Query 024357
Match_columns 268
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07281 INSIG: Insulin-induce 100.0 2.9E-44 6.2E-49 316.0 9.5 185 60-255 3-193 (193)
2 KOG4363 Putative growth respon 100.0 7.7E-34 1.7E-38 258.8 1.8 183 58-256 82-269 (270)
3 COG3071 HemY Uncharacterized e 42.7 37 0.0008 34.2 4.5 58 58-121 3-62 (400)
4 PF10011 DUF2254: Predicted me 29.4 3.5E+02 0.0076 26.2 8.8 28 100-127 4-31 (371)
5 COG3771 Predicted membrane pro 25.3 68 0.0015 26.4 2.6 22 58-79 41-62 (97)
6 PF11086 DUF2878: Protein of u 22.8 2.7E+02 0.0057 24.0 6.0 60 191-257 43-102 (152)
7 PF05675 DUF817: Protein of un 15.7 94 0.002 29.3 1.7 73 184-260 53-126 (235)
8 PRK12585 putative monovalent c 13.9 5.2E+02 0.011 23.9 5.9 37 191-240 68-104 (197)
9 TIGR03462 CarR_dom_SF lycopene 13.4 2.3E+02 0.0049 21.8 3.1 24 208-236 46-69 (89)
10 COG5336 Uncharacterized protei 13.0 2.3E+02 0.005 24.2 3.1 37 170-208 51-91 (116)
No 1
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=100.00 E-value=2.9e-44 Score=316.05 Aligned_cols=185 Identities=25% Similarity=0.392 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccceeeecCCccccCCccccccccchhhHHHHHHhhhhhhcccccCCCCCCCCCCCCC
Q 024357 60 SISLALFSAGFFLGPAIDGLHSRVNLVVYENGSINVGPLHTNIWVPPLLGLFYCTVGLLQLFLDDTDSDRASSESEVPDD 139 (268)
Q Consensus 60 ~~~~~LF~~G~~LGplLD~lHsr~~v~~Y~~~~i~~g~l~T~wWVPpl~G~a~~~VGlL~p~LD~~l~~~~~~e~k~~~~ 139 (268)
.++++||++|+++|++++.+|.+.|+..++. .++.+.++|+|||||+||++++++|++||++|++++++++.+++ ++
T Consensus 3 ~r~~vLF~~Gv~yg~l~~~L~~~~~~~~~p~-~v~~~~~~~~wwvp~~~G~agv~~G~l~P~lD~~~~~~~~~~~~--~~ 79 (193)
T PF07281_consen 3 LRGLVLFGLGVFYGLLVTHLHDHRNVTLFPV-KVISGPFSTSWWVPPLWGLAGVLLGLLLPWLDSFLGESKPRSSR--KP 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCccCc-cccccccCCcchhhHHHHHHHHHHHhhHHHHHHhcccccccCCc--cc
Confidence 3678999999999999999999999999886 56678899999999999999999999999999999776222111 23
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHhHhhhhccCcchhHHHHHHHhhhhchhhhhhhh-----
Q 024357 140 GSLQKTVFALITLLLFIELSAELYKAGVG-DNIEAYILFAVAELIWFSLDRTWLGFTLASIIGLVCPLAEIPIMK----- 213 (268)
Q Consensus 140 ~~~~k~~~~l~~~a~fi~lSa~ly~agv~-~~qls~~Laa~A~~lW~~FDrT~~Gf~la~l~A~~apl~ei~Lv~----- 213 (268)
++.+++||+++|++++..+.+...+ +.|.+.++++++.++||+||||++||.+++++|++||++|+.+++
T Consensus 80 ----~w~~v~R~i~~FvGi~~airkl~w~s~~Q~s~~lalln~~LW~lfDrT~sGf~ls~~va~~g~~~~~~l~~~~~~~ 155 (193)
T PF07281_consen 80 ----DWSSVLRSIGAFVGISFAIRKLPWSSSLQASITLALLNPGLWWLFDRTRSGFLLSTAVALLGTLIEYGLVPDAVML 155 (193)
T ss_pred ----cHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhheeeccccccc
Confidence 3479999999999988888875443 579999999999999999999999999999999999999999997
Q ss_pred cccccccCCcchhhccccceecceeeEeeechhhHHHHHHHH
Q 024357 214 LFHLWYYPKANIEILGQGLVAWTITCYFVYTPFLINLSRWLR 255 (268)
Q Consensus 214 ~~~l~~Y~~pD~~~~g~gv~SW~p~~YF~ggp~vgNL~R~L~ 255 (268)
.+++|+|.+||++ ++++|+||+|||+++.+|||||||+
T Consensus 156 ~~~~~~~~~~d~~----~v~~Wi~sv~Fcg~v~fGniGR~La 193 (193)
T PF07281_consen 156 ENGVYSYTSPDFL----AVRSWIPSVLFCGCVCFGNIGRQLA 193 (193)
T ss_pred cccceeccccchh----HHHHHHHHHHHhCcceEeeehhccC
Confidence 4699999999997 8999999999999999999999986
No 2
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=99.98 E-value=7.7e-34 Score=258.80 Aligned_cols=183 Identities=20% Similarity=0.275 Sum_probs=165.3
Q ss_pred hhhHHHHHHHHH--HHHHHhhhhhhcccceeeecCCccccCCccccccccchhhHHHHHHhhhhhhcccccCCCCCCCCC
Q 024357 58 WPSISLALFSAG--FFLGPAIDGLHSRVNLVVYENGSINVGPLHTNIWVPPLLGLFYCTVGLLQLFLDDTDSDRASSESE 135 (268)
Q Consensus 58 ~p~~~~~LF~~G--~~LGplLD~lHsr~~v~~Y~~~~i~~g~l~T~wWVPpl~G~a~~~VGlL~p~LD~~l~~~~~~e~k 135 (268)
.=...+.+|++| ++++..++.++.+.|++.++++++. ..+.+.||+|||||++++++|++|||+|.|+|||++.
T Consensus 82 ~dded~~~f~~~~~v~~~l~~~ll~i~~~~v~~~k~pll-p~f~~~w~feP~~g~~s~v~gl~Y~~iD~~lg~P~~k--- 157 (270)
T KOG4363|consen 82 LDDEDVVLFSVGDGVLLALVLNLLQIQENVVLDPKGPLL-PIFSSAWWFEPCCGTASAVKGLLYPCIDGHLGEPHKK--- 157 (270)
T ss_pred ecccccchhhccchhhhhhcchHHhhhccceecCCccee-ehhhhhhhCCcchhHHHHHhhheeeeecccCCCCCcc---
Confidence 336778899998 9999999999999999999998864 7789999999999999999999999999999988865
Q ss_pred CCCCCcchhHHHHHHHHHHHH---HHHHHHHHhcCCchHHHHHHHHHHhHhhhhccCcchhHHHHHHHhhhhchhhhhhh
Q 024357 136 VPDDGSLQKTVFALITLLLFI---ELSAELYKAGVGDNIEAYILFAVAELIWFSLDRTWLGFTLASIIGLVCPLAEIPIM 212 (268)
Q Consensus 136 ~~~~~~~~k~~~~l~~~a~fi---~lSa~ly~agv~~~qls~~Laa~A~~lW~~FDrT~~Gf~la~l~A~~apl~ei~Lv 212 (268)
+++| ..++||.|.|. +.++++.+.+ +.|..+.+++++.++||+||||++|++|+.++++.+|.+++.||
T Consensus 158 --e~~w----l~~sR~~A~f~~~~~s~~ks~f~~--n~q~i~~l~als~~iw~vfDrsrsg~~L~ei~~~l~p~vtknlV 229 (270)
T KOG4363|consen 158 --EREW----LWVSRCNAVFVGINHSSAKSDFKN--NKQLILTLAALSRGIWYVFDRSRSGGGLGEIIAFLAPQVTKNLV 229 (270)
T ss_pred --chhh----hhhhhHHHHHHhhhhccccCcccc--CceeeecHHHHhhhhhheeccccccchhHHHHHHHHHHHHHHHH
Confidence 3455 57788888875 5777888754 78999999999999999999999999999999999999999999
Q ss_pred hcccccccCCcchhhccccceecceeeEeeechhhHHHHHHHHH
Q 024357 213 KLFHLWYYPKANIEILGQGLVAWTITCYFVYTPFLINLSRWLRS 256 (268)
Q Consensus 213 ~~~~l~~Y~~pD~~~~g~gv~SW~p~~YF~ggp~vgNL~R~L~~ 256 (268)
+ +++|.|+.+|+. .++|+|+||++|+++.++||+||||+|
T Consensus 230 ~-ntv~eya~r~fk---~~~R~Wipki~Fa~~~~~gNagr~l~~ 269 (270)
T KOG4363|consen 230 Y-NTVYEYASRDFK---LYPRSWIPKIFFAGGNTVGNAGRQLAM 269 (270)
T ss_pred h-hcceeeeccchh---hcccchhhhhhhcccccccccCccccC
Confidence 8 599999999983 379999999999999999999999987
No 3
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=42.72 E-value=37 Score=34.16 Aligned_cols=58 Identities=24% Similarity=0.159 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcccceeeecCCccccCCcccccc--ccchhhHHHHHHhhhhhh
Q 024357 58 WPSISLALFSAGFFLGPAIDGLHSRVNLVVYENGSINVGPLHTNIW--VPPLLGLFYCTVGLLQLF 121 (268)
Q Consensus 58 ~p~~~~~LF~~G~~LGplLD~lHsr~~v~~Y~~~~i~~g~l~T~wW--VPpl~G~a~~~VGlL~p~ 121 (268)
|--+..++|++|.++||.+-+.++.|-+. |++=-++ ++.| |+.+..+..++..+...+
T Consensus 3 ~vl~l~~ll~agi~~g~~~~~qqgyVlI~-~~~~~ie-----~Sl~~lv~~~ii~lvv~~~l~~~l 62 (400)
T COG3071 3 RVLLLFVLLLAGIGVGLAIAGQQGYVLIQ-TDNYNIE-----MSLTTLVIFLIIALVVLYLLEWLL 62 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCceEEE-ecceeee-----eeHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999988766 5653333 4444 777777776666665443
No 4
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=29.37 E-value=3.5e+02 Score=26.22 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.1
Q ss_pred ccccccchhhHHHHHHhhhhhhcccccC
Q 024357 100 TNIWVPPLLGLFYCTVGLLQLFLDDTDS 127 (268)
Q Consensus 100 T~wWVPpl~G~a~~~VGlL~p~LD~~l~ 127 (268)
+-|.+|.++.+++++.+.+-+.+|....
T Consensus 4 s~Wf~P~l~~~~av~la~~~~~ld~~~~ 31 (371)
T PF10011_consen 4 SFWFRPLLYAVLAVVLAFLTPYLDRLLP 31 (371)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566999999999999999999999886
No 5
>COG3771 Predicted membrane protein [Function unknown]
Probab=25.30 E-value=68 Score=26.36 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhh
Q 024357 58 WPSISLALFSAGFFLGPAIDGL 79 (268)
Q Consensus 58 ~p~~~~~LF~~G~~LGplLD~l 79 (268)
.....++||++|+.+|.++-++
T Consensus 41 LSTLla~lF~~G~~lgwli~g~ 62 (97)
T COG3771 41 LSTLLATLFAAGFALGWLICGL 62 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999988764
No 6
>PF11086 DUF2878: Protein of unknown function (DUF2878); InterPro: IPR021306 This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=22.80 E-value=2.7e+02 Score=23.99 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=43.6
Q ss_pred chhHHHHHHHhhhhchhhhhhhhcccccccCCcchhhccccceecceeeEeeechhhHHHHHHHHHh
Q 024357 191 WLGFTLASIIGLVCPLAEIPIMKLFHLWYYPKANIEILGQGLVAWTITCYFVYTPFLINLSRWLRSI 257 (268)
Q Consensus 191 ~~Gf~la~l~A~~apl~ei~Lv~~~~l~~Y~~pD~~~~g~gv~SW~p~~YF~ggp~vgNL~R~L~~~ 257 (268)
+.-.-+-+.+++.|-+++..+++ .|+.+|+++. ..|-|+.+.-+..+.++--.=++++++
T Consensus 43 ~~~~~~~~~~~~~G~~~D~~l~~-~Gv~~f~~~~------~~PlWL~~LW~~Fa~~l~~sl~wL~~~ 102 (152)
T PF11086_consen 43 RAELRLLLLAALLGILLDSLLLY-LGVFSFPGSS------LFPLWLILLWLAFATTLNHSLAWLRRR 102 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-CCeeecCCCC------CccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344466777777889999998 5999995544 489999988888777766555666553
No 7
>PF05675 DUF817: Protein of unknown function (DUF817); InterPro: IPR008535 This family consists of several bacterial proteins of unknown function.
Probab=15.68 E-value=94 Score=29.31 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=54.0
Q ss_pred hhhccCcchhHHHHHHHhhhhchhhhhhhhcccccccCCcchh-hccccceecceeeEeeechhhHHHHHHHHHhhhh
Q 024357 184 WFSLDRTWLGFTLASIIGLVCPLAEIPIMKLFHLWYYPKANIE-ILGQGLVAWTITCYFVYTPFLINLSRWLRSIVVA 260 (268)
Q Consensus 184 W~~FDrT~~Gf~la~l~A~~apl~ei~Lv~~~~l~~Y~~pD~~-~~g~gv~SW~p~~YF~ggp~vgNL~R~L~~~l~~ 260 (268)
|.=++ |+.=.-+=++-=+.|+..|++-++. |-|+||++-+. |+ |||.-..-.|-+-|.-+...=|-++.++..
T Consensus 53 ~~klE-T~~E~kVI~lFHvvG~~mElFKt~~-GSWsYPe~~~~ki~--gVPLfsGFMYAaVGSYi~rawR~fdlr~~~ 126 (235)
T PF05675_consen 53 WFKLE-TWDEAKVIALFHVVGTAMELFKTHM-GSWSYPEEAVFKIG--GVPLFSGFMYAAVGSYIARAWRLFDLRFTR 126 (235)
T ss_pred HhCcc-cHHHHHHHHHHHHHHHHHHHHhccC-CCccCCcccceeec--CcccccchHHHHHHHHHHHHHHHhheehhC
Confidence 33344 7777777777778889999999995 89999999874 34 688877777777777777766666665543
No 8
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=13.90 E-value=5.2e+02 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.093 Sum_probs=24.4
Q ss_pred chhHHHHHHHhhhhchhhhhhhhcccccccCCcchhhccccceecceeeE
Q 024357 191 WLGFTLASIIGLVCPLAEIPIMKLFHLWYYPKANIEILGQGLVAWTITCY 240 (268)
Q Consensus 191 ~~Gf~la~l~A~~apl~ei~Lv~~~~l~~Y~~pD~~~~g~gv~SW~p~~Y 240 (268)
..-+.+..++-+.+|++...+.+. .|. .|++.| |++|
T Consensus 68 lklLLiIvFllLTaPVaSHaIARA----Ayr--------~Gv~~w-~~~~ 104 (197)
T PRK12585 68 ARVLLAVLFIFLTTPVASHLINRA----AYD--------TGVPLA-IRIR 104 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHH--------cCCCcc-hhhH
Confidence 444555566777889988888764 111 277888 7764
No 9
>TIGR03462 CarR_dom_SF lycopene cyclase domain. The domain is generally hydrophobic with a number of predicted membrane spanning segments and contains a distinctive motif (hPhEEhhhhhh). In certain sequences one of either the proline or glutamates may vary, but always one of the tandem pair appear to match this canonical sequence exactly.
Probab=13.39 E-value=2.3e+02 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.0
Q ss_pred hhhhhhcccccccCCcchhhccccceecc
Q 024357 208 EIPIMKLFHLWYYPKANIEILGQGLVAWT 236 (268)
Q Consensus 208 ei~Lv~~~~l~~Y~~pD~~~~g~gv~SW~ 236 (268)
...+++ .|+|.|+++... |++-+.
T Consensus 46 D~~~i~-~gvw~y~~~~~~----Gi~l~~ 69 (89)
T TIGR03462 46 DNLAIR-RGVWTYNPRYIL----GIRLGD 69 (89)
T ss_pred hHHheE-CCEEEECCCcEE----EEEecC
Confidence 455566 599999998775 766553
No 10
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=13.01 E-value=2.3e+02 Score=24.16 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHhhhhccC----cchhHHHHHHHhhhhchhh
Q 024357 170 NIEAYILFAVAELIWFSLDR----TWLGFTLASIIGLVCPLAE 208 (268)
Q Consensus 170 ~qls~~Laa~A~~lW~~FDr----T~~Gf~la~l~A~~apl~e 208 (268)
..++.+|..+-++ |++|+ ++-|+++-.|+|+++-+..
T Consensus 51 efIsGilVGa~iG--~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 51 EFISGILVGAGIG--WLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHH--HHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4456677766555 66664 7889999999999875443
Done!