BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024353
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa
Hydrolase In Complex With Quercetin
Length = 363
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 26/265 (9%)
Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
+ G+T G G+G+S HG++R+ TEK L A PE IGLFPDVG Y + G +G +L
Sbjct: 109 IHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPRLQG--KLGYFLA 166
Query: 61 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEG 120
+TG R+ D AG+ T +V S L L+E LLA+ ++I ++L Y ++ +
Sbjct: 167 LTGFRLKG-RDVYRAGIATHFVDSEKLAXLEEDLLAL--KSPSKENIASVLENYHTESKI 223
Query: 121 EAPLKLLLPQ----ITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPF 176
+ +L + I SCFS+ +V +IIE L++ SS +A E L+ + K +P
Sbjct: 224 DRDKSFILEEHXDKINSCFSA-NTVEEIIENLQQDGSS-------FALEQLKVINKXSPT 275
Query: 177 SLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQN 236
SL +T + + +S L V+ EYR++ DF EGVRAVL+DKDQ+
Sbjct: 276 SLKITLRQLXEGSS---------KTLQEVLTXEYRLSQACXRGHDFHEGVRAVLIDKDQS 326
Query: 237 PKWNPASLEEVNQSEVEALFEPLGT 261
PKW PA L+EV + ++ F+ LG+
Sbjct: 327 PKWKPADLKEVTEEDLNNHFKSLGS 351
>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From
Mycobacterium Thermoresistibile
Length = 353
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 28/241 (11%)
Query: 19 RIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 78
R+VT+ T +AMPE GIG PDVG +Y+ ++ PG +G + +TG S +DA+ G
Sbjct: 130 RVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG--KLGLHAALTGAPFSG-ADAIVMGFA 186
Query: 79 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE 138
YVP + A++A + A LA ++ +P +PL I C++ +
Sbjct: 187 DHYVPHDKIDEFTRAVIA--------DGVDAALAAHAQEPPA-SPLAEQRSWIDECYTGD 237
Query: 139 KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNE 198
+V II L+ H + A A EA + +P +L +T + + A +
Sbjct: 238 -TVADIIAALRAHDAPA-------AGEAADLIATRSPIALSVTLESVRRAA--------K 281
Query: 199 LSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFEP 258
L L ++ EYRV+ S D EG+RA LVDKD+NPKW PA+L EV +++VEA F P
Sbjct: 282 LQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWRPATLAEVTEADVEAYFAP 341
Query: 259 L 259
+
Sbjct: 342 V 342
>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
pdb|4J2U|B Chain B, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
Length = 365
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 33/258 (12%)
Query: 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 62
G T G G+G+ H R+RIV E + ++ PE IGL PDVG +++ A+ PG +G +LG+T
Sbjct: 130 GFTXGGGVGLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLARAPG--RIGVWLGLT 187
Query: 63 GKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA 122
G R P DA+FAG +VP + L AL + H + PEG
Sbjct: 188 GARXG-PGDAIFAGFADRFVPEADWPDLIAALEGGDLALPDH-----------AAPEGRL 235
Query: 123 PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 182
P+ L +I F+ + E+ + +T +A EAL+ + + +P +L T
Sbjct: 236 PV--LQDEIDRLFAG------TLAEIPARLEATDTPLAA---EALKALRRSSPLALAATL 284
Query: 183 KYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPA 242
+ ++ + G + + EYR R+ ++DF EG+RA ++DKD++P+W
Sbjct: 285 EILQRLGPSAG--------IREALDLEYRFTYRAQGQADFLEGIRAAIIDKDRSPRWRHG 336
Query: 243 SLEEVNQSEVEALFEPLG 260
E V EV +L PLG
Sbjct: 337 DPEAVRPEEVASLLAPLG 354
>pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY
PROTEIN
pdb|3JU1|B Chain B, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY
PROTEIN
Length = 407
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 34/270 (12%)
Query: 2 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGM 61
DG+ G G+G+ +++VTE + +A PE IGL+PDVG SY + P G G +LG+
Sbjct: 150 DGIVXGGGLGLXAGASHKVVTETSRIAXPEVTIGLYPDVGGSYFLNRXP--GKXGLFLGL 207
Query: 62 TGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDP---HQDIVALLAKYSSD- 117
T + +DA + GL Y+ + +A + +S+ P HQ + + + S+
Sbjct: 208 TAYHXNA-ADACYVGLADHYLNRDDKELXFDAXATLDWSDSPALNHQRLDTXINELSNQV 266
Query: 118 --PEGEAPLKLLLPQITSCFSSEKSVRQI----IEELKKHQSSAETSVAQWADEALQGMG 171
P+G++ L S++ + ++ + ++ S+ T A W +A
Sbjct: 267 DIPKGDSVLA----------ESQEXIDRLXAGSLTDIVTRXSTLSTDEA-WLSKACATXL 315
Query: 172 KGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV 231
G+P S L A + +LS L+ K+E V++ + DF EGVRA+L+
Sbjct: 316 AGSPISWHL--------AYIQTQLGTKLS-LAQCFKWELTVSVNVCAKGDFCEGVRALLI 366
Query: 232 DKDQNPKWNPASLEEVNQSEVE-ALFEPLG 260
DKD+ PKW A ++ V S +E L P G
Sbjct: 367 DKDKQPKWQFADVQSVPNSVIEDILTSPWG 396
>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 265
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
++G +G G+ ++ H RI+ E+ A+P+ G+ PD ++ G +V A L
Sbjct: 105 VNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPD-ALAHWTLPRLVGTAVAAELL 163
Query: 61 MTGKRISTPSDALFAGLGTDYVPSGN-LGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE 119
+TG S A+ GL +P+G LG+ A+ + D ++ PE
Sbjct: 164 LTGASFSA-QRAVETGLANRCLPAGKVLGA------ALRMAHDIATNVA---------PE 207
Query: 120 GEAPLKLLL--PQITSCFSSEKSVRQIIEELK 149
A K LL Q+T ++E + R+ + L+
Sbjct: 208 SAALTKRLLWDAQMTGMSAAEVAARETADHLR 239
>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
pdb|3QYR|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2
Mycobacterium Paratuberculosis Atcc Baa-968 K-10
Length = 253
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
++G + G+ ++ + I +E A +GL P G S + G G + +
Sbjct: 98 INGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMS 156
Query: 61 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 114
+TG +S +DAL AGL T+ VP L +A +A + + + ALLA Y
Sbjct: 157 LTGDYLSA-ADALRAGLVTEVVPHDQLLGAAQA-VAASIVGNNQNAVRALLASY 208
>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
Avium
Length = 270
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLG 60
++G + G+ ++ + I +E A +GL P G S + G G + +
Sbjct: 115 INGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIG-LARRMS 173
Query: 61 MTGKRISTPSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKY 114
+TG +S +DAL AGL T+ VP L A +A + + + ALL Y
Sbjct: 174 LTGDYLSA-ADALRAGLVTEVVPHDQLLGAARA-VAASIVGNNQNAVRALLTSY 225
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK---------------VASAHGKTDNELSKLSGVMKYE 209
++Q + +GA F L FS +A+ G T E+S L G KY
Sbjct: 140 HSIQALEEGAEFLLVFDDGSFSSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYI 199
Query: 210 YRVALRSSLRSDFAEG 225
+ L SL+ D EG
Sbjct: 200 FENQLPGSLKDDIVEG 215
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMK 207
++Q + +GA F L FS+ +A+ G T E+S L G K
Sbjct: 135 HSIQALEEGAEFLLVFDDGSFSENSVFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK 194
Query: 208 YEYRVALRSSLRSDFAEG 225
Y + L SL+ D EG
Sbjct: 195 YIFENQLPGSLKDDIVEG 212
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMK 207
++Q + +GA F L FS+ +A+ G T E+S L G K
Sbjct: 140 HSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK 199
Query: 208 YEYRVALRSSLRSDFAEG 225
Y + L SL+ D EG
Sbjct: 200 YIFENQLPGSLKDDIVEG 217
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMK 207
++Q + +GA F L FS+ +A+ G T E+S L G K
Sbjct: 140 HSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK 199
Query: 208 YEYRVALRSSLRSDFAEG 225
Y + L SL+ D EG
Sbjct: 200 YIFENQLPGSLKDDIVEG 217
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 166 ALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMKY 208
++Q + +GA F L FS+ +A+ G T E+S L G KY
Sbjct: 141 SIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200
Query: 209 EYRVALRSSLRSDFAEG 225
+ L SL+ D EG
Sbjct: 201 IFENQLPGSLKDDIVEG 217
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMK 207
++Q + +GA F L FS +A+ G T E+S L G K
Sbjct: 140 HSIQALEEGAEFLLVFDDGSFSANSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK 199
Query: 208 YEYRVALRSSLRSDFAEG 225
Y + L SL+ D EG
Sbjct: 200 YIFENQLPGSLKDDIVEG 217
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 87 LGSLKEA-LLAVTFSEDPHQDIVALL-AKYSSDPEGEAPLKLLLPQITSCFSSEKS 140
G+L++A + V SEDPH D++ L +Y G P +L +P C +S ++
Sbjct: 146 FGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEA 201
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 87 LGSLKEA-LLAVTFSEDPHQDIVALL-AKYSSDPEGEAPLKLLLPQITSCFSSEKS 140
G+L++A + V SEDPH D++ L +Y G P +L +P C +S ++
Sbjct: 146 FGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEA 201
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 165 EALQGMGKGAPFSLCLTQKYFSK-----------------VASAHGKTDNELSKLSGVMK 207
++Q + +GA F L F++ +A+ G T E+S L G K
Sbjct: 140 HSIQALEEGAEFLLVFDDGSFAENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEK 199
Query: 208 YEYRVALRSSLRSDFAEG 225
Y + L SL+ D EG
Sbjct: 200 YIFENQLPGSLKDDIVEG 217
>pdb|3U5C|M Chain M, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|M Chain M, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 143
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 68 TPSDALFAGLGTDYVPSGNLGSLKE---------ALLAVTFSEDPHQDIVALLAKYSSDP 118
T DAL L T V G L+E ALL V S +I+ L+ ++DP
Sbjct: 23 TIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDP 82
Query: 119 EGEAPL 124
E + PL
Sbjct: 83 ENKVPL 88
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 16 GRYRIVTE--KTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDAL 73
G Y I+ E L M + L P + ++ + + GG + + TG S+
Sbjct: 410 GTYPIIGEPPMALNTMDQFSSRLIP-INYNQLKSIDNGGTVMLSTSQFTGNFAKYNSNGN 468
Query: 74 FAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITS 133
G ++ P LG++K ++T S VA++A SDPE + P L +
Sbjct: 469 LVTDGNNWGPY--LGTIKSTTASLTLSLPDQTTQVAVVAPNFSDPEDKTPRLTLEQALVK 526
Query: 134 CFSSEK 139
F EK
Sbjct: 527 AFRLEK 532
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 188 VASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEG 225
+A+ G T E+S L G KY + L SL+ D EG
Sbjct: 180 IAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEG 217
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG 41
++G+ +G G+ + +R++ + + +PE +G++P G
Sbjct: 110 INGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFG 150
>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|B Chain B, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|C Chain C, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|D Chain D, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|E Chain E, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|F Chain F, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
Length = 266
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMT 62
GV +G G+ I L +P +GL P+ G S + K G A L T
Sbjct: 108 GVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQ-AGYHKAAELLFT 166
Query: 63 GKRISTPSDALFAGLGTDYV 82
K+ + + AL AGL + V
Sbjct: 167 AKKFNAET-ALQAGLVNEIV 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,213,422
Number of Sequences: 62578
Number of extensions: 347558
Number of successful extensions: 677
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 35
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)