BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024357
MHTVALVALSGSRFLARPSPTLFLHTNANAKSRNYSSRPFCRCCLRRKQNRQSLSKTWPS
ISLALFSAGFFLGPAIDGLHSRVNLVVYENGSINVGPLHTNIWVPPLLGLFYCTVGLLQL
FLDDTDSDRASSESEVPDDGSLQKTVFALITLLLFIELSAELYKAGVGDNIEAYILFAVA
ELIWFSLDRTWLGFTLASIIGLVCPLAEIPIMKLFHLWYYPKANIEILGQGLVAWTITCY
FVYTPFLINLSRWLRSIVVAADSEGKST

High Scoring Gene Products

Symbol, full name Information P value
AT4G01935 protein from Arabidopsis thaliana 6.6e-81

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024357
        (268 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504955233 - symbol:AT4G01935 "AT4G01935" speci...   812  6.6e-81   1


>TAIR|locus:504955233 [details] [associations]
            symbol:AT4G01935 "AT4G01935" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 UniGene:At.48822 UniGene:At.66619
            UniGene:At.70531 IPI:IPI00540358 RefSeq:NP_680559.2
            EnsemblPlants:AT4G01935.1 GeneID:828195 KEGG:ath:AT4G01935
            OMA:NIEAYIL PhylomeDB:F4JH58 Uniprot:F4JH58
        Length = 256

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 154/245 (62%), Positives = 191/245 (77%)

Query:    15 LARPSPTLFLHTNANAKSRNYSSRPFCRCCLRRKQNRQSLSKTW-PSISLALFSAGFFLG 73
             ++ PS TL      N  +R+   +  C    +RKQ++ S  K+W   +SL+LF +GF LG
Sbjct:     6 ISSPSTTLIKPLKRNGPNRSPVRKILCLS--QRKQSKTSTGKSWIVPVSLSLFGSGFVLG 63

Query:    74 PAIDGLHSRVNLVVYENGSINVGPLHTNIWVPPLLGLFYCTVGLLQLFLDDTDSDRASSE 133
             P +DG+HSRV+LVVY+NG+  +GPLHTNIWVP LLGLFYCTVGLLQL LD+T S  AS  
Sbjct:    64 PLLDGIHSRVDLVVYQNGAFQIGPLHTNIWVPFLLGLFYCTVGLLQLLLDETTS--AS-- 119

Query:   134 SEVPDDGSLQKTVFALITLLLFIELSAELYKAGVGDNIEAYILFAVAELIWFSLDRTWLG 193
                P  GSL KTV +L+ L+ F+ELSAE+YKAGV DNIEAYILFA+AE IWFSLDRTW+ 
Sbjct:   120 ---PPRGSLDKTVISLLALMFFLELSAEMYKAGVSDNIEAYILFALAEFIWFSLDRTWIC 176

Query:   194 FTLASIIGLVCPLAEIPIMKLFHLWYYPKANIEILGQGLVAWTITCYFVYTPFLINLSRW 253
             FT+A+++G+ CPLAEIPIM+ FHLWYYP+ANIEI GQGLV WT TCYFVYTPFLINL+RW
Sbjct:   177 FTIATLLGVACPLAEIPIMQFFHLWYYPEANIEIFGQGLVTWTTTCYFVYTPFLINLARW 236

Query:   254 LRSIV 258
             LR+++
Sbjct:   237 LRTVM 241


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      268       268   0.00096  114 3  11 22  0.41    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  204 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.77u 0.13s 20.90t   Elapsed:  00:00:01
  Total cpu time:  20.77u 0.13s 20.90t   Elapsed:  00:00:01
  Start:  Fri May 10 02:37:59 2013   End:  Fri May 10 02:38:00 2013

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