Query 024356
Match_columns 268
No_of_seqs 220 out of 1269
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 7.5E-84 1.6E-88 607.3 22.7 267 1-268 1-282 (347)
2 PLN03019 carbonic anhydrase 100.0 7.7E-58 1.7E-62 428.9 19.3 206 63-268 70-277 (330)
3 PLN00416 carbonate dehydratase 100.0 5.3E-51 1.1E-55 373.3 18.9 201 66-267 1-202 (258)
4 PLN03006 carbonate dehydratase 100.0 1.8E-48 4E-53 362.5 15.9 183 84-268 49-233 (301)
5 KOG1578 Predicted carbonic anh 100.0 1.6E-42 3.6E-47 317.2 7.3 214 43-268 2-215 (276)
6 PLN02154 carbonic anhydrase 100.0 2.8E-40 6E-45 306.3 16.1 159 109-268 70-228 (290)
7 cd00884 beta_CA_cladeB Carboni 100.0 3.1E-40 6.6E-45 290.0 13.0 145 121-266 1-146 (190)
8 PRK10437 carbonic anhydrase; P 100.0 7.9E-40 1.7E-44 293.7 14.7 144 114-266 3-146 (220)
9 PRK15219 carbonic anhydrase; P 100.0 1.8E-39 3.8E-44 295.4 15.0 131 108-251 50-183 (245)
10 cd00883 beta_CA_cladeA Carboni 100.0 2E-39 4.3E-44 282.3 12.8 122 122-252 1-122 (182)
11 COG0288 CynT Carbonic anhydras 100.0 4.7E-39 1E-43 286.2 12.3 135 113-254 2-137 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 3.2E-34 6.8E-39 245.2 11.4 105 111-222 1-108 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 2.3E-30 5E-35 216.5 9.7 97 148-252 1-97 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 5.7E-29 1.2E-33 203.5 8.2 76 144-223 1-76 (119)
15 cd03379 beta_CA_cladeD Carboni 99.9 3.3E-27 7.3E-32 198.0 6.2 74 144-224 1-74 (142)
16 KOG1578 Predicted carbonic anh 98.3 1.9E-08 4.1E-13 93.4 -4.6 124 118-246 3-154 (276)
17 PF00561 Abhydrolase_1: alpha/ 55.6 12 0.00027 30.8 3.0 31 190-221 28-58 (230)
18 PF12778 PXPV: PXPV repeat (3 53.8 6.8 0.00015 23.8 0.9 18 41-58 4-21 (22)
19 PF04019 DUF359: Protein of un 41.5 1.6E+02 0.0035 24.5 7.5 80 140-227 6-85 (121)
20 PF07859 Abhydrolase_3: alpha/ 34.0 36 0.00078 28.6 2.6 33 191-223 51-88 (211)
21 PRK11440 putative hydrolase; P 33.9 83 0.0018 26.9 4.9 47 164-220 90-136 (188)
22 PRK14066 exodeoxyribonuclease 32.1 92 0.002 23.9 4.3 25 66-90 1-27 (75)
23 PF00009 GTP_EFTU: Elongation 31.8 26 0.00056 29.7 1.4 17 205-221 3-19 (188)
24 TIGR01250 pro_imino_pep_2 prol 28.9 68 0.0015 27.0 3.5 31 193-223 83-113 (288)
25 TIGR02742 TrbC_Ftype type-F co 28.6 1.2E+02 0.0025 25.7 4.7 56 130-204 57-112 (130)
26 TIGR03413 GSH_gloB hydroxyacyl 27.8 79 0.0017 28.6 3.9 23 191-214 143-165 (248)
27 cd01891 TypA_BipA TypA (tyrosi 27.7 36 0.00079 28.8 1.6 16 205-220 2-17 (194)
28 PF00857 Isochorismatase: Isoc 26.0 2E+02 0.0044 23.6 5.8 45 168-222 85-129 (174)
29 PF12697 Abhydrolase_6: Alpha/ 25.7 78 0.0017 25.2 3.1 30 193-222 53-82 (228)
30 PRK03592 haloalkane dehalogena 25.4 72 0.0016 28.4 3.2 30 194-223 81-110 (295)
31 PRK10803 tol-pal system protei 24.9 86 0.0019 29.1 3.6 50 50-105 23-72 (263)
32 TIGR03100 hydr1_PEP hydrolase, 24.7 83 0.0018 28.4 3.4 31 191-222 84-115 (274)
33 cd01890 LepA LepA subfamily. 24.0 40 0.00087 27.5 1.1 15 206-220 1-15 (179)
34 PF01368 DHH: DHH family; Int 24.0 63 0.0014 25.7 2.3 20 204-223 4-25 (145)
35 COG1116 TauB ABC-type nitrate/ 23.6 46 0.00099 31.2 1.5 17 205-221 29-45 (248)
36 PF01764 Lipase_3: Lipase (cla 23.4 1E+02 0.0022 24.3 3.3 32 192-223 50-81 (140)
37 PLN02824 hydrolase, alpha/beta 23.2 86 0.0019 27.9 3.2 29 194-222 90-118 (294)
38 cd04160 Arfrp1 Arfrp1 subfamil 22.5 43 0.00094 26.9 1.1 15 207-221 1-15 (167)
39 KOG0025 Zn2+-binding dehydroge 21.7 1.1E+02 0.0024 30.0 3.7 41 161-213 153-194 (354)
40 cd01015 CSHase N-carbamoylsarc 21.3 2E+02 0.0043 24.4 4.9 49 165-223 84-133 (179)
41 PRK10566 esterase; Provisional 21.3 1.1E+02 0.0024 26.3 3.4 27 194-220 93-121 (249)
42 PRK14068 exodeoxyribonuclease 21.0 1.9E+02 0.0042 22.3 4.3 22 68-89 5-28 (76)
43 PRK14064 exodeoxyribonuclease 20.6 2E+02 0.0043 22.0 4.3 21 69-89 6-28 (75)
44 cd01878 HflX HflX subfamily. 20.2 64 0.0014 27.3 1.7 18 204-221 40-57 (204)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=7.5e-84 Score=607.25 Aligned_cols=267 Identities=76% Similarity=1.166 Sum_probs=247.0
Q ss_pred CCcccccceeccccccccccccccCCCCc-eeEEeccC------------CCCCCCcccCCccccCCCCccccchhhhhh
Q 024356 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLNS------------PASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (268)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (268)
|||++|||||+||++++++++++ .++|| ++||+|++ +++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 89999961 133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 024356 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (268)
Q Consensus 68 ~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~--~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (268)
++||||||++|+|||++|++|..+|++||+++|+||++. ....+++++++|++||++|+++.+..++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 999999999999999999999999999999999999862 235689999999999999999999999999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhc
Q 024356 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (268)
Q Consensus 146 P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~ 225 (268)
|+++||+|+||||+|+.|||++|||+||+||+||+|+++|...|+++.++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999886666788999999999999999999999999999999986
Q ss_pred ccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhhhC
Q 024356 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (268)
Q Consensus 226 ~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ek 268 (268)
.+++....++|++||+.+.|++++++.++++.+++++|+.|||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ek 282 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCER 282 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 5555556789999999999999999888888889999988874
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=7.7e-58 Score=428.95 Aligned_cols=206 Identities=78% Similarity=1.238 Sum_probs=189.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHhhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhh
Q 024356 63 REDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSEL 140 (268)
Q Consensus 63 ~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~--~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~L 140 (268)
.++|+++|||+||++|+|||++|++|..+|++||+++|+||++. ...++++++++|++||++|+.+.+..++++|++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 70 LRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 35699999999999999999999999999999999999999862 3466899999999999999999998999999999
Q ss_pred hcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHH
Q 024356 141 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (268)
Q Consensus 141 a~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~ 220 (268)
++||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...|+++.++|||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999999999998876677899999999999999999999999999999
Q ss_pred HhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhhhC
Q 024356 221 GLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (268)
Q Consensus 221 Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ek 268 (268)
|+++..+++....++|++||+.+.|++.+++...+..+++++|+.||+
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~ 277 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER 277 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 999865555556789999999999999998877777788888888874
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.3e-51 Score=373.28 Aligned_cols=201 Identities=62% Similarity=1.035 Sum_probs=180.0
Q ss_pred hhhhhHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 024356 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (268)
Q Consensus 66 ~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~~~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (268)
|+.+||+.+|.+|.+||+.+..+..++++++.-++++|+... .+|.+++++|++||++|+.+++..++++|+.|+.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 788999999999999999999999999999999999998853 6799999999999999999998888999999999999
Q ss_pred CcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhc
Q 024356 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (268)
Q Consensus 146 P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~ 225 (268)
|+++||+||||||+|+.|||++|||+||+||+||+|+++|...++++.++||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876545678899999999999999999999999999999874
Q ss_pred ccCC-CCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhhh
Q 024356 226 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 267 (268)
Q Consensus 226 ~~~~-~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~e 267 (268)
.+.. ....++|..|+..+.|+++++..+.+..++.+++..||
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e 202 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCE 202 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 3221 22346899999999999988776666667777766665
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.8e-48 Score=362.49 Aligned_cols=183 Identities=43% Similarity=0.771 Sum_probs=164.2
Q ss_pred hcCCchhHHHHhHHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcc
Q 024356 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (268)
Q Consensus 84 ~~~~l~~~a~~~i~~~t~el~~~~--~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe 161 (268)
+..+|..+|++|++++|+||++.+ ...+.+++++|++||.+|+..++..++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999998643 345889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHH
Q 024356 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (268)
Q Consensus 162 ~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~ 241 (268)
.|||++|||+|||||+||+|++++... .++.++|||||.+|+|++|||||||+||||+|+++..+.+ ...++|+.|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987532 5688999999999999999999999999999999865554 35679999999
Q ss_pred hhhhhHHHhhhhcCCCChHHHhhhhhC
Q 024356 242 IGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (268)
Q Consensus 242 ~~~pA~~~v~~~~~~~~~~~~~~~~ek 268 (268)
.+.+++.++.+...+..++++|+.|||
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ek 233 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEK 233 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHH
Confidence 999999988776666678888888874
No 5
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-42 Score=317.15 Aligned_cols=214 Identities=44% Similarity=0.681 Sum_probs=203.6
Q ss_pred CcccCCccccCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 024356 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (268)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~~~~~~~~~~le~Ll~GN 122 (268)
.|+|+.+.|..+.+.....+.++|.+.+|+.+++...++|..+-++ ++++++.+++++ .+.++++++||
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999999999999999999999999999999998 899999999983 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHh
Q 024356 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (268)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~ 202 (268)
..|..+++.++|.+|..++++|+|+.++|+|+||||+|++|++++|||.|++||++|+|+|.|++.+.++.|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred cCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhhhC
Q 024356 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (268)
Q Consensus 203 L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ek 268 (268)
|+|++|+||||++||||+++|....++. ..+|+.+|+.+..+++..++++..+..+++||..||+
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~ 215 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCES 215 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHH
Confidence 9999999999999999999999877766 6789999999999999999999999999999999985
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.8e-40 Score=306.34 Aligned_cols=159 Identities=44% Similarity=0.778 Sum_probs=138.0
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcc
Q 024356 109 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK 188 (268)
Q Consensus 109 ~~~~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~ 188 (268)
.+..+.+++|++||++|+.+++..++++|++|+.||+|+++||+|+||||+|+.|||++|||+||+||+||+|++++. +
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~-g 148 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQN-G 148 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccC-C
Confidence 455678999999999999999999999999999999999999999999999999999999999999999999999764 3
Q ss_pred cchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhhhC
Q 024356 189 YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 268 (268)
Q Consensus 189 ~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ek 268 (268)
+.++.++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.+.....++.+++++++.||+
T Consensus 149 ~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~ 228 (290)
T PLN02154 149 PTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228 (290)
T ss_pred ccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999753322344579999999988887766544555677777777763
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.1e-40 Score=290.03 Aligned_cols=145 Identities=49% Similarity=0.805 Sum_probs=125.1
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCc-ccchhHHHHHHH
Q 024356 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (268)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~-~~~~v~asLEyA 199 (268)
||++|++..+..++++|++|+.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.+ .++++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987542 345788999999
Q ss_pred HHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhh
Q 024356 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYC 266 (268)
Q Consensus 200 V~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ 266 (268)
+.+|+|++|||||||+||||+|++.... +....++|+.||..+.|++.++..+.+..+..++.+++
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~ 146 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRAL 146 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 9999999999999999999999997533 23345689999999999999887765544555554443
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=7.9e-40 Score=293.69 Aligned_cols=144 Identities=28% Similarity=0.486 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhH
Q 024356 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (268)
Q Consensus 114 ~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~ 193 (268)
.+++|++||++|++..+..++++|+.+..+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5889999999999998888999999999999999999999999999999999999999999999999998653 478
Q ss_pred HHHHHHHHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhcCCCChHHHhhhh
Q 024356 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYC 266 (268)
Q Consensus 194 asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~~~~~~~~~~~~~ 266 (268)
++|||||.+|+|++|||||||+||||+|+++.. ..++|+.|+..+.|++++.....++.+.+++++.+
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l 146 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTL 146 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 899999999999999999999999999999632 24789999999999998766555555555555443
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.8e-39 Score=295.43 Aligned_cols=131 Identities=25% Similarity=0.361 Sum_probs=115.9
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCC
Q 024356 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (268)
Q Consensus 108 ~~~~~~~le~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~ 184 (268)
..+|.+++++|++||++|+++.+. .++++ .++++||+|+++||+|+||||+|+.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 478999999999999999998764 34333 2467899999999999999999999999999999999999999975
Q ss_pred CCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhh
Q 024356 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVL 251 (268)
Q Consensus 185 d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~ 251 (268)
++.++||||+.+|+|++|||||||+||||+|+++.. ..++|..||+.++|++.+++
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~ 183 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTE 183 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHh
Confidence 267899999999999999999999999999999642 34689999999999998764
No 10
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2e-39 Score=282.33 Aligned_cols=122 Identities=37% Similarity=0.640 Sum_probs=111.6
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHH
Q 024356 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (268)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~ 201 (268)
|++|++.++..++++|++|..+|+|+++|||||||||+|+.|||.+|||+||+||+||+|++++. ++.++|||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998753 57899999999
Q ss_pred hcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhh
Q 024356 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLT 252 (268)
Q Consensus 202 ~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~ 252 (268)
+|||++|||||||+||||+|+++.. ..+++..|+..+.++++....
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~ 122 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAA 122 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998642 346899999999998876543
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=286.18 Aligned_cols=135 Identities=36% Similarity=0.580 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccch
Q 024356 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (268)
Q Consensus 113 ~~le~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~ 191 (268)
..+++|++||++|.++.+..++.+|+.|. .+|+|+++||+||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999998888899998876 56999999999999999999999999999999999999999875 36
Q ss_pred hHHHHHHHHHhcCccEEEEeccCCchHHHHhhhcccCCCCCCccHHHHHHhhhhhHHHhhhhc
Q 024356 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH 254 (268)
Q Consensus 192 v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~~~~~~~~~I~~Wl~~~~pA~~~v~~~~ 254 (268)
++++||||+.+|||++|||||||+||||+|+++....+.+ +|..|+..+.+....+....
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~ 137 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLL 137 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcch
Confidence 8999999999999999999999999999999975544332 69999988888776655443
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.2e-34 Score=245.16 Aligned_cols=105 Identities=42% Similarity=0.603 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCc
Q 024356 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (268)
Q Consensus 111 ~~~~le~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~ 187 (268)
|..++++|++||++|.+++... +++.|.++.++|+|+++||||||||++|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 4678999999999999875421 255688899999999999999999999999999999999999999999986
Q ss_pred ccchhHHHHHHHHHhcCccEEEEeccCCchHHHHh
Q 024356 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (268)
Q Consensus 188 ~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa 222 (268)
++.++||||+.+|||++|||||||+||+++++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 36789999999999999999999999999997
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.96 E-value=2.3e-30 Score=216.46 Aligned_cols=97 Identities=41% Similarity=0.753 Sum_probs=80.5
Q ss_pred EEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhhhccc
Q 024356 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (268)
Q Consensus 148 alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~ 227 (268)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++.++||||+.+||+++|||||||+||++++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998864 46889999999999999999999999999999886322
Q ss_pred CCCCCCccHHHHHHhhhhhHHHhhh
Q 024356 228 DGNNSTDFIEDWVKIGIPAKSKVLT 252 (268)
Q Consensus 228 ~~~~~~~~I~~Wl~~~~pA~~~v~~ 252 (268)
..+++++|++.+.|+......
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~ 97 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVD 97 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHH
T ss_pred ----ccchHHHHHHhhhhhHHHHHH
Confidence 456899999999999888433
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.95 E-value=5.7e-29 Score=203.52 Aligned_cols=76 Identities=51% Similarity=0.921 Sum_probs=71.5
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhh
Q 024356 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~ 223 (268)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .++.++||||+..||+++|+|||||+||++++..
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a~~ 76 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKALV 76 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHHHH
Confidence 799999999999999999999999999999999999999864 4688999999999999999999999999999843
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.94 E-value=3.3e-27 Score=198.00 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=69.3
Q ss_pred CCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHhh
Q 024356 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 144 Q~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~ 223 (268)
+.++++|||||||||+|+.+||++|||+||+||+||+|++ +++++|+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3578999999999999999999999999999999999986 367899999999999999999999999999986
Q ss_pred h
Q 024356 224 S 224 (268)
Q Consensus 224 ~ 224 (268)
+
T Consensus 74 ~ 74 (142)
T cd03379 74 E 74 (142)
T ss_pred H
Confidence 4
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.34 E-value=1.9e-08 Score=93.42 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeccCCCCCcccc----------------cCCCCCceEEEeecCCCC
Q 024356 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (268)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~I----------------f~~~pGD~FVvRNaGNiV 181 (268)
|+.|..+|+..... ++-+++.+-++|.+..++|+|+|.-|... +..+.||.||+||.||..
T Consensus 3 i~~~~~~~~~t~~~---~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRK---DLVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHH---HhHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 66778888876543 22356778889999999999999999876 667899999999999999
Q ss_pred CCCCCcccchh-------HHHHHHHHHhcCccEEEEeccCCchHHHHhhhccc--CC---CCCCccHHHHHHhhhhh
Q 024356 182 PPYDQTKYAGV-------GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DG---NNSTDFIEDWVKIGIPA 246 (268)
Q Consensus 182 ~~~d~~~~~~v-------~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~~~~~--~~---~~~~~~I~~Wl~~~~pA 246 (268)
+.... |... ..+|+.|+......||+||||++|-+++....... +. ......|+.||...+-.
T Consensus 80 ~~p~~--f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkve 154 (276)
T KOG1578|consen 80 PNPTL--FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVE 154 (276)
T ss_pred CChhh--hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccc
Confidence 86431 1111 13566777777889999999999999998765543 11 12235799999765443
No 17
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=55.57 E-value=12 Score=30.80 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHhcCccEEEEeccCCchHHHH
Q 024356 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (268)
Q Consensus 190 ~~v~asLEyAV~~L~V~~IVV~GHT~CGai~A 221 (268)
..+.+.+++-...|+++.+.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45667899999999999999999998 55443
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=53.79 E-value=6.8 Score=23.77 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=14.1
Q ss_pred CCCcccCCccccCCCCcc
Q 024356 41 PPSLIRNEPVFAAPAPII 58 (268)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (268)
.|..++-+||+.||.|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 577778888888888864
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=41.49 E-value=1.6e+02 Score=24.54 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=64.7
Q ss_pred hhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHH
Q 024356 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (268)
Q Consensus 140 La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai 219 (268)
+..|-.|...|+-.=--|-+...... .....+.++|..+-+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999999888888765544 55678999999999975 35678889987777779999999999999
Q ss_pred HHhhhccc
Q 024356 220 KGLMSFTF 227 (268)
Q Consensus 220 ~Aa~~~~~ 227 (268)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 98776554
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=33.98 E-value=36 Score=28.62 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHh-----cCccEEEEeccCCchHHHHhh
Q 024356 191 GVGAAVEYAVLH-----LKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 191 ~v~asLEyAV~~-----L~V~~IVV~GHT~CGai~Aa~ 223 (268)
.+.+++++...+ ...+.|+|+|||.-|.+...+
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhh
Confidence 467789998888 667899999999988888654
No 21
>PRK11440 putative hydrolase; Provisional
Probab=33.95 E-value=83 Score=26.90 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.4
Q ss_pred cCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHH
Q 024356 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (268)
Q Consensus 164 f~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~ 220 (268)
+...+||.++.++--+-... + .|+.-+...|+++|||+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 35578898777765443322 1 25666778999999999965554444
No 22
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.13 E-value=92 Score=23.94 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHhh--hcCCchh
Q 024356 66 MANQSYEEAIEALKKLLK--EKEDLKP 90 (268)
Q Consensus 66 ~~~~s~~~ai~~~~~~l~--~~~~l~~ 90 (268)
|...+|++|++.|...++ +++++..
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~L 27 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSL 27 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCH
Confidence 566789999998887766 4555543
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.80 E-value=26 Score=29.69 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.2
Q ss_pred ccEEEEeccCCchHHHH
Q 024356 205 VSNIVVIGHSACGGIKG 221 (268)
Q Consensus 205 V~~IVV~GHT~CGai~A 221 (268)
+.+|.|+||.++|=-.-
T Consensus 3 ~~~I~i~G~~~sGKTTL 19 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTL 19 (188)
T ss_dssp EEEEEEEESTTSSHHHH
T ss_pred EEEEEEECCCCCCcEee
Confidence 56899999999996653
No 24
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=28.93 E-value=68 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCccEEEEeccCCchHHHHhh
Q 024356 193 GAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 193 ~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~ 223 (268)
...+...+..++.+.++|+|||--|.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 3445555677888999999999999887544
No 25
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=28.64 E-value=1.2e+02 Score=25.68 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=35.3
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeccCCCCCcccccCCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcC
Q 024356 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (268)
Q Consensus 130 ~~~~p~~~~~La~gQ~P~alVItCsDSRV~Pe~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~ 204 (268)
..-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.++. ||+ +|+||+..+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~v~--Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDVVY--GNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeEEE--ecc--------------cHHHHHHHHH
Confidence 44589999988766777 5788888875555332 3444443333 553 4777776654
No 26
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=27.83 E-value=79 Score=28.57 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhcCccEEEEeccC
Q 024356 191 GVGAAVEYAVLHLKVSNIVVIGHS 214 (268)
Q Consensus 191 ~v~asLEyAV~~L~V~~IVV~GHT 214 (268)
....+|+ .+..|..+.+|++||.
T Consensus 143 ~~~~Sl~-~l~~l~~~~~i~pGH~ 165 (248)
T TIGR03413 143 QMYDSLQ-RLAALPDDTLVYCAHE 165 (248)
T ss_pred HHHHHHH-HHHcCCCCeEEECCCC
Confidence 4556777 5677887888999995
No 27
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=27.74 E-value=36 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.4
Q ss_pred ccEEEEeccCCchHHH
Q 024356 205 VSNIVVIGHSACGGIK 220 (268)
Q Consensus 205 V~~IVV~GHT~CGai~ 220 (268)
+++|+++||++||=-.
T Consensus 2 ~r~i~ivG~~~~GKTs 17 (194)
T cd01891 2 IRNIAIIAHVDHGKTT 17 (194)
T ss_pred ccEEEEEecCCCCHHH
Confidence 5799999999999443
No 28
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=26.03 E-value=2e+02 Score=23.58 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=33.4
Q ss_pred CCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccCCchHHHHh
Q 024356 168 PGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (268)
Q Consensus 168 pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa 222 (268)
+||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|.+.
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~T 129 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLAT 129 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEehh
Confidence 39999999866665332 2555677899999999998777777653
No 29
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=25.74 E-value=78 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCccEEEEeccCCchHHHHh
Q 024356 193 GAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (268)
Q Consensus 193 ~asLEyAV~~L~V~~IVV~GHT~CGai~Aa 222 (268)
...|...+..++.+.++|+|||-=|.+...
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~ 82 (228)
T PF12697_consen 53 AEDLAELLDALGIKKVILVGHSMGGMIALR 82 (228)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETHHHHHHHH
T ss_pred hhhhhhcccccccccccccccccccccccc
Confidence 456777888999999999999987766643
No 30
>PRK03592 haloalkane dehalogenase; Provisional
Probab=25.43 E-value=72 Score=28.37 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCccEEEEeccCCchHHHHhh
Q 024356 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 194 asLEyAV~~L~V~~IVV~GHT~CGai~Aa~ 223 (268)
..+.-.+..|+.+.++|+|||--|.+...+
T Consensus 81 ~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~ 110 (295)
T PRK03592 81 RYLDAWFDALGLDDVVLVGHDWGSALGFDW 110 (295)
T ss_pred HHHHHHHHHhCCCCeEEEEECHHHHHHHHH
Confidence 445556778899999999999999988654
No 31
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.94 E-value=86 Score=29.06 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=33.7
Q ss_pred cccCCCCccccchhhhhhhhhHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHhhcC
Q 024356 50 VFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQT 105 (268)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~s~~~ai~~~~~~l~~~~~l~~~a~~~i~~~t~el~~ 105 (268)
+++||+|+ .|....|.++-++.|.+.+...+.....-...|+.+.+|+..
T Consensus 23 ~~~a~a~v------~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~ 72 (263)
T PRK10803 23 AAFAQAPI------SSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS 72 (263)
T ss_pred HHhcCCcH------HHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 56789998 344566778888888888877665444444566666655543
No 32
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=24.68 E-value=83 Score=28.37 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhc-CccEEEEeccCCchHHHHh
Q 024356 191 GVGAAVEYAVLHL-KVSNIVVIGHSACGGIKGL 222 (268)
Q Consensus 191 ~v~asLEyAV~~L-~V~~IVV~GHT~CGai~Aa 222 (268)
.+.+++++....+ +.+.|+++|||- ||+-++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~ 115 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAAL 115 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHH
Confidence 3555666544443 678899999998 555554
No 33
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=24.03 E-value=40 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.3
Q ss_pred cEEEEeccCCchHHH
Q 024356 206 SNIVVIGHSACGGIK 220 (268)
Q Consensus 206 ~~IVV~GHT~CGai~ 220 (268)
++|+++||++||=-.
T Consensus 1 rni~~vG~~~~GKss 15 (179)
T cd01890 1 RNFSIIAHIDHGKST 15 (179)
T ss_pred CcEEEEeecCCCHHH
Confidence 479999999999544
No 34
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=23.97 E-value=63 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=16.8
Q ss_pred CccEEEEeccC--CchHHHHhh
Q 024356 204 KVSNIVVIGHS--ACGGIKGLM 223 (268)
Q Consensus 204 ~V~~IVV~GHT--~CGai~Aa~ 223 (268)
+-+.|+|+||. |+-|+.+++
T Consensus 4 ~~~~i~i~~H~~~D~Dgl~Sa~ 25 (145)
T PF01368_consen 4 EAERILIVGHINPDADGLGSAI 25 (145)
T ss_dssp TTSEEEEEEBSS-SHHHHHHHH
T ss_pred CCCEEEEEccCCCCchHHHHHH
Confidence 45789999999 998888765
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.55 E-value=46 Score=31.25 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=14.0
Q ss_pred ccEEEEeccCCchHHHH
Q 024356 205 VSNIVVIGHSACGGIKG 221 (268)
Q Consensus 205 V~~IVV~GHT~CGai~A 221 (268)
-+-|.|+|||+||=-+-
T Consensus 29 GEfvsilGpSGcGKSTL 45 (248)
T COG1116 29 GEFVAILGPSGCGKSTL 45 (248)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 36899999999997654
No 36
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.41 E-value=1e+02 Score=24.25 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCccEEEEeccCCchHHHHhh
Q 024356 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (268)
Q Consensus 192 v~asLEyAV~~L~V~~IVV~GHT~CGai~Aa~ 223 (268)
+...|.-.+...+-..|+|.|||-=|++..++
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~ 81 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLA 81 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHH
Confidence 34445555556666899999999999988654
No 37
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=23.19 E-value=86 Score=27.86 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCccEEEEeccCCchHHHHh
Q 024356 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (268)
Q Consensus 194 asLEyAV~~L~V~~IVV~GHT~CGai~Aa 222 (268)
..+.-.+..++.+.++++|||--|.+...
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~ 118 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQ 118 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHH
Confidence 34444566788899999999999988853
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.51 E-value=43 Score=26.86 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.3
Q ss_pred EEEEeccCCchHHHH
Q 024356 207 NIVVIGHSACGGIKG 221 (268)
Q Consensus 207 ~IVV~GHT~CGai~A 221 (268)
.|+|+||.+||=-.-
T Consensus 1 ~i~~vG~~~~GKstL 15 (167)
T cd04160 1 SVLILGLDNAGKTTF 15 (167)
T ss_pred CEEEEecCCCCHHHH
Confidence 489999999996653
No 39
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=21.74 E-value=1.1e+02 Score=30.02 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=30.0
Q ss_pred ccccCCCCCceEEEeecCCCCCCCCCcccchhH-HHHHHHHHhcCccEEEEecc
Q 024356 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG-AAVEYAVLHLKVSNIVVIGH 213 (268)
Q Consensus 161 e~If~~~pGD~FVvRNaGNiV~~~d~~~~~~v~-asLEyAV~~L~V~~IVV~GH 213 (268)
..+.++++|| .||.|.||-. |. +.|+ -+..+|.+.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQ-laka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQ-LAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHH-HHHHhCcceEEEeec
Confidence 4667899999 8999999953 33 3455 446889988877654
No 40
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=21.34 E-value=2e+02 Score=24.37 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=29.7
Q ss_pred CCCCCceEEEeecCCCCCCCCCcccchhHHHHHHHHHhcCccEEEEeccC-CchHHHHhh
Q 024356 165 DFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHS-ACGGIKGLM 223 (268)
Q Consensus 165 ~~~pGD~FVvRNaGNiV~~~d~~~~~~v~asLEyAV~~L~V~~IVV~GHT-~CGai~Aa~ 223 (268)
.-.+||..+.++.-+-. .+ ..|+.-+...|+++|||+|=. +|.....+.
T Consensus 84 ~~~~~~~v~~K~~~saF--------~~--t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~ 133 (179)
T cd01015 84 APQEDEMVLVKKYASAF--------FG--TSLAATLTARGVDTLIVAGCSTSGCIRATAV 133 (179)
T ss_pred CCCCCCEEEecCccCCc--------cC--CcHHHHHHHcCCCEEEEeeecccHhHHHHHH
Confidence 44578876666532221 11 247777889999999999964 333333343
No 41
>PRK10566 esterase; Provisional
Probab=21.27 E-value=1.1e+02 Score=26.28 Aligned_cols=27 Identities=19% Similarity=-0.010 Sum_probs=16.5
Q ss_pred HHHHHHHHh--cCccEEEEeccCCchHHH
Q 024356 194 AAVEYAVLH--LKVSNIVVIGHSACGGIK 220 (268)
Q Consensus 194 asLEyAV~~--L~V~~IVV~GHT~CGai~ 220 (268)
..+++.... +..+.|+|+|||-=|.+.
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~Gg~~a 121 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASMGGMTA 121 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecccHHHH
Confidence 344444333 345789999999944444
No 42
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.02 E-value=1.9e+02 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHhh--hcCCch
Q 024356 68 NQSYEEAIEALKKLLK--EKEDLK 89 (268)
Q Consensus 68 ~~s~~~ai~~~~~~l~--~~~~l~ 89 (268)
..||+++++.|...+. +++++.
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~ 28 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVS 28 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCC
Confidence 3489999998887665 444444
No 43
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.58 E-value=2e+02 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHhh--hcCCch
Q 024356 69 QSYEEAIEALKKLLK--EKEDLK 89 (268)
Q Consensus 69 ~s~~~ai~~~~~~l~--~~~~l~ 89 (268)
.+|+++++.|..++. +++++.
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~ 28 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSAS 28 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCC
Confidence 379999988876665 444444
No 44
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.25 E-value=64 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=14.7
Q ss_pred CccEEEEeccCCchHHHH
Q 024356 204 KVSNIVVIGHSACGGIKG 221 (268)
Q Consensus 204 ~V~~IVV~GHT~CGai~A 221 (268)
++..|+|+||++||=-.-
T Consensus 40 ~~~~I~iiG~~g~GKStL 57 (204)
T cd01878 40 GIPTVALVGYTNAGKSTL 57 (204)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467999999999996553
Done!