BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024352
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
           Escherichia Coli
          Length = 206

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 179 HPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA-LDPNSTEI 229
           +P++    D+I+L  +DLG+   + R Y  ++++EGF  S     D N+  I
Sbjct: 128 YPEIRDAADHIYL-SQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNI 178


>pdb|3QK6|A Chain A, Crystal Structure Of Escherichia Coli Phnd
 pdb|3QK6|B Chain B, Crystal Structure Of Escherichia Coli Phnd
 pdb|3QUJ|A Chain A, Crystal Structure Of The Phosphonate Binding Protein,
           Phnd, From Escherichia Coli
 pdb|3QUJ|B Chain B, Crystal Structure Of The Phosphonate Binding Protein,
           Phnd, From Escherichia Coli
 pdb|3QUJ|C Chain C, Crystal Structure Of The Phosphonate Binding Protein,
           Phnd, From Escherichia Coli
 pdb|3QUJ|D Chain D, Crystal Structure Of The Phosphonate Binding Protein,
           Phnd, From Escherichia Coli
          Length = 321

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 71  SSGRLKSLPRGIVQARSDLELRPLWST--SSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
           S  + K+L  GI+   S   L+P W+       KK GV  N       AGI Q       
Sbjct: 9   SEEQEKALNFGIISTESQQNLKPQWTPFLQDXEKKLGVKVNAFFAPDYAGIIQG------ 62

Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
                   F  +   + G+++A   +D +N  +    +AA     +W          ++N
Sbjct: 63  ------XRFNKVDIAWYGNLSAXEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116

Query: 186 YDYIFLWDEDLGVENFDP 203
            + +    +DL   N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDP 134


>pdb|3P7I|A Chain A, Crystal Structure Of Escherichia Coli Phnd In Complex With
           2- Aminoethyl Phosphonate
          Length = 321

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 71  SSGRLKSLPRGIVQARSDLELRPLWST--SSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
           S  + K+L  GI+   S   L+P W+       KK GV  N       AGI Q       
Sbjct: 9   SEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQG------ 62

Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
                   F  +   + G+++A   +D +N  +    +AA     +W          ++N
Sbjct: 63  ------MRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116

Query: 186 YDYIFLWDEDLGVENFDP 203
            + +    +DL   N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDP 134


>pdb|3S4U|A Chain A, Crystal Structure Of Open, Unliganded E. Coli Phnd H157a
          Length = 321

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 71  SSGRLKSLPRGIVQARSDLELRPLWST--SSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
           S  + K+L  GI+   S   L+P W+       KK GV  N       AGI Q       
Sbjct: 9   SEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQG------ 62

Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
                   F  +   + G+++A   +D +N  +    +AA     +W          ++N
Sbjct: 63  ------MRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116

Query: 186 YDYIFLWDEDLGVENFDP 203
            + +    +DL   N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDP 134


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,364,610
Number of Sequences: 62578
Number of extensions: 344709
Number of successful extensions: 648
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 6
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)