BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024351
MPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFW
IDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFL
KQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLK
TCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNF
IMSWLKAVLHTLLRVVFSSWEKVRAEKNS

High Scoring Gene Products

Symbol, full name Information P value
AT5G59960 protein from Arabidopsis thaliana 5.6e-116

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024351
        (269 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168158 - symbol:AT5G59960 "AT5G59960" species...  1143  5.6e-116  1


>TAIR|locus:2168158 [details] [associations]
            symbol:AT5G59960 "AT5G59960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] GO:GO:0005783 GO:GO:0005634
            EMBL:CP002688 IPI:IPI00544349 RefSeq:NP_568917.1 UniGene:At.20143
            PRIDE:F4JXE8 EnsemblPlants:AT5G59960.1 GeneID:836118
            KEGG:ath:AT5G59960 OMA:IQTNTRH Uniprot:F4JXE8
        Length = 359

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 210/262 (80%), Positives = 239/262 (91%)

Query:     3 ESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWID 62
             E G+ ILDL+VQLWSQ F SHIF+LLFHKW+FEV+L+N E+LLRYSSALVQGATNVFWID
Sbjct:    96 ERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELDNQEILLRYSSALVQGATNVFWID 155

Query:    63 IQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQ 122
             IQTN+R FQSLFRYLLEEVALE  RL KIP+Q QR+L+L+LSRFIFFYNSVDKL+SFL+ 
Sbjct:   156 IQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQAQRELYLLLSRFIFFYNSVDKLDSFLRN 215

Query:   123 FPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTC 182
             FP FPNAFL+GG  DF VIE+ DQLQKLKVEPVLLHYLSQ+K+LQGMELRMTTSTRLK C
Sbjct:   216 FPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQMKILQGMELRMTTSTRLKAC 275

Query:   183 LYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIM 242
             LYSFTSPGGPMYPTRAVRHAAWDALD LFPVG+YPRH+ISLFFRLLYPW WPSSCWNF++
Sbjct:   276 LYSFTSPGGPMYPTRAVRHAAWDALDSLFPVGRYPRHLISLFFRLLYPWYWPSSCWNFVV 335

Query:   243 SWLKAVLHTLLRVVFSSWEKVR 264
             S +KAVL++++R++FS  EK R
Sbjct:   336 SCIKAVLYSIVRLIFSRREKPR 357


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      269       269   0.00096  114 3  11 22  0.37    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  216 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.31u 0.13s 21.44t   Elapsed:  00:00:01
  Total cpu time:  21.31u 0.13s 21.44t   Elapsed:  00:00:01
  Start:  Fri May 10 02:22:46 2013   End:  Fri May 10 02:22:47 2013

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