Query 024352
Match_columns 269
No_of_seqs 104 out of 121
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 06:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nrg_A Intrinsic membrane prot 26.3 57 0.002 25.3 3.4 13 70-82 63-75 (82)
2 3sd4_A PHD finger protein 20; 25.4 35 0.0012 24.3 2.0 23 140-162 43-66 (69)
3 1vmb_A 30S ribosomal protein S 24.5 22 0.00075 29.2 0.9 61 176-237 11-74 (140)
4 4dix_A Plectin-related protein 23.6 72 0.0025 28.8 4.0 44 124-175 106-149 (230)
5 2nsc_A Trigger factor, TF; cha 21.7 32 0.0011 26.3 1.2 20 203-224 72-91 (109)
6 2eqm_A PHD finger protein 20-l 21.7 46 0.0016 25.2 2.1 24 139-162 49-73 (88)
7 3abi_A Putative uncharacterize 20.8 16 0.00055 32.4 -0.7 26 194-219 339-364 (365)
8 3t91_A Stage II sporulation pr 19.7 83 0.0028 25.6 3.4 26 134-159 209-234 (242)
9 3shw_A Tight junction protein 19.5 1E+02 0.0036 29.5 4.5 63 112-177 75-142 (468)
10 2kjw_A TS9, 30S ribosomal prot 19.2 34 0.0012 26.5 0.9 60 148-219 19-81 (96)
No 1
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=26.31 E-value=57 Score=25.30 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=8.9
Q ss_pred cCCCCcCCCCCCc
Q 024352 70 FSSGRLKSLPRGI 82 (269)
Q Consensus 70 ~~p~g~e~LP~GI 82 (269)
..|..+.+|-.||
T Consensus 63 P~P~~~~~~~~~~ 75 (82)
T 2nrg_A 63 PAPNITGALETGI 75 (82)
T ss_dssp SSSSSCSSSSSSC
T ss_pred CCCccchhHHHHH
Confidence 3467777777776
No 2
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=25.42 E-value=35 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=13.9
Q ss_pred EEEeeeCccccccc-cccCCceEE
Q 024352 140 ILFHYDGDVNAWRG-LDWSNKAIH 162 (269)
Q Consensus 140 mLFHYDG~vd~W~d-leWS~~aIH 162 (269)
+|.||||--+.|++ +.+...-||
T Consensus 43 ~~VhfdGw~~~~D~W~~~dS~~i~ 66 (69)
T 3sd4_A 43 VLIHFKRWNHRYDEWFCWDSPYLR 66 (69)
T ss_dssp EEEEETTSCGGGCEEEETTCTTEE
T ss_pred EEEEeCCCCCCCCEEEcCCCCCee
Confidence 59999996555554 334444444
No 3
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=24.51 E-value=22 Score=29.19 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=40.0
Q ss_pred ccCCCccccccceEEEeeccccCCCCCh--hHHHHHHHHh-CCccccCccCCCCCceeeeeeeec
Q 024352 176 RFLHPDVVSNYDYIFLWDEDLGVENFDP--RRYLEIVKSE-GFEISQPALDPNSTEIHHKFTIRA 237 (269)
Q Consensus 176 RFLHPdiVa~YdYIFlWDEDLgVe~F~~--~rYl~Ivk~~-gLEISQPaLd~~~s~ihh~iT~R~ 237 (269)
..+-|+.+..||-+||-+.|+.-+...+ ++|-+++.+. |-+|-.= -+...-.+-|+|.+.+
T Consensus 11 ~~~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~v-e~wG~R~LAY~I~K~~ 74 (140)
T 1vmb_A 11 HHMAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKV-ERMGMRKFAYEIKKFN 74 (140)
T ss_dssp ------CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEETTEE
T ss_pred ccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE-EeecCcccccccCCCC
Confidence 3456899999999999999988766654 8899999999 8887531 1222334567776543
No 4
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=23.65 E-value=72 Score=28.76 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=34.7
Q ss_pred cHHHHHhhhCCCCeEEEEEeeeCccccccccccCCceEEEEEecccceeeec
Q 024352 124 NVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAK 175 (269)
Q Consensus 124 ~Vd~~V~KF~~~nF~vmLFHYDG~vd~W~dleWS~~aIHVsa~~QTKWWfAK 175 (269)
.|+++++|= ..+|.|++..+.| -+|.+.+|||.-+.-+..=+.|
T Consensus 106 yVEaL~rk~-~tEFNVvv~q~nG-------~d~~s~sihvl~vgk~RiKL~k 149 (230)
T 4dix_A 106 YVEALVRKH-DVDFNVVVTQMSG-------EDHTSESIHLFHVGKMRIKLCK 149 (230)
T ss_dssp HHHHHHTTS-EEEEEEEEEEETT-------EECCCCCEEEEEEESSEEEEEE
T ss_pred HHHHHhhcC-CCcEEEEEEEEcC-------ccCccceEEEEEeccEEEEEec
Confidence 499999997 6899999999999 4678889999876655544433
No 5
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=21.72 E-value=32 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.7
Q ss_pred hhHHHHHHHHhCCccccCccCC
Q 024352 203 PRRYLEIVKSEGFEISQPALDP 224 (269)
Q Consensus 203 ~~rYl~Ivk~~gLEISQPaLd~ 224 (269)
++ |-+.+++++| ++||-+|.
T Consensus 72 ~~-~~~ai~e~~l-~~~P~i~~ 91 (109)
T 2nsc_A 72 DL-IPDTLKDRKL-ILSPIVTE 91 (109)
T ss_dssp TT-HHHHTTTSCC-SSCCCCCC
T ss_pred HH-HHHHHHHcCc-CCCCcccc
Confidence 45 8899999999 99999885
No 6
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=21.66 E-value=46 Score=25.20 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=16.5
Q ss_pred EEEEeeeCccccccc-cccCCceEE
Q 024352 139 VILFHYDGDVNAWRG-LDWSNKAIH 162 (269)
Q Consensus 139 vmLFHYDG~vd~W~d-leWS~~aIH 162 (269)
-+|.||||--+.|++ .+++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 379999997666665 555555555
No 7
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.81 E-value=16 Score=32.37 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.9
Q ss_pred ccccCCCCChhHHHHHHHHhCCcccc
Q 024352 194 EDLGVENFDPRRYLEIVKSEGFEISQ 219 (269)
Q Consensus 194 EDLgVe~F~~~rYl~Ivk~~gLEISQ 219 (269)
|.++.+.++++++|+-++++|++|..
T Consensus 339 E~l~~~~~~~~~~l~~L~~~GI~I~e 364 (365)
T 3abi_A 339 EILGMREDTFRRIIDELKERGISIEG 364 (365)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTCCEEC
T ss_pred hhcccchhhHHHHHHHHHHCCCeeee
Confidence 67778888899999999999999864
No 8
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=19.73 E-value=83 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=17.2
Q ss_pred CCCeEEEEEeeeCccccccccccCCc
Q 024352 134 PENFTVILFHYDGDVNAWRGLDWSNK 159 (269)
Q Consensus 134 ~~nF~vmLFHYDG~vd~W~dleWS~~ 159 (269)
.+|.|++++.+.+...+|..++|.+.
T Consensus 209 ~DDiTvv~i~~~~~~~~~~~~~~~~~ 234 (242)
T 3t91_A 209 EDDMTVVVVRIDHNTPKWASIPVPAI 234 (242)
T ss_dssp CSCEEEEEEEEEECCCCC--------
T ss_pred CCceEEEEEEEecCCCcceeecCchH
Confidence 59999999999999999999988764
No 9
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=19.48 E-value=1e+02 Score=29.51 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=38.2
Q ss_pred EEEEeecccccccHHHHHhhhCCCCeEE-EEEeeeCccccccccccCCc-eEEEEEe---cccceeeeccc
Q 024352 112 LLAIPAGIKQKDNVDAIVRKFLPENFTV-ILFHYDGDVNAWRGLDWSNK-AIHIAAQ---NQTKWWFAKRF 177 (269)
Q Consensus 112 LlamaVGikQK~~Vd~~V~KF~~~nF~v-mLFHYDG~vd~W~dleWS~~-aIHVsa~---~QTKWWfAKRF 177 (269)
-+.+.|=- +.+...++++.=+.+.|.| .+|+|++... .+|..... .+||.-. ...-||.|+|-
T Consensus 75 ~v~L~V~r-~g~~~~~~~~~~~g~s~yVralfdy~~~~~--~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~ 142 (468)
T 3shw_A 75 EVTILAQK-KKDVYRRIVESDVGDSFYIRTHFEYEKESP--YGLSFNKGEVFRVVDTLYNGKLGSWLAIRI 142 (468)
T ss_dssp EEEEEEEE-CHHHHHHHHHHTCCCCEEEEECSCBCCSST--TBCCBCTTCEEEEEESSGGGCTTEEEEEEE
T ss_pred EEEEEEEE-CCccchhhhccccccccccccccCcCCCCC--CCceEccCCEEEEeecccCCCCCeEEEEEc
Confidence 34444422 2234555665434456665 9999999764 35665554 4577655 34579999984
No 10
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=19.25 E-value=34 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=44.8
Q ss_pred ccccc-ccccCCceEEEEEecccceeeecccCCCccccccceEEEeeccccCCCCCh--hHHHHHHHHhCCcccc
Q 024352 148 VNAWR-GLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDP--RRYLEIVKSEGFEISQ 219 (269)
Q Consensus 148 vd~W~-dleWS~~aIHVsa~~QTKWWfAKRFLHPdiVa~YdYIFlWDEDLgVe~F~~--~rYl~Ivk~~gLEISQ 219 (269)
|.++. .+.-++..+-....+.+. +..||-+||-+.|+.=|...+ ++|-+++.++|-+|-.
T Consensus 19 v~eler~~r~~e~vlR~l~v~~e~------------Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ 81 (96)
T 2kjw_A 19 VNDLARELRIRDNVRRVMVVASTT------------PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEK 81 (96)
T ss_dssp HHHHHHHHHHCTTCSEEEEEECSS------------SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHhccchhhhhhhheehhh------------hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44553 366677777777666653 457999999999988666554 8899999999988854
Done!