Query 024357
Match_columns 268
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 06:51:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024357.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024357hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 7.5 99 0.0072 20.2 1.9 31 183-213 4-34 (52)
2 d3c07a2 a.121.1.1 (A:90-235) P 5.9 1.3E+02 0.0094 23.2 2.2 21 172-192 78-98 (146)
3 d2co5a1 a.4.5.48 (A:5-93) STIV 5.2 45 0.0033 23.5 -1.0 14 115-128 40-53 (89)
4 d1j83a_ b.18.1.12 (A:) Endo-1, 4.7 33 0.0024 27.6 -2.3 16 181-196 10-25 (180)
5 d1mx3a1 c.2.1.4 (A:126-318) Tr 3.5 1.7E+02 0.013 22.3 1.2 19 242-260 52-70 (193)
6 d1gl1i_ g.4.1.1 (I:) Protease 3.2 1.2E+02 0.009 18.0 0.0 10 40-49 15-24 (34)
7 d1uwwa_ b.18.1.23 (A:) Endoglu 3.2 1.2E+02 0.0088 24.3 -0.1 11 188-198 17-27 (184)
8 d1r7ma2 d.95.2.1 (A:121-225) D 3.1 1.4E+02 0.01 20.8 0.4 25 167-191 4-28 (105)
9 d1p3da1 c.5.1.1 (A:11-106) UDP 3.1 3.4E+02 0.025 18.2 2.5 19 239-257 11-31 (96)
10 d2naca1 c.2.1.4 (A:148-335) Fo 3.1 2.1E+02 0.015 21.3 1.3 19 242-260 47-65 (188)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.51 E-value=99 Score=20.24 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=23.1
Q ss_pred hhhhccCcchhHHHHHHHhhhhchhhhhhhh
Q 024357 183 IWFSLDRTWLGFTLASIIGLVCPLAEIPIMK 213 (268)
Q Consensus 183 lW~~FDrT~~Gf~la~l~A~~apl~ei~Lv~ 213 (268)
+|.+||-.|.--+++.-..+.|=++-..|+.
T Consensus 4 iW~~fDPRr~lva~~~fL~~LAl~IHfiLLS 34 (52)
T d1xrda1 4 IWQLFDPRQALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp GGGTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEecHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6999998888777777777777666655554
No 2
>d3c07a2 a.121.1.1 (A:90-235) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.90 E-value=1.3e+02 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.3
Q ss_pred HHHHHHHHHhHhhhhccCcch
Q 024357 172 EAYILFAVAELIWFSLDRTWL 192 (268)
Q Consensus 172 ls~~Laa~A~~lW~~FDrT~~ 192 (268)
+.+.+.-+.+..+|+.|.|..
T Consensus 78 ~l~W~~~l~il~fW~~D~S~~ 98 (146)
T d3c07a2 78 ELMWLSQMGLVLYWIFDRTEG 98 (146)
T ss_dssp HHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 578899999999999998863
No 3
>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}
Probab=5.15 E-value=45 Score=23.50 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=10.5
Q ss_pred HhhhhhhcccccCC
Q 024357 115 VGLLQLFLDDTDSD 128 (268)
Q Consensus 115 VGlL~p~LD~~l~~ 128 (268)
=|.+||.+|+...+
T Consensus 40 dgvlyplidslidd 53 (89)
T d2co5a1 40 DGVLYPLIDSLIDD 53 (89)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cCeehhhHHHHhhH
Confidence 37899999877643
No 4
>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium cellulovorans [TaxId: 1493]}
Probab=4.68 E-value=33 Score=27.59 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.1
Q ss_pred hHhhhhccCcchhHHH
Q 024357 181 ELIWFSLDRTWLGFTL 196 (268)
Q Consensus 181 ~~lW~~FDrT~~Gf~l 196 (268)
..+|-+=|+|.|||++
T Consensus 10 ~v~WDFNDGTtQGFgv 25 (180)
T d1j83a_ 10 SGFWDFNDGTTQGFGV 25 (180)
T ss_dssp TSSBCCTTSSCTTCEE
T ss_pred eeeeecCCCcccccee
Confidence 4678889999999864
No 5
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Probab=3.47 E-value=1.7e+02 Score=22.33 Aligned_cols=19 Identities=11% Similarity=-0.228 Sum_probs=16.2
Q ss_pred eechhhHHHHHHHHHhhhh
Q 024357 242 VYTPFLINLSRWLRSIVVA 260 (268)
Q Consensus 242 ~ggp~vgNL~R~L~~~l~~ 260 (268)
+|-+-+|||||.+++.+.+
T Consensus 52 vgIiG~G~IG~~va~~l~~ 70 (193)
T d1mx3a1 52 LGIIGLGRVGQAVALRAKA 70 (193)
T ss_dssp EEEECCSHHHHHHHHHHHT
T ss_pred EEEeccccccccceeeeec
Confidence 4667889999999998876
No 6
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=3.20 E-value=1.2e+02 Score=18.04 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=7.1
Q ss_pred cchhhhcccC
Q 024357 40 FCRCCLRRKQ 49 (268)
Q Consensus 40 ~~~~~~~~~~ 49 (268)
.|||.|-|+.
T Consensus 15 tcrc~s~gks 24 (34)
T d1gl1i_ 15 TCRCGADGKS 24 (34)
T ss_dssp EEEECTTSSC
T ss_pred eeeecCCCcc
Confidence 4788887654
No 7
>d1uwwa_ b.18.1.23 (A:) Endoglucanase (alkaline cellulase) {Bacillus sp. 1139 [TaxId: 1411]}
Probab=3.15 E-value=1.2e+02 Score=24.34 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=6.6
Q ss_pred cCcchhHHHHH
Q 024357 188 DRTWLGFTLAS 198 (268)
Q Consensus 188 DrT~~Gf~la~ 198 (268)
|+|+|||..--
T Consensus 17 DGTrQG~~~n~ 27 (184)
T d1uwwa_ 17 DGTRQGWDWAG 27 (184)
T ss_dssp SSSCTTEEECT
T ss_pred CcCeecccccC
Confidence 66777665443
No 8
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.14 E-value=1.4e+02 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCchHHHHHHHHHHhHhhhhccCcc
Q 024357 167 VGDNIEAYILFAVAELIWFSLDRTW 191 (268)
Q Consensus 167 v~~~qls~~Laa~A~~lW~~FDrT~ 191 (268)
+|.+.+.-.|--.|+..|+.=||++
T Consensus 4 iP~~li~~~Ltp~~LA~W~MDDG~~ 28 (105)
T d1r7ma2 4 IPNNLVENYLTPMSLAYWFMDDGGK 28 (105)
T ss_dssp CCTTHHHHHCCHHHHHHHHHHHEEE
T ss_pred CCHHHHHhhCCHHHHHheEecCCcc
Confidence 4555444446667889999999986
No 9
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=3.10 E-value=3.4e+02 Score=18.20 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=14.7
Q ss_pred eEee--echhhHHHHHHHHHh
Q 024357 239 CYFV--YTPFLINLSRWLRSI 257 (268)
Q Consensus 239 ~YF~--ggp~vgNL~R~L~~~ 257 (268)
+||. ||..|+.|||.|...
T Consensus 11 ihfiGigG~GMs~LA~~L~~~ 31 (96)
T d1p3da1 11 IHFIGIGGAGMSGIAEILLNE 31 (96)
T ss_dssp EEEETTTSTTHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHhC
Confidence 4554 688999999998764
No 10
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=3.08 E-value=2.1e+02 Score=21.33 Aligned_cols=19 Identities=11% Similarity=-0.190 Sum_probs=16.0
Q ss_pred eechhhHHHHHHHHHhhhh
Q 024357 242 VYTPFLINLSRWLRSIVVA 260 (268)
Q Consensus 242 ~ggp~vgNL~R~L~~~l~~ 260 (268)
+|....|++|+++++++.+
T Consensus 47 vgiiG~G~IG~~va~~l~~ 65 (188)
T d2naca1 47 VGTVAAGRIGLAVLRRLAP 65 (188)
T ss_dssp EEEECCSHHHHHHHHHHGG
T ss_pred eeeccccccchhhhhhhhc
Confidence 5666789999999999876
Done!