Query 024351
Match_columns 269
No_of_seqs 23 out of 25
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 06:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imu_A Structural polyprotein 45.7 9.7 0.00033 26.8 1.8 20 197-216 8-27 (46)
2 2qzg_A Conserved uncharacteriz 41.3 9.6 0.00033 30.2 1.3 41 175-215 12-52 (94)
3 2qsb_A UPF0147 protein TA0600; 37.8 14 0.00047 29.1 1.7 40 176-215 9-48 (89)
4 3b2a_A TON_1937, putative unch 28.3 95 0.0033 28.5 5.8 75 149-229 85-160 (265)
5 2j96_A Phycoerythrocyanin alph 27.0 32 0.0011 28.5 2.4 13 186-198 66-78 (162)
6 3o18_A C-phycocyanin alpha sub 25.7 30 0.001 28.8 1.9 22 186-207 66-88 (162)
7 1kn1_B Allophycocyanin; helix- 23.4 40 0.0014 27.9 2.2 22 186-208 65-86 (161)
8 1v54_H AED, cytochrome C oxida 23.0 35 0.0012 26.0 1.7 25 187-211 13-37 (85)
9 1kn1_A Allophycocyanin; helix- 22.7 53 0.0018 27.2 2.9 21 186-207 64-84 (160)
10 3l0f_B C-phycocyanin beta chai 21.3 48 0.0016 27.9 2.3 22 186-208 66-87 (172)
No 1
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=45.69 E-value=9.7 Score=26.81 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.8
Q ss_pred hHHHHHHHHhhhhhcCCCCc
Q 024351 197 RAVRHAAWDALDFLFPVGQY 216 (269)
Q Consensus 197 R~VR~aA~~~LD~LFP~G~~ 216 (269)
|++|+.|.-++|-|||..+=
T Consensus 8 r~irr~a~PVvsTlfP~Aap 27 (46)
T 2imu_A 8 RAIRRIAVPVVSTLFPPAAP 27 (46)
T ss_dssp HHHHHHSHHHHHHHCSSTTH
T ss_pred HHHHHhhhhhhhccCCCcch
Confidence 78999999999999997653
No 2
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=41.27 E-value=9.6 Score=30.23 Aligned_cols=41 Identities=22% Similarity=0.100 Sum_probs=28.6
Q ss_pred hhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 024351 175 TSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 215 (269)
Q Consensus 175 T~~rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~ 215 (269)
+..++|.|++=+..--.=.=+||-+|+||-++.+.|-=.+.
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 52 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQ 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTS
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 34455555555444444455899999999999999987654
No 3
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=37.83 E-value=14 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=28.7
Q ss_pred hhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCC
Q 024351 176 STRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQ 215 (269)
Q Consensus 176 ~~rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~ 215 (269)
..++|.|++=+..=-.=.=.||-+|+||-++.+.|.=.+.
T Consensus 9 e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~ 48 (89)
T 2qsb_A 9 QNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCc
Confidence 3456666665544444455899999999999999987654
No 4
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.34 E-value=95 Score=28.49 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=63.0
Q ss_pred hhcchhHHHHHHHHhhhh-cCCccccchhhhHhhhhhccCCCCCCCCCChHHHHHHHHhhhhhcCCCCccHHHHHHHHHh
Q 024351 149 KLKVEPVLLHYLSQIKVL-QGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRL 227 (269)
Q Consensus 149 ~ik~E~vLlhYL~~~~~l-kg~eL~~tT~~rLqscLYSfTsPGgP~y~~R~VR~aA~~~LD~LFP~G~~~Rh~vslfFRL 227 (269)
+=+.|.|.++=+..++.+ .|.++..-|=+|+-.+|=+.-+-|.+ .+|-.|-++|+.| ++-..+|.++++.|||
T Consensus 85 k~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~-----il~~eaae~Lgkl-kv~~~~~~V~~~l~sL 158 (265)
T 3b2a_A 85 SQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDD-----MMRIETIDVLSKL-QPLEDSKLVRTYINEL 158 (265)
T ss_dssp CSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCH-----HHHHHHHHHHHHC-CBSCCCHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCc-----hHHHHHHHHhCcC-CcccchHHHHHHHHHH
Confidence 447788888888877554 89999999999999999887664332 4889999999999 8888899999999999
Q ss_pred hc
Q 024351 228 LY 229 (269)
Q Consensus 228 Lh 229 (269)
++
T Consensus 159 l~ 160 (265)
T 3b2a_A 159 VV 160 (265)
T ss_dssp HT
T ss_pred Hh
Confidence 96
No 5
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=27.04 E-value=32 Score=28.51 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=11.9
Q ss_pred cCCCCCCCCCChH
Q 024351 186 FTSPGGPMYPTRA 198 (269)
Q Consensus 186 fTsPGgP~y~~R~ 198 (269)
+|+|||++|++|.
T Consensus 66 l~~~ggn~y~~~~ 78 (162)
T 2j96_A 66 TTQMQGPQYASTP 78 (162)
T ss_dssp GTSSCSSSSCCSH
T ss_pred ccCCCCCCCccch
Confidence 4899999999988
No 6
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=25.74 E-value=30 Score=28.80 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.0
Q ss_pred cCCCCCCCCCChHH-HHHHHHhh
Q 024351 186 FTSPGGPMYPTRAV-RHAAWDAL 207 (269)
Q Consensus 186 fTsPGgP~y~~R~V-R~aA~~~L 207 (269)
.|+|||+.|+++.- ..|.++=+
T Consensus 66 l~~~gG~~y~~~~~~~~~C~RD~ 88 (162)
T 3o18_A 66 TTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp GGTSCSTTSSSSHHHHHHHHHHH
T ss_pred ccCCCCCCCcchhHHHHHHHHHH
Confidence 48999999999764 23444433
No 7
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=23.36 E-value=40 Score=27.91 Aligned_cols=22 Identities=50% Similarity=0.736 Sum_probs=15.6
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~LD 208 (269)
+|+|||.+|++|. ..|.++=+|
T Consensus 65 l~~pgg~~y~~~r-~~~ClRD~~ 86 (161)
T 1kn1_B 65 ITRPGGNMYTTRR-YAACIRDLD 86 (161)
T ss_dssp GGSTTSTTCSHHH-HHHHHHHHH
T ss_pred ccCCCCCCccHHH-HHHHHHHHH
Confidence 4899999999988 444444333
No 8
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=23.04 E-value=35 Score=26.04 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCCCCCCCChHHHHHHHHhhhhhc
Q 024351 187 TSPGGPMYPTRAVRHAAWDALDFLF 211 (269)
Q Consensus 187 TsPGgP~y~~R~VR~aA~~~LD~LF 211 (269)
|.|++|++|.+.=|+.-|.+=|..|
T Consensus 13 tap~D~rFPn~nq~k~Cw~~y~df~ 37 (85)
T 1v54_H 13 TAPFDSRFPNQNQTRNCWQNYLDFH 37 (85)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHH
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHH
Confidence 8999999999999999998866533
No 9
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=22.68 E-value=53 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.2
Q ss_pred cCCCCCCCCCChHHHHHHHHhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDAL 207 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~L 207 (269)
+++|||.+|++|. ..|.++=+
T Consensus 64 l~~~gg~~y~~~~-~~~ClRD~ 84 (160)
T 1kn1_A 64 VVSPGGNAYGEEM-TATCLRDL 84 (160)
T ss_dssp TSSSSCSSCSTTH-HHHHHHHH
T ss_pred ccCCCCCcccHHH-HHHHHHHH
Confidence 3899999999988 44444433
No 10
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=21.27 E-value=48 Score=27.91 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=16.0
Q ss_pred cCCCCCCCCCChHHHHHHHHhhh
Q 024351 186 FTSPGGPMYPTRAVRHAAWDALD 208 (269)
Q Consensus 186 fTsPGgP~y~~R~VR~aA~~~LD 208 (269)
.|+|||++|++|. ..|.++=+|
T Consensus 66 l~~~gg~~y~~~~-~~~C~RD~~ 87 (172)
T 3l0f_B 66 LIQPGGNAYTNRR-MAACLRDME 87 (172)
T ss_dssp GTSTTSTTCSHHH-HHHHHHHHH
T ss_pred CCCCCCCCCcHHH-HHHHHHHHH
Confidence 4889999999887 355555443
Done!