Query 024357
Match_columns 268
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p58_D Envelope protein M; fla 10.7 2.2E+02 0.0074 21.2 3.3 39 167-206 32-73 (75)
2 3j27_B Matrix protein, small e 7.8 3.5E+02 0.012 20.0 3.4 32 174-206 42-73 (75)
3 2nx7_A Nematocyst outer WALL a 7.2 1.2E+02 0.004 18.8 0.4 10 38-47 17-28 (28)
4 2kwt_A Protease NS2-3; NS2 dom 6.1 1.3E+02 0.0044 19.5 0.2 7 101-107 23-29 (33)
5 3kxy_T EXSE; type-three secret 5.2 2.5E+02 0.0084 20.3 1.3 16 246-261 25-40 (66)
6 1yew_C Particulate methane mon 4.9 6.3E+02 0.022 23.3 4.1 106 104-219 97-231 (289)
7 1w8x_P Protein P16, protein S, 4.3 1.7E+02 0.0059 23.0 -0.1 10 74-83 91-100 (117)
8 1xrd_A LH-1, light-harvesting 3.8 5E+02 0.017 18.2 1.9 30 183-212 4-33 (52)
9 1ijd_A Light-harvesting protei 3.7 2.7E+02 0.0091 19.8 0.5 23 100-122 12-34 (53)
10 2zvv_Y Cyclin-dependent kinase 3.7 4.1E+02 0.014 16.2 1.2 16 75-90 9-24 (26)
No 1
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=10.67 E-value=2.2e+02 Score=21.23 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCchHH---HHHHHHHHhHhhhhccCcchhHHHHHHHhhhhch
Q 024357 167 VGDNIE---AYILFAVAELIWFSLDRTWLGFTLASIIGLVCPL 206 (268)
Q Consensus 167 v~~~ql---s~~Laa~A~~lW~~FDrT~~Gf~la~l~A~~apl 206 (268)
+.++++ .+.+++. ...|.+.+.+.|-..+-++.-+.+|.
T Consensus 32 vE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi~~il~llvaPa 73 (75)
T 1p58_D 32 IETWILRHPGFTIMAA-ILAYTIGTTHFQRVLIFILLTAIAPS 73 (75)
T ss_pred HHHHHHHChHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhccc
Confidence 345554 3666665 78899999999999999999988885
No 2
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=7.84 E-value=3.5e+02 Score=20.04 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=25.8
Q ss_pred HHHHHHHhHhhhhccCcchhHHHHHHHhhhhch
Q 024357 174 YILFAVAELIWFSLDRTWLGFTLASIIGLVCPL 206 (268)
Q Consensus 174 ~~Laa~A~~lW~~FDrT~~Gf~la~l~A~~apl 206 (268)
+.+++.. ..|.+-+.+.|-..+-++.-+.+|.
T Consensus 42 ~al~~~~-~~w~lG~~~~Qrvi~iil~llvaPa 73 (75)
T 3j27_B 42 FTIMAAI-LAYTIGTTHFQRALIFILLTAVAPS 73 (75)
T ss_dssp HHHHHHH-HHHHSSCSSHHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-HHHHHcCChHHHHHHHHHHHHhccc
Confidence 5555544 7899999999999999999998885
No 3
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=7.19 E-value=1.2e+02 Score=18.77 Aligned_cols=10 Identities=50% Similarity=1.285 Sum_probs=5.7
Q ss_pred CCcch--hhhcc
Q 024357 38 RPFCR--CCLRR 47 (268)
Q Consensus 38 ~~~~~--~~~~~ 47 (268)
.|.|| |||+|
T Consensus 17 apacrlsccslg 28 (28)
T 2nx7_A 17 APACRLSCCSLG 28 (28)
T ss_dssp TTTCCHHHHTTC
T ss_pred cchhheeecccC
Confidence 35554 77664
No 4
>2kwt_A Protease NS2-3; NS2 domain, membrane protein, viral prote; NMR {Hepatitis c virus}
Probab=6.06 E-value=1.3e+02 Score=19.53 Aligned_cols=7 Identities=57% Similarity=1.915 Sum_probs=5.3
Q ss_pred cccccch
Q 024357 101 NIWVPPL 107 (268)
Q Consensus 101 ~wWVPpl 107 (268)
..||||+
T Consensus 23 ~vWvPpL 29 (33)
T 2kwt_A 23 QVWIPPL 29 (33)
T ss_dssp TTSCCTT
T ss_pred HhhCCCC
Confidence 5688886
No 5
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=5.23 E-value=2.5e+02 Score=20.26 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhhhc
Q 024357 246 FLINLSRWLRSIVVAA 261 (268)
Q Consensus 246 ~vgNL~R~L~~~l~~~ 261 (268)
-+..|+|||+...+-+
T Consensus 25 svaglarwlarnvagd 40 (66)
T 3kxy_T 25 SVAGLARWLARNVAGD 40 (66)
T ss_dssp CHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHhccCC
Confidence 3678999999887764
No 6
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=4.93 E-value=6.3e+02 Score=23.29 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=40.5
Q ss_pred ccchhhHHHHHHhhhhhhcccccCCCCCCCCCCCCCCcchhHHH-----HHHHHHHHHHHH--HHHHHh---cC------
Q 024357 104 VPPLLGLFYCTVGLLQLFLDDTDSDRASSESEVPDDGSLQKTVF-----ALITLLLFIELS--AELYKA---GV------ 167 (268)
Q Consensus 104 VPpl~G~a~~~VGlL~p~LD~~l~~~~~~e~k~~~~~~~~k~~~-----~l~~~a~fi~lS--a~ly~a---gv------ 167 (268)
++...=.+.++.|.+..-=|+.+.. ..+++-.+|... ++-+++++-++| +++|.. .+
T Consensus 97 ~~le~~~~~~l~g~lWkTRdr~l~~-------ltP~eE~rR~~~l~~wl~vy~~avYWgaSfFtEQDgsWHQtviRDT~F 169 (289)
T 1yew_C 97 IVLEIVTASILWGYLWKTRDRNLAA-------LTPREELRRNFTHLVWLVAYAWAIYWGASYFTEQDGTWHQTIVRDTDF 169 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCSS-------CCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCCSSSC
T ss_pred HHHHHHHHHHHHHheeeeccccccc-------CCcHHHHHHHHHHHHHHHHHHHHHHhhheeeecccCceeeeeeecCCC
Confidence 3444556777899999988877621 113333333322 233444444555 455542 11
Q ss_pred -CchHHH-------HHHHHHHhHhhhhccCcc-----hhHHHHHHHhhhhchhhhhhhhcccccc
Q 024357 168 -GDNIEA-------YILFAVAELIWFSLDRTW-----LGFTLASIIGLVCPLAEIPIMKLFHLWY 219 (268)
Q Consensus 168 -~~~qls-------~~Laa~A~~lW~~FDrT~-----~Gf~la~l~A~~apl~ei~Lv~~~~l~~ 219 (268)
|+|++- |+..+.+. ++.+||| .|+-++.+..+++|+..+|-|-+|...|
T Consensus 170 TPSHIi~FY~s~PiyIi~Gv~~---~lYArTRLP~~~kg~s~p~~~~v~GpfMilpnVglNEwGH 231 (289)
T 1yew_C 170 TPSHIIEFYLSYPIYIITGFAA---FIYAKTRLPFFAKGISLPYLVLVVGPFMILPNVGLNEWGH 231 (289)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHH---HHHHHHHCTTCC---------------------------C
T ss_pred ChhHHHHHHHhccHHHHHHHHH---HHHhhhcccccccCCchHHHHHHHhhHHhhhhcchhhhHH
Confidence 345442 34445444 5667776 6999999999999999999998766655
No 7
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=4.31 E-value=1.7e+02 Score=23.01 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=3.6
Q ss_pred Hhhhhhhccc
Q 024357 74 PAIDGLHSRV 83 (268)
Q Consensus 74 plLD~lHsr~ 83 (268)
-+-|.|.||.
T Consensus 91 kltdsitsql 100 (117)
T 1w8x_P 91 KLTDSITSQL 100 (117)
T ss_dssp ---CCCTTTT
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 8
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=3.77 E-value=5e+02 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=19.0
Q ss_pred hhhhccCcchhHHHHHHHhhhhchhhhhhh
Q 024357 183 IWFSLDRTWLGFTLASIIGLVCPLAEIPIM 212 (268)
Q Consensus 183 lW~~FDrT~~Gf~la~l~A~~apl~ei~Lv 212 (268)
+|.+||-.+.=.+++....+.+-++-..+.
T Consensus 4 IWl~fDPrr~Lva~~~fl~vlAl~IHfilL 33 (52)
T 1xrd_A 4 IWQLFDPRQALVGLATFLFVLALLIHFILL 33 (52)
T ss_dssp GGGTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999777755555555555545544444
No 9
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=3.75 E-value=2.7e+02 Score=19.77 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.7
Q ss_pred ccccccchhhHHHHHHhhhhhhc
Q 024357 100 TNIWVPPLLGLFYCTVGLLQLFL 122 (268)
Q Consensus 100 T~wWVPpl~G~a~~~VGlL~p~L 122 (268)
-+.|+|+++|+.+++.=+.|-.+
T Consensus 12 PtvGlPl~LgaVav~a~lVH~av 34 (53)
T 1ijd_A 12 PAFGLPLMLGAVAITALLVHAAV 34 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHH
Confidence 35688999998877655555443
No 10
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=3.73 E-value=4.1e+02 Score=16.24 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=12.5
Q ss_pred hhhhhhcccceeeecC
Q 024357 75 AIDGLHSRVNLVVYEN 90 (268)
Q Consensus 75 lLD~lHsr~~v~~Y~~ 90 (268)
+-|.+|+.+.|.-|+.
T Consensus 9 ~TDFYhsKRRlvf~~r 24 (26)
T 2zvv_Y 9 MTDFYHSKRRLIFSXX 24 (26)
T ss_pred hhHHHhhhceEEEEec
Confidence 4588999999887764
Done!