BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024352
         (269 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B4N549|QTRD1_DROWI Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog
           OS=Drosophila willistoni GN=GK20504 PE=3 SV=1
          Length = 428

 Score = 32.3 bits (72), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 197 GVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRA---RTKKFHRRVYDLRGSV 253
           G E+  P RY+EI+ S   +I Q   D ++     K  ++    RT++F   +Y+  G +
Sbjct: 128 GKESLTPERYMEIIASFKPDIYQGLCDADTNLESSKKRVQKSVDRTERFMDYIYEQHGKL 187

Query: 254 KCTNISEGPPCTG 266
           + T+ S   P  G
Sbjct: 188 QSTSSSLLAPIVG 200


>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
           discoideum GN=psmD2 PE=1 SV=1
          Length = 893

 Score = 32.0 bits (71), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 163 IAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLGVENFDPRRY 206
           + A+  TKWWF  R L     V++   + LWD D G+   D   Y
Sbjct: 393 MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLY 437


>sp|B4H1X9|QTRD1_DROPE Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog
           OS=Drosophila persimilis GN=GL17966 PE=3 SV=1
          Length = 417

 Score = 31.2 bits (69), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 197 GVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRA---RTKKFHRRVYDLRGSV 253
           G E+  P+RY+E+V S   +I Q   D ++     K  ++    RT+KF   +Y+ +  V
Sbjct: 123 GKESLSPKRYMEMVASLRPDIYQGLCDADTNAESAKKRVQKSVDRTEKFMHYIYEHKSKV 182

Query: 254 KCTNISEGPPCTGY 267
             T ++  P   GY
Sbjct: 183 DSTLLA--PIVGGY 194


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,081,734
Number of Sequences: 539616
Number of extensions: 4138688
Number of successful extensions: 7728
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7727
Number of HSP's gapped (non-prelim): 11
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)