Query 024353
Match_columns 268
No_of_seqs 130 out of 1302
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1684 Enoyl-CoA hydratase [L 100.0 3.9E-60 8.4E-65 431.7 16.1 251 1-268 142-393 (401)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 9.1E-54 2E-58 405.6 24.9 243 1-261 145-391 (407)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 1.2E-52 2.7E-57 396.0 22.6 244 1-262 112-359 (381)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 8.2E-51 1.8E-55 385.3 23.8 249 1-267 140-392 (401)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 4.3E-47 9.3E-52 358.7 21.1 243 1-261 112-358 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 1.2E-46 2.7E-51 351.3 18.7 236 1-258 107-342 (342)
7 PRK08252 enoyl-CoA hydratase; 100.0 2.7E-32 5.9E-37 244.9 17.4 156 1-241 98-253 (254)
8 PLN02600 enoyl-CoA hydratase 100.0 2.8E-32 6E-37 244.5 16.9 156 1-241 95-250 (251)
9 PRK06494 enoyl-CoA hydratase; 100.0 3.2E-32 7E-37 245.1 16.7 156 1-241 101-258 (259)
10 PRK09076 enoyl-CoA hydratase; 100.0 3.9E-32 8.4E-37 244.4 17.0 156 1-241 102-257 (258)
11 PRK07799 enoyl-CoA hydratase; 100.0 3.9E-32 8.6E-37 244.9 16.9 157 1-242 107-263 (263)
12 PRK05809 3-hydroxybutyryl-CoA 100.0 4.3E-32 9.2E-37 244.2 16.8 156 1-241 104-259 (260)
13 PRK07658 enoyl-CoA hydratase; 100.0 5.4E-32 1.2E-36 243.0 16.5 156 1-241 101-256 (257)
14 PRK05862 enoyl-CoA hydratase; 100.0 6.5E-32 1.4E-36 242.7 17.0 156 1-241 101-256 (257)
15 PRK08150 enoyl-CoA hydratase; 100.0 8.4E-32 1.8E-36 242.0 17.1 156 1-241 99-254 (255)
16 PRK09674 enoyl-CoA hydratase-i 100.0 9.5E-32 2.1E-36 241.5 16.8 156 1-241 99-254 (255)
17 PLN02664 enoyl-CoA hydratase/d 100.0 8E-32 1.7E-36 244.5 16.5 156 1-241 118-274 (275)
18 TIGR02280 PaaB1 phenylacetate 100.0 9.8E-32 2.1E-36 241.5 16.5 156 1-241 100-255 (256)
19 PRK05980 enoyl-CoA hydratase; 100.0 1.1E-31 2.4E-36 241.6 15.9 154 1-239 107-260 (260)
20 PRK07657 enoyl-CoA hydratase; 100.0 1.7E-31 3.6E-36 240.4 16.5 156 1-241 104-259 (260)
21 PRK06142 enoyl-CoA hydratase; 100.0 1.4E-31 3E-36 242.5 15.8 156 1-241 116-272 (272)
22 PRK06127 enoyl-CoA hydratase; 100.0 1.8E-31 3.9E-36 241.5 16.4 156 1-241 113-268 (269)
23 PRK09245 enoyl-CoA hydratase; 100.0 1.7E-31 3.8E-36 241.0 16.1 156 1-241 110-265 (266)
24 PRK06563 enoyl-CoA hydratase; 100.0 1.8E-31 3.9E-36 239.6 15.9 156 1-241 99-254 (255)
25 PRK08258 enoyl-CoA hydratase; 100.0 3.6E-31 7.7E-36 240.5 16.5 156 1-241 120-276 (277)
26 PRK03580 carnitinyl-CoA dehydr 100.0 4.1E-31 9E-36 238.1 16.6 156 1-241 101-260 (261)
27 PRK08140 enoyl-CoA hydratase; 100.0 4.6E-31 1E-35 237.7 16.7 156 1-241 106-261 (262)
28 PRK07659 enoyl-CoA hydratase; 100.0 3.8E-31 8.2E-36 238.2 15.7 155 1-241 105-259 (260)
29 PRK08138 enoyl-CoA hydratase; 100.0 6E-31 1.3E-35 237.1 17.0 156 1-241 105-260 (261)
30 PRK08139 enoyl-CoA hydratase; 100.0 9.1E-31 2E-35 236.6 17.1 155 1-241 111-265 (266)
31 PRK05981 enoyl-CoA hydratase; 100.0 6.7E-31 1.4E-35 237.2 16.1 156 1-241 110-265 (266)
32 TIGR01929 menB naphthoate synt 100.0 7.1E-31 1.5E-35 236.4 14.8 155 1-241 104-258 (259)
33 PRK07511 enoyl-CoA hydratase; 100.0 1.6E-30 3.6E-35 233.9 16.8 155 1-240 105-259 (260)
34 PRK06210 enoyl-CoA hydratase; 100.0 1E-30 2.2E-35 236.7 15.3 156 1-241 115-271 (272)
35 PRK05995 enoyl-CoA hydratase; 100.0 1.6E-30 3.5E-35 234.2 16.2 156 1-242 106-262 (262)
36 PRK07468 enoyl-CoA hydratase; 100.0 1.8E-30 3.8E-35 234.1 16.2 155 1-241 107-261 (262)
37 PRK06688 enoyl-CoA hydratase; 100.0 2.1E-30 4.6E-35 232.8 15.8 156 1-241 103-258 (259)
38 PRK11423 methylmalonyl-CoA dec 100.0 2.8E-30 6E-35 232.9 15.0 157 1-241 103-260 (261)
39 PRK05864 enoyl-CoA hydratase; 100.0 3.4E-30 7.4E-35 234.0 15.6 157 1-242 116-275 (276)
40 PRK08260 enoyl-CoA hydratase; 100.0 3.3E-30 7.2E-35 236.3 15.4 158 1-242 120-278 (296)
41 PRK07509 enoyl-CoA hydratase; 100.0 4.6E-30 9.9E-35 231.2 15.9 153 1-240 109-261 (262)
42 PRK05674 gamma-carboxygeranoyl 100.0 3.9E-30 8.5E-35 232.4 14.6 155 1-241 108-263 (265)
43 PRK07396 dihydroxynaphthoic ac 100.0 6.4E-30 1.4E-34 231.9 15.9 155 1-241 114-268 (273)
44 PRK09120 p-hydroxycinnamoyl Co 100.0 7.1E-30 1.5E-34 231.9 16.2 149 1-233 111-262 (275)
45 PRK06495 enoyl-CoA hydratase; 100.0 6.9E-30 1.5E-34 229.7 15.9 153 1-241 104-256 (257)
46 TIGR03210 badI 2-ketocyclohexa 100.0 7.8E-30 1.7E-34 229.3 15.7 154 1-241 101-255 (256)
47 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.2E-29 2.6E-34 227.6 16.5 154 1-241 96-250 (251)
48 PRK07327 enoyl-CoA hydratase; 100.0 8.1E-30 1.8E-34 230.6 15.3 155 1-241 113-267 (268)
49 PRK08259 enoyl-CoA hydratase; 100.0 9.9E-30 2.1E-34 228.4 15.4 152 1-237 100-251 (254)
50 KOG1680 Enoyl-CoA hydratase [L 100.0 5.1E-30 1.1E-34 228.0 12.8 156 1-241 134-289 (290)
51 PRK07854 enoyl-CoA hydratase; 100.0 2.6E-29 5.5E-34 224.4 16.7 150 1-241 93-242 (243)
52 PRK06143 enoyl-CoA hydratase; 100.0 1.9E-29 4.1E-34 226.9 15.7 148 1-233 107-254 (256)
53 PRK07260 enoyl-CoA hydratase; 100.0 1.9E-29 4.1E-34 226.5 15.5 149 1-233 105-253 (255)
54 PRK06072 enoyl-CoA hydratase; 100.0 3.3E-29 7.2E-34 224.2 16.8 152 1-241 96-247 (248)
55 PLN02921 naphthoate synthase 100.0 3.1E-29 6.7E-34 232.9 16.4 155 1-241 168-322 (327)
56 PRK08321 naphthoate synthase; 100.0 3.9E-29 8.5E-34 229.9 16.3 155 1-241 142-297 (302)
57 PLN02888 enoyl-CoA hydratase 100.0 5.9E-29 1.3E-33 224.8 16.4 153 1-238 106-260 (265)
58 PRK07938 enoyl-CoA hydratase; 100.0 3.7E-29 8.1E-34 224.1 14.9 149 1-237 101-249 (249)
59 PRK06144 enoyl-CoA hydratase; 100.0 3.8E-29 8.3E-34 225.5 15.0 152 1-241 109-261 (262)
60 COG1024 CaiD Enoyl-CoA hydrata 100.0 6E-29 1.3E-33 223.4 15.4 152 1-239 105-257 (257)
61 PRK07827 enoyl-CoA hydratase; 100.0 5.2E-29 1.1E-33 224.3 14.8 152 1-240 108-259 (260)
62 PF00378 ECH: Enoyl-CoA hydrat 100.0 5.8E-29 1.3E-33 221.5 13.1 149 1-233 97-245 (245)
63 PRK06023 enoyl-CoA hydratase; 100.0 1.1E-28 2.5E-33 221.1 15.0 146 1-230 104-249 (251)
64 PRK07112 polyketide biosynthes 100.0 1.6E-28 3.4E-33 220.7 15.4 152 1-241 103-254 (255)
65 PLN03214 probable enoyl-CoA hy 100.0 9.5E-29 2.1E-33 224.9 13.7 149 1-233 114-263 (278)
66 PRK12478 enoyl-CoA hydratase; 100.0 2E-28 4.2E-33 224.9 14.3 155 1-243 119-282 (298)
67 PRK05870 enoyl-CoA hydratase; 100.0 1.9E-28 4.1E-33 219.4 13.1 145 1-230 102-247 (249)
68 TIGR03222 benzo_boxC benzoyl-C 100.0 3.9E-28 8.4E-33 238.1 14.4 157 1-242 373-544 (546)
69 PF13766 ECH_C: 2-enoyl-CoA Hy 100.0 4.9E-28 1.1E-32 193.9 11.9 117 124-257 2-118 (118)
70 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.2E-28 9E-33 238.3 13.4 157 1-242 376-548 (550)
71 PRK07110 polyketide biosynthes 99.9 2.7E-27 5.8E-32 212.1 15.4 147 1-230 101-247 (249)
72 PRK06190 enoyl-CoA hydratase; 99.9 1.1E-25 2.3E-30 202.9 15.5 136 1-219 101-236 (258)
73 KOG1679 Enoyl-CoA hydratase [L 99.9 2.8E-26 6.1E-31 197.5 6.6 160 1-241 131-290 (291)
74 PRK11730 fadB multifunctional 99.9 1E-24 2.2E-29 221.1 14.9 179 1-232 109-296 (715)
75 PRK11154 fadJ multifunctional 99.9 2.9E-24 6.3E-29 217.6 15.6 183 1-233 108-294 (708)
76 PRK05869 enoyl-CoA hydratase; 99.9 5.7E-24 1.2E-28 187.7 11.3 115 1-189 106-220 (222)
77 PRK08788 enoyl-CoA hydratase; 99.9 1.1E-23 2.4E-28 192.5 12.9 146 1-230 128-274 (287)
78 TIGR02440 FadJ fatty oxidation 99.9 1.9E-23 4.1E-28 211.3 15.3 184 1-233 103-289 (699)
79 PRK08290 enoyl-CoA hydratase; 99.9 3.6E-23 7.8E-28 189.2 12.9 137 1-221 125-262 (288)
80 PRK06213 enoyl-CoA hydratase; 99.9 4.2E-23 9.1E-28 182.6 10.5 129 1-212 98-227 (229)
81 TIGR02437 FadB fatty oxidation 99.9 9.6E-22 2.1E-26 199.2 14.2 185 1-233 109-297 (714)
82 TIGR03200 dearomat_oah 6-oxocy 99.9 2.2E-21 4.7E-26 180.8 15.3 192 1-230 131-326 (360)
83 KOG1681 Enoyl-CoA isomerase [L 99.9 1.8E-22 4E-27 175.3 7.0 158 1-240 133-290 (292)
84 PRK08272 enoyl-CoA hydratase; 99.9 2.4E-21 5.3E-26 178.1 13.3 112 1-189 134-245 (302)
85 KOG1682 Enoyl-CoA isomerase [L 99.8 9.8E-21 2.1E-25 162.3 9.4 155 1-241 132-286 (287)
86 TIGR02441 fa_ox_alpha_mit fatt 99.8 1.2E-19 2.7E-24 184.4 14.3 82 1-84 115-198 (737)
87 PLN02267 enoyl-CoA hydratase/i 99.8 1.1E-19 2.3E-24 162.2 10.1 81 1-84 101-184 (239)
88 KOG0016 Enoyl-CoA hydratase/is 99.8 9.2E-19 2E-23 154.8 11.0 149 1-232 114-262 (266)
89 cd06558 crotonase-like Crotona 99.8 1.1E-18 2.3E-23 149.5 7.6 88 1-90 100-187 (195)
90 COG0447 MenB Dihydroxynaphthoi 99.7 4.2E-19 9.2E-24 153.4 3.5 154 1-240 123-276 (282)
91 TIGR03222 benzo_boxC benzoyl-C 99.7 4.9E-18 1.1E-22 167.0 8.6 86 1-88 126-216 (546)
92 PRK08184 benzoyl-CoA-dihydrodi 99.7 6E-18 1.3E-22 166.7 8.5 87 1-89 130-221 (550)
93 cd07020 Clp_protease_NfeD_1 No 99.2 2.7E-11 5.9E-16 104.2 4.8 82 3-85 70-166 (187)
94 cd07014 S49_SppA Signal peptid 98.8 4.9E-09 1.1E-13 89.2 3.3 85 1-87 78-172 (177)
95 cd07016 S14_ClpP_1 Caseinolyti 98.6 8.6E-08 1.9E-12 80.1 6.0 80 1-81 65-160 (160)
96 TIGR00705 SppA_67K signal pept 97.9 4.2E-06 9.1E-11 83.8 2.6 81 1-83 385-510 (584)
97 cd00394 Clp_protease_like Case 97.6 7.7E-05 1.7E-09 62.1 4.7 80 1-81 64-161 (161)
98 cd07021 Clp_protease_NfeD_like 97.5 0.00019 4.2E-09 61.4 5.5 78 1-84 65-171 (178)
99 cd07019 S49_SppA_1 Signal pept 97.3 0.00011 2.4E-09 64.3 2.3 80 1-85 77-204 (211)
100 cd07022 S49_Sppa_36K_type Sign 96.6 0.0031 6.7E-08 55.3 4.9 29 1-29 80-108 (214)
101 PRK00277 clpP ATP-dependent Cl 96.2 0.0056 1.2E-07 53.3 4.0 78 1-84 96-196 (200)
102 TIGR00706 SppA_dom signal pept 95.6 0.032 7E-07 48.6 6.5 29 1-29 68-96 (207)
103 PRK12319 acetyl-CoA carboxylas 95.2 0.23 5.1E-06 45.0 10.7 71 2-85 144-215 (256)
104 cd07015 Clp_protease_NfeD Nodu 95.0 0.048 1E-06 46.5 5.4 81 3-84 70-165 (172)
105 PLN02157 3-hydroxyisobutyryl-C 94.9 0.055 1.2E-06 52.1 6.2 68 164-243 227-297 (401)
106 cd07023 S49_Sppa_N_C Signal pe 94.7 0.024 5.2E-07 49.3 2.8 29 1-29 73-101 (208)
107 PRK14512 ATP-dependent Clp pro 94.5 0.056 1.2E-06 47.0 4.7 82 1-84 88-188 (197)
108 cd07013 S14_ClpP Caseinolytic 94.5 0.051 1.1E-06 45.6 4.1 79 2-81 66-162 (162)
109 PRK12553 ATP-dependent Clp pro 94.2 0.081 1.8E-06 46.3 5.0 80 2-84 101-202 (207)
110 CHL00028 clpP ATP-dependent Cl 93.5 0.14 3E-06 44.7 5.1 82 2-85 96-197 (200)
111 PRK14514 ATP-dependent Clp pro 93.1 0.17 3.8E-06 44.8 5.2 81 2-84 120-219 (221)
112 TIGR00493 clpP ATP-dependent C 93.0 0.17 3.7E-06 43.7 4.9 81 2-83 92-190 (191)
113 PRK05724 acetyl-CoA carboxylas 92.6 0.98 2.1E-05 42.2 9.6 70 3-84 198-267 (319)
114 TIGR00513 accA acetyl-CoA carb 92.6 0.95 2.1E-05 42.3 9.5 68 3-84 198-267 (316)
115 PF00574 CLP_protease: Clp pro 92.5 0.066 1.4E-06 45.4 1.7 81 2-84 82-181 (182)
116 CHL00198 accA acetyl-CoA carbo 92.5 0.92 2E-05 42.5 9.2 71 2-84 200-270 (322)
117 PLN03229 acetyl-coenzyme A car 92.3 0.78 1.7E-05 47.2 9.1 71 2-84 288-358 (762)
118 PRK14513 ATP-dependent Clp pro 92.1 0.32 7E-06 42.5 5.4 80 2-86 93-194 (201)
119 cd07017 S14_ClpP_2 Caseinolyti 92.0 0.14 3E-06 43.3 2.9 79 2-81 75-171 (171)
120 PLN03230 acetyl-coenzyme A car 91.5 1.6 3.5E-05 42.2 9.9 70 3-84 268-337 (431)
121 TIGR03133 malonate_beta malona 91.3 0.33 7.1E-06 44.4 4.9 72 2-85 144-218 (274)
122 PRK12551 ATP-dependent Clp pro 89.9 0.57 1.2E-05 40.8 4.9 82 2-85 91-191 (196)
123 PRK12552 ATP-dependent Clp pro 86.8 1.4 3E-05 39.2 5.3 82 2-85 115-215 (222)
124 PRK07189 malonate decarboxylas 85.4 0.72 1.6E-05 42.8 2.9 28 2-29 153-182 (301)
125 CHL00174 accD acetyl-CoA carbo 79.5 3.7 8E-05 38.0 5.2 75 1-94 214-289 (296)
126 COG0740 ClpP Protease subunit 78.1 5.9 0.00013 34.6 5.7 81 3-86 94-194 (200)
127 cd07018 S49_SppA_67K_type Sign 75.9 1.9 4E-05 37.9 2.1 27 2-29 86-112 (222)
128 TIGR00515 accD acetyl-CoA carb 75.1 3.7 8.1E-05 37.8 3.9 73 2-93 201-274 (285)
129 PRK05654 acetyl-CoA carboxylas 74.8 3.4 7.3E-05 38.2 3.6 72 2-92 202-274 (292)
130 TIGR01117 mmdA methylmalonyl-C 73.7 2.7 5.9E-05 41.8 2.8 25 1-25 161-185 (512)
131 TIGR03134 malonate_gamma malon 73.0 12 0.00026 33.6 6.5 75 3-87 116-192 (238)
132 PF01972 SDH_sah: Serine dehyd 72.5 4.1 8.9E-05 37.4 3.5 40 1-40 125-164 (285)
133 PRK11778 putative inner membra 66.9 7 0.00015 36.8 3.9 29 1-29 161-189 (330)
134 PF01039 Carboxyl_trans: Carbo 60.0 6 0.00013 39.1 2.2 62 1-86 138-207 (493)
135 COG0616 SppA Periplasmic serin 57.4 6.7 0.00015 36.5 1.9 33 1-37 135-167 (317)
136 PLN02820 3-methylcrotonyl-CoA 52.4 10 0.00022 38.4 2.3 25 1-25 212-236 (569)
137 COG4565 CitB Response regulato 51.5 68 0.0015 28.5 7.1 102 68-185 88-197 (224)
138 KOG0840 ATP-dependent Clp prot 49.3 20 0.00044 32.6 3.5 62 21-84 172-257 (275)
139 PRK10949 protease 4; Provision 45.6 48 0.001 33.9 6.0 28 2-29 404-431 (618)
140 smart00250 PLEC Plectin repeat 39.8 25 0.00053 21.9 1.9 19 61-80 17-35 (38)
141 KOG0960 Mitochondrial processi 31.9 55 0.0012 31.8 3.6 58 15-75 40-97 (467)
142 COG0777 AccD Acetyl-CoA carbox 31.7 67 0.0015 29.6 4.0 68 2-89 203-272 (294)
143 PF01343 Peptidase_S49: Peptid 27.2 51 0.0011 27.0 2.4 27 2-28 14-40 (154)
144 PF00681 Plectin: Plectin repe 25.7 27 0.00058 22.7 0.3 17 62-79 18-34 (45)
145 PF13877 RPAP3_C: Potential Mo 24.7 1.6E+02 0.0036 21.7 4.6 49 131-182 36-87 (94)
146 TIGR01117 mmdA methylmalonyl-C 24.3 1.5E+02 0.0032 29.7 5.3 25 65-90 463-487 (512)
147 PF00191 Annexin: Annexin; In 23.2 2.5E+02 0.0053 19.0 7.2 44 168-228 22-65 (66)
148 PF01343 Peptidase_S49: Peptid 21.4 33 0.00073 28.1 0.2 26 60-86 117-142 (154)
No 1
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-60 Score=431.70 Aligned_cols=251 Identities=50% Similarity=0.834 Sum_probs=233.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||++||||.||+++..||||||++.|+|||+.||||||+|++|+|+|++| .+|+||+|||.+|+ |.||+..||++|
T Consensus 142 mdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg~YLgLTG~rl~-GaD~~~~GlATH 218 (401)
T KOG1684|consen 142 MDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLGLYLGLTGQRLS-GADALRCGLATH 218 (401)
T ss_pred eeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHHHhhhhccceec-chHHHHhcchhh
Confidence 799999999999999999999999999999999999999999999999999 79999999999999 799999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCc-hhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEA-PLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~-~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
|||++++..++++|. ...++++.+.++++|++|.+.+.+++ .+....++|++||+++ |+|||++.|++-+++ .++
T Consensus 219 yv~S~~l~~Lee~L~-~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~-tVeeIie~lk~~q~~--~~~ 294 (401)
T KOG1684|consen 219 YVPSEKLPSLEERLL-KNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSAN-TVEEIIEALKNYQQS--ADG 294 (401)
T ss_pred ccchhhhhHHHHHHh-hhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccc-cHHHHHHHHHHHhhh--hhH
Confidence 999999999999999 45678888999999999999975544 5667999999999988 999999999776642 345
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.+||+++++.|.+.||+||++|.++++.+. ..++++||.+||++..+...++||.|||||.||||+++|+|
T Consensus 295 ~ewak~tlk~L~k~SPtSLkvT~r~i~egs---------~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW 365 (401)
T KOG1684|consen 295 SEWAKETLKTLKKMSPTSLKVTLRQIREGS---------KQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKW 365 (401)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCC
Confidence 899999999999999999999999999987 68999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCHHHHHhhhcCCCCCCCCcCC
Q 024353 240 NPASLEEVNQSEVEALFEPLGTGVEELKV 268 (268)
Q Consensus 240 ~~~~~~~v~~~~v~~~f~p~~~~~~~~~~ 268 (268)
++.+++||+.++|+-+|.|++. ++|+|+
T Consensus 366 ~p~~l~~V~e~~Vdn~F~~~p~-~~eLkl 393 (401)
T KOG1684|consen 366 DPASLADVTEDEVDNYFKPLPS-KSELKL 393 (401)
T ss_pred CCcchhhcCHHHHHHhccCCCC-cccccC
Confidence 9999999999999999999544 777764
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.1e-54 Score=405.57 Aligned_cols=243 Identities=37% Similarity=0.629 Sum_probs=219.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|||||++|+++||||||||+++|+|||++||++||+|++|+|+|++| ..|+||+|||++++ |.||+++||+++
T Consensus 145 v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g--~~g~~L~LTG~~i~-a~eA~~~GLa~~ 221 (407)
T PLN02851 145 MDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG--YLGEYLALTGQKLN-GVEMIACGLATH 221 (407)
T ss_pred EcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcC--HHHHHHHHhCCcCC-HHHHHHCCCcee
Confidence 699999999999999999999999999999999999999999999999999 58999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCC-CCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP-EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~-~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
|||+++++.+.+.|.++.+. +...++.+|++|...+ ++.+.+..+.+.|++||+.. |++||+++|+.+... ..
T Consensus 222 ~v~~~~l~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~-sv~~I~~~L~~~~~~---~~ 295 (407)
T PLN02851 222 YCLNARLPLIEERLGKLLTD--DPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD-TVEEIIEALENEAAS---SY 295 (407)
T ss_pred ecCHhhHHHHHHHHHhhccC--CHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC-CHHHHHHHHHhcccc---cc
Confidence 99999998888888876543 3456889999997542 23345666789999999987 999999999975211 01
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhc---CChhHHHHHHHHhhcCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS---LRSDFAEGVRAVLVDKDQN 236 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~---~~~D~~eGv~a~l~~K~~~ 236 (268)
.+||+++++.|.++||+|+++|++++++++ ..++++||++|+++..+++ .++||.|||||.||||+++
T Consensus 296 ~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~---------~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LIDKd~~ 366 (407)
T PLN02851 296 DEWCKKALKKIKEASPLSLKVTLQSIREGR---------FQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLVDKDFA 366 (407)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhcCCCCC
Confidence 579999999999999999999999999988 6799999999999999987 4899999999999999999
Q ss_pred CCCCCCCcCCCCHHHHHhhhcCCCC
Q 024353 237 PKWNPASLEEVNQSEVEALFEPLGT 261 (268)
Q Consensus 237 P~w~~~~~~~v~~~~v~~~f~p~~~ 261 (268)
|+|++++++||+++.|+++|.|++.
T Consensus 367 P~W~p~sl~~V~~~~v~~~f~~~~~ 391 (407)
T PLN02851 367 PKWDPPSLGEVSKDMVDCYFTPLDE 391 (407)
T ss_pred CCCCCCChhhCCHHHHHHHhCCCCC
Confidence 9999999999999999999999854
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.2e-52 Score=395.96 Aligned_cols=244 Identities=37% Similarity=0.655 Sum_probs=217.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|||||++|+++|||||||++++|+|||+++|++||+|++++|+|++| ..|+||+|||++++ |.||+++||+++
T Consensus 112 v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G--~~~~~l~LTG~~i~-a~eA~~~GLv~~ 188 (381)
T PLN02988 112 LNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG--FFGEYVGLTGARLD-GAEMLACGLATH 188 (381)
T ss_pred ecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH--HHHHHHHHcCCCCC-HHHHHHcCCceE
Confidence 699999999999999999999999999999999999999999999999998 68999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCC-CCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~-~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+||+++++....+|.++.+. +...+..+++.|...+. +.+.+..+.+.|++||+.. |++||+++|+.+.+.. .
T Consensus 189 vv~~~~l~~~~~~la~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~-~~~~i~~~L~~~~~~~---~ 262 (381)
T PLN02988 189 FVPSTRLTALEADLCRIGSN--DPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR-TVEEIISALEREATQE---A 262 (381)
T ss_pred ecCHhHHHHHHHHHHHhhcc--CHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-CHHHHHHHHHhhcccc---c
Confidence 99999999988888765432 23447778888876542 1233445688999999988 9999999999742101 1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQN 236 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~---~~D~~eGv~a~l~~K~~~ 236 (268)
.+||+++++.|.++||+|+++|++++++++ ..++.+||++|+++..+++. ++||.|||||.||||+++
T Consensus 263 ~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~---------~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~ 333 (381)
T PLN02988 263 DGWISATIQALKKASPASLKISLRSIREGR---------LQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKN 333 (381)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhcCCCCC
Confidence 589999999999999999999999999988 67999999999999999998 699999999999999999
Q ss_pred CCCCCCCcCCCCHHHHHhhhcCCCCC
Q 024353 237 PKWNPASLEEVNQSEVEALFEPLGTG 262 (268)
Q Consensus 237 P~w~~~~~~~v~~~~v~~~f~p~~~~ 262 (268)
|+|++++++||+++.|+++|+|++.+
T Consensus 334 P~W~p~~l~~v~~~~v~~~f~~~~~~ 359 (381)
T PLN02988 334 PKWEPRRLEDMKDSMVEQYFERVEEE 359 (381)
T ss_pred CCCCCCChhhCCHHHHHHHhCCCCcc
Confidence 99999999999999999999998653
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.2e-51 Score=385.27 Aligned_cols=249 Identities=32% Similarity=0.576 Sum_probs=214.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|||||++|+++|||||||++++|+|||++||++||+|++|+|+|++| .+|+||+|||++++ |.||+++||+++
T Consensus 140 v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G--~~a~~L~LTG~~i~-A~eA~~~GLv~~ 216 (401)
T PLN02157 140 LNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG--RLGEYLGLTGLKLS-GAEMLACGLATH 216 (401)
T ss_pred EeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh--HHHHHHHHcCCcCC-HHHHHHcCCceE
Confidence 699999999999999999999999999999999999999999999999999 58999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCC-CCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~-~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+||+++++.+.+.+.++... +...+..+.+.+..... ....+....+.|+.||+.. +++||+++|+.+... +.
T Consensus 217 vVp~~~l~~~~~~~~~i~~~--~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~-d~~ei~~al~~~~~k---r~ 290 (401)
T PLN02157 217 YIRSEEIPVMEEQLKKLLTD--DPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHD-TVEEIIDSLEIEAGR---RK 290 (401)
T ss_pred EeCHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCC-CHHHHHHHHHhhhcc---cc
Confidence 99999987766655554332 23445555555543321 2234445578899999988 999999999864211 11
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQN 236 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~---~~D~~eGv~a~l~~K~~~ 236 (268)
.+||+++++.|.++||+|+++|++++++++ ..++++||++|+++..+++. ++||.|||||.||||+++
T Consensus 291 ~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~---------~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~LiDKd~~ 361 (401)
T PLN02157 291 DTWCITTLRRLKESSPLSLKVALRSIREGR---------LQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEA 361 (401)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHcCCCCC
Confidence 679999999999999999999999999988 57999999999999999886 699999999999999999
Q ss_pred CCCCCCCcCCCCHHHHHhhhcCCCCCCCCcC
Q 024353 237 PKWNPASLEEVNQSEVEALFEPLGTGVEELK 267 (268)
Q Consensus 237 P~w~~~~~~~v~~~~v~~~f~p~~~~~~~~~ 267 (268)
|+|++++++||+++.|+++|.|+.++.++++
T Consensus 362 P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~ 392 (401)
T PLN02157 362 PKWDPPSLEKVSEDMVDDYFCALTPTEPDLD 392 (401)
T ss_pred CCCCCCChhhCCHHHHHHHhCCCCCCccccc
Confidence 9999999999999999999999975555665
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.3e-47 Score=358.69 Aligned_cols=243 Identities=33% Similarity=0.639 Sum_probs=215.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|+|||+++|++|++|++++|+|++| ..+++|+|||++++ |+||+++||+++
T Consensus 112 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g--~~a~~l~ltG~~i~-a~eA~~~GLv~~ 188 (379)
T PLN02874 112 VHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG--HLGEYLALTGARLN-GKEMVACGLATH 188 (379)
T ss_pred ecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH--HHHHHHHHcCCccc-HHHHHHcCCccE
Confidence 799999999999999999999999999999999999999999999999988 68999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCC-CCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPE-GEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~-~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+||++++.++..++.+++. .+...+..+|++|..... ....+....+.|.+||+.. +++||+++|++..+..+
T Consensus 189 vv~~~~l~~~~~~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~eii~al~~~~~~~~--- 262 (379)
T PLN02874 189 FVPSEKLPELEKRLLNLNS--GDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-TVEEIIKAFESEASKTG--- 262 (379)
T ss_pred EeCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-CHHHHHHHHhhcccccc---
Confidence 9999988876667766543 345678899999986543 3345556689999999987 99999999997542211
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSL---RSDFAEGVRAVLVDKDQN 236 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~---~~D~~eGv~a~l~~K~~~ 236 (268)
.+||.+++++|+++||+|++++|++++++. ..++++++.+|+.+..+++. ++||+|||+||+++|+|+
T Consensus 263 ~~~A~~~a~~l~~~sP~al~~tk~~~~~~~---------~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~ 333 (379)
T PLN02874 263 NEWIKETLKGLRRSSPTGLKITLRSIREGR---------KQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNA 333 (379)
T ss_pred cHHHHHHHHHHHhcChHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCC
Confidence 579999999999999999999999999877 57899999999999888777 999999999998888789
Q ss_pred CCCCCCCcCCCCHHHHHhhhcCCCC
Q 024353 237 PKWNPASLEEVNQSEVEALFEPLGT 261 (268)
Q Consensus 237 P~w~~~~~~~v~~~~v~~~f~p~~~ 261 (268)
|+|+++++++|++++|+++|.|+..
T Consensus 334 P~w~~~~~~~v~~~~v~~~f~~~~~ 358 (379)
T PLN02874 334 PKWNPSTLDEVTDEKVDLVFQPFKA 358 (379)
T ss_pred CCCCCCChhhCCHHHHHHHhCCCCC
Confidence 9999999999999999999999643
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.2e-46 Score=351.34 Aligned_cols=236 Identities=42% Similarity=0.739 Sum_probs=216.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|+|||++++ |+||+++||+++
T Consensus 107 VnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g--~~a~~llltG~~i~-A~eA~~~GLv~~ 183 (342)
T PRK05617 107 MDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG--ALGTYLALTGARIS-AADALYAGLADH 183 (342)
T ss_pred EcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc--HHHHHHHHcCCCCC-HHHHHHcCCcce
Confidence 699999999999999999999999999999999999999999999999977 69999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++....+++.++++ +...+.+..+|++|...+ +..++.+....|++||+.. +++||+++|+++. .
T Consensus 184 vv~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~~~~~l~~~~-------~ 253 (342)
T PRK05617 184 FVPSADLPALLDALISLRW-DSGADVVDAALAAFATPA-PASELAAQRAWIDECFAGD-TVEDIIAALEADG-------G 253 (342)
T ss_pred ecCHHHHHHHHHHHHhcCC-ccchhHHHHHHHHhccCC-CcchhHHHHHHHHHHhCCC-CHHHHHHHHHhcc-------H
Confidence 9999988887777887776 344567888999988664 4458889999999999887 9999999999985 6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+||.+++++|+++||.+++.+|+++++.. ..++++++..|..++..++.++|++||+++|+++|+|.|+|+
T Consensus 254 ~~a~~~a~~i~~~sp~a~~~~k~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~ 324 (342)
T PRK05617 254 EFAAKTADTLRSRSPTSLKVTLEQLRRAR---------GLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWS 324 (342)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCC
Confidence 79999999999999999999999999876 578999999999999999999999999999976654799999
Q ss_pred CCCcCCCCHHHHHhhhcC
Q 024353 241 PASLEEVNQSEVEALFEP 258 (268)
Q Consensus 241 ~~~~~~v~~~~v~~~f~p 258 (268)
++|++||++++|+++|+|
T Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 325 PATLEDVTPEDVEAFFAP 342 (342)
T ss_pred CCChHhCCHHHHHHhhCC
Confidence 999999999999999998
No 7
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-32 Score=244.88 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=143.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |+||+++||+++
T Consensus 98 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 175 (254)
T PRK08252 98 VEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPY-HIAMELALTGDMLT-AERAHELGLVNR 175 (254)
T ss_pred ECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCH-HHHHHHHHcCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 176 vv~~~~l~------------------------------------------------------------------------ 183 (254)
T PRK08252 176 LTEPGQAL------------------------------------------------------------------------ 183 (254)
T ss_pred ecCcchHH------------------------------------------------------------------------
Confidence 99977642
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.|.+++++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| ++|+|.
T Consensus 184 ~~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~ 252 (254)
T PRK08252 184 DAALELAERIAANGPLAVAASKRIVVESG---------DWSEDEMFARQRELIAPVFTSADAKEGATAFA-EK-RAPVWT 252 (254)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCC
Confidence 22445558899999999999999999876 56799999999999999999999999999999 77 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 253 ~ 253 (254)
T PRK08252 253 G 253 (254)
T ss_pred C
Confidence 5
No 8
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.8e-32 Score=244.52 Aligned_cols=156 Identities=23% Similarity=0.340 Sum_probs=143.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ +++|+++||+++
T Consensus 95 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 172 (251)
T PLN02600 95 VEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGR-SRAKELIFTGRRIG-AREAASMGLVNY 172 (251)
T ss_pred ecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCH-HHHHHHHHhCCccC-HHHHHHcCCCcE
Confidence 7999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 173 vv~~~~~~------------------------------------------------------------------------ 180 (251)
T PLN02600 173 CVPAGEAY------------------------------------------------------------------------ 180 (251)
T ss_pred eeChhHHH------------------------------------------------------------------------
Confidence 99977642
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.+.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|.|+
T Consensus 181 ~~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~~ 249 (251)
T PLN02600 181 EKALELAQEINQKGPLAIKMAKKAINEGS---------EVDMASGLEIEEECYEQVLKTKDRLEGLAAFA-EK-RKPVYT 249 (251)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-cC-CCCCCC
Confidence 12344558899999999999999999765 56799999999999999999999999999999 88 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 250 ~ 250 (251)
T PLN02600 250 G 250 (251)
T ss_pred C
Confidence 5
No 9
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-32 Score=245.06 Aligned_cols=156 Identities=22% Similarity=0.331 Sum_probs=140.8
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 101 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~lll~g~~~~-a~eA~~~GLv~~ 178 (259)
T PRK06494 101 VNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGL-KRAMGMILTGRRVT-AREGLELGFVNE 178 (259)
T ss_pred ECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCH-HHHHHHHHcCCcCC-HHHHHHcCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (259)
T PRK06494 179 VVPAGELLA----------------------------------------------------------------------- 187 (259)
T ss_pred ecCHhHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHH--HHHHHHhcCChhHHHHHHHHhhcCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYE--YRVALRSSLRSDFAEGVRAVLVDKDQNPK 238 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e--~~~~~~~~~~~D~~eGv~a~l~~K~~~P~ 238 (268)
.+.+++++|+++||.+++.+|++++... ..++.+++..| ......++.++|++||+++|+ +| |+|+
T Consensus 188 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~-~k-r~p~ 255 (259)
T PRK06494 188 -AAERWADDILACSPLSIRASKQAVYRGL---------EVSLEEAITAQRDYPAVEARRASQDYIEGPKAFA-EK-RPPR 255 (259)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCC
Confidence 2333447899999999999999999876 56799999999 566777889999999999999 77 7999
Q ss_pred CCC
Q 024353 239 WNP 241 (268)
Q Consensus 239 w~~ 241 (268)
|++
T Consensus 256 ~~~ 258 (259)
T PRK06494 256 WKG 258 (259)
T ss_pred CCC
Confidence 975
No 10
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-32 Score=244.42 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=143.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 102 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 179 (258)
T PRK09076 102 INGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGE-GWAKRMILCGERVD-AATALRIGLVEE 179 (258)
T ss_pred ECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCC-HHHHHHCCCCce
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 180 vv~~~~l~~----------------------------------------------------------------------- 188 (258)
T PRK09076 180 VVEKGEARE----------------------------------------------------------------------- 188 (258)
T ss_pred ecCchhHHH-----------------------------------------------------------------------
Confidence 999876421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++... ..++.+.+..|...+..++.++|++||+++|+ +| |+|+|+
T Consensus 189 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~ 256 (258)
T PRK09076 189 -AALALAQKVANQSPSAVAACKTLIQAAR---------NGPRAAALALERELFVDLFDTEDQREGVNAFL-EK-RAPQWK 256 (258)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCC
Confidence 2344558899999999999999999876 46799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 257 ~ 257 (258)
T PRK09076 257 N 257 (258)
T ss_pred C
Confidence 5
No 11
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-32 Score=244.91 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=143.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |+||+++||+++
T Consensus 107 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 184 (263)
T PRK07799 107 VEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY-TVACDLLLTGRHIT-AAEAKEIGLIGH 184 (263)
T ss_pred ECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 185 vv~~~~l~~----------------------------------------------------------------------- 193 (263)
T PRK07799 185 VVPDGQALD----------------------------------------------------------------------- 193 (263)
T ss_pred ecCcchHHH-----------------------------------------------------------------------
Confidence 999876421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|+|.
T Consensus 194 -~a~~~a~~~~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~ 261 (263)
T PRK07799 194 -KALELAELINANGPLAVQAILRTIRETE---------GMHENEAFKIDTKIGIPVFLSEDAKEGPRAFA-EK-RAPNFQ 261 (263)
T ss_pred -HHHHHHHHHHhcChHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-cc-CCCCCC
Confidence 2334458899999999999999999876 56799999999999999999999999999999 77 799997
Q ss_pred CC
Q 024353 241 PA 242 (268)
Q Consensus 241 ~~ 242 (268)
.+
T Consensus 262 ~~ 263 (263)
T PRK07799 262 GR 263 (263)
T ss_pred CC
Confidence 53
No 12
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=4.3e-32 Score=244.22 Aligned_cols=156 Identities=23% Similarity=0.279 Sum_probs=143.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 181 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP-GKAKELIYTGDMIN-AEEALRIGLVNK 181 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHhCCCCC-HHHHHHcCCCCc
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 182 vv~~~~l~------------------------------------------------------------------------ 189 (260)
T PRK05809 182 VVEPEKLM------------------------------------------------------------------------ 189 (260)
T ss_pred ccChHHHH------------------------------------------------------------------------
Confidence 99976542
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.|.+.+++|++.||.+++.+|+++++.. ..++.+++..|......++.++|++||+++|+ +| |+|+|.
T Consensus 190 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~~-r~p~~~ 258 (260)
T PRK05809 190 EEAKALANKIAANAPIAVKLCKDAINRGM---------QVDIDTAVAIEAEDFGECFSTEDQTEGMTAFV-EK-REKNFK 258 (260)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCC
Confidence 23445558899999999999999999876 56799999999999999999999999999998 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 259 ~ 259 (260)
T PRK05809 259 N 259 (260)
T ss_pred C
Confidence 5
No 13
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=5.4e-32 Score=243.04 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=143.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 101 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 178 (257)
T PRK07658 101 IHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGK-AKALEMMLTSEPIT-GAEALKWGLVNG 178 (257)
T ss_pred EcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHcCCcCe
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 179 vv~~~~l~------------------------------------------------------------------------ 186 (257)
T PRK07658 179 VFPEETLL------------------------------------------------------------------------ 186 (257)
T ss_pred ecChhHHH------------------------------------------------------------------------
Confidence 99977643
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.|.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|+|+
T Consensus 187 ~~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~ 255 (257)
T PRK07658 187 DDAKKLAKKIAGKSPATTRAVLELLQTTK---------SSSYYEGVKREAKIFGEVFTSEDAKEGVQAFL-EK-RKPSFS 255 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCC
Confidence 12444557899999999999999999876 46799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 256 ~ 256 (257)
T PRK07658 256 G 256 (257)
T ss_pred C
Confidence 5
No 14
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=6.5e-32 Score=242.74 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=142.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 101 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 178 (257)
T PRK05862 101 VAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGK-AKAMDLCLTGRMMD-AAEAERAGLVSR 178 (257)
T ss_pred EccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccC-HHHHHHcCCCCE
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (257)
T PRK05862 179 VVPADKLLD----------------------------------------------------------------------- 187 (257)
T ss_pred eeCHhHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+.+++|++.+|.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|+
T Consensus 188 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~-~k-r~p~~~ 255 (257)
T PRK05862 188 -EALAAATTIASFSLPAVMMAKEAVNRAY---------ETTLAEGLLFERRLFHSLFATEDQKEGMAAFV-EK-RKPVFK 255 (257)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCCC
Confidence 2334447889999999999999999876 56899999999999999999999999999999 88 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 256 ~ 256 (257)
T PRK05862 256 H 256 (257)
T ss_pred C
Confidence 5
No 15
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=8.4e-32 Score=242.00 Aligned_cols=156 Identities=22% Similarity=0.278 Sum_probs=142.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 99 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 176 (255)
T PRK08150 99 LHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV-ARMTDMMLTGRVYD-AQEGERLGLAQY 176 (255)
T ss_pred ECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 177 vv~~~~l~~----------------------------------------------------------------------- 185 (255)
T PRK08150 177 LVPAGEALD----------------------------------------------------------------------- 185 (255)
T ss_pred eeCchHHHH-----------------------------------------------------------------------
Confidence 999876432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|+++||.+++.+|++++... ..++++.+..|......++.++|++||+++|+ +| |+|+|+
T Consensus 186 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-~k-r~p~~~ 253 (255)
T PRK08150 186 -KAMELARRIAQNAPLTNFAVLNALPRIA---------DMSADDGLFVESLMAAVAQSAPEAKERLRAFL-EK-KAAKVK 253 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCC
Confidence 2344458899999999999999999875 56799999999988888999999999999998 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 254 ~ 254 (255)
T PRK08150 254 P 254 (255)
T ss_pred C
Confidence 5
No 16
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.98 E-value=9.5e-32 Score=241.50 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=143.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 99 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 176 (255)
T PRK09674 99 VNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK-SLASQMVLTGESIT-AQQAQQAGLVSE 176 (255)
T ss_pred ECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 177 vv~~~~~~------------------------------------------------------------------------ 184 (255)
T PRK09674 177 VFPPELTL------------------------------------------------------------------------ 184 (255)
T ss_pred ecChHHHH------------------------------------------------------------------------
Confidence 99977642
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.|.+.+++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|.
T Consensus 185 ~~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~-~k-r~p~~~ 253 (255)
T PRK09674 185 ERALQLASKIARHSPLALRAAKQALRQSQ---------EVDLQAGLAQERQLFTLLAATEDRHEGISAFL-EK-RTPDFK 253 (255)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCC
Confidence 12344458899999999999999999876 56799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 254 ~ 254 (255)
T PRK09674 254 G 254 (255)
T ss_pred C
Confidence 5
No 17
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.98 E-value=8e-32 Score=244.55 Aligned_cols=156 Identities=20% Similarity=0.252 Sum_probs=142.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++.|. ..+++|+|||++++ |+||+++||+++
T Consensus 118 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~A~~l~ltg~~~~-a~eA~~~GLv~~ 195 (275)
T PLN02664 118 IHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY-GNAMELALTGRRFS-GSEAKELGLVSR 195 (275)
T ss_pred ECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH-HHHHHHHHhCCCCC-HHHHHHcCCCce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCC-CcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+||+ +++.
T Consensus 196 vv~~~~~l~----------------------------------------------------------------------- 204 (275)
T PLN02664 196 VFGSKEDLD----------------------------------------------------------------------- 204 (275)
T ss_pred eeCChhHHH-----------------------------------------------------------------------
Confidence 9985 4432
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
+.+.+++++|+++||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|
T Consensus 205 -~~~~~~a~~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p~~ 272 (275)
T PLN02664 205 -EGVRLIAEGIAAKSPLAVTGTKAVLLRSR---------ELSVEQGLDYVATWNSAMLVSDDLNEAVSAQI-QK-RKPVF 272 (275)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCCCC
Confidence 22444558899999999999999999876 46799999999999888999999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
.+
T Consensus 273 ~~ 274 (275)
T PLN02664 273 AK 274 (275)
T ss_pred CC
Confidence 75
No 18
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.98 E-value=9.8e-32 Score=241.47 Aligned_cols=156 Identities=24% Similarity=0.300 Sum_probs=142.8
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++.|. ..+++|+|||++++ |+||+++||+++
T Consensus 100 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 177 (256)
T TIGR02280 100 VNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGR-ARAMGLAMLGEKLD-ARTAASWGLIWQ 177 (256)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 178 vv~~~~l~~----------------------------------------------------------------------- 186 (256)
T TIGR02280 178 VVDDAALMD----------------------------------------------------------------------- 186 (256)
T ss_pred eeChHHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+.+++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|+|+
T Consensus 187 -~a~~~a~~la~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 254 (256)
T TIGR02280 187 -EAQALAVHLAAQPTRGLALTKRAIQAAA---------TNSLDTQLDLERDLQRELGRSADYAEGVTAFL-DK-RNPQFT 254 (256)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHH-cC-CCCCCC
Confidence 2334448899999999999999999876 56799999999999999999999999999998 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 255 ~ 255 (256)
T TIGR02280 255 G 255 (256)
T ss_pred C
Confidence 5
No 19
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=1.1e-31 Score=241.56 Aligned_cols=154 Identities=22% Similarity=0.280 Sum_probs=141.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 107 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 184 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGR-KRALELLLTGDAFS-AERALEIGLVNA 184 (260)
T ss_pred EcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCH-HHHHHHHHcCCccC-HHHHHHcCCCCc
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 185 vv~~~~l~~----------------------------------------------------------------------- 193 (260)
T PRK05980 185 VVPHEELLP----------------------------------------------------------------------- 193 (260)
T ss_pred ccCHHHHHH-----------------------------------------------------------------------
Confidence 999765422
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.|.+.+++|++.+|.+++.+|+++++.. ..++.+++..|......++.++|++||+++|+ +| |+|+|
T Consensus 194 -~a~~~a~~la~~~p~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~ 260 (260)
T PRK05980 194 -AARALARRIIRHSPVAVAAILTAVTRGL---------NLSIAEGLLIESEQFARMAGSADLREGLAAWI-ER-RRPAY 260 (260)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cc-CCCCC
Confidence 2344447899999999999999999876 56799999999999999999999999999999 78 78988
No 20
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.7e-31 Score=240.44 Aligned_cols=156 Identities=22% Similarity=0.279 Sum_probs=142.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |+||+++||+++
T Consensus 104 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 181 (260)
T PRK07657 104 INGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV-GRAKELIYTGRRIS-AQEAKEIGLVEF 181 (260)
T ss_pred EcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCCCC-HHHHHHcCCCCe
Confidence 6999999999999999999999999999999999999999999999999998 79999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 182 vv~~~~l~~----------------------------------------------------------------------- 190 (260)
T PRK07657 182 VVPAHLLEE----------------------------------------------------------------------- 190 (260)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++++|.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|+|+
T Consensus 191 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~~-r~~~~~ 258 (260)
T PRK07657 191 -KAIEIAEKIASNGPIAVRQAKEAISNGI---------QVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFK-EK-RKPMYK 258 (260)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCC
Confidence 2334447899999999999999999876 56799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 259 ~ 259 (260)
T PRK07657 259 G 259 (260)
T ss_pred C
Confidence 5
No 21
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.4e-31 Score=242.51 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=141.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++.|. ..+++|+|||++++ |++|+++||+++
T Consensus 116 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~-~~a~~l~l~g~~~~-a~eA~~~GLv~~ 193 (272)
T PRK06142 116 VQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGD-GHLRELALTGRDID-AAEAEKIGLVNR 193 (272)
T ss_pred ecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCH-HHHHHHHHhCCCcC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCC-CcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+||+ +++..
T Consensus 194 vv~~~~~l~~---------------------------------------------------------------------- 203 (272)
T PRK06142 194 VYDDADALLA---------------------------------------------------------------------- 203 (272)
T ss_pred ecCCHHHHHH----------------------------------------------------------------------
Confidence 9985 44321
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.+.+++++|++.||.+++.+|+++++.. ..++.+++..|......++.++|++||+++|+ +| |+|+|
T Consensus 204 --~a~~~a~~ia~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~-~k-r~p~~ 270 (272)
T PRK06142 204 --AAHATAREIAAKSPLAVRGTKEVLDYMR---------DHRVADGLRYVATWNAAMLPSKDLTEAIAAHM-EK-RPPEF 270 (272)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cC-CCCCC
Confidence 1333447899999999999999999876 56799999999999999999999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
++
T Consensus 271 ~~ 272 (272)
T PRK06142 271 TG 272 (272)
T ss_pred CC
Confidence 63
No 22
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.8e-31 Score=241.53 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=142.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||+.++ |+||+++||+++
T Consensus 113 v~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 190 (269)
T PRK06127 113 IRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGP-SAAKDLFYTARRFD-AAEALRIGLVHR 190 (269)
T ss_pred ECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHcCCCCE
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 191 vv~~~~l~~----------------------------------------------------------------------- 199 (269)
T PRK06127 191 VTAADDLET----------------------------------------------------------------------- 199 (269)
T ss_pred eeCHHHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
-|.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|.|+
T Consensus 200 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~ 267 (269)
T PRK06127 200 -ALADYAATIAGNAPLTLRAAKRAIAELL---------KDEPERDMAACQALVAACFDSEDYREGRAAFM-EK-RKPVFK 267 (269)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCCC
Confidence 1334447899999999999999999876 56789999999999999999999999999999 88 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 268 ~ 268 (269)
T PRK06127 268 G 268 (269)
T ss_pred C
Confidence 6
No 23
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.7e-31 Score=241.00 Aligned_cols=156 Identities=23% Similarity=0.314 Sum_probs=142.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 110 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 187 (266)
T PRK09245 110 VNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGM-ARAAEMAFTGDAID-AATALEWGLVSR 187 (266)
T ss_pred ECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhH-HHHHHHHHcCCCcC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 188 vv~~~~l~~----------------------------------------------------------------------- 196 (266)
T PRK09245 188 VVPADQLLP----------------------------------------------------------------------- 196 (266)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|.|+
T Consensus 197 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 264 (266)
T PRK09245 197 -AARALAERIAANPPHALRLTKRLLREGQ---------HASLDTLLELSAAYQALAHHTADHREAVDAFL-EK-RPPVFT 264 (266)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHH-cC-CCCCCC
Confidence 2334448899999999999999999876 56789999999998888999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 265 ~ 265 (266)
T PRK09245 265 G 265 (266)
T ss_pred C
Confidence 5
No 24
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.8e-31 Score=239.64 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=142.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 99 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 176 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGW-GNAMRYLLTGDEFD-AQEALRLGLVQE 176 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhH-HHHHHHHHcCCCcC-HHHHHHcCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 177 vv~~~~l~~----------------------------------------------------------------------- 185 (255)
T PRK06563 177 VVPPGEQLE----------------------------------------------------------------------- 185 (255)
T ss_pred eeCHHHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++... ..++.++++.|...+..++.++|++||+++|+ +| |+|.|+
T Consensus 186 -~a~~~a~~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 253 (255)
T PRK06563 186 -RAIELAERIARAAPLGVQATLASARAAV---------REGEAAAAAQLPPELRPLFTSEDAKEGVQAFL-ER-RPARFK 253 (255)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCC
Confidence 2333447899999999999999999765 56799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 254 ~ 254 (255)
T PRK06563 254 G 254 (255)
T ss_pred C
Confidence 5
No 25
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3.6e-31 Score=240.53 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=142.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccC-CccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~P-d~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||||||+++++|++||.++|++| ++|++++|+|+.|. ..+++|+|||++++ |+||+++||++
T Consensus 120 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~ 197 (277)
T PRK08258 120 VDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ-GRASELLYTGRSMS-AEEGERWGFFN 197 (277)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHcCCCc
Confidence 69999999999999999999999999999999999995 88999999999998 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++.+
T Consensus 198 ~vv~~~~l~~---------------------------------------------------------------------- 207 (277)
T PRK08258 198 RLVEPEELLA---------------------------------------------------------------------- 207 (277)
T ss_pred EecCHHHHHH----------------------------------------------------------------------
Confidence 9999765432
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.+.+++++|++.||.+++.+|++++... ..++++.+..|...+..++.++|++||+++|+ +| |+|.|
T Consensus 208 --~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~ 274 (277)
T PRK08258 208 --EAQALARRLAAGPTFAHGMTKTMLHQEW---------DMGLEEAIEAEAQAQAICMQTEDFRRAYEAFV-AK-RKPVF 274 (277)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCC
Confidence 2344448899999999999999998866 56799999999999999999999999999999 88 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
++
T Consensus 275 ~~ 276 (277)
T PRK08258 275 EG 276 (277)
T ss_pred CC
Confidence 75
No 26
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.97 E-value=4.1e-31 Score=238.11 Aligned_cols=156 Identities=22% Similarity=0.365 Sum_probs=140.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 101 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 178 (261)
T PRK03580 101 VNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPP-AIANEMVMTGRRMD-AEEALRWGIVNR 178 (261)
T ss_pred ECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccC-HHHHHHcCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (261)
T PRK03580 179 VVPQAELMD----------------------------------------------------------------------- 187 (261)
T ss_pred ecCHhHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHH----HHHHhcCChhHHHHHHHHhhcCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYR----VALRSSLRSDFAEGVRAVLVDKDQN 236 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~----~~~~~~~~~D~~eGv~a~l~~K~~~ 236 (268)
.|.+.+++|++.||.+++.+|++++... ..++.+++..|.. ....++.++|++||+++|+ +| |+
T Consensus 188 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~-ek-r~ 255 (261)
T PRK03580 188 -RARELAQQLVNSAPLAIAALKEIYRETS---------EMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFA-EK-RD 255 (261)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHh-cC-CC
Confidence 2334447899999999999999999876 5679999988864 5667889999999999998 88 79
Q ss_pred CCCCC
Q 024353 237 PKWNP 241 (268)
Q Consensus 237 P~w~~ 241 (268)
|+|+.
T Consensus 256 ~~~~~ 260 (261)
T PRK03580 256 PVWKG 260 (261)
T ss_pred CCCCC
Confidence 99975
No 27
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=4.6e-31 Score=237.72 Aligned_cols=156 Identities=22% Similarity=0.291 Sum_probs=142.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|. ..+++|+|||++++ |+||+++||+++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 183 (262)
T PRK08140 106 VNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM-ARALGLALLGEKLS-AEQAEQWGLIWR 183 (262)
T ss_pred ECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 184 vv~~~~l~~----------------------------------------------------------------------- 192 (262)
T PRK08140 184 VVDDAALAD----------------------------------------------------------------------- 192 (262)
T ss_pred eeChHHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|.
T Consensus 193 -~a~~~a~~ia~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k-r~p~~~ 260 (262)
T PRK08140 193 -EAQQLAAHLATQPTRGLALIKQAMNASA---------TNTLDAQLDLERDLQREAGRSADYAEGVSAFL-EK-RAPRFT 260 (262)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------hCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 2334448899999999999999999876 56799999999999998999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 261 ~ 261 (262)
T PRK08140 261 G 261 (262)
T ss_pred C
Confidence 5
No 28
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3.8e-31 Score=238.25 Aligned_cols=155 Identities=26% Similarity=0.391 Sum_probs=141.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||+.++ |++|+++||+++
T Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 182 (260)
T PRK07659 105 IHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGE-NKAKQIIWEGKKLS-ATEALDLGLIDE 182 (260)
T ss_pred ecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCH-HHHHHHHHhCCccC-HHHHHHcCChHH
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+| ++++..
T Consensus 183 vv-~~~~~~----------------------------------------------------------------------- 190 (260)
T PRK07659 183 VI-GGDFQT----------------------------------------------------------------------- 190 (260)
T ss_pred Hh-hhHHHH-----------------------------------------------------------------------
Confidence 99 555421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|+++||.+++.+|++++... ..++++.+..|......++.++|++||+++|+ +| |+|+|+
T Consensus 191 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~~ 258 (260)
T PRK07659 191 -AAKQKISEWLQKPLKAMIETKQIYCELN---------RSQLEQVLQLEKRAQYAMRQTADHKEGIRAFL-EK-RLPVFK 258 (260)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHh-cC-CCCCCC
Confidence 2344458899999999999999999876 56799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 259 ~ 259 (260)
T PRK07659 259 G 259 (260)
T ss_pred C
Confidence 5
No 29
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=6e-31 Score=237.07 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=141.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 105 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 182 (261)
T PRK08138 105 VNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK-FKAMRMALTGCMVP-APEALAIGLVSE 182 (261)
T ss_pred EccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHCCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 183 vv~~~~l~~----------------------------------------------------------------------- 191 (261)
T PRK08138 183 VVEDEQTLP----------------------------------------------------------------------- 191 (261)
T ss_pred ecCchHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|.+.+|.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|+
T Consensus 192 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~-~k-r~~~~~ 259 (261)
T PRK08138 192 -RALELAREIARMPPLALAQIKEVVLAGA---------DAPLDAALALERKAFQLLFDSEDQKEGMDAFL-EK-RKPAYK 259 (261)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCCC
Confidence 1223347788999999999999999876 56799999999999999999999999999998 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 260 ~ 260 (261)
T PRK08138 260 G 260 (261)
T ss_pred C
Confidence 5
No 30
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.97 E-value=9.1e-31 Score=236.63 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=140.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~-~~A~~l~ltg~~~~-a~eA~~~GLv~~ 187 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPR-KQAMEMLLTGEFID-AATAREWGLVNR 187 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCccE
Confidence 69999999999999999999999999999999999999875 5789999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 188 vv~~~~l~~----------------------------------------------------------------------- 196 (266)
T PRK08139 188 VVPADALDA----------------------------------------------------------------------- 196 (266)
T ss_pred eeChhHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|+++++.. ..++.+++..|......++.++|++||+++|+ +| |+|+|.
T Consensus 197 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 264 (266)
T PRK08139 197 -AVARLAAVIAAKSPAAVRIGKEAFYRQA---------EMPLADAYAYAGDVMAENMMAEDAEEGIDAFL-EK-RPPEWR 264 (266)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cC-CCCCCC
Confidence 2334448899999999999999999876 56799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 265 ~ 265 (266)
T PRK08139 265 G 265 (266)
T ss_pred C
Confidence 5
No 31
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=6.7e-31 Score=237.18 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=142.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||.++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 110 v~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 187 (266)
T PRK05981 110 VNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK-ARAMELSLLGEKLP-AETALQWGLVNR 187 (266)
T ss_pred ECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH-HHHHHHHHhCCCcC-HHHHHHcCCceE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 188 vv~~~~~~~----------------------------------------------------------------------- 196 (266)
T PRK05981 188 VVDDAELMA----------------------------------------------------------------------- 196 (266)
T ss_pred eeCHhHHHH-----------------------------------------------------------------------
Confidence 999776421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +| |+|.|+
T Consensus 197 -~a~~~a~~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~ 264 (266)
T PRK05981 197 -EAMKLAHELANGPTVALGLIRKLYWDSP---------ENDFEEQLNLEREAQRIAGKTEDFKEGVGAFL-QK-RPAQFK 264 (266)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhh---------hcCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 2334447889999999999999998765 46799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 265 ~ 265 (266)
T PRK05981 265 G 265 (266)
T ss_pred C
Confidence 5
No 32
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.97 E-value=7.1e-31 Score=236.41 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=136.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|+.|. .++++|+|||++++ |+||+++||+++
T Consensus 104 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 181 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQ-KKAREIWFLCRQYD-AEQALDMGLVNT 181 (259)
T ss_pred EcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHH-HHHHHHHHhCCccC-HHHHHHcCCccc
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 182 vv~~~~l~~----------------------------------------------------------------------- 190 (259)
T TIGR01929 182 VVPLADLEK----------------------------------------------------------------------- 190 (259)
T ss_pred ccCHHHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|++++... . .....+..|......++.++|++||+++|+ +| |+|+|+
T Consensus 191 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~ 257 (259)
T TIGR01929 191 -ETVRWCREILQKSPMAIRMLKAALNADC---------D-GQAGLQELAGNATMLFYMTEEGQEGRNAFL-EK-RQPDFS 257 (259)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------c-cchHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCC
Confidence 2334458899999999999999998754 2 234556667777788899999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 258 ~ 258 (259)
T TIGR01929 258 K 258 (259)
T ss_pred C
Confidence 4
No 33
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.6e-30 Score=233.91 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=141.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ ++||+++||+++
T Consensus 105 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 182 (260)
T PRK07511 105 VEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR-QLATELLLEGKPIS-AERLHALGVVNR 182 (260)
T ss_pred ECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCH-HHHHHHHHhCCCCC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 183 vv~~~~~~~----------------------------------------------------------------------- 191 (260)
T PRK07511 183 LAEPGQALA----------------------------------------------------------------------- 191 (260)
T ss_pred eeCchHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
-|.+.+++|+++||.+++.+|++++... ..++.+++..|......++.++|+++|+++|+ +| ++|.|.
T Consensus 192 -~a~~~a~~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~-~~-r~~~~~ 259 (260)
T PRK07511 192 -EALALADQLAAGSPNALARIKSLIADAP---------EATLAAQLEAERDHFVASLHHADALEGIAAFL-EK-RAPDYK 259 (260)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-cc-CCCCCC
Confidence 1223347889999999999999999876 56899999999999999999999999999999 77 789995
No 34
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1e-30 Score=236.73 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=140.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 115 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 192 (272)
T PRK06210 115 INGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGH-ANALDLLLSARTFY-AEEALRLGLVNR 192 (272)
T ss_pred ECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCH-HHHHHHHHcCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 193 vv~~~~l~~----------------------------------------------------------------------- 201 (272)
T PRK06210 193 VVPPDELME----------------------------------------------------------------------- 201 (272)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~-sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
-|.+.+++|+++ ||.++..+|+++++.. ..++.+.+..|......++.++|++||+++|+ +| |+|.|
T Consensus 202 -~a~~~a~~i~~~~~p~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~-~k-r~p~~ 269 (272)
T PRK06210 202 -RTLAYAEDLARNVSPASMAVIKRQLYEDA---------FQTLAEATARANREMHESLQRPDFIEGVASFL-EK-RPPRF 269 (272)
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcc---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCC
Confidence 123334788875 9999999999999875 46799999999999998999999999999999 88 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
..
T Consensus 270 ~~ 271 (272)
T PRK06210 270 PG 271 (272)
T ss_pred CC
Confidence 74
No 35
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.6e-30 Score=234.20 Aligned_cols=156 Identities=21% Similarity=0.325 Sum_probs=138.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |+++.|. .++++|+|||++++ |+||+++||+++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 182 (262)
T PRK05995 106 VHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGE-RAARRYFLTAERFD-AAEALRLGLVHE 182 (262)
T ss_pred ECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCCCe
Confidence 69999999999999999999999999999999999999988765 7788897 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 183 vv~~~~l~~----------------------------------------------------------------------- 191 (262)
T PRK05995 183 VVPAEALDA----------------------------------------------------------------------- 191 (262)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHH-HHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.+.+++++|++.||.+++.+|++++... ..++.+. +..|......++.++|++||+++|+ +| |+|.|
T Consensus 192 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-~k-r~p~~ 259 (262)
T PRK05995 192 -KVDELLAALVANSPQAVRAGKRLVRDVA---------GRPIDAALIADTASRIALIRATEEAREGVAAFL-EK-RKPAW 259 (262)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cC-CCCCC
Confidence 2344458899999999999999998765 4578887 8888888888889999999999999 78 79999
Q ss_pred CCC
Q 024353 240 NPA 242 (268)
Q Consensus 240 ~~~ 242 (268)
+++
T Consensus 260 ~~~ 262 (262)
T PRK05995 260 RGR 262 (262)
T ss_pred CCC
Confidence 864
No 36
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.8e-30 Score=234.13 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=138.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++ .|. ..+++|+|||++++ |++|+++||+++
T Consensus 107 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~-~~a~~lll~g~~~~-a~eA~~~Glv~~ 183 (262)
T PRK07468 107 IQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGE-ANARRVFMSARLFD-AEEAVRLGLLSR 183 (262)
T ss_pred ECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccH-HHHHHHHHhCCccC-HHHHHHcCCcce
Confidence 699999999999999999999999999999999999999999987766 676 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.+++.+
T Consensus 184 v~~~~~l~~----------------------------------------------------------------------- 192 (262)
T PRK07468 184 VVPAERLDA----------------------------------------------------------------------- 192 (262)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|+++++.. ...+.+++..|......++.++|++||+++|+ +| |+|+|.
T Consensus 193 -~~~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~-~k-r~~~~~ 260 (262)
T PRK07468 193 -AVEAEVTPYLSCAPGAVAAAKALVRALG---------APIDEAVIDATIEALADTWETEEAREGIAAFF-DK-RAPAWR 260 (262)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHhhh---------ccChHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cC-CCCCCC
Confidence 2334447899999999999999998765 45678899999999999999999999999999 88 799996
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
.
T Consensus 261 ~ 261 (262)
T PRK07468 261 G 261 (262)
T ss_pred C
Confidence 4
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=2.1e-30 Score=232.85 Aligned_cols=156 Identities=24% Similarity=0.358 Sum_probs=142.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ +++|+++||+++
T Consensus 103 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 180 (259)
T PRK06688 103 VNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGR-ARAAEMLLLGEPLS-AEEALRIGLVNR 180 (259)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhH-HHHHHHHHhCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
++|++++.+
T Consensus 181 v~~~~~l~~----------------------------------------------------------------------- 189 (259)
T PRK06688 181 VVPAAELDA----------------------------------------------------------------------- 189 (259)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|+++++.. ..++++++..|......++.++|+++|+++|+ +| ++|.|+
T Consensus 190 -~a~~~a~~i~~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~-~~-~~p~~~ 257 (259)
T PRK06688 190 -EADAQAAKLAAGPASALRYTKRAINAAT---------LTELEEALAREAAGFGRLLRTPDFREGATAFI-EK-RKPDFT 257 (259)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------hCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-cC-CCCCCC
Confidence 2334447899999999999999999876 56799999999999999999999999999999 77 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 258 ~ 258 (259)
T PRK06688 258 G 258 (259)
T ss_pred C
Confidence 4
No 38
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.97 E-value=2.8e-30 Score=232.88 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=139.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++.|. ..+++|+|||++++ |++|+++||+++
T Consensus 103 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~GLv~~ 180 (261)
T PRK11423 103 VEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGF-HIVKEMFFTASPIT-AQRALAVGILNH 180 (261)
T ss_pred EecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHH-HHHHHHHHcCCCcC-HHHHHHcCCcCc
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 181 vv~~~~l~------------------------------------------------------------------------ 188 (261)
T PRK11423 181 VVEVEELE------------------------------------------------------------------------ 188 (261)
T ss_pred ccCHHHHH------------------------------------------------------------------------
Confidence 99976643
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCH-HHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL-SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l-~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
+.+.+++++|++.||.+++.+|++++... ...++ .+.++.|......++.++|++||+.+|+ +| |+|+|
T Consensus 189 ~~a~~~a~~l~~~~~~a~~~~K~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~-~k-r~p~~ 258 (261)
T PRK11423 189 DFTLQMAHHISEKAPLAIAVIKEQLRVLG--------EAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFL-EK-RKPVF 258 (261)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------ccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHh-cc-CCCCC
Confidence 23455558899999999999999998643 11234 5788888888888999999999999999 88 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
++
T Consensus 259 ~~ 260 (261)
T PRK11423 259 VG 260 (261)
T ss_pred CC
Confidence 75
No 39
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3.4e-30 Score=233.98 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=136.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccC-CccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFP-DVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~P-d~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|+.|. ..+++|+|||++++ |+||+++||++
T Consensus 116 v~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~-~~A~~l~l~g~~~~-a~eA~~~Glv~ 193 (276)
T PRK05864 116 VNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGS-SRAFEIMLTGRDVD-AEEAERIGLVS 193 (276)
T ss_pred ECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCH-HHHHHHHHcCCccC-HHHHHHcCCcc
Confidence 69999999999999999999999999999999999997 78999999999998 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++.+
T Consensus 194 ~vv~~~~l~~---------------------------------------------------------------------- 203 (276)
T PRK05864 194 RQVPDEQLLD---------------------------------------------------------------------- 203 (276)
T ss_pred eeeCHHHHHH----------------------------------------------------------------------
Confidence 9999776432
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCC-CHHHHHHHHHHHHH-HhcCChhHHHHHHHHhhcCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELS-KLSGVMKYEYRVAL-RSSLRSDFAEGVRAVLVDKDQNP 237 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~-~l~~~l~~e~~~~~-~~~~~~D~~eGv~a~l~~K~~~P 237 (268)
.|.+.+++|++.||.+++.+|++++... .. ++.+++..|..... ..+.++|++||+++|+ +| |+|
T Consensus 204 --~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~-~k-r~p 270 (276)
T PRK05864 204 --TCYAIAARMAGFSRPGIELTKRTLWSGL---------DAASLEAHMQAEGLGQLFVRLLTANFEEAVAARA-EK-RPP 270 (276)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHhhc---------ccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHh-cc-CCC
Confidence 1333448899999999999999998754 33 68888888865432 3578999999999999 88 799
Q ss_pred CCCCC
Q 024353 238 KWNPA 242 (268)
Q Consensus 238 ~w~~~ 242 (268)
+|++.
T Consensus 271 ~~~~~ 275 (276)
T PRK05864 271 VFTDD 275 (276)
T ss_pred CCCCC
Confidence 99763
No 40
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3.3e-30 Score=236.28 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=135.8
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 120 v~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~A~~llltg~~~~-a~eA~~~GLv~~ 197 (296)
T PRK08260 120 VNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGL-QTALEWVYSGRVFD-AQEALDGGLVRS 197 (296)
T ss_pred ECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCH-HHHHHHHHcCCccC-HHHHHHCCCcee
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 198 vv~~~~l~~----------------------------------------------------------------------- 206 (296)
T PRK08260 198 VHPPDELLP----------------------------------------------------------------------- 206 (296)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765421
Q ss_pred HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKG-APFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~-sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.|.+++++|.++ ||.+++.+|++++.... ....+.. ...|......++.++|++||+++|+ +| |+|.|
T Consensus 207 -~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~-------~~~~~~~-~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~f 275 (296)
T PRK08260 207 -AARALAREIADNTSPVSVALTRQMMWRMAG-------ADHPMEA-HRVDSRAIYSRGRSGDGKEGVSSFL-EK-RPAVF 275 (296)
T ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHhccc-------CCCcHHH-HHHHHHHHHHHccChhHHHHHHHHh-cC-CCCCC
Confidence 133444788885 99999999999987530 0123343 3567777777889999999999999 78 79999
Q ss_pred CCC
Q 024353 240 NPA 242 (268)
Q Consensus 240 ~~~ 242 (268)
+++
T Consensus 276 ~~~ 278 (296)
T PRK08260 276 PGK 278 (296)
T ss_pred CCC
Confidence 975
No 41
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=4.6e-30 Score=231.16 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=138.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 109 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 186 (262)
T PRK07509 109 LEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK-DVARELTYTARVFS-AEEALELGLVTH 186 (262)
T ss_pred ECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHcCChhh
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+|++ +.
T Consensus 187 vv~~--~~------------------------------------------------------------------------ 192 (262)
T PRK07509 187 VSDD--PL------------------------------------------------------------------------ 192 (262)
T ss_pred hhch--HH------------------------------------------------------------------------
Confidence 9852 21
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.+.+++++|++.||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|.
T Consensus 193 ~~a~~~a~~l~~~~~~~~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek-r~p~~~ 261 (262)
T PRK07509 193 AAALALAREIAQRSPDAIAAAKRLINRSW---------TASVRALLARESVEQIRLLLGKNQKIAVKAQM-KK-RAPKFL 261 (262)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 11334447899999999999999999876 56789999999999999999999999999999 78 799996
No 42
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.97 E-value=3.9e-30 Score=232.37 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=134.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ ++|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 108 V~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 184 (265)
T PRK05674 108 VQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGE-RAARRYALTAERFD-GRRARELGLLAE 184 (265)
T ss_pred EcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCH-HHHHHHHHhCcccC-HHHHHHCCCcce
Confidence 69999999999999999999999999999999999999987765 7788887 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 185 vv~~~~l~~----------------------------------------------------------------------- 193 (265)
T PRK05674 185 SYPAAELEA----------------------------------------------------------------------- 193 (265)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHH-HHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKY-EYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~-e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.+.+.+++|+++||.+++.+|++++... ..++.+.+.. +......++.++|++||+++|+ +| ++|.|
T Consensus 194 -~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~-~k-r~p~~ 261 (265)
T PRK05674 194 -QVEAWIANLLLNSPQALRASKDLLREVG---------DGELSPALRRYCENAIARIRVSAEGQEGLRAFL-EK-RTPAW 261 (265)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhh---------ccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHH-cc-CCCCC
Confidence 2333447899999999999999999876 5667777765 4456677889999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
..
T Consensus 262 ~~ 263 (265)
T PRK05674 262 QT 263 (265)
T ss_pred CC
Confidence 74
No 43
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.97 E-value=6.4e-30 Score=231.92 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=137.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 114 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~-~~a~~l~ltg~~~~-A~eA~~~GLv~~ 191 (273)
T PRK07396 114 VAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQ-KKAREIWFLCRQYD-AQEALDMGLVNT 191 (273)
T ss_pred ECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhH-HHHHHHHHhCCCcC-HHHHHHcCCcCe
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 192 vv~~~~l~~----------------------------------------------------------------------- 200 (273)
T PRK07396 192 VVPLADLEK----------------------------------------------------------------------- 200 (273)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|++++... . .+......|......++.++|++||+++|+ +| |+|+|.
T Consensus 201 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~-~k-r~p~~~ 267 (273)
T PRK07396 201 -ETVRWCREMLQNSPMALRCLKAALNADC---------D-GQAGLQELAGNATMLFYMTEEAQEGRNAFN-EK-RQPDFS 267 (273)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------c-cHHHHHHHHHHHHHHHhcChhHHHHHHHHh-CC-CCCCCC
Confidence 2334458899999999999999998754 2 355556677777888889999999999999 78 799998
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 268 ~ 268 (273)
T PRK07396 268 K 268 (273)
T ss_pred C
Confidence 5
No 44
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.97 E-value=7.1e-30 Score=231.89 Aligned_cols=149 Identities=22% Similarity=0.243 Sum_probs=132.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 111 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~llltg~~~~-A~eA~~~Glv~~ 188 (275)
T PRK09120 111 VNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH-RDALYYIMTGETFT-GRKAAEMGLVNE 188 (275)
T ss_pred EcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH-HHHHHHHhcCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 189 vv~~~~l~~----------------------------------------------------------------------- 197 (275)
T PRK09120 189 SVPLAQLRA----------------------------------------------------------------------- 197 (275)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999876532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHH--HHHhcCCh-hHHHHHHHHhhcC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV--ALRSSLRS-DFAEGVRAVLVDK 233 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~--~~~~~~~~-D~~eGv~a~l~~K 233 (268)
.+.+++++|+++||.+++.+|++++... ..++.+.+..|... ...++.++ |++||+++|+ +|
T Consensus 198 -~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl-~k 262 (275)
T PRK09120 198 -RTRELAAKLLEKNPVVLRAAKDGFKRVR---------ELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFL-DD 262 (275)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-hc
Confidence 2344458899999999999999999876 56789998887643 34467888 9999999999 55
No 45
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=6.9e-30 Score=229.70 Aligned_cols=153 Identities=22% Similarity=0.339 Sum_probs=138.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 104 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~-~~a~~lll~g~~~~-a~eA~~~GLv~~ 178 (257)
T PRK06495 104 VNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGH-SLTRRMMLTGYRVP-AAELYRRGVIEA 178 (257)
T ss_pred ECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCH-HHHHHHHHcCCeeC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999996 567889999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~~~~----------------------------------------------------------------------- 187 (257)
T PRK06495 179 CLPPEELMP----------------------------------------------------------------------- 187 (257)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+.+++|+++||.+++.+|++++... ..++.+++..|......++.++|++||+++|+ +| |+|.|+
T Consensus 188 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~-~k-r~p~~~ 255 (257)
T PRK06495 188 -EAMEIAREIASKSPLATRLAKDALNTIE---------NMSLRDGYRYEQDITAKLAKTEDAKEAQRAFL-EK-RPPVFK 255 (257)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHh-cc-CCCCCC
Confidence 2334448899999999999999999876 56899999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
.
T Consensus 256 ~ 256 (257)
T PRK06495 256 G 256 (257)
T ss_pred C
Confidence 5
No 46
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.97 E-value=7.8e-30 Score=229.30 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=131.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|. .++++|+|||++++ |+||+++||+++
T Consensus 101 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~-~~A~~lll~g~~~~-a~eA~~~Glv~~ 178 (256)
T TIGR03210 101 VQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGE-KKAREIWYLCRRYT-AQEALAMGLVNA 178 (256)
T ss_pred ECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCH-HHHHHHHHhCCCcC-HHHHHHcCCcee
Confidence 6999999999999999999999999999999999999888889999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (256)
T TIGR03210 179 VVPHDQLDA----------------------------------------------------------------------- 187 (256)
T ss_pred eeCHHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCH-HHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKL-SGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l-~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
-+.+++++|++.||.+++.+|++++... .... .+. .|......++.++|++||+++|+ +| |+|.|
T Consensus 188 -~a~~~a~~ia~~~~~a~~~~K~~l~~~~---------~~~~~~~~--~~~~~~~~~~~~~d~~e~~~af~-~k-r~p~~ 253 (256)
T TIGR03210 188 -EVQKWCDEIVEKSPTAIAIAKRSFNMDT---------AHQRGIAG--MGMYALKLYYDTAESREGVKAFQ-EK-RKPEF 253 (256)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cccchHHH--HHHHHHHHHccChhHHHHHHHHh-cc-CCCCC
Confidence 2344458899999999999999998754 1111 112 24456666889999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
++
T Consensus 254 ~~ 255 (256)
T TIGR03210 254 RK 255 (256)
T ss_pred CC
Confidence 74
No 47
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.97 E-value=1.2e-29 Score=227.59 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=133.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|+ |++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 172 (251)
T TIGR03189 96 VRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGR-VAAEDLLYSGRSID-GAEGARIGLANA 172 (251)
T ss_pred ecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCH-HHHHHHHHcCCCCC-HHHHHHCCCcce
Confidence 699999999999999999999999999999999999997 457899999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
++|+.+ +. . .
T Consensus 173 v~~~~~-~~---a------------------------------------------------------------------~ 182 (251)
T TIGR03189 173 VAEDPE-NA---A------------------------------------------------------------------L 182 (251)
T ss_pred ecCcHH-HH---H------------------------------------------------------------------H
Confidence 997432 10 0 1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHH-HHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVM-KYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l-~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
++ ++++|+++||.+++.+|++++... ..++++.+ ..|......++.++|++||+++|+ +| |+|.|
T Consensus 183 ~~---~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~-ek-r~p~~ 248 (251)
T TIGR03189 183 AW---FDEHPAKLSASSLRFAVRAARLGM---------NERVKAKIAEVEALYLEELMATHDAVEGLNAFL-EK-RPALW 248 (251)
T ss_pred HH---HHHHHHhCCHHHHHHHHHHHHhhh---------cccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH-hc-CCCCC
Confidence 12 237899999999999999998765 45677766 377777788899999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
.+
T Consensus 249 ~~ 250 (251)
T TIGR03189 249 ED 250 (251)
T ss_pred CC
Confidence 75
No 48
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=8.1e-30 Score=230.61 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=132.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|++++|. ..+++|+|||++++ |+||+++||+++
T Consensus 113 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 190 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM-AKAKYYLLLCEPVS-GEEAERIGLVSL 190 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 191 vv~~~~l~~----------------------------------------------------------------------- 199 (268)
T PRK07327 191 AVDDDELLP----------------------------------------------------------------------- 199 (268)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.|.+++++|++.||.+++.+|++++..... ...++++.+..+ ...+.++|++||+++|+ +| |+|+|.
T Consensus 200 -~a~~~a~~la~~~~~a~~~~K~~l~~~~~~------~~~~~~~~~~~~----~~~~~~~d~~eg~~af~-ek-r~p~~~ 266 (268)
T PRK07327 200 -KALEVAERLAAGSQTAIRWTKYALNNWLRM------AGPTFDTSLALE----FMGFSGPDVREGLASLR-EK-RAPDFP 266 (268)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------hhhhHHHHHHHH----HHHccChhHHHHHHHHH-hc-CCCCCC
Confidence 234455899999999999999999865300 012355555544 34678999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 267 ~ 267 (268)
T PRK07327 267 G 267 (268)
T ss_pred C
Confidence 5
No 49
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=9.9e-30 Score=228.45 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=135.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||.++|++|+.|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 100 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-~~a~~lll~g~~~~-a~eA~~~Glv~~ 177 (254)
T PRK08259 100 VSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGH-SRAMDLILTGRPVD-ADEALAIGLANR 177 (254)
T ss_pred ECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCCCE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 178 vv~~~~l~~----------------------------------------------------------------------- 186 (254)
T PRK08259 178 VVPKGQARA----------------------------------------------------------------------- 186 (254)
T ss_pred eeChhHHHH-----------------------------------------------------------------------
Confidence 999876532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP 237 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P 237 (268)
.|.+++++|++.||.+++.+|+++++.. ..++++++..|.......+. +|++||+++|+ +|.++|
T Consensus 187 -~a~~~a~~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~-~~~~~~ 251 (254)
T PRK08259 187 -AAEELAAELAAFPQTCLRADRLSALEQW---------GLPEEAALANEFAHGLAVLA-AEALEGAARFA-AGAGRH 251 (254)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHH-hhhccc
Confidence 2344448899999999999999999765 56799999999887666666 99999999999 553555
No 50
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=5.1e-30 Score=227.98 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=144.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|++.||+|||+++|+|++|+.++|.+|.+|+|.+|+|.+|. ++|+.+++||++++ ++||.++|||++
T Consensus 134 inG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~-s~Ale~~ltg~~~~-AqeA~~~GlVn~ 211 (290)
T KOG1680|consen 134 INGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK-SRALEMILTGRRLG-AQEAKKIGLVNK 211 (290)
T ss_pred eeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh-HHHHHHHHhcCccc-HHHHHhCCceeE
Confidence 6899999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.+++..
T Consensus 212 Vvp~~~~l~----------------------------------------------------------------------- 220 (290)
T KOG1680|consen 212 VVPSGDALG----------------------------------------------------------------------- 220 (290)
T ss_pred eecchhHHH-----------------------------------------------------------------------
Confidence 999887421
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
-|.+++++|+++||..++..|+.++.+. +.++.+++.+|..+....+..+|.+||+.+|. +| |+|+|+
T Consensus 221 -eAv~l~~~Ia~~~~~~v~~~K~svn~~~---------e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~-~k-r~~~~~ 288 (290)
T KOG1680|consen 221 -EAVKLAEQIAKNSPLVVRADKESVNAAY---------ETTLFEGLELERDLFGSTFATEDRLEGMTAFA-EK-RKPKFS 288 (290)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHh---------hccHHHHHHhhhhhhhhhhhhHHHHHHHHHhc-cc-CCcccc
Confidence 1333448899999999999999999977 67899999999999999999999999999997 78 799998
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
.
T Consensus 289 k 289 (290)
T KOG1680|consen 289 K 289 (290)
T ss_pred c
Confidence 5
No 51
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.6e-29 Score=224.42 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=135.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |+||+++||+++
T Consensus 93 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 170 (243)
T PRK07854 93 INGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGG-GRARAMLLGAEKLT-AEQALATGMANR 170 (243)
T ss_pred ecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHCCCccc
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+++ ++.. .
T Consensus 171 v~~---~~~a---------------------------------------------------------------------~ 178 (243)
T PRK07854 171 IGT---LADA---------------------------------------------------------------------Q 178 (243)
T ss_pred ccC---HHHH---------------------------------------------------------------------H
Confidence 864 1100 2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+|| ++|++.||.+++.+|+++++. .++++++..|......++.++|++||+++|+ +| ++|.|+
T Consensus 179 ~~a----~~l~~~~~~a~~~~K~~l~~~-----------~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 241 (243)
T PRK07854 179 AWA----AEIAGLAPLALQHAKRVLNDD-----------GAIEEAWPAHKELFDKAWASQDAIEAQVARI-EK-RPPKFQ 241 (243)
T ss_pred HHH----HHHHhCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHHHHhcCchHHHHHHHHh-CC-CCCCCC
Confidence 344 789999999999999999853 3588999999999898999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 242 ~ 242 (243)
T PRK07854 242 G 242 (243)
T ss_pred C
Confidence 5
No 52
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.9e-29 Score=226.90 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=135.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|+ |+.|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 107 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 183 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW-ARTRWLLLTGETID-AAQALAWGLVDR 183 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH-HHHHHHHHcCCcCC-HHHHHHCCCcCe
Confidence 699999999999999999999999999999999997 888899999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 184 vv~~~~l~~----------------------------------------------------------------------- 192 (256)
T PRK06143 184 VVPLAELDA----------------------------------------------------------------------- 192 (256)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
.+.+++++|++.||.+++.+|++++... ..++.+.+..|......++.++|++||+++|+ +|
T Consensus 193 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~-ek 254 (256)
T PRK06143 193 -AVERLAASLAGCGPQALRQQKRLLREWE---------DMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFL-NR 254 (256)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHhcChHHHHHHHHHH-hh
Confidence 2344458899999999999999999865 56799999999999999999999999999999 66
No 53
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.9e-29 Score=226.49 Aligned_cols=149 Identities=23% Similarity=0.328 Sum_probs=136.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 105 v~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-~~a~~l~l~g~~~s-a~eA~~~Glv~~ 182 (255)
T PRK07260 105 VDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGL-NRATHLAMTGEALT-AEKALEYGFVYR 182 (255)
T ss_pred ecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCH-HHHHHHHHhCCccC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 183 vv~~~~l~~----------------------------------------------------------------------- 191 (255)
T PRK07260 183 VAESEKLEK----------------------------------------------------------------------- 191 (255)
T ss_pred ecCHhHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
.+.+++++|++.||.+++.+|+++++.. ..++++.+..|......++.++|++||+++|+ +|
T Consensus 192 -~a~~~a~~la~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k 253 (255)
T PRK07260 192 -TCEQLLKKLRRGSSNSYAAIKSLVWESF---------FKGWEDYAKLELALQESLAFKEDFKEGVRAFS-ER 253 (255)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hc
Confidence 2344458899999999999999999876 46799999999999999999999999999999 66
No 54
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.3e-29 Score=224.24 Aligned_cols=152 Identities=22% Similarity=0.281 Sum_probs=136.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++| ..+++|+|||++++ |+||+++||++.
T Consensus 96 v~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g--~~a~~lll~g~~~~-a~eA~~~Glv~~ 172 (248)
T PRK06072 96 INGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTG--QRFYEILVLGGEFT-AEEAERWGLLKI 172 (248)
T ss_pred ECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhh--HHHHHHHHhCCccC-HHHHHHCCCccc
Confidence 699999999999999999999999999999999999999999999999999 58999999999999 999999999985
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
++ ++.
T Consensus 173 -~~--~~~------------------------------------------------------------------------ 177 (248)
T PRK06072 173 -SE--DPL------------------------------------------------------------------------ 177 (248)
T ss_pred -cc--hHH------------------------------------------------------------------------
Confidence 32 211
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.|.+++++|++.||.+++.+|+++++.. ..++++.+..|......++.++|++||+++|+ +| |+|.|.
T Consensus 178 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-~k-r~p~~~ 246 (248)
T PRK06072 178 SDAEEMANRISNGPFQSYIAAKRMINLVL---------YNDLEEFLEYESAIQGYLGKTEDFKEGISSFK-EK-REPKFK 246 (248)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh---------hcCHHHHHHHHHHHHHHHhCChhHHHHHHHHh-cC-CCCCCC
Confidence 11334458899999999999999999876 46799999999999999999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 247 ~ 247 (248)
T PRK06072 247 G 247 (248)
T ss_pred C
Confidence 5
No 55
>PLN02921 naphthoate synthase
Probab=99.96 E-value=3.1e-29 Score=232.86 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=134.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||.++|++|++|++++|+|++|. ..+++|+|||+.++ |+||+++||+++
T Consensus 168 VnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~-~~A~ellltG~~~~-A~eA~~~GLV~~ 245 (327)
T PLN02921 168 VAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ-KKAREMWFLARFYT-ASEALKMGLVNT 245 (327)
T ss_pred ECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCC-HHHHHHCCCceE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.+++..
T Consensus 246 vv~~~~l~~----------------------------------------------------------------------- 254 (327)
T PLN02921 246 VVPLDELEG----------------------------------------------------------------------- 254 (327)
T ss_pred EeCHHHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|+++||.+++.+|++++... .. .......+......++.++|++||+++|+ +| |+|.|.
T Consensus 255 -~a~~~a~~la~~~p~al~~~K~~l~~~~---------~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~-ek-r~p~f~ 321 (327)
T PLN02921 255 -ETVKWCREILRNSPTAIRVLKSALNAAD---------DG-HAGLQELGGNATLLFYGSEEGNEGRTAYL-EG-RAPDFS 321 (327)
T ss_pred -HHHHHHHHHHccCHHHHHHHHHHHHHhh---------cc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCCC
Confidence 1333448899999999999999998765 22 33333444466677889999999999999 88 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
.
T Consensus 322 ~ 322 (327)
T PLN02921 322 K 322 (327)
T ss_pred C
Confidence 5
No 56
>PRK08321 naphthoate synthase; Validated
Probab=99.96 E-value=3.9e-29 Score=229.90 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=136.0
Q ss_pred CCchhehHHHHHHhhCCEEEEe-CCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riat-e~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||||||+ ++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||++
T Consensus 142 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~-~~A~~l~ltG~~~~-A~eA~~~GLv~ 219 (302)
T PRK08321 142 VPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQ-KFAREIFFLGRTYS-AEEAHDMGAVN 219 (302)
T ss_pred EcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHCCCce
Confidence 6999999999999999999999 699999999999999999999999999998 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++.+
T Consensus 220 ~vv~~~~l~~---------------------------------------------------------------------- 229 (302)
T PRK08321 220 AVVPHAELET---------------------------------------------------------------------- 229 (302)
T ss_pred EeeCHHHHHH----------------------------------------------------------------------
Confidence 9999776532
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.|.+++++|++.||.+++.+|++++... .. +.+....|......++.++|++||+++|+ +| |+|.|
T Consensus 230 --~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~-ek-r~p~~ 295 (302)
T PRK08321 230 --EALEWAREINGKSPTAMRMLKYAFNLTD---------DG-LVGQQLFAGEATRLAYMTDEAQEGRDAFL-EK-RDPDW 295 (302)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHh-cc-CCCCC
Confidence 2344458899999999999999998754 22 33444567777788899999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
+.
T Consensus 296 ~~ 297 (302)
T PRK08321 296 SD 297 (302)
T ss_pred CC
Confidence 75
No 57
>PLN02888 enoyl-CoA hydratase
Probab=99.96 E-value=5.9e-29 Score=224.77 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||.++|++|++|++++|+|+.|. ..+++|+|||++++ |+||+++||+++
T Consensus 106 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 183 (265)
T PLN02888 106 INGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGA-NRAREVSLTAMPLT-AETAERWGLVNH 183 (265)
T ss_pred ECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCH-HHHHHHHHhCCccC-HHHHHHcCCccE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.
T Consensus 184 vv~~~~l~------------------------------------------------------------------------ 191 (265)
T PLN02888 184 VVEESELL------------------------------------------------------------------------ 191 (265)
T ss_pred eeChHHHH------------------------------------------------------------------------
Confidence 99976542
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhc--CChhHHHHHHHHhhcCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS--LRSDFAEGVRAVLVDKDQNPK 238 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~--~~~D~~eGv~a~l~~K~~~P~ 238 (268)
+.|.+++++|++.+|.+++.+|++++... ..++.+++..|......++ .++|++||+++|+ +| |+|+
T Consensus 192 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~-ek-r~~~ 260 (265)
T PLN02888 192 KKAREVAEAIIKNNQGMVLRYKSVINDGL---------KLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFI-AG-RSSK 260 (265)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-hc-CCCC
Confidence 12344558899999999999999999876 4678999999987766664 5999999999999 77 5664
No 58
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.7e-29 Score=224.11 Aligned_cols=149 Identities=16% Similarity=0.215 Sum_probs=133.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++ |++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 101 v~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 175 (249)
T PRK07938 101 VHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQ-HLMRALFFTAATIT-AAELHHFGSVEE 175 (249)
T ss_pred EcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCH-HHHHHHHHhCCcCC-HHHHHHCCCccE
Confidence 6999999999999999999999999999999999985 667889999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 176 vv~~~~l~~----------------------------------------------------------------------- 184 (249)
T PRK07938 176 VVPRDQLDE----------------------------------------------------------------------- 184 (249)
T ss_pred EeCHHHHHH-----------------------------------------------------------------------
Confidence 999766432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNP 237 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P 237 (268)
.|.+++++|+++||.+++.+|++++... ..++++.+..|......++.++|++||+++|+ +| |+|
T Consensus 185 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~-ek-r~p 249 (249)
T PRK07938 185 -AALEVARKIAAKDTRVIRAAKEALNGID---------PQDVERSYRWEQGFTFELNLAGVSDEHRDAFV-EK-RKA 249 (249)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhcCccHHHHHHHHH-hc-CCC
Confidence 2444458899999999999999998765 46789999999998888999999999999999 77 565
No 59
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.8e-29 Score=225.51 Aligned_cols=152 Identities=24% Similarity=0.304 Sum_probs=133.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCcccc-ccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENG-IGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~-iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|+++.|. ..+++|+|||++++ |++|+++||++
T Consensus 109 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~-~~a~~l~l~g~~~~-a~eA~~~Glv~ 186 (262)
T PRK06144 109 IAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA-ARVKDMLFTARLLE-AEEALAAGLVN 186 (262)
T ss_pred ECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHcCCcC
Confidence 699999999999999999999999999999996 9999999999999999998 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++.+
T Consensus 187 ~vv~~~~l~~---------------------------------------------------------------------- 196 (262)
T PRK06144 187 EVVEDAALDA---------------------------------------------------------------------- 196 (262)
T ss_pred eecCHHHHHH----------------------------------------------------------------------
Confidence 9999765432
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.|.+++++|++.||.+++.+|++++... ...+ ..+......++.++|++||+++|+ +| |+|.|
T Consensus 197 --~a~~~a~~i~~~~~~a~~~~K~~l~~~~---------~~~l----~~~~~~~~~~~~~~~~~e~~~af~-~k-r~p~~ 259 (262)
T PRK06144 197 --RADALAELLAAHAPLTLRATKEALRRLR---------REGL----PDGDDLIRMCYMSEDFREGVEAFL-EK-RPPKW 259 (262)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------hcCH----HHHHHHHHHHhcChHHHHHHHHHh-cC-CCCCC
Confidence 2344458899999999999999998765 2334 334556677889999999999999 78 79999
Q ss_pred CC
Q 024353 240 NP 241 (268)
Q Consensus 240 ~~ 241 (268)
.+
T Consensus 260 ~~ 261 (262)
T PRK06144 260 KG 261 (262)
T ss_pred CC
Confidence 75
No 60
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.96 E-value=6e-29 Score=223.43 Aligned_cols=152 Identities=28% Similarity=0.383 Sum_probs=134.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|+.|. ..+++|+|||+.++ ++||.++||+++
T Consensus 105 v~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 182 (257)
T COG1024 105 VNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGR-GRAKELLLTGEPIS-AAEALELGLVDE 182 (257)
T ss_pred EcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCH-HHHHHHHHcCCcCC-HHHHHHcCCcCe
Confidence 6999999999999999999999999999999999999977999999999998 89999999999999 999999999999
Q ss_pred ecCC-CcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 81 YVPS-GNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 81 ~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
+|+. +++.+
T Consensus 183 vv~~~~~l~~---------------------------------------------------------------------- 192 (257)
T COG1024 183 VVPDAEELLE---------------------------------------------------------------------- 192 (257)
T ss_pred eeCCHHHHHH----------------------------------------------------------------------
Confidence 9985 34321
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKW 239 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w 239 (268)
.|.+++++|++ +|.++..+|+.+++.. ..++++.+..|.......+.++|++||+++|+ + |+|.|
T Consensus 193 --~a~~~a~~~a~-~~~a~~~~k~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~-~--r~p~~ 257 (257)
T COG1024 193 --RALELARRLAA-PPLALAATKRLVRAAL---------EADLAEALEAEALAFARLFSSEDFREGVRAFL-E--RKPVF 257 (257)
T ss_pred --HHHHHHHHHcc-CHHHHHHHHHHHHHhh---------hccHHHHHHHHHHHHHHHhcChhHHHHHHHHH-c--cCCCC
Confidence 13333355555 9999999999999886 34599999999999888888999999999999 4 68887
No 61
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=5.2e-29 Score=224.28 Aligned_cols=152 Identities=20% Similarity=0.291 Sum_probs=136.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|+.+ ..+++|+|||++++ |++|+++||+++
T Consensus 108 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~--~~a~~l~l~g~~~~-a~eA~~~Glv~~ 184 (260)
T PRK07827 108 IDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSP--RAAARYYLTGEKFG-AAEAARIGLVTA 184 (260)
T ss_pred EcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhH--HHHHHHHHhCCccC-HHHHHHcCCccc
Confidence 699999999999999999999999999999999999999999999999865 68999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+++ ++.
T Consensus 185 v~~--~l~------------------------------------------------------------------------ 190 (260)
T PRK07827 185 AAD--DVD------------------------------------------------------------------------ 190 (260)
T ss_pred chH--HHH------------------------------------------------------------------------
Confidence 864 222
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.+.+++++|++.||.+++.+|+++++.. ..++.+.++.|......++.++|+++|+++|+ +| |+|.|.
T Consensus 191 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~-~k-r~p~~~ 259 (260)
T PRK07827 191 AAVAALLADLRRGSPQGLAESKALTTAAV---------LAGFDRDAEELTEESARLFVSDEAREGMTAFL-QK-RPPRWA 259 (260)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh-cC-CCCCCC
Confidence 12344458899999999999999999876 56789999999998898999999999999998 78 689985
No 62
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.96 E-value=5.8e-29 Score=221.54 Aligned_cols=149 Identities=28% Similarity=0.399 Sum_probs=137.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+.|. ..+++|+|||++++ |++|+++||+++
T Consensus 97 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 174 (245)
T PF00378_consen 97 VNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGP-SRARELLLTGEPIS-AEEALELGLVDE 174 (245)
T ss_dssp ESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHH-HHHHHHHHHTCEEE-HHHHHHTTSSSE
T ss_pred ccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeec-ccccccccccccch-hHHHHhhcceeE
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
++|++++..
T Consensus 175 v~~~~~l~~----------------------------------------------------------------------- 183 (245)
T PF00378_consen 175 VVPDEELDE----------------------------------------------------------------------- 183 (245)
T ss_dssp EESGGGHHH-----------------------------------------------------------------------
T ss_pred EcCchhhhH-----------------------------------------------------------------------
Confidence 999887532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
.+.+++++|++.+|.+++.+|+.+++.. ...+.+.+..|......++.++|++||+++|+ +|
T Consensus 184 -~a~~~a~~l~~~~~~a~~~~K~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 184 -EALELAKRLAAKPPSALRATKKALNRAL---------EQSLEEALEFEQDLFAECFKSEDFQEGIAAFL-EK 245 (245)
T ss_dssp -HHHHHHHHHHTSCHHHHHHHHHHHHHHH---------HSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-TT
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHh-Cc
Confidence 2445558999999999999999999876 46789999999999999999999999999999 65
No 63
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.1e-28 Score=221.07 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=132.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++|++++++++.|. ..+++|++||++++ |++|+++||+++
T Consensus 104 v~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 181 (251)
T PRK06023 104 VDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH-QRAFALLALGEGFS-AEAAQEAGLIWK 181 (251)
T ss_pred eCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH-HHHHHHHHhCCCCC-HHHHHHcCCcce
Confidence 6999999999999999999999999999999999999999999999999997 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.+++.+
T Consensus 182 vv~~~~l~~----------------------------------------------------------------------- 190 (251)
T PRK06023 182 IVDEEAVEA----------------------------------------------------------------------- 190 (251)
T ss_pred eeCHHHHHH-----------------------------------------------------------------------
Confidence 999776532
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 230 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l 230 (268)
.+.+++++|++.||.+++.+|++++... ..+.+.+..|......++.++|++||+++|+
T Consensus 191 -~a~~~a~~l~~~~~~a~~~~K~~l~~~~----------~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~ 249 (251)
T PRK06023 191 -ETLKAAEELAAKPPQALQIARDLMRGPR----------EDILARIDEEAKHFAARLKSAEARAAFEAFM 249 (251)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhch----------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 2344458899999999999999998644 3588888888888888899999999999998
No 64
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.96 E-value=1.6e-28 Score=220.72 Aligned_cols=152 Identities=13% Similarity=0.170 Sum_probs=134.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|++|++| +.+|+++.|. ..+++|+|||++++ |++|+++||+++
T Consensus 103 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~-~~a~~l~l~g~~~~-a~eA~~~Glv~~ 179 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGT-QKAHYMTLMTQPVT-AQQAFSWGLVDA 179 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCH-HHHHHHHHhCCccc-HHHHHHcCCCce
Confidence 69999999999999999999999999999999999999876 4578888898 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||+++.
T Consensus 180 vv~~~~~------------------------------------------------------------------------- 186 (255)
T PRK07112 180 YGANSDT------------------------------------------------------------------------- 186 (255)
T ss_pred ecCcHHH-------------------------------------------------------------------------
Confidence 9985431
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.+.+++++|++.||.+++.+|++++... ..+.+.+..|......++.++|++||+++|+ +| |+|.|.
T Consensus 187 -~~~~~a~~l~~~~p~a~~~~K~~~~~~~----------~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~-~k-r~p~~~ 253 (255)
T PRK07112 187 -LLRKHLLRLRCLNKAAVARYKSYASTLD----------DTVAAARPAALAANIEMFADPENLRKIARYV-ET-GKFPWE 253 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHcChHHHHHHHHHH-cC-CCCCCC
Confidence 1222347899999999999999998643 3588899999998888999999999999999 78 799997
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
.
T Consensus 254 ~ 254 (255)
T PRK07112 254 A 254 (255)
T ss_pred C
Confidence 4
No 65
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.96 E-value=9.5e-29 Score=224.92 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=135.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccc-cCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGL-FPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl-~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|+.|. ..+++|+|||++++ |+||+++||++
T Consensus 114 V~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~-~~a~~llltg~~~~-a~eA~~~Glv~ 191 (278)
T PLN03214 114 IRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDR-KVAESLLLRGRLVR-PAEAKQLGLID 191 (278)
T ss_pred EcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCH-HHHHHHHHcCCccC-HHHHHHcCCCc
Confidence 699999999999999999999999999999999999 5999999999999998 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++.
T Consensus 192 ~vv~~~~l~----------------------------------------------------------------------- 200 (278)
T PLN03214 192 EVVPAAALM----------------------------------------------------------------------- 200 (278)
T ss_pred EecChHHHH-----------------------------------------------------------------------
Confidence 999976542
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
+.|.+++++|.+.||.+++.+|+++++.. ..++++++..|......++.++|++||+++|+ +|
T Consensus 201 -~~a~~~a~~l~~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~s~d~~egi~afl-ek 263 (278)
T PLN03214 201 -EAAASAMERALKLPSAARAATKALLREEF---------SAAWEAYYEEEAKGGWKMLSEPSIIKALGGVM-ER 263 (278)
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HH
Confidence 12344458899999999999999999875 45789999999998888999999999999998 54
No 66
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2e-28 Score=224.92 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=133.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccc-cccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGI-GLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~i-Gl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||||||+++++|++||+++ |++| |+++ + +.+|. ..+++|+|||++++ |++|+++||++
T Consensus 119 V~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~-~-~~vG~-~~A~~llltg~~i~-A~eA~~~GLV~ 192 (298)
T PRK12478 119 VHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW-L-YRLSL-AKVKWHSLTGRPLT-GVQAAEAELIN 192 (298)
T ss_pred EccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH-H-HHhhH-HHHHHHHHcCCccC-HHHHHHcCCcc
Confidence 6999999999999999999999999999999997 9875 3444 3 34787 89999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++..
T Consensus 193 ~vv~~~~l~~---------------------------------------------------------------------- 202 (298)
T PRK12478 193 EAVPFERLEA---------------------------------------------------------------------- 202 (298)
T ss_pred eecCHHHHHH----------------------------------------------------------------------
Confidence 9999876532
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHH--------HHHHHHhh
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFA--------EGVRAVLV 231 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~--------eGv~a~l~ 231 (268)
.+.+++++|+.+||.+++.+|++++... ...++.+++..|...+..++.++|++ ||++||+
T Consensus 203 --~a~~~a~~la~~~p~a~~~~K~~l~~~~--------~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~- 271 (298)
T PRK12478 203 --RVAEVATELARIPLSQLQAQKLIVNQAY--------ENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAV- 271 (298)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHHH--------HhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHH-
Confidence 2334447899999999999999999876 12468999999999999999999997 5999999
Q ss_pred cCCCCCCCCCCC
Q 024353 232 DKDQNPKWNPAS 243 (268)
Q Consensus 232 ~K~~~P~w~~~~ 243 (268)
+| |+|+|..-+
T Consensus 272 ek-R~p~f~~~~ 282 (298)
T PRK12478 272 ER-RDGPFGDYS 282 (298)
T ss_pred Hh-cCCcccccC
Confidence 88 799999644
No 67
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=1.9e-28 Score=219.43 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=132.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 102 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 179 (249)
T PRK05870 102 VNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGP-QVARAALLFGMRFD-AEAAVRHGLALM 179 (249)
T ss_pred ECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCH-HHHHHHHHhCCccC-HHHHHHcCCHHH
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+| +++.+
T Consensus 180 vv--~~l~~----------------------------------------------------------------------- 186 (249)
T PRK05870 180 VA--DDPVA----------------------------------------------------------------------- 186 (249)
T ss_pred HH--hhHHH-----------------------------------------------------------------------
Confidence 99 33321
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccC-CCHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNEL-SKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 230 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~-~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l 230 (268)
-|.+++++|++.||.+++.+|++++... . .++++++..|......++.++|++||+++|+
T Consensus 187 -~a~~~a~~la~~~~~a~~~~K~~~~~~~---------~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ 247 (249)
T PRK05870 187 -AALELAAGPAAAPRELVLATKASMRATA---------SLAQHAAAVEFELGPQAASVQSPEFAARLAAAQ 247 (249)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHhcc---------ccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHh
Confidence 1334458899999999999999999865 4 5789999999999999999999999999998
No 68
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.95 E-value=3.9e-28 Score=238.09 Aligned_cols=157 Identities=11% Similarity=0.002 Sum_probs=141.1
Q ss_pred CCchhehHH-HHHHhhCCEEEE-------eCCceEeCccccccccCCccHHHHHhcCC-CchHHH--HHHhhcCCCCCcH
Q 024353 1 MDGVTMGFG-IGISGHGRYRIV-------TEKTLLAMPENGIGLFPDVGFSYIAAKGP-GGGSVG--AYLGMTGKRISTP 69 (268)
Q Consensus 1 vnG~~~GgG-~~La~~~d~ria-------te~a~f~~pe~~iGl~Pd~G~s~~L~rl~-g~~~~g--~~L~LTG~~l~~a 69 (268)
=||+|+||| ++|+++||+||+ +++++|++||+++|++|++|++++|+|++ |. ..+ +.|.|||++++ |
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~-~~a~~~~~~ltg~~i~-A 450 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAE-PAPVAAVRDKIGQALD-A 450 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCc-hhHHHHHHHHhCCCCC-H
Confidence 079999999 999999999999 99999999999999999999999999987 86 678 55999999999 9
Q ss_pred HHHHHcCCcceecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHH
Q 024353 70 SDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELK 149 (268)
Q Consensus 70 ~da~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~ 149 (268)
+||+++||++++||++++.+
T Consensus 451 ~eA~~~Glv~~vv~~~~l~~------------------------------------------------------------ 470 (546)
T TIGR03222 451 EEAERLGLVTAAPDDIDWED------------------------------------------------------------ 470 (546)
T ss_pred HHHHHcCCcccccCchHHHH------------------------------------------------------------
Confidence 99999999999999876532
Q ss_pred hccccchhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHH-HHHHHHHHHHhcCChhHHH---H
Q 024353 150 KHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE---G 225 (268)
Q Consensus 150 ~~~~~~~~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~D~~e---G 225 (268)
.+.+++++|+++||.+++.+|++++... ..++++. +..|...+..++.++|.+| |
T Consensus 471 ------------~a~~~a~~la~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g 529 (546)
T TIGR03222 471 ------------EIRIALEERASFSPDALTGLEANLRFAG---------PETMETRIFGRLTAWQNWIFNRPNAVGENGA 529 (546)
T ss_pred ------------HHHHHHHHHHhcCHHHHHHHHHHHhhcC---------CcChhhhHHHHHHHHHHHHhcCCcccchhhH
Confidence 1334448899999999999999998876 6789999 9999999999999999999 9
Q ss_pred HHHHhhcCCCCCCCCCC
Q 024353 226 VRAVLVDKDQNPKWNPA 242 (268)
Q Consensus 226 v~a~l~~K~~~P~w~~~ 242 (268)
+++|+ +| |+|+|+-.
T Consensus 530 ~~af~-ek-r~p~f~~~ 544 (546)
T TIGR03222 530 LKVYG-SG-KKAQFDME 544 (546)
T ss_pred HHHHc-cC-CCCCCCcc
Confidence 99999 88 79999753
No 69
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.95 E-value=4.9e-28 Score=193.93 Aligned_cols=117 Identities=44% Similarity=0.760 Sum_probs=100.9
Q ss_pred hhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHH
Q 024353 124 LKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLS 203 (268)
Q Consensus 124 l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~ 203 (268)
|..+++.|++||+.. |++||+++|++.. .+||.++++.|.++||+|+++|++++++++ ..+++
T Consensus 2 L~~~~~~I~~~F~~~-s~~eI~~~L~~~~-------~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~---------~~sl~ 64 (118)
T PF13766_consen 2 LAEHLEAIDRCFSAD-SVEEIIEALEADG-------DEWAQKTLETLRSGSPLSLKVTFEQLRRGR---------NLSLA 64 (118)
T ss_dssp CHHCHHHHHHHTTSS-SHHHHHHHHHHHS--------HHHHHHHHHHCCS-HHHHHHHHHHHHCCT---------TS-HH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHccC-------cHHHHHHHHHHHHCCHHHHHHHHHHHHHhh---------hCCHH
Confidence 456788999999988 9999999999965 789999999999999999999999999988 68999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCCCCCcCCCCHHHHHhhhc
Q 024353 204 GVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWNPASLEEVNQSEVEALFE 257 (268)
Q Consensus 204 ~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~~~~~~~v~~~~v~~~f~ 257 (268)
++|++|+++..+++.++||.|||||.||||++.|+|+++++++|+++.|+++|+
T Consensus 65 e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 65 ECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999995
No 70
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.95 E-value=4.2e-28 Score=238.35 Aligned_cols=157 Identities=11% Similarity=0.009 Sum_probs=142.0
Q ss_pred CC-chhehHH-HHHHhhCCEEEEe-------CCceEeCccccccccCCccHHHHHhcC-CCchHHHHHH--hhcCCCCCc
Q 024353 1 MD-GVTMGFG-IGISGHGRYRIVT-------EKTLLAMPENGIGLFPDVGFSYIAAKG-PGGGSVGAYL--GMTGKRIST 68 (268)
Q Consensus 1 vn-G~~~GgG-~~La~~~d~riat-------e~a~f~~pe~~iGl~Pd~G~s~~L~rl-~g~~~~g~~L--~LTG~~l~~ 68 (268)
|| |+|+||| ++|+++||+|||+ ++++|++||+++|++|++|++++|+|+ +|. ..+++| ++||++++
T Consensus 376 V~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~-~~A~~~~l~~tg~~i~- 453 (550)
T PRK08184 376 IEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGE-PDPLAAVRAKIGQPLD- 453 (550)
T ss_pred ECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcCh-HHHHHHHHHHhCCcCC-
Confidence 55 9999999 9999999999999 999999999999999999999999987 697 788886 69999999
Q ss_pred HHHHHHcCCcceecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHH
Q 024353 69 PSDALFAGLGTDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEEL 148 (268)
Q Consensus 69 a~da~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L 148 (268)
|++|+++||++++||++++.+
T Consensus 454 A~eA~~~GLv~~vv~~~~l~~----------------------------------------------------------- 474 (550)
T PRK08184 454 ADAAEELGLVTAAPDDIDWED----------------------------------------------------------- 474 (550)
T ss_pred HHHHHHcCCcccccChHHHHH-----------------------------------------------------------
Confidence 999999999999999876532
Q ss_pred HhccccchhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHH-HHHHHHHHHHhcCChhHHH---
Q 024353 149 KKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGV-MKYEYRVALRSSLRSDFAE--- 224 (268)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~-l~~e~~~~~~~~~~~D~~e--- 224 (268)
.+.+++++|+++||.+++.+|++++... ..++++. +..|...+..++.++|.+|
T Consensus 475 -------------~a~~~a~~ia~~~p~a~~~~K~~l~~~~---------~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~ 532 (550)
T PRK08184 475 -------------EVRIALEERASLSPDALTGMEANLRFAG---------PETMETRIFGRLTAWQNWIFQRPNAVGEKG 532 (550)
T ss_pred -------------HHHHHHHHHHhCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHhcCCcccccch
Confidence 2344458999999999999999999876 6789999 9999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCC
Q 024353 225 GVRAVLVDKDQNPKWNPA 242 (268)
Q Consensus 225 Gv~a~l~~K~~~P~w~~~ 242 (268)
|+++|+ +| |+|+|+..
T Consensus 533 g~~af~-ek-r~~~f~~~ 548 (550)
T PRK08184 533 ALKVYG-TG-QKAQFDWN 548 (550)
T ss_pred HHHHhc-cC-CCCCCCCC
Confidence 999999 88 79999864
No 71
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.95 E-value=2.7e-27 Score=212.07 Aligned_cols=147 Identities=14% Similarity=0.186 Sum_probs=134.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|++||++++ +++|+++||+++
T Consensus 101 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~-~~a~~llltg~~~~-a~eA~~~Glv~~ 178 (249)
T PRK07110 101 MQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGL-ALGQEMLLTARYYR-GAELKKRGVPFP 178 (249)
T ss_pred ecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCCeE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (249)
T PRK07110 179 VLPRAEVLE----------------------------------------------------------------------- 187 (249)
T ss_pred EeChHHHHH-----------------------------------------------------------------------
Confidence 999765422
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 230 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l 230 (268)
.|.+.+++|++.||.+++.+|+.+++.. ..++.+.+..|......++.++|++||+++.-
T Consensus 188 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 188 -KALELARSLAEKPRHSLVLLKDHLVADR---------RRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhh---------hccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 2334458899999999999999999876 56799999999999999999999999999863
No 72
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.93 E-value=1.1e-25 Score=202.88 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=123.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |+||+++||+++
T Consensus 101 V~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-~~a~~l~ltg~~~~-a~eA~~~GLv~~ 178 (258)
T PRK06190 101 INGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI-GRARRMSLTGDFLD-AADALRAGLVTE 178 (258)
T ss_pred ECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH-HHHHHHHHhCCccC-HHHHHHcCCCeE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 179 vv~~~~l~~----------------------------------------------------------------------- 187 (258)
T PRK06190 179 VVPHDELLP----------------------------------------------------------------------- 187 (258)
T ss_pred ecCHhHHHH-----------------------------------------------------------------------
Confidence 999776432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLR 219 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~ 219 (268)
.|.+++++|+++||.+++.+|++++... ..++.+.+..|......++.+
T Consensus 188 -~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 188 -RARRLAASIAGNNPAAVRALKASYDDGA---------AAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHHcC
Confidence 2334448899999999999999999876 567999999999998887776
No 73
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.93 E-value=2.8e-26 Score=197.51 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=144.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|+|.++|||++|+++||+|||.++++|+++|++++++|..|+|.+|+|+.|. +++.+|.+||+.++ +.||..+||++|
T Consensus 131 idG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~-alaKELIftarvl~-g~eA~~lGlVnh 208 (291)
T KOG1679|consen 131 IDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV-ALAKELIFTARVLN-GAEAAKLGLVNH 208 (291)
T ss_pred hcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH-HHHHhHhhhheecc-chhHHhcchHHH
Confidence 6899999999999999999999999999999999999999999999999998 99999999999999 899999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+|..++-.+.. .
T Consensus 209 vv~qneegdaa--------------------------------------------------------------------~ 220 (291)
T KOG1679|consen 209 VVEQNEEGDAA--------------------------------------------------------------------Y 220 (291)
T ss_pred HHhcCccccHH--------------------------------------------------------------------H
Confidence 99876522210 1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+-|.+++++|.-+.|++++++|.+++++. ..++..++..|....+..+.+.|..||+.+|- +| |.|.|+
T Consensus 221 ~kal~lA~eilp~gPiavr~aKlAIn~G~---------evdiasgl~iEe~CYaq~i~t~drLeglaaf~-ek-r~p~y~ 289 (291)
T KOG1679|consen 221 QKALELAREILPQGPIAVRLAKLAINLGM---------EVDIASGLSIEEMCYAQIIPTKDRLEGLAAFK-EK-RKPEYK 289 (291)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHhccCc---------eecccccccHHHHHHHhcCcHHHHHHHHHHHH-hh-cCCCcC
Confidence 22455668999999999999999999987 57888999999999999999999999999998 78 799987
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 290 G 290 (291)
T KOG1679|consen 290 G 290 (291)
T ss_pred C
Confidence 6
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.92 E-value=1e-24 Score=221.07 Aligned_cols=179 Identities=22% Similarity=0.226 Sum_probs=135.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 109 v~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~-~~A~~llltG~~~~-A~eA~~~GLv~~ 186 (715)
T PRK11730 109 INGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGA-DNALEWIAAGKDVR-AEDALKVGAVDA 186 (715)
T ss_pred ECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCH-HHHHHHHHcCCcCC-HHHHHHCCCCeE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCC--------CCCchhhcchhHHHhhhcCCCCHHHHHHHHHhcc
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDP--------EGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQ 152 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~--------~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~ 152 (268)
+||++++.....++.+ +....+ ++.+++.. ..+..+| .
T Consensus 187 vv~~~~l~~~a~~~a~----------------~la~~~~~~~~~~~~~~~p~a~--~~~~~~~----~------------ 232 (715)
T PRK11730 187 VVAPEKLQEAALALLK----------------QAIAGKLDWKARRQPKLEPLKL--SKIEAMM----S------------ 232 (715)
T ss_pred ecCHHHHHHHHHHHHH----------------HHhhcCCccccccCcccccccc--cchhHHH----H------------
Confidence 9998876553333221 111110 00000000 0011111 0
Q ss_pred ccchhhHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 024353 153 SSAETSVAQWADEAL-QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLV 231 (268)
Q Consensus 153 ~~~~~~~~~~A~~~~-~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~ 231 (268)
...+++.+ ++..++.|..+ .++++++... ..+++++++.|......++.++|++||+++|+.
T Consensus 233 -------~~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~---------~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~ 295 (715)
T PRK11730 233 -------FTTAKGMVAQKAGKHYPAPM-TAVKTIEAAA---------GLGRDEALELEAKGFVKLAKTNVARALVGIFLN 295 (715)
T ss_pred -------HHHHHHHHHHhhccCCccHH-HHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12233222 34455667776 6677888776 568999999999999999999999999999994
Q ss_pred c
Q 024353 232 D 232 (268)
Q Consensus 232 ~ 232 (268)
+
T Consensus 296 ~ 296 (715)
T PRK11730 296 D 296 (715)
T ss_pred H
Confidence 3
No 75
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.91 E-value=2.9e-24 Score=217.56 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=135.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC--ceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 78 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~--a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa 78 (268)
|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+
T Consensus 108 V~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~-~~A~~llltG~~i~-a~eA~~~GLv 185 (708)
T PRK11154 108 IHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV-STALDMILTGKQLR-AKQALKLGLV 185 (708)
T ss_pred ECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH-HHHHHHHHhCCcCC-HHHHHHCCCC
Confidence 699999999999999999999997 4999999999999999999999999998 89999999999999 9999999999
Q ss_pred ceecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCH--HHHHHHHHhccccch
Q 024353 79 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSV--RQIIEELKKHQSSAE 156 (268)
Q Consensus 79 ~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl--~eI~~~L~~~~~~~~ 156 (268)
+++||++++.+...++.+..+ .+....++.. .+.. .. .+ ..+
T Consensus 186 ~~vv~~~~l~~~a~~~A~~~~-----------------~~~~~~~~~~---~~~~---~~-p~~~~~~------------ 229 (708)
T PRK11154 186 DDVVPHSILLEVAVELAKKGK-----------------PARRPLPVRE---RLLE---GN-PLGRALL------------ 229 (708)
T ss_pred cEecChHHHHHHHHHHHHhcC-----------------CccCcCCchh---hhcc---cC-chhHHHH------------
Confidence 999998876554333322100 0000000000 0000 00 00 000
Q ss_pred hhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 157 TSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 157 ~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
-+.+.+.+++-.+..-.|+..+|++++... ..++.+++..|......++.++|+++|+++|+.++
T Consensus 230 ---~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~---------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~ 294 (708)
T PRK11154 230 ---FKQARKKTLAKTQGNYPAPERILDVVRTGL---------EKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294 (708)
T ss_pred ---HHHHHHHHHHhcccCChHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 111222112222333469999999999876 57899999999999999999999999999999654
No 76
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.91 E-value=5.7e-24 Score=187.67 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=105.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|++||++++ |++|+++||+++
T Consensus 106 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~-~~a~~l~ltg~~~~-a~eA~~~Glv~~ 183 (222)
T PRK05869 106 ITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGP-SRAKELVFSGRFFD-AEEALALGLIDE 183 (222)
T ss_pred EcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCH-HHHHHHHHcCCCcC-HHHHHHCCCCCE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
++|++++.
T Consensus 184 vv~~~~l~------------------------------------------------------------------------ 191 (222)
T PRK05869 184 MVAPDDVY------------------------------------------------------------------------ 191 (222)
T ss_pred eeCchHHH------------------------------------------------------------------------
Confidence 99977642
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVA 189 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~ 189 (268)
+.|.+.+++|++.+|.+++.+|+++++..
T Consensus 192 ~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 192 DAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 22444558899999999999999998764
No 77
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.90 E-value=1.1e-23 Score=192.46 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=120.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|+.|. ..+++|+|||+.++ |++|+++||+++
T Consensus 128 V~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~-~~A~ellltG~~l~-A~eA~~~GLV~~ 205 (287)
T PRK08788 128 VQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGP-KLAEELILSGKLYT-AEELHDMGLVDV 205 (287)
T ss_pred ECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhH-HHHHHHHHcCCCCC-HHHHHHCCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++.+
T Consensus 206 vv~~~el~~----------------------------------------------------------------------- 214 (287)
T PRK08788 206 LVEDGQGEA----------------------------------------------------------------------- 214 (287)
T ss_pred ecCchHHHH-----------------------------------------------------------------------
Confidence 999876432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCCh-hHHHHHHHHh
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRS-DFAEGVRAVL 230 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~-D~~eGv~a~l 230 (268)
.+.+++++|++. |.+....|+..+... ..++.+.+..|...+..+.+.. .-++-+..|.
T Consensus 215 -~a~~~a~~ia~~-~~~~~a~k~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 215 -AVRTFIRKSKRK-LNGWRAMLRARRRVN---------PLSLEELMDITEIWVDAALQLEEKDLRTMERLV 274 (287)
T ss_pred -HHHHHHHHHhcC-ccHHHHHHHHHHhhc---------cCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 123333677766 666666666666554 4578999999877777655433 3466677775
No 78
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.90 E-value=1.9e-23 Score=211.29 Aligned_cols=184 Identities=17% Similarity=0.136 Sum_probs=136.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC--ceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 78 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~--a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa 78 (268)
|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|. ..+++|+|||+.++ |++|+++||+
T Consensus 103 VnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~-~~A~~llltG~~~~-a~eA~~~GLV 180 (699)
T TIGR02440 103 IHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV-STALDMILTGKQLR-AKQALKLGLV 180 (699)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCH-HHHHHHHHcCCcCC-HHHHHhCCCC
Confidence 799999999999999999999986 7999999999999999999999999998 89999999999999 9999999999
Q ss_pred ceecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCC-CCHHHHHHHHHhccccchh
Q 024353 79 TDYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSE-KSVRQIIEELKKHQSSAET 157 (268)
Q Consensus 79 ~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~-~sl~eI~~~L~~~~~~~~~ 157 (268)
+++||++++.+...++..... .......+. .+.-+.. .....+
T Consensus 181 ~~vv~~~~l~~~a~~~A~~~~-----------------~~~~~~~~~------~~~~~~~~~a~~~~------------- 224 (699)
T TIGR02440 181 DDVVPQSILLDTAVEMALKGK-----------------PIRKPLSLQ------ERLLEGTPLGRALL------------- 224 (699)
T ss_pred cEecChhHHHHHHHHHHHhCC-----------------CCCCCccch------hhhcccCchhHHHH-------------
Confidence 999998877654444332100 000000000 0000000 000000
Q ss_pred hHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 158 SVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 158 ~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
.+++.+.+++-....-.|...+++.++.+. ..++.++++.|.+.+..++.++|+++++++|+.++
T Consensus 225 --~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~---------~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~ 289 (699)
T TIGR02440 225 --FDQAAKKTAKKTQGNYPAAERILDVVRQGL---------AQGMQKGLDAEARAFGELVMTPESAALRSIFFATT 289 (699)
T ss_pred --HHHHHHHHHHhcccCChhHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111222222223445677888999999887 67899999999999999999999999999998654
No 79
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=3.6e-23 Score=189.21 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=118.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||||||+++++|++||+++|+ |+ +++++++++.|. ..+++|+|||+.++ |++|+++||+++
T Consensus 125 VnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~-~~A~~llltG~~i~-A~eA~~~GLV~~ 200 (288)
T PRK08290 125 VQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGP-RKAKELLFTGDRLT-ADEAHRLGMVNR 200 (288)
T ss_pred ECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhH-HHHHHHHHcCCCCC-HHHHHHCCCccE
Confidence 699999999999999999999999999999999998 54 346778999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 201 vv~~~~l~~----------------------------------------------------------------------- 209 (288)
T PRK08290 201 VVPRDELEA----------------------------------------------------------------------- 209 (288)
T ss_pred eeCHHHHHH-----------------------------------------------------------------------
Confidence 999766432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhc-CChh
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSS-LRSD 221 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~-~~~D 221 (268)
.+.+++++|++.||.+++.+|+++++.. ....+++++..|.......+ ++++
T Consensus 210 -~a~~~a~~la~~~~~a~~~~K~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 210 -ETLELARRIAAMPPFGLRLTKRAVNQTL--------DAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHccccchh
Confidence 2344458899999999999999999876 12368999999999988876 5554
No 80
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=4.2e-23 Score=182.63 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=111.8
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC-ceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~-a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+++++++..|. ..+++|+|||++++ |+||.++||++
T Consensus 98 v~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~-~~a~~lll~g~~~~-a~eA~~~Glv~ 175 (229)
T PRK06213 98 CTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAVINAEMFD-PEEAVAAGFLD 175 (229)
T ss_pred EcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCH-HHHHHHHHcCcccC-HHHHHHCCCce
Confidence 699999999999999999999999 9999999999999888888888887786 78999999999999 99999999999
Q ss_pred eecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhH
Q 024353 80 DYVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSV 159 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~ 159 (268)
++||++++..
T Consensus 176 ~vv~~~~l~~---------------------------------------------------------------------- 185 (229)
T PRK06213 176 EVVPPEQLLA---------------------------------------------------------------------- 185 (229)
T ss_pred eccChHHHHH----------------------------------------------------------------------
Confidence 9999776432
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHH
Q 024353 160 AQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRV 212 (268)
Q Consensus 160 ~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~ 212 (268)
.|.+++++|.+.||.+++.+|++++... ..++.+.++.|.+.
T Consensus 186 --~a~~~a~~la~~~~~a~~~~K~~l~~~~---------~~~l~~~~~~~~~~ 227 (229)
T PRK06213 186 --RAQAAARELAGLNMGAHAATKLKVRAAA---------LEAIRAAIEGDAAE 227 (229)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HHHHHhchhhhhhh
Confidence 2344458899999999999999999865 35677777777654
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.87 E-value=9.6e-22 Score=199.22 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=131.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+++
T Consensus 109 i~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~-~~A~~llltG~~~~-A~eA~~~GLvd~ 186 (714)
T TIGR02437 109 INGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGA-DNALEWIASGKENR-AEDALKVGAVDA 186 (714)
T ss_pred ECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCH-HHHHHHHHcCCcCC-HHHHHHCCCCcE
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHh----hcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccch
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAK----YSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAE 156 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~----y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~ 156 (268)
+||++++.....++... ++.. ......+...+. .+.+.++|.
T Consensus 187 vv~~~~l~~~a~~~a~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------------- 232 (714)
T TIGR02437 187 VVTADKLGAAALQLLKD------------AINGKLDWKAKRQPKLEPLK--LSKIEAMMS-------------------- 232 (714)
T ss_pred eeChhHHHHHHHHHHHH------------HhhcCCcccccCCCCccccc--ccchHHHHH--------------------
Confidence 99988776544433321 1110 000000000000 011222210
Q ss_pred hhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcC
Q 024353 157 TSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDK 233 (268)
Q Consensus 157 ~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K 233 (268)
-+++.+...+-......+-..+.+.++.+. ..+++++++.|.+....++.+++.+..++.|+.++
T Consensus 233 ---~~~~~~~~~~~~~~~~pap~~~~~~v~~~~---------~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r 297 (714)
T TIGR02437 233 ---FTTAKGMVAQVAGPHYPAPMTAVKTIEKAA---------RFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQ 297 (714)
T ss_pred ---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhH
Confidence 111222122223331112222334555555 46799999999999999999999999999999654
No 82
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.87 E-value=2.2e-21 Score=180.82 Aligned_cols=192 Identities=16% Similarity=0.099 Sum_probs=128.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||.++|++|++|++++|+|++|. ..+++|++||++++ |++|+++||+++
T Consensus 131 VnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~-~rA~~llltGe~~s-A~EA~~~GLVd~ 208 (360)
T TIGR03200 131 VNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGC-EQAMVSGTLCEPWS-AHKAKRLGIIMD 208 (360)
T ss_pred ECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCH-HHHHHHHHhCCcCc-HHHHHHcCChhe
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCC----chhhcchhHHHhhhcCCCCHHHHHHHHHhccccch
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGE----APLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAE 156 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~----~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~ 156 (268)
+||+.+++. .|-..|.-.-+..++.|..-+..+ ..++..+..|..+- ....
T Consensus 209 VVp~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~-------------- 263 (360)
T TIGR03200 209 VVPALKVDG--------KFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGT---IDLS-------------- 263 (360)
T ss_pred ecCchhcCc--------chhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhccc---chHh--------------
Confidence 999887742 011112212222333332111111 12222222233210 0000
Q ss_pred hhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 024353 157 TSVAQWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVL 230 (268)
Q Consensus 157 ~~~~~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l 230 (268)
.+++-..++..++...-|.++.-+++-+|.-. ...+...-..-......- -..+..+|++||-
T Consensus 264 -~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 326 (360)
T TIGR03200 264 -LLDEAVEALCAKLLNTFPECLTKSIEELRKPK---------LFAWNQNKENSRAWLALN-MMNEARTGFRAFN 326 (360)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHHhhhHH---------HHHHHhhhhhhHHHHHhh-cccccchhhHHHh
Confidence 01122233446788888999988888887543 222332222222222222 2377899999997
No 83
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.87 E-value=1.8e-22 Score=175.32 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=139.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||.|+|||+.|..+||+|+||+++.|+..|+.+|+..|+|+--+||+.+|.+++++.|++|++.++ |.||+.+||+.+
T Consensus 133 vHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~-a~EAl~~GLvSr 211 (292)
T KOG1681|consen 133 VHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFS-ADEALDSGLVSR 211 (292)
T ss_pred HHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcc-hhhhhhcCcchh
Confidence 6899999999999999999999999999999999999999999999999997799999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+.|+.+- + .
T Consensus 212 vf~dk~~--l---------------------------------------------------------------------l 220 (292)
T KOG1681|consen 212 VFPDKEE--L---------------------------------------------------------------------L 220 (292)
T ss_pred hcCCHHH--H---------------------------------------------------------------------H
Confidence 9996431 0 0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
.-+..++..|+.+||.+++-||+.+.+++ +.+.++.|.+=..+....+.+.|+.+.+.|-+ .|++++.|.
T Consensus 221 ~~~l~mA~~Ia~KSpvaVqgTK~~L~ysr---------ehsv~~sLnyvatwNms~L~s~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 221 NGALPMAELIASKSPVAVQGTKENLLYSR---------EHSVEESLNYVATWNMSMLLSDDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred hhhHHHHHHhccCCceeeechHHHHHHHh---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCcc
Confidence 11344558899999999999999999998 78999999998888888889999999999999 563344465
No 84
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.86 E-value=2.4e-21 Score=178.13 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=97.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||++|+++||+|||+++++|++||+++|.+|.. ..++++.|. ..+++|+|||++++ |+||+++||+++
T Consensus 134 V~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~-~~A~~llltG~~i~-a~eA~~~GLv~~ 208 (302)
T PRK08272 134 VHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGP-QRAKRLLFTGDCIT-GAQAAEWGLAVE 208 (302)
T ss_pred EccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhH-HHHHHHHHcCCccC-HHHHHHcCCCce
Confidence 6999999999999999999999999999999998666643 245677887 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||++++..
T Consensus 209 vv~~~~l~~----------------------------------------------------------------------- 217 (302)
T PRK08272 209 AVPPEELDE----------------------------------------------------------------------- 217 (302)
T ss_pred ecCHHHHHH-----------------------------------------------------------------------
Confidence 999766432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVA 189 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~ 189 (268)
.+.+++++|++.||.+++.+|+++++..
T Consensus 218 -~a~~la~~ia~~~~~a~~~~K~~l~~~~ 245 (302)
T PRK08272 218 -RTERLVERIAAVPVNQLAMVKLAVNSAL 245 (302)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2344458899999999999999999865
No 85
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.83 E-value=9.8e-21 Score=162.26 Aligned_cols=155 Identities=21% Similarity=0.330 Sum_probs=134.0
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||.+...|..|...||++|||.+++|+.|-..+|+|+...+ .-|.|.+.+ ..++||+|||.+++ +++|+..||+++
T Consensus 132 VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpR-kva~~ML~Tg~Pi~-~eeAl~sGlvsk 208 (287)
T KOG1682|consen 132 VNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPR-KVAAYMLMTGLPIT-GEEALISGLVSK 208 (287)
T ss_pred ecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcch-hHHHHHHHhCCCCc-hHHHHHhhhhhh
Confidence 699999999999999999999999999999999999965433 256676666 89999999999999 899999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.++++..
T Consensus 209 vVp~~el~~e---------------------------------------------------------------------- 218 (287)
T KOG1682|consen 209 VVPAEELDKE---------------------------------------------------------------------- 218 (287)
T ss_pred cCCHHHHHHH----------------------------------------------------------------------
Confidence 9998887531
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+.++...|...|..-+.+.|+.+..+. .++-.+++....+....-++-.|.+|||.+|+ +| |+|+|+
T Consensus 219 --~~~i~~~i~~~srav~slgk~f~y~q~---------~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~-~k-rp~~~~ 285 (287)
T KOG1682|consen 219 --IEEITNAIKAKSRAVISLGKEFYYKQL---------AMSQAEAFSAAQEKMCENFQLGDTKEGIASFF-EK-RPPNWK 285 (287)
T ss_pred --HHHHHHHHhhhHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHhhcccccchHHHHHHHh-cc-CCCCcC
Confidence 223336678888888889999888776 56788899999998888899999999999998 88 799998
Q ss_pred C
Q 024353 241 P 241 (268)
Q Consensus 241 ~ 241 (268)
+
T Consensus 286 h 286 (287)
T KOG1682|consen 286 H 286 (287)
T ss_pred C
Confidence 6
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.82 E-value=1.2e-19 Score=184.39 Aligned_cols=82 Identities=30% Similarity=0.434 Sum_probs=79.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC--ceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLG 78 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~--a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa 78 (268)
|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|. ..+++|+|||++++ |++|+++||+
T Consensus 115 v~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~-~~A~~l~ltG~~i~-a~eA~~~GLV 192 (737)
T TIGR02441 115 ISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV-PAALDMMLTGKKIR-ADRAKKMGIV 192 (737)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH-HHHHHHHHcCCcCC-HHHHHHCCCC
Confidence 699999999999999999999998 5899999999999999999999999998 89999999999999 9999999999
Q ss_pred ceecCC
Q 024353 79 TDYVPS 84 (268)
Q Consensus 79 ~~~v~~ 84 (268)
+++||+
T Consensus 193 d~vv~~ 198 (737)
T TIGR02441 193 DQLVDP 198 (737)
T ss_pred eEecCC
Confidence 999996
No 87
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.81 E-value=1.1e-19 Score=162.18 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=73.6
Q ss_pred CCchhehHHHHHHhhCCEEEEe-CCceEeCcccccccc-CCccHHHHHhcCCCchHHH-HHHhhcCCCCCcHHHHHHcCC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVT-EKTLLAMPENGIGLF-PDVGFSYIAAKGPGGGSVG-AYLGMTGKRISTPSDALFAGL 77 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riat-e~a~f~~pe~~iGl~-Pd~G~s~~L~rl~g~~~~g-~~L~LTG~~l~~a~da~~~GL 77 (268)
|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++| +.+|++..|. ..+ ++|+|||++++ |++|+++||
T Consensus 101 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~vG~-~~a~~~llltG~~~~-a~eA~~~Gl 177 (239)
T PLN02267 101 VTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKIGS-PAARRDVLLRAAKLT-AEEAVEMGI 177 (239)
T ss_pred ECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHcCh-HHHHHHHHHcCCcCC-HHHHHHCCC
Confidence 6999999999999999999998 568999999999997 6654 7788888886 688 69999999999 999999999
Q ss_pred cceecCC
Q 024353 78 GTDYVPS 84 (268)
Q Consensus 78 a~~~v~~ 84 (268)
++++||+
T Consensus 178 v~~vv~~ 184 (239)
T PLN02267 178 VDSAHDS 184 (239)
T ss_pred cceecCC
Confidence 9999985
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.78 E-value=9.2e-19 Score=154.82 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=135.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+++|-|+.|.--||+++|++++.|..|++.+|..|++|++|.+|++.|. ..+-+|+|-|+++. |+||...||++.
T Consensus 114 vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~-~~A~E~ll~~~klt-A~Ea~~~glVsk 191 (266)
T KOG0016|consen 114 VNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGS-ASANEMLLFGEKLT-AQEACEKGLVSK 191 (266)
T ss_pred ecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhch-hhHHHHHHhCCccc-HHHHHhcCchhh
Confidence 6999999999999999999999999999999999999999999999999998 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
.++.+.+.+
T Consensus 192 if~~~tf~~----------------------------------------------------------------------- 200 (266)
T KOG0016|consen 192 IFPAETFNE----------------------------------------------------------------------- 200 (266)
T ss_pred hcChHHHHH-----------------------------------------------------------------------
Confidence 999765432
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVD 232 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~ 232 (268)
-+.+.++++.+.+|.++...|++++... ...+.++.+.|.......+.++|+.+.+++|+..
T Consensus 201 -~v~~~ikq~s~l~p~sl~~~K~L~rs~~---------k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 201 -EVLKKIKQYSKLSPESLLGMKKLLRSNI---------KEELIKANEEECNVLLKQWVSAECLARFKQYLSK 262 (266)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHHhhccChHHHHHHHHHhcc
Confidence 2334457788899999999999999876 4568889999999999999999999999999943
No 89
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.76 E-value=1.1e-18 Score=149.54 Aligned_cols=88 Identities=30% Similarity=0.410 Sum_probs=83.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++|+++.|. ..+.++++||+.++ |+||+++||+++
T Consensus 100 v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~-~~a~~~~l~g~~~~-a~ea~~~Glv~~ 177 (195)
T cd06558 100 VNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGP-ARARELLLTGRRIS-AEEALELGLVDE 177 (195)
T ss_pred ECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCH-HHHHHHHHcCCccC-HHHHHHcCCCCe
Confidence 6999999999999999999999999999999999999999999999999987 89999999999999 999999999999
Q ss_pred ecCCCcchhH
Q 024353 81 YVPSGNLGSL 90 (268)
Q Consensus 81 ~v~~~~l~~~ 90 (268)
+++.+++.+.
T Consensus 178 ~~~~~~l~~~ 187 (195)
T cd06558 178 VVPDEELLAA 187 (195)
T ss_pred ecChhHHHHH
Confidence 9998666543
No 90
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.75 E-value=4.2e-19 Score=153.43 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=125.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|+|.++|||-.|-+.||+.||+++++|+..-.++|-|-.+-++-+|.|++|. ..+++.++.++..+ |++|+++|++|-
T Consensus 123 V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGq-KkArEIwfLcR~Y~-A~eal~MGlVN~ 200 (282)
T COG0447 123 VAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQ-KKAREIWFLCRQYD-AEEALDMGLVNT 200 (282)
T ss_pred EeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhh-hhhHHhhhhhhhcc-HHHHHhcCceee
Confidence 6899999999999999999999999999999999999554455678899996 89999999999999 999999999999
Q ss_pred ecCCCcchhHHHHHHhccCCCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCCCHHHHHHHHHhccccchhhHH
Q 024353 81 YVPSGNLGSLKEALLAVTFSEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEKSVRQIIEELKKHQSSAETSVA 160 (268)
Q Consensus 81 ~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~sl~eI~~~L~~~~~~~~~~~~ 160 (268)
+||.++|+.. ..
T Consensus 201 Vvp~~~LE~e--------------------------------------------------------------------~v 212 (282)
T COG0447 201 VVPHADLEKE--------------------------------------------------------------------TV 212 (282)
T ss_pred eccHHHHHHH--------------------------------------------------------------------HH
Confidence 9998876531 15
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHHhhcCCCCCCCC
Q 024353 161 QWADEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAVLVDKDQNPKWN 240 (268)
Q Consensus 161 ~~A~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~l~~K~~~P~w~ 240 (268)
+|| +.|.++||.|++.-|-+|+.-. ..+...-...-..+.-...+.+.+||-.||+ +| |+|.|.
T Consensus 213 ~W~----~E~l~kSP~AlR~LK~Afnad~----------DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~-eK-R~Pdf~ 276 (282)
T COG0447 213 QWA----REMLAKSPTALRMLKAAFNADC----------DGLAGLQELAGNATLLYYMTDEAQEGRDAFL-EK-RKPDFS 276 (282)
T ss_pred HHH----HHHHhcChHHHHHHHHHhcCCC----------chhhHHHHhcccceEEEEechhhhhhHHHHh-hc-cCCChH
Confidence 799 6789999999999999987421 1222211111222222447999999999999 88 799987
No 91
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.73 E-value=4.9e-18 Score=166.98 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC--ceEeCcccc-ccccCCccHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFA 75 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~--a~f~~pe~~-iGl~Pd~G~s~~L~--rl~g~~~~g~~L~LTG~~l~~a~da~~~ 75 (268)
|||+|+|||++|+++||+||++++ ++|++||++ +|++|++|++.+++ +..|+ .++++|+|||++++ |++|+++
T Consensus 126 VnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~-~~A~~llltG~~i~-A~eA~~~ 203 (546)
T TIGR03222 126 VNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRR-DHADIFCTIEEGVR-GKRAKEW 203 (546)
T ss_pred ECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCH-HHHHHHHHcCCCcc-HHHHHHc
Confidence 699999999999999999999996 799999997 99999999988887 57787 79999999999999 9999999
Q ss_pred CCcceecCCCcch
Q 024353 76 GLGTDYVPSGNLG 88 (268)
Q Consensus 76 GLa~~~v~~~~l~ 88 (268)
||++++||++++.
T Consensus 204 GLV~~vv~~~~l~ 216 (546)
T TIGR03222 204 RLVDEVVKPSQFD 216 (546)
T ss_pred CCceEEeChHHHH
Confidence 9999999987654
No 92
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.73 E-value=6e-18 Score=166.71 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=80.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC--ceEeCcccc-ccccCCccHHHHHh--cCCCchHHHHHHhhcCCCCCcHHHHHHc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK--TLLAMPENG-IGLFPDVGFSYIAA--KGPGGGSVGAYLGMTGKRISTPSDALFA 75 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~--a~f~~pe~~-iGl~Pd~G~s~~L~--rl~g~~~~g~~L~LTG~~l~~a~da~~~ 75 (268)
|||+|+|||++|+++|||||++++ ++|++||++ +|++|++|++++|+ ++.|. .++++|+|||++++ |++|+++
T Consensus 130 VnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~-~~A~~llltG~~i~-AeeA~~~ 207 (550)
T PRK08184 130 VNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRR-DLADIFCTIEEGVR-GKRAVDW 207 (550)
T ss_pred ECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCH-HHHHHHHHhCCccc-HHHHHHc
Confidence 699999999999999999999987 899999997 99999999999888 67887 79999999999999 9999999
Q ss_pred CCcceecCCCcchh
Q 024353 76 GLGTDYVPSGNLGS 89 (268)
Q Consensus 76 GLa~~~v~~~~l~~ 89 (268)
||++++||++++..
T Consensus 208 GLVd~vv~~d~l~~ 221 (550)
T PRK08184 208 RLVDEVVKPSKFDA 221 (550)
T ss_pred CCccEeeCHHHHHH
Confidence 99999999876543
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.16 E-value=2.7e-11 Score=104.23 Aligned_cols=82 Identities=10% Similarity=-0.119 Sum_probs=69.6
Q ss_pred chhehHHHHHHhhCCEEEEeCCceEeCccccccccCCc--------------cHHHHHhcCCCch-HHHHHHhhcCCCCC
Q 024353 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV--------------GFSYIAAKGPGGG-SVGAYLGMTGKRIS 67 (268)
Q Consensus 3 G~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~--------------G~s~~L~rl~g~~-~~g~~L~LTG~~l~ 67 (268)
|+|+|||+.|+++||++|++++++|++++...|..+.. +....+++..|.. ..+..++++|+.++
T Consensus 70 G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~ 149 (187)
T cd07020 70 ARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLT 149 (187)
T ss_pred CCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeec
Confidence 99999999999999999999999999999985544432 2445677766741 37889999999999
Q ss_pred cHHHHHHcCCcceecCCC
Q 024353 68 TPSDALFAGLGTDYVPSG 85 (268)
Q Consensus 68 ~a~da~~~GLa~~~v~~~ 85 (268)
|++|+++||+++++++.
T Consensus 150 -a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 150 -AEEALKLGVIDLIAADL 166 (187)
T ss_pred -HHHHHHcCCcccccCCH
Confidence 99999999999999875
No 94
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.76 E-value=4.9e-09 Score=89.23 Aligned_cols=85 Identities=16% Similarity=-0.043 Sum_probs=67.8
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHH--------HHhcCCC--chHHHHHHhhcCCCCCcHH
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSY--------IAAKGPG--GGSVGAYLGMTGKRISTPS 70 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~--------~L~rl~g--~~~~g~~L~LTG~~l~~a~ 70 (268)
|||.|.|||+.|+++||++++++++.|+.+....+..+...... .+++..| . .....++.+|..++ |+
T Consensus 78 v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~-~~~~~~l~~g~~~~-a~ 155 (177)
T cd07014 78 GGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTP-EQQIDKIAQGGVWT-GQ 155 (177)
T ss_pred ECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHhHHHhcCcCeEe-HH
Confidence 58999999999999999999999999999877766433322222 4444444 3 56778889999999 99
Q ss_pred HHHHcCCcceecCCCcc
Q 024353 71 DALFAGLGTDYVPSGNL 87 (268)
Q Consensus 71 da~~~GLa~~~v~~~~l 87 (268)
+|++.||++.+.+.+++
T Consensus 156 ~A~~~GLVD~v~~~~e~ 172 (177)
T cd07014 156 DAKANGLVDSLGSFDDA 172 (177)
T ss_pred HHHHcCCcccCCCHHHH
Confidence 99999999999986554
No 95
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.59 E-value=8.6e-08 Score=80.13 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccH---------------HHHHhcCCCch-HHHHHHhhcCC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF---------------SYIAAKGPGGG-SVGAYLGMTGK 64 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~---------------s~~L~rl~g~~-~~g~~L~LTG~ 64 (268)
++|.|.|+|+.|+++||+|+++++++|.++....|..+.... ...+.+..|.. .....++.++.
T Consensus 65 v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 65 IDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred EcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 579999999999999999999999999998877666554321 22255555521 45556666677
Q ss_pred CCCcHHHHHHcCCccee
Q 024353 65 RISTPSDALFAGLGTDY 81 (268)
Q Consensus 65 ~l~~a~da~~~GLa~~~ 81 (268)
.++ ++||+++||++++
T Consensus 145 ~l~-a~eA~~~GliD~v 160 (160)
T cd07016 145 WLT-AQEAVELGFADEI 160 (160)
T ss_pred ECc-HHHHHHcCCCCcC
Confidence 899 9999999999863
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.95 E-value=4.2e-06 Score=83.83 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceE------eCcc------ccccccCCccHHHHHhc--------------------
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLL------AMPE------NGIGLFPDVGFSYIAAK-------------------- 48 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f------~~pe------~~iGl~Pd~G~s~~L~r-------------------- 48 (268)
|+|.|.+||.-|+++||.++|++++.+ +++. .++|+.|+...+..+.+
T Consensus 385 ~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~ 464 (584)
T TIGR00705 385 MGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVE 464 (584)
T ss_pred ECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999988 6663 68999998776654443
Q ss_pred --------CCCchHH-----HHHHhhcCCCCCcHHHHHHcCCcceecC
Q 024353 49 --------GPGGGSV-----GAYLGMTGKRISTPSDALFAGLGTDYVP 83 (268)
Q Consensus 49 --------l~g~~~~-----g~~L~LTG~~l~~a~da~~~GLa~~~v~ 83 (268)
.++. ++ .....++|+.++ |++|+++||++++..
T Consensus 465 ~~y~~F~~~Va~-~R~l~~e~v~~ia~Grv~t-g~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 465 AGYRRFLSVVSA-GRNLTPTQVDKVAQGRVWT-GEDAVSNGLVDALGG 510 (584)
T ss_pred HHHHHHHHHHHh-hCCCCHHHHHHHHhCCCcC-HHHHHHcCCcccCCC
Confidence 2222 23 667888999999 999999999999943
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=97.61 E-value=7.7e-05 Score=62.06 Aligned_cols=80 Identities=15% Similarity=-0.033 Sum_probs=56.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCcc-H-----HHHH----hcCC-------Cc-hHHHHHHhhc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVG-F-----SYIA----AKGP-------GG-GSVGAYLGMT 62 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G-~-----s~~L----~rl~-------g~-~~~g~~L~LT 62 (268)
++|.|.|+|.-|+++||.|++++++.|++.....+.....+ . ...+ .++. |. ......+.-+
T Consensus 64 ~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~ 143 (161)
T cd00394 64 VGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK 143 (161)
T ss_pred ECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence 47999999999999999999999999999887765543210 0 0111 1111 10 0123456667
Q ss_pred CCCCCcHHHHHHcCCccee
Q 024353 63 GKRISTPSDALFAGLGTDY 81 (268)
Q Consensus 63 G~~l~~a~da~~~GLa~~~ 81 (268)
|..++ +++|+++||++++
T Consensus 144 ~~~~~-a~eA~~~GLvD~i 161 (161)
T cd00394 144 DLVLT-AQEALEYGLVDAL 161 (161)
T ss_pred CcEEc-HHHHHHcCCcCcC
Confidence 88999 9999999999863
No 98
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=97.48 E-value=0.00019 Score=61.42 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccH--------HHH------HhcCCCchHHHHHH-hhcCC-
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF--------SYI------AAKGPGGGSVGAYL-GMTGK- 64 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~--------s~~------L~rl~g~~~~g~~L-~LTG~- 64 (268)
|+|.|.++|+-|+++||++++++++.++.+..- +..|. +.. +.+..|+ .....- +++-.
T Consensus 65 V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr-~~~~a~~mv~~~~ 139 (178)
T cd07021 65 VNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGR-DPDIAEAMVDKDI 139 (178)
T ss_pred ECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHhhhhc
Confidence 589999999999999999999999999987443 32222 112 2222343 222222 22322
Q ss_pred -------------CCCcHHHHHHcCCcceecCC
Q 024353 65 -------------RISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 65 -------------~l~~a~da~~~GLa~~~v~~ 84 (268)
.|+ ++||++.|+++..+++
T Consensus 140 ~v~~~~~~~~~~l~lt-a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 140 EVPGVGIKGGELLTLT-ADEALKVGYAEGIAGS 171 (178)
T ss_pred ccccccccccceeeeC-HHHHHHhCCeEEEECC
Confidence 699 9999999999888773
No 99
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.33 E-value=0.00011 Score=64.30 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCcccccccc----------CCccHHHHHhcCCCc------------------
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF----------PDVGFSYIAAKGPGG------------------ 52 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~----------Pd~G~s~~L~rl~g~------------------ 52 (268)
++|.|.|+|+.|+++||++++++++.++ .+|++ +..|..+.+.+..|.
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~g----siGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~ 152 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTG----SIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQ 152 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEE----EeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHH
Confidence 5899999999999999999999999997 56655 555544433332110
Q ss_pred --------------------hHHHHHHhhcCCCCCcHHHHHHcCCcceecCCC
Q 024353 53 --------------------GSVGAYLGMTGKRISTPSDALFAGLGTDYVPSG 85 (268)
Q Consensus 53 --------------------~~~g~~L~LTG~~l~~a~da~~~GLa~~~v~~~ 85 (268)
-.-.+.-...|..+. +++|++.||++++...+
T Consensus 153 ~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~-~~~A~~~GLvD~i~~~~ 204 (211)
T cd07019 153 LSIENGYKRFITLVADARHSTPEQIDKIAQGHVWT-GQDAKANGLVDSLGDFD 204 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEe-HHHHHHcCCcccCCCHH
Confidence 001112244577888 89999999998876643
No 100
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=96.60 E-value=0.0031 Score=55.27 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
++|.|.|||+.|+++||++++++++.|+.
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~ 108 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGS 108 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEe
Confidence 58999999999999999999999999864
No 101
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.18 E-value=0.0056 Score=53.33 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=44.2
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccH----H-------HHHhcC-----------CCc-hHHHH
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGF----S-------YIAAKG-----------PGG-GSVGA 57 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~----s-------~~L~rl-----------~g~-~~~g~ 57 (268)
+.|.|.+.|.-|++++ +++.+|++|++++++.+..|+ . ..+.++ .|. -....
T Consensus 96 ~~G~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~ 170 (200)
T PRK00277 96 CIGQAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIE 170 (200)
T ss_pred EEeEeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 3689999999888873 334444455555555433221 1 111111 111 01111
Q ss_pred HHhhcCCCCCcHHHHHHcCCcceecCC
Q 024353 58 YLGMTGKRISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 58 ~L~LTG~~l~~a~da~~~GLa~~~v~~ 84 (268)
.+.-.+..++ |+||+++||++.++.+
T Consensus 171 ~~~~~~~~ls-a~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 171 KDTDRDNFMS-AEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHhhCCcccc-HHHHHHcCCccEEeec
Confidence 2222355899 9999999999999875
No 102
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=95.64 E-value=0.032 Score=48.57 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
++|.|.|+|..|+++||.+++++++.++.
T Consensus 68 v~g~a~s~g~~la~aaD~i~a~p~a~vg~ 96 (207)
T TIGR00706 68 MGGVAASGGYYIAMAADEIVANPGTITGS 96 (207)
T ss_pred ECCccchHHHHHHhcCCEEEECCCCeEEe
Confidence 47999999999999999999999998754
No 103
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.21 E-value=0.23 Score=44.97 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=46.5
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchH-HHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGS-VGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~-~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
-|.+.|||+-....||++++.+++.|++ .+.=|++..+-+-..... .+.++ +++ +.++.+.|+++.
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~-----~~~-a~~l~~~g~iD~ 210 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM-----KIT-AGELLEMGVVDK 210 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc-----CCC-HHHHHHCCCCcE
Confidence 3677777777778999999999997764 222233333322111112 23333 779 999999999999
Q ss_pred ecCCC
Q 024353 81 YVPSG 85 (268)
Q Consensus 81 ~v~~~ 85 (268)
+||+.
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99854
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=95.01 E-value=0.048 Score=46.50 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=55.5
Q ss_pred chhehHHHHHHhhCCEEEEeCCceEeCccccccccCC----c-c---HHHHHhcC------CCch-HHHHHHhhcCCCCC
Q 024353 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPD----V-G---FSYIAAKG------PGGG-SVGAYLGMTGKRIS 67 (268)
Q Consensus 3 G~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd----~-G---~s~~L~rl------~g~~-~~g~~L~LTG~~l~ 67 (268)
|.|..+|.-|+++||.+++.++++++......|+.++ . . .+..+.++ .|+. ..+..+.--...++
T Consensus 70 ~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lt 149 (172)
T cd07015 70 ASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 149 (172)
T ss_pred CeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcC
Confidence 7888899999999999999999999987775443221 0 0 12222222 2210 33444444456899
Q ss_pred cHHHHHHcCCcceecCC
Q 024353 68 TPSDALFAGLGTDYVPS 84 (268)
Q Consensus 68 ~a~da~~~GLa~~~v~~ 84 (268)
++||+++|++++++.+
T Consensus 150 -a~EA~~~G~iD~ia~~ 165 (172)
T cd07015 150 -PEEALKYGVIEVVARD 165 (172)
T ss_pred -HHHHHHcCCceeeeCC
Confidence 9999999999999875
No 105
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.94 E-value=0.055 Score=52.08 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHHH---hhcCCCCCCCC
Q 024353 164 DEALQGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRAV---LVDKDQNPKWN 240 (268)
Q Consensus 164 ~~~~~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a~---l~~K~~~P~w~ 240 (268)
.+++++|...+|.++..+|+.++... .+....+..+......++.++|+.|++++| + +| +.|.|.
T Consensus 227 ~~~~~~i~~~~p~av~~~k~~~~~~~----------~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~-~k-r~~~wa 294 (401)
T PLN02157 227 EEQLKKLLTDDPSVVESCLEKCAEVA----------HPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEA-GR-RKDTWC 294 (401)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccc----------CCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhh-cc-cchHHH
Confidence 35567888899999999999987532 234566777778888899999999999999 5 66 578888
Q ss_pred CCC
Q 024353 241 PAS 243 (268)
Q Consensus 241 ~~~ 243 (268)
.++
T Consensus 295 ~~~ 297 (401)
T PLN02157 295 ITT 297 (401)
T ss_pred HHH
Confidence 543
No 106
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=94.70 E-value=0.024 Score=49.26 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
++|.|.|+|+.|+++||++++++.+.|+.
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 58999999999999999999999998864
No 107
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=94.53 E-value=0.056 Score=47.03 Aligned_cols=82 Identities=15% Similarity=-0.053 Sum_probs=51.3
Q ss_pred CCchhehHHHHHHhhCCE--EEEeCCceEeCccccccccCCccHH----HHHhcCCCchHHHHHHhhcC-----------
Q 024353 1 MDGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFS----YIAAKGPGGGSVGAYLGMTG----------- 63 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~Pd~G~s----~~L~rl~g~~~~g~~L~LTG----------- 63 (268)
+.|.|.+.|.-|+++|+- |++.++++|.+....-|+.....-. ..+-++... -...|---||
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~-i~~~~a~~tg~~~~~i~~~~~ 166 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSE-LNDIIAKETGQELDKVEKDTD 166 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHH-HHHHHHHHhCcCHHHHHHhhh
Confidence 358888899999999985 8999999987755443332111100 011111110 1222223344
Q ss_pred --CCCCcHHHHHHcCCcceecCC
Q 024353 64 --KRISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 64 --~~l~~a~da~~~GLa~~~v~~ 84 (268)
..++ ++||+++||++++++.
T Consensus 167 ~d~~lt-a~EA~~yGliD~I~~~ 188 (197)
T PRK14512 167 RDFWLD-SSSAVKYGLVFEVVET 188 (197)
T ss_pred cCcccC-HHHHHHcCCccEeecC
Confidence 4789 9999999999999974
No 108
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=94.45 E-value=0.051 Score=45.63 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=44.6
Q ss_pred CchhehHHHHHHhhCC--EEEEeCCceEeCccccccccCCccHHH----HHhcC-----------CCc-hHHHHHHhhcC
Q 024353 2 DGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFSY----IAAKG-----------PGG-GSVGAYLGMTG 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d--~riate~a~f~~pe~~iGl~Pd~G~s~----~L~rl-----------~g~-~~~g~~L~LTG 63 (268)
.|.|.++|.-|++++| .|++.+++++.+....-|......-.. .+.++ .|. -..-..++=.+
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 145 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD 145 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 5888999999999999 677778877766443222211100000 01111 111 01112222335
Q ss_pred CCCCcHHHHHHcCCccee
Q 024353 64 KRISTPSDALFAGLGTDY 81 (268)
Q Consensus 64 ~~l~~a~da~~~GLa~~~ 81 (268)
..++ |+||+++||++++
T Consensus 146 ~~~s-a~eA~~~GliD~i 162 (162)
T cd07013 146 TWLS-AREAVEYGFADTI 162 (162)
T ss_pred cccc-HHHHHHcCCCCcC
Confidence 5669 9999999999863
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=94.18 E-value=0.081 Score=46.32 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=52.9
Q ss_pred CchhehHHHHHHhhCC--EEEEeCCceEeCccccc-cccCCccHH------------------HHHhcCCCch-HHHHHH
Q 024353 2 DGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGI-GLFPDVGFS------------------YIAAKGPGGG-SVGAYL 59 (268)
Q Consensus 2 nG~~~GgG~~La~~~d--~riate~a~f~~pe~~i-Gl~Pd~G~s------------------~~L~rl~g~~-~~g~~L 59 (268)
.|.|.+.|.-|+++|| .|++.++|+|.+..... |.+ .|.. ..+.+..|.. .....+
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5888999999999998 58999999998877653 211 1211 1112212210 122223
Q ss_pred hhcCCCCCcHHHHHHcCCcceecCC
Q 024353 60 GMTGKRISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 60 ~LTG~~l~~a~da~~~GLa~~~v~~ 84 (268)
.=.+..++ |+||+++||++.++.+
T Consensus 179 ~~~~~~lt-a~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLT-AEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCcccc-HHHHHHcCCccEEcCc
Confidence 33467899 9999999999999874
No 110
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=93.45 E-value=0.14 Score=44.71 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=52.7
Q ss_pred CchhehHHHHHHhhCC--EEEEeCCceEeCcccccccc-CCccH----HHHHhcCCCchHHHHHHhhcC-----------
Q 024353 2 DGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLF-PDVGF----SYIAAKGPGGGSVGAYLGMTG----------- 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d--~riate~a~f~~pe~~iGl~-Pd~G~----s~~L~rl~g~~~~g~~L~LTG----------- 63 (268)
.|.|.+.|.-|.++++ -|++.++++|.+.....|++ ....- ...+-++... -...|.--||
T Consensus 96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~-~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRET-ITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCcCHHHHHHHhh
Confidence 4788888888888888 69999999999977765532 11110 1112121110 1223333344
Q ss_pred --CCCCcHHHHHHcCCcceecCCC
Q 024353 64 --KRISTPSDALFAGLGTDYVPSG 85 (268)
Q Consensus 64 --~~l~~a~da~~~GLa~~~v~~~ 85 (268)
..++ |+||+++||+++++.+.
T Consensus 175 r~~~lt-a~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 175 RDVFMS-ATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCccCC-HHHHHHcCCCcEEeecC
Confidence 3689 99999999999998754
No 111
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=93.12 E-value=0.17 Score=44.83 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=50.8
Q ss_pred CchhehHHHHHHhhCCE--EEEeCCceEeCccccccccCCcc----HHHHHhcCCCchHHHHHHhhcC------------
Q 024353 2 DGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVG----FSYIAAKGPGGGSVGAYLGMTG------------ 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~Pd~G----~s~~L~rl~g~~~~g~~L~LTG------------ 63 (268)
.|.|.+.|.-|.++++. |++.++|++.+....-|...... ....+-++... -...|---||
T Consensus 120 ~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~-i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 120 TGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKE-LYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHH-HHHHHHHHHCcCHHHHHHHhhc
Confidence 47788888889999986 89999999988776544322211 01112222110 1111222233
Q ss_pred -CCCCcHHHHHHcCCcceecCC
Q 024353 64 -KRISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 64 -~~l~~a~da~~~GLa~~~v~~ 84 (268)
..++ |+||+++||+++++..
T Consensus 199 d~wmt-A~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 199 DYWMT-AQEAKEYGMIDEVLIK 219 (221)
T ss_pred CccCC-HHHHHHcCCccEEeec
Confidence 4788 9999999999999864
No 112
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=92.98 E-value=0.17 Score=43.69 Aligned_cols=81 Identities=12% Similarity=-0.066 Sum_probs=49.7
Q ss_pred CchhehHHHHHHhhCC--EEEEeCCceEeCccccccccCCccHH----HHHhcCCC-----------c-hHHHHHHhhcC
Q 024353 2 DGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS----YIAAKGPG-----------G-GSVGAYLGMTG 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d--~riate~a~f~~pe~~iGl~Pd~G~s----~~L~rl~g-----------~-~~~g~~L~LTG 63 (268)
.|.|.+.|.-|+++++ .|++.++++|.+.+..-|......-. ..+.++.. . -..-..+.-.+
T Consensus 92 ~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~ 171 (191)
T TIGR00493 92 IGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERD 171 (191)
T ss_pred EEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 4778888887877665 69999999999976654432211111 12222221 1 01122222335
Q ss_pred CCCCcHHHHHHcCCcceecC
Q 024353 64 KRISTPSDALFAGLGTDYVP 83 (268)
Q Consensus 64 ~~l~~a~da~~~GLa~~~v~ 83 (268)
..++ |+||+++||++.++.
T Consensus 172 ~~lt-a~EA~~~GliD~ii~ 190 (191)
T TIGR00493 172 FFMS-AEEAKEYGLIDSVLT 190 (191)
T ss_pred ccCc-HHHHHHcCCccEEec
Confidence 5889 999999999999875
No 113
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=92.61 E-value=0.98 Score=42.24 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=43.7
Q ss_pred chhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcceec
Q 024353 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 82 (268)
Q Consensus 3 G~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~~v 82 (268)
|.+.|||+--...||++++.+++.|+ .++.-|++-.|-+-.. .+...+ .-..++ +.++.+.|+++.+|
T Consensus 198 Geg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~---~a~~aa-e~~~it-a~~l~~~g~iD~II 265 (319)
T PRK05724 198 GEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS---KAPEAA-EAMKIT-AQDLKELGIIDEII 265 (319)
T ss_pred CCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch---hHHHHH-HHcCCC-HHHHHHCCCceEec
Confidence 55655554444459999998888764 4444344444433221 222111 145688 99999999999999
Q ss_pred CC
Q 024353 83 PS 84 (268)
Q Consensus 83 ~~ 84 (268)
|.
T Consensus 266 ~E 267 (319)
T PRK05724 266 PE 267 (319)
T ss_pred cC
Confidence 84
No 114
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=92.57 E-value=0.95 Score=42.27 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=43.0
Q ss_pred chhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCC--CchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGP--GGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 3 G~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~--g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|.+-|||+--...||++++.+++.|+. ++.-|++-.|-|=. .. ..+.+ .+++ +.++.+.|+++.
T Consensus 198 GeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd~~~a~-~aae~-----~~~t-a~~l~~~G~iD~ 263 (316)
T TIGR00513 198 GEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKDASKAP-KAAEA-----MKIT-APDLKELGLIDS 263 (316)
T ss_pred cccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccchhhHH-HHHHH-----ccCC-HHHHHHCCCCeE
Confidence 666555554444699999999987653 33333333332211 11 23333 5678 999999999999
Q ss_pred ecCC
Q 024353 81 YVPS 84 (268)
Q Consensus 81 ~v~~ 84 (268)
+||.
T Consensus 264 II~e 267 (316)
T TIGR00513 264 IIPE 267 (316)
T ss_pred eccC
Confidence 9984
No 115
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=92.53 E-value=0.066 Score=45.44 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=51.2
Q ss_pred CchhehHHHHHHhhCCE--EEEeCCceEeCccccccccCCccH----HHHHhcCCCchHHHHHHhhcC------------
Q 024353 2 DGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGF----SYIAAKGPGGGSVGAYLGMTG------------ 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~Pd~G~----s~~L~rl~g~~~~g~~L~LTG------------ 63 (268)
.|.|.+.|.-|+++|+. |++++++.|.+.+...+......- ...+.++... -...|.--||
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~-~~~~~~~~tg~~~~~i~~~~~~ 160 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNER-IANIYAERTGLSKEEIEELMDR 160 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH-HHHHHHHHHTS-HHHHHHHCSS
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHHHhC
Confidence 58889999999999999 899999999998887666431111 1112111110 1122222233
Q ss_pred -CCCCcHHHHHHcCCcceecCC
Q 024353 64 -KRISTPSDALFAGLGTDYVPS 84 (268)
Q Consensus 64 -~~l~~a~da~~~GLa~~~v~~ 84 (268)
..++ ++||+++||+++++.+
T Consensus 161 ~~~l~-a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 161 DTWLS-AEEALEYGIIDEIIES 181 (182)
T ss_dssp TEEEE-HHHHHHHTSSSEEESS
T ss_pred Ccccc-HHHHHHcCCCCEeccC
Confidence 3678 9999999999998763
No 116
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=92.47 E-value=0.92 Score=42.46 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=45.1
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCccee
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 81 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~~ 81 (268)
-|.+-|||+-....||++++.+++.|+. .+.=|++-.|=+-. ..+.. +--..+|. ++|++++|+++.+
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d~---~~a~~-aA~~~~it-a~dL~~~giiD~i 267 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKDS---KKSLD-AAEALKIT-SEDLKVLGIIDEI 267 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcch---hhHHH-HHHHcCCC-HHHHHhCCCCeEe
Confidence 3667666654445699999999997754 32223333332221 12221 22335788 9999999999999
Q ss_pred cCC
Q 024353 82 VPS 84 (268)
Q Consensus 82 v~~ 84 (268)
||.
T Consensus 268 i~E 270 (322)
T CHL00198 268 IPE 270 (322)
T ss_pred ccC
Confidence 984
No 117
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.26 E-value=0.78 Score=47.16 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=46.8
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCccee
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDY 81 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~~ 81 (268)
-|.|.|||+-....||++++.+++.|+ +.+.-|++-.|-|-.. .+. -+-...+|. ++|++++|+++.+
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~---~A~-eAAe~lkiT-a~dL~~lGiiD~I 355 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK---AAP-KAAEKLRIT-AQELCRLQIADGI 355 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc---cHH-HHHHHcCCC-HHHHHhCCCCeee
Confidence 467766776666679999999998654 4433344444433221 111 133446788 9999999999999
Q ss_pred cCC
Q 024353 82 VPS 84 (268)
Q Consensus 82 v~~ 84 (268)
||.
T Consensus 356 IpE 358 (762)
T PLN03229 356 IPE 358 (762)
T ss_pred ccC
Confidence 984
No 118
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=92.06 E-value=0.32 Score=42.50 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=53.6
Q ss_pred CchhehHHHHHHhhCCE--EEEeCCceEeCccccccccCCccHHHH-------HhcCCCchHHHHHHhhcCC--------
Q 024353 2 DGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGFSYI-------AAKGPGGGSVGAYLGMTGK-------- 64 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~Pd~G~s~~-------L~rl~g~~~~g~~L~LTG~-------- 64 (268)
.|.|.+.|.-|+++++- |++.+++++.+....-|+. |...- |-++... -...|.--||.
T Consensus 93 ~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~---G~a~di~~~a~el~~~~~~-l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 93 VGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR---GNTPDLEVQAKEVLFLRDT-LVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC---CCHHHHHHHHHHHHHHHHH-HHHHHHHHHCcCHHHHHHH
Confidence 57788888888888885 9999999999977765542 21111 1111111 12333334553
Q ss_pred -----CCCcHHHHHHcCCcceecCCCc
Q 024353 65 -----RISTPSDALFAGLGTDYVPSGN 86 (268)
Q Consensus 65 -----~l~~a~da~~~GLa~~~v~~~~ 86 (268)
.++ |+||+++||+++++++..
T Consensus 169 ~~rd~~ms-a~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 169 MERDYFMS-PEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred hccCcccC-HHHHHHcCCCcEEeccCC
Confidence 788 999999999999998654
No 119
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=91.96 E-value=0.14 Score=43.29 Aligned_cols=79 Identities=13% Similarity=-0.031 Sum_probs=51.2
Q ss_pred CchhehHHHHHHhhCC--EEEEeCCceEeCccccccccCCccHH----HHHhcC-----------CCch-HHHHHHhhcC
Q 024353 2 DGVTMGFGIGISGHGR--YRIVTEKTLLAMPENGIGLFPDVGFS----YIAAKG-----------PGGG-SVGAYLGMTG 63 (268)
Q Consensus 2 nG~~~GgG~~La~~~d--~riate~a~f~~pe~~iGl~Pd~G~s----~~L~rl-----------~g~~-~~g~~L~LTG 63 (268)
.|.|.++|.-|++++| -|++.++++|.+.+...+..-...-. ..+-++ .|.. ..-..++-.+
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 5889999999999999 79999999999988766554321100 001111 1110 1112222356
Q ss_pred CCCCcHHHHHHcCCccee
Q 024353 64 KRISTPSDALFAGLGTDY 81 (268)
Q Consensus 64 ~~l~~a~da~~~GLa~~~ 81 (268)
..++ ++||+++||++.+
T Consensus 155 ~~lt-a~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMS-AEEAKEYGLIDKI 171 (171)
T ss_pred cccc-HHHHHHcCCCccC
Confidence 6789 9999999999863
No 120
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=91.50 E-value=1.6 Score=42.20 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=41.5
Q ss_pred chhehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcceec
Q 024353 3 GVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTDYV 82 (268)
Q Consensus 3 G~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~~v 82 (268)
|-+-|||+-....||++++.+++.|++ .+.-|++-.|-+-...-..+.. -..++ +.|+.+.|+++.+|
T Consensus 268 GeGgSGGAlalg~aD~VlMle~A~ysV-------isPEgaAsILwkd~~~A~eAAe----alkit-A~dL~~~GiID~II 335 (431)
T PLN03230 268 GEGGSGGALAIGCGNRMLMMENAVYYV-------ASPEACAAILWKSAAAAPKAAE----ALRIT-AAELVKLGVVDEIV 335 (431)
T ss_pred CCCCcHHHHHhhcCCEEEEecCCEEEe-------cCHHHHHHHHhccccchHHHHH----HcCCC-HHHHHhCCCCeEec
Confidence 444334433334689999999986643 3333333333221110022222 34899 99999999999999
Q ss_pred CC
Q 024353 83 PS 84 (268)
Q Consensus 83 ~~ 84 (268)
|.
T Consensus 336 ~E 337 (431)
T PLN03230 336 PE 337 (431)
T ss_pred cC
Confidence 84
No 121
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=91.34 E-value=0.33 Score=44.45 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=44.1
Q ss_pred Cch--hehHHHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCch-HHHHHHhhcCCCCCcHHHHHHcCCc
Q 024353 2 DGV--TMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGG-SVGAYLGMTGKRISTPSDALFAGLG 78 (268)
Q Consensus 2 nG~--~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~-~~g~~L~LTG~~l~~a~da~~~GLa 78 (268)
-|+ |.||+..++..||++|+++++++++.- |. .+-...|.. --...-+|.-+.+- +...+..|++
T Consensus 144 ~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aG------P~-----VIe~~~G~e~~~~~d~~l~~~~lG-G~~~~~sG~~ 211 (274)
T TIGR03133 144 GGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSG------PE-----VIEQEAGVEEFDSRDRALVWRTTG-GKHRFLSGDA 211 (274)
T ss_pred eCCCCcchHHHHHHhcCCEEEEeCCcEEeccC------HH-----HHHHhcCCCccCHHHhcccccccc-hHhHhhcccc
Confidence 477 899999999999999999988665411 11 011111100 01111222223455 5678889999
Q ss_pred ceecCCC
Q 024353 79 TDYVPSG 85 (268)
Q Consensus 79 ~~~v~~~ 85 (268)
+.+|+++
T Consensus 212 D~~v~dd 218 (274)
T TIGR03133 212 DVLVEDD 218 (274)
T ss_pred eEEeCCH
Confidence 9999865
No 122
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=89.86 E-value=0.57 Score=40.75 Aligned_cols=82 Identities=16% Similarity=0.017 Sum_probs=50.7
Q ss_pred CchhehHHHHHHhhCCE--EEEeCCceEeCccccccccCCccH----HHHHhcCCCchHHHHHHhhcCC-----------
Q 024353 2 DGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLFPDVGF----SYIAAKGPGGGSVGAYLGMTGK----------- 64 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~Pd~G~----s~~L~rl~g~~~~g~~L~LTG~----------- 64 (268)
.|.|.+.|.-|+++++- |.+.+++++.+....-|..-...- .-.|-++... -...|---||+
T Consensus 91 ~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~-~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 91 VGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKER-LNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHH-HHHHHHHHHCcCHHHHHHHhhc
Confidence 47788888888888874 889999999887664333211110 1112111111 12222223443
Q ss_pred --CCCcHHHHHHcCCcceecCCC
Q 024353 65 --RISTPSDALFAGLGTDYVPSG 85 (268)
Q Consensus 65 --~l~~a~da~~~GLa~~~v~~~ 85 (268)
.++ |+||+++||++++++..
T Consensus 170 d~~ms-a~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMS-PSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCC-HHHHHHcCCCcEEeccC
Confidence 688 99999999999999864
No 123
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=86.77 E-value=1.4 Score=39.16 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=52.4
Q ss_pred CchhehHHHHHHhhCCE--EEEeCCceEeCcccccccc---CCccH-HHHHhcCCCchHHHHHHhhcCC-----------
Q 024353 2 DGVTMGFGIGISGHGRY--RIVTEKTLLAMPENGIGLF---PDVGF-SYIAAKGPGGGSVGAYLGMTGK----------- 64 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~--riate~a~f~~pe~~iGl~---Pd~G~-s~~L~rl~g~~~~g~~L~LTG~----------- 64 (268)
.|.|.+.|.-|.++++- |.+.+++++.+....-|.. .|.-- ...|-++... -...|.--||.
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~-l~~iya~~TG~~~e~I~~d~~r 193 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRT-MLEILSRNTGQTVEKLSKDTDR 193 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHhcC
Confidence 47788888888888885 8999999999877654432 11100 0112222111 12233334664
Q ss_pred --CCCcHHHHHHcCCcceecCCC
Q 024353 65 --RISTPSDALFAGLGTDYVPSG 85 (268)
Q Consensus 65 --~l~~a~da~~~GLa~~~v~~~ 85 (268)
.++ |+||+++||++.++.+.
T Consensus 194 d~wms-A~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 194 MFYLT-PQEAKEYGLIDRVLESR 215 (222)
T ss_pred CCcCC-HHHHHHcCCCcEEeccC
Confidence 689 99999999999999753
No 124
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=85.37 E-value=0.72 Score=42.79 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.6
Q ss_pred Cch--hehHHHHHHhhCCEEEEeCCceEeC
Q 024353 2 DGV--TMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 2 nG~--~~GgG~~La~~~d~riate~a~f~~ 29 (268)
-|. |+||+..++..||++|+++++++++
T Consensus 153 ~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 153 GGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred cCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 477 9999999999999999999886655
No 125
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=79.48 E-value=3.7 Score=38.03 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=46.0
Q ss_pred CCchhehHHHHH-HhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 1 MDGVTMGFGIGI-SGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 1 vnG~~~GgG~~L-a~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
+.|+|.||+... ++.||++|+.+++.+ ||. |- ..+-...|+ -++ +.+-+++-+++.|+++
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~I-------gfA---GP-rVIe~t~ge-------~lp-e~fq~ae~l~~~G~vD 274 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYI-------AFA---GK-RVIEQTLNK-------TVP-EGSQAAEYLFDKGLFD 274 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEE-------Eee---CH-HHHHHhcCC-------cCC-cccccHHHHHhCcCce
Confidence 358899998666 556999999887754 442 11 011111111 011 2233377789999999
Q ss_pred eecCCCcchhHHHHH
Q 024353 80 DYVPSGNLGSLKEAL 94 (268)
Q Consensus 80 ~~v~~~~l~~~~~~l 94 (268)
.+|+..++.....+|
T Consensus 275 ~iV~r~~lr~~l~~l 289 (296)
T CHL00174 275 LIVPRNLLKGVLSEL 289 (296)
T ss_pred EEEcHHHHHHHHHHH
Confidence 999988776654444
No 126
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=78.07 E-value=5.9 Score=34.65 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=45.3
Q ss_pred chhehHHHHHHhhCCEE--EEeCCceEeCccccccccCCccHH----------------HHHhcCCCchHHHHHHhhc--
Q 024353 3 GVTMGFGIGISGHGRYR--IVTEKTLLAMPENGIGLFPDVGFS----------------YIAAKGPGGGSVGAYLGMT-- 62 (268)
Q Consensus 3 G~~~GgG~~La~~~d~r--iate~a~f~~pe~~iGl~Pd~G~s----------------~~L~rl~g~~~~g~~L~LT-- 62 (268)
|.+..-|.-|+++++-. ++.++|++.+.-.. |.+-....= -.++.-.|. .+..--.+|
T Consensus 94 G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq-~~e~i~~d~dr 171 (200)
T COG0740 94 GQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ-TLEKIEKDTDR 171 (200)
T ss_pred cHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHhhcc
Confidence 44445566777777764 77777777665544 332111100 001111122 233322333
Q ss_pred CCCCCcHHHHHHcCCcceecCCCc
Q 024353 63 GKRISTPSDALFAGLGTDYVPSGN 86 (268)
Q Consensus 63 G~~l~~a~da~~~GLa~~~v~~~~ 86 (268)
...++ |+||+++||+++++....
T Consensus 172 d~~ms-a~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 172 DTWMS-AEEAKEYGLIDKVIESRE 194 (200)
T ss_pred cccCC-HHHHHHcCCcceeccccc
Confidence 34789 999999999999998654
No 127
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=75.90 E-value=1.9 Score=37.91 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=24.0
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
+| +.+||.-|+++||.+++.+.+.+++
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~ 112 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVEL 112 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEe
Confidence 55 7789999999999999999998875
No 128
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=75.14 E-value=3.7 Score=37.81 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=45.3
Q ss_pred CchhehHHHH-HHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 2 DGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 2 nG~~~GgG~~-La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
-|+|.||+.. .++.+|++|+.+++.+++.-.+ .+-+ .++..+ . +.+.++.=+.+.|.++.
T Consensus 201 ~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~-----ti~e~l--p-e~~q~ae~~~~~G~vD~ 261 (285)
T TIGR00515 201 TDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQ-----TVREKL--P-EGFQTSEFLLEHGAIDM 261 (285)
T ss_pred eCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHH-----HhcCcc--c-hhcCCHHHHHhCCCCcE
Confidence 5889998644 5679999999999866552221 1111 111111 1 22322666888999999
Q ss_pred ecCCCcchhHHHH
Q 024353 81 YVPSGNLGSLKEA 93 (268)
Q Consensus 81 ~v~~~~l~~~~~~ 93 (268)
+|++.++.....+
T Consensus 262 iv~~~~~r~~l~~ 274 (285)
T TIGR00515 262 IVHRPEMKKTLAS 274 (285)
T ss_pred EECcHHHHHHHHH
Confidence 9999887654433
No 129
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=74.80 E-value=3.4 Score=38.21 Aligned_cols=72 Identities=17% Similarity=0.072 Sum_probs=44.3
Q ss_pred CchhehHHHH-HHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 2 DGVTMGFGIG-ISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 2 nG~~~GgG~~-La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
-|+|.||++. .++.+|++|+.+++.+++.-.+ .+-. .++..+ . +.+.++.-+.+.|+++.
T Consensus 202 ~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~-----~~~e~l--p-e~~~~ae~~~~~G~vD~ 262 (292)
T PRK05654 202 TDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQ-----TVREKL--P-EGFQRAEFLLEHGAIDM 262 (292)
T ss_pred eCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHh-----hhhhhh--h-hhhcCHHHHHhCCCCcE
Confidence 5889998654 5677999999998865442111 1111 111111 1 12322677788999999
Q ss_pred ecCCCcchhHHH
Q 024353 81 YVPSGNLGSLKE 92 (268)
Q Consensus 81 ~v~~~~l~~~~~ 92 (268)
+|++.++.....
T Consensus 263 Vv~~~e~r~~l~ 274 (292)
T PRK05654 263 IVHRRELRDTLA 274 (292)
T ss_pred EECHHHHHHHHH
Confidence 999988765443
No 130
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=73.68 E-value=2.7 Score=41.83 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=22.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKT 25 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a 25 (268)
+.|.|.||+......|||+|+++++
T Consensus 161 v~G~~~GG~a~~~al~D~vim~~~~ 185 (512)
T TIGR01117 161 IMGPCAGGAVYSPALTDFIYMVDNT 185 (512)
T ss_pred EecCCCcHHHHHHHhcCceEEeccc
Confidence 3589999998888899999999975
No 131
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=73.02 E-value=12 Score=33.59 Aligned_cols=75 Identities=4% Similarity=-0.050 Sum_probs=41.1
Q ss_pred chhehHH-HHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCc-hHHHHHHhhcCCCCCcHHHHHHcCCcce
Q 024353 3 GVTMGFG-IGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGG-GSVGAYLGMTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 3 G~~~GgG-~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~-~~~g~~L~LTG~~l~~a~da~~~GLa~~ 80 (268)
|-+.||| +++.+.+|.++|-|++ .++..+.-|++..+-|-... ...+..+-.+. .+ ...+.++|+++.
T Consensus 116 g~a~ggg~lamg~~ad~v~Alp~A-------~i~vm~~e~aa~I~~~~~~~~~e~a~~~~~~a--~~-~~~~~~~G~vd~ 185 (238)
T TIGR03134 116 GKAISGAFLAHGLQADRIIALPGA-------MVHVMDLESMARVTKRSVEELEALAKSSPVFA--PG-IENFVKLGGVHA 185 (238)
T ss_pred CCccHHHHHHHccCcCeEEEcCCc-------EEEecCHHHHHHHHccCHhHHHHHHHhhhhhc--cC-HHHHHhCCCccE
Confidence 4555554 4444446766666555 45555544554444332210 02333333222 34 568999999999
Q ss_pred ecCCCcc
Q 024353 81 YVPSGNL 87 (268)
Q Consensus 81 ~v~~~~l 87 (268)
++++.+-
T Consensus 186 vi~~~~~ 192 (238)
T TIGR03134 186 LLDVADA 192 (238)
T ss_pred EeCCCCc
Confidence 9997653
No 132
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=72.51 E-value=4.1 Score=37.35 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCccccccccCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLFPDV 40 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~Pd~ 40 (268)
|+..|+-+|.-|+++||-.+.++++.++--+.++|-+|..
T Consensus 125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 4678999999999999999999999999999999887754
No 133
>PRK11778 putative inner membrane peptidase; Provisional
Probab=66.92 E-value=7 Score=36.78 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=24.6
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
|++.+.=||.-|+++||-++|.+.+..+.
T Consensus 161 v~~~AASggY~iAsaAD~I~A~P~a~vGS 189 (330)
T PRK11778 161 VDKVAASGGYMMACVADKIIAAPFAIVGS 189 (330)
T ss_pred ECCchhhHHHHHHHhCCEEEECCCCeEEe
Confidence 35667778999999999999999998764
No 134
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=60.03 E-value=6 Score=39.09 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCchhehHHHHHHhhCCEEEEeCC-ceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHH-------
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEK-TLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDA------- 72 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~-a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da------- 72 (268)
+.|+|.|||+-++..||++|++++ +.+ |+. | + .+ -=..||+.++ ..++
T Consensus 138 v~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~---G----------P-~v--v~~~~Ge~~~-~~~lgG~~~h~ 193 (493)
T PF01039_consen 138 VTGPCTGGGAYLAALSDFVIMVKGTARI-------FLA---G----------P-RV--VESATGEEVD-SEELGGADVHA 193 (493)
T ss_dssp EESEEEGGGGHHHHHSSEEEEETTTCEE-------ESS---T----------H-HH--HHHHHSSCTS-HHHHHBHHHHH
T ss_pred EccccccchhhcccccCccccCccceEE-------Eec---c----------c-cc--cccccCcccc-chhhhhhhhhc
Confidence 469999999999999999999998 644 441 1 1 01 1134567777 5543
Q ss_pred HHcCCcceecCCCc
Q 024353 73 LFAGLGTDYVPSGN 86 (268)
Q Consensus 73 ~~~GLa~~~v~~~~ 86 (268)
...|.++++++++.
T Consensus 194 ~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 194 AKSGVVDYVVDDEE 207 (493)
T ss_dssp HTSSSSSEEESSHH
T ss_pred ccCCCceEEEechH
Confidence 36899999998653
No 135
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=57.43 E-value=6.7 Score=36.51 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCceEeCcccccccc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKTLLAMPENGIGLF 37 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a~f~~pe~~iGl~ 37 (268)
|+++|+=||.-|+++||.++|+++|..+ +||.+
T Consensus 135 v~~~AASGGY~IA~aAd~I~a~p~si~G----SIGVi 167 (317)
T COG0616 135 VGGYAASGGYYIALAADKIVADPSSITG----SIGVI 167 (317)
T ss_pred ECCeecchhhhhhccCCEEEecCCceee----eceeE
Confidence 5788999999999999999999999987 45544
No 136
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=52.42 E-value=10 Score=38.39 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=21.9
Q ss_pred CCchhehHHHHHHhhCCEEEEeCCc
Q 024353 1 MDGVTMGFGIGISGHGRYRIVTEKT 25 (268)
Q Consensus 1 vnG~~~GgG~~La~~~d~riate~a 25 (268)
|-|.|.|||+-+...||++|+++..
T Consensus 212 v~G~~~gGgAy~~a~~D~vim~~~~ 236 (569)
T PLN02820 212 VLGSCTAGGAYVPAMADESVIVKGN 236 (569)
T ss_pred EeCCCChHHHHHHHhCCceEEecCC
Confidence 3588999999999999999999864
No 137
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=51.54 E-value=68 Score=28.51 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=54.0
Q ss_pred cHHHHHHcCCcceecCCCcchhHHHHHHhcc-------C-CCCchhHHHHHHHhhcCCCCCCchhhcchhHHHhhhcCCC
Q 024353 68 TPSDALFAGLGTDYVPSGNLGSLKEALLAVT-------F-SEDPHQDIVALLAKYSSDPEGEAPLKLLLPQITSCFSSEK 139 (268)
Q Consensus 68 ~a~da~~~GLa~~~v~~~~l~~~~~~l~~~~-------~-~~~~~~~~~~~l~~y~~~~~~~~~l~~~~~~I~~~F~~~~ 139 (268)
+-++|++.|.+++++.+=.++.+..+|.+-. . ..-+.+.++.++.-+....++. .|.+ =|+. .
T Consensus 88 tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~~~~sQ~~lD~l~~~~~k~~~~~-~LPk---Gi~~-----~ 158 (224)
T COG4565 88 TIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALESHQQLSQKELDQLFNIQSKEQPPD-DLPK---GLDE-----L 158 (224)
T ss_pred HHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHhccccccCcc-cCCC---CcCH-----H
Confidence 3579999999999999888877777665411 0 1123455666665554321111 1100 0111 1
Q ss_pred CHHHHHHHHHhccccchhhHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 024353 140 SVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQKYF 185 (268)
Q Consensus 140 sl~eI~~~L~~~~~~~~~~~~~~A~~~~~~i~~~sP~al~~tk~~l 185 (268)
|++-|.+.|+... ..+..+-+.+....|..+.+--.+++
T Consensus 159 Tl~~i~~~~~~~~-------~~~Taeela~~~giSRvTaRRYLeyl 197 (224)
T COG4565 159 TLQKVREALKEPD-------QELTAEELAQALGISRVTARRYLEYL 197 (224)
T ss_pred HHHHHHHHHhCcC-------CccCHHHHHHHhCccHHHHHHHHHHH
Confidence 7777777777322 11222222344455666655544444
No 138
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.31 E-value=20 Score=32.58 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=39.1
Q ss_pred EeCCceEeCcccccccc-CCccHHH----------HHhcCCCchHHHHHHhhcCC-------------CCCcHHHHHHcC
Q 024353 21 VTEKTLLAMPENGIGLF-PDVGFSY----------IAAKGPGGGSVGAYLGMTGK-------------RISTPSDALFAG 76 (268)
Q Consensus 21 ate~a~f~~pe~~iGl~-Pd~G~s~----------~L~rl~g~~~~g~~L~LTG~-------------~l~~a~da~~~G 76 (268)
.++.-+|+||.+++=+. |-+|+.- -+.++.-. -...|---||. .++ +.||.++|
T Consensus 172 G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~-l~~i~a~~Tgq~~e~i~~d~dRd~fms-a~EA~eyG 249 (275)
T KOG0840|consen 172 GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEY-LNEIYAKHTGQPLEVIEKDMDRDRFMS-AEEAKEYG 249 (275)
T ss_pred CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHhhhcccccCC-HHHHHHhc
Confidence 45667999999998777 4333210 01111111 23344556776 578 99999999
Q ss_pred CcceecCC
Q 024353 77 LGTDYVPS 84 (268)
Q Consensus 77 La~~~v~~ 84 (268)
|++.++.+
T Consensus 250 liD~v~~~ 257 (275)
T KOG0840|consen 250 LIDKVIDH 257 (275)
T ss_pred chhhhhcC
Confidence 99999874
No 139
>PRK10949 protease 4; Provisional
Probab=45.59 E-value=48 Score=33.94 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.2
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEeC
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLAM 29 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~~ 29 (268)
.|.+.-||.-++++||.++|.+.+..+.
T Consensus 404 ~~~aASggY~iA~aad~I~a~p~t~tGS 431 (618)
T PRK10949 404 GGMAASGGYWISTPANYIVASPSTLTGS 431 (618)
T ss_pred CCCCccHHHHHHHhcCEEEECCCCceee
Confidence 4566668999999999999999886553
No 140
>smart00250 PLEC Plectin repeat.
Probab=39.81 E-value=25 Score=21.95 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.7
Q ss_pred hcCCCCCcHHHHHHcCCcce
Q 024353 61 MTGKRISTPSDALFAGLGTD 80 (268)
Q Consensus 61 LTG~~l~~a~da~~~GLa~~ 80 (268)
-||++++ -.+|++-||++.
T Consensus 17 ~t~~~ls-v~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLS-VEEALRRGLIDP 35 (38)
T ss_pred CCCCCcC-HHHHHHcCCCCc
Confidence 3899999 999999999864
No 141
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.90 E-value=55 Score=31.83 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=38.3
Q ss_pred hCCEEEEeCCceEeCccccccccCCccHHHHHhcCCCchHHHHHHhhcCCCCCcHHHHHHc
Q 024353 15 HGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAAKGPGGGSVGAYLGMTGKRISTPSDALFA 75 (268)
Q Consensus 15 ~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~rl~g~~~~g~~L~LTG~~l~~a~da~~~ 75 (268)
.-.+|||||+. +-+-+.+|++-|.|+-+-=.+-.|-...=..|++-|-.=+ ++.++++
T Consensus 40 ~NGlrVaTE~~--~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~R-s~~alEl 97 (467)
T KOG0960|consen 40 PNGLRVATEHN--SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNR-SQAALEL 97 (467)
T ss_pred CCCcEEEeccC--CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcc-hhHHHHH
Confidence 34689999999 8888999999999874433333332223334566666666 5666653
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=31.71 E-value=67 Score=29.61 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=43.0
Q ss_pred CchhehH-HHHHHhhCCEEEEeCCceEeCccccccccCCccHHHHHh-cCCCchHHHHHHhhcCCCCCcHHHHHHcCCcc
Q 024353 2 DGVTMGF-GIGISGHGRYRIVTEKTLLAMPENGIGLFPDVGFSYIAA-KGPGGGSVGAYLGMTGKRISTPSDALFAGLGT 79 (268)
Q Consensus 2 nG~~~Gg-G~~La~~~d~riate~a~f~~pe~~iGl~Pd~G~s~~L~-rl~g~~~~g~~L~LTG~~l~~a~da~~~GLa~ 79 (268)
..+++|| -+.+++..|+.||-++|.+++.-.++ .-..+. .||- -+.+++-+++.|+++
T Consensus 203 t~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPe-------------gfQ~aEfLlehG~iD 262 (294)
T COG0777 203 TDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPE-------------GFQTAEFLLEHGMID 262 (294)
T ss_pred cCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCc-------------chhhHHHHHHcCCce
Confidence 3577887 58899999999999888654322221 000010 1221 122278899999999
Q ss_pred eecCCCcchh
Q 024353 80 DYVPSGNLGS 89 (268)
Q Consensus 80 ~~v~~~~l~~ 89 (268)
.+|+..++..
T Consensus 263 ~iv~R~elr~ 272 (294)
T COG0777 263 MIVHRDELRT 272 (294)
T ss_pred eeecHHHHHH
Confidence 9999866544
No 143
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=27.17 E-value=51 Score=26.98 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=21.2
Q ss_pred CchhehHHHHHHhhCCEEEEeCCceEe
Q 024353 2 DGVTMGFGIGISGHGRYRIVTEKTLLA 28 (268)
Q Consensus 2 nG~~~GgG~~La~~~d~riate~a~f~ 28 (268)
+|.+.-||.-|+++||-+++++.+.++
T Consensus 14 ~~~~~S~~Y~lAs~ad~I~~~p~s~vg 40 (154)
T PF01343_consen 14 EGYAASGAYYLASAADEIYANPSSSVG 40 (154)
T ss_dssp EEEEETHHHHHHTTSSEEEE-TT-EEE
T ss_pred CCcchhHHHHHHHcCCEEEecCCCEEE
Confidence 466777899999999999999988765
No 144
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=25.71 E-value=27 Score=22.69 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.9
Q ss_pred cCCCCCcHHHHHHcCCcc
Q 024353 62 TGKRISTPSDALFAGLGT 79 (268)
Q Consensus 62 TG~~l~~a~da~~~GLa~ 79 (268)
||++++ -.+|+..||++
T Consensus 18 tg~~ls-v~~A~~~glId 34 (45)
T PF00681_consen 18 TGERLS-VEEAIQRGLID 34 (45)
T ss_dssp TTEEEE-HHHHHHTTSS-
T ss_pred CCeEEc-HHHHHHCCCcC
Confidence 789999 99999999985
No 145
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=24.66 E-value=1.6e+02 Score=21.72 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=33.8
Q ss_pred HHhhhcCC---CCHHHHHHHHHhccccchhhHHHHHHHHHHHHhccCHHHHHHHH
Q 024353 131 ITSCFSSE---KSVRQIIEELKKHQSSAETSVAQWADEALQGMGKGAPFSLCLTQ 182 (268)
Q Consensus 131 I~~~F~~~---~sl~eI~~~L~~~~~~~~~~~~~~A~~~~~~i~~~sP~al~~tk 182 (268)
+.+.|+.. .-+.+|++.|...-...+ ..++.++++.+.+.+.+.+.+.+
T Consensus 36 l~~if~~~l~~~~L~~il~~l~~~~~~~~---~~~i~~~L~~L~~~~RF~l~~~f 87 (94)
T PF13877_consen 36 LPKIFKNSLEPEFLSEILEALNEHFIPED---PEFIFEILEALSKVKRFDLAVMF 87 (94)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHccCC---HHHHHHHHHHhcCCCCHHHHHHh
Confidence 45555443 367788888876432222 45788889999999999988755
No 146
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=24.34 E-value=1.5e+02 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.6
Q ss_pred CCCcHHHHHHcCCcceecCCCcchhH
Q 024353 65 RISTPSDALFAGLGTDYVPSGNLGSL 90 (268)
Q Consensus 65 ~l~~a~da~~~GLa~~~v~~~~l~~~ 90 (268)
..+ +..+...|+++.+|++.+.-..
T Consensus 463 ~~~-~~~~a~~g~vD~VI~P~~tR~~ 487 (512)
T TIGR01117 463 FAN-PYKAAARGYVDDVIEPKQTRPK 487 (512)
T ss_pred hcC-HHHHHhcCCCCeeEChHHHHHH
Confidence 446 8899999999999999876553
No 147
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=23.16 E-value=2.5e+02 Score=18.96 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=32.8
Q ss_pred HHHhccCHHHHHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 024353 168 QGMGKGAPFSLCLTQKYFSKVASAHGKTDNELSKLSGVMKYEYRVALRSSLRSDFAEGVRA 228 (268)
Q Consensus 168 ~~i~~~sP~al~~tk~~l~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~D~~eGv~a 228 (268)
+-+..+||.-++.++..+.+.. ..++.+.++.| .+.||++.+.+
T Consensus 22 ~Il~~rs~~ql~~i~~~Y~~~~---------g~~L~~~i~~e--------~sGd~~~~Ll~ 65 (66)
T PF00191_consen 22 EILCTRSPAQLRAIKQAYKKKY---------GKDLEEDIKKE--------TSGDFEKLLLA 65 (66)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHH---------SS-HHHHHHHH--------STHHHHHHHHH
T ss_pred hHHhhhcccccceeehhhhhhh---------HHHHHHHHHHh--------CCHHHHHHHHh
Confidence 6788899999999999998876 57788877665 45566665543
No 148
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=21.38 E-value=33 Score=28.10 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.0
Q ss_pred hhcCCCCCcHHHHHHcCCcceecCCCc
Q 024353 60 GMTGKRISTPSDALFAGLGTDYVPSGN 86 (268)
Q Consensus 60 ~LTG~~l~~a~da~~~GLa~~~v~~~~ 86 (268)
.+.|..+. |++|++.||++.+-..++
T Consensus 117 ~~~~~~~~-~~~A~~~GLiD~i~~~~~ 142 (154)
T PF01343_consen 117 IADGGVFT-AQQALELGLIDEIGTFDE 142 (154)
T ss_dssp HHCCHEEE-HHHHHHTTSSSEETSHHH
T ss_pred HHhhcccc-HHHHHHcCchhhcCCHHH
Confidence 46888999 999999999999976444
Done!