BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024351
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L5P|A Chain A, Solution Nmr Structure Of Protein Lipocalin 12 From Rat
           Epididymis
          Length = 184

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 120 LKQFPVFPNAFLVGGS-------ADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELR 172
           + Q P  P  F    S        ++FV+ +AD   K +  P+L  +++  K+    E +
Sbjct: 1   MGQSPTMPQGFSQMTSFQSNKFQGEWFVLGLADNTYKREHRPLLHSFITLFKLRDNSEFQ 60

Query: 173 MTTS-TRLKTC---LYSFTSPGGPMYPTRAVRHAAWDA 206
           +T S TR K C    Y+      P   TR  R +   A
Sbjct: 61  VTNSMTRGKHCSTWSYTLIPTNKPGQFTRDNRGSGPGA 98


>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
 pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
           Phosphoglucomutase From Brucella Melitensis Complexed
           With Glucose-6-Phosphate
          Length = 481

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 46  RYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNK----IPVQVQ 96
           RY+  L +G+ N   + +  +S   + L  YLL  + +EP  L +    +PV  +
Sbjct: 166 RYAGFLGKGSLNGLRVGVYQHSSVARDLLMYLLTTLGVEPVALGRSDIFVPVDTE 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,747,801
Number of Sequences: 62578
Number of extensions: 289818
Number of successful extensions: 623
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 4
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)