BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024359
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1
Length = 904
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 31 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 87
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 434 DLLSAKEIAVRAWDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 484
Query: 88 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 147
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 485 GIVFEHPTQPGNQSGGWMAKERHLEISAEAPPTLKKSISTPFMNTASKMYSMS---EVRK 541
Query: 148 KSARDGAW-------YDVSAFL 162
S+ D AW YD + FL
Sbjct: 542 HSSADSAWIIVHGHIYDATRFL 563
>sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster
GN=tin PE=2 SV=2
Length = 416
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 55 KIMVQMKQVWNWFQNRRYAIRAKSIKSPG-----KLNVTPLARDDSTPGRNVPQPVAAPI 109
K+ + QV WFQNRRY + I G KL PL DS P + P
Sbjct: 337 KLNLSATQVKIWFQNRRYKSKRGDIDCEGIAKHLKLKSEPL---DS--------PTSLPP 385
Query: 110 PIPMSASVPPT 120
PIP PPT
Sbjct: 386 PIPNHVMWPPT 396
>sp|P17570|NIA_SOLLC Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1
Length = 911
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 31 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 87
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 439 DLLSAKEIAVRATDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 489
Query: 88 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 147
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 490 GIVFEHPTQPGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYSMS---EVRK 546
Query: 148 KSARDGAW-------YDVSAFL 162
++ D AW YD S FL
Sbjct: 547 HNSSDSAWIIVHGHIYDASRFL 568
>sp|Q8L7H4|HDG4_ARATH Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana
GN=HDG4 PE=1 SV=1
Length = 709
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
R +++ +ME + +E NA P + + L++K SP QV WFQN+R
Sbjct: 94 RHTASQIQQMEALFKE--NAHPDTKTRLRLSKKLGLSP----------IQVKFWFQNKRT 141
Query: 73 AIRAKSIKS 81
I+A+ +S
Sbjct: 142 QIKAQQSRS 150
>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2
Length = 1659
Score = 32.3 bits (72), Expect = 3.3, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 102 PQPVAAPIPIPMSA-----SVPPTMPASANVPSVSTA 133
P P API P+S+ S+PP M + VPSVST+
Sbjct: 130 PLPPVAPIATPLSSATSGTSIPPLMMPAPLVPSVSTS 166
>sp|Q7XUJ5|HOX22_ORYSJ Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp.
japonica GN=HOX22 PE=2 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
RF ++ +E + HH + RE E ++ +Q +QV WFQN+R
Sbjct: 76 RFTEEQIRSLESMFHAHHAKLEPRE-----------KAELARELGLQPRQVAIWFQNKRA 124
Query: 73 AIRAKSIK 80
R+K ++
Sbjct: 125 RWRSKQLE 132
>sp|Q01IK0|HOX22_ORYSI Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica
GN=HOX22 PE=2 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
RF ++ +E + HH + RE E ++ +Q +QV WFQN+R
Sbjct: 76 RFTEEQIRSLESMFHAHHAKLEPRE-----------KAELARELGLQPRQVAIWFQNKRA 124
Query: 73 AIRAKSIK 80
R+K ++
Sbjct: 125 RWRSKQLE 132
>sp|P43697|NKX22_MESAU Homeobox protein Nkx-2.2 OS=Mesocricetus auratus GN=NKX2-2 PE=2
SV=1
Length = 273
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 5 PSNGGPAFR-------FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKI 56
P GG A + F+ A+ E+E Q+ + + P RE L +L I
Sbjct: 119 PGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASL-------------I 165
Query: 57 MVQMKQVWNWFQNRRYAI-RAKSIKSPGKLNVTPL 90
+ QV WFQN RY + RA++ K + VTPL
Sbjct: 166 RLTPTQVKIWFQNHRYKMKRARAEKG---MEVTPL 197
>sp|A6NCS4|NKX26_HUMAN Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1
Length = 301
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 19/91 (20%)
Query: 44 EKFSESPERK---GKIMVQMKQVWNWFQNRRYAIRA----KSIK------SPGKLNVTPL 90
+++ +PER+ + + QV WFQNRRY + KS++ +P ++ V L
Sbjct: 154 QRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVL 213
Query: 91 ARDDSTPGRNV--PQPVAAPIPIPMSASVPP 119
RD G+ P P A P P SA+V P
Sbjct: 214 VRD----GKPCLGPGPGAPAFPSPYSAAVSP 240
>sp|O95096|NKX22_HUMAN Homeobox protein Nkx-2.2 OS=Homo sapiens GN=NKX2-2 PE=2 SV=1
Length = 273
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 5 PSNGGPAFR-------FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKI 56
P GG A + F+ A+ E+E Q+ + + P RE L +L I
Sbjct: 119 PGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASL-------------I 165
Query: 57 MVQMKQVWNWFQNRRYAI-RAKSIKSPGKLNVTPL 90
+ QV WFQN RY + RA++ K + VTPL
Sbjct: 166 RLTPTQVKIWFQNHRYKMKRARAEKG---MEVTPL 197
>sp|Q8SWA6|HD11_ENCCU Homeobox protein HD-11 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=HD-11 PE=4 SV=1
Length = 167
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 56 IMVQMKQVWNWFQNRRYAIRAKSIKSPGKLNVTPLARDDSTPGRNVPQPVAAPI 109
I V K + WFQN R AIR K + G L LA + ++P P+ A I
Sbjct: 96 INVHPKSIQKWFQNTRQAIRKKG-STKGAL---LLAESEEHSAVDIPLPILADI 145
>sp|P42587|HNK2_XENLA Homeobox protein XENK-2 OS=Xenopus laevis PE=2 SV=1
Length = 196
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 14 FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
F+ A+ E+E Q+ + + P RE L +L I + QV WFQN RY
Sbjct: 76 FSKAQTYELERRFRQQRYLSAPEREHLASL-------------IRLTPTQVKIWFQNHRY 122
Query: 73 AI-RAKSIK--------SPGKLNVTPLARDDSTPGRNVP----QPVAAPIPIPMSA 115
+ RA+S K SP ++ V L R D P + P P IP SA
Sbjct: 123 KMKRARSEKGMEVTPLPSPRRVAVPVLVR-DGKPCHTLKAQDFNPATFPTGIPFSA 177
>sp|P42586|NKX22_MOUSE Homeobox protein Nkx-2.2 OS=Mus musculus GN=Nkx2-2 PE=1 SV=2
Length = 273
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 14 FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
F+ A+ E+E Q+ + + P RE L +L I + QV WFQN RY
Sbjct: 135 FSKAQTYELERRFRQQRYLSAPEREHLASL-------------IRLTPTQVKIWFQNHRY 181
Query: 73 AI-RAKSIKSPGKLNVTPL 90
+ RA++ K + VTPL
Sbjct: 182 KMKRARAEKG---MEVTPL 197
>sp|P08509|NIA2_TOBAC Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2
Length = 904
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 31 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 87
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 434 DLLSAKEIAVRAWDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 484
Query: 88 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 147
+ + PG +A + +SA P T+ S + P ++TA + S S E
Sbjct: 485 GIVFEHPTQPGNQSGGWMAKERHLEISAEAPQTLKKSISTPFMNTASKMYSMS---EVRK 541
Query: 148 KSARDGAW-------YDVSAFL 162
S+ D AW YD + FL
Sbjct: 542 HSSADSAWIIVHGHIYDATRFL 563
>sp|P97334|NKX23_MOUSE Homeobox protein Nkx-2.3 OS=Mus musculus GN=Nkx2-3 PE=2 SV=2
Length = 362
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 3 RPPSNGGPAFRFNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMK 61
+P S P F+ A+V E+E Q+ + + P RE L + + +
Sbjct: 141 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS-------------SLKLTST 187
Query: 62 QVWNWFQNRRYAIR 75
QV WFQNRRY +
Sbjct: 188 QVKIWFQNRRYKCK 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,112,378
Number of Sequences: 539616
Number of extensions: 4090877
Number of successful extensions: 18454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 18016
Number of HSP's gapped (non-prelim): 459
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)