455688888875 589999999999998 67 9999999999999997
No 424
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.75 E-value=0.17 Score=38.06 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=38.3
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
+..|...|... +++|..+||+.+|++ +. .+.+.|+.|...|++.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGIS------ET-AVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEe
Confidence 45577788764 589999999999998 67 9999999999999998
No 425
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.69 E-value=0.22 Score=37.20 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 50 KLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
..|..+||+.+|++ +. .+.+.++.|...|++..
T Consensus 51 ~ps~~~LA~~l~~s------~~-~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 51 FPTPAELAERMTVS------AA-ECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp SCCHHHHHHTSSSC------HH-HHHHHHHHHHHTTSSEE
T ss_pred CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 37999999999998 67 99999999999999994
No 426
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.61 E-value=0.31 Score=37.12 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=44.2
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-CCCeEecC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSLA 101 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~~~y~~t 101 (269)
-+.-|++.|...+ ++.|++||.+.+ +++ .. .+.|.|+.|+..|+|.+.... +..+|.++
T Consensus 23 qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 23 QRHAILEYLVNSM--AHPTADDIYKALEGKFPNMS------VA-TVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTCC------HH-HHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------hh-hHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 3455889997754 689999999998 565 56 899999999999999854211 12457654
No 427
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.58 E-value=0.2 Score=41.20 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=43.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcC
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRN 110 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~ 110 (269)
+++|..++|+.++++ .. .+.+.++.|...|+|.+........+.+|+.|+.+...
T Consensus 26 ~~~s~s~aA~~L~is------q~-avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 26 AYLTSSKLADMLGIS------QQ-SASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp EECCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHH
Confidence 368999999999998 67 99999999999999995311124568899998866643
No 428
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.43 E-value=0.18 Score=37.77 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=36.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 37 DVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 37 glfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.++..|.... +++|..+||+.+|++ .. .+.++|+.|...|+|...
T Consensus 30 ~il~~L~~~~--~~~t~~ela~~l~~~------~s-tvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSD--KPLTISDIMEELKIS------KG-NVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCS--SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 3556664222 589999999999998 67 999999999999999953
No 429
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.33 E-value=0.14 Score=36.14 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
+++|..|||+.+|++ .. .+.++|+.|...|++..
T Consensus 35 ~~~t~~ela~~l~is------~~-tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 35 KPITSEELADIFKLS------KT-TVENSLKKLIELGLVVR 68 (109)
T ss_dssp SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEe
Confidence 589999999999998 67 99999999999999995
No 430
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.24 E-value=0.66 Score=31.18 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=36.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
+..|+.+||.++|++ -. -+.|+|.-|...|.|...+. .+-.|..+.
T Consensus 28 ~~~Ta~~IAkkLg~s------K~-~vNr~LY~L~kkG~V~~~~~-~PP~W~~~~ 73 (75)
T 1sfu_A 28 DYTTAISLSNRLKIN------KK-KINQQLYKLQKEDTVKMVPS-NPPKWFKNY 73 (75)
T ss_dssp CEECHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEECC-SSCEEEECT
T ss_pred cchHHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEecCCC-CCCCccCCC
Confidence 459999999999997 35 89999999999999986432 356666553
No 431
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.99 E-value=0.1 Score=41.48 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHhcCcccceeec--C---CCeEec
Q 024350 27 PAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G---QRLYSL 100 (269)
Q Consensus 27 ~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~-~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~--~---~~~y~~ 100 (269)
..+|..-+++.|+..|.. ++.|+.+||+.++ ++ .. .+.+.|+.|...|+|+...+. . .-.|++
T Consensus 17 ~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~~------~~-~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~ 85 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG----RSLTTRELAELLPDVA------TT-TLYRQVGILVKAGVLMVTAEHQVRGAVERTYTL 85 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTBC------HH-HHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCeEEEEeecccCcceeEEEe
Confidence 445556678889999976 6999999999996 76 56 899999999999999743221 1 134888
Q ss_pred Chhchhh
Q 024350 101 APVSKYF 107 (269)
Q Consensus 101 t~~s~~l 107 (269)
++.+..+
T Consensus 86 ~~~~~~~ 92 (182)
T 4g6q_A 86 NTQAGDA 92 (182)
T ss_dssp CTTTTTS
T ss_pred ccccccC
Confidence 7765443
No 432
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=90.99 E-value=0.22 Score=42.31 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh
Q 024350 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL 225 (269)
Q Consensus 183 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl 225 (269)
.+.+..- ++...+|||||||.|.++.-+++..+--+++.+|+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV 106 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL 106 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence 3444433 55667999999999999998888766544444443
No 433
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=90.91 E-value=0.22 Score=33.73 Aligned_cols=42 Identities=5% Similarity=0.078 Sum_probs=36.0
Q ss_pred CCCCHHHHHHhCCC-CCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKLSVSEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~s~~eLA~~~~~-~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
+.+++.++|+.+++ . -+ ++..++.+|.++|++++ .+.+.|.-
T Consensus 29 ~~i~l~~aa~~L~v~~------kR-RiYDI~NVLe~igli~K---~~k~~~~W 71 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQ------KR-RIYDITNVLEGIGLIEK---KSKNSIQW 71 (76)
T ss_dssp TEEEHHHHHHHTTTCC------TH-HHHHHHHHHHHHTSEEE---EETTEEEE
T ss_pred CcCcHHHHHHHhCCcc------ce-ehhhHHHHHhHhcceee---cCCCcEEE
Confidence 68999999999999 6 57 99999999999999994 34566664
No 434
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=90.66 E-value=0.26 Score=34.52 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=38.7
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
++.|+..|..+|. ..++..+||+.++++ .. .+.++|+.|...|++.+
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~------~~-tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNLP------LT-EINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 3456777876432 379999999999998 56 89999999999999983
No 435
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.54 E-value=0.35 Score=36.53 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
...|.++||+.+|++ +. -+.++|..|...|++..
T Consensus 50 ~~ps~~~LA~~~~~s------~~-~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSIS------VE-ECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSC------HH-HHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 468999999999998 67 99999999999999995
No 436
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=90.50 E-value=0.23 Score=45.25 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=47.7
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC---CeEecChhchhhh
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSKYFV 108 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~---~~y~~t~~s~~l~ 108 (269)
..|+..|.+.+ ++++|..+||+.++++ .. .+.|+++-|...|+|.+.+-..+ -...+|+.|+.+.
T Consensus 407 ~~vl~~l~~~~-~~~~~~~~l~~~~~~~------~~-~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 407 IYILNHILRSE-SNEISSKEIAKCSEFK------PY-YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHTCS-CSEEEHHHHHHSSCCC------HH-HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 34666776641 1479999999999998 67 99999999999999996421222 2366777776544
No 437
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.46 E-value=0.25 Score=40.70 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=40.2
Q ss_pred CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhc
Q 024350 52 SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVR 109 (269)
Q Consensus 52 s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~ 109 (269)
+..+||+.++++ .. .+.++|+-|...|++++ .....+.+|+.|+.+..
T Consensus 26 ~~~~La~~l~vs------~~-tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQS------GP-TVSQTVSRMERDGLLRV---AGDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---CTTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---eCCccEEECHHHHHHHH
Confidence 449999999998 66 89999999999999994 33467999999986653
No 438
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=90.14 E-value=0.42 Score=41.04 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeehhHHHHh----CCCC--CCceEEec-ccCCcCCC-Cc
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDLLYVIKN----APSY--PGIDHVGG-DLFESVPK-AD 253 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dlp~vv~~----a~~~--~ri~~~~g-D~~~~~P~-gD 253 (269)
..+.+.+. +.....||||||++|.++.-++....--++..+|+-..--. .+.. .-|+++.+ |++.--|. .|
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D 162 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCD 162 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCS
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCC
Confidence 34455555 55567999999999999997776665557888997332111 1111 34888888 87663232 47
Q ss_pred EEEe
Q 024350 254 TIFM 257 (269)
Q Consensus 254 ~~~l 257 (269)
++++
T Consensus 163 ~ivc 166 (321)
T 3lkz_A 163 TLLC 166 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 439
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.11 E-value=0.9 Score=33.11 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=50.2
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-CC---
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQ--- 95 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~--------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~--- 95 (269)
+.++-..++=|...|.. +|.+--+|.+.+ +++ +. .+.++|+-|...|+|+..... ..
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i~------~g-tly~~L~rLe~~GlI~~~~~~~~~~~~ 75 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMELN------EA-TLYTIFKRLEKDGIISSYWGDESQGGR 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCCC------HH-HHHHHHHHHHHTTSEEEEEEC----CC
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCCC------cc-hHHHHHHHHHHCCCEEEEeeccCCCCC
Confidence 34444556666777777 689999999887 565 56 999999999999999854211 11
Q ss_pred -CeEecChhchhhh
Q 024350 96 -RLYSLAPVSKYFV 108 (269)
Q Consensus 96 -~~y~~t~~s~~l~ 108 (269)
-.|++|+.|+...
T Consensus 76 rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 76 RKYYRLTEIGHENM 89 (116)
T ss_dssp EEEEEECHHHHHHH
T ss_pred ceEEEECHHHHHHH
Confidence 2499999887544
No 440
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.08 E-value=1.2 Score=39.67 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHH---C----CCCeEEEeehhHHH
Q 024350 163 SSFNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK---Y----PHIKGINYDLLYVI 229 (269)
Q Consensus 163 p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~---~----P~l~~vv~Dlp~vv 229 (269)
|+....|-+.++.+... .| .... .+..-.||++|+|+|.++.-+++. . ..++.+++|..+..
T Consensus 55 peis~~FGe~la~~~~~---~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 55 PEISQMFGELLGLWSAS---VW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHCHHHHHHHHHHHHH---HH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CchHHHHHHHHHHHHHH---HH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 56666776666554322 12 2222 345568999999999999888765 2 34578889874444
No 441
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=89.98 E-value=0.41 Score=38.03 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=46.3
Q ss_pred HHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCc-ccceeecCCCeEecChhc
Q 024350 33 VVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA-LHCSFVDGQRLYSLAPVS 104 (269)
Q Consensus 33 a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~-l~~~~~~~~~~y~~t~~s 104 (269)
-....|.+.|...+ +++|..+||+.+|++ .+ .++|-++.|...|+ +. .. .+.|.+++..
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~vS------~~-Ti~rdi~~L~~~G~~I~---~~-~~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSVS------RQ-VIVQDIAYLRSLGYNIV---AT-PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHHTCCCE---EE-TTEEECCTTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEE---EE-CCEEEECCcc
Confidence 34566888888643 579999999999998 67 99999999999999 76 22 4568776543
No 442
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.88 E-value=0.34 Score=38.77 Aligned_cols=41 Identities=24% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 40 EIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 40 d~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
+.+.+.| .|.|..|||+.+|++ .. .+.+.|+.|...|++..
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl~------~~-tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRIT------PR-GALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEC
T ss_pred HHHHHhC--CCCCHHHHHHHcCCC------cH-HHHHHHHHHHHCCCEEe
Confidence 3444554 589999999999997 56 89999999999999994
No 443
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=89.49 E-value=0.79 Score=33.49 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-CC----C
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQ----R 96 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~----~ 96 (269)
+.++-.+++=|...|.. +|.+--+|++.+ +++ +. .+..+|+-|...|+|+..... +. -
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk 76 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEIV------EG-TVYTILLRLEKNQWVIAEKKPSEKGPMRK 76 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSCC------HH-HHHHHHHHHHHTTSEEEEEEECC--CEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 34444455556777776 699999999987 465 66 999999999999999854211 11 2
Q ss_pred eEecChhchhhh
Q 024350 97 LYSLAPVSKYFV 108 (269)
Q Consensus 97 ~y~~t~~s~~l~ 108 (269)
.|++|+.|+...
T Consensus 77 ~Y~lT~~G~~~l 88 (116)
T 3hhh_A 77 FYRLTSSGEAEL 88 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 499999887544
No 444
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.49 E-value=0.49 Score=35.76 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceee-cCCCeEecC
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLA 101 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~-~~~~~y~~t 101 (269)
+.-+.-|++.|...+ ++.|++||.+.+ +++ .. -+.|.|+.|+..|++.+... .+..+|..+
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVG------LT-TVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------HH-HHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 344566888887754 689999999988 454 56 89999999999999985421 123467664
No 445
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=89.41 E-value=0.54 Score=40.16 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhCCC
Q 024350 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNAPS 234 (269)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a~~ 234 (269)
..++..+. ....+|+|++||+|..+.++++. +-+++++|+ |..++.+++
T Consensus 226 ~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 226 ERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34455443 23468999999999999998886 457899998 566665543
No 446
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.40 E-value=0.44 Score=30.08 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=39.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
+-.|.+.+..+| |-+.++..|+..|++ .+ -+..+|+-|...|++.
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV~------kd-eV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGVE------KQ-EVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCee
Confidence 345788888887 899999999999997 45 8899999999999986
No 447
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=89.32 E-value=0.34 Score=37.02 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCchhHHHHHHHHHHHHHhcCcccceeec---C--CCeE
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRLY 98 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~--------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~---~--~~~y 98 (269)
--.++-|+..|.. ++.+..+|++.+ +++ +. .+.++|+-|...|+|+..... + .-.|
T Consensus 40 g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~is------~g-tLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 40 GYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVIK------ET-TLYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp GTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCCC------HH-HHHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred CcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCcC------hh-HHHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 3345566677766 589999988887 476 56 999999999999999854221 1 1359
Q ss_pred ecChhchhhh
Q 024350 99 SLAPVSKYFV 108 (269)
Q Consensus 99 ~~t~~s~~l~ 108 (269)
++|+.|+.+.
T Consensus 109 ~LT~~G~~~l 118 (145)
T 1xma_A 109 RITPEGIKYY 118 (145)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9999887544
No 448
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.25 E-value=0.77 Score=35.12 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=45.5
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-CCCeEecC
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSLA 101 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~~~y~~t 101 (269)
+.-+.-|++.|...+ ++.|++||.+.+ +++ .. .+.|.|+.|+..|+|.+.... +..+|..+
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNTS------IS-SVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 445566899998754 689999999998 565 56 899999999999999854211 12347653
No 449
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.20 E-value=0.17 Score=36.02 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHHhcChhH-HHHhcCCCCCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 29 AMQAVVELDVFE-IITKAGPGAKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 29 ~L~~a~~lglfd-~L~~~g~~~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
.+...++..|.+ .+.. | ..+ |..+||+.+|++ .. .+++.|+.|...|++..
T Consensus 15 ~l~~~i~~~I~~~~l~~-g--~~lps~~eLa~~~~vS------r~-tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-G--DTLPSVADIRAQFGVA------AK-TVSRALAVLKSEGLVSS 67 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-T--SBCCCHHHHHHHSSSC------TT-HHHHHTTTTTTSSCCEE
T ss_pred HHHHHHHHHHHhCCCCC-c--CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 344444555554 2332 2 456 999999999998 56 89999999999999985
No 450
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=88.76 E-value=0.59 Score=36.83 Aligned_cols=62 Identities=10% Similarity=0.230 Sum_probs=46.4
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCchhHHHHHHHHHHHHHhcCcccceeec-----CCCeEec
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSL 100 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~--------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-----~~~~y~~ 100 (269)
+++-|+..|.. +|.+.-||++.+ +++ .. .+.+.|+-|...|+|+..... ..-.|++
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~s------~~-~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~l 71 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKAS------HQ-QVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSI 71 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCCC------HH-HHHHHHHHHHHTTSEEECCC---------CEEE
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCCC------cC-cHHHHHHHHHHCCCeEEEeecCCCCCCceEEEe
Confidence 34556777876 699999999998 465 56 999999999999999853211 1235999
Q ss_pred Chhchh
Q 024350 101 APVSKY 106 (269)
Q Consensus 101 t~~s~~ 106 (269)
|+.|+.
T Consensus 72 T~~G~~ 77 (179)
T 1yg2_A 72 TQAGRS 77 (179)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 999984
No 451
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=88.60 E-value=0.59 Score=38.29 Aligned_cols=51 Identities=6% Similarity=0.127 Sum_probs=41.8
Q ss_pred CCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhhcC
Q 024350 50 KLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFVRN 110 (269)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~~~ 110 (269)
+.+..+||+.++++ .. .+.++++-|...|++.+ .....+.+|+.|+.+...
T Consensus 24 ~~~~~~la~~l~vs------~~-tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~~~ 74 (226)
T 2qq9_A 24 TPLRARIAERLEQS------GP-TVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLATA 74 (226)
T ss_dssp CCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHHHH
T ss_pred CccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHHHH
Confidence 34569999999998 66 89999999999999994 334679999999866533
No 452
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=88.40 E-value=0.64 Score=33.22 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhc
Q 024350 32 AVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSY 84 (269)
Q Consensus 32 ~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~ 84 (269)
.+.++||+..|.. |+.|..|||+.+|++ .. .+.|+=|.|..+
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGiS------~s-tISRi~r~L~~l 85 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGAG------IA-TITRGSNSLKAA 85 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCCC------HH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCCC------hh-hhhHHHHHHHHc
Confidence 4556899999988 689999999999998 66 888887777543
No 453
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=88.24 E-value=0.55 Score=35.19 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=38.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~----~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.++.|+..|.... +++|..||++.++ ++ .. .+.++|+-|...|+|.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLA------YT-TVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCC------HH-HHHHHHHHHHHCCCEEEE
Confidence 3556677777621 5899999999998 55 56 899999999999999953
No 454
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=88.23 E-value=0.39 Score=35.21 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCC------CCCCCchhHHHHHHHHHHHHHhcCcccceeec-CC----C
Q 024350 28 AAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQ----R 96 (269)
Q Consensus 28 ~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~------~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~----~ 96 (269)
+.+.-..++-|+..|.. +|.+.-+|++.+. ++ +. .+.+.|+-|...|+|+..... +. -
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~------~g-tly~~L~~Le~~GlI~~~~~~~~~~~~rk 77 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALP------QG-SIYILLKTMKERGFVISESSVNEKGQQLT 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCC------TT-HHHHHHHHHHHHTSEEEEEEEC-CCCEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCC------cc-hHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 34445556667777876 6899999998886 65 45 899999999999999854221 11 2
Q ss_pred eEecChhchhhhcC
Q 024350 97 LYSLAPVSKYFVRN 110 (269)
Q Consensus 97 ~y~~t~~s~~l~~~ 110 (269)
.|++|+.|+.....
T Consensus 78 ~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 78 VYHITDAGKKFLCD 91 (117)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEEECHHHHHHHHH
Confidence 59999999854433
No 455
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=88.19 E-value=0.13 Score=43.30 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=26.8
Q ss_pred CccEEEEeCCCchHHHHHHHHH-------CCC-----CeEEEeeh
Q 024350 193 HVKKLVDVGGGLGATLNMIISK-------YPH-----IKGINYDL 225 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~-------~P~-----l~~vv~Dl 225 (269)
+..+|++||.|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999988887665 784 67888885
No 456
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=87.34 E-value=0.71 Score=41.14 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=41.9
Q ss_pred HHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 30 MQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 30 L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
++..-+..|++.|... +++|..|||+.+|++ .. .+.++++.|...|++.+
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~ls------~~-tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQLA------PA-SITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEe
Confidence 3444445588888886 599999999999998 66 89999999999999984
No 457
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=86.63 E-value=0.73 Score=33.58 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=46.0
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCC------CCCCCchhHHHHHHHHHHHHHhcCcccceeec-CC----CeEecChh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQ----RLYSLAPV 103 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~------~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~-~~----~~y~~t~~ 103 (269)
++-|+..|.. +|.+--+|++.+. ++ +. .+.++|+-|...|+|+..... +. -.|++|+.
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 79 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFVS------EG-SIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDK 79 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTCC------HH-HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cC-hHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHH
Confidence 3445666776 5899999998875 65 56 999999999999999854211 11 24999998
Q ss_pred chhhh
Q 024350 104 SKYFV 108 (269)
Q Consensus 104 s~~l~ 108 (269)
|+...
T Consensus 80 G~~~l 84 (115)
T 4esb_A 80 GLEQL 84 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87444
No 458
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=86.42 E-value=0.88 Score=36.70 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
++++..+||+.+|++ +. .++..++-|...|+++.. .+...+|+.|+.+.
T Consensus 29 ~~V~~~~LA~~LgvS------~~-SV~~~lkkL~e~GLV~~~----~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLELG------EG-SVRTLLRKLSHLDIIRSK----QRGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe----CCCeEECHHHHHHH
Confidence 489999999999998 67 999999999999999952 26788999988443
No 459
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=86.38 E-value=1.1 Score=33.23 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=34.3
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEe
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS 99 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~ 99 (269)
..+ |..+||+.+|++ .. .+++-|+.|...|++... .+.|.|-
T Consensus 26 ~~LPse~~La~~~gvS------r~-tVr~Al~~L~~~Gli~~~--~g~G~~V 68 (129)
T 2ek5_A 26 QRVPSTNELAAFHRIN------PA-TARNGLTLLVEAGILYKK--RGIGMFV 68 (129)
T ss_dssp SCBCCHHHHHHHTTCC------HH-HHHHHHHHHHTTTSEEEE--TTTEEEE
T ss_pred CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEe--cCCEEEE
Confidence 456 899999999998 66 899999999999999853 3445554
No 460
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=86.38 E-value=0.53 Score=34.35 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=38.5
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCC----CCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPL----KDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~----~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
.++.|+..|-.. +++|..|||+.++. + .. .+.++|+-|...|+|.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVS------DK-TIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCC------hh-hHHHHHHHHHHCCceEEE
Confidence 355667777775 58999999999974 4 56 899999999999999954
No 461
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=86.01 E-value=0.79 Score=33.18 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
..+ |..+||+.+|++ .. .+++.|+.|...|+++.. .+.|.|-.
T Consensus 31 ~~lPs~~~La~~~~vS------r~-tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 31 EMIPSIRKISTEYQIN------PL-TVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 456 899999999998 66 899999999999999853 34455543
No 462
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=85.92 E-value=2.7 Score=26.48 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 40 EIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 40 d~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
..|+.-. ..+|+.|+|...|++ .+ ..+.-|+.|.+.|-+.+ ...+|++-|
T Consensus 10 all~s~~--QGMTaGEVAA~f~w~------Le-~ar~aLeqLf~~G~LRK----RsSRYrlkp 59 (68)
T 3i71_A 10 ALLTSVR--QGMTAGEVAAHFGWP------LE-KARNALEQLFSAGTLRK----RSSRYRLKP 59 (68)
T ss_dssp HHHHHCT--TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE----ECCEEEECC
T ss_pred HHHHHHh--ccccHHHHHHHhCCc------HH-HHHHHHHHHHhcchhhh----hccccccCc
Confidence 3444433 579999999999997 67 88999999999999994 257898865
No 463
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=85.91 E-value=1.4 Score=33.00 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=43.1
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceee-cCCCeEecC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLA 101 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~-~~~~~y~~t 101 (269)
-+.-|++.|...+ +++.|++||.+.+ +++ .. .+.|.|+.|+..|++.+... .+..+|..+
T Consensus 19 qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDVG------LA-TVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCC------HH-HHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 3455788887631 1489999999998 565 56 89999999999999985421 122457753
No 464
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=85.44 E-value=0.91 Score=38.90 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh
Q 024350 191 FEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL 225 (269)
Q Consensus 191 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl 225 (269)
+....++|||||+.|.++.-++++.+-..++.+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 55678999999999999999998766555666776
No 465
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.96 E-value=0.66 Score=34.09 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=35.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
.|.++.+||+.++++ +. .+..+|+.|+..|.+.. ...+.|-++
T Consensus 19 ~p~~~~~la~~~~~~------~~-~~~~~l~~l~~~G~l~~---i~~~~~~~~ 61 (121)
T 2pjp_A 19 EPWWVRDLAKETGTD------EQ-AMRLTLRQAAQQGIITA---IVKDRYYRN 61 (121)
T ss_dssp SCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEH
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE---ecCCceECH
Confidence 377999999999997 66 88999999999999994 445666553
No 466
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=84.92 E-value=0.83 Score=38.14 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=47.4
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCC---eEecChhchhhh
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSKYFV 108 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~---~y~~t~~s~~l~ 108 (269)
..+...|-+.+ ++++|..|||+.++++ .. .+.++|+-|...|+|.+..-..+. ...+|+.|+.+.
T Consensus 37 ~~vL~~L~~~~-~~~~~~~el~~~l~~~------~~-t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQ-ENTLPFKKIVSDLCYK------QS-DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCS-CSEEEHHHHHHHSSSC------GG-GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 34566666531 1479999999999998 56 899999999999999864222222 367888887654
No 467
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=84.53 E-value=0.99 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
..+ |..+||+.+|++ .. .+++-|+.|...|++... .+.|.|-.
T Consensus 33 ~~lPse~~La~~~~vS------r~-tvr~Al~~L~~~Gli~~~--~g~G~~V~ 76 (126)
T 3by6_A 33 DQLPSVRETALQEKIN------PN-TVAKAYKELEAQKVIRTI--PGKGTFIT 76 (126)
T ss_dssp CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEEc
Confidence 466 999999999998 56 899999999999999853 34555543
No 468
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=83.97 E-value=1.4 Score=32.42 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
..+ |..+||+.+|++ .. .+++-|..|...|+|... .+.|.|-.
T Consensus 35 ~~Lps~~~La~~~~vS------r~-tvr~Al~~L~~~G~i~~~--~g~G~~V~ 78 (125)
T 3neu_A 35 DKLPSVREMGVKLAVN------PN-TVSRAYQELERAGYIYAK--RGMGSFVT 78 (125)
T ss_dssp CBCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEe--cCCEEEEe
Confidence 456 699999999998 66 999999999999999953 34566644
No 469
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.84 E-value=0.87 Score=40.25 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 25 VLPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 25 ~~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
..+.+++...+..|++.|. . +++|..|||+.+|++ .. .+.++++-|...|++.+.
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gls------~~-tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGLT------KT-TVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEee
Confidence 3456777777888999999 6 599999999999998 67 899999999999999853
No 470
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.54 E-value=1.1 Score=31.92 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
+.+ |..+||+.+|++ .. .+++-|+.|...|+|..
T Consensus 41 ~~lps~~eLa~~lgVS------r~-tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 41 EGLLVASKIADRVGIT------RS-VIVNALRKLESAGVIES 75 (102)
T ss_dssp EEEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred CcCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 355 999999999998 67 99999999999999985
No 471
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=83.54 E-value=1.3 Score=33.77 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=38.1
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
-.|.+.|. . |+.|..+||+++|++ -. ...-+|..|.-.|++.+.
T Consensus 14 ~~ILE~Lk-~---G~~~t~~Iak~LGlS------hg-~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLA-D---GCKTTSLIQQRLGLS------HG-RAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHT-T---CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHH-h---CCccHHHHHHHhCCc------HH-HHHHHHHHHHhcCceEEE
Confidence 34678888 4 699999999999998 56 889999999999999854
No 472
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=83.30 E-value=1.2 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
..+ |..+||+.+|++ .. .+++-|+.|...|+|... .+.|.|-.
T Consensus 36 ~~LPser~La~~~gVS------r~-tVReAl~~L~~eGlv~~~--~g~G~~V~ 79 (134)
T 4ham_A 36 EKILSIREFASRIGVN------PN-TVSKAYQELERQEVIITV--KGKGTFIA 79 (134)
T ss_dssp CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--cCcEEEEe
Confidence 456 889999999998 66 999999999999999863 45676643
No 473
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.75 E-value=0.25 Score=43.38 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
-+..++..|... +++|..|||+.++++ +. .++|.|+.|...|++... .....+|+.|+.+.
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~vs------~~-Tv~r~l~~Le~~Glv~~~----~~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMGIT------ER-VLRTETDVLKQLNLIEPS----KSGMTLTERGLEVY 81 (345)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE----ecceEEcHHHHHHH
Confidence 345677777775 589999999999998 66 999999999999999831 23366787777554
No 474
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=82.72 E-value=1 Score=40.12 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=42.6
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
..|++.|.. +|.++++|++.+|++ .. .+...|-.|.-.|++. +..++.|+++
T Consensus 331 ~~vl~~l~~----~~~~~D~l~~~~gl~------~~-~v~~~L~~LEl~G~v~---~~~Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP----SPVGIDDLIRLSGIS------PA-VVRTILLELELAGRLE---RHGGSLVSLS 382 (382)
T ss_dssp HHHHHHCCS----SCEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTCCE---ECTTSEEEC-
T ss_pred HHHHHhhCC----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHhCCcEE---eCCCceEecC
Confidence 347788865 599999999999997 67 8899999999999999 4456788763
No 475
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=82.53 E-value=3 Score=34.34 Aligned_cols=52 Identities=10% Similarity=0.191 Sum_probs=42.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 37 DVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 37 glfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
-|.-.|.. ++.|+++||+.+|++ ++ .+...|.-|...|+|+ +..+++....+
T Consensus 169 ~l~~~l~~----~~~t~~~la~~~~l~------~~-~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 169 ILHYLLLN----GRATVEELSDRLNLK------ER-EVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HHHHHHHS----SEEEHHHHHHHHTCC------HH-HHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred HHHHHHhc----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 34555665 699999999999998 77 9999999999999998 34578777654
No 476
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=82.39 E-value=1.3 Score=38.16 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=54.0
Q ss_pred CccEEEEeCCCchHHHHHHHHHCC-CCeEEEeehhHHHHhCC---------CCCCceEEecccCCcCC-----CC-----
Q 024350 193 HVKKLVDVGGGLGATLNMIISKYP-HIKGINYDLLYVIKNAP---------SYPGIDHVGGDLFESVP-----KA----- 252 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~vv~Dlp~vv~~a~---------~~~ri~~~~gD~~~~~P-----~g----- 252 (269)
+...||+||||-=+...++. +| +++++-+|.|.|++..+ ..++..+++.|+.+.+. .+
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 45789999999988876665 35 48889999999997533 23789999999986321 11
Q ss_pred -cEEEeccccccCCCC
Q 024350 253 -DTIFMKVICVCYLNS 267 (269)
Q Consensus 253 -D~~~l~~iLhd~~d~ 267 (269)
=++++--+||+.+++
T Consensus 180 Pt~~i~Egvl~Yl~~~ 195 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPAT 195 (310)
T ss_dssp CEEEEECSCGGGSCHH
T ss_pred CEEEEEechHhhCCHH
Confidence 367777888888764
No 477
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=82.35 E-value=1.6 Score=37.68 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=43.1
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
+..|.+.|... +.+|.++||+.++++ +. .++|-|+.|...|++... .. ...|++.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~vS------~~-ti~r~l~~L~~~G~~i~~-~~-g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGMS------RA-AINKHIQTLRDWGVDVFT-VP-GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCCCEE-ET-TTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHhCCCcEEE-ec-CCCcEEee
Confidence 34567777653 589999999999998 77 999999999999998642 22 33577754
No 478
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.97 E-value=1.3 Score=31.19 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=40.5
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
-+.-|+..+..+|. ..++..+|...++++ .. .+.++|+.|...+++..
T Consensus 38 ~E~lVy~~I~~aGn-~GIw~kdL~~~tnL~------~~-~vtkiLK~LE~k~lIK~ 85 (95)
T 2yu3_A 38 QEKLVYQIIEDAGN-KGIWSRDVRYKSNLP------LT-EINKILKNLESKKLIKA 85 (95)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCCC------HH-HHHHHHHHHHhCCCEEE
Confidence 34557888888763 579999999999997 56 99999999999999984
No 479
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=81.08 E-value=2.2 Score=38.15 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCccEEEEeCCCchHHHHHHH-HHCCC-CeEEEee-hhHHHHhC
Q 024350 192 EHVKKLVDVGGGLGATLNMII-SKYPH-IKGINYD-LLYVIKNA 232 (269)
Q Consensus 192 ~~~~~vvDvGGG~G~~~~~l~-~~~P~-l~~vv~D-lp~vv~~a 232 (269)
++..+++|||++.|.++..++ +..|. .+++.++ .|...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 456899999999999999988 67776 7899998 46665543
No 480
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=81.07 E-value=3 Score=35.39 Aligned_cols=33 Identities=15% Similarity=-0.021 Sum_probs=26.3
Q ss_pred CccEEEEeCCCchHHHHHHHHHC-----CCCeEEEeeh
Q 024350 193 HVKKLVDVGGGLGATLNMIISKY-----PHIKGINYDL 225 (269)
Q Consensus 193 ~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~vv~Dl 225 (269)
.+..||+||...|..++.+++.. |+-+++++|.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 46799999999999887776554 5778888883
No 481
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=79.86 E-value=2 Score=35.29 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeE
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLY 98 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y 98 (269)
..++..+||+.+|++ .. .+++-|+.|...|+|+.. .+.|.|
T Consensus 48 ~~L~e~~La~~lgVS------r~-~VReAL~~L~~~Glv~~~--~~~G~~ 88 (237)
T 3c7j_A 48 TALRQQELATLFGVS------RM-PVREALRQLEAQSLLRVE--THKGAV 88 (237)
T ss_dssp CBCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE--TTTEEE
T ss_pred CeeCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCCceE
Confidence 688999999999998 67 999999999999999953 244554
No 482
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=79.68 E-value=4 Score=29.98 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceeecCC----C
Q 024350 26 LPAAMQAVVELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ----R 96 (269)
Q Consensus 26 ~~~~L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~----~ 96 (269)
..+.++-.+++=|+..|. . |.+--+|.+.+ +++ +. .+..+|+-|...|+|+......+ -
T Consensus 14 ~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~~~rk 81 (123)
T 3ri2_A 14 VLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPIE------AN-TLYPLMRRLESQGLLASEWDNGGSKPRK 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSEEEEEEECSSCEEE
T ss_pred HHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCCC------cc-hHHHHHHHHHHCCCEEEEeccCCCCCce
Confidence 344444555555666665 2 77877777774 665 66 99999999999999985421111 2
Q ss_pred eEecChhchhhh
Q 024350 97 LYSLAPVSKYFV 108 (269)
Q Consensus 97 ~y~~t~~s~~l~ 108 (269)
.|++|+.|+...
T Consensus 82 ~Y~LT~~Gr~~l 93 (123)
T 3ri2_A 82 YYRTTDEGLRVL 93 (123)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 599999887444
No 483
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=79.17 E-value=2.2 Score=38.23 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=43.0
Q ss_pred HHHHHhcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccc
Q 024350 30 MQAVVELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (269)
Q Consensus 30 L~~a~~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~ 89 (269)
++..-+..|++.|... +++|..|||+.+|++ .. .+.++++.|...|++.+
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gls------~~-tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESELA------PA-SITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEe
Confidence 4555556689999886 599999999999998 66 89999999999999984
No 484
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=78.72 E-value=4.3 Score=29.33 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=42.6
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-------CCCCCCchhHHHHHHHHHHHHHhcCcccceeecC--C----CeEecChhc
Q 024350 38 VFEIITKAGPGAKLSVSEIVAQI-------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG--Q----RLYSLAPVS 104 (269)
Q Consensus 38 lfd~L~~~g~~~~~s~~eLA~~~-------~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~--~----~~y~~t~~s 104 (269)
|...|.. +|.+--+|.+.+ +++ +. .+..+|+-|...|+|+...... . -.|++|+.|
T Consensus 27 IL~lL~~----~~~~Gyei~~~l~~~~~~~~is------~g-tLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G 95 (115)
T 2dql_A 27 ILYVLLQ----GESYGTELIQQLETEHPTYRLS------DT-VLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEW 95 (115)
T ss_dssp HHHHHTT----SCBCHHHHHHHHHHHCTTEECC------HH-HHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGG
T ss_pred HHHHHHh----CCCCHHHHHHHHHHHcCCCCCC------cc-hHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHH
Confidence 4555655 588888877766 355 56 9999999999999998642221 1 249999988
Q ss_pred hhhh
Q 024350 105 KYFV 108 (269)
Q Consensus 105 ~~l~ 108 (269)
+...
T Consensus 96 ~~~l 99 (115)
T 2dql_A 96 QHQA 99 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
No 485
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=78.57 E-value=2.7 Score=39.57 Aligned_cols=60 Identities=5% Similarity=0.045 Sum_probs=48.9
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHh-----cCcccceeecCCCeEecChhchhhh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVS-----YNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~-----~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
+.-|+..|... +.+|..+|++.++++ +. .+.+.|+.|.. .|+++ ..+ +.|.+++......
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~~s------~~-~~~~~L~~L~~~~~~~~glie---~~g-~~y~L~~~~~~~~ 496 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQSG------KE-AARNALEAARQTTVAGAPLII---AHD-GVWLLGNACREIL 496 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTSC------HH-HHHHHHHHHHTCEETTEESEE---EET-TEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhCcC------HH-HHHHHHHHHHhhhccccceEE---EeC-CEEEECHHHHHHh
Confidence 34577888876 489999999999998 67 89999999999 89999 444 7899998755443
No 486
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=78.46 E-value=2.2 Score=32.46 Aligned_cols=59 Identities=17% Similarity=0.348 Sum_probs=42.0
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceee-cCCCeEecC
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLA 101 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~-~~~~~y~~t 101 (269)
+.-|++.|...+ +++.|++||.+.+ +++ .. .+.|.|+.|+..|+|.+... .+..+|.++
T Consensus 19 R~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 19 RLKILEVLQQPE-CQHISAEELYKKLIDLGEEIG------LA-TVYRVLNQFDDAGIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp HHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------HH-HHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 445788886531 0389999999998 565 56 89999999999999985421 123457653
No 487
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=78.28 E-value=2.2 Score=36.65 Aligned_cols=33 Identities=9% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCccc
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~ 88 (269)
+++|.+|||+.+|++ +. .++|.|..|...|+|.
T Consensus 20 ~~~~~~ela~~l~vS------~~-tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGIY------RT-TISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEE
Confidence 579999999999998 67 9999999999999997
No 488
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.58 E-value=3.5 Score=25.84 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred hHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcc
Q 024350 39 FEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (269)
Q Consensus 39 fd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l 87 (269)
...+... ++.|++||++.+ +++ .. .++|-|+ .+|++
T Consensus 11 ~~ll~~~---~~~t~~el~~~l~~~~~~vs------~~-Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSN---EIETQDELVDMLKQDGYKVT------QA-TVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHS---CCCSHHHHHHHHHHTTCCCC------HH-HHHHHHH---HHTCE
T ss_pred HHHHHcC---CCCCHHHHHHHHHHhCCCcC------HH-HHHHHHH---HcCCE
Confidence 3445543 589999999999 997 56 7888888 66877
No 489
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=77.34 E-value=4.2 Score=33.13 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=31.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccce
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~ 90 (269)
+.+|+.+||+.+|++ .. +....|+.+...|++..+
T Consensus 167 g~vt~~~la~~l~ws------~~-~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMS------VL-LAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHcCCEEEE
Confidence 589999999999998 66 889999999999999954
No 490
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=77.25 E-value=3.1 Score=31.38 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=41.7
Q ss_pred HhcChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCchhHHHHHHHHHHHHHhcCcccceee-cCCCeEecC
Q 024350 34 VELDVFEIITKAGPGAKLSVSEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLA 101 (269)
Q Consensus 34 ~~lglfd~L~~~g~~~~~s~~eLA~~~-----~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~-~~~~~y~~t 101 (269)
-+.-|++.|... ++.|++||.+.+ +++ .. -+.|.|+.|+..|++.+..- .+..+|.+.
T Consensus 20 qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is------~~-TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 20 QRQLVLEAVDTL---EHATPDDILGEVRKTASGIN------IS-TVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCC------HH-HHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCC------Hh-HHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 345578888775 389999999887 344 45 89999999999999985421 122357654
No 491
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=76.65 E-value=2.1 Score=34.55 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=35.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEe
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS 99 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~ 99 (269)
..+|-.+||+.+|++ .. .++.-|+.|...|+|+.. .+.|.|-
T Consensus 34 ~~L~e~~La~~lgVS------Rt-pVREAL~~L~~eGlv~~~--~~~G~~V 75 (218)
T 3sxy_A 34 EKLNVRELSEKLGIS------FT-PVRDALLQLATEGLVKVV--PRVGFFV 75 (218)
T ss_dssp CEECHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEEE--TTTEEEE
T ss_pred CEeCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCCceEE
Confidence 678999999999998 67 999999999999999963 3445443
No 492
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=76.43 E-value=2.4 Score=34.49 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=36.4
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
..+ |-.+||+.+|++ .. .++.-|+.|...|+|+.. .+.|.|-..
T Consensus 29 ~~LPsE~eLa~~~gVS------R~-tVReAL~~L~~eGlv~~~--~g~G~~V~~ 73 (239)
T 1hw1_A 29 TILPAERELSELIGVT------RT-TLREVLQRLARDGWLTIQ--HGKPTKVNN 73 (239)
T ss_dssp SBCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTEEEEECC
T ss_pred CCCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEe--cCCCcEeeC
Confidence 578 899999999998 56 899999999999999963 355666543
No 493
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=76.15 E-value=13 Score=28.79 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhchhhHHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh
Q 024350 165 FNDVFSNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL 225 (269)
Q Consensus 165 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl 225 (269)
+...|..-|.+-.... ........+.+ .-|+|+|=|.|..=-.+.+.+|+-+..|||+
T Consensus 15 RLDsfirRltaQR~~L-~~a~~~v~~~~--GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 15 RLDLFIDRMVSQRACL-EHAIAQTAGLS--GPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTTCC--SCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCC--CceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 4567777777654432 22233333233 4699999999999999999999999999997
No 494
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=74.44 E-value=5.2 Score=33.17 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=34.6
Q ss_pred HHHHHHhccCCCCccEEEEeCCCchHHHHHHHHHCCCCeEEEeeh-hHHHHhC
Q 024350 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPHIKGINYDL-LYVIKNA 232 (269)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~vv~Dl-p~vv~~a 232 (269)
...++..+. .....|+|..||+|+.+.+..+. +-+++++|+ |..++.+
T Consensus 202 ~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 202 IERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp HHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 334455443 23468999999999999998887 467899998 5555544
No 495
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=73.52 E-value=3.3 Score=35.81 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=42.9
Q ss_pred hcChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecCh
Q 024350 35 ELDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (269)
Q Consensus 35 ~lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~ 102 (269)
+..|++.|.++. +.++|.++||+.+|++ .. .+.+.++.|...|+.-.. ....-|++.+
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lgvS------r~-aV~k~i~~L~~~G~~i~~--~~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLNIS------RT-AVKKVIDQLKLEGCKIDS--VNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCEEEE--ETTTEEEEEE
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHCCC------HH-HHHHHHHHHHhcCCeEEE--eCCCeEEEec
Confidence 345777885421 1589999999999998 67 999999999999996532 1234588764
No 496
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=73.51 E-value=5.8 Score=27.93 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=37.3
Q ss_pred CCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecChhchhhh
Q 024350 50 KLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSKYFV 108 (269)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t~~s~~l~ 108 (269)
.-...+|.+..+.. +. +. .+..+|+-|...|+++.......-.|++|+.|+...
T Consensus 28 ~~i~~ei~~~~~~~---is-~G-tlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l 81 (99)
T 2co5_A 28 KRLRSEILKRFDID---IS-DG-VLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEF 81 (99)
T ss_dssp GGHHHHHHHHHCCB---CC-HH-HHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCC---CC-CC-cHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHH
Confidence 34457777776532 11 56 999999999999999854211234699999998544
No 497
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=73.32 E-value=5 Score=32.92 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=35.8
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
..+ |..+||+..|++ .. .+++-|+.|...|++... .+.|.|-.
T Consensus 27 ~~lPse~~La~~~~vS------r~-tvr~Al~~L~~~g~i~~~--~g~G~~V~ 70 (239)
T 3bwg_A 27 DKLPVLETLMAQFEVS------KS-TITKSLELLEQKGAIFQV--RGSGIFVR 70 (239)
T ss_dssp CBCCCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEe--CCceEEEe
Confidence 567 899999999998 56 899999999999999863 45676654
No 498
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=73.27 E-value=4.8 Score=32.98 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.2
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEecC
Q 024350 49 AKL-SVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (269)
Q Consensus 49 ~~~-s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~t 101 (269)
..+ |-.+||+..|++ .. .+++-|+.|...|++... .+.|.|-..
T Consensus 31 ~~lPse~~La~~~~vS------r~-tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 75 (236)
T 3edp_A 31 MLMPNETALQEIYSSS------RT-TIRRAVDLLVEEGLVVRK--NGVGLYVQP 75 (236)
T ss_dssp C--CCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE--CCceEEEcc
Confidence 467 899999999998 56 899999999999999963 456777654
No 499
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=73.23 E-value=3.1 Score=34.10 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=34.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeE
Q 024350 49 AKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLY 98 (269)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y 98 (269)
..++-.+||+.+|++ .. .++.-|+.|...|+|+.. .+.|.|
T Consensus 50 ~~L~e~~La~~lgVS------Rt-pVREAL~~L~~eGlv~~~--~~~G~~ 90 (239)
T 2hs5_A 50 ARLSEPDICAALDVS------RN-TVREAFQILIEDRLVAHE--LNRGVF 90 (239)
T ss_dssp CEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEE
T ss_pred CEeCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCCeeE
Confidence 678999999999998 67 999999999999999963 334544
No 500
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=72.70 E-value=6.5 Score=32.68 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=40.8
Q ss_pred cChhHHHHhcCCCCCCCHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhcCcccceeecCCCeEec
Q 024350 36 LDVFEIITKAGPGAKLSVSEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (269)
Q Consensus 36 lglfd~L~~~g~~~~~s~~eLA~~~~~~~~~~~~~~~~l~rlL~~L~~~g~l~~~~~~~~~~y~~ 100 (269)
-.|...+.+.|- .|-++.||++.++++ +. .+..+|+.|+..|.+. +..++.|-+
T Consensus 144 ~~i~~~~~~~g~-~pp~~~dl~~~l~~~------~~-~~~~~l~~l~~~g~lv---~l~~~~~~~ 197 (258)
T 1lva_A 144 KDLEDKYRVSRW-QPPSFKEVAGSFNLD------PS-ELEELLHYLVREGVLV---KINDEFYWH 197 (258)
T ss_dssp HHHHHHHHHHTT-SCCBHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEE---ESSSSBEEE
T ss_pred HHHHHHHHHCCC-CCCCHHHHHhHhCCC------HH-HHHHHHHHHHHCCCEE---EecCCeEEc
Confidence 345555654332 266899999999997 66 8899999999999999 555677755
Done!