BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024357
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AD1|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens
pdb|4AD2|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD3|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD4|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Isofagomine And Alpha-1,2-Mannobiose
pdb|4AD5|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin And Alpha-1,2-Mannobiose
Length = 380
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 195 TLASIIGLVCPLAEIPIMKL-FHLWYYPKANIEILGQGLVAWTITCY------------- 240
T A IGL+ A+ +K+ FHL YP N++ L + +V IT Y
Sbjct: 132 TEAKRIGLILDAADKKKIKVCFHLEPYPSRNVQNLRENIVK-LITRYGNHPAFYRKDGKP 190
Query: 241 --FVYTPFLINLSRWLR 255
F+Y +LI S W +
Sbjct: 191 LFFIYDSYLIEPSEWEK 207
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 56 KTWPS-ISLALFSAGFFLGPAIDG-----------LHSRVNLVVYENGSIN------VGP 97
+T+P IS+A+F +G GP ID L N V YENG N GP
Sbjct: 100 ETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159
Query: 98 --LHTNIW-VPPLLGLFYCTVGLLQLFL 122
L TN++ + P+ L T + L+L
Sbjct: 160 KFLATNVYHLSPIEDLALATALVRPLYL 187
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 56 KTWPS-ISLALFSAGFFLGPAIDG-----------LHSRVNLVVYENGSIN------VGP 97
+T+P IS+A+F +G GP ID L N V YENG N GP
Sbjct: 100 ETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159
Query: 98 --LHTNIW-VPPLLGLFYCTVGLLQLFL 122
L TN++ + P+ L T + L+L
Sbjct: 160 KFLATNVYHLSPIEDLALATALVRPLYL 187
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 56 KTWPS-ISLALFSAGFFLGPAIDG-----------LHSRVNLVVYENGSIN------VGP 97
+T+P IS+A+F +G GP ID L N V YENG N GP
Sbjct: 100 ETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAGP 159
Query: 98 --LHTNIW-VPPLLGLFYCTVGLLQLFL 122
L TN++ + P+ L T + L+L
Sbjct: 160 KFLATNVYHLSPIEDLALATALVRPLYL 187
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 117 LLQLFLDDTDSDRASSESEVPDDGSLQKTVFALITLL 153
L + ++ D DS+ ASSE + +D L K F + L+
Sbjct: 283 LCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLV 319
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 117 LLQLFLDDTDSDRASSESEVPDDGSLQKTVFALITLL 153
L + ++ D DS+ ASSE + +D L K F + L+
Sbjct: 283 LCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLV 319
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 83 VNLVVYENGSINVGPLHTNIWVPPLLGLFYCTVGLLQLFLDDTDSDRASSESE 135
V + Y+N +NV L + P +Y + +D TD DR S+ S+
Sbjct: 54 VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,589,119
Number of Sequences: 62578
Number of extensions: 292961
Number of successful extensions: 608
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 7
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)