Query 024351
Match_columns 269
No_of_seqs 23 out of 25
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00170 cpcA phycocyanin alph 73.0 2.2 4.8E-05 37.5 1.8 19 185-203 65-83 (162)
2 TIGR01338 phycocy_alpha phycoc 70.9 2.8 6E-05 36.8 1.9 18 186-203 65-82 (161)
3 cd03572 ENTH_epsin_related ENT 67.3 6 0.00013 33.2 3.1 54 130-213 64-120 (122)
4 PF11707 Npa1: Ribosome 60S bi 58.1 93 0.002 29.1 9.5 130 96-247 131-300 (330)
5 PRK04330 hypothetical protein; 48.3 13 0.00028 30.2 1.9 41 175-215 7-47 (88)
6 CHL00172 cpeB phycoerythrin be 42.8 21 0.00045 32.1 2.5 23 185-208 65-87 (177)
7 COG1698 Uncharacterized protei 39.0 22 0.00048 29.3 2.0 24 194-217 30-53 (93)
8 PF03685 UPF0147: Uncharacteri 38.7 17 0.00037 29.4 1.2 39 177-215 6-44 (85)
9 CHL00173 cpeA phycoerythrin al 37.7 29 0.00063 30.6 2.6 22 186-208 66-87 (164)
10 COG5186 PAP1 Poly(A) polymeras 34.7 28 0.00061 35.5 2.3 50 181-237 221-272 (552)
11 COG3687 Predicted metal-depend 34.1 39 0.00084 32.6 3.0 37 184-222 21-57 (280)
12 TIGR01339 phycocy_beta phycocy 33.6 29 0.00062 30.9 2.0 22 186-208 64-85 (170)
13 cd06931 NR_LBD_HNF4_like The l 33.5 59 0.0013 28.1 3.9 71 141-211 119-205 (222)
14 PF04648 MF_alpha: Yeast matin 33.2 22 0.00048 20.1 0.7 7 188-194 7-13 (13)
15 PF08628 Nexin_C: Sorting nexi 32.2 1.1E+02 0.0024 24.1 4.9 72 137-228 21-108 (113)
16 PF00043 GST_C: Glutathione S- 30.1 95 0.0021 22.2 3.9 38 127-164 46-92 (95)
17 PF11880 DUF3400: Domain of un 26.9 38 0.00082 24.7 1.3 29 133-164 8-36 (45)
18 cd03188 GST_C_Beta GST_C famil 23.9 1.6E+02 0.0034 21.6 4.2 38 128-165 62-106 (114)
19 CHL00086 apcA allophycocyanin 23.5 64 0.0014 28.2 2.3 22 186-208 65-86 (161)
20 COG2049 DUR1 Allophanate hydro 23.3 27 0.00059 32.3 -0.0 54 135-191 97-178 (223)
21 CHL00089 apcF allophycocyanin 21.4 77 0.0017 28.0 2.4 21 186-207 66-86 (169)
22 cd08613 GDPD_GDE4_like_1 Glyce 21.3 77 0.0017 30.5 2.6 97 114-219 143-248 (309)
No 1
>CHL00170 cpcA phycocyanin alpha subunit; Reviewed
Probab=72.99 E-value=2.2 Score=37.52 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.3
Q ss_pred ccCCCCCCCCCChHHHHHH
Q 024351 185 SFTSPGGPMYPTRAVRHAA 203 (269)
Q Consensus 185 SfTsPGgP~y~~R~VR~aA 203 (269)
.+|+|||++|++|.+|.||
T Consensus 65 ~l~~pgGn~y~~~~~~~aa 83 (162)
T CHL00170 65 YTTQMPGPTYASSAIGKAK 83 (162)
T ss_pred CcCCCCCCccccchhHHHH
Confidence 3599999999999987765
No 2
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=70.85 E-value=2.8 Score=36.80 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred cCCCCCCCCCChHHHHHH
Q 024351 186 FTSPGGPMYPTRAVRHAA 203 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA 203 (269)
+|+|||++|++|.+|.+|
T Consensus 65 ~~~pgGn~y~~~~~~~aa 82 (161)
T TIGR01338 65 TTQMNGPNYASTATGKAK 82 (161)
T ss_pred cCCCCCCCccchhhHHHH
Confidence 599999999999986655
No 3
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.28 E-value=6 Score=33.22 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=37.5
Q ss_pred ccccCCcchhHHHHHHHhhhhcchhHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCCC---CCCChHHHHHHHHh
Q 024351 130 FLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGP---MYPTRAVRHAAWDA 206 (269)
Q Consensus 130 ~l~gg~aD~FV~ev~d~L~~ik~E~vLlhYL~~~~~lkg~eL~~tT~~rLqscLYSfTsPGgP---~y~~R~VR~aA~~~ 206 (269)
++.+.+..-|++++.++...|| .|+-++| |=.| .-+-..||.+|.++
T Consensus 64 ~l~~~G~~~f~~~~~~~~~~Ik----------~~~~f~g--------------------~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 64 HLCEKGNSDFKRELQRNSAQIR----------ECANYKG--------------------PPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHhhCCHHHHHHHHHhHHHHH----------HHHHcCC--------------------CCCcccCcchhHHHHHHHHHH
Confidence 3455566778888888865544 3555555 3344 44567799999999
Q ss_pred hhhhcCC
Q 024351 207 LDFLFPV 213 (269)
Q Consensus 207 LD~LFP~ 213 (269)
++++|..
T Consensus 114 ~~~if~~ 120 (122)
T cd03572 114 IKAIFSY 120 (122)
T ss_pred HHHHhcc
Confidence 9999964
No 4
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=58.07 E-value=93 Score=29.14 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=80.4
Q ss_pred hhhHHHHHHhHhhcccChhhHHHHHhhCCCCCCcccccCCcchhHHHHHHHhhhhcchhHHHHHHHHh--hhhcCCcccc
Q 024351 96 QRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQI--KVLQGMELRM 173 (269)
Q Consensus 96 r~dl~~ils~F~fyY~~~~~l~~fl~~fp~~pn~~l~gg~aD~FV~ev~d~L~~ik~E~vLlhYL~~~--~~lkg~eL~~ 173 (269)
|.-+...+-.|+-+ .+..-..+++.+- ++ +..+.+.|.+ +..+++...|+-+ .|+++-.++.
T Consensus 131 R~~fI~F~Lsfl~~-~~~~~~~~lL~~~-------------~~-~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r 194 (330)
T PF11707_consen 131 RTNFIRFWLSFLSS-GDPELKRDLLSQK-------------KL-MSALFKGLRK-DPPETVILILETLKDKVLKDSSVSR 194 (330)
T ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHcC-------------ch-HHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCCh
Confidence 55555555554433 2344555555552 22 5556666666 6666666666665 3666666666
Q ss_pred chhh---------hHhhhhhccCCCCCCCCCChHHHHHHHHhhhh---------hcCC-CCccH----------------
Q 024351 174 TTST---------RLKTCLYSFTSPGGPMYPTRAVRHAAWDALDF---------LFPV-GQYPR---------------- 218 (269)
Q Consensus 174 tT~~---------rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~---------LFP~-G~~~R---------------- 218 (269)
+||. +|.+ ||+...+ -..++|+.+|-+-|-. .||+ |=|+|
T Consensus 195 ~~K~~~fn~~~L~~l~~-Ly~~~~~----~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~ 269 (330)
T PF11707_consen 195 STKCKLFNEWTLSQLAS-LYSRDGE----DEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFK 269 (330)
T ss_pred hhhhhhcCHHHHHHHHH-HhcccCC----cccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCC
Confidence 6665 4566 9988877 5567799999998866 4663 23333
Q ss_pred ---HHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 024351 219 ---HVISLFFRLLYPWCWPSSCWNFIMSWLKA 247 (269)
Q Consensus 219 ---h~vslfFRLLhPyywp~S~wn~~~~~ik~ 247 (269)
.++.-+-+.|.||.-+. -.+-++++.++
T Consensus 270 ~~Nk~L~~ll~~lkp~e~~~-q~~Lvl~Il~~ 300 (330)
T PF11707_consen 270 INNKLLLNLLKKLKPWEDDR-QQELVLKILKA 300 (330)
T ss_pred cccHHHHHHHHHCCCCccHH-HHHHHHHHHHH
Confidence 56677777899999773 45555555554
No 5
>PRK04330 hypothetical protein; Provisional
Probab=48.34 E-value=13 Score=30.22 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=31.5
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 024351 175 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 215 (269)
Q Consensus 175 T~~rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~ 215 (269)
...++|.|++=+..=-.=.=+||-+|+||-++.+.|==.+.
T Consensus 7 ~e~~ik~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~ 47 (88)
T PRK04330 7 NEEKIKQAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEE 47 (88)
T ss_pred hHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCc
Confidence 44567777777766666667899999999999999976554
No 6
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=42.81 E-value=21 Score=32.09 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhh
Q 024351 185 SFTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 185 SfTsPGgP~y~~R~VR~aA~~~LD 208 (269)
..|+|||++|++|. ..|.++=+|
T Consensus 65 ~l~~pGGn~y~~~r-~aaClRD~~ 87 (177)
T CHL00172 65 GLISPGGNCYTNRR-MAACLRDGE 87 (177)
T ss_pred CCCCCCCCCCcHHH-HHHHHHHHH
Confidence 46999999999998 666666554
No 7
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.05 E-value=22 Score=29.31 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHhhhhhcCCCCcc
Q 024351 194 YPTRAVRHAAWDALDFLFPVGQYP 217 (269)
Q Consensus 194 y~~R~VR~aA~~~LD~LFP~G~~~ 217 (269)
=+||-||+||-++.+.|=-.|.-|
T Consensus 30 tVPRNIRraA~~a~e~L~~e~e~p 53 (93)
T COG1698 30 TVPRNIRRAAEEAKEALNNEGESP 53 (93)
T ss_pred cccHHHHHHHHHHHHHHhCCCCCc
Confidence 379999999999999998777654
No 8
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=38.65 E-value=17 Score=29.36 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=25.6
Q ss_pred hhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 024351 177 TRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 215 (269)
Q Consensus 177 ~rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~ 215 (269)
.++|.|++=+..=-.=.=.||-||++|-++.|.|-=.|.
T Consensus 6 ~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~ 44 (85)
T PF03685_consen 6 EKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEE 44 (85)
T ss_dssp HHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 345555554443333445799999999999999987766
No 9
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=37.66 E-value=29 Score=30.57 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=17.7
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~LD 208 (269)
+|.|||+.|++|. ..|.|+-.|
T Consensus 66 l~~pGG~~y~~~r-~aaC~RD~~ 87 (164)
T CHL00173 66 LKNPGEAGDSQEK-VNKCYRDVD 87 (164)
T ss_pred CCCCCCCCccchH-HHHHHHHHH
Confidence 6999999999998 666666554
No 10
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=34.68 E-value=28 Score=35.53 Aligned_cols=50 Identities=24% Similarity=0.631 Sum_probs=33.1
Q ss_pred hhhhc--cCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHhhcccCCcchh
Q 024351 181 TCLYS--FTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSC 237 (269)
Q Consensus 181 scLYS--fTsPGgP~y~~R~VR~aA~~~LD~LFP~G~~~Rh~vslfFRLLhPyywp~S~ 237 (269)
.|.|. |--|||-++.-=- .-.=.|+|. .-|--.|+=||++||-|.||.-+
T Consensus 221 RavYaN~~GfpGGVAwam~V------ARiCQLYPN-A~S~vIv~kFF~ils~WnWPqPv 272 (552)
T COG5186 221 RAVYANPYGFPGGVAWAMCV------ARICQLYPN-ASSFVIVCKFFEILSSWNWPQPV 272 (552)
T ss_pred hhhhccccCCcchHHHHHHH------HHHHhhccC-cchHhHHHHHHHHHHhcCCCCCe
Confidence 56765 4457774332111 113469994 55667899999999999999753
No 11
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=34.05 E-value=39 Score=32.57 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.5
Q ss_pred hccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHH
Q 024351 184 YSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVIS 222 (269)
Q Consensus 184 YSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~~~Rh~vs 222 (269)
++||.-+++-.+--+|+..-.++|-.|||.|. |++|.
T Consensus 21 Fd~s~~p~hw~~G~p~~T~vfNaLs~LlP~GE--~fFvd 57 (280)
T COG3687 21 FDLSDTPRHWVPGEPVATHVFNALSLLLPAGE--RFFVD 57 (280)
T ss_pred CccCCCCCCCCCCChHHHHHHHHHHHhccchh--HHHHH
Confidence 67888777777888899999999999999995 44443
No 12
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=33.58 E-value=29 Score=30.86 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=16.6
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~LD 208 (269)
.|+|||++|+||. ..|.|+=+|
T Consensus 64 l~~pGG~~y~~~r-~~aClRD~~ 85 (170)
T TIGR01339 64 LIAPGGNAYTSRR-MAACLRDME 85 (170)
T ss_pred CCCCCCCCCcHHH-HHHHHhhcc
Confidence 4799999999998 555565444
No 13
>cd06931 NR_LBD_HNF4_like The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes. The ligand binding domain of hepatocyte nuclear factor 4 (HNF4) like proteins: HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is constitutively active as a transcription activator. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, HNF4 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal lig
Probab=33.54 E-value=59 Score=28.13 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHhhhhcchhHHHHHHHHhhhhc----CC---ccccchhhhHhhhhhccCCCCCCCCCCh---------HHHHHHH
Q 024351 141 IEVADQLQKLKVEPVLLHYLSQIKVLQ----GM---ELRMTTSTRLKTCLYSFTSPGGPMYPTR---------AVRHAAW 204 (269)
Q Consensus 141 ~ev~d~L~~ik~E~vLlhYL~~~~~lk----g~---eL~~tT~~rLqscLYSfTsPGgP~y~~R---------~VR~aA~ 204 (269)
.++++.+..++..++=.-+|.++..+. |. +.-..-+.+++.||..+..-..|.++.| .+|+.+.
T Consensus 119 ~~~~~~l~~L~l~~~E~~lLkaiil~~p~~~~ls~~~~i~~~r~~~~~aL~~y~~~~~~~~~~Rf~~LL~~l~~lr~~~~ 198 (222)
T cd06931 119 DELVLPLRDLNIDDNEYACLKAIVFFDPDAKGLSDPQKIKRLRFQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITW 198 (222)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 467778887777666566677776663 22 1122345567789988876566777777 6888888
Q ss_pred Hhhhhhc
Q 024351 205 DALDFLF 211 (269)
Q Consensus 205 ~~LD~LF 211 (269)
+..+.++
T Consensus 199 ~~~e~l~ 205 (222)
T cd06931 199 QMIEQIQ 205 (222)
T ss_pred HHHHHHh
Confidence 8777765
No 14
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=33.18 E-value=22 Score=20.08 Aligned_cols=7 Identities=86% Similarity=1.668 Sum_probs=6.0
Q ss_pred CCCCCCC
Q 024351 188 SPGGPMY 194 (269)
Q Consensus 188 sPGgP~y 194 (269)
+||-|||
T Consensus 7 ~~GqP~Y 13 (13)
T PF04648_consen 7 SPGQPMY 13 (13)
T ss_pred cCCCcCC
Confidence 6899988
No 15
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=32.16 E-value=1.1e+02 Score=24.13 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=47.1
Q ss_pred chhHHHHHHHhhhhcchhHHHHHHHHhhhhcCCccccchhhhHhhhhhccCCCCC---CCCCChH------HHHHHHHhh
Q 024351 137 DFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGG---PMYPTRA------VRHAAWDAL 207 (269)
Q Consensus 137 D~FV~ev~d~L~~ik~E~vLlhYL~~~~~lkg~eL~~tT~~rLqscLYSfTsPGg---P~y~~R~------VR~aA~~~L 207 (269)
|.+=+-+-+++..+..|+.+.+||...+-. +. ||| |..++|. -|+.|.+.|
T Consensus 21 ~tI~r~i~~~v~~l~se~~v~~~i~~l~~~----------------lw----P~g~~~~~~~~Rt~~ek~~tr~~A~~~L 80 (113)
T PF08628_consen 21 STIERKIRDQVEWLTSEEQVARYIQLLRES----------------LW----PNGKLAEPPPPRTEEEKLRTRQEARELL 80 (113)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHh----------------hC----CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556666778888999999999999876432 11 444 2222332 677888899
Q ss_pred hhhcCC------CC-ccHHHHHHHHHhh
Q 024351 208 DFLFPV------GQ-YPRHVISLFFRLL 228 (269)
Q Consensus 208 D~LFP~------G~-~~Rh~vslfFRLL 228 (269)
..++|+ |+ -.|.-+..+|..|
T Consensus 81 ~~~~P~~l~~vvG~~~~~~g~~~if~~L 108 (113)
T PF08628_consen 81 LSLLPDTLKKVVGSENSRRGARRIFEML 108 (113)
T ss_pred HHhcHHHHHHccCHHHHHHHHHHHHHHH
Confidence 888884 33 3455555555543
No 16
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=30.09 E-value=95 Score=22.23 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCcccccC---CcchhHHHHHHHhhhhcchhH------HHHHHHHhh
Q 024351 127 PNAFLVGG---SADFFVIEVADQLQKLKVEPV------LLHYLSQIK 164 (269)
Q Consensus 127 pn~~l~gg---~aD~FV~ev~d~L~~ik~E~v------LlhYL~~~~ 164 (269)
.+.+++|. .||+.+-..++.+..+..... |.++.++|.
T Consensus 46 ~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~ 92 (95)
T PF00043_consen 46 GGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMF 92 (95)
T ss_dssp TSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHH
T ss_pred CCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHH
Confidence 67788875 699999999999877766554 666666653
No 17
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=26.92 E-value=38 Score=24.72 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=22.8
Q ss_pred cCCcchhHHHHHHHhhhhcchhHHHHHHHHhh
Q 024351 133 GGSADFFVIEVADQLQKLKVEPVLLHYLSQIK 164 (269)
Q Consensus 133 gg~aD~FV~ev~d~L~~ik~E~vLlhYL~~~~ 164 (269)
|..+|+.|.|+++++ --|.-...|+.++.
T Consensus 8 ~~~aDYIVVEmA~~l---LGe~W~~~~v~~a~ 36 (45)
T PF11880_consen 8 GLEADYIVVEMARHL---LGENWQQDYVERAN 36 (45)
T ss_pred CCccceehHHHHHHH---hhhhHHHHHHHHHH
Confidence 468999999999984 45777778887763
No 18
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=23.89 E-value=1.6e+02 Score=21.61 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=27.0
Q ss_pred CcccccC---CcchhHHHHHHHhhhhcch----hHHHHHHHHhhh
Q 024351 128 NAFLVGG---SADFFVIEVADQLQKLKVE----PVLLHYLSQIKV 165 (269)
Q Consensus 128 n~~l~gg---~aD~FV~ev~d~L~~ik~E----~vLlhYL~~~~~ 165 (269)
+.+++|. .+|+.+..+++.+.....+ |.+..|++++.-
T Consensus 62 ~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 106 (114)
T cd03188 62 GPYLLGDRFSVADAYLFVVLRWAPGVGLDLSDWPNLAAYLARVAA 106 (114)
T ss_pred CCeeeCCCcchHHHHHHHHHHHHhhcCCChhhChHHHHHHHHHHh
Confidence 5677774 6999999888887654432 567778877754
No 19
>CHL00086 apcA allophycocyanin alpha subunit
Probab=23.48 E-value=64 Score=28.19 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=15.8
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~LD 208 (269)
.++|||+.|++|. ..|.|.=+|
T Consensus 65 l~~~gG~~y~~~r-~~aC~RD~~ 86 (161)
T CHL00086 65 IVSPGGNAYGEEM-TATCLRDLD 86 (161)
T ss_pred CcCCCCCCccHHH-HHHHHHHHH
Confidence 3799999999987 445554433
No 20
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=23.28 E-value=27 Score=32.34 Aligned_cols=54 Identities=31% Similarity=0.458 Sum_probs=32.9
Q ss_pred CcchhHHHHHHHhhhhcchhHHH-HH----HHHhhhh-------cCCc----cccchhhh------------Hhhhhhcc
Q 024351 135 SADFFVIEVADQLQKLKVEPVLL-HY----LSQIKVL-------QGME----LRMTTSTR------------LKTCLYSF 186 (269)
Q Consensus 135 ~aD~FV~ev~d~L~~ik~E~vLl-hY----L~~~~~l-------kg~e----L~~tT~~r------------LqscLYSf 186 (269)
+-|+ .|++++ +++.+|+|+- |. +=.+.+| -|++ .+..++-| -|+|+|..
T Consensus 97 GpDL--~~va~~-~gls~~evI~~Hs~~~Y~V~~lGf~pGFpyl~gld~rL~~PRr~~PR~~iPaGSVgIag~qtgIYp~ 173 (223)
T COG2049 97 GPDL--AEVARH-NGLSVEEVIELHSSTEYRVYMLGFAPGFPYLGGLDERLATPRRAEPRTSIPAGSVGIAGAQTGIYPS 173 (223)
T ss_pred CCCH--HHHHHH-cCCCHHHHHHHhcCCceEEEEEccCCCcccccCCCccccCCCCCCCccccCCCceEEcCceeEEecc
Confidence 4453 688888 8999999986 32 2222222 1222 22222222 38999999
Q ss_pred CCCCC
Q 024351 187 TSPGG 191 (269)
Q Consensus 187 TsPGg 191 (269)
+||||
T Consensus 174 ~sPGG 178 (223)
T COG2049 174 ASPGG 178 (223)
T ss_pred CCCCc
Confidence 99998
No 21
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=21.38 E-value=77 Score=28.05 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=15.5
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDAL 207 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~L 207 (269)
.|+|||+.|++|. ..|.|+=+
T Consensus 66 l~~~GG~~y~~~r-~~aC~RD~ 86 (169)
T CHL00089 66 LLRPGGNAYTTRR-YAACLRDI 86 (169)
T ss_pred ccCCCCCCcchHH-HHHHHHHH
Confidence 5889999999997 44555443
No 22
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=21.26 E-value=77 Score=30.47 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=60.8
Q ss_pred hhHHHHHhhCCCCCCccccc--CCcchhHHHHHHHhhhhcchhHHH-------HHHHHhhhhcCCccccchhhhHhhhhh
Q 024351 114 DKLESFLKQFPVFPNAFLVG--GSADFFVIEVADQLQKLKVEPVLL-------HYLSQIKVLQGMELRMTTSTRLKTCLY 184 (269)
Q Consensus 114 ~~l~~fl~~fp~~pn~~l~g--g~aD~FV~ev~d~L~~ik~E~vLl-------hYL~~~~~lkg~eL~~tT~~rLqscLY 184 (269)
-.|+++++.+|... .++. .+.+-....+++.+++...+.+.+ ..|.+++-+- -+++.+++...+.|+.
T Consensus 143 PTL~EvL~~~~~~~--l~IEiK~~~~~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~-P~~~~~s~~~~~~~~~ 219 (309)
T cd08613 143 PTLDEVFAAFPDRR--FLINFKSDDAAEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELT-PDLRTLSKASMKDCLI 219 (309)
T ss_pred cCHHHHHHhcCCCc--EEEEeCCCCccHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHC-CCCceecccchHHHHH
Confidence 47889998886521 1111 122334566667776666553321 1133333221 3678888899999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHH
Q 024351 185 SFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRH 219 (269)
Q Consensus 185 SfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~~~Rh 219 (269)
.+-..|..-|.|.+.|+.+- .-|. +|.++
T Consensus 220 ~~~~~~~~g~~p~~~~~~~~-----~vP~-~~~~~ 248 (309)
T cd08613 220 EYLALGWTGYVPDSCRNTTL-----LIPL-NYAPW 248 (309)
T ss_pred HHHhhcccccCCccccCCeE-----ecCc-cccce
Confidence 99999999999999888653 3464 66553
Done!