Query 024360
Match_columns 268
No_of_seqs 339 out of 3124
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1534 Putative transcription 100.0 1.4E-62 2.9E-67 413.6 17.9 264 1-267 2-269 (273)
2 KOG1533 Predicted GTPase [Gene 100.0 1.1E-60 2.4E-65 407.7 18.0 249 1-251 1-255 (290)
3 PF03029 ATP_bind_1: Conserved 100.0 2.7E-51 5.9E-56 360.6 13.1 236 7-250 1-238 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 3.8E-37 8.2E-42 268.7 16.0 246 2-252 19-267 (366)
5 PRK13768 GTPase; Provisional 100.0 3.6E-30 7.7E-35 228.7 23.2 248 1-254 1-252 (253)
6 COG1126 GlnQ ABC-type polar am 100.0 1.5E-28 3.3E-33 209.2 8.8 137 3-152 29-204 (240)
7 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.8E-28 8.2E-33 213.3 8.5 137 3-152 31-207 (254)
8 COG1120 FepC ABC-type cobalami 99.9 1.4E-27 3E-32 210.7 6.7 137 3-152 29-207 (258)
9 COG4555 NatA ABC-type Na+ tran 99.9 4.5E-27 9.6E-32 198.2 7.8 137 3-152 29-201 (245)
10 COG1131 CcmA ABC-type multidru 99.9 1.3E-25 2.9E-30 203.3 13.7 141 3-152 32-205 (293)
11 COG1116 TauB ABC-type nitrate/ 99.9 2.1E-25 4.5E-30 194.2 12.4 126 3-136 30-187 (248)
12 COG1125 OpuBA ABC-type proline 99.9 5.2E-25 1.1E-29 191.5 14.4 143 3-152 28-204 (309)
13 COG1135 AbcC ABC-type metal io 99.9 2.9E-25 6.2E-30 197.8 9.5 157 3-172 33-230 (339)
14 COG1136 SalX ABC-type antimicr 99.9 1.8E-24 3.8E-29 187.5 14.0 131 3-136 32-199 (226)
15 PRK13537 nodulation ABC transp 99.9 1.7E-24 3.8E-29 197.2 14.2 137 3-152 34-206 (306)
16 COG1127 Ttg2A ABC-type transpo 99.9 7.9E-25 1.7E-29 189.1 9.1 126 3-136 35-202 (263)
17 PRK13536 nodulation factor exp 99.9 6.5E-24 1.4E-28 196.0 14.5 137 3-152 68-240 (340)
18 COG3840 ThiQ ABC-type thiamine 99.9 1E-24 2.2E-29 181.4 7.7 139 3-154 26-200 (231)
19 TIGR01188 drrA daunorubicin re 99.9 6E-24 1.3E-28 193.3 13.3 137 3-152 20-192 (302)
20 COG1124 DppF ABC-type dipeptid 99.9 2.6E-24 5.5E-29 186.3 9.4 146 3-155 34-213 (252)
21 TIGR00960 3a0501s02 Type II (G 99.9 8.3E-24 1.8E-28 182.9 12.0 125 3-136 30-194 (216)
22 COG3839 MalK ABC-type sugar tr 99.9 8.4E-24 1.8E-28 193.2 12.3 125 3-136 30-190 (338)
23 COG2884 FtsE Predicted ATPase 99.9 1.3E-23 2.8E-28 175.8 12.1 125 3-136 29-193 (223)
24 COG4152 ABC-type uncharacteriz 99.9 7.1E-24 1.5E-28 183.4 10.2 146 3-161 29-207 (300)
25 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.8E-23 3.8E-28 181.0 12.5 125 3-136 31-197 (218)
26 TIGR02314 ABC_MetN D-methionin 99.9 2.3E-24 5E-29 199.1 7.2 137 3-152 32-209 (343)
27 COG3842 PotA ABC-type spermidi 99.9 1.9E-23 4.2E-28 191.8 13.1 126 3-137 32-194 (352)
28 cd03259 ABC_Carb_Solutes_like 99.9 2.2E-23 4.9E-28 179.8 12.7 125 3-136 27-187 (213)
29 cd03226 ABC_cobalt_CbiO_domain 99.9 2E-23 4.3E-28 179.3 11.7 125 3-136 27-182 (205)
30 TIGR02673 FtsE cell division A 99.9 2.5E-23 5.4E-28 179.6 12.2 125 3-136 29-193 (214)
31 cd03269 ABC_putative_ATPase Th 99.9 5.6E-23 1.2E-27 177.0 13.9 136 3-151 27-195 (210)
32 cd03266 ABC_NatA_sodium_export 99.9 4.2E-23 9.2E-28 178.6 13.1 125 3-136 32-192 (218)
33 COG3638 ABC-type phosphate/pho 99.9 1.8E-23 3.9E-28 180.2 10.4 157 3-168 31-232 (258)
34 cd03265 ABC_DrrA DrrA is the A 99.9 4.8E-23 1E-27 178.8 12.9 136 3-151 27-199 (220)
35 cd03293 ABC_NrtD_SsuB_transpor 99.9 4.4E-23 9.6E-28 179.0 12.5 125 3-136 31-188 (220)
36 TIGR01166 cbiO cobalt transpor 99.9 5E-23 1.1E-27 174.8 12.6 125 3-136 19-183 (190)
37 TIGR01288 nodI ATP-binding ABC 99.9 5.2E-23 1.1E-27 187.2 13.3 137 3-152 31-203 (303)
38 cd03225 ABC_cobalt_CbiO_domain 99.9 4.1E-23 8.9E-28 177.8 12.0 125 3-136 28-190 (211)
39 cd03261 ABC_Org_Solvent_Resist 99.9 4.7E-23 1E-27 180.5 12.4 125 3-136 27-193 (235)
40 COG0411 LivG ABC-type branched 99.9 3.1E-24 6.7E-29 185.8 4.7 125 3-136 31-206 (250)
41 cd03292 ABC_FtsE_transporter F 99.9 6.4E-23 1.4E-27 176.9 12.9 125 3-136 28-192 (214)
42 COG1122 CbiO ABC-type cobalt t 99.9 4.3E-24 9.2E-29 187.3 5.5 135 4-151 32-206 (235)
43 cd03268 ABC_BcrA_bacitracin_re 99.9 8.3E-23 1.8E-27 175.7 13.4 125 3-136 27-182 (208)
44 TIGR03522 GldA_ABC_ATP gliding 99.9 8E-23 1.7E-27 185.8 13.8 136 3-152 29-200 (301)
45 cd03219 ABC_Mj1267_LivG_branch 99.9 1.1E-23 2.5E-28 184.3 8.0 136 3-151 27-210 (236)
46 PRK11650 ugpC glycerol-3-phosp 99.9 5.9E-23 1.3E-27 190.7 12.9 125 3-136 31-191 (356)
47 cd03262 ABC_HisP_GlnQ_permease 99.9 7.7E-23 1.7E-27 176.2 12.7 125 3-136 27-191 (213)
48 cd03218 ABC_YhbG The ABC trans 99.9 9.9E-23 2.1E-27 177.9 13.1 125 3-136 27-189 (232)
49 COG4604 CeuD ABC-type enteroch 99.9 2E-23 4.3E-28 175.7 8.3 133 3-145 28-200 (252)
50 TIGR01184 ntrCD nitrate transp 99.9 2.5E-23 5.4E-28 182.1 9.2 136 3-151 12-182 (230)
51 PRK11629 lolD lipoprotein tran 99.9 1.1E-22 2.5E-27 177.9 13.1 125 3-136 36-202 (233)
52 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-22 2.7E-27 188.4 14.1 136 3-151 31-202 (353)
53 cd03301 ABC_MalK_N The N-termi 99.9 9.6E-23 2.1E-27 175.8 12.3 125 3-136 27-187 (213)
54 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.3E-22 2.8E-27 176.9 13.2 125 3-136 49-198 (224)
55 cd03231 ABC_CcmA_heme_exporter 99.9 1.1E-22 2.5E-27 174.3 12.2 125 3-136 27-181 (201)
56 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.4E-22 2.9E-27 174.7 12.8 136 3-151 25-196 (211)
57 TIGR01186 proV glycine betaine 99.9 8.9E-23 1.9E-27 189.7 12.3 136 3-151 20-197 (363)
58 PRK11153 metN DL-methionine tr 99.9 8.6E-23 1.9E-27 188.8 12.1 136 3-151 32-208 (343)
59 cd03258 ABC_MetN_methionine_tr 99.9 8.9E-23 1.9E-27 178.4 11.5 125 3-136 32-197 (233)
60 PRK09536 btuD corrinoid ABC tr 99.9 1.3E-22 2.8E-27 190.8 13.4 137 3-152 30-207 (402)
61 TIGR02211 LolD_lipo_ex lipopro 99.9 1.5E-22 3.3E-27 175.5 12.7 125 3-136 32-198 (221)
62 PRK11248 tauB taurine transpor 99.9 1.8E-22 3.9E-27 179.4 13.4 136 3-151 28-196 (255)
63 COG1137 YhbG ABC-type (unclass 99.9 1.4E-23 2.9E-28 176.9 5.5 137 3-152 31-207 (243)
64 PRK10908 cell division protein 99.9 1.4E-22 3.1E-27 176.0 12.0 125 3-136 29-193 (222)
65 cd03235 ABC_Metallic_Cations A 99.9 1.9E-22 4.1E-27 174.0 12.6 125 3-136 26-188 (213)
66 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.3E-22 2.8E-27 181.6 11.9 136 3-151 51-228 (269)
67 PRK13538 cytochrome c biogenes 99.9 3.3E-22 7.1E-27 171.8 13.8 125 3-136 28-185 (204)
68 cd03264 ABC_drug_resistance_li 99.9 2.1E-22 4.6E-27 173.5 12.5 123 4-136 27-185 (211)
69 cd03224 ABC_TM1139_LivF_branch 99.9 5.9E-23 1.3E-27 178.1 9.1 136 3-151 27-199 (222)
70 cd03297 ABC_ModC_molybdenum_tr 99.9 2.3E-22 5E-27 173.8 12.7 125 3-136 24-188 (214)
71 cd03296 ABC_CysA_sulfate_impor 99.9 2.2E-22 4.7E-27 176.8 12.7 125 3-136 29-193 (239)
72 cd03263 ABC_subfamily_A The AB 99.9 2.6E-22 5.6E-27 173.9 13.1 124 3-136 29-188 (220)
73 PRK11000 maltose/maltodextrin 99.9 1.8E-22 3.9E-27 188.4 12.9 125 3-136 30-190 (369)
74 TIGR02315 ABC_phnC phosphonate 99.9 1.2E-22 2.7E-27 178.5 11.2 136 3-151 29-213 (243)
75 TIGR03608 L_ocin_972_ABC putat 99.9 2.1E-22 4.5E-27 172.7 12.3 125 3-136 25-190 (206)
76 PRK09493 glnQ glutamine ABC tr 99.9 1.8E-22 3.9E-27 177.3 12.1 136 3-151 28-203 (240)
77 PRK13540 cytochrome c biogenes 99.9 5.3E-22 1.1E-26 170.0 14.6 125 3-136 28-183 (200)
78 TIGR03258 PhnT 2-aminoethylpho 99.9 2.1E-22 4.6E-27 187.3 13.1 125 3-136 32-195 (362)
79 TIGR01189 ccmA heme ABC export 99.9 3.7E-22 8E-27 170.6 13.6 125 3-136 27-183 (198)
80 COG4559 ABC-type hemin transpo 99.9 1.4E-22 3.1E-27 172.2 10.8 153 3-160 28-217 (259)
81 PRK10851 sulfate/thiosulfate t 99.9 3.5E-22 7.5E-27 185.4 14.2 136 3-151 29-204 (353)
82 PRK13647 cbiO cobalt transport 99.9 1.8E-22 3.8E-27 181.2 11.6 136 3-151 32-205 (274)
83 cd03256 ABC_PhnC_transporter A 99.9 2E-22 4.3E-27 176.9 11.6 135 3-150 28-211 (241)
84 PRK11432 fbpC ferric transport 99.9 2.9E-22 6.3E-27 185.8 13.0 135 3-150 33-203 (351)
85 TIGR03740 galliderm_ABC gallid 99.9 5.1E-22 1.1E-26 172.6 13.7 136 3-151 27-191 (223)
86 PRK13651 cobalt transporter AT 99.9 2.1E-23 4.6E-28 190.0 5.2 125 3-136 34-221 (305)
87 PRK11247 ssuB aliphatic sulfon 99.9 3.3E-22 7.2E-27 178.0 12.4 125 3-136 39-190 (257)
88 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.6E-22 1E-26 175.0 13.1 125 3-136 28-192 (242)
89 PRK13543 cytochrome c biogenes 99.9 6.6E-22 1.4E-26 171.2 13.7 137 3-152 38-205 (214)
90 PRK09452 potA putrescine/sperm 99.9 4.4E-22 9.5E-27 186.0 13.2 125 3-136 41-201 (375)
91 PRK11831 putative ABC transpor 99.9 3.8E-22 8.3E-27 178.5 12.3 125 3-136 34-200 (269)
92 COG1118 CysA ABC-type sulfate/ 99.9 7.3E-23 1.6E-27 182.3 7.5 139 3-154 29-208 (345)
93 PRK13641 cbiO cobalt transport 99.9 3.2E-22 6.8E-27 180.7 11.8 136 3-151 34-212 (287)
94 PRK10070 glycine betaine trans 99.9 3.4E-22 7.4E-27 187.9 12.4 125 3-136 55-221 (400)
95 PRK11264 putative amino-acid A 99.9 7.3E-22 1.6E-26 174.4 13.8 125 3-136 30-200 (250)
96 PRK13646 cbiO cobalt transport 99.9 3.4E-23 7.3E-28 186.9 5.0 125 3-136 34-202 (286)
97 PRK11300 livG leucine/isoleuci 99.9 5.7E-22 1.2E-26 175.6 12.7 136 3-151 32-221 (255)
98 cd03237 ABC_RNaseL_inhibitor_d 99.9 5.1E-22 1.1E-26 175.7 12.4 125 3-136 26-172 (246)
99 TIGR01277 thiQ thiamine ABC tr 99.9 5.4E-22 1.2E-26 171.4 12.3 125 3-136 25-185 (213)
100 PRK11144 modC molybdate transp 99.9 3.7E-22 8E-27 185.2 11.9 125 3-136 25-185 (352)
101 PRK13541 cytochrome c biogenes 99.9 1.2E-21 2.6E-26 167.1 14.2 125 3-136 27-179 (195)
102 PRK11124 artP arginine transpo 99.9 6.7E-22 1.5E-26 173.9 12.9 125 3-136 29-197 (242)
103 TIGR03411 urea_trans_UrtD urea 99.9 7.9E-22 1.7E-26 173.4 13.3 135 3-151 29-209 (242)
104 PRK13637 cbiO cobalt transport 99.9 4.1E-22 9E-27 180.0 11.7 125 3-136 34-201 (287)
105 TIGR02142 modC_ABC molybdenum 99.9 4.3E-22 9.2E-27 184.9 12.0 125 3-136 24-188 (354)
106 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.1E-21 2.4E-26 172.0 13.8 125 3-136 28-189 (236)
107 PRK10584 putative ABC transpor 99.9 7.7E-22 1.7E-26 171.9 12.7 125 3-136 37-203 (228)
108 PRK10895 lipopolysaccharide AB 99.9 8.3E-22 1.8E-26 173.2 12.8 125 3-136 30-193 (241)
109 TIGR03771 anch_rpt_ABC anchore 99.9 7.5E-22 1.6E-26 171.9 12.4 125 3-136 7-169 (223)
110 cd03257 ABC_NikE_OppD_transpor 99.9 8E-22 1.7E-26 171.5 12.6 125 3-136 32-202 (228)
111 PRK13539 cytochrome c biogenes 99.9 1.4E-21 3.1E-26 168.2 14.0 125 3-136 29-183 (207)
112 cd03267 ABC_NatA_like Similar 99.9 1.1E-21 2.3E-26 172.3 12.8 125 3-136 48-210 (236)
113 COG0410 LivF ABC-type branched 99.9 7.4E-22 1.6E-26 169.9 11.3 129 3-136 30-193 (237)
114 PRK13643 cbiO cobalt transport 99.9 6.2E-22 1.3E-26 178.9 11.5 137 3-151 33-211 (288)
115 COG4586 ABC-type uncharacteriz 99.9 1.5E-22 3.2E-27 177.7 7.0 150 3-165 51-238 (325)
116 PRK10771 thiQ thiamine transpo 99.9 9.5E-22 2.1E-26 172.0 12.1 125 3-136 26-186 (232)
117 PRK13649 cbiO cobalt transport 99.9 7.7E-22 1.7E-26 177.4 11.7 126 3-136 34-201 (280)
118 PRK13634 cbiO cobalt transport 99.9 6.7E-22 1.4E-26 178.9 11.2 137 3-151 34-213 (290)
119 PRK10619 histidine/lysine/argi 99.9 1E-21 2.2E-26 174.5 12.2 131 3-136 32-208 (257)
120 PRK13639 cbiO cobalt transport 99.9 8.1E-22 1.8E-26 177.0 11.6 136 3-151 29-204 (275)
121 TIGR03410 urea_trans_UrtE urea 99.9 1.1E-21 2.4E-26 171.2 12.1 125 3-136 27-188 (230)
122 PRK11607 potG putrescine trans 99.9 1.4E-21 2.9E-26 182.8 13.5 125 3-136 46-206 (377)
123 PRK13548 hmuV hemin importer A 99.9 1.4E-21 2.9E-26 173.9 12.9 136 3-151 29-208 (258)
124 PRK13638 cbiO cobalt transport 99.9 7.3E-22 1.6E-26 176.8 11.1 125 3-136 28-192 (271)
125 PRK13650 cbiO cobalt transport 99.9 1.3E-21 2.8E-26 176.0 12.7 125 3-136 34-197 (279)
126 cd03260 ABC_PstB_phosphate_tra 99.9 1.4E-22 3.1E-27 176.5 6.2 130 3-136 27-196 (227)
127 TIGR03415 ABC_choXWV_ATP choli 99.9 1.6E-21 3.4E-26 182.4 13.5 136 3-151 51-232 (382)
128 PRK13631 cbiO cobalt transport 99.9 8.5E-23 1.8E-27 187.2 4.7 125 3-136 53-232 (320)
129 PRK14250 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 172.8 11.1 126 3-136 30-188 (241)
130 PRK13652 cbiO cobalt transport 99.9 1.6E-21 3.5E-26 175.2 12.4 136 3-151 31-205 (277)
131 PRK15112 antimicrobial peptide 99.9 1.3E-21 2.8E-26 174.9 11.7 142 3-151 40-217 (267)
132 PRK11614 livF leucine/isoleuci 99.9 1.4E-21 3E-26 171.4 11.6 136 3-151 32-204 (237)
133 PRK13636 cbiO cobalt transport 99.9 1E-21 2.2E-26 177.1 10.9 136 3-151 33-209 (283)
134 TIGR03005 ectoine_ehuA ectoine 99.9 1.7E-21 3.6E-26 172.5 12.0 125 3-136 27-203 (252)
135 PRK10762 D-ribose transporter 99.9 1.4E-21 3E-26 189.1 12.4 125 3-136 31-197 (501)
136 PRK10575 iron-hydroxamate tran 99.9 1.5E-21 3.2E-26 174.3 11.6 136 3-151 38-215 (265)
137 COG1117 PstB ABC-type phosphat 99.9 2.2E-21 4.9E-26 165.1 11.9 137 3-147 34-211 (253)
138 TIGR02769 nickel_nikE nickel i 99.9 3.1E-21 6.8E-26 172.2 13.5 137 3-151 38-218 (265)
139 COG4148 ModC ABC-type molybdat 99.9 1.4E-22 3.1E-27 178.4 4.7 164 3-179 25-224 (352)
140 TIGR01187 potA spermidine/putr 99.9 1.5E-21 3.2E-26 179.4 11.5 121 7-136 1-157 (325)
141 PRK11231 fecE iron-dicitrate t 99.9 2.3E-21 4.9E-26 172.0 12.1 136 3-151 29-205 (255)
142 PRK15439 autoinducer 2 ABC tra 99.9 2.7E-21 5.8E-26 187.5 13.5 125 3-136 38-196 (510)
143 PRK13635 cbiO cobalt transport 99.9 3.2E-21 6.9E-26 173.5 13.0 125 3-136 34-197 (279)
144 TIGR02770 nickel_nikD nickel i 99.9 3E-21 6.6E-26 168.7 12.5 138 3-150 13-192 (230)
145 cd03214 ABC_Iron-Siderophores_ 99.9 1E-21 2.2E-26 165.6 9.1 125 3-136 26-154 (180)
146 PRK13546 teichoic acids export 99.9 3.5E-21 7.5E-26 172.1 12.8 125 3-136 51-199 (264)
147 COG3845 ABC-type uncharacteriz 99.9 2.1E-21 4.6E-26 182.0 11.9 139 3-154 31-210 (501)
148 TIGR00972 3a0107s01c2 phosphat 99.9 2.4E-21 5.2E-26 171.0 11.6 139 3-151 28-210 (247)
149 TIGR02982 heterocyst_DevA ABC 99.9 4E-21 8.6E-26 166.8 12.8 125 3-136 32-198 (220)
150 TIGR02324 CP_lyasePhnL phospho 99.9 3E-21 6.4E-26 167.8 12.0 126 3-136 35-205 (224)
151 PRK13645 cbiO cobalt transport 99.9 1.8E-21 4E-26 175.8 10.8 125 3-136 38-207 (289)
152 PRK13632 cbiO cobalt transport 99.9 3.2E-21 7E-26 172.7 12.3 125 3-136 36-199 (271)
153 PRK15079 oligopeptide ABC tran 99.9 3.2E-21 7E-26 177.5 12.5 136 3-150 48-228 (331)
154 COG1129 MglA ABC-type sugar tr 99.9 2.3E-21 4.9E-26 184.3 11.8 137 3-152 35-213 (500)
155 PRK10253 iron-enterobactin tra 99.9 3.1E-21 6.8E-26 172.2 12.0 136 3-151 34-211 (265)
156 cd03299 ABC_ModC_like Archeal 99.9 3.8E-21 8.3E-26 168.7 12.3 125 3-136 26-186 (235)
157 PRK13644 cbiO cobalt transport 99.9 4.2E-21 9.2E-26 172.3 12.9 125 3-136 29-192 (274)
158 TIGR03873 F420-0_ABC_ATP propo 99.9 3.7E-21 8E-26 170.8 12.3 136 3-151 28-204 (256)
159 COG4598 HisP ABC-type histidin 99.9 7.8E-22 1.7E-26 164.1 7.3 129 4-136 34-208 (256)
160 TIGR00968 3a0106s01 sulfate AB 99.9 4.3E-21 9.4E-26 168.5 12.4 136 3-151 27-198 (237)
161 cd03300 ABC_PotA_N PotA is an 99.9 5.4E-21 1.2E-25 167.3 12.8 125 3-136 27-187 (232)
162 COG4175 ProV ABC-type proline/ 99.9 7.5E-22 1.6E-26 176.3 7.5 125 3-136 55-221 (386)
163 PRK09700 D-allose transporter 99.9 3.6E-21 7.8E-26 186.5 12.5 125 3-136 32-201 (510)
164 PRK11308 dppF dipeptide transp 99.9 4.8E-22 1E-26 182.8 6.0 126 3-136 42-211 (327)
165 PRK10938 putative molybdenum t 99.9 3.3E-21 7.1E-26 185.9 12.1 125 3-136 30-191 (490)
166 PRK09544 znuC high-affinity zi 99.9 5.1E-21 1.1E-25 169.8 11.9 136 3-151 31-188 (251)
167 PRK13648 cbiO cobalt transport 99.9 7.9E-21 1.7E-25 169.9 13.2 125 3-136 36-199 (269)
168 PRK09700 D-allose transporter 99.9 4.2E-21 9.2E-26 186.0 12.4 136 3-151 290-476 (510)
169 PRK11701 phnK phosphonate C-P 99.8 7.3E-21 1.6E-25 169.0 12.8 136 3-150 33-218 (258)
170 cd03215 ABC_Carb_Monos_II This 99.8 1.1E-20 2.4E-25 159.5 13.1 126 3-151 27-171 (182)
171 TIGR01978 sufC FeS assembly AT 99.8 8.5E-21 1.8E-25 166.7 12.6 130 3-136 27-200 (243)
172 PRK15056 manganese/iron transp 99.8 4.1E-21 8.8E-26 172.1 10.7 125 3-136 34-198 (272)
173 PRK13549 xylose transporter AT 99.8 7.4E-21 1.6E-25 184.2 13.3 125 3-136 32-199 (506)
174 PRK10247 putative ABC transpor 99.8 1.2E-20 2.6E-25 164.5 13.2 126 3-136 34-194 (225)
175 cd03234 ABCG_White The White s 99.8 1.3E-20 2.8E-25 164.2 13.4 125 3-136 34-199 (226)
176 PRK10982 galactose/methyl gala 99.8 5.8E-21 1.3E-25 184.3 12.3 125 3-136 25-190 (491)
177 cd03230 ABC_DR_subfamily_A Thi 99.8 8.6E-21 1.9E-25 159.0 11.4 111 3-136 27-151 (173)
178 COG4181 Predicted ABC-type tra 99.8 1.2E-20 2.6E-25 155.8 11.8 125 4-137 38-204 (228)
179 PRK13633 cobalt transporter AT 99.8 8.4E-21 1.8E-25 170.8 11.9 125 3-136 37-201 (280)
180 TIGR02323 CP_lyasePhnK phospho 99.8 1.5E-20 3.2E-25 166.4 13.2 126 3-136 30-205 (253)
181 PRK09984 phosphonate/organopho 99.8 1E-20 2.3E-25 168.4 12.3 125 3-136 31-209 (262)
182 PRK11288 araG L-arabinose tran 99.8 7.9E-21 1.7E-25 183.8 12.3 130 3-136 31-196 (501)
183 PRK13545 tagH teichoic acids e 99.8 8.4E-21 1.8E-25 182.2 12.1 125 3-136 51-199 (549)
184 cd03229 ABC_Class3 This class 99.8 6.9E-21 1.5E-25 160.3 10.0 113 3-136 27-157 (178)
185 PRK13642 cbiO cobalt transport 99.8 1.4E-20 3E-25 169.1 12.6 125 3-136 34-197 (277)
186 PRK10418 nikD nickel transport 99.8 1.8E-20 3.9E-25 166.2 13.2 128 3-136 30-197 (254)
187 PRK15439 autoinducer 2 ABC tra 99.8 9.4E-21 2E-25 183.7 12.3 136 3-151 290-470 (510)
188 PRK13640 cbiO cobalt transport 99.8 1.4E-20 3E-25 169.6 12.5 125 3-136 34-200 (282)
189 PRK10762 D-ribose transporter 99.8 1.2E-20 2.7E-25 182.5 12.6 136 3-151 279-462 (501)
190 PRK11288 araG L-arabinose tran 99.8 1.2E-20 2.6E-25 182.5 12.5 136 3-151 280-463 (501)
191 PRK13549 xylose transporter AT 99.8 1.2E-20 2.6E-25 182.8 12.2 137 3-151 289-472 (506)
192 cd03251 ABCC_MsbA MsbA is an e 99.8 1.2E-20 2.6E-25 164.9 11.1 124 3-136 29-193 (234)
193 PRK13547 hmuV hemin importer A 99.8 1.8E-20 3.9E-25 168.2 12.0 125 3-136 28-211 (272)
194 PRK14247 phosphate ABC transpo 99.8 3E-20 6.4E-25 164.2 13.0 128 3-136 30-201 (250)
195 PRK10419 nikE nickel transport 99.8 2.5E-20 5.4E-25 166.7 12.6 126 3-136 39-208 (268)
196 PRK14273 phosphate ABC transpo 99.8 1.6E-20 3.4E-25 166.4 11.0 128 3-136 34-205 (254)
197 PRK14242 phosphate transporter 99.8 1.7E-20 3.7E-25 166.0 11.1 128 3-136 33-204 (253)
198 PRK11022 dppD dipeptide transp 99.8 3.6E-21 7.8E-26 176.9 6.7 128 3-136 34-210 (326)
199 COG1123 ATPase components of v 99.8 3.6E-21 7.9E-26 184.2 7.0 152 3-181 318-512 (539)
200 TIGR02633 xylG D-xylose ABC tr 99.8 1.9E-20 4.1E-25 181.0 12.1 137 3-151 287-470 (500)
201 PRK14267 phosphate ABC transpo 99.8 3E-20 6.6E-25 164.4 12.4 128 3-136 31-204 (253)
202 PRK09473 oppD oligopeptide tra 99.8 2.7E-20 5.8E-25 171.3 12.5 128 3-136 43-218 (330)
203 cd03236 ABC_RNaseL_inhibitor_d 99.8 2.7E-20 5.9E-25 165.5 12.1 125 3-136 27-195 (255)
204 cd03246 ABCC_Protease_Secretio 99.8 3.4E-20 7.4E-25 155.3 11.9 110 3-136 29-152 (173)
205 PRK03695 vitamin B12-transport 99.8 3.2E-20 6.8E-25 164.2 12.2 137 3-151 23-200 (248)
206 PRK14268 phosphate ABC transpo 99.8 2.6E-20 5.6E-25 165.6 11.5 139 3-151 39-220 (258)
207 cd03252 ABCC_Hemolysin The ABC 99.8 2.6E-20 5.6E-25 163.3 11.3 130 3-136 29-193 (237)
208 cd03248 ABCC_TAP TAP, the Tran 99.8 2.7E-20 5.8E-25 162.0 11.2 124 3-136 41-205 (226)
209 PRK14241 phosphate transporter 99.8 4.3E-20 9.4E-25 164.0 12.7 139 3-151 31-214 (258)
210 PRK10261 glutathione transport 99.8 2E-20 4.3E-25 185.4 11.6 137 3-151 351-531 (623)
211 cd03245 ABCC_bacteriocin_expor 99.8 3.5E-20 7.5E-25 160.6 11.6 130 3-136 31-195 (220)
212 PRK10744 pstB phosphate transp 99.8 3.1E-20 6.8E-25 165.2 11.5 128 3-136 40-211 (260)
213 cd03233 ABC_PDR_domain1 The pl 99.8 5.9E-20 1.3E-24 157.7 12.6 123 3-136 34-175 (202)
214 TIGR02633 xylG D-xylose ABC tr 99.8 4.2E-20 9.1E-25 178.6 12.8 131 3-136 28-197 (500)
215 PRK15093 antimicrobial peptide 99.8 4.9E-20 1.1E-24 169.6 12.6 139 3-151 34-226 (330)
216 cd03213 ABCG_EPDR ABCG transpo 99.8 1.4E-19 3E-24 154.5 14.1 118 3-136 36-167 (194)
217 cd03254 ABCC_Glucan_exporter_l 99.8 2.7E-20 5.8E-25 162.2 9.8 130 3-136 30-194 (229)
218 PRK14259 phosphate ABC transpo 99.8 4.7E-20 1E-24 165.0 11.6 139 3-151 40-220 (269)
219 PRK14235 phosphate transporter 99.8 5E-20 1.1E-24 164.6 11.6 128 3-136 46-218 (267)
220 cd03290 ABCC_SUR1_N The SUR do 99.8 7.2E-20 1.6E-24 158.6 12.2 132 3-136 28-198 (218)
221 cd03216 ABC_Carb_Monos_I This 99.8 4.9E-20 1.1E-24 153.1 10.7 111 3-136 27-138 (163)
222 PRK15134 microcin C ABC transp 99.8 4.8E-20 1E-24 179.4 12.3 128 3-136 36-213 (529)
223 TIGR03269 met_CoM_red_A2 methy 99.8 6.5E-20 1.4E-24 178.1 13.1 141 3-151 311-495 (520)
224 PRK14251 phosphate ABC transpo 99.8 5.7E-20 1.2E-24 162.5 11.4 139 3-151 31-213 (251)
225 cd03253 ABCC_ATM1_transporter 99.8 4.8E-20 1E-24 161.3 10.8 130 3-136 28-192 (236)
226 COG1134 TagH ABC-type polysacc 99.8 1.6E-20 3.5E-25 162.9 7.7 139 3-152 54-215 (249)
227 PRK15134 microcin C ABC transp 99.8 6.4E-21 1.4E-25 185.6 5.8 136 3-151 313-493 (529)
228 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.7E-20 1.5E-24 157.1 11.4 122 3-136 27-160 (200)
229 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 5.1E-20 1.1E-24 161.5 10.8 130 3-136 30-194 (238)
230 PRK15177 Vi polysaccharide exp 99.8 1.1E-19 2.5E-24 157.3 12.7 134 3-151 14-170 (213)
231 PRK13409 putative ATPase RIL; 99.8 5.8E-20 1.2E-24 180.8 12.2 124 3-136 366-510 (590)
232 cd03222 ABC_RNaseL_inhibitor T 99.8 6.2E-20 1.3E-24 154.7 10.7 100 3-136 26-128 (177)
233 cd03232 ABC_PDR_domain2 The pl 99.8 2.3E-19 5E-24 152.8 14.3 118 3-136 34-164 (192)
234 PRK10261 glutathione transport 99.8 1.2E-20 2.5E-25 187.1 7.1 128 3-136 43-225 (623)
235 PRK14256 phosphate ABC transpo 99.8 7.8E-20 1.7E-24 161.8 11.6 139 3-151 31-214 (252)
236 TIGR03269 met_CoM_red_A2 methy 99.8 7.8E-20 1.7E-24 177.6 12.5 125 3-136 27-225 (520)
237 PRK13409 putative ATPase RIL; 99.8 4E-20 8.6E-25 182.0 10.5 124 3-136 100-267 (590)
238 TIGR01257 rim_protein retinal- 99.8 6.5E-20 1.4E-24 197.9 12.9 138 3-153 1966-2139(2272)
239 PRK14270 phosphate ABC transpo 99.8 9.2E-20 2E-24 161.3 11.6 128 3-136 31-202 (251)
240 cd03250 ABCC_MRP_domain1 Domai 99.8 1.1E-19 2.3E-24 155.9 11.7 131 3-136 32-184 (204)
241 PRK10982 galactose/methyl gala 99.8 7.1E-20 1.5E-24 176.7 11.8 137 3-151 275-458 (491)
242 PRK14269 phosphate ABC transpo 99.8 1.3E-19 2.9E-24 159.9 12.5 128 3-136 29-197 (246)
243 PRK14262 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 160.5 12.0 128 3-136 30-201 (250)
244 COG4525 TauB ABC-type taurine 99.8 1E-19 2.2E-24 153.2 10.9 125 4-136 33-189 (259)
245 PRK14263 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 161.8 11.9 139 3-151 35-215 (261)
246 PRK14245 phosphate ABC transpo 99.8 1.4E-19 3E-24 160.0 12.1 128 3-136 30-201 (250)
247 CHL00131 ycf16 sulfate ABC tra 99.8 2.4E-19 5.2E-24 158.5 13.5 131 3-136 34-207 (252)
248 COG1119 ModF ABC-type molybden 99.8 2.2E-19 4.7E-24 155.9 12.6 130 5-147 60-236 (257)
249 PRK14237 phosphate transporter 99.8 1.2E-19 2.6E-24 162.2 11.5 139 3-151 47-229 (267)
250 PRK14249 phosphate ABC transpo 99.8 1.5E-19 3.1E-24 160.0 11.7 138 3-150 31-212 (251)
251 PRK14274 phosphate ABC transpo 99.8 1.4E-19 3E-24 160.9 11.6 128 3-136 39-210 (259)
252 cd03228 ABCC_MRP_Like The MRP 99.8 2E-19 4.3E-24 150.5 11.8 114 3-136 29-151 (171)
253 PRK14248 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 162.4 10.9 128 3-136 48-219 (268)
254 COG4133 CcmA ABC-type transpor 99.8 3.1E-19 6.7E-24 149.3 12.7 127 3-133 29-183 (209)
255 PRK14244 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 159.8 11.7 128 3-136 32-204 (251)
256 cd03247 ABCC_cytochrome_bd The 99.8 1.2E-19 2.7E-24 152.5 10.5 112 3-136 29-153 (178)
257 PRK14240 phosphate transporter 99.8 1.5E-19 3.3E-24 159.6 11.5 128 3-136 30-201 (250)
258 PRK14238 phosphate transporter 99.8 1.1E-19 2.4E-24 162.9 10.4 139 3-151 51-233 (271)
259 PRK14239 phosphate transporter 99.8 1.9E-19 4.1E-24 159.1 11.7 128 3-136 32-203 (252)
260 PRK14254 phosphate ABC transpo 99.8 2.8E-19 6.1E-24 161.4 13.0 128 3-136 66-235 (285)
261 TIGR01257 rim_protein retinal- 99.8 2.1E-19 4.6E-24 193.9 14.1 136 3-152 957-1128(2272)
262 cd03244 ABCC_MRP_domain2 Domai 99.8 1.2E-19 2.6E-24 157.3 10.0 130 3-136 31-194 (221)
263 PLN03211 ABC transporter G-25; 99.8 1.1E-19 2.3E-24 181.0 10.3 131 3-136 95-262 (659)
264 PRK14272 phosphate ABC transpo 99.8 3.1E-19 6.7E-24 157.8 12.1 128 3-136 31-203 (252)
265 PRK14275 phosphate ABC transpo 99.8 2.5E-19 5.3E-24 161.8 11.5 128 3-136 66-237 (286)
266 PRK14258 phosphate ABC transpo 99.8 4.7E-19 1E-23 157.8 12.9 140 3-151 34-218 (261)
267 PRK09580 sufC cysteine desulfu 99.8 5.7E-19 1.2E-23 155.7 13.0 131 3-136 28-201 (248)
268 PRK14260 phosphate ABC transpo 99.8 4.3E-19 9.2E-24 157.8 12.3 139 3-151 34-216 (259)
269 PRK14236 phosphate transporter 99.8 3.7E-19 8.1E-24 159.4 11.8 128 3-136 52-223 (272)
270 PRK14253 phosphate ABC transpo 99.8 5.7E-19 1.2E-23 155.9 12.7 139 3-151 30-211 (249)
271 PRK14243 phosphate transporter 99.8 2.8E-19 6.2E-24 159.5 10.8 139 3-151 37-217 (264)
272 PRK14265 phosphate ABC transpo 99.8 3.5E-19 7.7E-24 159.8 11.3 138 3-150 47-226 (274)
273 TIGR02868 CydC thiol reductant 99.8 2.6E-19 5.7E-24 174.1 11.1 130 3-136 362-525 (529)
274 PRK15064 ABC transporter ATP-b 99.8 4E-19 8.6E-24 173.1 12.2 127 3-136 28-208 (530)
275 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.1E-18 2.4E-23 150.0 13.5 125 3-136 35-180 (207)
276 PRK14246 phosphate ABC transpo 99.8 7.8E-19 1.7E-23 156.2 12.9 128 3-136 37-208 (257)
277 COG4608 AppF ABC-type oligopep 99.8 1.2E-19 2.5E-24 160.1 7.4 123 3-136 40-166 (268)
278 PRK14255 phosphate ABC transpo 99.8 7.1E-19 1.5E-23 155.6 12.2 128 3-136 32-203 (252)
279 PRK14271 phosphate ABC transpo 99.8 9.2E-19 2E-23 157.3 12.6 128 3-136 48-218 (276)
280 COG2274 SunT ABC-type bacterio 99.8 3.1E-19 6.8E-24 177.8 10.4 129 4-136 501-664 (709)
281 PRK11176 lipid transporter ATP 99.8 4.5E-19 9.7E-24 174.3 11.2 129 3-136 370-535 (582)
282 PRK10938 putative molybdenum t 99.8 7.3E-19 1.6E-23 169.6 12.4 125 3-136 287-458 (490)
283 cd03223 ABCD_peroxisomal_ALDP 99.8 1.3E-18 2.9E-23 145.0 12.2 109 3-136 28-144 (166)
284 PRK14261 phosphate ABC transpo 99.8 9.4E-19 2E-23 155.0 11.8 128 3-136 33-204 (253)
285 PRK14266 phosphate ABC transpo 99.8 7.5E-19 1.6E-23 155.2 10.8 128 3-136 30-201 (250)
286 PRK14252 phosphate ABC transpo 99.8 1.1E-18 2.5E-23 155.6 12.0 128 3-136 43-216 (265)
287 COG1101 PhnK ABC-type uncharac 99.8 2.8E-19 6.1E-24 152.5 7.6 150 4-160 34-225 (263)
288 PRK10790 putative multidrug tr 99.8 5.7E-19 1.2E-23 174.0 10.9 130 3-136 368-531 (592)
289 COG4988 CydD ABC-type transpor 99.8 1.1E-18 2.4E-23 166.8 12.5 155 3-181 348-536 (559)
290 PRK15064 ABC transporter ATP-b 99.8 6.5E-19 1.4E-23 171.6 11.1 123 3-136 346-491 (530)
291 cd03238 ABC_UvrA The excision 99.8 1.6E-18 3.4E-23 146.1 12.0 113 3-136 22-145 (176)
292 PRK14264 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 159.0 11.7 128 3-136 72-255 (305)
293 PRK14257 phosphate ABC transpo 99.8 1.5E-18 3.3E-23 159.7 12.4 128 3-136 109-280 (329)
294 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-18 2.5E-23 156.7 11.2 123 3-136 31-193 (275)
295 PRK11174 cysteine/glutathione 99.8 1.2E-18 2.7E-23 171.4 12.1 129 3-136 377-540 (588)
296 TIGR02857 CydD thiol reductant 99.8 1.5E-18 3.3E-23 168.8 12.4 129 3-136 349-513 (529)
297 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1.2E-19 2.5E-24 182.4 4.4 128 3-136 506-668 (710)
298 cd03288 ABCC_SUR2 The SUR doma 99.8 1.8E-18 3.9E-23 153.7 11.5 130 3-136 48-211 (257)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.4E-18 3.1E-23 141.6 9.5 96 3-136 27-123 (144)
300 COG4161 ArtP ABC-type arginine 99.8 1.8E-18 4E-23 141.8 10.0 129 4-136 30-197 (242)
301 COG0444 DppD ABC-type dipeptid 99.8 3.8E-19 8.2E-24 160.0 6.5 154 3-181 32-236 (316)
302 PRK10535 macrolide transporter 99.8 2E-18 4.4E-23 171.8 12.3 125 3-136 35-200 (648)
303 PRK11819 putative ABC transpor 99.8 2.2E-18 4.7E-23 168.9 12.3 121 3-136 34-216 (556)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.3E-18 5E-23 168.5 12.2 122 3-136 349-496 (552)
305 PRK11147 ABC transporter ATPas 99.8 2.2E-18 4.8E-23 171.2 12.2 122 3-136 346-493 (635)
306 COG4619 ABC-type uncharacteriz 99.8 2.2E-18 4.9E-23 142.0 9.9 126 4-137 31-191 (223)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 3.1E-18 6.7E-23 167.7 12.5 121 3-136 32-214 (552)
308 PRK10636 putative ABC transpor 99.8 2.3E-18 5E-23 171.2 11.7 123 3-136 339-483 (638)
309 cd03291 ABCC_CFTR1 The CFTR su 99.8 3E-18 6.4E-23 154.6 11.4 130 3-136 64-215 (282)
310 PRK11819 putative ABC transpor 99.8 2.4E-18 5.2E-23 168.6 11.4 132 3-150 351-508 (556)
311 TIGR01842 type_I_sec_PrtD type 99.8 4.9E-18 1.1E-22 165.9 13.4 130 3-136 345-510 (544)
312 PRK13657 cyclic beta-1,2-gluca 99.8 3.1E-18 6.8E-23 168.7 12.1 130 3-136 362-526 (588)
313 TIGR02203 MsbA_lipidA lipid A 99.8 2.5E-18 5.4E-23 168.5 11.2 130 3-136 359-524 (571)
314 cd00267 ABC_ATPase ABC (ATP-bi 99.8 3.9E-18 8.5E-23 140.4 10.7 110 3-136 26-136 (157)
315 TIGR00955 3a01204 The Eye Pigm 99.8 1.8E-18 3.9E-23 171.4 10.2 131 3-136 52-222 (617)
316 COG4674 Uncharacterized ABC-ty 99.8 1.6E-18 3.4E-23 146.0 8.3 149 4-181 33-228 (249)
317 COG0488 Uup ATPase components 99.8 3.3E-18 7.2E-23 165.6 11.7 133 4-146 31-215 (530)
318 TIGR03375 type_I_sec_LssB type 99.8 2.7E-18 5.8E-23 172.2 11.4 130 3-136 492-656 (694)
319 PRK11160 cysteine/glutathione 99.8 3.6E-18 7.8E-23 167.9 12.0 129 3-136 367-530 (574)
320 KOG0059 Lipid exporter ABCA1 a 99.8 2.1E-18 4.6E-23 176.7 10.7 147 3-162 592-776 (885)
321 COG4172 ABC-type uncharacteriz 99.8 7.5E-19 1.6E-23 161.5 6.4 155 4-181 315-509 (534)
322 COG1123 ATPase components of v 99.8 9.6E-19 2.1E-23 167.6 6.9 127 3-136 36-211 (539)
323 TIGR01194 cyc_pep_trnsptr cycl 99.8 5.5E-18 1.2E-22 166.0 12.2 131 3-136 369-527 (555)
324 PRK10789 putative multidrug tr 99.7 6.6E-18 1.4E-22 165.9 12.4 129 3-136 342-506 (569)
325 KOG0061 Transporter, ABC super 99.7 1.1E-17 2.4E-22 165.2 13.7 125 3-136 57-226 (613)
326 TIGR02204 MsbA_rel ABC transpo 99.7 5.7E-18 1.2E-22 166.2 11.6 129 3-136 367-531 (576)
327 COG1132 MdlB ABC-type multidru 99.7 8.5E-18 1.9E-22 164.9 12.6 130 3-136 356-520 (567)
328 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 8E-18 1.7E-22 168.6 12.5 128 3-136 480-641 (686)
329 PRK10636 putative ABC transpor 99.7 8.4E-18 1.8E-22 167.2 12.5 123 3-136 28-202 (638)
330 PRK10522 multidrug transporter 99.7 1.4E-17 3E-22 162.8 12.8 132 3-136 350-506 (547)
331 TIGR01193 bacteriocin_ABC ABC- 99.7 7.2E-18 1.6E-22 169.4 10.7 129 3-136 501-665 (708)
332 TIGR01192 chvA glucan exporter 99.7 1.3E-17 2.9E-22 164.2 12.4 129 3-136 362-526 (585)
333 TIGR01846 type_I_sec_HlyB type 99.7 1.1E-17 2.3E-22 167.9 11.5 130 3-136 484-648 (694)
334 PF00005 ABC_tran: ABC transpo 99.7 2.4E-18 5.1E-23 138.0 5.3 103 3-109 12-137 (137)
335 TIGR00956 3a01205 Pleiotropic 99.7 1.5E-17 3.3E-22 177.1 13.0 131 3-136 790-958 (1394)
336 KOG0057 Mitochondrial Fe/S clu 99.7 1.2E-17 2.6E-22 158.4 10.7 128 4-136 380-542 (591)
337 PRK11147 ABC transporter ATPas 99.7 2E-17 4.4E-22 164.4 12.9 124 3-136 30-209 (635)
338 KOG0055 Multidrug/pheromone ex 99.7 1.7E-17 3.7E-22 169.8 11.9 128 3-137 380-546 (1228)
339 TIGR00958 3a01208 Conjugate Tr 99.7 1.7E-17 3.7E-22 166.9 11.1 127 3-136 508-670 (711)
340 COG4167 SapF ABC-type antimicr 99.7 5.8E-17 1.2E-21 135.5 11.9 157 3-181 40-232 (267)
341 PLN03140 ABC transporter G fam 99.7 3.8E-17 8.2E-22 174.2 13.5 131 3-136 907-1075(1470)
342 COG0396 sufC Cysteine desulfur 99.7 1.2E-16 2.6E-21 137.6 13.2 126 3-136 31-200 (251)
343 KOG0058 Peptide exporter, ABC 99.7 6.6E-17 1.4E-21 157.7 12.2 151 3-181 495-684 (716)
344 COG4987 CydC ABC-type transpor 99.7 4.7E-17 1E-21 154.2 10.8 134 4-145 366-534 (573)
345 PLN03073 ABC transporter F fam 99.7 4E-17 8.7E-22 163.8 10.6 119 3-136 536-680 (718)
346 PTZ00265 multidrug resistance 99.7 4.1E-17 8.9E-22 174.3 11.2 127 3-136 1195-1415(1466)
347 TIGR00954 3a01203 Peroxysomal 99.7 1.1E-16 2.3E-21 159.8 12.7 127 3-136 479-635 (659)
348 COG4618 ArpD ABC-type protease 99.7 7.7E-17 1.7E-21 151.8 10.8 127 3-136 363-528 (580)
349 PLN03232 ABC transporter C fam 99.7 1E-16 2.2E-21 172.1 12.9 129 3-136 1263-1426(1495)
350 PTZ00265 multidrug resistance 99.7 8.5E-17 1.8E-21 171.9 10.8 131 3-136 412-636 (1466)
351 COG0488 Uup ATPase components 99.7 2.2E-16 4.7E-21 153.0 11.4 129 4-144 350-499 (530)
352 TIGR00956 3a01205 Pleiotropic 99.7 2.3E-16 5.1E-21 168.1 12.7 130 3-136 88-266 (1394)
353 PLN03140 ABC transporter G fam 99.7 1E-16 2.3E-21 170.8 9.4 130 3-136 192-393 (1470)
354 PLN03130 ABC transporter C fam 99.7 1.7E-16 3.8E-21 170.9 10.9 129 3-136 1266-1429(1622)
355 COG4136 ABC-type uncharacteriz 99.7 4.3E-16 9.3E-21 126.5 9.9 127 3-137 29-192 (213)
356 COG4778 PhnL ABC-type phosphon 99.7 2.6E-16 5.6E-21 130.1 7.7 132 3-137 38-209 (235)
357 PTZ00243 ABC transporter; Prov 99.7 4.2E-16 9.1E-21 167.6 11.5 129 3-136 1337-1501(1560)
358 TIGR00957 MRP_assoc_pro multi 99.6 5.9E-16 1.3E-20 166.4 11.6 129 3-136 1313-1476(1522)
359 PLN03073 ABC transporter F fam 99.6 1.4E-15 3E-20 152.7 11.9 123 3-136 204-397 (718)
360 cd03272 ABC_SMC3_euk Eukaryoti 99.6 3E-15 6.6E-20 131.5 12.3 130 3-137 24-218 (243)
361 cd03278 ABC_SMC_barmotin Barmo 99.6 6.5E-16 1.4E-20 132.4 7.5 126 4-136 24-172 (197)
362 cd03270 ABC_UvrA_I The excisio 99.6 3.1E-15 6.8E-20 130.7 11.4 69 60-136 118-195 (226)
363 TIGR01271 CFTR_protein cystic 99.6 1.9E-15 4.2E-20 162.1 11.2 130 3-136 453-604 (1490)
364 COG4615 PvdE ABC-type sideroph 99.6 5.6E-15 1.2E-19 135.9 12.1 140 3-145 350-513 (546)
365 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2E-15 4.4E-20 133.7 8.3 130 3-136 26-225 (251)
366 PLN03130 ABC transporter C fam 99.6 3E-15 6.5E-20 161.4 11.0 131 3-136 644-796 (1622)
367 COG4107 PhnK ABC-type phosphon 99.6 4.3E-15 9.3E-20 123.5 9.5 126 3-136 33-208 (258)
368 TIGR01271 CFTR_protein cystic 99.6 3.5E-15 7.7E-20 160.1 11.5 128 4-136 1247-1408(1490)
369 COG1245 Predicted ATPase, RNas 99.6 3.6E-15 7.8E-20 139.1 9.8 128 3-141 368-516 (591)
370 cd03240 ABC_Rad50 The catalyti 99.6 1.2E-14 2.5E-19 125.3 12.1 127 4-136 24-179 (204)
371 KOG0055 Multidrug/pheromone ex 99.6 5.8E-15 1.2E-19 151.5 11.6 155 3-181 1017-1206(1228)
372 PTZ00243 ABC transporter; Prov 99.6 6.8E-15 1.5E-19 158.4 11.4 129 3-136 687-838 (1560)
373 cd03279 ABC_sbcCD SbcCD and ot 99.6 7.2E-15 1.6E-19 127.2 8.6 49 87-136 132-189 (213)
374 PLN03232 ABC transporter C fam 99.6 9.9E-15 2.1E-19 156.9 11.5 131 3-136 644-796 (1495)
375 TIGR00957 MRP_assoc_pro multi 99.6 1.1E-14 2.5E-19 156.6 11.6 130 3-136 665-818 (1522)
376 KOG0062 ATPase component of AB 99.6 1.1E-14 2.3E-19 137.5 8.9 133 5-151 109-265 (582)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.5 2.3E-15 5.1E-20 130.4 3.2 48 87-136 136-186 (212)
378 KOG0065 Pleiotropic drug resis 99.5 6.9E-15 1.5E-19 151.2 6.6 125 3-136 818-986 (1391)
379 COG4172 ABC-type uncharacteriz 99.5 7.2E-14 1.6E-18 128.9 12.2 154 3-181 37-240 (534)
380 cd03275 ABC_SMC1_euk Eukaryoti 99.5 4E-14 8.8E-19 125.2 8.9 132 4-136 24-215 (247)
381 COG4138 BtuD ABC-type cobalami 99.5 4.2E-14 9.2E-19 117.6 8.2 126 3-136 26-188 (248)
382 KOG0056 Heavy metal exporter H 99.5 5.8E-14 1.3E-18 132.1 10.1 150 3-181 565-754 (790)
383 KOG0927 Predicted transporter 99.5 6.4E-14 1.4E-18 133.0 9.7 121 5-136 419-562 (614)
384 COG1245 Predicted ATPase, RNas 99.5 1.1E-13 2.5E-18 129.2 10.1 122 3-136 101-269 (591)
385 cd03271 ABC_UvrA_II The excisi 99.5 5.5E-13 1.2E-17 119.0 13.6 70 59-136 149-228 (261)
386 COG5265 ATM1 ABC-type transpor 99.4 4.5E-13 9.8E-18 124.2 9.8 132 3-137 290-456 (497)
387 cd03283 ABC_MutS-like MutS-lik 99.4 1.7E-13 3.7E-18 117.6 6.5 110 4-136 27-144 (199)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.9E-12 4.2E-17 111.0 12.0 39 87-128 118-161 (198)
389 cd03280 ABC_MutS2 MutS2 homolo 99.4 5.5E-13 1.2E-17 114.3 8.4 47 87-136 100-147 (200)
390 COG4178 ABC-type uncharacteriz 99.4 2E-12 4.3E-17 125.8 11.2 128 5-136 422-570 (604)
391 KOG0054 Multidrug resistance-a 99.4 1.7E-12 3.7E-17 135.9 10.2 152 4-179 1168-1353(1381)
392 COG1129 MglA ABC-type sugar tr 99.4 8E-13 1.7E-17 126.2 6.8 131 3-136 286-457 (500)
393 KOG0054 Multidrug resistance-a 99.4 3.4E-12 7.4E-17 133.7 11.7 131 3-136 548-699 (1381)
394 KOG0066 eIF2-interacting prote 99.3 8.7E-12 1.9E-16 116.3 10.1 126 3-136 614-757 (807)
395 cd03243 ABC_MutS_homologs The 99.3 5.7E-12 1.2E-16 108.1 8.2 113 4-136 31-147 (202)
396 smart00534 MUTSac ATPase domai 99.3 2.2E-12 4.7E-17 109.4 5.3 113 5-136 2-118 (185)
397 KOG0927 Predicted transporter 99.3 3E-11 6.5E-16 115.0 11.9 37 87-126 230-267 (614)
398 KOG2355 Predicted ABC-type tra 99.2 4.7E-11 1E-15 101.9 9.9 130 5-141 43-210 (291)
399 COG4170 SapD ABC-type antimicr 99.2 4.3E-11 9.3E-16 102.5 9.3 140 3-152 34-227 (330)
400 cd03227 ABC_Class2 ABC-type Cl 99.2 5.5E-11 1.2E-15 98.6 9.0 111 4-136 23-137 (162)
401 cd03239 ABC_SMC_head The struc 99.2 6.7E-11 1.4E-15 99.8 9.5 49 87-136 103-154 (178)
402 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.4E-11 9.6E-16 103.7 8.7 107 3-129 30-140 (213)
403 TIGR02858 spore_III_AA stage I 99.2 1.7E-10 3.7E-15 103.4 11.3 39 3-41 112-150 (270)
404 cd03282 ABC_MSH4_euk MutS4 hom 99.2 5.9E-11 1.3E-15 102.3 7.7 114 3-136 30-147 (204)
405 PRK00635 excinuclease ABC subu 99.2 3.2E-10 6.9E-15 121.9 14.0 47 87-136 818-868 (1809)
406 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.7E-10 3.8E-15 100.0 8.3 43 91-136 143-188 (213)
407 TIGR00630 uvra excinuclease AB 99.1 4.8E-10 1E-14 115.1 12.7 49 87-136 837-887 (924)
408 PTZ00132 GTP-binding nuclear p 99.1 2.3E-10 4.9E-15 98.7 8.8 39 87-128 161-205 (215)
409 PRK00349 uvrA excinuclease ABC 99.1 6.5E-10 1.4E-14 114.4 13.4 48 86-136 838-889 (943)
410 KOG0062 ATPase component of AB 99.1 4.1E-10 8.9E-15 106.9 10.0 121 5-136 393-535 (582)
411 cd03284 ABC_MutS1 MutS1 homolo 99.1 7.1E-10 1.5E-14 96.4 10.3 108 4-136 32-149 (216)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.1 4E-10 8.8E-15 98.3 7.7 110 4-136 32-149 (222)
413 TIGR01069 mutS2 MutS2 family p 99.0 5.6E-10 1.2E-14 113.1 8.8 115 3-136 323-441 (771)
414 COG2401 ABC-type ATPase fused 99.0 1.9E-09 4E-14 100.4 10.9 132 3-137 410-565 (593)
415 cd03287 ABC_MSH3_euk MutS3 hom 99.0 8.9E-10 1.9E-14 96.2 8.5 115 4-136 33-150 (222)
416 KOG0063 RNAse L inhibitor, ABC 99.0 1.3E-09 2.7E-14 101.7 8.4 121 3-132 368-509 (592)
417 KOG0060 Long-chain acyl-CoA tr 99.0 4.4E-09 9.5E-14 101.2 11.0 127 4-136 463-623 (659)
418 cd01120 RecA-like_NTPases RecA 98.9 8.9E-09 1.9E-13 83.3 8.9 120 5-137 2-134 (165)
419 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.7E-08 3.6E-13 87.3 10.6 69 59-136 123-195 (220)
420 cd01876 YihA_EngB The YihA (En 98.9 2.5E-07 5.3E-12 74.8 16.9 60 164-247 109-169 (170)
421 TIGR00436 era GTP-binding prot 98.9 1.1E-07 2.4E-12 85.1 16.2 119 98-252 47-167 (270)
422 PRK00089 era GTPase Era; Revie 98.9 3.1E-07 6.6E-12 83.0 18.9 120 98-252 52-174 (292)
423 KOG0066 eIF2-interacting prote 98.8 4.1E-09 9E-14 98.7 6.2 50 87-143 421-471 (807)
424 PRK08533 flagellar accessory p 98.8 6.4E-09 1.4E-13 91.2 7.1 39 98-137 117-160 (230)
425 cd04163 Era Era subfamily. Er 98.8 4.5E-07 9.8E-12 73.0 17.4 116 98-247 50-167 (168)
426 cd01881 Obg_like The Obg-like 98.8 4.7E-08 1E-12 80.4 11.7 117 99-245 44-173 (176)
427 PF02421 FeoB_N: Ferrous iron 98.8 1E-08 2.2E-13 84.7 7.6 152 5-244 3-156 (156)
428 cd01898 Obg Obg subfamily. Th 98.8 1.2E-07 2.7E-12 77.6 14.2 118 100-247 49-169 (170)
429 PRK00454 engB GTP-binding prot 98.8 6E-07 1.3E-11 75.6 18.2 119 99-249 70-194 (196)
430 cd01131 PilT Pilus retraction 98.8 7.1E-08 1.5E-12 82.6 12.3 102 4-136 3-105 (198)
431 PRK10416 signal recognition pa 98.8 1.5E-07 3.3E-12 86.4 15.0 40 2-41 114-153 (318)
432 cd00880 Era_like Era (E. coli 98.8 6.9E-08 1.5E-12 76.6 11.2 119 98-247 44-162 (163)
433 COG3910 Predicted ATPase [Gene 98.8 9.2E-08 2E-12 80.8 12.0 125 3-136 38-184 (233)
434 KOG0064 Peroxisomal long-chain 98.8 1.1E-08 2.5E-13 97.5 7.4 124 5-136 511-665 (728)
435 PRK09435 membrane ATPase/prote 98.8 1.2E-07 2.7E-12 87.4 13.9 42 2-43 56-97 (332)
436 COG3845 ABC-type uncharacteriz 98.7 8.4E-08 1.8E-12 91.0 11.3 131 3-136 285-459 (501)
437 cd01888 eIF2_gamma eIF2-gamma 98.7 5.6E-07 1.2E-11 77.2 15.4 25 224-248 174-198 (203)
438 COG1100 GTPase SAR1 and relate 98.7 3E-09 6.5E-14 91.3 0.8 122 3-126 6-137 (219)
439 TIGR00750 lao LAO/AO transport 98.7 4.4E-07 9.5E-12 82.7 15.0 41 2-42 34-74 (300)
440 cd03241 ABC_RecN RecN ATPase i 98.7 2.5E-08 5.5E-13 89.6 6.7 48 87-136 179-229 (276)
441 cd01124 KaiC KaiC is a circadi 98.7 2.1E-08 4.5E-13 84.1 5.5 38 98-136 95-136 (187)
442 cd04139 RalA_RalB RalA/RalB su 98.7 1.8E-07 3.9E-12 75.9 10.9 58 164-248 104-161 (164)
443 cd04155 Arl3 Arl3 subfamily. 98.7 1.3E-06 2.8E-11 71.9 16.2 23 3-25 15-37 (173)
444 cd04160 Arfrp1 Arfrp1 subfamil 98.7 2.3E-07 5.1E-12 75.9 11.4 116 98-245 49-165 (167)
445 TIGR02788 VirB11 P-type DNA tr 98.7 1.2E-07 2.6E-12 86.6 10.6 100 3-132 145-244 (308)
446 PRK00409 recombination and DNA 98.7 5.4E-08 1.2E-12 99.0 8.9 112 4-136 329-446 (782)
447 cd03286 ABC_MSH6_euk MutS6 hom 98.7 4.6E-08 1E-12 85.2 7.2 110 4-136 32-149 (218)
448 PRK13695 putative NTPase; Prov 98.7 1.8E-08 3.8E-13 84.3 4.4 122 4-136 2-132 (174)
449 COG0178 UvrA Excinuclease ATPa 98.7 3.4E-07 7.4E-12 91.3 13.7 58 85-143 829-889 (935)
450 PRK09866 hypothetical protein; 98.7 3.8E-06 8.3E-11 82.8 20.5 120 98-249 229-353 (741)
451 PRK00635 excinuclease ABC subu 98.7 2.1E-07 4.6E-12 100.6 12.7 51 85-136 1706-1758(1809)
452 KOG0065 Pleiotropic drug resis 98.7 4.7E-08 1E-12 101.7 7.4 122 4-134 143-315 (1391)
453 cd01895 EngA2 EngA2 subfamily. 98.6 1.2E-06 2.6E-11 71.2 14.2 63 163-247 111-173 (174)
454 PRK10463 hydrogenase nickel in 98.6 1.2E-06 2.5E-11 79.2 15.2 178 3-246 105-286 (290)
455 cd00157 Rho Rho (Ras homology) 98.6 2.5E-07 5.3E-12 75.8 9.8 68 164-246 103-170 (171)
456 cd00881 GTP_translation_factor 98.6 1.3E-06 2.8E-11 72.4 14.0 126 98-248 61-186 (189)
457 smart00382 AAA ATPases associa 98.6 6.3E-07 1.4E-11 69.6 11.4 34 3-36 3-36 (148)
458 COG1159 Era GTPase [General fu 98.6 2.1E-06 4.5E-11 77.2 15.7 170 4-258 8-181 (298)
459 cd04104 p47_IIGP_like p47 (47- 98.6 3.2E-06 7E-11 72.1 16.2 32 3-34 2-33 (197)
460 PF00009 GTP_EFTU: Elongation 98.6 9.8E-08 2.1E-12 80.6 6.7 116 98-248 69-186 (188)
461 PRK12298 obgE GTPase CgtA; Rev 98.6 4.1E-06 8.8E-11 79.1 18.2 121 100-250 208-334 (390)
462 TIGR00231 small_GTP small GTP- 98.6 2E-06 4.4E-11 68.1 13.9 53 165-245 108-160 (161)
463 cd01878 HflX HflX subfamily. 98.6 1E-06 2.2E-11 75.0 12.8 23 3-25 42-64 (204)
464 PRK14974 cell division protein 98.6 2.8E-06 6.1E-11 78.5 16.5 154 2-182 140-296 (336)
465 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.5E-06 5.5E-11 74.5 15.4 211 5-246 2-220 (224)
466 TIGR00554 panK_bact pantothena 98.6 4.5E-08 9.8E-13 88.6 4.0 39 2-40 62-102 (290)
467 cd03115 SRP The signal recogni 98.5 1.4E-06 3.1E-11 72.5 12.1 38 3-40 1-38 (173)
468 cd01862 Rab7 Rab7 subfamily. 98.5 1.6E-06 3.6E-11 70.9 12.3 59 165-249 109-167 (172)
469 cd00882 Ras_like_GTPase Ras-li 98.5 6E-07 1.3E-11 70.1 9.2 113 98-245 44-156 (157)
470 TIGR01420 pilT_fam pilus retra 98.5 1.2E-06 2.6E-11 81.3 12.6 103 3-136 123-226 (343)
471 PRK12299 obgE GTPase CgtA; Rev 98.5 3.3E-06 7.2E-11 78.1 14.9 122 98-250 205-329 (335)
472 cd01864 Rab19 Rab19 subfamily. 98.5 1.1E-05 2.4E-10 66.0 15.9 59 163-247 106-164 (165)
473 cd04164 trmE TrmE (MnmE, ThdF, 98.5 3E-06 6.5E-11 67.9 12.1 106 98-247 48-155 (157)
474 PF00448 SRP54: SRP54-type pro 98.5 4.3E-06 9.2E-11 71.7 13.6 155 2-182 1-157 (196)
475 cd03242 ABC_RecF RecF is a rec 98.5 1.4E-06 3E-11 78.1 11.0 37 87-126 192-238 (270)
476 PRK14723 flhF flagellar biosyn 98.5 3E-06 6.5E-11 85.4 14.4 87 3-109 186-274 (767)
477 PF10662 PduV-EutP: Ethanolami 98.5 5.8E-06 1.3E-10 67.2 13.4 102 103-245 40-142 (143)
478 PRK09270 nucleoside triphospha 98.5 1.2E-07 2.6E-12 82.9 3.8 38 2-39 33-71 (229)
479 cd01884 EF_Tu EF-Tu subfamily. 98.4 6.8E-06 1.5E-10 70.3 14.0 24 3-26 3-26 (195)
480 cd01879 FeoB Ferrous iron tran 98.4 2.2E-06 4.8E-11 69.1 10.5 113 98-247 42-155 (158)
481 TIGR02729 Obg_CgtA Obg family 98.4 1.2E-05 2.5E-10 74.3 16.1 119 99-248 205-328 (329)
482 COG0370 FeoB Fe2+ transport sy 98.4 2.7E-06 5.8E-11 83.8 12.2 158 2-247 3-162 (653)
483 PRK14722 flhF flagellar biosyn 98.4 3.3E-06 7.1E-11 79.0 12.3 91 3-113 138-232 (374)
484 PRK06067 flagellar accessory p 98.4 7.6E-07 1.6E-11 77.9 7.6 36 3-39 26-62 (234)
485 cd00879 Sar1 Sar1 subfamily. 98.4 4.8E-06 1E-10 69.8 12.2 22 3-24 20-41 (190)
486 cd01889 SelB_euk SelB subfamil 98.4 4.6E-06 1E-10 70.5 12.0 117 98-248 67-185 (192)
487 PRK07721 fliI flagellum-specif 98.4 3E-06 6.6E-11 80.9 11.9 38 3-40 159-196 (438)
488 cd04107 Rab32_Rab38 Rab38/Rab3 98.4 9.2E-06 2E-10 69.1 13.8 60 164-249 109-168 (201)
489 cd01130 VirB11-like_ATPase Typ 98.4 3.3E-07 7.1E-12 77.6 4.7 35 3-37 26-60 (186)
490 cd04145 M_R_Ras_like M-Ras/R-R 98.4 1.3E-05 2.8E-10 65.0 13.9 57 164-247 106-162 (164)
491 TIGR00064 ftsY signal recognit 98.4 5.6E-06 1.2E-10 74.5 12.6 109 3-126 73-183 (272)
492 smart00053 DYNc Dynamin, GTPas 98.4 1.6E-05 3.4E-10 70.3 15.1 31 4-34 28-60 (240)
493 cd01894 EngA1 EngA1 subfamily. 98.4 9E-06 2E-10 65.2 12.5 109 98-246 44-155 (157)
494 PRK11889 flhF flagellar biosyn 98.4 6.6E-06 1.4E-10 77.3 13.1 39 3-41 242-280 (436)
495 KOG0063 RNAse L inhibitor, ABC 98.4 8.1E-07 1.8E-11 83.3 7.0 124 4-139 102-273 (592)
496 cd03112 CobW_like The function 98.4 2.4E-06 5.1E-11 70.6 9.1 24 4-27 2-25 (158)
497 cd01887 IF2_eIF5B IF2/eIF5B (i 98.4 2.3E-05 4.9E-10 63.8 14.9 25 224-248 141-165 (168)
498 smart00173 RAS Ras subfamily o 98.4 3.8E-06 8.1E-11 68.4 10.1 57 164-247 104-160 (164)
499 PRK12723 flagellar biosynthesi 98.3 1.2E-05 2.6E-10 75.8 14.5 149 2-182 174-329 (388)
500 cd04171 SelB SelB subfamily. 98.3 2.6E-05 5.6E-10 63.1 14.8 22 4-25 2-23 (164)
No 1
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=1.4e-62 Score=413.58 Aligned_cols=264 Identities=64% Similarity=1.142 Sum_probs=246.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
|+|.+.++||+||||||+|+.|..+.+..++++.++|+|||++.+.|+..++||+.|+++++|+.+.+|||||++||+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
+.+++ .|+...+..+ +.+|+|||+|||+++++|..+++++++++++.+.++++||++|+.++.|..+|+|+++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999988866 889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHhhcCCeeEeeccccccCC--ccccccccCcCHHHHHH--HhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhh
Q 024360 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS 236 (268)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~--~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~ 236 (268)
|+++++|||||+||.||++. +.++++|+++|...+.+ +.+. .++||.+|++.++++++||++|+|+|++..+++|
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999985 23789999988666543 2332 3479999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 024360 237 IRYVLSQIDNCIQWGEDADLKIKDFDPEDDD 267 (268)
Q Consensus 237 ~~~l~~~id~~~~~~e~~~~~~~~~~~~~~~ 267 (268)
+..+++.||.|.||+||.|+++|+.+|.+++
T Consensus 239 i~~iL~~ID~aiQy~Ed~E~k~~d~~e~d~~ 269 (273)
T KOG1534|consen 239 INIILSYIDDAIQYGEDLEPKEPDEDEDDDS 269 (273)
T ss_pred HHHHHHHHHHHHHhccccCccCCCccccccc
Confidence 9999999999999999999999987666554
No 2
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.1e-60 Score=407.70 Aligned_cols=249 Identities=45% Similarity=0.806 Sum_probs=231.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
|+|+++||||+||||||+|..+..++...++++.++|+||++++++|++.++|++.++++++|++++|||||++++|+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
+..++ .|+...+... ...|+|||+|||+++++++..++.+++++.+.+.++++|+++|+|+|++|++|+|.+++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9999988874 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCeeEeeccccccCCccccc---cccC--cCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCCeeeEEeeccCh
Q 024360 161 MVQLELPHVNILSKMDLVTNKKEIE---DYLN--PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (268)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~~~~---~~~~--~~~~~l~~~l~~-~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~ 234 (268)
|+.++.|||||+||+|++++++.+. +|++ .|..+|...++. +...+|+||+++||++|+||++|+|.+|++.|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 9999999999999999999886442 2333 266677655543 455799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcc
Q 024360 235 SSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 235 ~~~~~l~~~id~~~~~~ 251 (268)
+||.++++.||+|+||.
T Consensus 239 eSml~l~~~IDkAnGy~ 255 (290)
T KOG1533|consen 239 ESMLRLQQTIDKANGYI 255 (290)
T ss_pred HHHHHHHHHHHhccCeE
Confidence 99999999999999984
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=2.7e-51 Score=360.65 Aligned_cols=236 Identities=50% Similarity=0.876 Sum_probs=186.0
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhhhhHH
Q 024360 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (268)
Q Consensus 7 liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~~~ls 86 (268)
|+||+||||||+|+.+..+++..++++.++|+||++++++|.+++||||.++++++|++++|||||++++|++.+..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcC
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~ 166 (268)
.|+...+... +++|+|+|+|||++.++++..++.+++.|++ +.++++||++|++++.+|.+|+++++++++.|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9998888665 7799999999999999999999999999977 7888999999999999999999999999999999999
Q ss_pred CeeEeeccccccCCcc-ccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCe-eeEEeeccChhhHHHHHHHH
Q 024360 167 PHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 167 p~i~vlsk~dll~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~l~~~~~~~~~~l~~~i 244 (268)
||+||+||+|++++.. ...+|+. +.+.+...++.. ++++++++++++++|+++ +|+|+|+++++++.+|+++|
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~-d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFE-DPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHH-SHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred CEEEeeeccCcccchhHHHHHHhc-ChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 9999999999998431 1122332 555554444432 899999999999999998 99999999999999999999
Q ss_pred HHhhhc
Q 024360 245 DNCIQW 250 (268)
Q Consensus 245 d~~~~~ 250 (268)
|+|+||
T Consensus 233 d~a~~y 238 (238)
T PF03029_consen 233 DKANQY 238 (238)
T ss_dssp HHHHH-
T ss_pred HHHhcC
Confidence 999998
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-37 Score=268.66 Aligned_cols=246 Identities=26% Similarity=0.458 Sum_probs=217.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
|.++.++|.+||||||+++-|.+++....-..++.|+||+..+++|+.++||||.+...++|++++||||||+.-|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 46889999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred hhhHH--HHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHH
Q 024360 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (268)
Q Consensus 82 ~~~ls--~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (268)
..++. ..+.+.-.. .-+|+|+|.|||++.+++.....-|...|+. ...+|++|++|+.....|..|+|++|.++|
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 99883 233333333 5579999999999999999999666677765 467779999999999999999999999999
Q ss_pred HHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhc-CCeeeEEeeccChhhHH
Q 024360 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIR 238 (268)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~l~~~~~~~~~ 238 (268)
.+++..+|.+.||||+|+.... -..+|.. |.+.+.+++++...+....|.+++.-.+++| +-++++-+|+.++++++
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~-fa~eWm~-DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSE-FALEWMT-DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHhccCCeEEEEecccccccH-HHHHHHH-HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 9999999999999999998877 3566766 7788888888655578889999999999995 77999999999999999
Q ss_pred HHHHHHHHhhhccc
Q 024360 239 YVLSQIDNCIQWGE 252 (268)
Q Consensus 239 ~l~~~id~~~~~~e 252 (268)
+++.+||.....++
T Consensus 254 df~~av~~~vdEy~ 267 (366)
T KOG1532|consen 254 DFFTAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
No 5
>PRK13768 GTPase; Provisional
Probab=99.97 E-value=3.6e-30 Score=228.69 Aligned_cols=248 Identities=31% Similarity=0.559 Sum_probs=216.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
|++++++.||.||||||++..++..+...+.+|.+.+.||+....+|.+..++++.++..++|...+++|+++.++|++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 88999999999999999999999998877778999999999988999899999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
...++ .|+...+... +++|+++|.||+.+++.++...+.+.+.+.... +-++++++|+....++.++.....+..+.
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 88777 6777676654 679999999999999988888878888886544 66788899998888899999988888889
Q ss_pred HHhhcCCeeEeeccccccCCcccc---ccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChhh
Q 024360 161 MVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESS 236 (268)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~l~~~~~~~ 236 (268)
+.+.+.|++.|+||+|+++.. +. ..++. +++.+..++....+.+ +++++++++.+++++. .+++++|+.++++
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g 234 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEE-ELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEG 234 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCch-hHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcC
Confidence 889999999999999999865 33 33444 6677767776555445 8999999999999886 6899999999999
Q ss_pred HHHHHHHHHHhhhccccC
Q 024360 237 IRYVLSQIDNCIQWGEDA 254 (268)
Q Consensus 237 ~~~l~~~id~~~~~~e~~ 254 (268)
+++++..|.+.+..+||.
T Consensus 235 l~~L~~~I~~~l~~~~~~ 252 (253)
T PRK13768 235 FDELYAAIQEVFCGGEDL 252 (253)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 999999999999999886
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=209.15 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=114.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------------CCCCCCcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------------~~~~y~~~~~i~~~i~--------- 58 (268)
.+++|+||+|||||||+|||+++-+|++|+|.++|.++.. +++..+|.+|+-+|++
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 4789999999999999999999999999999999975531 3445577889999887
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++++||... .+.++.++| ++|||||+. +|++++|||||+ |||....+++ +.+
T Consensus 109 ~k~eA~~~A~~lL~~VGL~~k------a~~yP~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm 179 (240)
T COG1126 109 SKAEAREKALELLEKVGLADK------ADAYPAQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVM 179 (240)
T ss_pred CHHHHHHHHHHHHHHcCchhh------hhhCccccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHH
Confidence 5678889999887 466665554 999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEEEecccccccCHHHHHH
Q 024360 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+.|+++|.|.++|. |.+.-...+.+
T Consensus 180 ~~LA~eGmTMivVT----HEM~FAr~Vad 204 (240)
T COG1126 180 KDLAEEGMTMIIVT----HEMGFAREVAD 204 (240)
T ss_pred HHHHHcCCeEEEEe----chhHHHHHhhh
Confidence 99999999987773 55444444444
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.8e-28 Score=213.34 Aligned_cols=137 Identities=18% Similarity=0.333 Sum_probs=110.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----CCCCC-Cc--------ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----~~~~y-~~--------~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+|++.|+++|.+|+|.+.|..... ..++| || .++|+|.+.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 4789999999999999999999999999999999875422 23445 22 357777765
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++++++|+... .++..+++| +.|||||+. +|++++||||++ +|+.++..+. ++
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~------~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~l 181 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDL------RDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DL 181 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhh------hCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HH
Confidence 6788999999865 244444433 999999999 999999999999 9999999999 99
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHHHH
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++++|++|++|+ |.+.....+++
T Consensus 182 L~~l~~eg~tIl~vt----HDL~~v~~~~D 207 (254)
T COG1121 182 LKELRQEGKTVLMVT----HDLGLVMAYFD 207 (254)
T ss_pred HHHHHHCCCEEEEEe----CCcHHhHhhCC
Confidence 999998899998885 65555555554
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.4e-27 Score=210.66 Aligned_cols=137 Identities=24% Similarity=0.406 Sum_probs=105.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+|+|+|+++|.+|+|.++|.+... +.++| +..++|+|.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 5789999999999999999999999999999999987632 12222 22445555443
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.... ++.... +++|||++|++ +|+++++||||+ ||+..+.+++ +
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la------~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ 179 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLA------DRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-E 179 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHh------cCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-H
Confidence 66778999987752 333333 33999999999 999999999999 9999999999 9
Q ss_pred HHHHHHh-CCCeEEEEEecccccccCHHHHHH
Q 024360 122 FVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++++ +|.++|+| ++| +.-...|++
T Consensus 180 ll~~l~~~~~~tvv~v-lHD---lN~A~ryad 207 (258)
T COG1120 180 LLRDLNREKGLTVVMV-LHD---LNLAARYAD 207 (258)
T ss_pred HHHHHHHhcCCEEEEE-ecC---HHHHHHhCC
Confidence 9999984 48888766 344 333445554
No 9
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.5e-27 Score=198.16 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC-------------CCCCCcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~-------------~~~y~~~~~i~~~i~----------- 58 (268)
-++||+|||||||||++++|++++.|++|+|+++|.|...+ ..+++..+|+++++.
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 47899999999999999999999999999999999886432 233455788998875
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++++.++|... +++...++| +.||||+++ +|++++||||++ ||..+++.+. ++++++
T Consensus 109 ~~kari~~l~k~l~l~~~------~~rRv~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~ 179 (245)
T COG4555 109 EIKARIAELSKRLQLLEY------LDRRVGEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQL 179 (245)
T ss_pred HHHHHHHHHHHHhChHHH------HHHHHhhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHh
Confidence 5677888887765 677777766 999999999 999999999999 9999998877 999999
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+..|..++ +.||.+.+...+|+
T Consensus 180 k~egr~vi----FSSH~m~EvealCD 201 (245)
T COG4555 180 KNEGRAVI----FSSHIMQEVEALCD 201 (245)
T ss_pred hcCCcEEE----EecccHHHHHHhhh
Confidence 87787774 56899999999987
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.3e-25 Score=203.33 Aligned_cols=141 Identities=16% Similarity=0.287 Sum_probs=110.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCC-------CCcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~-------y~~~~~i~~~i~----------- 58 (268)
-++|++||||||||||+|+|+|+++|++|+|.+.|.++.. +.++ +++.+|++|++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 4789999999999999999999999999999999988753 1233 356788888865
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhh--hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCC
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~--~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~ 130 (268)
++++++.++|.+.... . ...+.. +.++.||.+|++ +|+++||||||+ ||+.++..++ ++++.++++|
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~-~-~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g 186 (293)
T COG1131 112 EAEERIEELLELFGLEDKANK-K-VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCc-c-hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 4578899999873210 0 112221 223899999999 999999999999 9999999988 9999998876
Q ss_pred -CeEEEEEecccccccCHHHHHH
Q 024360 131 -FNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 131 -~~ii~v~l~d~~~~~d~~~~~s 152 (268)
.+|+ +.+|.+.+...+|+
T Consensus 187 ~~tvl----issH~l~e~~~~~d 205 (293)
T COG1131 187 GVTIL----LSTHILEEAEELCD 205 (293)
T ss_pred CcEEE----EeCCcHHHHHHhCC
Confidence 5664 45788887777664
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=194.18 Aligned_cols=126 Identities=15% Similarity=0.184 Sum_probs=104.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------CCCCCCcccChhhhhh---------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------~~~~y~~~~~i~~~i~--------------- 58 (268)
.+++|+||+|||||||+|+++|+.+|++|+|.+.|..+.. ++....|..||++|+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 4689999999999999999999999999999999976521 2333466778888875
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCC
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~ 130 (268)
+.++++.+||.... +.++.++| ++|||+++. +|+++++|||+. ||..++..+...+++-+++.+
T Consensus 110 ~a~~~L~~VgL~~~~------~~~P~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~ 181 (248)
T COG1116 110 RAKELLELVGLAGFE------DKYPHQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETR 181 (248)
T ss_pred HHHHHHHHcCCcchh------hcCccccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC
Confidence 67889999998873 66666655 999999999 999999999999 999999888855555556668
Q ss_pred CeEEEE
Q 024360 131 FNVCAV 136 (268)
Q Consensus 131 ~~ii~v 136 (268)
.|+++|
T Consensus 182 ~TvllV 187 (248)
T COG1116 182 KTVLLV 187 (248)
T ss_pred CEEEEE
Confidence 888877
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=5.2e-25 Score=191.54 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=112.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------------CCCCCCcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------------~~~~y~~~~~i~~~i~---------- 58 (268)
.+++++||+||||||++|+|+++++|++|+|+++|.+... +.++.+|.+||.+++.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k 107 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK 107 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence 4678999999999999999999999999999999988743 2344478999999987
Q ss_pred ------HHHHHHHhCCCCC-CChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 59 ------LEDVMEELGLGPN-GGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 59 ------~~~~m~~~~L~~~-g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
++++|+.+||.|. -+.+|+.+...++ +++.+||||+. +|+++++|||+. |||.+|..+- +.+.+++++
T Consensus 108 ~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~~ 184 (309)
T COG1125 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQKE 184 (309)
T ss_pred HHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHHH
Confidence 7899999999984 3222332222222 33899999999 999999999999 9999998876 777777654
Q ss_pred -CCeEEEEEecccccccCHHHHHH
Q 024360 130 -NFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+.|+++| +|.+.+..++.+
T Consensus 185 l~kTivfV----THDidEA~kLad 204 (309)
T COG1125 185 LGKTIVFV----THDIDEALKLAD 204 (309)
T ss_pred hCCEEEEE----ecCHHHHHhhhc
Confidence 8898877 366655555443
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=197.84 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=124.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
-++||||++|||||||+|+++++-+|++|+|.++|.|... +.+++ ....||.+++.
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 4789999999999999999999999999999999977632 33333 23467777765
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+||... .+.++.++| ++|||||+. +|++|+.||||+ |||.+.+.++ ++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk------~~~yP~qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~L 183 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDK------ADRYPAQLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-EL 183 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhh------hccCchhcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HH
Confidence 7889999999977 466666655 999999999 999999999999 9999999999 99
Q ss_pred HHHHHh-CCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
++.+++ .|.||++| +|-+.=...+|+++.+...+.+.-..+..+||
T Consensus 184 L~~In~~lglTIvlI----THEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 184 LKDINRELGLTIVLI----THEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHHcCCEEEEE----echHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999985 49999877 36666677788766555555444444444444
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=1.8e-24 Score=187.53 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=102.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||+|||||||++++.|+.+|++|.|.+.|.|... ++++| -+++|+.|++.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 4689999999999999999999999999999999977632 22333 56789999887
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+|+++...-.++.+... ++++++|||||+. +|++++.||||. ||..+...++ ++++.+
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~~ 188 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLREL 188 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHHH
Confidence 456677789986532111112222 2244999999999 999999999999 9999999999 999999
Q ss_pred HhC-CCeEEEE
Q 024360 127 KSR-NFNVCAV 136 (268)
Q Consensus 127 ~~~-~~~ii~v 136 (268)
+++ |.++++|
T Consensus 189 ~~~~g~tii~V 199 (226)
T COG1136 189 NKERGKTIIMV 199 (226)
T ss_pred HHhcCCEEEEE
Confidence 755 7788777
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=1.7e-24 Score=197.21 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=107.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++.+++++++.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA 113 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987632 22333 34578888764
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. .+....++| ++||++|++ +|+++||||||+ ||+.+++.+. ++++++
T Consensus 114 ~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l 184 (306)
T PRK13537 114 AARALVPPLLEFAKLENK------ADAKVGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSL 184 (306)
T ss_pred HHHHHHHHHHHHcCCchH------hcCchhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 3356777787653 233333332 899999999 999999999999 9999998888 899999
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++|.+++++ +|.+.+...+|+
T Consensus 185 ~~~g~till~----sH~l~e~~~~~d 206 (306)
T PRK13537 185 LARGKTILLT----THFMEEAERLCD 206 (306)
T ss_pred HhCCCEEEEE----CCCHHHHHHhCC
Confidence 7668887644 688777767665
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=7.9e-25 Score=189.06 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=103.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCC-------CCcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD-------YPVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~-------y~~~~~i~~~i~------- 58 (268)
.+++|+||+|||||||+|+|.|+++|++|+|.+.|.+... .+++ .+.++||+||+.
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 4789999999999999999999999999999999988632 1222 244789999886
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+..-++.+||.+.. .+.++.++| ++||||++. +|+++++||||+ |||.+...+- +
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~-----~~~~PsELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~ 186 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAA-----ADLYPSELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-E 186 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhh-----hhhCchhhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-H
Confidence 34455677888774 356666655 999999999 999999999999 9999997777 9
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
+|+++++. |.|+++|
T Consensus 187 LI~~L~~~lg~T~i~V 202 (263)
T COG1127 187 LIRELNDALGLTVIMV 202 (263)
T ss_pred HHHHHHHhhCCEEEEE
Confidence 99999864 8887766
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.91 E-value=6.5e-24 Score=196.02 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=106.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++.+++++++.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987632 22333 34567777664
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++++.+++.+. .+....++| +.||++|++ +|+++||||||+ ||+.+++.++ ++++++
T Consensus 148 ~~~~~~~~ll~~~~L~~~------~~~~~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l 218 (340)
T PRK13536 148 EIEAVIPSLLEFARLESK------ADARVSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSL 218 (340)
T ss_pred HHHHHHHHHHHHcCCchh------hCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHH
Confidence 2356777788653 233333333 999999999 999999999999 9999999888 999998
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
++.|.+++++ +|.+.+...+|+
T Consensus 219 ~~~g~tilis----SH~l~e~~~~~d 240 (340)
T PRK13536 219 LARGKTILLT----THFMEEAERLCD 240 (340)
T ss_pred HhCCCEEEEE----CCCHHHHHHhCC
Confidence 7767887544 677777777665
No 18
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1e-24 Score=181.42 Aligned_cols=139 Identities=19% Similarity=0.279 Sum_probs=112.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||+|||||||++.++|+..|.+|.|.++|.|.. .+.++. +..+||.+++.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 478999999999999999999999999999999998753 222221 23456666664
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++.+..++||+.. +++++..+| ++|||+++. +-+++++|||++ |||..+.++. .++.++.
T Consensus 106 ~r~~v~~aa~~vGl~~~------~~RLP~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~ 176 (231)
T COG3840 106 QREKVEAAAAQVGLAGF------LKRLPGELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLC 176 (231)
T ss_pred HHHHHHHHHHHhChhhH------hhhCccccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHH
Confidence 7788889999887 577776655 999999999 999999999999 9999999988 9999887
Q ss_pred h-CCCeEEEEEecccccccCHHHHHHHH
Q 024360 128 S-RNFNVCAVYLLDSQFITDVTKFISGC 154 (268)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (268)
. ++.|+++| +|...|...+.+++
T Consensus 177 ~E~~~TllmV----TH~~~Da~~ia~~~ 200 (231)
T COG3840 177 DERKMTLLMV----THHPEDAARIADRV 200 (231)
T ss_pred HhhCCEEEEE----eCCHHHHHHhhhce
Confidence 4 58888777 47777777666543
No 19
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=6e-24 Score=193.25 Aligned_cols=137 Identities=18% Similarity=0.273 Sum_probs=105.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++.+++++++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 99 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976522 12333 34567777654
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.+++.++ ++++++
T Consensus 100 ~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~ 170 (302)
T TIGR01188 100 EAEERAEELLELFELGEA------ADRPVGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRAL 170 (302)
T ss_pred HHHHHHHHHHHHcCChhH------hCCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 3457788888653 23333333 3999999999 999999999999 9999998888 889998
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++|.+++++ +|.+.+...+|+
T Consensus 171 ~~~g~tvi~~----sH~~~~~~~~~d 192 (302)
T TIGR01188 171 KEEGVTILLT----THYMEEADKLCD 192 (302)
T ss_pred HhCCCEEEEE----CCCHHHHHHhCC
Confidence 7667777655 576665555554
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=186.30 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=110.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC--------CC------CC---CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NF------DY---PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~--------~~------~y---~~~~~i~~~i~------- 58 (268)
.++||+|++|||||||+++++|+.+|+.|+|.+.|...... .+ +| .|..+|++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 47899999999999999999999999999999999644221 11 12 44566666554
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
+.++++.+||.+.-..++..+...++ ++++|||||.. +|++||+||||+ ||...+..++ +++.+++++
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~~ 190 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKKE 190 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHHh
Confidence 58899999999864333333322222 33999999999 999999999999 9999999999 999999754
Q ss_pred -CCeEEEEEecccccccCHHHHHHHHH
Q 024360 130 -NFNVCAVYLLDSQFITDVTKFISGCM 155 (268)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (268)
+.+.++| +|.+.=...+|+++.
T Consensus 191 ~~lt~l~I----sHdl~~v~~~cdRi~ 213 (252)
T COG1124 191 RGLTYLFI----SHDLALVEHMCDRIA 213 (252)
T ss_pred cCceEEEE----eCcHHHHHHHhhhee
Confidence 7777766 466665566666543
No 21
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=8.3e-24 Score=182.91 Aligned_cols=125 Identities=15% Similarity=0.237 Sum_probs=96.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999876421 22333 22457776653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~ 180 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGK------AHALPMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RL 180 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HH
Confidence 3456777888654 23333333 3999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++.+.+++++
T Consensus 181 l~~~~~~~~tii~v 194 (216)
T TIGR00960 181 FEEFNRRGTTVLVA 194 (216)
T ss_pred HHHHHHCCCEEEEE
Confidence 88887667777655
No 22
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=8.4e-24 Score=193.17 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=104.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CC-------CCCCCcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AE-------NFDYPVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~-------~~~y~~~~~i~~~i~------------ 58 (268)
.+++++||||||||||+++|+|+.+|++|+|.+.|.+.. .+ +...+|.+||++|+.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~e 109 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAE 109 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHH
Confidence 368899999999999999999999999999999987653 23 334478899999986
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++.+.+++.+. +++.+.++| +++||||+. +|++++||||.+ ||...+..+. .-++++.
T Consensus 110 i~~rV~eva~~L~l~~l------L~r~P~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh 180 (338)
T COG3839 110 IDKRVKEVAKLLGLEHL------LNRKPLQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLH 180 (338)
T ss_pred HHHHHHHHHHHcCChhH------HhcCcccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHH
Confidence 6788889999887 566665554 999999999 999999999999 9999987766 7777776
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.|+|.|
T Consensus 181 ~~l~~T~IYV 190 (338)
T COG3839 181 ERLGTTTIYV 190 (338)
T ss_pred HhcCCcEEEE
Confidence 54 7777766
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.3e-23 Score=175.79 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=106.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---CCCCC--------------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---~~~~y--------------~~~~~i~~~i~------- 58 (268)
.++.|+||+|||||||+|.|++..+|++|+|.++|.|..+ ..++| -++.|+.|++.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 4678999999999999999999999999999999998743 22332 23568888876
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+||+.. ++.++.++| ++||||+++ +|++||.||||. |||....+++ ++
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k------~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~l 179 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHK------ARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RL 179 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchh------hhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HH
Confidence 6788999999887 455555444 999999999 999999999998 9999999999 99
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
+.+++..|.||++.
T Consensus 180 feeinr~GtTVl~A 193 (223)
T COG2884 180 FEEINRLGTTVLMA 193 (223)
T ss_pred HHHHhhcCcEEEEE
Confidence 99999889998765
No 24
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=7.1e-24 Score=183.44 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=119.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---CCCCC-------CcccChhhhhh--------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---~~~~y-------~~~~~i~~~i~-------------- 58 (268)
-+.|++|||||||||.+++|.|++.|++|+|.|+|.+... +.++| ++.+++.|.+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence 4789999999999999999999999999999999987643 34555 56788988765
Q ss_pred --HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 59 --~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
+..+|+++++..+. ...++.+| +.+..++.+ +|+++|||||++ |||.+.+- +++.+.+++++
T Consensus 109 ~~~~~wLer~~i~~~~------~~kIk~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~el-Lk~~I~~lk~~ 179 (300)
T COG4152 109 KKLQAWLERLEIVGKK------TKKIKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVEL-LKDAIFELKEE 179 (300)
T ss_pred HHHHHHHHhccccccc------cchHHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHH-HHHHHHHHHhc
Confidence 67899999997662 33343333 677778999 999999999999 99999854 55999999988
Q ss_pred CCeEEEEEecccccccCHHHHHHHHHHHHHHH
Q 024360 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (268)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (268)
|.||+ +++|.+.....+|+.+++...+.
T Consensus 180 GatIi----fSsH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 180 GATII----FSSHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred CCEEE----EecchHHHHHHHhhhhheecCCc
Confidence 99985 56899999999999886544443
No 25
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=1.8e-23 Score=180.99 Aligned_cols=125 Identities=22% Similarity=0.336 Sum_probs=96.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999876421 22333 23457766653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+.++| ++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~ 181 (218)
T cd03255 111 GVPKKERRERAEELLERVGLGDR------LNHYPSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-E 181 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCchh------hhcChhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 3456777888654 233333333 999999999 999999999999 9999998888 8
Q ss_pred HHHHHHh-CCCeEEEE
Q 024360 122 FVDHLKS-RNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v 136 (268)
+++++++ .+.+++++
T Consensus 182 ~l~~~~~~~~~tii~~ 197 (218)
T cd03255 182 LLRELNKEAGTTIVVV 197 (218)
T ss_pred HHHHHHHhcCCeEEEE
Confidence 8888876 47777655
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.3e-24 Score=199.08 Aligned_cols=137 Identities=16% Similarity=0.250 Sum_probs=107.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999986531 23333 33467777764
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+|+.+. .+..+.++| ++|||+|+. +|+++|+||||+ ||+.++..++ ++
T Consensus 112 ~~~~~~~~~v~e~l~~vgL~~~------~~~~~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~l 182 (343)
T TIGR02314 112 TPKDEIKRKVTELLALVGLGDK------HDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-EL 182 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 3567888888765 344444433 999999999 999999999999 9999999988 99
Q ss_pred HHHHHhC-CCeEEEEEecccccccCHHHHHH
Q 024360 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++++ |.+++++ +|.+.....+|+
T Consensus 183 L~~l~~~~g~tiili----TH~~~~v~~~~d 209 (343)
T TIGR02314 183 LKEINRRLGLTILLI----THEMDVVKRICD 209 (343)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 9999764 7888766 366555555554
No 27
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=191.76 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=103.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCC-------CCCcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENF-------DYPVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~-------~y~~~~~i~~~i~------------ 58 (268)
.+++++||+||||||++++|+|+.+|++|+|.++|.+.. .+++ ..+|.+||++|+.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~ 111 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA 111 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHH
Confidence 368899999999999999999999999999999997753 2333 3378899999965
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.++|++.+ ++++.++| ++|||||+. +|+++|||||.+ ||...|..+. .-++++
T Consensus 112 ~i~~rv~e~L~lV~L~~~~------~R~p~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~l 182 (352)
T COG3842 112 EIKARVEEALELVGLEGFA------DRKPHQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKEL 182 (352)
T ss_pred HHHHHHHHHHHHcCchhhh------hhChhhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHH
Confidence 67888899999873 55555444 999999999 999999999999 9999998877 555666
Q ss_pred H-hCCCeEEEEE
Q 024360 127 K-SRNFNVCAVY 137 (268)
Q Consensus 127 ~-~~~~~ii~v~ 137 (268)
. +.|.|+|+|.
T Consensus 183 q~~~giT~i~VT 194 (352)
T COG3842 183 QRELGITFVYVT 194 (352)
T ss_pred HHhcCCeEEEEE
Confidence 5 5588887773
No 28
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.2e-23 Score=179.83 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=96.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence 4789999999999999999999999999999999876521 22333 22456776653
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++| ++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 107 ~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~ 177 (213)
T cd03259 107 IRARVRELLELVGLEGL------LNRYPHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQ 177 (213)
T ss_pred HHHHHHHHHHHcCChhh------hhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456777787653 233333333 899999999 999999999999 9999998888 8888886
Q ss_pred h-CCCeEEEE
Q 024360 128 S-RNFNVCAV 136 (268)
Q Consensus 128 ~-~~~~ii~v 136 (268)
+ .|.+++++
T Consensus 178 ~~~~~tii~~ 187 (213)
T cd03259 178 RELGITTIYV 187 (213)
T ss_pred HHcCCEEEEE
Confidence 5 47777655
No 29
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=2e-23 Score=179.28 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=96.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----CCCCCC-C-------cccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-P-------VAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----~~~~~y-~-------~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. .+.+.| + ...++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ 106 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence 478999999999999999999999999999999997642 122333 1 1346666653
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCC
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~ 131 (268)
+.++++.+++.+. ++..+..+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.
T Consensus 107 ~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 177 (205)
T cd03226 107 AETVLKDLDLYAL------KERHPLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGK 177 (205)
T ss_pred HHHHHHHcCCchh------cCCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCC
Confidence 4567788888754 23333333 3999999999 999999999999 9999998888 88888876677
Q ss_pred eEEEE
Q 024360 132 NVCAV 136 (268)
Q Consensus 132 ~ii~v 136 (268)
+++++
T Consensus 178 tii~~ 182 (205)
T cd03226 178 AVIVI 182 (205)
T ss_pred EEEEE
Confidence 77655
No 30
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=2.5e-23 Score=179.58 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+.| .+..++++++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876521 22333 22356666643
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. ++..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 179 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHK------ADAFPEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DL 179 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 3456677777643 23333333 3999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++.+++++.+++++
T Consensus 180 l~~~~~~~~tii~~ 193 (214)
T TIGR02673 180 LKRLNKRGTTVIVA 193 (214)
T ss_pred HHHHHHcCCEEEEE
Confidence 88887667777655
No 31
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.6e-23 Score=176.97 Aligned_cols=136 Identities=14% Similarity=0.166 Sum_probs=99.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---CCCCCC-------CcccChhhhhh--------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELIS-------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---~~~~~y-------~~~~~i~~~i~-------------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence 468999999999999999999999999999999997652 112222 33457776653
Q ss_pred --HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 59 --LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 59 --~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +++++++++
T Consensus 107 ~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~ 177 (210)
T cd03269 107 RRIDEWLERLELSEY------ANKRVEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARA 177 (210)
T ss_pred HHHHHHHHHcCChHH------HhCcHhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC
Confidence 3456667777543 12222222 2899999999 999999999999 9999998888 888888766
Q ss_pred CCeEEEEEecccccccCHHHHH
Q 024360 130 NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+.+++++ +|...+...++
T Consensus 178 ~~tii~~----sH~~~~~~~~~ 195 (210)
T cd03269 178 GKTVILS----THQMELVEELC 195 (210)
T ss_pred CCEEEEE----CCCHHHHHHhh
Confidence 7777655 45544333333
No 32
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=4.2e-23 Score=178.61 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=96.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 111 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD 111 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999876421 12222 33467777653
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. ++....++| ++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~ 182 (218)
T cd03266 112 ELTARLEELADRLGMEEL------LDRRVGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQL 182 (218)
T ss_pred HHHHHHHHHHHHcCCHHH------HhhhhhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHH
Confidence 3457777887643 233333333 999999999 999999999999 9999998888 888888
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
++++.+++++
T Consensus 183 ~~~~~tii~~ 192 (218)
T cd03266 183 RALGKCILFS 192 (218)
T ss_pred HHCCCEEEEE
Confidence 7667777665
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=180.18 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=115.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++||||+|||||||+|+|+|+..|++|+|.++|.++.. ..+++ .+.+++.+++-
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 4689999999999999999999999999999999987732 12332 34455555543
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+-+.++++|+.+....+ .+.+. ++++++|||+|+. +|++++.|||++ |||.+.+.+
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V 186 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV 186 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence 55777888887653222 12222 2345999999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCe
Q 024360 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (268)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (268)
| ++++++++ .|.|+++. .|.+.-..+|+.+++-...+.+.++.|.
T Consensus 187 m-~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 187 M-DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred H-HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9 99999975 47777533 3555556788877655555544444443
No 34
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.8e-23 Score=178.76 Aligned_cols=136 Identities=15% Similarity=0.257 Sum_probs=100.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| .+.+++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999876421 12222 23456666552
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. .+..+..+| ++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 177 (220)
T cd03265 107 ERRERIDELLDFVGLLEA------ADRLVKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKL 177 (220)
T ss_pred HHHHHHHHHHHHcCCHHH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHH
Confidence 3556777888653 233333333 899999999 999999999999 9999998888 888888
Q ss_pred HhC-CCeEEEEEecccccccCHHHHH
Q 024360 127 KSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
.++ +.+++++ +|...+...++
T Consensus 178 ~~~~~~tvi~~----tH~~~~~~~~~ 199 (220)
T cd03265 178 KEEFGMTILLT----THYMEEAEQLC 199 (220)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhC
Confidence 765 7777655 35544333333
No 35
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.4e-23 Score=178.96 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=95.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCC-------CcccChhhhhh---------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS--------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y-------~~~~~i~~~i~--------------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| .+..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 110 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE 110 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 478999999999999999999999999999999987652 122333 23456766653
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-C
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~ 129 (268)
+.++++.+++.+. ++..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .
T Consensus 111 ~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~ 181 (220)
T cd03293 111 RAEELLELVGLSGF------ENAYPHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRET 181 (220)
T ss_pred HHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHc
Confidence 3456777777643 23333332 3999999999 999999999999 9999999988 88888854 4
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
+.+++++
T Consensus 182 ~~tiii~ 188 (220)
T cd03293 182 GKTVLLV 188 (220)
T ss_pred CCEEEEE
Confidence 6777655
No 36
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.89 E-value=5e-23 Score=174.78 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=94.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-Cc-------ccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-~~-------~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~ 98 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999987642 112233 11 235666553
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+..+ ++.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~ 169 (190)
T TIGR01166 99 LSEAEVERRVREALTAVGASGL------RERPTHCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AI 169 (190)
T ss_pred CCHHHHHHHHHHHHHHcCchhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HH
Confidence 3456667777653 23333333 3899999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++++.+++++
T Consensus 170 l~~~~~~~~tili~ 183 (190)
T TIGR01166 170 LRRLRAEGMTVVIS 183 (190)
T ss_pred HHHHHHcCCEEEEE
Confidence 88887667777665
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=5.2e-23 Score=187.18 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=102.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc------CCCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~------~~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...+.| .+..++++++.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence 478999999999999999999999999999999997652 122333 33567777664
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++||||||+ ||+.++..+. ++++++
T Consensus 111 ~~~~~~~~ll~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~ 181 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESK------ADVRVALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSL 181 (303)
T ss_pred HHHHHHHHHHHHCCChhH------hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 2345667777643 23333333 3899999999 999999999999 9999998888 889988
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++|.+++++ +|...+...+++
T Consensus 182 ~~~g~til~~----sH~~~~~~~~~d 203 (303)
T TIGR01288 182 LARGKTILLT----THFMEEAERLCD 203 (303)
T ss_pred HhCCCEEEEE----CCCHHHHHHhCC
Confidence 7667777655 566655555543
No 38
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=4.1e-23 Score=177.82 Aligned_cols=125 Identities=22% Similarity=0.262 Sum_probs=94.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC--------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999875421 22333 12346666543
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. ++..+..+ +++||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~ 178 (211)
T cd03225 108 EEEIEERVEEALELVGLEGL------RDRSPFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLK 178 (211)
T ss_pred HHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 3346777777643 23333333 3999999999 999999999999 9999998888 8888
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++++.+++++
T Consensus 179 ~~~~~~~tvi~~ 190 (211)
T cd03225 179 KLKAEGKTIIIV 190 (211)
T ss_pred HHHHcCCEEEEE
Confidence 887667777655
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.7e-23 Score=180.49 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=95.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 4689999999999999999999999999999999875421 12333 23457766653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 177 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGA------EDLYPAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-D 177 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-H
Confidence 3446777787653 12332222 3999999999 999999999999 9999998888 8
Q ss_pred HHHHHHh-CCCeEEEE
Q 024360 122 FVDHLKS-RNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v 136 (268)
+++++++ .+.+++++
T Consensus 178 ~l~~~~~~~~~tvi~v 193 (235)
T cd03261 178 LIRSLKKELGLTSIMV 193 (235)
T ss_pred HHHHHHHhcCcEEEEE
Confidence 8888876 37777655
No 40
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.1e-24 Score=185.84 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=102.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------------CCCCCCcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------------~~~~y~~~~~i~~~i~--------- 58 (268)
.+++|||||||||||++++++|+++|++|+|.+.|.|... +....++.+|+-|++.
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 5799999999999999999999999999999999987632 2333366788877764
Q ss_pred -------------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCH
Q 024360 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (268)
Q Consensus 59 -------------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~ 112 (268)
+.++++.+||.+. .+...++++ +.||+||+. +|++|+||||.+ +.+
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~------a~~~A~~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~ 182 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGEL------ADRPAGNLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNP 182 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchh------hcchhhcCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCH
Confidence 4567778888876 344443332 899999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 113 FTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 113 ~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
....++. ++++++++. |.++++|
T Consensus 183 ~e~~~l~-~~i~~i~~~~g~tillI 206 (250)
T COG0411 183 EETEELA-ELIRELRDRGGVTILLI 206 (250)
T ss_pred HHHHHHH-HHHHHHHhcCCcEEEEE
Confidence 9999998 999999874 6888766
No 41
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=6.4e-23 Score=176.86 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=95.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999876421 12333 23456776653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~ 178 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHK------HRALPAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NL 178 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHH------hhCChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HH
Confidence 3456777777543 23333333 2899999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++++.+++++
T Consensus 179 l~~~~~~~~tiiiv 192 (214)
T cd03292 179 LKKINKAGTTVVVA 192 (214)
T ss_pred HHHHHHcCCEEEEE
Confidence 88887667777665
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.3e-24 Score=187.34 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=105.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------CCCCCC-Cc-------ccChhhhhh---------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-PV-------AMDIRELIS--------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------~~~~~y-~~-------~~~i~~~i~--------- 58 (268)
.++|+||||||||||+++++|+++|++|.|.++|.+.. .+.++| .| .-+|.+-+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~ 111 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence 68999999999999999999999999999999998743 122333 11 224444433
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++... .++.+.++| ++||.+|+. +|+++||||||+ ||+..++.++ ++++
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~------~~r~p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~ 182 (235)
T COG1122 112 REEIEERVAEALELVGLEEL------LDRPPFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLK 182 (235)
T ss_pred HHHHHHHHHHHHHHcCchhh------ccCCccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 6788889999876 356665555 999999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 125 HLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++ |.++|++ +|.+.....++
T Consensus 183 ~L~~~~~~tii~~----tHd~~~~~~~a 206 (235)
T COG1122 183 KLKEEGGKTIIIV----THDLELVLEYA 206 (235)
T ss_pred HHHhcCCCeEEEE----eCcHHHHHhhC
Confidence 99876 5777655 46555444444
No 43
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=8.3e-23 Score=175.67 Aligned_cols=125 Identities=15% Similarity=0.192 Sum_probs=96.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR 106 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence 4689999999999999999999999999999999976531 12222 33567777653
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCC
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~ 131 (268)
+.++++.+++... .+..+..+| ++||++++. +|+++|+||||+ ||+.++..+. ++++++++.+.
T Consensus 107 ~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 177 (208)
T cd03268 107 IDEVLDVVGLKDS------AKKKVKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGI 177 (208)
T ss_pred HHHHHHHcCCHHH------HhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCC
Confidence 4556777777653 233333332 899999999 999999999999 9999998888 88888876677
Q ss_pred eEEEE
Q 024360 132 NVCAV 136 (268)
Q Consensus 132 ~ii~v 136 (268)
+++++
T Consensus 178 tii~~ 182 (208)
T cd03268 178 TVLIS 182 (208)
T ss_pred EEEEE
Confidence 77655
No 44
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=8e-23 Score=185.82 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=104.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+.| ++.+++++++.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 108 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999977532 12333 34567777764
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++++.+|+.+. ++.....+| +.||++++. +|+++|+|||++ ||+.+++.+. ++++.+
T Consensus 109 ~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~ 179 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRPE------QHKKIGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNI 179 (301)
T ss_pred HHHHHHHHHHHHCCCchH------hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHh
Confidence 3456777888764 233333333 899999999 999999999999 9999998888 888888
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
++ +.+++++ +|.+.+...+|+
T Consensus 180 ~~-~~tiii~----sH~l~~~~~~~d 200 (301)
T TIGR03522 180 GK-DKTIILS----THIMQEVEAICD 200 (301)
T ss_pred cC-CCEEEEE----cCCHHHHHHhCC
Confidence 64 6666544 677776666664
No 45
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=1.1e-23 Score=184.29 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=99.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999876421 12333 23456666542
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
+.++++.+++.+. ++..+..+ +++||++++. +|+++|+||||+ ||+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~ 178 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADL------ADRPAGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEE 178 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccch------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHH
Confidence 3455666777543 23333332 3899999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 115 ~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+..+. ++++++++.+.+++++ +|...+...++
T Consensus 179 ~~~l~-~~l~~~~~~~~tii~v----sH~~~~~~~~~ 210 (236)
T cd03219 179 TEELA-ELIRELRERGITVLLV----EHDMDVVMSLA 210 (236)
T ss_pred HHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhC
Confidence 98888 8888887667777655 45544333333
No 46
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.9e-23 Score=190.73 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=100.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+.+.| ++.+++++++.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence 468999999999999999999999999999999997642 223333 45678888764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.++|.+. ++..+.++| ++|||+|+. +|+++|||||++ ||+.++..+. +.++++.
T Consensus 111 ~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~ 181 (356)
T PRK11650 111 IEERVAEAARILELEPL------LDRKPRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLH 181 (356)
T ss_pred HHHHHHHHHHHcCChhH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 4567788888765 344444433 999999999 999999999999 9999998888 7788886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ |.++++|
T Consensus 182 ~~~g~tii~v 191 (356)
T PRK11650 182 RRLKTTSLYV 191 (356)
T ss_pred HhcCCEEEEE
Confidence 54 7887766
No 47
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.89 E-value=7.7e-23 Score=176.24 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=95.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-------CcccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-------~~~~~i~~~i~-------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 478999999999999999999999999999999987542 122333 22356666553
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. ++..+.++| ++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~ 177 (213)
T cd03262 107 MSKAEAEERALELLEKVGLADK------ADAYPAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DV 177 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHhH------hhhCccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HH
Confidence 3456667777543 233333333 999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++.+.+++++
T Consensus 178 l~~~~~~~~tvi~~ 191 (213)
T cd03262 178 MKDLAEEGMTMVVV 191 (213)
T ss_pred HHHHHHcCCEEEEE
Confidence 99887667777655
No 48
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=9.9e-23 Score=177.91 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999875421 12333 23456776654
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+|||++ ||+.+++.+. ++++
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~ 177 (232)
T cd03218 107 KKEREEKLEELLEEFHITHL------RKSKASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIK 177 (232)
T ss_pred HHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHH
Confidence 3456667777543 22222222 3899999999 999999999999 9999998888 8888
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++.+.+++++
T Consensus 178 ~~~~~~~tii~~ 189 (232)
T cd03218 178 ILKDRGIGVLIT 189 (232)
T ss_pred HHHHCCCEEEEE
Confidence 887667777655
No 49
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-23 Score=175.69 Aligned_cols=133 Identities=24% Similarity=0.398 Sum_probs=104.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------------CCCCCCcccChhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELI----------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------------~~~~y~~~~~i~~~i----------- 57 (268)
-++++|||||||||||+.+++.+++.++|+|++.|++.+. +...+...+|||+.+
T Consensus 28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR 107 (252)
T COG4604 28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR 107 (252)
T ss_pred ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence 4789999999999999999999999999999999988632 111122234555544
Q ss_pred -------hHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 58 -------SLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 58 -------~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
.+++.++.++|.+. .+++..++| ..+|..+++ +.+|++||||.+ ||......+| +++
T Consensus 108 lt~eD~~~I~~aieyl~L~~l------~dryLd~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~L 178 (252)
T COG4604 108 LTKEDRRIINEAIEYLHLEDL------SDRYLDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KIL 178 (252)
T ss_pred CchHHHHHHHHHHHHhcccch------HHHhHHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHH
Confidence 38899999999876 244444433 789999999 999999999999 9999999999 999
Q ss_pred HHHHhC-CCeEEEEEeccccccc
Q 024360 124 DHLKSR-NFNVCAVYLLDSQFIT 145 (268)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~ 145 (268)
++++++ |+++++| ++|-++.+
T Consensus 179 rrla~el~KtiviV-lHDINfAS 200 (252)
T COG4604 179 RRLADELGKTIVVV-LHDINFAS 200 (252)
T ss_pred HHHHHHhCCeEEEE-EecccHHH
Confidence 999865 7777655 56766644
No 50
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=2.5e-23 Score=182.06 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=98.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC---------CCCCCcccChhhhhh---------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE---------NFDYPVAMDIRELIS--------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~---------~~~y~~~~~i~~~i~--------------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.... ...+.+..++++++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 47899999999999999999999999999999998764321 111123456666543
Q ss_pred ---HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 59 ---~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+.++++.+++... .+..+..+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++
T Consensus 92 ~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~ 162 (230)
T TIGR01184 92 RAIVEEHIALVGLTEA------ADKRPGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWE 162 (230)
T ss_pred HHHHHHHHHHcCCHHH------HcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHH
Confidence 3445666777543 23333332 3899999999 999999999999 9999999888 88888765
Q ss_pred C-CCeEEEEEecccccccCHHHHH
Q 024360 129 R-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+ +.+++++ +|...+...++
T Consensus 163 ~~~~tii~~----sH~~~~~~~~~ 182 (230)
T TIGR01184 163 EHRVTVLMV----THDVDEALLLS 182 (230)
T ss_pred hcCCEEEEE----eCCHHHHHHhc
Confidence 4 7777655 35544434444
No 51
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-22 Score=177.95 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=96.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999976521 22333 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+|+.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (233)
T PRK11629 116 KKKPAEINSRALEMLAAVGLEHR------ANHRPSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-Q 186 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 3466777888653 22333222 3899999999 999999999999 9999998888 8
Q ss_pred HHHHHHh-CCCeEEEE
Q 024360 122 FVDHLKS-RNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v 136 (268)
+++++++ .|.+++++
T Consensus 187 ~l~~~~~~~g~tvii~ 202 (233)
T PRK11629 187 LLGELNRLQGTAFLVV 202 (233)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 8888865 47777655
No 52
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.89 E-value=1.2e-22 Score=188.41 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=105.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+.+.| ++.+++++++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 468999999999999999999999999999999987642 222332 45678888765
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.++|.+. ++..+.++| ++|||+|+. +|+++|||||++ ||...+..+. ..++++.
T Consensus 111 ~~~~~~~~l~~l~L~~~------~~~~~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~ 181 (353)
T TIGR03265 111 VAERVAELLDLVGLPGS------ERKYPGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQ 181 (353)
T ss_pred HHHHHHHHHHHcCCCch------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 5678888898775 344444433 999999999 999999999999 9999998888 7788876
Q ss_pred hC-CCeEEEEEecccccccCHHHHH
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++ +.++++| +|...+...++
T Consensus 182 ~~~~~tvi~v----THd~~ea~~l~ 202 (353)
T TIGR03265 182 RRLGVTTIMV----THDQEEALSMA 202 (353)
T ss_pred HhcCCEEEEE----cCCHHHHHHhC
Confidence 54 7787666 35544433333
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=9.6e-23 Score=175.77 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=95.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999876421 12333 22456776653
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+..+ +++||++++. +|+++|+|||++ ||+.+++.+. +++++++
T Consensus 107 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 177 (213)
T cd03301 107 IDERVREVAELLQIEHL------LDRKPKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQ 177 (213)
T ss_pred HHHHHHHHHHHcCCHHH------HhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456677777543 23333333 2899999999 999999999999 9999999888 8888887
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 178 ~~~~~tvi~~ 187 (213)
T cd03301 178 QRLGTTTIYV 187 (213)
T ss_pred HHcCCEEEEE
Confidence 54 7777655
No 54
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=1.3e-22 Score=176.87 Aligned_cols=125 Identities=18% Similarity=0.066 Sum_probs=96.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--CCCCCCcccChhhhhh----------------HHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--~~~~y~~~~~i~~~i~----------------~~~~m~ 64 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++++++. +.++++
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999876431 2233455667777653 234556
Q ss_pred HhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 65 ELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+++.+. ++..+..+ +++||++++. +|+++|+|||++ ||+.+++.+. ++++.+++++.+++++
T Consensus 129 ~~~l~~~------~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~ 198 (224)
T cd03220 129 FSELGDF------IDLPVKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV 198 (224)
T ss_pred HcCChhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 6677553 23333333 2899999999 999999999999 9999998888 8888886667777655
No 55
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.89 E-value=1.1e-22 Score=174.31 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=96.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------~ 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++. +
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV 106 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence 4789999999999999999999999999999999876531 12222 23467777653 4
Q ss_pred HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCe
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
+++++.+++.+.. +....+ .++++|++++. +|+++|+|||++ ||+.+++.+. ++++++++.+.+
T Consensus 107 ~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~t 177 (201)
T cd03231 107 EEALARVGLNGFE------DRPVAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGM 177 (201)
T ss_pred HHHHHHcCChhhh------cCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 6677888886531 222222 23899999999 999999999999 9999999888 888888766777
Q ss_pred EEEE
Q 024360 133 VCAV 136 (268)
Q Consensus 133 ii~v 136 (268)
++++
T Consensus 178 iii~ 181 (201)
T cd03231 178 VVLT 181 (201)
T ss_pred EEEE
Confidence 7655
No 56
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-22 Score=174.72 Aligned_cols=136 Identities=21% Similarity=0.276 Sum_probs=99.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 104 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE 104 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence 4789999999999999999999999999999999876421 12222 23356666542
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. .+..+..+| +.||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 105 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 175 (211)
T cd03298 105 DRQAIEVALARVGLAGL------EKRLPGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLH 175 (211)
T ss_pred HHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456777777643 233333332 899999999 999999999999 9999998888 8888886
Q ss_pred h-CCCeEEEEEecccccccCHHHHH
Q 024360 128 S-RNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+ .+.+++++ +|...+...++
T Consensus 176 ~~~~~tii~~----sH~~~~~~~~~ 196 (211)
T cd03298 176 AETKMTVLMV----THQPEDAKRLA 196 (211)
T ss_pred HhcCCEEEEE----ecCHHHHHhhh
Confidence 5 37777665 35544333333
No 57
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=8.9e-23 Score=189.70 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=105.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.+.| .+.+|+++++.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999999999999997653 223433 44678888764
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+||... .+..+.++| ++|||+|+. +|+++|+|||++ ||+.++..+. +
T Consensus 100 ~~~~~~~~~~~~~~l~~vgL~~~------~~~~p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~ 170 (363)
T TIGR01186 100 GWPEQERKEKALELLKLVGLEEY------EHRYPDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-D 170 (363)
T ss_pred CCCHHHHHHHHHHHHHhcCCchh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 4567788888654 344444433 999999999 999999999999 9999999888 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++.+++++ +.|++++ +|.+.+...++
T Consensus 171 ~l~~l~~~~~~Tii~v----THd~~ea~~~~ 197 (363)
T TIGR01186 171 ELKKLQATLQKTIVFI----THDLDEAIRIG 197 (363)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 88888654 7787766 35544333333
No 58
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.6e-23 Score=188.84 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=102.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999976531 23333 23467777654
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+|+.+. .+..+.++ +++||++|+. +|+++|+||||+ ||+.++..++ ++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~ 182 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDK------ADRYPAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-EL 182 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 3456777888654 23333333 3999999999 999999999999 9999999888 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++ |.+++++ +|.+.....++
T Consensus 183 L~~l~~~~g~tiilv----tH~~~~i~~~~ 208 (343)
T PRK11153 183 LKDINRELGLTIVLI----THEMDVVKRIC 208 (343)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 9988754 7777655 45554444444
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=8.9e-23 Score=178.42 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876421 22333 23457776653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~ 182 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDK------ADAYPAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-AL 182 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhh------hhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HH
Confidence 3456677777643 22222222 3999999999 999999999999 9999998888 88
Q ss_pred HHHHHhC-CCeEEEE
Q 024360 123 VDHLKSR-NFNVCAV 136 (268)
Q Consensus 123 l~~l~~~-~~~ii~v 136 (268)
++.++++ |.+++++
T Consensus 183 l~~~~~~~~~tvii~ 197 (233)
T cd03258 183 LRDINRELGLTIVLI 197 (233)
T ss_pred HHHHHHHcCCEEEEE
Confidence 8888754 7777655
No 60
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=1.3e-22 Score=190.83 Aligned_cols=137 Identities=19% Similarity=0.281 Sum_probs=102.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ..+.| +..+++++++.
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 4789999999999999999999999999999999976532 12222 23455655442
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
++++++.+++.+. .+....+ ++++||++|++ +|+++||||||+ ||+.++..++ +
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~------~~~~~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~ 180 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQF------ADRPVTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-E 180 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-H
Confidence 4667788888754 2333333 33999999999 999999999999 9999999888 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccCHHHHHH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++++++.+++++ +|.+.+...+++
T Consensus 181 lL~~l~~~g~TIIiv----sHdl~~~~~~ad 207 (402)
T PRK09536 181 LVRRLVDDGKTAVAA----IHDLDLAARYCD 207 (402)
T ss_pred HHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 999997667777655 344444444443
No 61
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=1.5e-22 Score=175.47 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999876421 22333 23456776653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~ 182 (221)
T TIGR02211 112 KKSVKEAKERAYEMLEKVGLEHR------INHRPSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-D 182 (221)
T ss_pred CCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-H
Confidence 3456777787653 23333332 3999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
++++++++ +.+++++
T Consensus 183 ~l~~~~~~~~~tii~~ 198 (221)
T TIGR02211 183 LMLELNRELNTSFLVV 198 (221)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 88888654 6777655
No 62
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.8e-22 Score=179.38 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=99.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--CCCCC-------CcccChhhhhh---------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--~~~~y-------~~~~~i~~~i~--------------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence 4789999999999999999999999999999999876521 11222 23356666543
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-C
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~ 129 (268)
+.++++.+++.+. ++..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .
T Consensus 108 ~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~ 178 (255)
T PRK11248 108 IAHQMLKKVGLEGA------EKRYIWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQET 178 (255)
T ss_pred HHHHHHHHcCChhH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhc
Confidence 3456777787643 22333333 3899999999 999999999999 9999998888 88888854 4
Q ss_pred CCeEEEEEecccccccCHHHHH
Q 024360 130 NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
|.+++++ +|.......++
T Consensus 179 g~tviiv----sH~~~~~~~~~ 196 (255)
T PRK11248 179 GKQVLLI----THDIEEAVFMA 196 (255)
T ss_pred CCEEEEE----eCCHHHHHHhC
Confidence 7777655 35544333333
No 63
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.4e-23 Score=176.95 Aligned_cols=137 Identities=17% Similarity=0.297 Sum_probs=109.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-Cc------ccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~~------~~~i~~~i~--------- 58 (268)
.++|++|||||||||.+.++.|+.+|++|+|.+++.|... -.++| +| .++|++++.
T Consensus 31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d 110 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110 (243)
T ss_pred cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence 5899999999999999999999999999999999998743 34566 33 567777765
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+++++++|++.+.. +.....+| +.|||+|+. +|++++||||++ +||.+..++- ++
T Consensus 111 ~~~~~~~~~l~~LL~ef~i~hlr------~~~a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~i 181 (243)
T COG1137 111 LKKAERKEELDALLEEFHITHLR------DSKAYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RI 181 (243)
T ss_pred hhHHHHHHHHHHHHHHhchHHHh------cCcccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HH
Confidence 45788888887642 22222232 999999999 999999999999 9999999988 99
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHHHH
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
++.|+.+|..|+ +.-|...+--.+|+
T Consensus 182 I~~L~~rgiGvL----ITDHNVREtL~i~d 207 (243)
T COG1137 182 IKHLKDRGIGVL----ITDHNVRETLDICD 207 (243)
T ss_pred HHHHHhCCceEE----EccccHHHHHhhhh
Confidence 999998888874 44577666555554
No 64
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=1.4e-22 Score=175.99 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=95.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 4689999999999999999999999999999999876421 12333 23456666653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~ 179 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDK------AKNFPIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RL 179 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhh------hhCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HH
Confidence 2356677777653 23333333 3899999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++++.+++++
T Consensus 180 l~~~~~~~~tiii~ 193 (222)
T PRK10908 180 FEEFNRVGVTVLMA 193 (222)
T ss_pred HHHHHHCCCEEEEE
Confidence 88887667777655
No 65
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=1.9e-22 Score=174.05 Aligned_cols=125 Identities=20% Similarity=0.389 Sum_probs=92.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCC-C--------cccChhhhhh-------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-P--------VAMDIRELIS------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y-~--------~~~~i~~~i~------------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| + ...++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 478999999999999999999999999999999987541 112222 1 1245555542
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~ 176 (213)
T cd03235 106 SKADKAKVDEALERVGLSEL------ADRQIGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLR 176 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 3456666777543 23333333 3999999999 999999999999 9999998888 8888
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++++.+++++
T Consensus 177 ~~~~~~~tvi~~ 188 (213)
T cd03235 177 ELRREGMTILVV 188 (213)
T ss_pred HHHhcCCEEEEE
Confidence 887667777655
No 66
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-22 Score=181.59 Aligned_cols=136 Identities=20% Similarity=0.217 Sum_probs=100.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999865421 12333 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. ++..+.++| ++||++++. +|+++|||||++ ||+.++..+. +
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~ 201 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGW------EHKYPDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-D 201 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhH------hhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 3456777887653 233333333 899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++.++ |.+++++ +|...+...++
T Consensus 202 ~l~~~~~~~g~tiii~----tH~~~~~~~~~ 228 (269)
T cd03294 202 ELLRLQAELQKTIVFI----THDLDEALRLG 228 (269)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhc
Confidence 88888654 6777655 45544333333
No 67
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=3.3e-22 Score=171.76 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=96.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCC-------CCcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~-------y~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+. +.+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 107 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD 107 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence 4789999999999999999999999999999999876421 1122 233467777653
Q ss_pred --HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 59 --~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
++++++.+|+.+. .+.....+| ++||++++. +|+++|+|||++ ||+.++..+. ++++++++.
T Consensus 108 ~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 178 (204)
T PRK13538 108 EALWEALAQVGLAGF------EDVPVRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQ 178 (204)
T ss_pred HHHHHHHHHcCCHHH------hhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHC
Confidence 3457777787643 233333332 899999999 999999999999 9999998888 888888766
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
+.+++++
T Consensus 179 ~~tiii~ 185 (204)
T PRK13538 179 GGMVILT 185 (204)
T ss_pred CCEEEEE
Confidence 7777655
No 68
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-22 Score=173.50 Aligned_cols=123 Identities=22% Similarity=0.306 Sum_probs=93.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh------------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~------------ 58 (268)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999999999999999976531 12222 23457776653
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 107 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 177 (211)
T cd03264 107 VKARVDEVLELVNLGDR------AKKKIGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELG 177 (211)
T ss_pred HHHHHHHHHHHCCCHHH------HhCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHh
Confidence 2445667777543 23333333 3999999999 999999999999 9999998888 8899887
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.+++++
T Consensus 178 ~-~~tii~v 185 (211)
T cd03264 178 E-DRIVILS 185 (211)
T ss_pred C-CCEEEEE
Confidence 5 4666555
No 69
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=5.9e-23 Score=178.07 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=97.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+.+++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 106 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA 106 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence 4789999999999999999999999999999999875421 22333 23457777654
Q ss_pred -----HHHHHHHh-CCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 -----~~~~m~~~-~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++++.+ ++... ++..+.++ ++.||++++. +|+++|+|||++ ||+.++..++ +++++
T Consensus 107 ~~~~~~~~~l~~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 177 (222)
T cd03224 107 KRKARLERVYELFPRLKER------RKQLAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRE 177 (222)
T ss_pred hHHHHHHHHHHHHHhhhhh------hhCchhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHH
Confidence 12344444 34322 22222222 2899999999 999999999999 9999998888 88888
Q ss_pred HHhCCCeEEEEEecccccccCHHHHH
Q 024360 126 LKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++.+.+++++ +|...+...++
T Consensus 178 ~~~~~~tiii~----sH~~~~~~~~~ 199 (222)
T cd03224 178 LRDEGVTILLV----EQNARFALEIA 199 (222)
T ss_pred HHHCCCEEEEE----eCCHHHHHHhc
Confidence 87667777655 35544333433
No 70
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.3e-22 Score=173.76 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=94.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999999999999999887542 112333 22456766553
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++... .+..+..+ ++.||++++. +|+++|+||||+ ||+.+++.+. +++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l 174 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHL------LNRYPAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PEL 174 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhH------hhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 3456777777543 22333222 3899999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEE
Q 024360 124 DHLKSR-NFNVCAV 136 (268)
Q Consensus 124 ~~l~~~-~~~ii~v 136 (268)
++++++ |.+++++
T Consensus 175 ~~~~~~~~~tiii~ 188 (214)
T cd03297 175 KQIKKNLNIPVIFV 188 (214)
T ss_pred HHHHHHcCcEEEEE
Confidence 888754 7777655
No 71
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.2e-22 Score=176.84 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 4689999999999999999999999999999999876421 22333 22356665543
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l 179 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWL------ADRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWL 179 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhh------hhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 2345667777543 23333222 3899999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEE
Q 024360 124 DHLKSR-NFNVCAV 136 (268)
Q Consensus 124 ~~l~~~-~~~ii~v 136 (268)
++++++ +.+++++
T Consensus 180 ~~~~~~~~~tvii~ 193 (239)
T cd03296 180 RRLHDELHVTTVFV 193 (239)
T ss_pred HHHHHHcCCEEEEE
Confidence 888764 7777655
No 72
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.88 E-value=2.6e-22 Score=173.91 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=94.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999876421 12222 23456766653
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. ++....++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 179 (220)
T cd03263 109 EIKEEVELLLRVLGLTDK------ANKRARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEV 179 (220)
T ss_pred HHHHHHHHHHHHcCCHHH------HhChhhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHH
Confidence 3456677777643 23333332 3999999999 999999999999 9999998888 888888
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
++ +.+++++
T Consensus 180 ~~-~~tii~~ 188 (220)
T cd03263 180 RK-GRSIILT 188 (220)
T ss_pred hc-CCEEEEE
Confidence 65 4666554
No 73
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=188.41 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=97.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.+.| .+.+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 109 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE 109 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence 468999999999999999999999999999999987642 122333 34567887764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++... ++..+.++ +++||++|+. +|+++|||||++ ||+.++..+. ++++++.
T Consensus 110 ~~~~~~~~l~~lgL~~~------~~~~~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~ 180 (369)
T PRK11000 110 INQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLH 180 (369)
T ss_pred HHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 3556778888654 23333333 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 181 ~~~g~tvI~v 190 (369)
T PRK11000 181 KRLGRTMIYV 190 (369)
T ss_pred HHhCCEEEEE
Confidence 54 7777665
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=1.2e-22 Score=178.48 Aligned_cols=136 Identities=19% Similarity=0.268 Sum_probs=98.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----------CCCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----------~~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 478999999999999999999999999999999987642 112333 23456666552
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
+.++++.+++... ++..+.++ +++||++++. +|+++|+|||++ ||+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~ 180 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADK------AYQRADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKT 180 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence 3445667777543 23333333 3999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 115 HVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 115 ~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+..+. ++++++.++ +.+++++ +|.......++
T Consensus 181 ~~~l~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~ 213 (243)
T TIGR02315 181 SKQVM-DYLKRINKEDGITVIIN----LHQVDLAKKYA 213 (243)
T ss_pred HHHHH-HHHHHHHHHcCCEEEEE----eCCHHHHHHhc
Confidence 98888 888888653 6777655 35544333333
No 75
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=2.1e-22 Score=172.71 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=95.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| .+..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 478999999999999999999999999999999987631 112333 23457776653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+....++ ++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 175 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLK------LKQKIYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-D 175 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhh------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-H
Confidence 3456777887543 22333332 2899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++.+.+.+++++
T Consensus 176 ~l~~~~~~~~tii~~ 190 (206)
T TIGR03608 176 LLLELNDEGKTIIIV 190 (206)
T ss_pred HHHHHHhcCCEEEEE
Confidence 888887667777655
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.8e-22 Score=177.32 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=100.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------CCCCC-------CcccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------~~~~y-------~~~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG 107 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 4789999999999999999999999999999999976431 12333 22456666543
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+|+.+. ++..+..+ +++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~ 178 (240)
T PRK09493 108 ASKEEAEKQARELLAKVGLAER------AHHYPSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KV 178 (240)
T ss_pred CCHHHHHHHHHHHHHHcCChHH------HhcChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HH
Confidence 3456777777543 23333332 2899999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++.+++++ +|...+...++
T Consensus 179 l~~~~~~~~tiii~----sH~~~~~~~~~ 203 (240)
T PRK09493 179 MQDLAEEGMTMVIV----THEIGFAEKVA 203 (240)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhC
Confidence 88887667777655 45544333333
No 77
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=5.3e-22 Score=169.97 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=96.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 107 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence 4789999999999999999999999999999999976531 12222 24567877754
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCC
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~ 131 (268)
+.++++.++++.. .+.....+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++++.+.
T Consensus 108 ~~~~l~~~~l~~~------~~~~~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 178 (200)
T PRK13540 108 ITELCRLFSLEHL------IDYPCGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGG 178 (200)
T ss_pred HHHHHHHcCCchh------hhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCC
Confidence 4567777777542 12222222 3899999999 999999999999 9999998888 88888866677
Q ss_pred eEEEE
Q 024360 132 NVCAV 136 (268)
Q Consensus 132 ~ii~v 136 (268)
+++++
T Consensus 179 tiii~ 183 (200)
T PRK13540 179 AVLLT 183 (200)
T ss_pred EEEEE
Confidence 77665
No 78
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.88 E-value=2.1e-22 Score=187.32 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=100.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC--ceEEEeccCCcC-----CCCC-------CCcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~--G~v~i~~~d~~~-----~~~~-------y~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+.+|++ |+|.++|.+... +.+. .++.+++++++.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK 111 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999 999999876421 2222 245678888774
Q ss_pred ------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++++.++|.+. ++..+.++| ++|||+|+. +|+++|||||++ ||+..+..+. +.+++
T Consensus 112 ~~~~~~v~~~l~~~gL~~~------~~~~~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~ 182 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDA------AAHLPAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAA 182 (362)
T ss_pred HHHHHHHHHHHHhcCCCch------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 4567888888765 344444443 999999999 999999999999 9999998888 88888
Q ss_pred HHhC--CCeEEEE
Q 024360 126 LKSR--NFNVCAV 136 (268)
Q Consensus 126 l~~~--~~~ii~v 136 (268)
+.++ |.++++|
T Consensus 183 l~~~~~g~til~v 195 (362)
T TIGR03258 183 LHEELPELTILCV 195 (362)
T ss_pred HHHhCCCCEEEEE
Confidence 8765 6777665
No 79
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=3.7e-22 Score=170.57 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR 106 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence 4689999999999999999999999999999999876421 12222 23467777653
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCC
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~ 130 (268)
+.++++.+++.+. ++..+..+| ++||++++. +|+++|+|||++ ||+.++..+. ++++++++++
T Consensus 107 ~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 177 (198)
T TIGR01189 107 TIEDALAAVGLTGF------EDLPAAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARG 177 (198)
T ss_pred HHHHHHHHcCCHHH------hcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 4456677777653 233333333 899999999 999999999999 9999998887 8888886667
Q ss_pred CeEEEE
Q 024360 131 FNVCAV 136 (268)
Q Consensus 131 ~~ii~v 136 (268)
.+++++
T Consensus 178 ~tii~~ 183 (198)
T TIGR01189 178 GIVLLT 183 (198)
T ss_pred CEEEEE
Confidence 777655
No 80
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.4e-22 Score=172.20 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=110.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------------CCCCCCcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------------~~~~y~~~~~i~~~i~---------- 58 (268)
.+.+|+||||||||||+|.++|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~ 107 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR 107 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence 4689999999999999999999999999999999987621 1212212345555543
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhHHHHHHHHHhcCCC----CCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLD----DDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~----p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
++.+|...++....+--|..-.-.+++++.+||.|++... +++++|||||+ ||+..+...+ ++.+.
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~ 186 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQ 186 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHH
Confidence 5677888887765432222222334455999999997633 35999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
+.++|..+++| ++|-+ =...|++++++...+
T Consensus 187 la~~g~~V~~V-LHDLN---LAA~YaDrivll~~G 217 (259)
T COG4559 187 LAREGGAVLAV-LHDLN---LAAQYADRIVLLHQG 217 (259)
T ss_pred HHhcCCcEEEE-Eccch---HHHHhhheeeeeeCC
Confidence 99888777766 45544 355677665544333
No 81
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=3.5e-22 Score=185.38 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=102.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++.+++++++.
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 4789999999999999999999999999999999976521 22332 34566666553
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++... .+..+..+ +++|||+|+. +|+++|+|||++ ||+.++..+. +.+
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L 179 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHL------ADRYPAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWL 179 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 3456777888654 23443333 3999999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++.++ +.++++| +|...+...++
T Consensus 180 ~~l~~~~g~tii~v----THd~~ea~~~~ 204 (353)
T PRK10851 180 RQLHEELKFTSVFV----THDQEEAMEVA 204 (353)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 888765 7787666 35544433333
No 82
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=181.21 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=101.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-------ccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-------~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~ 111 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD 111 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence 4789999999999999999999999999999999976521 22333 11 236666653
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. .+..+..+| ++||++|+. +|+++|+||||+ ||+.++..++ ++++
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~ 182 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDF------RDKPPYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILD 182 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHH
Confidence 3456777788643 233333333 999999999 999999999999 9999999988 8999
Q ss_pred HHHhCCCeEEEEEecccccccCHHHHH
Q 024360 125 HLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++|.+++++ +|.......++
T Consensus 183 ~~~~~g~tili~----tH~~~~~~~~~ 205 (274)
T PRK13647 183 RLHNQGKTVIVA----THDVDLAAEWA 205 (274)
T ss_pred HHHHCCCEEEEE----eCCHHHHHHhC
Confidence 887667787655 45554433443
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2e-22 Score=176.86 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=98.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 4789999999999999999999999999999999876421 12333 23456666653
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
+.++++.+++.+. .+..+.+ ++++||++++. +|+++|+|||++ ||+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDK------AYQRADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPAS 179 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhh------hCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHH
Confidence 2345666777542 1222222 23999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEEecccccccCHHHH
Q 024360 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 115 ~~~i~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (268)
+..+. ++++++++ .|.+++++ +|.......+
T Consensus 180 ~~~l~-~~l~~~~~~~~~tii~~----tH~~~~~~~~ 211 (241)
T cd03256 180 SRQVM-DLLKRINREEGITVIVS----LHQVDLAREY 211 (241)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 98888 88888865 37777655 3554433333
No 84
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.9e-22 Score=185.76 Aligned_cols=135 Identities=17% Similarity=0.187 Sum_probs=103.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+++.| ++.+|+++++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE 112 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence 478999999999999999999999999999999997642 123332 45678888775
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. +++.+..+ +++|||+|+. +|+++|||||++ ||+..+..+. ..++.+.
T Consensus 113 ~~~~v~~~l~~~gl~~~------~~r~~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 183 (351)
T PRK11432 113 RKQRVKEALELVDLAGF------EDRYVDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQ 183 (351)
T ss_pred HHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3457778888764 23444333 3999999999 999999999999 9999998887 7888886
Q ss_pred hC-CCeEEEEEecccccccCHHHH
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~ 150 (268)
++ +.++++| +|...+...+
T Consensus 184 ~~~g~tii~v----THd~~e~~~l 203 (351)
T PRK11432 184 QQFNITSLYV----THDQSEAFAV 203 (351)
T ss_pred HhcCCEEEEE----cCCHHHHHHh
Confidence 54 7787665 3554433333
No 85
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.88 E-value=5.1e-22 Score=172.61 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=101.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---CCCCC-------CcccChhhhhh------------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---~~~~y-------~~~~~i~~~i~------------~~ 60 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| .+..++++++. +.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 106 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID 106 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 4789999999999999999999999999999998875421 12222 23467777754 35
Q ss_pred HHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 61 DVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 61 ~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
++++.+++.+. .+..+..+| ++||++++. +|+++|+|||++ ||+.++..+. ++++++++.+.++
T Consensus 107 ~~l~~~~l~~~------~~~~~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~ti 177 (223)
T TIGR03740 107 EVLNIVDLTNT------GKKKAKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITV 177 (223)
T ss_pred HHHHHcCCcHH------HhhhHhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 67777888754 233333332 899999999 999999999999 9999998888 8888887667777
Q ss_pred EEEEecccccccCHHHHH
Q 024360 134 CAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 134 i~v~l~d~~~~~d~~~~~ 151 (268)
+++ +|.......++
T Consensus 178 ii~----sH~~~~~~~~~ 191 (223)
T TIGR03740 178 ILS----SHILSEVQQLA 191 (223)
T ss_pred EEE----cCCHHHHHHhc
Confidence 655 45544333444
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-23 Score=189.96 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=96.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------------------------------CCCCCC-Cc-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-PV- 49 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------------------------------~~~~~y-~~- 49 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| ++
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 368999999999999999999999999999999865431 112333 11
Q ss_pred ------ccChhhhhh----------------HHHHHHHhCCC-CCCChhhhHhhhhhhHH------HHHHHHHhcCCCCC
Q 024360 50 ------AMDIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNLD------DWLAEELDNYLDDD 100 (268)
Q Consensus 50 ------~~~i~~~i~----------------~~~~m~~~~L~-~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~ 100 (268)
..++++++. +.++++.+||. +. ++..+..+| ++||++|+. +|+
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~LSgGqkqrvalA~aL~~--~P~ 185 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY------LQRSPFELSGGQKRRVALAGILAM--EPD 185 (305)
T ss_pred cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh------hhCChhhCCHHHHHHHHHHHHHHh--CCC
Confidence 236666653 46778888886 32 233333333 999999999 999
Q ss_pred EEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 101 YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 101 ~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||||||+ ||+.++..++ ++++++++.|.+++++
T Consensus 186 lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv 221 (305)
T PRK13651 186 FLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV 221 (305)
T ss_pred EEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 999999999 9999998888 8899987668887766
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.88 E-value=3.3e-22 Score=178.01 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCC-------CcccChhhhhh----------HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS----------LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y-------~~~~~i~~~i~----------~~~~m 63 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++. +.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 478999999999999999999999999999998775431 122222 33467777754 45677
Q ss_pred HHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCA 135 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~ 135 (268)
+.+++.+. ++..+.++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.++++
T Consensus 119 ~~~gl~~~------~~~~~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tvii 189 (257)
T PRK11247 119 AAVGLADR------ANEWPAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLL 189 (257)
T ss_pred HHcCChhH------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEE
Confidence 88888653 23333333 2999999999 999999999999 9999998888 88888754 4677765
Q ss_pred E
Q 024360 136 V 136 (268)
Q Consensus 136 v 136 (268)
+
T Consensus 190 v 190 (257)
T PRK11247 190 V 190 (257)
T ss_pred E
Confidence 5
No 88
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-22 Score=175.04 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999999999876421 12333 22457776653
Q ss_pred ------HHHHHHHhCCCC--CCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 ------~~~~m~~~~L~~--~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++.+ . .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L 178 (242)
T cd03295 108 EKIRERADELLALVGLDPAEF------ADRYPHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEF 178 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHH------HhcChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHH
Confidence 346677888875 2 12322222 3899999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEE
Q 024360 124 DHLKSR-NFNVCAV 136 (268)
Q Consensus 124 ~~l~~~-~~~ii~v 136 (268)
++++++ |.+++++
T Consensus 179 ~~~~~~~g~tvii~ 192 (242)
T cd03295 179 KRLQQELGKTIVFV 192 (242)
T ss_pred HHHHHHcCCEEEEE
Confidence 888654 7777655
No 89
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=6.6e-22 Score=171.16 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=101.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----CCCCCC-------CcccChhhhhh-------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----~~~~~y-------~~~~~i~~~i~------------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 117 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM 117 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence 368999999999999999999999999999999987542 112333 23457777653
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCC
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~ 131 (268)
+.++++.+++.+. .+..... .+++||++++. +|+++|+|||++ ||+.+++.+. ++++++++++.
T Consensus 118 ~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 188 (214)
T PRK13543 118 PGSALAIVGLAGY------EDTLVRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGG 188 (214)
T ss_pred HHHHHHHcCChhh------ccCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCC
Confidence 2456677777643 1222222 23999999999 999999999999 9999998877 88888877677
Q ss_pred eEEEEEecccccccCHHHHHH
Q 024360 132 NVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++ +|...+...+++
T Consensus 189 tiii~----sH~~~~~~~~~~ 205 (214)
T PRK13543 189 AALVT----THGAYAAPPVRT 205 (214)
T ss_pred EEEEE----ecChhhhhhhcc
Confidence 77655 455555555543
No 90
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=4.4e-22 Score=185.96 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=99.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCC-------CCcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFD-------YPVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~-------y~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+.+|++|+|.+.|.+.. .+.+. +++.+++++++.
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE 120 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence 468999999999999999999999999999999997642 22232 355678888764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++| ++|||+|+. +|+++|||||++ ||...+..+. ..++++.
T Consensus 121 ~~~~~~~~l~~~~l~~~------~~~~p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~ 191 (375)
T PRK09452 121 ITPRVMEALRMVQLEEF------AQRKPHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQ 191 (375)
T ss_pred HHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHH
Confidence 3456777888765 344444433 999999999 999999999999 9999998877 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.++|+|
T Consensus 192 ~~~g~tiI~v 201 (375)
T PRK09452 192 RKLGITFVFV 201 (375)
T ss_pred HhcCCEEEEE
Confidence 54 7787766
No 91
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=3.8e-22 Score=178.47 Aligned_cols=125 Identities=17% Similarity=0.240 Sum_probs=94.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----------CCCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----------~~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 468999999999999999999999999999999986542 112333 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. ++..+..+| ++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 184 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGA------AKLMPSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-K 184 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-H
Confidence 2235667777643 233333333 999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
++++++++ |.+++++
T Consensus 185 ~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 185 LISELNSALGVTCVVV 200 (269)
T ss_pred HHHHHHHhcCcEEEEE
Confidence 88888654 6777655
No 92
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.3e-23 Score=182.25 Aligned_cols=139 Identities=16% Similarity=0.212 Sum_probs=111.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc---CCcC-----CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~---d~~~-----~~~~y-------~~~~~i~~~i~--------- 58 (268)
..++++|||||||||++++|+|+..|+.|.|.++|. |..+ ++++| ++.+||.++|.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~ 108 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER 108 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccC
Confidence 358999999999999999999999999999999998 5432 34443 56788888875
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+.|++.+ +.++.++| +++|||++. +|++|+||||+. ||...+.++- .-
T Consensus 109 p~~~~~r~rv~elL~lvqL~~la------~ryP~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~w 179 (345)
T COG1118 109 PSEAEIRARVEELLRLVQLEGLA------DRYPAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RW 179 (345)
T ss_pred CChhhHHHHHHHHHHHhcccchh------hcCchhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HH
Confidence 67889999998773 55555544 999999999 999999999999 9999887766 66
Q ss_pred HHHHHhC-CCeEEEEEecccccccCHHHHHHHH
Q 024360 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (268)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (268)
++++.++ |.++++| +|...+...+++++
T Consensus 180 Lr~~~~~~~~ttvfV----THD~eea~~ladrv 208 (345)
T COG1118 180 LRKLHDRLGVTTVFV----THDQEEALELADRV 208 (345)
T ss_pred HHHHHHhhCceEEEE----eCCHHHHHhhcceE
Confidence 6776654 8888776 47777666666543
No 93
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.2e-22 Score=180.71 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=101.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-------ccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-------~~~i~~~i~----- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 113 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN 113 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976421 12333 11 246666653
Q ss_pred -----------HHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 -----------~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++. .. .+..+..+ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~ 185 (287)
T PRK13641 114 FGFSEDEAKEKALKWLKKVGLSEDL------ISKSPFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM 185 (287)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhH------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH
Confidence 35567777885 32 12333222 3999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++.+++.|.+++++ +|...+...++
T Consensus 186 -~~l~~l~~~g~tvliv----sH~~~~~~~~~ 212 (287)
T PRK13641 186 -QLFKDYQKAGHTVILV----THNMDDVAEYA 212 (287)
T ss_pred -HHHHHHHhCCCEEEEE----eCCHHHHHHhC
Confidence 8889887667787655 46655444444
No 94
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.4e-22 Score=187.92 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=98.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999976421 23443 33567877764
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.++|.+. .+..+.++| ++||++|+. +|+++|+|||++ ||+.++..+. +
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~------~~~~~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~ 205 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENY------AHSYPDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-D 205 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChh------hhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence 3456778888764 244443333 999999999 999999999999 9999998888 8
Q ss_pred HHHHHHh-CCCeEEEE
Q 024360 122 FVDHLKS-RNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v 136 (268)
+++++++ .+.+++++
T Consensus 206 ~L~~l~~~~g~TIIiv 221 (400)
T PRK10070 206 ELVKLQAKHQRTIVFI 221 (400)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 8888864 47777665
No 95
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.88 E-value=7.3e-22 Score=174.38 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=94.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------------CCCCCC-------CcccChhhhhh--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDY-------PVAMDIRELIS-- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------------~~~~~y-------~~~~~i~~~i~-- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999886532 112232 22456766653
Q ss_pred ---------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 59 ---------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
+.++++.+++.+. .+..+.++ ++.||++++. +|+++|+||||+ ||+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~ 181 (250)
T PRK11264 110 PVIVKGEPKEEATARARELLAKVGLAGK------ETSYPRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVG 181 (250)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcch------hhCChhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHH
Confidence 3455667777643 23333333 2899999999 999999999999 9999998
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 024360 117 PVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v 136 (268)
.+. ++++++.+++.+++++
T Consensus 182 ~l~-~~l~~~~~~~~tvi~~ 200 (250)
T PRK11264 182 EVL-NTIRQLAQEKRTMVIV 200 (250)
T ss_pred HHH-HHHHHHHhcCCEEEEE
Confidence 888 8888887667777655
No 96
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.4e-23 Score=186.95 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-------ccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-------~~~i~~~i~----- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~ 113 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN 113 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence 4689999999999999999999999999999999976521 12344 22 125666553
Q ss_pred -----------HHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 -----------~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+||. +. .+..+.++ +++||++|+. +|+++|+|||++ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~ 185 (286)
T PRK13646 114 FKMNLDEVKNYAHRLLMDLGFSRDV------MSQSPFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM 185 (286)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhh------hhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH
Confidence 34667777875 32 12233222 2999999999 999999999999 9999999888
Q ss_pred HHHHHHHHh-CCCeEEEE
Q 024360 120 RNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~-~~~~ii~v 136 (268)
++++++++ .|.+++++
T Consensus 186 -~~l~~l~~~~g~tvl~v 202 (286)
T PRK13646 186 -RLLKSLQTDENKTIILV 202 (286)
T ss_pred -HHHHHHHHhCCCEEEEE
Confidence 99999875 47888766
No 97
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-22 Score=175.55 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=98.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 4789999999999999999999999999999999976421 11222 22456666543
Q ss_pred ----------------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-
Q 024360 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ- 109 (268)
Q Consensus 59 ----------------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~- 109 (268)
+.++++.+|+.+. ++..+.++| +.||++++. +|+++|+|||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~ 183 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH------ANRQAGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAG 183 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccC
Confidence 2334556666543 233333332 999999999 999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
||+.++..+. +++++++++ +.+++++ +|...+...++
T Consensus 184 LD~~~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~ 221 (255)
T PRK11300 184 LNPKETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGIS 221 (255)
T ss_pred CCHHHHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhC
Confidence 9999998888 888888764 7777655 45554444443
No 98
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=5.1e-22 Score=175.72 Aligned_cols=125 Identities=16% Similarity=0.220 Sum_probs=93.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y~~~~~i~~~i~------------~~~~m~~~~L 68 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|...+ .+........++++++. ..++++.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999875321 12222223456777653 2456777777
Q ss_pred CCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
... ++..+..+| ++||++|+. +|+++|||||++ ||+.++..+. ++++++.+ .+.+++++
T Consensus 106 ~~~------~~~~~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv 172 (246)
T cd03237 106 EQI------LDREVPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV 172 (246)
T ss_pred HHH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 543 233333333 899999999 999999999999 9999998888 88888865 36777655
No 99
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.87 E-value=5.4e-22 Score=171.40 Aligned_cols=125 Identities=20% Similarity=0.308 Sum_probs=94.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 4789999999999999999999999999999999876421 22323 23456666543
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.
T Consensus 105 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~ 175 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADY------LDRLPEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLC 175 (213)
T ss_pred HHHHHHHHHHHcCcHHH------hhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHH
Confidence 3456677777543 23333332 2999999999 999999999999 9999999888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 176 ~~~~~tii~v 185 (213)
T TIGR01277 176 SERQRTLLMV 185 (213)
T ss_pred HhcCCEEEEE
Confidence 54 6777665
No 100
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=185.22 Aligned_cols=125 Identities=15% Similarity=0.271 Sum_probs=98.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| .+.+++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 104 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS 104 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence 478999999999999999999999999999999886532 122333 34568888764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++ +++||++|+. +|+++|||||++ ||+..+..+. ++++++.
T Consensus 105 ~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~ 175 (352)
T PRK11144 105 MVAQFDKIVALLGIEPL------LDRYPGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLA 175 (352)
T ss_pred hHHHHHHHHHHcCCchh------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 4567888888754 23443333 3999999999 999999999999 9999998888 8888887
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 176 ~~~g~tii~v 185 (352)
T PRK11144 176 REINIPILYV 185 (352)
T ss_pred HhcCCeEEEE
Confidence 54 7777655
No 101
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.2e-21 Score=167.15 Aligned_cols=125 Identities=13% Similarity=0.045 Sum_probs=93.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---CCC-------CCCcccChhhhhh-----------HHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENF-------DYPVAMDIRELIS-----------LED 61 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---~~~-------~y~~~~~i~~~i~-----------~~~ 61 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+ .+.+..++++++. +.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 106 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA 106 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence 4789999999999999999999999999999999976421 112 2234567777764 345
Q ss_pred HHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 62 VMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 62 ~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
+++.+++.+. .+.....+ ++.||++++. +|+++|+|||++ +|+.++..+. ++++...+.+.+++
T Consensus 107 ~l~~~~l~~~------~~~~~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tii 177 (195)
T PRK13541 107 AIHYFKLHDL------LDEKCYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVL 177 (195)
T ss_pred HHHHcCCHhh------hccChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 5666777542 22222222 2899999999 999999999999 9999998877 77876655677776
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
++
T Consensus 178 i~ 179 (195)
T PRK13541 178 LS 179 (195)
T ss_pred EE
Confidence 55
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.7e-22 Score=173.92 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=95.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------------CCCCCC-------CcccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-------PVAMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------------~~~~~y-------~~~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 468999999999999999999999999999999987641 112333 22357776653
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+|+.+. ++..+.++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPY------ADRFPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHH
Confidence 3445667777643 23333332 3999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++.+.+++++
T Consensus 181 ~-~~l~~~~~~~~tii~~ 197 (242)
T PRK11124 181 V-SIIRELAETGITQVIV 197 (242)
T ss_pred H-HHHHHHHHcCCEEEEE
Confidence 8 8888887667777655
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=7.9e-22 Score=173.35 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=99.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 4789999999999999999999999999999999976521 12333 23456666542
Q ss_pred ---------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 59 ---------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+||||+ ||+.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~ 180 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADE------ADRLAGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETE 180 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHH
Confidence 3456667777653 23333222 2999999999 999999999999 9999998
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
.+. ++++++++ +.+++++ +|...+...++
T Consensus 181 ~l~-~~l~~~~~-~~tii~~----sH~~~~~~~~~ 209 (242)
T TIGR03411 181 KTA-ELLKSLAG-KHSVVVV----EHDMEFVRSIA 209 (242)
T ss_pred HHH-HHHHHHhc-CCEEEEE----ECCHHHHHHhC
Confidence 888 88888865 5666555 45544444443
No 104
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=179.98 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=96.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------CCCCC-Cc-------ccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------~~~~y-~~-------~~~i~~~i~------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 113 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG 113 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence 4689999999999999999999999999999999976531 12333 11 246777653
Q ss_pred ---------HHHHHHHhCCC--CCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 ---------~~~~m~~~~L~--~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+||. +. .+..+.. ++++||++|+. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~l~~~gL~~~~~------~~~~~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~- 184 (287)
T PRK13637 114 LSEEEIENRVKRAMNIVGLDYEDY------KDKSPFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL- 184 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhh------ccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-
Confidence 45678888886 22 1222222 23999999999 999999999999 9999999988
Q ss_pred HHHHHHHhC-CCeEEEE
Q 024360 121 NFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~-~~~ii~v 136 (268)
+++++++++ |.+++++
T Consensus 185 ~~l~~l~~~~g~tvi~v 201 (287)
T PRK13637 185 NKIKELHKEYNMTIILV 201 (287)
T ss_pred HHHHHHHHhcCCEEEEE
Confidence 999998764 7787666
No 105
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=4.3e-22 Score=184.94 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=97.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+.+++++++.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 478999999999999999999999999999999987542 122333 33567877764
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++.+. ++..+.++ +++||++|+. +|+++|||||++ ||+.++..+. +++
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L 174 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHL------LGRLPGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYL 174 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHH
Confidence 4567778888654 23333333 3999999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEE
Q 024360 124 DHLKSR-NFNVCAV 136 (268)
Q Consensus 124 ~~l~~~-~~~ii~v 136 (268)
++++++ +.+++++
T Consensus 175 ~~l~~~~g~tiiiv 188 (354)
T TIGR02142 175 ERLHAEFGIPILYV 188 (354)
T ss_pred HHHHHhcCCEEEEE
Confidence 888754 7777655
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=1.1e-21 Score=171.99 Aligned_cols=125 Identities=19% Similarity=0.282 Sum_probs=94.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999875421 12223 23456666553
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+|+.+. ++..+.++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 178 (236)
T TIGR03864 108 EARERIAALLARLGLAER------ADDKVRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRAL 178 (236)
T ss_pred HHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHH
Confidence 3456777777643 22332222 3899999999 999999999999 9999999888 888888
Q ss_pred Hh-CCCeEEEE
Q 024360 127 KS-RNFNVCAV 136 (268)
Q Consensus 127 ~~-~~~~ii~v 136 (268)
++ .|.+++++
T Consensus 179 ~~~~~~tiii~ 189 (236)
T TIGR03864 179 CRDQGLSVLWA 189 (236)
T ss_pred HHhCCCEEEEE
Confidence 64 47777655
No 107
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=7.7e-22 Score=171.95 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=94.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999875421 12333 23356666653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++... .+..+..+ ++.||++|+. +|+++|+|||++ ||+.++..+. +
T Consensus 117 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 187 (228)
T PRK10584 117 GESSRQSRNGAKALLEQLGLGKR------LDHLPAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-D 187 (228)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 3456777777643 22222222 3899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
++++++++ +.+++++
T Consensus 188 ~l~~~~~~~~~tii~~ 203 (228)
T PRK10584 188 LLFSLNREHGTTLILV 203 (228)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 88888654 6777655
No 108
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=8.3e-22 Score=173.23 Aligned_cols=125 Identities=16% Similarity=0.275 Sum_probs=93.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL 109 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence 4789999999999999999999999999999999876421 12333 22346655542
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++... .+.....+ +++||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l 180 (241)
T PRK10895 110 SAEQREDRANELMEEFHIEHL------RDSMGQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RII 180 (241)
T ss_pred CHHHHHHHHHHHHHHcCCHHH------hhcchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 3455666666542 12222222 2899999999 999999999999 9999998887 888
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
+.++++|.+++++
T Consensus 181 ~~~~~~g~tiii~ 193 (241)
T PRK10895 181 EHLRDSGLGVLIT 193 (241)
T ss_pred HHHHhcCCEEEEE
Confidence 8887667777655
No 109
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.87 E-value=7.5e-22 Score=171.92 Aligned_cols=125 Identities=17% Similarity=0.304 Sum_probs=94.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCC-C--------cccChhhhh--------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-P--------VAMDIRELI-------------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y-~--------~~~~i~~~i-------------- 57 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| + ...++++++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 478999999999999999999999999999999997652 122222 1 123454442
Q ss_pred ------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 58 ------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
.+.++++.+++.+.. +..+..+ +++||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~ 157 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELA------DRPVGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFI 157 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhh------cCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 145567778887542 3333222 3899999999 999999999999 9999999888 8888
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++++.+++++
T Consensus 158 ~~~~~~~tvii~ 169 (223)
T TIGR03771 158 ELAGAGTAILMT 169 (223)
T ss_pred HHHHcCCEEEEE
Confidence 887667777655
No 110
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.87 E-value=8e-22 Score=171.48 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=92.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC---------CcccChhhhhhH----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELISL---- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y---------~~~~~i~~~i~~---- 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999876421 12332 224566666530
Q ss_pred --------------HHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 60 --------------EDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 60 --------------~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
.++++.+++. +. .+..+.++ +++||++++. +|+++|+||||+ ||+.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 183 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLPEEV------LNRYPHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQ 183 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCChhH------hhCCchhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHH
Confidence 2455666663 22 12332222 3899999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhC-CCeEEEE
Q 024360 118 VLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~-~~~ii~v 136 (268)
+. +++++++++ |.+++++
T Consensus 184 l~-~~l~~~~~~~~~tii~~ 202 (228)
T cd03257 184 IL-DLLKKLQEELGLTLLFI 202 (228)
T ss_pred HH-HHHHHHHHHcCCEEEEE
Confidence 88 888888764 7777655
No 111
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.4e-21 Score=168.23 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=95.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----CCCCCC-------CcccChhhhhh------------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS------------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----~~~~~y-------~~~~~i~~~i~------------~ 59 (268)
.+++|+||||||||||+++|+|+.+|++|+|.+.|.+.. ...+.| .+..++++++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 478999999999999999999999999999999987632 111222 23457777653 4
Q ss_pred HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCe
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
.++++.+++.+. .+..... .++.||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+
T Consensus 109 ~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~t 179 (207)
T PRK13539 109 AAALEAVGLAPL------AHLPFGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGI 179 (207)
T ss_pred HHHHHHcCCHHH------HcCChhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCE
Confidence 567777887543 1222222 23899999999 999999999999 9999999888 888887766777
Q ss_pred EEEE
Q 024360 133 VCAV 136 (268)
Q Consensus 133 ii~v 136 (268)
++++
T Consensus 180 iii~ 183 (207)
T PRK13539 180 VIAA 183 (207)
T ss_pred EEEE
Confidence 7655
No 112
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.87 E-value=1.1e-21 Score=172.33 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=93.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC--------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y--------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999999998865321 12222 23456666543
Q ss_pred ------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++++.+++.+. .+.....+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++.
T Consensus 128 ~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 198 (236)
T cd03267 128 ARFKKRLDELSELLDLEEL------LDTPVRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKE 198 (236)
T ss_pred HHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 2345666676542 22222222 2899999999 999999999999 9999999888 88888
Q ss_pred HHhC-CCeEEEE
Q 024360 126 LKSR-NFNVCAV 136 (268)
Q Consensus 126 l~~~-~~~ii~v 136 (268)
++++ +.+++++
T Consensus 199 ~~~~~~~tiiiv 210 (236)
T cd03267 199 YNRERGTTVLLT 210 (236)
T ss_pred HHhcCCCEEEEE
Confidence 8654 6777655
No 113
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=7.4e-22 Score=169.88 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=97.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhhHH-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLE------- 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~~~------- 60 (268)
.+++|+||||+|||||+++|+|+.++.+|+|.+.|.|... ..+.| ++.+||+||+.+-
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~ 109 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK 109 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence 5799999999999999999999999999999999998743 23333 4578888887521
Q ss_pred ----H-HHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 ----D-VMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ----~-~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
. +=+-|.+-|..... .+...+.+| .+|||||+. +|++++||||+. |-|....+++ +.++++++
T Consensus 110 ~~~~~~~e~v~~lFP~Lker--~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~ 184 (237)
T COG0410 110 EAQERDLEEVYELFPRLKER--RNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRK 184 (237)
T ss_pred ccccccHHHHHHHChhHHHH--hcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHH
Confidence 0 11233444431111 233333333 899999999 999999999999 9999999999 99999986
Q ss_pred C-CCeEEEE
Q 024360 129 R-NFNVCAV 136 (268)
Q Consensus 129 ~-~~~ii~v 136 (268)
+ +.+|+.|
T Consensus 185 ~~g~tIlLV 193 (237)
T COG0410 185 EGGMTILLV 193 (237)
T ss_pred cCCcEEEEE
Confidence 5 6677766
No 114
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.2e-22 Score=178.94 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=99.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-------ccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-------~~~i~~~i~----- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~ 112 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN 112 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence 3689999999999999999999999999999999976521 12333 11 135666553
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+++.+.- .+..+.. .+++||++|+. +|+++||||||+ ||+.+++.+.
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~- 184 (288)
T PRK13643 113 FGIPKEKAEKIAAEKLEMVGLADEF-----WEKSPFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM- 184 (288)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhh-----ccCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-
Confidence 45667777885310 1222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++|.+++++ +|...+...++
T Consensus 185 ~~l~~l~~~g~til~v----tHd~~~~~~~~ 211 (288)
T PRK13643 185 QLFESIHQSGQTVVLV----THLMDDVADYA 211 (288)
T ss_pred HHHHHHHHCCCEEEEE----ecCHHHHHHhC
Confidence 8899987667887666 35544333333
No 115
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.5e-22 Score=177.72 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=112.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-----------Cc---ccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----------PV---AMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-----------~~---~~~i~~~i~---------- 58 (268)
-+++++|||||||||++|+++|++.|++|+|.+.|++|..+.-.| .+ +..+.+.+.
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd 130 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence 478999999999999999999999999999999999996532111 00 111222222
Q ss_pred ------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 ------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
.+.+-+.+++++. ++..... ++..||.+|.+ +|++++|||||- ||..++..+. ++++.
T Consensus 131 ~~F~~r~~~l~eiLdl~~~------lk~~vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke 201 (325)
T COG4586 131 DEFAERLDFLTEILDLEGF------LKWPVRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKE 201 (325)
T ss_pred HHHHHHHHHHHHHhcchhh------hhhhhhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHH
Confidence 3445555677654 2333333 34889999999 999999999999 9999998877 99999
Q ss_pred HHhC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhc
Q 024360 126 LKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (268)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (268)
.++. +.||+ ..+|++.|....|.++++...+.+..+
T Consensus 202 ~n~~~~aTVl----lTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 202 YNEERQATVL----LTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHhhCceEE----EEecchhhHHHhhhheEEeeCCcEeec
Confidence 8754 77774 568999999999988876666655554
No 116
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=9.5e-22 Score=172.01 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 4789999999999999999999999999999999876421 12333 22346666543
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. .+..+..+| +.||++++. +|+++|+|||++ ||+.++..+. ++++.+.
T Consensus 106 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~ 176 (232)
T PRK10771 106 QREKLHAIARQMGIEDL------LARLPGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVC 176 (232)
T ss_pred HHHHHHHHHHHcCcHHH------HhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 3455666777543 233333332 899999999 999999999999 9999998888 8888886
Q ss_pred h-CCCeEEEE
Q 024360 128 S-RNFNVCAV 136 (268)
Q Consensus 128 ~-~~~~ii~v 136 (268)
+ .+.+++++
T Consensus 177 ~~~~~tiii~ 186 (232)
T PRK10771 177 QERQLTLLMV 186 (232)
T ss_pred HhcCCEEEEE
Confidence 5 37777655
No 117
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.7e-22 Score=177.38 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-------ccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-------~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 113 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN 113 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 4789999999999999999999999999999999875421 12333 11 236666553
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+++.+.. .+....+ +++.||++++. +|+++|+||||+ ||+.+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 185 (280)
T PRK13649 114 FGVSQEEAEALAREKLALVGISESL-----FEKNPFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM- 185 (280)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhh-----hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23456677775310 1222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEE
Q 024360 121 NFVDHLKSRNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (268)
++++++++.+.+++++
T Consensus 186 ~~l~~~~~~~~tiiiv 201 (280)
T PRK13649 186 TLFKKLHQSGMTIVLV 201 (280)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8888887667777655
No 118
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.7e-22 Score=178.88 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=100.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-------ccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-------~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 22333 11 246666653
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.++|.+.. ++..+.. ++++||++|+. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~- 185 (290)
T PRK13634 114 FGVSEEDAKQKAREMIELVGLPEEL-----LARSPFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM- 185 (290)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChhh-----hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-
Confidence 45677788886321 1222322 23999999999 999999999999 9999999888
Q ss_pred HHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 121 NFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 121 ~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++ |.+++++ +|.......++
T Consensus 186 ~~L~~l~~~~g~tviii----tHd~~~~~~~~ 213 (290)
T PRK13634 186 EMFYKLHKEKGLTTVLV----THSMEDAARYA 213 (290)
T ss_pred HHHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 889998754 7787665 45544444443
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=1e-21 Score=174.47 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------------------CCCCCC-------CcccChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------------------~~~~~y-------~~~~~i~~ 55 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.+.| .+..++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 478999999999999999999999999999999986542 122333 22357777
Q ss_pred hhh-----------------HHHHHHHhCCCCCCChhhhHhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
++. +.++++.+|+..........+...+ ..+++||++++. +|+++|+|||++ ||+.++.
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~ 189 (257)
T PRK10619 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPELVG 189 (257)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHH
Confidence 753 3456777888643100000111111 123999999999 999999999999 9999998
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 024360 117 PVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v 136 (268)
.+. ++++++++.|.+++++
T Consensus 190 ~l~-~~l~~l~~~g~tiiiv 208 (257)
T PRK10619 190 EVL-RIMQQLAEEGKTMVVV 208 (257)
T ss_pred HHH-HHHHHHHhcCCEEEEE
Confidence 888 8889887667787666
No 120
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.1e-22 Score=176.98 Aligned_cols=136 Identities=14% Similarity=0.198 Sum_probs=100.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-Cc-------ccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-~~-------~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~ 108 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG 108 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999997642 112333 11 236666553
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+..+| ++||++++. +|+++|+||||+ ||+.++..++ ++
T Consensus 109 ~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~ 179 (275)
T PRK13639 109 LSKEEVEKRVKEALKAVGMEGF------ENKPPHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KL 179 (275)
T ss_pred CCHHHHHHHHHHHHHHCCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 3456777888654 233333332 899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++.+++++ +|...+...++
T Consensus 180 l~~l~~~~~til~v----tH~~~~~~~~~ 204 (275)
T PRK13639 180 LYDLNKEGITIIIS----THDVDLVPVYA 204 (275)
T ss_pred HHHHHHCCCEEEEE----ecCHHHHHHhC
Confidence 88887667777665 35544333333
No 121
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1.1e-21 Score=171.20 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------CCCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------~~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| ++..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 478999999999999999999999999999999986542 122333 23457776654
Q ss_pred ----HHHHHHHhC-CCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ----~~~~m~~~~-L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
..++++.++ ++.. .+.....+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~l~~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~ 177 (230)
T TIGR03410 107 SRKIPDEIYELFPVLKEM------LGRRGGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRL 177 (230)
T ss_pred hHHHHHHHHHHHHhHHHH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence 133444443 2221 12222222 2999999999 999999999999 9999998888 888888
Q ss_pred HhC-CCeEEEE
Q 024360 127 KSR-NFNVCAV 136 (268)
Q Consensus 127 ~~~-~~~ii~v 136 (268)
+++ +.+++++
T Consensus 178 ~~~~~~tii~~ 188 (230)
T TIGR03410 178 RAEGGMAILLV 188 (230)
T ss_pred HHcCCcEEEEE
Confidence 764 6777655
No 122
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=182.82 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=98.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+.+.| ++.+++.+++.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE 125 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 468999999999999999999999999999999997642 122332 45678888775
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++ +++|||+|+. +|+++|||||++ ||...+..+. ..++++.
T Consensus 126 ~~~~v~~~l~~l~L~~~------~~~~~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 196 (377)
T PRK11607 126 IASRVNEMLGLVHMQEF------AKRKPHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDIL 196 (377)
T ss_pred HHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 3567778888765 24444333 3999999999 999999999999 9999998887 6666665
Q ss_pred h-CCCeEEEE
Q 024360 128 S-RNFNVCAV 136 (268)
Q Consensus 128 ~-~~~~ii~v 136 (268)
+ .+.++++|
T Consensus 197 ~~~g~tii~v 206 (377)
T PRK11607 197 ERVGVTCVMV 206 (377)
T ss_pred HhcCCEEEEE
Confidence 4 47777665
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=173.93 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=98.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 108 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence 4789999999999999999999999999999999875421 12222 23456776653
Q ss_pred ------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHh------cCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~------~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++... .+..+.. ++++||++++ . +|+++|+||||+ ||+.++..+.
T Consensus 109 ~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHL------AGRDYPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred HHHHHHHHHHHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH
Confidence 3456677777543 1222322 2399999999 5 899999999999 9999998888
Q ss_pred HHHHHHHH-hCCCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++ +.+.+++++ +|.......++
T Consensus 181 -~~l~~~~~~~~~tiii~----sH~~~~~~~~~ 208 (258)
T PRK13548 181 -RLARQLAHERGLAVIVV----LHDLNLAARYA 208 (258)
T ss_pred -HHHHHHHHhcCCEEEEE----ECCHHHHHHhc
Confidence 8888887 557777655 35544443443
No 124
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.3e-22 Score=176.80 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=92.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-Cc-------ccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-PV-------AMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-~~-------~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~ 107 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG 107 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999997642 112333 21 123444332
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+. .+..+.. .+++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 178 (271)
T PRK13638 108 VPEAEITRRVDEALTLVDAQHF------RHQPIQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AI 178 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHhH------hcCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 3456677777543 1222222 23999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
+++++++|.+++++
T Consensus 179 l~~~~~~g~tii~v 192 (271)
T PRK13638 179 IRRIVAQGNHVIIS 192 (271)
T ss_pred HHHHHHCCCEEEEE
Confidence 88887667777655
No 125
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=176.05 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=97.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC--------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ....++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP 113 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence 4689999999999999999999999999999999976532 12333 12346666653
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+||||+ ||+.+++.++ ++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~ 184 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDF------KEREPARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIK 184 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 4567778888653 23333333 3999999999 999999999999 9999999988 8898
Q ss_pred HHHhC-CCeEEEE
Q 024360 125 HLKSR-NFNVCAV 136 (268)
Q Consensus 125 ~l~~~-~~~ii~v 136 (268)
+++++ |.+++++
T Consensus 185 ~l~~~~g~tiliv 197 (279)
T PRK13650 185 GIRDDYQMTVISI 197 (279)
T ss_pred HHHHhcCCEEEEE
Confidence 88764 7888666
No 126
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=1.4e-22 Score=176.49 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=92.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC-----CCCCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|++ +|++|+|.+.|.+... +.+.| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 106 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR 106 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence 478999999999999999999999 9999999999876421 12333 11 346666553
Q ss_pred -------------HHHHHHHhCCCCCCChhh-hHhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIY-CMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~-~~~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++.+...... ..+...+ .++++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~ 183 (227)
T cd03260 107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL 183 (227)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 235566777764310000 0011111 123999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
+++++++ .+++++
T Consensus 184 l~~~~~~-~tii~~ 196 (227)
T cd03260 184 IAELKKE-YTIVIV 196 (227)
T ss_pred HHHHhhC-cEEEEE
Confidence 8888765 666544
No 127
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.87 E-value=1.6e-21 Score=182.38 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=102.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc----CCcC-----------CCCCC-------CcccChhhhhh--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFDY-------PVAMDIRELIS-- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~----d~~~-----------~~~~y-------~~~~~i~~~i~-- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|++.|. ++.. ..+.| .+..++++++.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 478999999999999999999999999999999985 3211 12333 34567887764
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+||.+. .+..+.++| +.||++|+. +|+++|+|||++ ||+.++..
T Consensus 131 ~~~~g~~~~~~~~~a~e~le~vgL~~~------~~~~~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 131 LEMQGMPEAERRKRVDEQLELVGLAQW------ADKKPGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHH
Confidence 3567888888764 233333333 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 118 VLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 118 i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+. +++.+++++ +.+++++ +|.+.+...++
T Consensus 203 l~-~~L~~l~~~~~~TII~i----THdl~e~~~l~ 232 (382)
T TIGR03415 203 LQ-DELLELQAKLNKTIIFV----SHDLDEALKIG 232 (382)
T ss_pred HH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 88 888888754 7787766 35554444443
No 128
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.5e-23 Score=187.20 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=94.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------------------CCCCC-Cc-------cc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM 51 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------------------~~~~y-~~-------~~ 51 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| ++ ..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 4789999999999999999999999999999999865321 11223 11 12
Q ss_pred Chhhhhh----------------HHHHHHHhCCC-CCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCC
Q 024360 52 DIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPG 108 (268)
Q Consensus 52 ~i~~~i~----------------~~~~m~~~~L~-~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~ 108 (268)
++++++. +.++++.+++. .. .+..+.+ ++++||++|+. +|+++||||||
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPt 204 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY------LERSPFGLSGGQKRRVAIAGILAI--QPEILIFDEPT 204 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCc
Confidence 5666542 45677778885 22 1222222 23999999999 99999999999
Q ss_pred c-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 109 Q-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 109 ~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+ ||+.+++.++ +++++++++|.+++++
T Consensus 205 sgLD~~~~~~l~-~~L~~l~~~g~Tiiiv 232 (320)
T PRK13631 205 AGLDPKGEHEMM-QLILDAKANNKTVFVI 232 (320)
T ss_pred cCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 9 9999999988 8888887667787665
No 129
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=172.76 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=93.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV 109 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence 4689999999999999999999999999999999876421 22333 11 135655543
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-C
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~ 129 (268)
+.++++.+++.+.- .+..+.. .++.||++++. +|+++|+|||++ ||+.++..+. ++++.+++ .
T Consensus 110 ~~~~~l~~~~l~~~~-----~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (241)
T PRK14250 110 DVEYYLSIVGLNKEY-----ATRDVKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKM 181 (241)
T ss_pred HHHHHHHHcCCCHHH-----hhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhC
Confidence 35677778885210 1222222 23899999999 999999999999 9999998888 88888875 3
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
|.+++++
T Consensus 182 g~tii~~ 188 (241)
T PRK14250 182 NLTVIWI 188 (241)
T ss_pred CCEEEEE
Confidence 7777655
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=175.22 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=100.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-------cccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-------~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + ...++++++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~ 110 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD 110 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence 4789999999999999999999999999999999976532 12222 1 1346666653
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. ++..+..+ +++||++|+. +|+++|+||||+ ||+.++..+. ++++
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~ 181 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEEL------RDRVPHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLN 181 (277)
T ss_pred HHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 3566777788654 23333332 3899999999 999999999999 9999998888 8898
Q ss_pred HHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 125 HLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++ +.+++++ +|...+...++
T Consensus 182 ~l~~~~g~tvli~----tH~~~~~~~~~ 205 (277)
T PRK13652 182 DLPETYGMTVIFS----THQLDLVPEMA 205 (277)
T ss_pred HHHHhcCCEEEEE----ecCHHHHHHhC
Confidence 88764 7777655 45554444443
No 131
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.86 E-value=1.3e-21 Score=174.93 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=96.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C--------cccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P--------VAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~--------~~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++.+++.
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 119 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD 119 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999876531 12322 1 1223333321
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+........+...+ ..+++||++++. +|+++|||||++ ||+.++..+. +++++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~ 196 (267)
T PRK15112 120 LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLELQ 196 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 4567788888532110000111111 123899999999 999999999999 9999998888 8888887
Q ss_pred hC-CCeEEEEEecccccccCHHHHH
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++ |.+++++ +|...+...++
T Consensus 197 ~~~g~tviiv----sH~~~~~~~~~ 217 (267)
T PRK15112 197 EKQGISYIYV----TQHLGMMKHIS 217 (267)
T ss_pred HHcCcEEEEE----eCCHHHHHHhc
Confidence 54 7777655 45544433333
No 132
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-21 Score=171.42 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=95.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhhH--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISL-------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~~-------- 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 111 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD 111 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence 4789999999999999999999999999999999976421 12333 223567666542
Q ss_pred ------HHHHHHh-CCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 60 ------EDVMEEL-GLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 60 ------~~~m~~~-~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
.++++.+ ++.+. .+..+.. .+++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~l~~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 182 (237)
T PRK11614 112 QFQERIKWVYELFPRLHER------RIQRAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQ 182 (237)
T ss_pred HHHHHHHHHHHHHHHHHHH------HhCchhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 2233334 23221 1112222 23899999999 999999999999 9999998888 88888
Q ss_pred HHhCCCeEEEEEecccccccCHHHHH
Q 024360 126 LKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++.+++++ +|...+...++
T Consensus 183 ~~~~~~tiii~----sH~~~~~~~~~ 204 (237)
T PRK11614 183 LREQGMTIFLV----EQNANQALKLA 204 (237)
T ss_pred HHHCCCEEEEE----eCcHHHHHhhC
Confidence 87667777655 35544333333
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-21 Score=177.12 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=101.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------CCCCC-C-------cccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------~~~~y-~-------~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| + ...++++++.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 112 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK 112 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence 4789999999999999999999999999999999976521 12333 1 1246666653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+++... .+....++ +++||++|+. +|+++|+|||++ ||+.++..+. ++
T Consensus 113 ~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~ 183 (283)
T PRK13636 113 LPEDEVRKRVDNALKRTGIEHL------KDKPTHCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KL 183 (283)
T ss_pred CCHHHHHHHHHHHHHHCCChhh------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HH
Confidence 4556777888653 23333332 3999999999 999999999999 9999999888 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++ |.+++++ +|.+.....++
T Consensus 184 l~~l~~~~g~tillv----sH~~~~~~~~~ 209 (283)
T PRK13636 184 LVEMQKELGLTIIIA----THDIDIVPLYC 209 (283)
T ss_pred HHHHHHhCCCEEEEE----ecCHHHHHHhC
Confidence 8888764 7787655 46555444444
No 134
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=1.7e-21 Score=172.49 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=94.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------------------CCCCCC-------CcccChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------------------~~~~~y-------~~~~~i~~ 55 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 478999999999999999999999999999999986542 112322 23356665
Q ss_pred hhh-----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CC
Q 024360 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (268)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD 111 (268)
++. +.++++.+++.+. ++..+..+ +++||++++. +|+++|+|||++ ||
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD 178 (252)
T TIGR03005 107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADK------ADHMPAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALD 178 (252)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH------hhcChhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCC
Confidence 543 3456677777543 23333222 2899999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 112 LFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
+.++..+. ++++++.++ +.+++++
T Consensus 179 ~~~~~~l~-~~l~~~~~~~~~tiiiv 203 (252)
T TIGR03005 179 PELVGEVL-NVIRRLASEHDLTMLLV 203 (252)
T ss_pred HHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence 99998888 888888654 7777665
No 135
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=189.08 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=96.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999876421 22333 23456665432
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.++++.. .+..+.++ +++||++|+. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 181 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFS------SDKLVGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF- 181 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCC------ccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-
Confidence 3466778888754 23333333 3999999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEE
Q 024360 121 NFVDHLKSRNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (268)
++++++++.+.+++++
T Consensus 182 ~~l~~l~~~~~tvii~ 197 (501)
T PRK10762 182 RVIRELKSQGRGIVYI 197 (501)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 8899987667777655
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=174.32 Aligned_cols=136 Identities=28% Similarity=0.429 Sum_probs=97.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 4789999999999999999999999999999999876421 12222 22345555443
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.+++.+. +
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~ 188 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPL------AHRLVDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-A 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 3455666676532 22222222 3999999999 999999999999 9999999888 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++. +.+++++ +|.......++
T Consensus 189 ~l~~l~~~~~~tiii~----sH~~~~i~~~~ 215 (265)
T PRK10575 189 LVHRLSQERGLTVIAV----LHDINMAARYC 215 (265)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 88888654 7777655 45544333333
No 137
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.2e-21 Score=165.09 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC-----ceEEEeccCCcCC---------CCCC------CcccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NFDY------PVAMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~-----G~v~i~~~d~~~~---------~~~y------~~~~~i~~~i~---- 58 (268)
.++++|||+|||||||++++..+..... |+|.+.|.+.... .++. +..++|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 5789999999999999999999987654 9999999876331 1111 22478888876
Q ss_pred ------------HHHHHHHhCCCCC--CChhhh-Hhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ------------LEDVMEELGLGPN--GGLIYC-MEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~--g~~~~~-~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
++..++...|..- -.+..+ .... .++++..|||+|+. +|++||+|||++ |||.+...+= +
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e 190 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E 190 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence 2222332222110 000000 1111 12345899999999 999999999999 9999998877 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccCH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDV 147 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~ 147 (268)
++..|++ ..||++|. |.+...
T Consensus 191 Li~eLk~-~yTIviVT----HnmqQA 211 (253)
T COG1117 191 LITELKK-KYTIVIVT----HNMQQA 211 (253)
T ss_pred HHHHHHh-ccEEEEEe----CCHHHH
Confidence 9999974 68887773 555433
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=3.1e-21 Score=172.16 Aligned_cols=137 Identities=17% Similarity=0.262 Sum_probs=98.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC---------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y---------~~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999875421 12332 23356665441
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++.... .+..... ++++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~ 190 (265)
T TIGR02769 118 LTSLDESEQKARIAELLDMVGLRSED-----ADKLPRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL 190 (265)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhh-----hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH
Confidence 35667777875211 1222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++. |.+++++ +|.......++
T Consensus 191 -~~l~~~~~~~g~tiiiv----sH~~~~~~~~~ 218 (265)
T TIGR02769 191 -ELLRKLQQAFGTAYLFI----THDLRLVQSFC 218 (265)
T ss_pred -HHHHHHHHhcCcEEEEE----eCCHHHHHHHh
Confidence 888888754 7777655 35544333333
No 139
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.4e-22 Score=178.37 Aligned_cols=164 Identities=16% Similarity=0.272 Sum_probs=135.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc-----------CCcCCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-----------DPAAENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~-----------d~~~~~~~y-------~~~~~i~~~i~------ 58 (268)
-+++|.|++|||||||+|+|+|+.+|+.|.|.++|. .|..+.++| +|.++|+.|+.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 478999999999999999999999999999999884 223345666 45677777765
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++...+|++|. +++++..+| ++|+|||.. .|+++++|||.+ ||...+++++ -.+++|.
T Consensus 105 ~~~~fd~iv~lLGI~hL------L~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~ 175 (352)
T COG4148 105 MRAQFDQLVALLGIEHL------LDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLR 175 (352)
T ss_pred chHhHHHHHHHhCcHHH------HhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHH
Confidence 6788999999998 677776665 999999999 999999999999 9999999999 8899998
Q ss_pred hC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccC
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~ 179 (268)
++ +..|+.| ||.+.+...+.+.+.+...+.++...|...|++..|+..
T Consensus 176 ~e~~IPIlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~p 224 (352)
T COG4148 176 DEINIPILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224 (352)
T ss_pred HhcCCCEEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccCc
Confidence 65 7777666 588888888888777777777777777777777776654
No 140
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=1.5e-21 Score=179.36 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=94.0
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh----------------
Q 024360 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS---------------- 58 (268)
Q Consensus 7 liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~---------------- 58 (268)
|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+.+++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999876421 22333 34567777754
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-C
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~ 130 (268)
+.++++.+++.+. ++..+.++ +++||++|+. +|+++|||||++ ||+.++..+. ++++++.++ |
T Consensus 81 ~~~~l~~~~l~~~------~~~~~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g 151 (325)
T TIGR01187 81 VLEALRLVQLEEF------ADRKPHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLG 151 (325)
T ss_pred HHHHHHHcCCcch------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence 3456777888654 23333333 3999999999 999999999999 9999998888 888888654 7
Q ss_pred CeEEEE
Q 024360 131 FNVCAV 136 (268)
Q Consensus 131 ~~ii~v 136 (268)
.+++++
T Consensus 152 ~tiiiv 157 (325)
T TIGR01187 152 ITFVFV 157 (325)
T ss_pred CEEEEE
Confidence 777665
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.3e-21 Score=172.00 Aligned_cols=136 Identities=20% Similarity=0.353 Sum_probs=97.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 4689999999999999999999999999999999865321 12322 22345655543
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+..+ ++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 179 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHL------ADRRLTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-R 179 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHH------HcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 2345556666532 12222222 3899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++.+++++.+++++ +|...+...++
T Consensus 180 ~l~~l~~~~~tiii~----tH~~~~~~~~~ 205 (255)
T PRK11231 180 LMRELNTQGKTVVTV----LHDLNQASRYC 205 (255)
T ss_pred HHHHHHHCCCEEEEE----ECCHHHHHHhc
Confidence 888887667777655 46555444444
No 142
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=2.7e-21 Score=187.52 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=98.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 4789999999999999999999999999999999876421 12333 23467777653
Q ss_pred ---HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 59 ---LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 59 ---~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+.++++.+++... .+..+.+ ++++||++|+. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 118 ~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~ 188 (510)
T PRK15439 118 MQKMKQLLAALGCQLD------LDSSAGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLA 188 (510)
T ss_pred HHHHHHHHHHcCCCcc------ccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHH
Confidence 4567888888654 2333333 33999999999 999999999999 9999999988 88988877
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
+|.+++++
T Consensus 189 ~g~tiiiv 196 (510)
T PRK15439 189 QGVGIVFI 196 (510)
T ss_pred CCCEEEEE
Confidence 67777665
No 143
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-21 Score=173.54 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=97.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC--------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....++.+++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~ 113 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP 113 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence 4689999999999999999999999999999999987532 12333 12346777654
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+||.+. .+..+..+| ++||++++. +|+++|+|||++ ||+.++..++ ++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~ 184 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVR 184 (279)
T ss_pred HHHHHHHHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 4566777888754 233333333 999999999 999999999999 9999999888 8899
Q ss_pred HHHhC-CCeEEEE
Q 024360 125 HLKSR-NFNVCAV 136 (268)
Q Consensus 125 ~l~~~-~~~ii~v 136 (268)
+++++ |.+++++
T Consensus 185 ~l~~~~~~tiliv 197 (279)
T PRK13635 185 QLKEQKGITVLSI 197 (279)
T ss_pred HHHHcCCCEEEEE
Confidence 88765 7777655
No 144
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=3e-21 Score=168.70 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=96.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC----CCceEEEeccCCcC-----CCCCC---------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~----~~G~v~i~~~d~~~-----~~~~y---------~~~~~i~~~i~------ 58 (268)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..+.| .+.+++.+++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 47899999999999999999999999 89999999976421 12322 22345444321
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++...... .+..... .+++||++++. +|+++|||||++ ||+.++..+. +
T Consensus 93 ~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~ 166 (230)
T TIGR02770 93 GKLSKQARALILEALEAVGLPDPEEV---LKKYPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-K 166 (230)
T ss_pred CccHHHHHHHHHHHHHHcCCCchHHH---HhCChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-H
Confidence 4456777777521000 1222222 23999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccCHHHH
Q 024360 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (268)
++++++++ +.+++++ +|...+...+
T Consensus 167 ~l~~~~~~~~~tiii~----sH~~~~~~~~ 192 (230)
T TIGR02770 167 LLRELRQLFGTGILLI----THDLGVVARI 192 (230)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 88888654 6777655 3554433333
No 145
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.86 E-value=1e-21 Score=165.58 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=89.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhh-HHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~-~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+...... ...+..+. +.++++.+++.+..... .....
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~-----~~~~~~i~~~~q~l~~~gl~~~~~~~-~~~LS 99 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP-----KELARKIAYVPQALELLGLAHLADRP-FNELS 99 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH-----HHHHHHHhHHHHHHHHcCCHhHhcCC-cccCC
Confidence 4789999999999999999999999999999999876532110 01111121 23378888886531100 00111
Q ss_pred h-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 82 E-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 82 ~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
. +..+++||++++. +|+++|+|||++ ||+.++..+. ++++.++++ +.+++++
T Consensus 100 ~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 100 GGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV 154 (180)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 1 1223899999999 999999999999 9999998888 888888765 6677655
No 146
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=3.5e-21 Score=172.09 Aligned_cols=125 Identities=17% Similarity=0.055 Sum_probs=92.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC-cCCCCCCCcccChhhhhh----------------HHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~-~~~~~~y~~~~~i~~~i~----------------~~~~m~~ 65 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|... ......+.+..++++++. +.++++.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF 130 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988521 112223344456666553 2334556
Q ss_pred hCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 66 LGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+++++. ++.....+ +++||++++. +|+++|+|||++ ||+.++..+. +++..+++.+.+++++
T Consensus 131 ~~l~~~------~~~~~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii 199 (264)
T PRK13546 131 SELGEF------IYQPVKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV 199 (264)
T ss_pred cCCchh------hcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 666543 22222222 2899999999 999999999999 9999998888 8888887667777665
No 147
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=181.97 Aligned_cols=139 Identities=14% Similarity=0.206 Sum_probs=114.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------------CCCCCCCcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------------~~~~~y~~~~~i~~~i~--------- 58 (268)
.+.+|+|.||||||||+++|.|+++|++|+|+++|.... .+++...+.+|+.||+-
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 478999999999999999999999999999999997542 25566677888888864
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhh------hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~------~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++++|+.-. .+.... ++++.|.++|.. +|++|||||||+ |-|....+++ .
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vd------p~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~ 181 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVD------PDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-E 181 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCC------ccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 6789999998744 233332 344899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccCHHHHHHHH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (268)
+++.++++|.+||+| +|-+.+...+++++
T Consensus 182 ~l~~l~~~G~tIi~I----THKL~Ev~~iaDrv 210 (501)
T COG3845 182 ILRRLAAEGKTIIFI----THKLKEVMAIADRV 210 (501)
T ss_pred HHHHHHHCCCEEEEE----eccHHHHHHhhCee
Confidence 999999999999877 47777777776544
No 148
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=2.4e-21 Score=171.01 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=97.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-----CceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.+... +.+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~ 107 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR 107 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence 478999999999999999999999998 9999999876531 22333 11 156666543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+... ..++..+.++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 108 LHGIKDKKELDEIVEESLKKAALWDEVK--DRLHDSALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchh--hHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 234566777762100 0023333332 3899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++.+++ +.+++++ +|...+...++
T Consensus 184 ~-~~l~~~~~-~~tiiiv----sH~~~~~~~~~ 210 (247)
T TIGR00972 184 E-ELIQELKK-KYTIVIV----THNMQQAARIS 210 (247)
T ss_pred H-HHHHHHHh-cCeEEEE----ecCHHHHHHhC
Confidence 8 88888866 4666544 45544333333
No 149
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=4e-21 Score=166.78 Aligned_cols=125 Identities=18% Similarity=0.303 Sum_probs=94.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999876421 12332 12345554332
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++++. .+..+.++ +++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~ 182 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDH------LDYYPHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-E 182 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhh------hhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-H
Confidence 5667788888654 23333332 3899999999 999999999999 9999998888 8
Q ss_pred HHHHHHh-CCCeEEEE
Q 024360 122 FVDHLKS-RNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~-~~~~ii~v 136 (268)
+++.+.+ .+.+++++
T Consensus 183 ~l~~~~~~~~~tii~~ 198 (220)
T TIGR02982 183 LMQKLAREQGCTILIV 198 (220)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888865 46777655
No 150
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.86 E-value=3e-21 Score=167.82 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=92.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe--cc--CCc-----------CCCCCC-------CcccChhhhhh--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-------PVAMDIRELIS-- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~--~~--d~~-----------~~~~~y-------~~~~~i~~~i~-- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+. |. +.. ...+.| .+..++++++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 4689999999999999999999999999999997 32 321 122333 22345555442
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++.+.. .+..+.+ +++.||++++. +|+++|+|||++ ||+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 115 LLERGVPREAARARARELLARLNIPERL-----WHLPPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhh-----hhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 34566777775421 1222222 23899999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
+. +++++++++|.+++++
T Consensus 188 l~-~~l~~~~~~g~tii~v 205 (224)
T TIGR02324 188 VV-ELIAEAKARGAALIGI 205 (224)
T ss_pred HH-HHHHHHHhcCCEEEEE
Confidence 88 8888887667777655
No 151
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=175.78 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=91.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc------------CCCCCC-Cc-------ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PV-------AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~------------~~~~~y-~~-------~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| ++ ..++++++.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 117 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV 117 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence 478999999999999999999999999999999886532 112333 11 125665543
Q ss_pred ------------HHHHHHHhCCC-CCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 ------------~~~~m~~~~L~-~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++. .. .+..... ++++||++++. +|+++|||||++ ||+.++..+
T Consensus 118 ~~~~~~~~~~~~~~~ll~~~~L~~~~------~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l 189 (289)
T PRK13645 118 NLGENKQEAYKKVPELLKLVQLPEDY------VKRSPFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDF 189 (289)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhH------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHH
Confidence 23456667773 22 1222222 23999999999 999999999999 999999888
Q ss_pred HHHHHHHHHh-CCCeEEEE
Q 024360 119 LRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v 136 (268)
. ++++++.+ .+.+++++
T Consensus 190 ~-~~l~~~~~~~~~tiiii 207 (289)
T PRK13645 190 I-NLFERLNKEYKKRIIMV 207 (289)
T ss_pred H-HHHHHHHHhcCCEEEEE
Confidence 8 88888865 37777655
No 152
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-21 Score=172.67 Aligned_cols=125 Identities=15% Similarity=0.249 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC--------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 115 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence 4789999999999999999999999999999999976531 22333 12357777654
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+. ++..+.++| +.||++++. +|+++|+|||++ ||+.+++.++ ++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~ 186 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDY------LDKEPQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMV 186 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHH------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 3456677777643 233333332 899999999 999999999999 9999998888 8888
Q ss_pred HHHhC-CCeEEEE
Q 024360 125 HLKSR-NFNVCAV 136 (268)
Q Consensus 125 ~l~~~-~~~ii~v 136 (268)
+++++ +.+++++
T Consensus 187 ~~~~~~~~tiii~ 199 (271)
T PRK13632 187 DLRKTRKKTLISI 199 (271)
T ss_pred HHHHhcCcEEEEE
Confidence 88755 4676655
No 153
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=3.2e-21 Score=177.51 Aligned_cols=136 Identities=18% Similarity=0.308 Sum_probs=102.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC---------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y---------~~~~~i~~~i~----- 58 (268)
-+++|+|+||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++.+++.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999987521 12322 33456666642
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.. ++.++.++| ++||++|+. +|+++|+||||+ ||+.++..+
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~-----~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i 200 (331)
T PRK15079 128 YHPKLSRQEVKDRVKAMMLKVGLLPNL-----INRYPHEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQV 200 (331)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCChHH-----hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 34667778885421 244444333 999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhC-CCeEEEEEecccccccCHHHH
Q 024360 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 119 ~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (268)
+ +++++++++ +.++++| +|.+.....+
T Consensus 201 ~-~lL~~l~~~~~~til~i----THdl~~~~~~ 228 (331)
T PRK15079 201 V-NLLQQLQREMGLSLIFI----AHDLAVVKHI 228 (331)
T ss_pred H-HHHHHHHHHcCCEEEEE----eCCHHHHHHh
Confidence 9 899998764 7787766 4555433333
No 154
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.3e-21 Score=184.35 Aligned_cols=137 Identities=19% Similarity=0.267 Sum_probs=110.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------------CCCCCCcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------------~~~~y~~~~~i~~~i~--------- 58 (268)
.+.+++|.||||||||+|+|+|.++|++|+|.++|..... +.+...|+++|.+|+.
T Consensus 35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 5789999999999999999999999999999999975421 3445567888888875
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++|+.+++... .+....++| ++||+|+.. +++++||||||+ |.....+.++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~------~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf- 185 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDID------PDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF- 185 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCC------hhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 5678888887511 123333322 999999999 999999999999 9999998988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+++++|+++|.++|.| ||.+.+...+++
T Consensus 186 ~~ir~Lk~~Gv~ii~I----SHrl~Ei~~i~D 213 (500)
T COG1129 186 DLIRRLKAQGVAIIYI----SHRLDEVFEIAD 213 (500)
T ss_pred HHHHHHHhCCCEEEEE----cCcHHHHHHhcC
Confidence 9999999999999877 477666666654
No 155
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.1e-21 Score=172.18 Aligned_cols=136 Identities=18% Similarity=0.379 Sum_probs=98.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 4689999999999999999999999999999999876421 12222 12345555432
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++... ++..+.. .++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~ 184 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHL------ADQSVDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-E 184 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-H
Confidence 3456667777542 1223322 23999999999 999999999999 9999999888 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++.+. +.+++++ +|.......++
T Consensus 185 ~L~~l~~~~~~tiii~----tH~~~~~~~~~ 211 (265)
T PRK10253 185 LLSELNREKGYTLAAV----LHDLNQACRYA 211 (265)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 88888754 7777655 35554444444
No 156
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.8e-21 Score=168.65 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=94.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 105 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE 105 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999976532 12222 23456665543
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++++|||++ ||+.++..+. ++++.+.
T Consensus 106 ~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~ 176 (235)
T cd03299 106 IERKVLEIAEMLGIDHL------LNRKPETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIR 176 (235)
T ss_pred HHHHHHHHHHHcCChhH------HhcCcccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456777787643 23333332 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 177 ~~~~~tili~ 186 (235)
T cd03299 177 KEFGVTVLHV 186 (235)
T ss_pred HhcCCEEEEE
Confidence 54 7777655
No 157
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.2e-21 Score=172.27 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=95.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C-------cccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P-------VAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~-------~~~~i~~~i~-------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + ...++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 108 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL 108 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence 4789999999999999999999999999999999976521 12333 1 1246666543
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++... .+..+.. ++++||++++. +|+++|+||||+ ||+.++..++ +++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l 179 (274)
T PRK13644 109 PPIEIRKRVDRALAEIGLEKY------RHRSPKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERI 179 (274)
T ss_pred CHHHHHHHHHHHHHHCCCHHH------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 4456677777643 1222222 23999999999 999999999999 9999998888 888
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
++++++|.+++++
T Consensus 180 ~~l~~~g~til~~ 192 (274)
T PRK13644 180 KKLHEKGKTIVYI 192 (274)
T ss_pred HHHHhCCCEEEEE
Confidence 8887667787655
No 158
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=3.7e-21 Score=170.75 Aligned_cols=136 Identities=18% Similarity=0.292 Sum_probs=97.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 4789999999999999999999999999999999876421 12333 12345666542
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++... .+..+..+ ++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 178 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHL------ADRDMSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-A 178 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-H
Confidence 2344555666432 12222222 2899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++.+++++ +|.......++
T Consensus 179 ~l~~~~~~~~tiii~----sH~~~~~~~~~ 204 (256)
T TIGR03873 179 LVRELAATGVTVVAA----LHDLNLAASYC 204 (256)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 899887667777655 45544333333
No 159
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=7.8e-22 Score=164.07 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=97.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------------------------CCCCCCcccChhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL 56 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------------------------~~~~y~~~~~i~~~ 56 (268)
++.|||.+||||||+++||+=+-+|+.|.|.++|..... +++..+..+|+-++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 578999999999999999999999999999998864310 11222233344444
Q ss_pred hh-----------------HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 57 i~-----------------~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+- ++..+.++|+..... .|+..... ++++++|||+|+. +|++++|||||+ |||...-+
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHHH
Confidence 32 566777888876631 22222222 2234999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
++ .+++.|+++|.|.++|
T Consensus 191 VL-kv~~~LAeEgrTMv~V 208 (256)
T COG4598 191 VL-KVMQDLAEEGRTMVVV 208 (256)
T ss_pred HH-HHHHHHHHhCCeEEEE
Confidence 99 9999999999998766
No 160
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=4.3e-21 Score=168.52 Aligned_cols=136 Identities=17% Similarity=0.238 Sum_probs=99.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~ 106 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence 4789999999999999999999999999999999876531 22333 22346666553
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. .+....++ +++||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 107 ~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~ 177 (237)
T TIGR00968 107 IKARVEELLELVQLEGL------GDRYPNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLH 177 (237)
T ss_pred HHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456677777543 23322222 2899999999 999999999999 9999998888 8888887
Q ss_pred hC-CCeEEEEEecccccccCHHHHH
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++ +.+++++ +|...+...++
T Consensus 178 ~~~~~tvli~----sH~~~~~~~~~ 198 (237)
T TIGR00968 178 DEVHVTTVFV----THDQEEAMEVA 198 (237)
T ss_pred HhcCCEEEEE----eCCHHHHHhhc
Confidence 65 6777655 45544333333
No 161
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=5.4e-21 Score=167.34 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=95.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|.+|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE 106 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 478999999999999999999999999999999987542 122333 22346666543
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+.++++.+++.+. ++..+.++ +++||++++. +|+++|+|||++ ||+.++..+. ++++.++
T Consensus 107 ~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~ 177 (232)
T cd03300 107 IKERVAEALDLVQLEGY------ANRKPSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQ 177 (232)
T ss_pred HHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 3456777888654 23333222 2899999999 999999999999 9999998888 8888887
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ +.+++++
T Consensus 178 ~~~~~tiii~ 187 (232)
T cd03300 178 KELGITFVFV 187 (232)
T ss_pred HHcCCEEEEE
Confidence 54 7777655
No 162
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=7.5e-22 Score=176.34 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=105.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------------------CCCCCCcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------------------~~~~y~~~~~i~~~i~------ 58 (268)
.|++|+|-+|||||||+++++++++|+.|+|.+.|.|+.. +++...|..||-+++.
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 5789999999999999999999999999999999998743 3455567778888765
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+||..+ .++++.++| +.|||||+. +|+++++|||++ |||-.+.++- +
T Consensus 135 Gv~~~er~~~a~~~l~~VgL~~~------~~~yp~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQ-d 205 (386)
T COG4175 135 GVPKAEREERALEALELVGLEGY------ADKYPNELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQ-D 205 (386)
T ss_pred CCCHHHHHHHHHHHHHHcCchhh------hhcCcccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHH-H
Confidence 6789999999887 366666655 999999999 999999999999 9999998877 5
Q ss_pred HHHHHH-hCCCeEEEE
Q 024360 122 FVDHLK-SRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~-~~~~~ii~v 136 (268)
-+.+|+ +.++||++|
T Consensus 206 eLl~Lq~~l~KTIvFi 221 (386)
T COG4175 206 ELLELQAKLKKTIVFI 221 (386)
T ss_pred HHHHHHHHhCCeEEEE
Confidence 555665 447888776
No 163
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.6e-21 Score=186.55 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=95.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999876421 22333 12345555432
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+|+... .+..+.++ +++||++|+. +|+++|+||||+ ||+.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~ 183 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVD------LDEKVANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDY 183 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCC------cccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHH
Confidence 3456777888654 23333333 3999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
++ +++++++++|.+++++
T Consensus 184 l~-~~l~~l~~~g~tiiiv 201 (510)
T PRK09700 184 LF-LIMNQLRKEGTAIVYI 201 (510)
T ss_pred HH-HHHHHHHhCCCEEEEE
Confidence 88 8999987767777665
No 164
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.8e-22 Score=182.75 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=97.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC---------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y---------~~~~~i~~~i~----- 58 (268)
.+++|+|+||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++.+++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 12333 22345554432
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+||.+.. ++.++.++| ++||++|+. +|++||+||||+ ||..++..++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~-----~~~~p~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~ 194 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEH-----YDRYPHMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL 194 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHH-----hcCCCccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH
Confidence 56778888886432 244444433 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhC-CCeEEEE
Q 024360 120 RNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~-~~~ii~v 136 (268)
+++++++++ |.++++|
T Consensus 195 -~lL~~l~~~~g~til~i 211 (327)
T PRK11308 195 -NLMMDLQQELGLSYVFI 211 (327)
T ss_pred -HHHHHHHHHcCCEEEEE
Confidence 888888764 7887766
No 165
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=3.3e-21 Score=185.89 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=96.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc--------------ccChhhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI--- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~--------------~~~i~~~i--- 57 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| ++ ..++++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 4689999999999999999999999999999988765421 11222 11 24566654
Q ss_pred -----hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 58 -----~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
.+.++++.+++.+. .+..+..+ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 110 ~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 180 (490)
T PRK10938 110 VKDPARCEQLAQQFGITAL------LDRRFKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLAS 180 (490)
T ss_pred hhHHHHHHHHHHHcCCHhh------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 25678888988654 23333333 3999999999 999999999999 9999999988 88999
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
++++|.+++++
T Consensus 181 ~~~~g~tvii~ 191 (490)
T PRK10938 181 LHQSGITLVLV 191 (490)
T ss_pred HHhcCCeEEEE
Confidence 87667777665
No 166
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.85 E-value=5.1e-21 Score=169.76 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=96.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC---cCCCCCCCcc--cChhhhh---------hHHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVA--MDIRELI---------SLEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~---~~~~~~y~~~--~~i~~~i---------~~~~~m~~~~L 68 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+... ..+...+.+. .++++++ .+.++++.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999876311 0111111111 2444443 15667788888
Q ss_pred CCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEEEecc
Q 024360 69 GPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLD 140 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v~l~d 140 (268)
.+. ++..+..+ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.++ +.+++++
T Consensus 111 ~~~------~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv---- 177 (251)
T PRK09544 111 GHL------IDAPMQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV---- 177 (251)
T ss_pred hHH------HhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----
Confidence 653 23333333 3899999999 999999999999 9999998888 888888654 7777655
Q ss_pred cccccCHHHHH
Q 024360 141 SQFITDVTKFI 151 (268)
Q Consensus 141 ~~~~~d~~~~~ 151 (268)
+|...+...++
T Consensus 178 sH~~~~i~~~~ 188 (251)
T PRK09544 178 SHDLHLVMAKT 188 (251)
T ss_pred ecCHHHHHHhC
Confidence 35544333333
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.9e-21 Score=169.93 Aligned_cols=125 Identities=14% Similarity=0.176 Sum_probs=93.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-------ccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-------AMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-------~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~ 115 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence 4789999999999999999999999999999999976521 22333 11 223443321
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++.+.. +..+.++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~ 186 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERA------DYEPNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVR 186 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhh------hCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 45677888886542 3333222 3899999999 999999999999 9999998888 8888
Q ss_pred HHHhC-CCeEEEE
Q 024360 125 HLKSR-NFNVCAV 136 (268)
Q Consensus 125 ~l~~~-~~~ii~v 136 (268)
++.++ |.+++++
T Consensus 187 ~~~~~~~~tiiiv 199 (269)
T PRK13648 187 KVKSEHNITIISI 199 (269)
T ss_pred HHHHhcCCEEEEE
Confidence 88654 6777655
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=186.05 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=100.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C---------cccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~---------~~~~i~~~i~------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +.+++++++.
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 4689999999999999999999999999999999865421 12333 1 2345555432
Q ss_pred -------------------HHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CC
Q 024360 59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (268)
Q Consensus 59 -------------------~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD 111 (268)
+.++++.+++. .. .+..+..+ ++.||++++. +|+++||||||+ ||
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD 441 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHS------VNQNITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGID 441 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCC------ccCccccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcC
Confidence 34677788885 32 13333333 3999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+.++..++ ++++.++++|.++|++ +|.......++
T Consensus 442 ~~~~~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~ 476 (510)
T PRK09700 442 VGAKAEIY-KVMRQLADDGKVILMV----SSELPEIITVC 476 (510)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhC
Confidence 99999988 8999987767787665 45554444444
No 169
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=7.3e-21 Score=169.02 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=96.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-----CcC-----------CCCCC-Cc--------ccChhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-----~~~-----------~~~~y-~~--------~~~i~~~i 57 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+ +.. ..+.| ++ ..++.+++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999999976 321 12333 11 12333332
Q ss_pred h-----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 58 S-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 58 ~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
. +.++++.+++.+.. ++..+.++ +++||++++. +|+++|+|||++ ||+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 113 GERLMAVGARHYGDIRATAGDWLERVEIDAAR-----IDDLPTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHcCCChhH-----HhCCCccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHH
Confidence 1 34667778875310 22333222 3999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHH
Q 024360 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (268)
++..+. ++++.+.++ |.+++++ +|.......+
T Consensus 186 ~~~~l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~ 218 (258)
T PRK11701 186 VQARLL-DLLRGLVRELGLAVVIV----THDLAVARLL 218 (258)
T ss_pred HHHHHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHh
Confidence 998888 888888654 7777655 3554433333
No 170
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=1.1e-20 Score=159.53 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=91.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C---------cccChhhhhhHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELISLEDVME 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~---------~~~~i~~~i~~~~~m~ 64 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + +..++++++.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 4689999999999999999999999999999999976532 12333 2 22455555432110
Q ss_pred HhCCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 024360 65 ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (268)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~ 143 (268)
| .. .+..+++||++++. +|+++|+|||++ ||+.+++.+. ++++++++++.+++++ +|.
T Consensus 105 ---L----------S~-G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----sh~ 163 (182)
T cd03215 105 ---L----------SG-GNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----SSE 163 (182)
T ss_pred ---c----------CH-HHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCC
Confidence 1 11 11234899999999 999999999999 9999998888 8888887667777655 355
Q ss_pred ccCHHHHH
Q 024360 144 ITDVTKFI 151 (268)
Q Consensus 144 ~~d~~~~~ 151 (268)
..+...++
T Consensus 164 ~~~~~~~~ 171 (182)
T cd03215 164 LDELLGLC 171 (182)
T ss_pred HHHHHHhC
Confidence 44444433
No 171
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=8.5e-21 Score=166.68 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=91.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEeccCCcC--------CCCCC-C------cccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-P------VAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~~~d~~~--------~~~~y-~------~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|++ +|++|+|.+.|.+... ..+.| + +..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 478999999999999999999995 7999999999976421 11333 1 2344544331
Q ss_pred ----------------HHHHHHHhCCCC-CCChhhhHh-hhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 ----------------LEDVMEELGLGP-NGGLIYCME-HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 ----------------~~~~m~~~~L~~-~g~~~~~~~-~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+ ..... ... ... +.++++||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-VNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV 183 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhcccc-cccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence 344556677752 11100 001 111 1223999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++++.+++++
T Consensus 184 ~-~~l~~~~~~~~tvi~v 200 (243)
T TIGR01978 184 A-EGINRLREPDRSFLII 200 (243)
T ss_pred H-HHHHHHHHCCcEEEEE
Confidence 8 8888887667777655
No 172
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.1e-21 Score=172.12 Aligned_cols=125 Identities=14% Similarity=0.270 Sum_probs=92.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----CCCCC-Ccc--------cChhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PVA--------MDIRELI------------ 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----~~~~y-~~~--------~~i~~~i------------ 57 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++. .++++++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 4689999999999999999999999999999998865421 11222 111 1222221
Q ss_pred --------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 58 --------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
.+.++++.+++.+. .+..+..+ ++.||++++. +|+++|+|||++ ||+.+++.+. ++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~ 184 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEF------RHRQIGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SL 184 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhH------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 14566777888643 22333222 3999999999 999999999999 9999998888 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++.++++|.+++++
T Consensus 185 L~~~~~~g~tviiv 198 (272)
T PRK15056 185 LRELRDEGKTMLVS 198 (272)
T ss_pred HHHHHhCCCEEEEE
Confidence 98887667777655
No 173
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.4e-21 Score=184.21 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=95.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC--CCceEEEeccCCcC--------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~--~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47899999999999999999999986 89999999876421 22333 22345555431
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++... .+..+.+ ++++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~ 183 (506)
T PRK13549 112 GGIMDYDAMYLRAQKLLAQLKLDIN------PATPVGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL 183 (506)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCC------cccchhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH
Confidence 4567788888653 2333333 23999999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEE
Q 024360 120 RNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (268)
+++++++++|.+++++
T Consensus 184 -~~l~~l~~~~~tvi~~ 199 (506)
T PRK13549 184 -DIIRDLKAHGIACIYI 199 (506)
T ss_pred -HHHHHHHHCCCEEEEE
Confidence 8898887667777665
No 174
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.85 E-value=1.2e-20 Score=164.48 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=93.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 113 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD 113 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence 4689999999999999999999999999999999875421 22333 11 236666653
Q ss_pred ---HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 59 ---LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 59 ---~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+.++++.+++.... .+..+.+ .++.||++++. +|+++|+|||++ ||+.+++.+. ++++++++
T Consensus 114 ~~~~~~~l~~~~l~~~~-----~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 185 (225)
T PRK10247 114 PAIFLDDLERFALPDTI-----LTKNIAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVR 185 (225)
T ss_pred HHHHHHHHHHcCCChHH-----hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34677777774210 1222222 23999999999 999999999999 9999998887 88888865
Q ss_pred -CCCeEEEE
Q 024360 129 -RNFNVCAV 136 (268)
Q Consensus 129 -~~~~ii~v 136 (268)
.+.+++++
T Consensus 186 ~~~~tvii~ 194 (225)
T PRK10247 186 EQNIAVLWV 194 (225)
T ss_pred hcCCEEEEE
Confidence 37777655
No 175
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=1.3e-20 Score=164.20 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=91.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC---CCCceEEEeccCCcC----CCCCC-------CcccChhhhhhHH--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLE-------- 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~---~~~G~v~i~~~d~~~----~~~~y-------~~~~~i~~~i~~~-------- 60 (268)
.+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| .+.+++++++...
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 4789999999999999999999999 899999999976521 22222 3345777766421
Q ss_pred -----------H-HHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 61 -----------D-VMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 61 -----------~-~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+ .++.+++.+. .+.....+ +++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~ 184 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRI------GGNLVKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-S 184 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhh------hcccccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 1 3334444322 12222222 2899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++++.+.+++++
T Consensus 185 ~l~~~~~~~~tiii~ 199 (226)
T cd03234 185 TLSQLARRNRIVILT 199 (226)
T ss_pred HHHHHHHCCCEEEEE
Confidence 888887667777655
No 176
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.8e-21 Score=184.29 Aligned_cols=125 Identities=13% Similarity=0.205 Sum_probs=95.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------CCCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------~~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 478999999999999999999999999999999997542 122333 22345655432
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++... ++..+.++ +++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 175 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDID------PRAKVATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-T 175 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCC------ccCchhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 3456777777643 12333222 3999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++++.|.+++++
T Consensus 176 ~l~~l~~~g~tvii~ 190 (491)
T PRK10982 176 IIRKLKERGCGIVYI 190 (491)
T ss_pred HHHHHHhCCCEEEEE
Confidence 888887667777665
No 177
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=8.6e-21 Score=158.96 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=84.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-Cc------ccChhhhhhHHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV------AMDIRELISLEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-~~------~~~i~~~i~~~~~m~~~~L~ 69 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++. |
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---------L- 96 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK---------L- 96 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---------c-
Confidence 4689999999999999999999999999999999875421 12333 22 234444432 1
Q ss_pred CCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. . .+..++.||++++. +|+++|+|||++ ||+.++..+. ++++++.++|.+++++
T Consensus 97 -S--------~-G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 151 (173)
T cd03230 97 -S--------G-GMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS 151 (173)
T ss_pred -C--------H-HHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 1 1 11234899999999 999999999999 9999998888 8888887667776655
No 178
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=1.2e-20 Score=155.82 Aligned_cols=125 Identities=21% Similarity=0.284 Sum_probs=102.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCC-------CCCcccChhhhhh-------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENF-------DYPVAMDIRELIS------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~-------~y~~~~~i~~~i~------- 58 (268)
.++|+||+|||||||+..++|+-.|++|+|.+.|++... .++ ...|+++--|++.
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 579999999999999999999999999999999986522 222 2245666666654
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+||+.. +..++.++| ++|||+++. .|++++.||||- ||-.+-..+. ++
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~R------l~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DL 188 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKR------LTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DL 188 (228)
T ss_pred CccccHHHHHHHHHHHhCcccc------cccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HH
Confidence 6789999999987 566666554 999999999 999999999998 9999999999 88
Q ss_pred HHHHHh-CCCeEEEEE
Q 024360 123 VDHLKS-RNFNVCAVY 137 (268)
Q Consensus 123 l~~l~~-~~~~ii~v~ 137 (268)
+-.++. .|.|+++|.
T Consensus 189 lF~lnre~G~TlVlVT 204 (228)
T COG4181 189 LFALNRERGTTLVLVT 204 (228)
T ss_pred HHHHhhhcCceEEEEe
Confidence 888875 488877663
No 179
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.4e-21 Score=170.79 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=95.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-Cc-------ccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~~-------~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++.+++.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~ 116 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI 116 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence 3689999999999999999999999999999999876531 12333 11 124544432
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+|+.+. .+..+.++| +.||++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 117 ~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l 187 (280)
T PRK13633 117 PPEEIRERVDESLKKVGMYEY------RRHAPHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTI 187 (280)
T ss_pred CHHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 4566777788654 233443333 999999999 999999999999 9999999888 889
Q ss_pred HHHHh-CCCeEEEE
Q 024360 124 DHLKS-RNFNVCAV 136 (268)
Q Consensus 124 ~~l~~-~~~~ii~v 136 (268)
+++++ .|.+++++
T Consensus 188 ~~l~~~~g~tillv 201 (280)
T PRK13633 188 KELNKKYGITIILI 201 (280)
T ss_pred HHHHHhcCCEEEEE
Confidence 98865 47777655
No 180
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=1.5e-20 Score=166.42 Aligned_cols=126 Identities=18% Similarity=0.248 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-----CcC-----------CCCCC-Cc--------ccChhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-PV--------AMDIRELI 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-----~~~-----------~~~~y-~~--------~~~i~~~i 57 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+ ... ..+.| ++ ..++.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999998865 210 12333 11 12333332
Q ss_pred -----------------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 58 -----------------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 58 -----------------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
.+.++++.+++.+.. .+.....+ +++||++++. +|+++|+|||++ ||+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----~~~~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTR-----IDDLPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVS 182 (253)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHcCCChhh-----hhcCchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHH
Confidence 145667777775311 22333222 3999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 114 THVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
++..+. ++++++.+ .+.++|++
T Consensus 183 ~~~~l~-~~l~~~~~~~~~tii~v 205 (253)
T TIGR02323 183 VQARLL-DLLRGLVRDLGLAVIIV 205 (253)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEE
Confidence 998888 88888764 47787766
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.84 E-value=1e-20 Score=168.40 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=92.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccCCcC------------CCCCC-------CcccChhhhhh--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-------PVAMDIRELIS-- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d~~~------------~~~~y-------~~~~~i~~~i~-- 58 (268)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 478999999999999999999999886 4999999975421 12233 22356665543
Q ss_pred ----------------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-
Q 024360 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ- 109 (268)
Q Consensus 59 ----------------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~- 109 (268)
+.++++.+++.+. .+..+..+ +++||++++. +|+++|+|||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~ 182 (262)
T PRK09984 111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF------AHQRVSTLSGGQQQRVAIARALMQ--QAKVILADEPIAS 182 (262)
T ss_pred hcccccchhhhcccccHHHHHHHHHHHHHcCCHHH------HhCCccccCHHHHHHHHHHHHHhc--CCCEEEecCcccc
Confidence 3456666777532 23333333 3999999999 999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 110 IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
||+.++..+. ++++++++ .|.++|++
T Consensus 183 LD~~~~~~l~-~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 183 LDPESARIVM-DTLRDINQNDGITVVVT 209 (262)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 9999998888 88888875 47777655
No 182
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.9e-21 Score=183.81 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4789999999999999999999999999999999876421 22333 22345655542
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+.... ...+... ++++++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 186 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIREL 186 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCC-chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHH
Confidence 3456778888643111 0111111 1233999999999 999999999999 9999998888 888888
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
++.|.++|++
T Consensus 187 ~~~g~tiiii 196 (501)
T PRK11288 187 RAEGRVILYV 196 (501)
T ss_pred HhCCCEEEEE
Confidence 7667777665
No 183
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=8.4e-21 Score=182.23 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-CCCCCCCcccChhhhhh----------------HHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE 65 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-~~~~~y~~~~~i~~~i~----------------~~~~m~~ 65 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+.+++++++. +.++++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999886521 11122344567777653 2346677
Q ss_pred hCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 66 LGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+++.+. ++..+..+ +++||++++. +|+++|||||++ ||+.+++.++ ++++.+++.|.+++++
T Consensus 131 lgL~~~------ld~~~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV 199 (549)
T PRK13545 131 ADIGKF------IYQPVKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI 199 (549)
T ss_pred cCChhH------hhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 777653 23333332 3899999999 999999999999 9999998888 8888887667777655
No 184
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.9e-21 Score=160.26 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=83.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------CCCCC-Cc------ccChhhhhhHHHHHHHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV------AMDIRELISLEDVMEEL 66 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------~~~~y-~~------~~~i~~~i~~~~~m~~~ 66 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 4789999999999999999999999999999999875421 12222 11 22333322111
Q ss_pred CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
+ ...+..++.||++++. +|+++|+|||++ ||+.++..+. +++++++++ +.+++++
T Consensus 101 -l-----------S~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~ 157 (178)
T cd03229 101 -L-----------SGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV 157 (178)
T ss_pred -C-----------CHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 0 1112234899999999 999999999999 9999998888 888888765 6777655
No 185
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=169.14 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=94.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC--------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~--------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ....++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP 113 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence 4689999999999999999999999999999999976531 12333 11245666553
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++.+++... .+..+..+ ++.||++++. +|+++|+|||++ ||+.++..+. ++++
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~ 184 (277)
T PRK13642 114 REEMIKRVDEALLAVNMLDF------KTREPARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIH 184 (277)
T ss_pred HHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 2455666677543 23333222 2999999999 999999999999 9999999988 8888
Q ss_pred HHHhC-CCeEEEE
Q 024360 125 HLKSR-NFNVCAV 136 (268)
Q Consensus 125 ~l~~~-~~~ii~v 136 (268)
++.++ |.+++++
T Consensus 185 ~l~~~~g~tiil~ 197 (277)
T PRK13642 185 EIKEKYQLTVLSI 197 (277)
T ss_pred HHHHhcCCEEEEE
Confidence 88764 7787665
No 186
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=1.8e-20 Score=166.22 Aligned_cols=128 Identities=14% Similarity=0.237 Sum_probs=92.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC----CCceEEEeccCCcC-----CCCCC---------CcccChhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELI------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~----~~G~v~i~~~d~~~-----~~~~y---------~~~~~i~~~i------- 57 (268)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... +.+.| .+..++.+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 47899999999999999999999999 99999999876421 12322 1223433322
Q ss_pred -------hHHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 58 -------SLEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 58 -------~~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
.+.++++.+++.+.... ++..... +++.||++++. +|+++|||||++ ||+.+++.+. +++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L 183 (254)
T PRK10418 110 GKPADDATLTAALEAVGLENAARV---LKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLL 183 (254)
T ss_pred CCChHHHHHHHHHHHcCCCChhhh---hhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHH
Confidence 14567788888652100 1222222 23899999999 999999999999 9999998888 888
Q ss_pred HHHHhC-CCeEEEE
Q 024360 124 DHLKSR-NFNVCAV 136 (268)
Q Consensus 124 ~~l~~~-~~~ii~v 136 (268)
+.+.++ |.+++++
T Consensus 184 ~~~~~~~g~til~~ 197 (254)
T PRK10418 184 ESIVQKRALGMLLV 197 (254)
T ss_pred HHHHHhcCcEEEEE
Confidence 888654 7777655
No 187
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=9.4e-21 Score=183.72 Aligned_cols=136 Identities=15% Similarity=0.267 Sum_probs=100.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C---------cccChhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELI------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~---------~~~~i~~~i------- 57 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +..++.+++
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 4789999999999999999999999999999998865421 12333 2 123454432
Q ss_pred ------------hHHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 58 ------------~~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
.++++++.+++. .. ++..+..+ +++||++++. +|++|||||||+ ||+.+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~ 441 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNH------AEQAARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARND 441 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCC------ccCccccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHH
Confidence 134677788886 33 23333333 3999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+. +++++++++|.++|++ +|.......++
T Consensus 442 l~-~~l~~l~~~g~tiIiv----sHd~~~i~~~~ 470 (510)
T PRK15439 442 IY-QLIRSIAAQNVAVLFI----SSDLEEIEQMA 470 (510)
T ss_pred HH-HHHHHHHhCCCEEEEE----CCCHHHHHHhC
Confidence 88 8999987777777665 46554444444
No 188
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=169.60 Aligned_cols=125 Identities=19% Similarity=0.276 Sum_probs=96.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC---ceEEEeccCCcC-------CCCCC--------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~---G~v~i~~~d~~~-------~~~~y--------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+.| ....++++++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~ 113 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence 4789999999999999999999999987 899999976531 22333 12346777653
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. ++..+.++| ++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~ 184 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDY------IDSEPANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-K 184 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-H
Confidence 3456777888654 233333333 999999999 999999999999 9999999888 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
+++.++++ |.+++++
T Consensus 185 ~l~~l~~~~g~tvli~ 200 (282)
T PRK13640 185 LIRKLKKKNNLTVISI 200 (282)
T ss_pred HHHHHHHhcCCEEEEE
Confidence 88888754 7777655
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=182.46 Aligned_cols=136 Identities=18% Similarity=0.295 Sum_probs=100.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C---------cccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~---------~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + +.+++++++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4789999999999999999999999999999999866421 22333 1 2245555331
Q ss_pred ----------------HHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 ----------------~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
++++++.+++. +. .+..+..+ ++.||++++. +|+++|+||||+ ||+.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~ 430 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPS------MEQAIGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGA 430 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCC------ccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhH
Confidence 34667778884 33 13333333 3999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 115 ~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+..+. ++++.++++|.+++++ +|.......++
T Consensus 431 ~~~l~-~~l~~~~~~g~tviiv----tHd~~~~~~~~ 462 (501)
T PRK10762 431 KKEIY-QLINQFKAEGLSIILV----SSEMPEVLGMS 462 (501)
T ss_pred HHHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhC
Confidence 99988 8999987668787655 45554444443
No 190
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=182.53 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC----------CcccChhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y----------~~~~~i~~~i------- 57 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 4789999999999999999999999999999998865421 12222 1224454442
Q ss_pred ---------------hHHHHHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 58 ---------------~~~~~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
.+.++++.+++. .. .+..+..+ ++.||++++. +|+++|+||||+ ||+.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~ 431 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPS------REQLIMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGA 431 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCC------ccCccccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhH
Confidence 144677778884 22 13333333 3999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 115 ~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++.++ ++++++++.|.+++++ +|.......++
T Consensus 432 ~~~l~-~~l~~l~~~g~tviiv----sHd~~~~~~~~ 463 (501)
T PRK11288 432 KHEIY-NVIYELAAQGVAVLFV----SSDLPEVLGVA 463 (501)
T ss_pred HHHHH-HHHHHHHhCCCEEEEE----CCCHHHHHhhC
Confidence 99988 8999998778887666 46655444444
No 191
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=182.82 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=99.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccCCcC--------CCCCC----------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d~~~--------~~~~y----------~~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| .+.+++.+++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 4789999999999999999999998 599999999865421 12333 12345544332
Q ss_pred ----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhH
Q 024360 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (268)
Q Consensus 59 ----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~ 115 (268)
+.++++.+++.+.. .+..+..+ +++||++++. +|+++||||||+ ||+.++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~ 441 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTAS-----PELAIARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAK 441 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCC-----cccccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHH
Confidence 34567778875211 13333332 3999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 116 ~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+.+. ++++.++++|.+++++ +|.......++
T Consensus 442 ~~l~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~ 472 (506)
T PRK13549 442 YEIY-KLINQLVQQGVAIIVI----SSELPEVLGLS 472 (506)
T ss_pred HHHH-HHHHHHHHCCCEEEEE----CCCHHHHHHhC
Confidence 9988 8999987778787655 46655444444
No 192
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.2e-20 Score=164.91 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=87.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhhH----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~~---------- 59 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..++++++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~ 108 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV 108 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence 4689999999999999999999999999999999865421 12333 11 2466666531
Q ss_pred ---------HHHHHHh--CCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 60 ---------EDVMEEL--GLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 60 ---------~~~m~~~--~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
.++++.+ ++... ++..... +++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~ 179 (234)
T cd03251 109 EEAARAANAHEFIMELPEGYDTV------IGERGVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-A 179 (234)
T ss_pred HHHHHHcCcHHHHHhcccCccee------eccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-H
Confidence 1222222 22211 1111222 23999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++.+ +.+++++
T Consensus 180 ~l~~~~~-~~tii~~ 193 (234)
T cd03251 180 ALERLMK-NRTTFVI 193 (234)
T ss_pred HHHHhcC-CCEEEEE
Confidence 8888864 6676655
No 193
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-20 Score=168.17 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=92.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC--------CceEEEeccCCcC-------CCCCC-------CcccChhhhhh--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~--------~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~-- 58 (268)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.| ....++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 468999999999999999999999998 8999999876421 11222 12345666542
Q ss_pred ------------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHh---------cCCCCCEEEEe
Q 024360 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELD---------NYLDDDYLVFD 105 (268)
Q Consensus 59 ------------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~---------~~~~p~~lilD 105 (268)
+.++++.+++.+. ++..... .+++||++++ . +|+++|+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLD 179 (272)
T PRK13547 108 RYPHARRAGALTHRDGEIAWQALALAGATAL------VGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLD 179 (272)
T ss_pred ccccccccccCCHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEc
Confidence 2345666777543 2222222 2389999999 5 89999999
Q ss_pred CCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 106 CPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 106 EP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
||++ ||+.++..+. ++++++.++ +.+++++
T Consensus 180 EPt~~LD~~~~~~l~-~~l~~~~~~~~~tviii 211 (272)
T PRK13547 180 EPTAALDLAHQHRLL-DTVRRLARDWNLGVLAI 211 (272)
T ss_pred CccccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 9999 9999999888 888888765 7777655
No 194
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3e-20 Score=164.21 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC-------CCCCC-------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 109 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence 47899999999999999999999974 69999999876421 22333 23456766653
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+... ..++..+.++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l 185 (250)
T PRK14247 110 NRLVKSKKELQERVRWALEKAQLWDEVK--DRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKI 185 (250)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcchh--hhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 234556667643100 0022223222 3999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 186 ~-~~l~~~~~-~~tiii~ 201 (250)
T PRK14247 186 E-SLFLELKK-DMTIVLV 201 (250)
T ss_pred H-HHHHHHhc-CCEEEEE
Confidence 8 88888854 6666554
No 195
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=2.5e-20 Score=166.72 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=93.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC---------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y---------~~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999876421 12222 23345555431
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++.+.. .+..... .++.||++++. +|+++|+|||++ ||..++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDDSV-----LDKRPPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCChhH-----hhCCCccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH
Confidence 45677777875311 1222222 23899999999 999999999999 9999998888
Q ss_pred HHHHHHHHhC-CCeEEEE
Q 024360 120 RNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~-~~~ii~v 136 (268)
++++.++++ +.+++++
T Consensus 192 -~~l~~~~~~~~~tiiiv 208 (268)
T PRK10419 192 -RLLKKLQQQFGTACLFI 208 (268)
T ss_pred -HHHHHHHHHcCcEEEEE
Confidence 888888654 6777655
No 196
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=166.42 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=89.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 113 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK 113 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence 46899999999999999999999987 4899999987542 122333 11 256666653
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.. ....+....++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (254)
T PRK14273 114 IHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKI 189 (254)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHH
Confidence 22334445542110 00122333233 3999999999 999999999999 999999988
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
+ ++++++++ +.+++++
T Consensus 190 ~-~~l~~~~~-~~tvii~ 205 (254)
T PRK14273 190 E-ELIINLKE-SYTIIIV 205 (254)
T ss_pred H-HHHHHHhc-CCEEEEE
Confidence 8 88888864 6666554
No 197
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-20 Score=166.05 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=89.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+.. |++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 112 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR 112 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence 4789999999999999999999864 58999999987642 122333 11 136666654
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.-. ..++....+ ++++||++++. +|+++|+|||++ ||+.++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 188 (253)
T PRK14242 113 VNGVKDKAYLAERVERSLRHAALWDEVK--DRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKI 188 (253)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCchhhh--HHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 223445556532100 001222222 23899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 189 ~-~~l~~~~~-~~tvii~ 204 (253)
T PRK14242 189 E-ELIHELKA-RYTIIIV 204 (253)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 8 88888854 6666555
No 198
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.6e-21 Score=176.89 Aligned_cols=128 Identities=13% Similarity=0.233 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC----CCCceEEEeccCCcC-----------CCCCC---------CcccChhhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~----~~~G~v~i~~~d~~~-----------~~~~y---------~~~~~i~~~i~ 58 (268)
.+++|+|+||||||||+++|+|+++ +++|+|.+.|.+... ..+.| .+.+++.+++.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM 113 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence 4789999999999999999999997 489999999987521 12333 23345543321
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
+.++++.+||.+.... ++.++.++| ++||++|+. +|+++|+||||+ ||+.+
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~---l~~~p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~ 188 (326)
T PRK11022 114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR---LDVYPHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTI 188 (326)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH---HhCCchhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHH
Confidence 4577888888642100 233333333 999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEE
Q 024360 115 HVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 115 ~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
+..++ ++++.+++ .|.++++|
T Consensus 189 ~~~il-~lL~~l~~~~g~til~i 210 (326)
T PRK11022 189 QAQII-ELLLELQQKENMALVLI 210 (326)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE
Confidence 99999 99999875 47787766
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=3.6e-21 Score=184.16 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=116.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cC----------------CCCCCCcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~----------------~~~~y~~~~~i~~~i~------ 58 (268)
.++||+|++||||||+.++|+|+.+|++|.|.++|.+. .. ...++.|..||++.+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 47899999999999999999999999999999999762 10 1112256677877765
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.++|++.- +++++.++| ++|||||+. +|+++|+|||++ ||+..+..++
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~-----l~ryP~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl- 469 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEF-----LDRYPHELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL- 469 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHH-----HhcCchhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-
Confidence 66779999999753 455555544 999999999 999999999999 9999999999
Q ss_pred HHHHHHHhC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 121 NFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 121 ~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
+++++++++ |.+.++| ||.+.-...+|+ .+.|+.+..+++..
T Consensus 470 nLl~~lq~e~g~t~lfI----SHDl~vV~~i~d---------------rv~vm~~G~iVE~G 512 (539)
T COG1123 470 NLLKDLQEELGLTYLFI----SHDLAVVRYIAD---------------RVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHhCCEEEEE----eCCHHHHHhhCc---------------eEEEEECCeEEEeC
Confidence 999999865 8888776 355443333332 55677766665543
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=1.9e-20 Score=181.02 Aligned_cols=137 Identities=14% Similarity=0.190 Sum_probs=98.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccCCcC--------CCCCC----------CcccChhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------ 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d~~~--------~~~~y----------~~~~~i~~~i------ 57 (268)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..+.| .+..++++++
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 47899999999999999999999995 89999998865421 12222 2223444332
Q ss_pred ---------------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhH
Q 024360 58 ---------------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (268)
Q Consensus 58 ---------------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~ 115 (268)
.+.++++.+++.... .+..+..+ +++||++++. +|+++|+||||+ ||+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~ 439 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTAS-----PFLPIGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAK 439 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCC-----ccCccccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHH
Confidence 145667778875311 12222222 3999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 116 ~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+.++ ++++.+++.|.++|++ +|.......++
T Consensus 440 ~~l~-~~l~~l~~~g~tviiv----sHd~~~~~~~~ 470 (500)
T TIGR02633 440 YEIY-KLINQLAQEGVAIIVV----SSELAEVLGLS 470 (500)
T ss_pred HHHH-HHHHHHHhCCCEEEEE----CCCHHHHHHhC
Confidence 8888 8899987777787655 46655444444
No 201
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3e-20 Score=164.43 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=90.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc---------CCCCCC-------CcccChhhhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS--- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~---------~~~~~y-------~~~~~i~~~i~--- 58 (268)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...+.| .+..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 47899999999999999999999987 4999999987643 122333 22356666553
Q ss_pred ---------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 59 ---------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
+.++++.+++.+.-. ..++....++ +++||++++. +|+++|+|||++ ||+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 111 KLNGLVKSKKELDERVEWALKKAALWDEVK--DRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred HhcCccCCHHHHHHHHHHHHHHcCCccchh--hhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence 233455566532100 0012222222 2899999999 999999999999 9999998
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 024360 117 PVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v 136 (268)
.+. ++++++++ +.+++++
T Consensus 187 ~l~-~~l~~~~~-~~tiii~ 204 (253)
T PRK14267 187 KIE-ELLFELKK-EYTIVLV 204 (253)
T ss_pred HHH-HHHHHHhh-CCEEEEE
Confidence 888 88888865 5666555
No 202
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.83 E-value=2.7e-20 Score=171.34 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=95.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccCCcC-----------CCCCC---------CcccChhhhhh-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d~~~-----------~~~~y---------~~~~~i~~~i~- 58 (268)
.+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..+.| .+.+++.+++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 122 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence 478999999999999999999999986 9999999987521 12333 23345554331
Q ss_pred ----------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhH
Q 024360 59 ----------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (268)
Q Consensus 59 ----------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~ 115 (268)
+.++++.+++.+.. .. ++.++.++ +++||++|+. +|+++|+||||+ ||+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~-~~--~~~~p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEAR-KR--MKMYPHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCChH-HH--hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHH
Confidence 45677778875421 00 23333333 3999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEE
Q 024360 116 VPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 116 ~~i~~~ll~~l~~~-~~~ii~v 136 (268)
..++ +++++++++ |.++++|
T Consensus 198 ~~i~-~lL~~l~~~~g~til~i 218 (330)
T PRK09473 198 AQIM-TLLNELKREFNTAIIMI 218 (330)
T ss_pred HHHH-HHHHHHHHHcCCEEEEE
Confidence 9999 899998764 7787766
No 203
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=2.7e-20 Score=165.52 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=90.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE-----------EeccCCcC-------C--CCCC-Ccc-----cC----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-PVA-----MD---- 52 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~~~d~~~-------~--~~~y-~~~-----~~---- 52 (268)
-+++|+||||||||||+++|+|+++|++|+|. +.|.+... . .+.| ++. .+
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 106 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGK 106 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHH
Confidence 36899999999999999999999999999996 56655421 0 1111 110 11
Q ss_pred hhhh-------hhHHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 53 IREL-------ISLEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 53 i~~~-------i~~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++ -.+.++++.+++.+. .+..... .++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 107 i~~~l~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l 178 (255)
T cd03236 107 VGELLKKKDERGKLDELVDQLELRHV------LDRNIDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNA 178 (255)
T ss_pred HHHHhchhHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHH
Confidence 1111 126778888888653 1222222 23899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++++.+++++
T Consensus 179 ~-~~l~~l~~~~~tIIii 195 (255)
T cd03236 179 A-RLIRELAEDDNYVLVV 195 (255)
T ss_pred H-HHHHHHHhcCCEEEEE
Confidence 8 8889887667777655
No 204
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.83 E-value=3.4e-20 Score=155.34 Aligned_cols=110 Identities=23% Similarity=0.270 Sum_probs=83.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Ccc-----cChhhhhhHHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELISLEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~~-----~~i~~~i~~~~~m~~~~L~ 69 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++ .++++++ |
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l----------L- 97 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------L- 97 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC----------c-
Confidence 4689999999999999999999999999999999876421 22333 221 1333332 1
Q ss_pred CCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
...+..+++||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++
T Consensus 98 ----------S~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~ 152 (173)
T cd03246 98 ----------SGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVI 152 (173)
T ss_pred ----------CHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 1112244899999999 999999999999 9999999888 8888887667777655
No 205
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.83 E-value=3.2e-20 Score=164.24 Aligned_cols=137 Identities=19% Similarity=0.271 Sum_probs=96.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++ .+|+|.++|.++.. ..+.| .+..++++++.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~ 101 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE 101 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence 4789999999999999999999986 48999999976521 12233 12345665543
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhc-----CCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~-----~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..... .+++||++++. -++|+++|+|||++ ||+.++..+. +
T Consensus 102 ~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~ 174 (248)
T PRK03695 102 AVASALNEVAEALGLDDK------LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-R 174 (248)
T ss_pred HHHHHHHHHHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 3567777787643 1222222 23899999984 11469999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++.+++++ +|.......++
T Consensus 175 ~L~~~~~~~~tvi~~----sH~~~~~~~~~ 200 (248)
T PRK03695 175 LLSELCQQGIAVVMS----SHDLNHTLRHA 200 (248)
T ss_pred HHHHHHhCCCEEEEE----ecCHHHHHHhC
Confidence 888887667777655 35544333433
No 206
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=165.57 Aligned_cols=139 Identities=18% Similarity=0.290 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.+.|.++. ...+.| ++ ..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999999875 7999999886542 122333 11 246666554
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++.... ...++..... ++++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 194 (258)
T PRK14268 119 IHGANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE 194 (258)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcch--hhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH
Confidence 23466666663210 0001222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++ +.+++++ +|...+...++
T Consensus 195 -~~l~~l~~-~~tiiiv----sH~~~~~~~~~ 220 (258)
T PRK14268 195 -DLIMNLKK-DYTIVIV----THNMQQAARIS 220 (258)
T ss_pred -HHHHHHhh-CCEEEEE----ECCHHHHHHhC
Confidence 88888864 6676555 45544333333
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.83 E-value=2.6e-20 Score=163.25 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=87.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhhH----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~~---------- 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 108 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV 108 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence 4689999999999999999999999999999999976421 12333 11 2456665431
Q ss_pred HHHHHHhCCCCCC-----ChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.+.++..++.... ++...++....++ +++||++++. +|+++|+|||++ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 185 (237)
T cd03252 109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC 185 (237)
T ss_pred HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 1122222221100 0000012222222 2899999999 999999999999 9999998888 8888886
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ |.+++++
T Consensus 186 ~-~~tiii~ 193 (237)
T cd03252 186 A-GRTVIII 193 (237)
T ss_pred C-CCEEEEE
Confidence 4 7776555
No 208
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2.7e-20 Score=162.03 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=88.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| ++ ..++++++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~ 120 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence 4689999999999999999999999999999999875421 12222 11 124554442
Q ss_pred --------HHHHHHHh--CCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 --------~~~~m~~~--~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+ |+.+. ++....++ +++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 121 ~~~~~~~~~~~~l~~l~~gl~~~------~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 191 (226)
T cd03248 121 KEAAQKAHAHSFISELASGYDTE------VGEKGSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-Q 191 (226)
T ss_pred HHHHHHcCcHHHHHhccccccch------hhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 22344445 44432 12222222 3999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++.+++ +.+++++
T Consensus 192 ~l~~~~~-~~tii~~ 205 (226)
T cd03248 192 ALYDWPE-RRTVLVI 205 (226)
T ss_pred HHHHHcC-CCEEEEE
Confidence 8888865 5666555
No 209
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.3e-20 Score=164.04 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=94.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-------CcccChhhhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-------~~~~~i~~~i~--- 58 (268)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 46899999999999999999999874 69999999876421 12333 22356666653
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++.+.-. ...+..+.+ .+++||++++. +|+++|+|||++ ||+.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 186 (258)
T PRK14241 111 KLNGVRNKKDLDELVEKSLRGANLWNEVK--DRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLA 186 (258)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhh--hHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHH
Confidence 233455566632100 001222222 23999999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+. ++++++++ +.+++++ +|...+...++
T Consensus 187 l~-~~l~~~~~-~~tviiv----sH~~~~~~~~~ 214 (258)
T PRK14241 187 IE-DLINELKQ-DYTIVIV----THNMQQAARVS 214 (258)
T ss_pred HH-HHHHHHhc-CCEEEEE----ecCHHHHHHhC
Confidence 88 88888854 5666554 45544333333
No 210
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=185.43 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=101.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----------CCCCCC---------CcccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY---------PVAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----------~~~~~y---------~~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+.+++.+++.
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999987542 112333 23356665532
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+||.+.. .+..+.++| ++||++|+. +|++||+||||+ ||+.++..++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~-----~~~~~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~ 503 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEH-----AWRYPHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII 503 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHH-----hhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH
Confidence 34677778885321 233333333 999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++ |.++|+| +|.+.....++
T Consensus 504 -~ll~~l~~~~g~tvi~i----sHdl~~v~~~~ 531 (623)
T PRK10261 504 -NLLLDLQRDFGIAYLFI----SHDMAVVERIS 531 (623)
T ss_pred -HHHHHHHHhcCCEEEEE----eCCHHHHHHhC
Confidence 999998764 7787766 45554333333
No 211
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.83 E-value=3.5e-20 Score=160.57 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=90.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
-+++|+||||||||||+++|+|+.+|++|+|.+.|.+... ..+.| ++ ..++.+++. +
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI 110 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999865421 12223 11 136666652 3
Q ss_pred HHHHHHhCCCCCCChh----------hhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNGGLI----------YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~----------~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++.+++.+..... ...+... +..++.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 187 (220)
T cd03245 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL 187 (220)
T ss_pred HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 4556666664320000 0001111 1233899999999 999999999999 9999998888 8888886
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+. .+++++
T Consensus 188 ~~-~tii~~ 195 (220)
T cd03245 188 GD-KTLIII 195 (220)
T ss_pred CC-CEEEEE
Confidence 53 566554
No 212
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.1e-20 Score=165.22 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=90.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 119 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence 4789999999999999999999986 58999999987642 112333 11 146665543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+... ..++....+ +++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 195 (260)
T PRK10744 120 LFEKLSRAEMDERVEWALTKAALWNEVK--DKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRI 195 (260)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhH--HHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHH
Confidence 234566666632100 001222222 23899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.++|++
T Consensus 196 ~-~~L~~~~~-~~tiii~ 211 (260)
T PRK10744 196 E-ELITELKQ-DYTVVIV 211 (260)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 8 88888854 5666544
No 213
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.9e-20 Score=157.71 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=87.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC---CCCceEEEeccCCcC------CCCCC-------CcccChhhhhhHHHHHHHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL 66 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~---~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~~~~~m~~~ 66 (268)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| .+.+++++++.....+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--- 110 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC--- 110 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh---
Confidence 4789999999999999999999999 899999999976532 22333 2345777776532211
Q ss_pred CCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 67 GLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
..... ...... +..++.||++++. +|+++|+|||++ ||+.+++.+. ++++++.++ +.+++++
T Consensus 111 ~~~~~-----~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 111 KGNEF-----VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS 175 (202)
T ss_pred ccccc-----hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 11111 011111 1233899999999 999999999999 9999998888 888888654 5554443
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=4.2e-20 Score=178.62 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC--CCceEEEeccCCcC--------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~--~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 107 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL 107 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence 47899999999999999999999986 79999999875421 22333 12345554432
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++..........+...+ .++++||++|+. +|+++|+||||+ ||+.++..+. +++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 184 (500)
T TIGR02633 108 PGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DII 184 (500)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 3456777787643100001111111 223999999999 999999999999 9999998888 889
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
+++++.|.+++++
T Consensus 185 ~~l~~~g~tviii 197 (500)
T TIGR02633 185 RDLKAHGVACVYI 197 (500)
T ss_pred HHHHhCCCEEEEE
Confidence 9887777777665
No 215
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.9e-20 Score=169.62 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=99.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC----CCCceEEEeccCCcC-----------CCCCC---------CcccChhhhh-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~----~~~G~v~i~~~d~~~-----------~~~~y---------~~~~~i~~~i- 57 (268)
.+++|+|+||||||||+++|+|+++ +++|+|.++|.+... ..+.| .+..++.+++
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~ 113 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM 113 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence 4689999999999999999999986 589999999976521 12333 1223443332
Q ss_pred ---------------------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-
Q 024360 58 ---------------------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ- 109 (268)
Q Consensus 58 ---------------------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~- 109 (268)
.+.++++.+||.+... .++..+.++ +++||++|+. +|+++|+||||+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~---~~~~~p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~ 188 (330)
T PRK15093 114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD---AMRSFPYELTEGECQKVMIAIALAN--QPRLLIADEPTNA 188 (330)
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH---HHhCCchhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCc
Confidence 1456677888864210 023333333 3999999999 999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
||+.++..++ +++++++++ |.++++| +|.+.....++
T Consensus 189 LD~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~ 226 (330)
T PRK15093 189 MEPTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWA 226 (330)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhC
Confidence 9999999988 999998764 7888766 45554443433
No 216
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=1.4e-19 Score=154.52 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=88.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEeccCCcC----CCCCC-------CcccChhhhhhHHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~~~d~~~----~~~~y-------~~~~~i~~~i~~~~~m~~~~L~ 69 (268)
.+++|+||||||||||+++|+|++ +|.+|+|.++|.++.. ..+.| .+..++++++.....+. .
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~-- 111 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--G-- 111 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--c--
Confidence 478999999999999999999999 9999999999987632 22333 23356666554221110 0
Q ss_pred CCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+..- +..++.||++++. +|+++|+|||++ ||+.++..+. ++++++++++.+++++
T Consensus 112 --------LS~G-~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 167 (194)
T cd03213 112 --------LSGG-ERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS 167 (194)
T ss_pred --------CCHH-HHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 1111 2233899999999 999999999999 9999998888 8888887667777655
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.7e-20 Score=162.22 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=87.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| ++ ..++++++. +
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~ 109 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV 109 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence 368999999999999999999999999999999986542 122333 11 124555443 2
Q ss_pred HHHHHHhCCCCCC-----ChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.+.++.+++.... ++...++..... .++.||++++. +|+++|+|||++ ||+.++..++ ++++.++
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 186 (229)
T cd03254 110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM 186 (229)
T ss_pred HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 2233333332110 000001111122 23999999999 999999999999 9999998888 8888885
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
++.+++++
T Consensus 187 -~~~tii~~ 194 (229)
T cd03254 187 -KGRTSIII 194 (229)
T ss_pred -CCCEEEEE
Confidence 46777655
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.7e-20 Score=165.04 Aligned_cols=139 Identities=18% Similarity=0.248 Sum_probs=94.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Ccc-----cChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PVA-----MDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~~-----~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| ++. .++++++.
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 119 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence 4689999999999999999999987 58999999987642 122333 211 26666554
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+++...- ...++....++ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~- 194 (269)
T PRK14259 120 INGYTGDMDELVERSLRKAAVWDEC--KDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE- 194 (269)
T ss_pred hcCCcHHHHHHHHHHHHHhCCcchh--hhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 12345555553210 00012222222 3899999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++ +.+++++ +|.......++
T Consensus 195 ~~l~~~~~-~~tiiiv----tH~~~~~~~~~ 220 (269)
T PRK14259 195 ETMHELKK-NFTIVIV----THNMQQAVRVS 220 (269)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhc
Confidence 88888854 5666554 45544333333
No 219
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5e-20 Score=164.62 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=90.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 125 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence 47899999999999999999999874 89999999876421 12333 11 135666553
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++...-. ..++..... ++++||++++. +|+++|+|||++ ||+.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~ 201 (267)
T PRK14235 126 IHGLARSKAELDEIVETSLRKAGLWEEVK--DRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAK 201 (267)
T ss_pred hcccccchHHHHHHHHHHHHHcCCchhhh--HHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHH
Confidence 234555666642100 001222222 23999999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
+. ++++.+++ +.+++++
T Consensus 202 l~-~~L~~l~~-~~tiiiv 218 (267)
T PRK14235 202 VE-ELIDELRQ-NYTIVIV 218 (267)
T ss_pred HH-HHHHHHhc-CCeEEEE
Confidence 88 88888865 5666554
No 220
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=7.2e-20 Score=158.59 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=90.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-Cc-----ccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-----AMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-~~-----~~~i~~~i~------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~ 107 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK 107 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence 3689999999999999999999999999999998865421 22333 11 346666654
Q ss_pred --HHHHHHHhCCCCCC-----ChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH-HH
Q 024360 59 --LEDVMEELGLGPNG-----GLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV 123 (268)
Q Consensus 59 --~~~~m~~~~L~~~g-----~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~-ll 123 (268)
..++++.+++.+.- +.-..++..+.. ++++||++++. +|+++|+|||++ ||+.++..+++. ++
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll 185 (218)
T cd03290 108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL 185 (218)
T ss_pred HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 23444555543210 000000111222 23999999999 999999999999 999999888842 77
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
+.+++.+.+++++
T Consensus 186 ~~~~~~~~tii~~ 198 (218)
T cd03290 186 KFLQDDKRTLVLV 198 (218)
T ss_pred HHHhcCCCEEEEE
Confidence 7776667777655
No 221
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=4.9e-20 Score=153.13 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=81.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.... +.++. .-...++-+. +..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--------~~~~~-----~~~~i~~~~q------LS~G- 86 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA--------SPRDA-----RRAGIAMVYQ------LSVG- 86 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC--------CHHHH-----HhcCeEEEEe------cCHH-
Confidence 47899999999999999999999999999999998764321 11100 0000111000 1111
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+..++.+|++++. +|+++|+|||++ ||+.+++.+. ++++++++++.+++++
T Consensus 87 ~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 138 (163)
T cd03216 87 ERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI 138 (163)
T ss_pred HHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 1233899999999 999999999999 9999999888 8888887667777655
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=4.8e-20 Score=179.44 Aligned_cols=128 Identities=14% Similarity=0.238 Sum_probs=93.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC-----------CCCCC-Cc--------ccChhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~-----------~~~~y-~~--------~~~i~~~i 57 (268)
.+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..++| ++ ..++++++
T Consensus 36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~ 115 (529)
T PRK15134 36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL 115 (529)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence 46899999999999999999999986 79999999876421 12333 22 12333322
Q ss_pred h-----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 58 S-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 58 ~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
. +.++++.+++..... ..+..+.++| ++||++|+. +|+++|+||||+ ||+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~---~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~ 190 (529)
T PRK15134 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAK---RLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVS 190 (529)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH---HHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHH
Confidence 1 456677778854210 0133333333 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 114 THVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
++..++ +++++++++ |.++|+|
T Consensus 191 ~~~~l~-~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 191 VQAQIL-QLLRELQQELNMGLLFI 213 (529)
T ss_pred HHHHHH-HHHHHHHHhcCCeEEEE
Confidence 999988 899998754 7777665
No 223
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=6.5e-20 Score=178.15 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=98.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe-ccC---Cc----------CCCCCC-------CcccChhhhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-------PVAMDIRELIS--- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~-~~d---~~----------~~~~~y-------~~~~~i~~~i~--- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+. |.+ +. ...+.| .+.+++++++.
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 4689999999999999999999999999999995 531 10 122333 23457776653
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++...... ..++..+..+ +++||++++. +|+++|+||||+ ||+.+++.++
T Consensus 391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~ 467 (520)
T TIGR03269 391 GLELPDELARMKAVITLKMVGFDEEKAE-EILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT 467 (520)
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCccch-hhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH
Confidence 2356777888641000 0013333333 3999999999 999999999999 9999999988
Q ss_pred HHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++++++ |.+++++ +|.......++
T Consensus 468 -~~l~~l~~~~g~tvi~v----sHd~~~~~~~~ 495 (520)
T TIGR03269 468 -HSILKAREEMEQTFIIV----SHDMDFVLDVC 495 (520)
T ss_pred -HHHHHHHHHcCcEEEEE----eCCHHHHHHhC
Confidence 888888654 7777665 35544333443
No 224
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.7e-20 Score=162.51 Aligned_cols=139 Identities=13% Similarity=0.225 Sum_probs=93.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence 4689999999999999999999987 47999999997642 112333 11 246666654
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++...- ...++....+ .+++||++++. +|+++|+|||++ ||+.+++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14251 111 IAGVKDKELIDQRVEESLKQAAIWKET--KDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEI 186 (251)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCCcch--HHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHH
Confidence 12344555653110 0001222222 23899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++++++ +.+++++ +|...+...++
T Consensus 187 ~-~~l~~~~~-~~tiiii----sH~~~~~~~~~ 213 (251)
T PRK14251 187 E-ETLMELKH-QYTFIMV----THNLQQAGRIS 213 (251)
T ss_pred H-HHHHHHHc-CCeEEEE----ECCHHHHHhhc
Confidence 8 88888854 5666555 35544333333
No 225
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.8e-20 Score=161.35 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=87.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhhH----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELISL---------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~~---------- 59 (268)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| + ...++++++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 107 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence 4689999999999999999999999999999998865421 11222 1 12466665531
Q ss_pred HHHHHHhCCCCCC-----ChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.+.++..++...- ++-..++....+ .+++||++|+. +|+++|+|||++ ||+.++..+. ++++.++
T Consensus 108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 184 (236)
T cd03253 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS 184 (236)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 1222222221100 000000111112 23999999999 999999999999 9999998888 8888886
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.+++++
T Consensus 185 ~-~~tiii~ 192 (236)
T cd03253 185 K-GRTTIVI 192 (236)
T ss_pred C-CCEEEEE
Confidence 6 7777655
No 226
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.6e-20 Score=162.90 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=108.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cCCCCCCCcccChhhhhh----------------HHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVME 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~~~~~y~~~~~i~~~i~----------------~~~~m~ 64 (268)
-.+||||+||||||||+|+|+|.++|++|+|.+.|.-. -.-..++.|.+|.|+++. ++++.+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIie 133 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIE 133 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999998532 234566788899999876 577777
Q ss_pred HhCCCCCCChhhhHhhhhhhHH----HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 024360 65 ELGLGPNGGLIYCMEHLEDNLD----DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (268)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~~~ls----~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~ 139 (268)
.-+||+. ++..++++| ..||-+++...+|++||+||-.+ -|..-++... +.++.+.+++.++++|
T Consensus 134 FaELG~f------i~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V--- 203 (249)
T COG1134 134 FAELGDF------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV--- 203 (249)
T ss_pred HHHHHHH------hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE---
Confidence 8888887 567776665 44555555444999999999999 9998888877 7777776666777666
Q ss_pred ccccccCHHHHHH
Q 024360 140 DSQFITDVTKFIS 152 (268)
Q Consensus 140 d~~~~~d~~~~~s 152 (268)
||...-...+|+
T Consensus 204 -SHd~~~I~~~Cd 215 (249)
T COG1134 204 -SHDLGAIKQYCD 215 (249)
T ss_pred -ECCHHHHHHhcC
Confidence 466655566664
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.82 E-value=6.4e-21 Score=185.61 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=98.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----------CCCCCC-C--------cccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-P--------VAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----------~~~~~y-~--------~~~~i~~~i~----- 58 (268)
.+++|+||||||||||+++|+|+++ ++|+|+++|.++. ...+.| + +..++++++.
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 4689999999999999999999985 8999999986542 122333 1 2346666542
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.. .+..+.++| ++||++++. +|+++|+||||+ ||+.+++.+
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPET-----RHRYPAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHH-----HhcCCccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHH
Confidence 23566777775210 233333333 999999999 999999999999 999999998
Q ss_pred HHHHHHHHHhC-CCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+ +++++++++ |.++|++ +|.......++
T Consensus 465 ~-~~l~~~~~~~~~tvi~v----sHd~~~~~~~~ 493 (529)
T PRK15134 465 L-ALLKSLQQKHQLAYLFI----SHDLHVVRALC 493 (529)
T ss_pred H-HHHHHHHHhhCCEEEEE----eCCHHHHHHhc
Confidence 8 889988764 7777666 45554444443
No 228
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.82 E-value=6.7e-20 Score=157.08 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC--CCCCCceEEEeccCCcC--------CCCCC-CcccChhhhhhHHHHHHHhCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN 71 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~--l~~~~G~v~i~~~d~~~--------~~~~y-~~~~~i~~~i~~~~~m~~~~L~~~ 71 (268)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| ++........++.+.++.+.-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~-- 104 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG-- 104 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc--
Confidence 47899999999999999999999 47999999999976532 12334 2221112222333333221100
Q ss_pred CChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 72 GGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 72 g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+. ..+..++.||++++. +|+++|+||||+ ||+.++..+. ++++++++++.+++++
T Consensus 105 ------LS-~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~ 160 (200)
T cd03217 105 ------FS-GGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII 160 (200)
T ss_pred ------CC-HHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 11 112233899999999 999999999999 9999998888 8888887667777655
No 229
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.82 E-value=5.1e-20 Score=161.46 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=87.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhhH----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~~---------- 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV 109 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence 4789999999999999999999999999999999866421 22333 11 2356655531
Q ss_pred HHHHHHhCCCCCC-----ChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.+.++..++.... ++-..++..+.+ .++.||++++. +|+++|+|||++ ||+.++..+. ++++.++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~ 186 (238)
T cd03249 110 EEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDRAM 186 (238)
T ss_pred HHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 1122222221100 000001111122 23899999999 999999999999 9999998888 8888886
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+|.+++++
T Consensus 187 -~g~~vi~~ 194 (238)
T cd03249 187 -KGRTTIVI 194 (238)
T ss_pred -CCCEEEEE
Confidence 57776655
No 230
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.82 E-value=1.1e-19 Score=157.28 Aligned_cols=134 Identities=10% Similarity=-0.069 Sum_probs=89.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE-EeccCCc-CCCCCCCcccChhhhhhH------------H-HHHHHhC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPA-AENFDYPVAMDIRELISL------------E-DVMEELG 67 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~-i~~~d~~-~~~~~y~~~~~i~~~i~~------------~-~~m~~~~ 67 (268)
.+++|+||||||||||+++|+|+++|++|+|. +.|.... .....+++.+++++++.. . .+.+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ 93 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999997 6654321 112234566788887752 1 1122233
Q ss_pred CCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH-HHHHhCCCeEEEEEec
Q 024360 68 LGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV-DHLKSRNFNVCAVYLL 139 (268)
Q Consensus 68 L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll-~~l~~~~~~ii~v~l~ 139 (268)
+... .+..+..+| ++||++++. +|+++|+|||++ +|+.++..+. +.+ +.+++ .+++++
T Consensus 94 l~~~------~~~~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~~--~~ii~v--- 159 (213)
T PRK15177 94 LEQC------YTDRVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQQ--KGLIVL--- 159 (213)
T ss_pred hhHH------hhchHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhhC--CcEEEE---
Confidence 3321 223333332 899999999 999999999998 9999998887 544 44432 345444
Q ss_pred ccccccCHHHHH
Q 024360 140 DSQFITDVTKFI 151 (268)
Q Consensus 140 d~~~~~d~~~~~ 151 (268)
+|.......++
T Consensus 160 -sH~~~~~~~~~ 170 (213)
T PRK15177 160 -THNPRLIKEHC 170 (213)
T ss_pred -ECCHHHHHHhc
Confidence 46654443433
No 231
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=5.8e-20 Score=180.82 Aligned_cols=124 Identities=16% Similarity=0.240 Sum_probs=94.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cCCCCCCCcccChhhhhh-----------HHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~~~~~y~~~~~i~~~i~-----------~~~~m~~~~L~ 69 (268)
.+++|+||||||||||+++|+|+++|++|+|.+. ... ..+........++++++. ..++++.+++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 4789999999999999999999999999999874 211 111222234567777654 35677788886
Q ss_pred CCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 70 PNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
+. ++..+..+| ++||++|+. +|+++||||||+ ||+.++..+. +++++++++ +.++++|
T Consensus 445 ~~------~~~~~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 510 (590)
T PRK13409 445 RL------LDKNVKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV 510 (590)
T ss_pred HH------HhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 43 344444433 999999999 999999999999 9999998888 999998754 7777665
No 232
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=6.2e-20 Score=154.74 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=78.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++ .| ++... | . .
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----~~~~q~~~---------------L--S--------g- 74 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----VYKPQYID---------------L--S--------G- 74 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----EEEcccCC---------------C--C--------H-
Confidence 47899999999999999999999999999999988642 22 11110 1 1 1
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCC-CeEEEE
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAV 136 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~-~~ii~v 136 (268)
.+..++.+|++++. +|+++|+|||++ ||+.++..+. ++++++++++ .+++++
T Consensus 75 Gq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv 128 (177)
T cd03222 75 GELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV 128 (177)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE
Confidence 11234899999999 999999999999 9999998888 8888876554 676655
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.3e-19 Score=152.82 Aligned_cols=118 Identities=15% Similarity=0.247 Sum_probs=88.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEeccCCc---CCCCCC-------CcccChhhhhhHHHHHHHhCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~~~d~~---~~~~~y-------~~~~~i~~~i~~~~~m~~~~L~~ 70 (268)
-+++|+||||||||||+++|+|.. +|++|+|.++|.+.. ...+.| .+..++++++.....++ .
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~--- 108 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--G--- 108 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh--c---
Confidence 478999999999999999999986 489999999987642 122322 33467777765432221 1
Q ss_pred CCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+..- +..++.||++++. +|+++|+|||++ +|+.++..++ ++++++++.+.+++++
T Consensus 109 -------LSgG-e~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 164 (192)
T cd03232 109 -------LSVE-QRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT 164 (192)
T ss_pred -------CCHH-HhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 1111 1233899999999 999999999999 9999998888 8888887667777655
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=187.07 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=95.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC---------------------cCCCCCC---------CcccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY---------PVAMD 52 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~---------------------~~~~~~y---------~~~~~ 52 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+. ....++| .+.++
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 47899999999999999999999999999999876411 0012333 23467
Q ss_pred hhhhhh-----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc
Q 024360 53 IRELIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 53 i~~~i~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~ 109 (268)
+++++. +.++++.+|+.+.... ++..+.++| ++||++|+. +|++||+||||+
T Consensus 123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~---~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~ 197 (623)
T PRK10261 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTI---LSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTT 197 (623)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhH---HhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCC
Confidence 777653 3456778888531100 233333333 999999999 999999999999
Q ss_pred -CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 110 -IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 110 -LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
||+.++..++ +++++++++ |.++|+|
T Consensus 198 ~LD~~~~~~l~-~ll~~l~~~~g~tvi~i 225 (623)
T PRK10261 198 ALDVTIQAQIL-QLIKVLQKEMSMGVIFI 225 (623)
T ss_pred ccCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 9999999988 999999754 7787665
No 235
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.8e-20 Score=161.79 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=94.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--C---CCceEEEeccCCcC---------CCCCC-------CcccChhhhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~~~d~~~---------~~~~y-------~~~~~i~~~i~--- 58 (268)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence 3689999999999999999999986 3 68999999976521 12223 22356666553
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++...... .++..... ++++||++++. +|+++|+|||++ ||+.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~ 186 (252)
T PRK14256 111 KLNGRVNRSEADEIVESSLKRVALWDEVKD--RLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLK 186 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhH--HhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 2344556665421000 01122222 23899999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 118 VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+. ++++++++ +.+++++ +|...+...++
T Consensus 187 l~-~~l~~~~~-~~tiiiv----sH~~~~~~~~~ 214 (252)
T PRK14256 187 IE-ELIEELKE-KYTIIIV----THNMQQAARVS 214 (252)
T ss_pred HH-HHHHHHHh-CCcEEEE----ECCHHHHHhhC
Confidence 88 88888865 4666544 45544333333
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=7.8e-20 Score=177.60 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=92.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEe-----------------------ccCC-------c---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A--------- 41 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~-----------------------~~d~-------~--------- 41 (268)
-+++|+||||||||||+++|+|++ +|++|+|.+. |.+. .
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 468999999999999999999997 7999999986 2111 0
Q ss_pred -CCCCCC--------CcccChhhhhh----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHH
Q 024360 42 -AENFDY--------PVAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLA 90 (268)
Q Consensus 42 -~~~~~y--------~~~~~i~~~i~----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la 90 (268)
...+.| .+..++++++. +.++++.+++... .+..+.++| ++||
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~iA 180 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR------ITHIARDLSGGEKQRVVLA 180 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh------hhcCcccCCHHHHHHHHHH
Confidence 111222 22346666553 3456777888643 233333333 9999
Q ss_pred HHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 91 EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 91 ~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
++|+. +|+++||||||+ ||+.++..++ ++++++.+ .|.++++|
T Consensus 181 ~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 181 RQLAK--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT 225 (520)
T ss_pred HHHhc--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence 99999 999999999999 9999999988 88888864 47777665
No 237
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=4e-20 Score=181.96 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=95.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE-----------EeccCCcC---------CCCC----C---Ccc---cC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFD----Y---PVA---MD 52 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~~~d~~~---------~~~~----y---~~~---~~ 52 (268)
.+++|+||||||||||+++|+|+++|+.|+|. +.|.+... ..+. | .+. .+
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 47899999999999999999999999999997 77765421 1111 1 111 26
Q ss_pred hhhhhh-------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 53 i~~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+++++. ++++++.+++... ++....++| ++||++++. +|+++||||||+ ||+..+..+
T Consensus 180 v~e~l~~~~~~~~~~~~l~~l~l~~~------~~~~~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l 251 (590)
T PRK13409 180 VRELLKKVDERGKLDEVVERLGLENI------LDRDISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNV 251 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHH
Confidence 666653 5678888888754 244443333 899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 252 ~-~~i~~l~~-g~tvIiv 267 (590)
T PRK13409 252 A-RLIRELAE-GKYVLVV 267 (590)
T ss_pred H-HHHHHHHC-CCEEEEE
Confidence 8 89999977 8777665
No 238
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=6.5e-20 Score=197.87 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=107.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc------CCCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~------~~~~~y-------~~~~~i~~~i~----------- 58 (268)
.++||+||||||||||+|+|+|+++|++|+|.+.|.++. .+.++| .+.++++|++.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 478999999999999999999999999999999998763 123444 23578888764
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++++.++|.+. .+....++| +.+|+|++. +|+++|||||++ ||+.+++.++ ++++++
T Consensus 2046 ~~~~~v~~lLe~lgL~~~------~dk~~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l 2116 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLSLY------ADRLAGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSI 2116 (2272)
T ss_pred HHHHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHH
Confidence 2356777787654 233333332 899999999 999999999999 9999999988 899998
Q ss_pred HhCCCeEEEEEecccccccCHHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFISG 153 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~ 153 (268)
+++|.++|++ +|.+.+...+|++
T Consensus 2117 ~~~g~TIILt----TH~mee~e~lcDr 2139 (2272)
T TIGR01257 2117 IREGRAVVLT----SHSMEECEALCTR 2139 (2272)
T ss_pred HhCCCEEEEE----eCCHHHHHHhCCE
Confidence 7668777644 5777776666653
No 239
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.2e-20 Score=161.26 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=89.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence 47899999999999999999999875 78999999876521 12333 11 246666553
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.- ....+.....+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 186 (251)
T PRK14270 111 IHGIKDKKELDKIVEWALKKAALWDEV--KDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKI 186 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCchhh--hhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 12455566553210 00012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 187 ~-~~L~~~~~-~~tiiiv 202 (251)
T PRK14270 187 E-DLMVELKK-EYTIVIV 202 (251)
T ss_pred H-HHHHHHHh-CCeEEEE
Confidence 8 88888865 4666544
No 240
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=1.1e-19 Score=155.94 Aligned_cols=131 Identities=24% Similarity=0.256 Sum_probs=85.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc-CCcCCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~-d~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~-- 70 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|. -...+...+. ..++++++. ..+..+.+++..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDL 110 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHH
Confidence 478999999999999999999999999999998871 0001111111 345555543 122333333311
Q ss_pred ----CCCh--h--hhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 ----NGGL--I--YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ----~g~~--~--~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+-. . ...+... +..+++||++++. +|+++|+|||++ ||+.+++.+++.+++.+.+.+.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 111 EILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred HhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1000 0 0001111 1233999999999 999999999999 999999888844677665556777665
No 241
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.1e-20 Score=176.72 Aligned_cols=137 Identities=14% Similarity=0.202 Sum_probs=98.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-C---------cccChhhh-----h--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-P---------VAMDIREL-----I-- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~---------~~~~i~~~-----i-- 57 (268)
-+++|+||||||||||+++|+|+.+|++|+|.+.|.++.. ..+.| + +..++.++ +
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 4789999999999999999999999999999999866421 11333 1 22333222 1
Q ss_pred ---------------hHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhH
Q 024360 58 ---------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (268)
Q Consensus 58 ---------------~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~ 115 (268)
.+.++++.++++... .+..+..+| ++||++++. +|+++|+||||+ ||+.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPG-----HRTQIGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAK 427 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCC-----cccccccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHH
Confidence 134566666774211 133333333 999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 116 ~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
..++ ++++.+++.|.+++++ +|.......++
T Consensus 428 ~~~~-~~l~~l~~~~~tvi~v----sHd~~~~~~~~ 458 (491)
T PRK10982 428 FEIY-QLIAELAKKDKGIIII----SSEMPELLGIT 458 (491)
T ss_pred HHHH-HHHHHHHHCCCEEEEE----CCChHHHHhhC
Confidence 9988 8899987778888666 46655444444
No 242
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=159.88 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=90.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC---CCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~---~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM 108 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence 4689999999999999999999974 689999999876521 12333 11 136666552
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+.-... .+....+ ++++||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~ 183 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDK--LKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-E 183 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHH--hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 23556777774310000 1122222 23999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++.+ +.+++++
T Consensus 184 ~l~~~~~-~~tiii~ 197 (246)
T PRK14269 184 LLKELSH-NLSMIMV 197 (246)
T ss_pred HHHHHhC-CCEEEEE
Confidence 8888864 6776655
No 243
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=160.51 Aligned_cols=128 Identities=18% Similarity=0.291 Sum_probs=89.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 109 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999999874 89999999876421 22333 11 2466665541
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++...- ....+....++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14262 110 IHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRI 185 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHH
Confidence 2234445553210 00122233222 2999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 186 ~-~~l~~~~~-~~tili~ 201 (250)
T PRK14262 186 E-KLLEELSE-NYTIVIV 201 (250)
T ss_pred H-HHHHHHhc-CcEEEEE
Confidence 8 88888865 5666555
No 244
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1e-19 Score=153.24 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=98.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---C------CCCCCCcccChhhhhh----------------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---A------ENFDYPVAMDIRELIS---------------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---~------~~~~y~~~~~i~~~i~---------------- 58 (268)
.++++||+|||||||+++++|+.+|..|+|.++|.... . ++-...|.+++.|++.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 57899999999999999999999999999999997541 1 2334466788888876
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCC
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~ 131 (268)
+.+++..+||+... ++++-++ ++.|||||+- +|+++++|||.. +|..+++.+-.-+++-.+..|+
T Consensus 113 a~q~l~~VgL~~~~------~~~i~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk 184 (259)
T COG4525 113 AHQMLALVGLEGAE------HKYIWQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184 (259)
T ss_pred HHHHHHHhCccccc------ccceEeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 67888899998764 3333333 3899999999 999999999999 9999998877444444455677
Q ss_pred eEEEE
Q 024360 132 NVCAV 136 (268)
Q Consensus 132 ~ii~v 136 (268)
.+++|
T Consensus 185 ~~lli 189 (259)
T COG4525 185 QVLLI 189 (259)
T ss_pred eEEEE
Confidence 77665
No 245
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=161.83 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=97.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-C-----cccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P-----VAMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~-----~~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| + ...++.+++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 114 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR 114 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence 47899999999999999999999986 79999999976521 12333 1 1356766654
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+++.+..... .+....+ +++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~--~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~- 189 (261)
T PRK14263 115 LNRYKGDLGDRVKHALQGAALWDEVKDK--LKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE- 189 (261)
T ss_pred hcCchHHHHHHHHHHHHHcCCchhhhhh--hhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34567777775321100 1112222 23899999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++ +.+++++ +|.......++
T Consensus 190 ~~l~~~~~-~~tii~i----sH~~~~i~~~~ 215 (261)
T PRK14263 190 ELMVELKK-DYTIALV----THNMQQAIRVA 215 (261)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHhC
Confidence 88888854 5666544 45544433443
No 246
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=160.01 Aligned_cols=128 Identities=19% Similarity=0.254 Sum_probs=88.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC---CCC--CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~---l~~--~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+ .++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~ 109 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999997 454 58999999876521 12333 11 135655543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.-.. .++.....+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 185 (250)
T PRK14245 110 VNGVKDNAFIRQRVEETLKGAALWDEVKD--KLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKV 185 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCcchhh--hhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 2345666676431000 012222222 2999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 186 ~-~~l~~~~~-~~tiiiv 201 (250)
T PRK14245 186 E-ELIHELKK-DYTIVIV 201 (250)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 8 88888854 6666555
No 247
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.81 E-value=2.4e-19 Score=158.50 Aligned_cols=131 Identities=11% Similarity=0.151 Sum_probs=90.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC--CCCCCceEEEeccCCcC------C--CCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~--l~~~~G~v~i~~~d~~~------~--~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... . .+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 47899999999999999999998 57999999998875421 1 1111 11223333321
Q ss_pred ----------------HHHHHHHhCCCCCCChhhhHh-hhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 59 ----------------LEDVMEELGLGPNGGLIYCME-HLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 59 ----------------~~~~m~~~~L~~~g~~~~~~~-~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
+.++++.+++.+........+ ...+ ..+++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~ 191 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKIIA 191 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 245667777753110000001 1111 223999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEE
Q 024360 120 RNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (268)
++++++.+++.++|++
T Consensus 192 -~~l~~~~~~g~tii~~ 207 (252)
T CHL00131 192 -EGINKLMTSENSIILI 207 (252)
T ss_pred -HHHHHHHhCCCEEEEE
Confidence 8888887667777655
No 248
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.2e-19 Score=155.92 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=94.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC--------CCCC---------CcccChhh------------
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PVAMDIRE------------ 55 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~--------~~~y---------~~~~~i~~------------ 55 (268)
-+|+||||||||||+++++|...|.+|.+.+.|...... .+++ ....+++|
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 379999999999999999999999999999988755321 1222 11122222
Q ss_pred ---------hhhHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 56 ---------LISLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 56 ---------~i~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
.-.+..+++.+|+.... ++....+| +.||||++. +|.++|||||++ ||+..+....
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la------~r~~~~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll 211 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLA------DRPFGSLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL 211 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhc------cCchhhcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH
Confidence 22367788889988653 33333333 899999999 999999999999 9999998888
Q ss_pred HHHHHHHHhC--CCeEEEEEecccccccCH
Q 024360 120 RNFVDHLKSR--NFNVCAVYLLDSQFITDV 147 (268)
Q Consensus 120 ~~ll~~l~~~--~~~ii~v~l~d~~~~~d~ 147 (268)
+.+.++... +.++++| +|+..|.
T Consensus 212 -~~l~~~~~~~~~~~ll~V----tHh~eEi 236 (257)
T COG1119 212 -NRLEELAASPGAPALLFV----THHAEEI 236 (257)
T ss_pred -HHHHHHhcCCCCceEEEE----Ecchhhc
Confidence 777777643 5566666 4665543
No 249
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=162.15 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=94.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~~--- 59 (268)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+.. ...+.| ++ ..++++++..
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 126 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE 126 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence 4689999999999999999999986 58999999987652 122333 11 1366666542
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.+.-. ..++..+..+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~--~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14237 127 RAGVKDKKVLDEIVETSLKQAALWDQVK--DDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQL 202 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCchhh--hhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 22345555532100 0012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++++++ +.+++++ +|.......++
T Consensus 203 ~-~~l~~~~~-~~tiii~----tH~~~~~~~~~ 229 (267)
T PRK14237 203 E-ETMFELKK-NYTIIIV----THNMQQAARAS 229 (267)
T ss_pred H-HHHHHHhc-CCEEEEE----ecCHHHHHHhc
Confidence 8 88888854 5666554 35544333333
No 250
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=159.98 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=92.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-----CceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
-+++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. ..+.| ++ ..++++++..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence 468999999999999999999999987 6999999876421 22333 11 1256665531
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.+. +...++....++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 186 (251)
T PRK14249 111 MLGTTAQSRLDEVVEKSLRQAALWDE--VKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRI 186 (251)
T ss_pred hcCCChhhHHHHHHHHHHHHhCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 122333444311 000012222222 2999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (268)
. ++++.++ ++.+++++ +|.......+
T Consensus 187 ~-~~l~~~~-~~~tiliv----sh~~~~~~~~ 212 (251)
T PRK14249 187 E-ELMQELK-QNYTIAIV----THNMQQAARA 212 (251)
T ss_pred H-HHHHHHh-cCCEEEEE----eCCHHHHHhh
Confidence 8 8888885 46777655 4554433333
No 251
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-19 Score=160.89 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=88.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--C---CCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++ | ++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR 118 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence 4689999999999999999999987 3 5899999987642 122333 11 125666543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.-. ..++..... .++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 194 (259)
T PRK14274 119 IHGTKNKKKLQEIVEKSLKDVALWDEVK--DRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKI 194 (259)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhh--hhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 223444556542100 001222222 22899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 195 ~-~~l~~~~~-~~tiiiv 210 (259)
T PRK14274 195 E-ELILKLKE-KYTIVIV 210 (259)
T ss_pred H-HHHHHHhc-CCEEEEE
Confidence 8 88888865 5666555
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-19 Score=150.46 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=81.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCCh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~~~~i~~~i~~~~~m~~~~L~~~g~~ 74 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| ++...+.+ .++.+.+ |
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----L------ 97 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----L------ 97 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh----h------
Confidence 4789999999999999999999999999999999876421 12222 22111111 1121111 1
Q ss_pred hhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 75 ~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.. .+..++.||++++. +|+++|+|||++ ||+.++..+. ++++++++ +.+++++
T Consensus 98 ----S~-G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~ 151 (171)
T cd03228 98 ----SG-GQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI 151 (171)
T ss_pred ----CH-HHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence 11 12234899999999 999999999999 9999998888 88888854 5666554
No 253
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=162.37 Aligned_cols=128 Identities=19% Similarity=0.282 Sum_probs=88.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+.+ |++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 127 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK 127 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 4689999999999999999999864 689999999876421 22333 11 125666543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++... ...-.+....++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l 203 (268)
T PRK14248 128 YAGERRKSVLDEIVEESLTKAALWDE--VKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKI 203 (268)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCCcc--hHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHH
Confidence 1233444554311 000012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 204 ~-~~l~~~~~-~~tiii~ 219 (268)
T PRK14248 204 E-ELITELKE-EYSIIIV 219 (268)
T ss_pred H-HHHHHHhc-CCEEEEE
Confidence 7 88888865 5666544
No 254
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.1e-19 Score=149.27 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCC-------------CCCCcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN-------------FDYPVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~-------------~~y~~~~~i~~~i~----------- 58 (268)
.++.|.||||||||||+++++|+++|.+|+|++.|..+.... .+..+.+|++|++.
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~ 108 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA 108 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCch
Confidence 357799999999999999999999999999999987654321 12245678888875
Q ss_pred --HHHHHHHhCCCCCCChhhhHhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 59 --LEDVMEELGLGPNGGLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 59 --~~~~m~~~~L~~~g~~~~~~~~~~~~l-s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
+.++++.+||.....+. |.....+++ +++|||-++. .++++|+|||++ ||......+- .++..-...|.-|
T Consensus 109 ~~i~~Al~~vgL~g~~dlp-~~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiV 183 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLP-VGQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIV 183 (209)
T ss_pred hhHHHHHHHcCcccccccc-hhhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEE
Confidence 67888899998764222 112222222 2999999998 999999999999 9999986655 6666555544433
No 255
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=159.75 Aligned_cols=128 Identities=21% Similarity=0.308 Sum_probs=89.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+.+ |++|+|.+.|.+.. ...+.| ++ ..++++++.
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~ 111 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK 111 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence 4689999999999999999999986 47999999886531 112333 11 125555442
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++.+.-.. .++....+ .+++||++++. +|+++|+|||++ ||+.++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~ 187 (251)
T PRK14244 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGD--RLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNV 187 (251)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCchhhh--HhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 2345677777541000 01222222 23899999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
+. ++++.+++ +.+++++
T Consensus 188 l~-~~l~~~~~-~~tiiii 204 (251)
T PRK14244 188 IE-NLIQELKK-NFTIIVV 204 (251)
T ss_pred HH-HHHHHHhc-CCeEEEE
Confidence 87 88888854 6777655
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.81 E-value=1.2e-19 Score=152.54 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=82.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc------CCCCCC-Ccc-----cChhhhhhHHHHHHHhCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------AENFDY-PVA-----MDIRELISLEDVMEELGLGP 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~------~~~~~y-~~~-----~~i~~~i~~~~~m~~~~L~~ 70 (268)
.+++|+||||||||||+++|+|+.+|++|+|.++|.++. ...+.| ++. .++++++ +
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i------------~ 96 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------G 96 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh------------c
Confidence 468999999999999999999999999999999987542 122333 221 2343333 1
Q ss_pred CCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. .+.. .+..++.||++++. +|+++|+|||++ ||+.++..++ +++++++ ++.+++++
T Consensus 97 ~-----~LS~-G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~ 153 (178)
T cd03247 97 R-----RFSG-GERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWI 153 (178)
T ss_pred c-----cCCH-HHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence 1 0111 12234899999999 999999999999 9999998888 8888885 46666655
No 257
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=159.65 Aligned_cols=128 Identities=19% Similarity=0.307 Sum_probs=87.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
-+++|+||||||||||+++|+|++++ ++|+|.+.|.++.. ..+.| ++ ..++++++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~ 109 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999998763 68999999876531 12333 11 2466666542
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.+. +...++.....+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 185 (250)
T PRK14240 110 THGIKDKKKLDEIVEKSLKGAALWDE--VKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKI 185 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchh--hHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 223334444210 000012222222 2999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 186 ~-~~l~~~~~-~~tiii~ 201 (250)
T PRK14240 186 E-ELIQELKK-DYTIVIV 201 (250)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 7 88888854 6676555
No 258
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=162.85 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=91.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~~--- 59 (268)
-+++|+|+||||||||+++|+|+++ |++|+|.++|.+.. ...+.| ++ ..++++++..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 130 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK 130 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence 4789999999999999999999987 69999999987542 122333 11 1366666541
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.. ++...++....++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l 206 (271)
T PRK14238 131 IHGIKDKKTLDEIVEKSLRGAAIWD--ELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKV 206 (271)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcc--hHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHH
Confidence 11222222210 0000012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++++++ +.+++++ +|.......++
T Consensus 207 ~-~~l~~~~~-~~tiiiv----sH~~~~i~~~~ 233 (271)
T PRK14238 207 E-ELVQELKK-DYSIIIV----THNMQQAARIS 233 (271)
T ss_pred H-HHHHHHHc-CCEEEEE----EcCHHHHHHhC
Confidence 8 88888865 5666544 45544333333
No 259
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=159.13 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=87.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CC---CCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~---~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+. +| ++|+|.+.|.++. ...+.| ++ ..++++++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR 111 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence 468999999999999999999985 46 5899999987642 112333 11 2467766541
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.+.- ...++....++ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14239 112 LKGIKDKQVLDEAVEKSLKGASIWDEV--KDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKI 187 (252)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCchhH--HHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHH
Confidence 1234444443210 00012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++.+ +.+++++
T Consensus 188 ~-~~l~~~~~-~~tii~~ 203 (252)
T PRK14239 188 E-ETLLGLKD-DYTMLLV 203 (252)
T ss_pred H-HHHHHHhh-CCeEEEE
Confidence 8 88888865 5666554
No 260
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=161.38 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=90.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| ++ ..++++++.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence 4689999999999999999999987 689999998876421 12223 11 126666654
Q ss_pred -----------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 59 -----------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+.++++.+++.+.-.. .++..+.. ++++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~--~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~- 220 (285)
T PRK14254 146 IQGYDGDIDERVEESLRRAALWDEVKD--QLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE- 220 (285)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCchhHH--HHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-
Confidence 2345666666431000 01222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEE
Q 024360 121 NFVDHLKSRNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (268)
+++++++++ .+++++
T Consensus 221 ~~L~~~~~~-~tiii~ 235 (285)
T PRK14254 221 DLIEELAEE-YTVVIV 235 (285)
T ss_pred HHHHHHhcC-CEEEEE
Confidence 888888653 566544
No 261
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.81 E-value=2.1e-19 Score=193.95 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=103.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.++| .+.+++++++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999987632 22333 34578888764
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++++.+||... .+..+.++| ++||+|++. +|+++|+||||+ ||+.+++.++ ++++++
T Consensus 1037 ~~~~~v~~lL~~vgL~~~------~~~~~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l 1107 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHK------RNEEAQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKY 1107 (2272)
T ss_pred HHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHH
Confidence 3457788888654 233333333 999999999 999999999999 9999999988 899988
Q ss_pred HhCCCeEEEEEecccccccCHHHHHH
Q 024360 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+ +|.+|+++ +|.+.+...+++
T Consensus 1108 ~-~g~TIIlt----THdmdea~~laD 1128 (2272)
T TIGR01257 1108 R-SGRTIIMS----THHMDEADLLGD 1128 (2272)
T ss_pred h-CCCEEEEE----ECCHHHHHHhCC
Confidence 5 47777655 455544444443
No 262
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=1.2e-19 Score=157.32 Aligned_cols=130 Identities=23% Similarity=0.250 Sum_probs=89.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-C-----cccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-P-----VAMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~-----~~~~i~~~i~---------~~ 60 (268)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+.. .+.+.| + ...++++++. +.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 110 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW 110 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence 478999999999999999999999999999999987542 122222 1 1236666553 34
Q ss_pred HHHHHhCCCCCC-----ChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGPNG-----GLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~~g-----~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+.++.+++.+.. ++...++....+ .+++||++++. +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus 111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 187 (221)
T cd03244 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK 187 (221)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 455555553210 000001112222 23899999999 999999999999 9999998887 88888754
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
+.+++++
T Consensus 188 -~~tii~~ 194 (221)
T cd03244 188 -DCTVLTI 194 (221)
T ss_pred -CCEEEEE
Confidence 5566544
No 263
>PLN03211 ABC transporter G-25; Provisional
Probab=99.80 E-value=1.1e-19 Score=180.99 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=96.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC--CceEEEeccCCcC---CCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~--~G~v~i~~~d~~~---~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|.++|. +|+|.++|.+... +.+.| .+.+|++|++.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~ 174 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence 478999999999999999999999885 8999999986521 22333 33567877664
Q ss_pred -------HHHHHHHhCCCCCCCh----hhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGL----IYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~----~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
++++++.+||.+.... ........ +..++.||++|+. +|+++++||||+ ||..++..++ +++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~ 251 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS 251 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence 3456777788542100 00001111 1233999999999 999999999999 9999999998 88999
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
++++|.+++++
T Consensus 252 l~~~g~TvI~~ 262 (659)
T PLN03211 252 LAQKGKTIVTS 262 (659)
T ss_pred HHhCCCEEEEE
Confidence 98777777655
No 264
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=157.81 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=87.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-----CceEEEeccCCcC---------CCCCC-------CcccChhhhhhHH-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-------PVAMDIRELISLE- 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~~~d~~~---------~~~~y-------~~~~~i~~~i~~~- 60 (268)
-+++|+||||||||||+++|+|+++|. +|+|.+.|.+... ..+.| .+..++++++...
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 468999999999999999999999864 8999999876421 12333 2235677666421
Q ss_pred ----------------HHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 61 ----------------DVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 61 ----------------~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
++++.+++... +...++....++| ++||++++. +|+++|+|||++ ||+.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~ 186 (252)
T PRK14272 111 KLAGIRDRDHLMEVAERSLRGAALWDE--VKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTAR 186 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCcchh--hhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHH
Confidence 11222332110 0001122233332 899999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
+. ++++++++ +.+++++
T Consensus 187 l~-~~l~~~~~-~~tiii~ 203 (252)
T PRK14272 187 IE-DLMTDLKK-VTTIIIV 203 (252)
T ss_pred HH-HHHHHHhc-CCeEEEE
Confidence 88 88888864 5666554
No 265
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.5e-19 Score=161.83 Aligned_cols=128 Identities=18% Similarity=0.280 Sum_probs=87.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...+.| ++ ..++++++..
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR 145 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence 4789999999999999999999864 49999999987542 122333 11 1266665542
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++...- ...++.....+ ++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 146 LHGINDKKQLEEIVEKSLRKAALWDEV--SDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred hcCCCcHHHHHHHHHHHHHHhCCccch--hhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 2344445543110 00012222222 3899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 222 ~-~~L~~~~~-~~tvIiv 237 (286)
T PRK14275 222 E-DLIQELRG-SYTIMIV 237 (286)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 8 88888865 5566544
No 266
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.7e-19 Score=157.78 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=94.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-----CceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-----~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+++|+ +|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 113 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK 113 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence 478999999999999999999999985 899999987642 112222 11 146665543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++...-. ...+.....+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l 189 (261)
T PRK14258 114 IVGWRPKLEIDDIVESALKDADLWDEIK--HKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKV 189 (261)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchhh--hHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHH
Confidence 233455566532100 0012222222 2999999999 999999999999 999999888
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++.+++ .+.+++++ +|.......++
T Consensus 190 ~-~~l~~l~~~~~~tiiiv----sH~~~~i~~~~ 218 (261)
T PRK14258 190 E-SLIQSLRLRSELTMVIV----SHNLHQVSRLS 218 (261)
T ss_pred H-HHHHHHHHhCCCEEEEE----ECCHHHHHHhc
Confidence 8 88888764 47777655 35554444444
No 267
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=5.7e-19 Score=155.65 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=87.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEeccCCcC--------CCCCC-Ccc------cChhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELI-------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~~~d~~~--------~~~~y-~~~------~~i~~~i-------- 57 (268)
.+++|+||||||||||+++|+|++ +|++|+|.++|.+... ..+.| +++ .+...+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 468999999999999999999995 6999999999876421 12333 111 1111100
Q ss_pred ---------------hHHHHHHHhCCCCCCChhhhH-hhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 58 ---------------SLEDVMEELGLGPNGGLIYCM-EHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 58 ---------------~~~~~m~~~~L~~~g~~~~~~-~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
.++++++.+++.+........ +...+ ..+++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~ 185 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIVA 185 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 023455555653110000000 11111 233999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEE
Q 024360 120 RNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (268)
++++++++.+.+++++
T Consensus 186 -~~l~~l~~~~~tiii~ 201 (248)
T PRK09580 186 -DGVNSLRDGKRSFIIV 201 (248)
T ss_pred -HHHHHHHhCCCEEEEE
Confidence 8888887667777655
No 268
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.3e-19 Score=157.84 Aligned_cols=139 Identities=20% Similarity=0.284 Sum_probs=94.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+|+||||||||+++|+|+++| ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 113 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR 113 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence 47899999999999999999999885 48999999875421 12333 11 246666653
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++...- ...++.....+ ++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l 189 (259)
T PRK14260 114 ISAKLPQADLDEIVESALKGAALWQEV--KDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKV 189 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 22444555653210 00022222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
. ++++++++ +.+++++ +|...+...++
T Consensus 190 ~-~~l~~~~~-~~tiii~----tH~~~~i~~~~ 216 (259)
T PRK14260 190 E-ELIHSLRS-ELTIAIV----THNMQQATRVS 216 (259)
T ss_pred H-HHHHHHhc-CCEEEEE----eCCHHHHHHhc
Confidence 8 88888865 5666555 46555444444
No 269
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.7e-19 Score=159.41 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=88.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|++++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 131 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR 131 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999874 89999999876531 12333 11 126666553
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.- ...++..... .+++||++++. +|+++|+|||++ ||+.++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l 207 (272)
T PRK14236 132 LQGINNRRVLDEAVERSLRGAALWDEV--KDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKI 207 (272)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChhH--HHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHH
Confidence 22334445553210 0001222222 23999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 208 ~-~~L~~~~~-~~tiiiv 223 (272)
T PRK14236 208 E-ELITELKS-KYTIVIV 223 (272)
T ss_pred H-HHHHHHHh-CCeEEEE
Confidence 7 88888865 5666544
No 270
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.7e-19 Score=155.90 Aligned_cols=139 Identities=17% Similarity=0.235 Sum_probs=92.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc--------CCCCCC-Cc-----ccChhhhhhH----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELISL---- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~--------~~~~~y-~~-----~~~i~~~i~~---- 59 (268)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| ++ ..++++++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~ 109 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA 109 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence 47899999999999999999999986 5999999986542 112333 11 2466665541
Q ss_pred -------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 60 -------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 60 -------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
.+.++.+++.+.- ...++..... .++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 185 (249)
T PRK14253 110 QGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE 185 (249)
T ss_pred cCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 1223344443210 0001222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++++++ +.+++++ +|.......++
T Consensus 186 -~~l~~~~~-~~tii~~----sh~~~~~~~~~ 211 (249)
T PRK14253 186 -ELMEELKK-NYTIVIV----THSMQQARRIS 211 (249)
T ss_pred -HHHHHHhc-CCeEEEE----ecCHHHHHHhC
Confidence 88998865 4666555 45544333333
No 271
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.8e-19 Score=159.52 Aligned_cols=139 Identities=14% Similarity=0.206 Sum_probs=92.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+++ |++|+|.+.|.++. ...+.| ++ ..++++++..
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 116 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR 116 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence 4789999999999999999999976 37999999987642 112333 11 1356665531
Q ss_pred ------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 60 ------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 60 ------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
.++++.+++...-. ...+....+ .++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 191 (264)
T PRK14243 117 INGYKGDMDELVERSLRQAALWDEVK--DKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE- 191 (264)
T ss_pred hcCcchHHHHHHHHHHHHhCchhhHH--HHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 12334444421000 001222222 23899999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++++.+++ +.+++++ +|...+...++
T Consensus 192 ~~L~~~~~-~~tvi~v----tH~~~~~~~~~ 217 (264)
T PRK14243 192 ELMHELKE-QYTIIIV----THNMQQAARVS 217 (264)
T ss_pred HHHHHHhc-CCEEEEE----ecCHHHHHHhC
Confidence 88888865 4666555 45554444444
No 272
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.5e-19 Score=159.83 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|++++ .+|+|.+.|.+... ..+.| ++ ..++.+++..
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 126 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR 126 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence 47899999999999999999999863 68999999876421 12333 11 1256665532
Q ss_pred ------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 60 ------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 60 ------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
.+.++.+++.... ...++..+.. .++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~- 201 (274)
T PRK14265 127 ANGYKGNLDELVEDSLRRAAIWEEV--KDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE- 201 (274)
T ss_pred hcCchHHHHHHHHHHHHHcccchhh--HHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2234444542110 0012222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEEEecccccccCHHHH
Q 024360 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (268)
++++++++ +.+++++ +|.......+
T Consensus 202 ~~L~~~~~-~~tiii~----sH~~~~~~~~ 226 (274)
T PRK14265 202 ELCLELKE-QYTIIMV----THNMQQASRV 226 (274)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHh
Confidence 88888865 5666554 4554433333
No 273
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.79 E-value=2.6e-19 Score=174.10 Aligned_cols=130 Identities=19% Similarity=0.204 Sum_probs=92.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-Cc-----ccChhhhhh----------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELIS----------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-~~-----~~~i~~~i~----------~~ 60 (268)
..++|+||+|||||||++.|+|+++|++|+|.++|.|... +.+.| +| +-|+++++. +.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~ 441 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW 441 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence 3589999999999999999999999999999999977541 23444 22 447888876 34
Q ss_pred HHHHHhCCCC------CCChhhh----Hhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGP------NGGLIYC----MEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~~----~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++++..++.. .|-.-.. .+. ..+.++.+|||++.. +|+++||||||+ ||..+.+.+. +.++.+.
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~~- 517 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAAL- 517 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-
Confidence 4555555432 1100000 011 112344999999999 999999999999 9999998888 5566553
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
.+.|+++|
T Consensus 518 ~~~TvIiI 525 (529)
T TIGR02868 518 SGKTVVVI 525 (529)
T ss_pred CCCEEEEE
Confidence 35677655
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4e-19 Score=173.07 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=85.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-C--cCCCCCCCcccChhhhhh---------------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS--------------------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~--~~~~~~y~~~~~i~~~i~--------------------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.. . ..+.....+..++++++.
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999999999987632 1 011111223344444332
Q ss_pred ---------------------------HHHHHHHhCCCCCCChhhhHhhhhh--hHHHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 59 ---------------------------~~~~m~~~~L~~~g~~~~~~~~~~~--~ls~~la~al~~~~~p~~lilDEP~~ 109 (268)
+.++++.+|+..... ......+.. ..+++||++|+. +|+++||||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~ 184 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH-YGLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN 184 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh-cCchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 335566677753210 000112221 123999999999 999999999999
Q ss_pred -CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 110 -IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 110 -LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
||+.++..+. ++++ +.+.+||+|
T Consensus 185 ~LD~~~~~~l~-~~l~---~~~~tiiiv 208 (530)
T PRK15064 185 NLDINTIRWLE-DVLN---ERNSTMIII 208 (530)
T ss_pred ccCHHHHHHHH-HHHH---hCCCeEEEE
Confidence 9999998777 6654 346777655
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=1.1e-18 Score=150.01 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=88.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-Cc-----ccChhhhhh------HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS------LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~~-----~~~i~~~i~------~~~~m 63 (268)
.+++|+||||||||||+++|+|+++|.+|+|.+.|.+.. ...+.| ++ ..++++++. .+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~ 114 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY 114 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence 468999999999999999999999999999999987542 122333 11 236666553 12233
Q ss_pred HHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+++..+. ..... +..+++||++++. +|+++|+|||++ ||+.++..+. ++++++. ++.+++++
T Consensus 115 ~~l~~~~~~-----~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~ 180 (207)
T cd03369 115 GALRVSEGG-----LNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI 180 (207)
T ss_pred HHhhccCCC-----CcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE
Confidence 333332221 01111 2233999999999 999999999999 9999998877 8888874 46676655
No 276
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.8e-19 Score=156.23 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=88.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec------cCCc-------CCCCCC-------CcccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~------~d~~-------~~~~~y-------~~~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.| .+.. ...+.| .+..++++++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 116 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence 47899999999999999999999999987766554 4331 122332 23456666554
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.-. ...+..+.. .+.+||++++. +|+++|+|||++ ||+.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l 192 (257)
T PRK14246 117 SHGIKEKREIKKIVEECLRKVGLWKEVY--DRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAI 192 (257)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccch--hhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 234555667653100 001222222 23899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. +++.++++ +.+++++
T Consensus 193 ~-~~l~~~~~-~~tiilv 208 (257)
T PRK14246 193 E-KLITELKN-EIAIVIV 208 (257)
T ss_pred H-HHHHHHhc-CcEEEEE
Confidence 7 88888864 5666555
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=1.2e-19 Score=160.08 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=97.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhh-hHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i-~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.++||+|.+||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-...|..+..
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPHELS 111 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCcccC
Confidence 468999999999999999999999999999999999853321 22222 378899999988754333333333
Q ss_pred hhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 82 EDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 82 ~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
.++ +++.|||||+. +|+++++|||++ ||...+.+++ +++.+++++ |.+.+++
T Consensus 112 GGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI 166 (268)
T COG4608 112 GGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI 166 (268)
T ss_pred chhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 222 33999999999 999999999999 9999999999 999999854 8877665
No 278
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.1e-19 Score=155.56 Aligned_cols=128 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--C---CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~--~---~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 111 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR 111 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence 4789999999999999999999865 4 58999999876421 12333 11 1366665541
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.+.++.+++... +....+..+.++| ++||++++. +|+++|+|||++ ||+.++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~--i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 187 (252)
T PRK14255 112 LAGVKDKAVLDEAVETSLKQAAIWDE--VKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQI 187 (252)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCccc--hhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 112333443211 0001223333332 899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 188 ~-~~l~~~~~-~~tii~v 203 (252)
T PRK14255 188 E-NMLLELRD-QYTIILV 203 (252)
T ss_pred H-HHHHHHHh-CCEEEEE
Confidence 8 88888865 4666555
No 279
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.2e-19 Score=157.34 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=89.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc--------CCCCCC-Cc-----ccChhhhhhH----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELISL---- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~--------~~~~~y-~~-----~~~i~~~i~~---- 59 (268)
.+++|+||||||||||+++|+|+++| ++|+|.+.|.+.. ...+.| ++ ..++++++..
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~ 127 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence 47899999999999999999999985 6999999886532 112333 11 1466665531
Q ss_pred -------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 60 -------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 60 -------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
.++++.+++...... .++..+.. .+++||++++. +|+++|+|||++ ||+.+++.+.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (276)
T PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAVKD--RLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE 203 (276)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCchhhh--HhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 234556666431000 01222222 23999999999 999999999999 9999998888
Q ss_pred HHHHHHHHhCCCeEEEE
Q 024360 120 RNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (268)
++++++++ +.+++++
T Consensus 204 -~~L~~~~~-~~tiiiv 218 (276)
T PRK14271 204 -EFIRSLAD-RLTVIIV 218 (276)
T ss_pred -HHHHHHhc-CCEEEEE
Confidence 88888865 4666555
No 280
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.79 E-value=3.1e-19 Score=177.82 Aligned_cols=129 Identities=20% Similarity=0.192 Sum_probs=90.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-------HHHHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM 63 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~-------~~~~m 63 (268)
.++|+|+||||||||+|.|+|+++|..|+|.++|.|... ++++| ++ +-+|+|+++ .++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999998732 44555 22 347888887 23333
Q ss_pred HHhCCCCCCChhhh----H---------h-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 64 EELGLGPNGGLIYC----M---------E-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 64 ~~~~L~~~g~~~~~----~---------~-~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+...+......+.. . . ...++++.+|||++.. +|+++||||||+ ||+.+.+.+. +-+.++.+
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~L~~~~~ 657 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QNLLQILQ 657 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HHHHHHhc
Confidence 33222111000000 0 0 1112344999999999 999999999999 9999998888 55666544
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
|.|+|+|
T Consensus 658 -~~T~I~I 664 (709)
T COG2274 658 -GRTVIII 664 (709)
T ss_pred -CCeEEEE
Confidence 4666555
No 281
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.79 E-value=4.5e-19 Score=174.27 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|+++++.
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 449 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHH
Confidence 3589999999999999999999999999999999987532 33444 22 346777766
Q ss_pred HHHHHHHhCCCC------CCChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGP------NGGLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ~~~~m~~~~L~~------~g~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++++..++.+ +| +-... ..+. +.++.+|||++.+ +|+++|+||||+ ||+.+...+. +.++.
T Consensus 450 i~~al~~~~l~~~i~~lp~G-ldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~ 525 (582)
T PRK11176 450 IEEAARMAYAMDFINKMDNG-LDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDE 525 (582)
T ss_pred HHHHHHHhCcHHHHHhcccc-cCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHH
Confidence 334444444321 11 00000 1111 2244999999999 999999999999 9999998888 66677
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
+.+ +.|+|+|
T Consensus 526 ~~~-~~tvI~V 535 (582)
T PRK11176 526 LQK-NRTSLVI 535 (582)
T ss_pred HhC-CCEEEEE
Confidence 644 5677655
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=7.3e-19 Score=169.61 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=90.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccCCc--------CCCCCC-Cc--------ccChhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA--------AENFDY-PV--------AMDIRELI------- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d~~--------~~~~~y-~~--------~~~i~~~i------- 57 (268)
-+++|+||||||||||+++|+|+.++ ++|+|.+.|.+.. ...+.| ++ ..++++.+
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 47899999999999999999998775 6999999986531 122333 11 11233221
Q ss_pred -------------hHHHHHHHhCCCC-CCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 58 -------------~~~~~m~~~~L~~-~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
.++++++.+++.+ . .+..+..+ +++||++++. +|+++|+||||+ ||+.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 367 IGIYQAVSDRQQKLAQQWLDILGIDKRT------ADAPFHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhh------ccCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHH
Confidence 1456777888865 3 23333333 3999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhCCC-eEEEE
Q 024360 117 PVLRNFVDHLKSRNF-NVCAV 136 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~-~ii~v 136 (268)
.+. ++++++++++. +++++
T Consensus 439 ~l~-~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 439 LVR-RFVDVLISEGETQLLFV 458 (490)
T ss_pred HHH-HHHHHHHhcCCcEEEEE
Confidence 988 99999876654 45554
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.79 E-value=1.3e-18 Score=144.96 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=80.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-C-----cccChhhhhhHHHHHHHhCCCCCCChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P-----VAMDIRELISLEDVMEELGLGPNGGLIY 76 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-~-----~~~~i~~~i~~~~~m~~~~L~~~g~~~~ 76 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+. ..+.| + ...++++++... .+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~~~tv~~nl~~~--------~~~----- 90 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLPLGTLREQLIYP--------WDD----- 90 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccccccHHHHhhcc--------CCC-----
Confidence 468999999999999999999999999999998763 12222 1 234566655321 111
Q ss_pred hHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 77 CMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 77 ~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+... +..++.+|++++. +|+++|+|||++ ||+.+++.+. ++++++ +.+++++
T Consensus 91 --~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv 144 (166)
T cd03223 91 --VLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV 144 (166)
T ss_pred --CCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE
Confidence 1111 2234999999999 999999999999 9999998877 777765 4566555
No 284
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=9.4e-19 Score=154.97 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=87.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
.+++|+||||||||||+++|+|+..+ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~ 112 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR 112 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence 46899999999999999999998753 48999999876421 12333 11 125555543
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.-. ...+.....+ +++||++++. +|+++|+|||++ ||+.++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l 188 (253)
T PRK14261 113 IHGEKNKKTLDTIVEKSLKGAALWDEVK--DRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKI 188 (253)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCchhhH--HHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 223444455532100 0012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++.+++ +.+++++
T Consensus 189 ~-~~l~~~~~-~~tvii~ 204 (253)
T PRK14261 189 E-DLIEDLKK-EYTVIIV 204 (253)
T ss_pred H-HHHHHHhh-CceEEEE
Confidence 7 88888865 4666544
No 285
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=7.5e-19 Score=155.23 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=87.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~---- 58 (268)
-+++|+||||||||||+++|+|+.. |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~ 109 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence 4789999999999999999999864 389999999976421 12333 11 124555443
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++...-. .-++.....+ ++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~--~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l 185 (250)
T PRK14266 110 IHGEDDEDFIEERVEESLKAAALWDEVK--DKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKI 185 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhHH--HHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHH
Confidence 223344555532100 0012222222 2899999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ +.+++++
T Consensus 186 ~-~~l~~~~~-~~tiii~ 201 (250)
T PRK14266 186 E-DLIHKLKE-DYTIVIV 201 (250)
T ss_pred H-HHHHHHhc-CCeEEEE
Confidence 7 88888854 6666655
No 286
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=155.57 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=87.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCc-----------CCCCCC-Cc-----ccChhhhhhH-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PV-----AMDIRELISL- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~-----------~~~~~y-~~-----~~~i~~~i~~- 59 (268)
-+++|+||||||||||+++|+|+.+| ++|+|.+.|.+.. ...+.| ++ ..++++++..
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 47899999999999999999999875 7999999875431 112333 11 1256665531
Q ss_pred ----------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 60 ----------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 60 ----------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
.++++.+++.+. +....+..... .++.||++++. +|+++|+|||++ ||+.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~ 198 (265)
T PRK14252 123 LRIRGVKRRSILEERVENALRNAALWDE--VKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATA 198 (265)
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCchh--hhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHH
Confidence 233444444310 00001222222 23899999999 999999999999 9999998
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 024360 117 PVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v 136 (268)
.+. ++++++++ +.+++++
T Consensus 199 ~l~-~~l~~l~~-~~tiiiv 216 (265)
T PRK14252 199 SIE-ELISDLKN-KVTILIV 216 (265)
T ss_pred HHH-HHHHHHHh-CCEEEEE
Confidence 888 88888865 5666555
No 287
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=2.8e-19 Score=152.49 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=106.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCC----------------CCCCcccChhhhhh---------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN----------------FDYPVAMDIRELIS--------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~----------------~~y~~~~~i~~~i~--------- 58 (268)
++.|+|.||||||||+++++|.+.|++|+|.++|.|..+.. .+-.+.+||.|++.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 57799999999999999999999999999999998874311 12245788988876
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhhHHH--HHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDD--WLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls~--~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
..+-++.+++|--..+-..+..+.+.++. .++.|..+ .|++++|||-|+ |||.+...++ ++
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~--~pkiLLLDEHTAALDPkta~~vm-~l 190 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH--PPKILLLDEHTAALDPKTAEFVM-EL 190 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC--CCcEEEecchhhcCCcchHHHHH-HH
Confidence 33444444444211111224455544444 44555555 999999999999 9999999999 77
Q ss_pred HHHHH-hCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 123 VDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 123 l~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
-.++- +.+.|.++| +|.+.+..+|=.+.++..++
T Consensus 191 T~kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G 225 (263)
T COG1101 191 TAKIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSG 225 (263)
T ss_pred HHHHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCC
Confidence 77765 457888777 48888877776655444444
No 288
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=5.7e-19 Score=173.95 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=93.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|++++++ +.
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~ 447 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence 3689999999999999999999999999999999986532 33444 22 347888876 44
Q ss_pred HHHHHhCCCC------CCChhh----hHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGP------NGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~----~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++++..|+.. +|-... ..+.. .+.++.+|||++.. +|+++||||||+ ||+.+.+.+. +.++.+.+
T Consensus 448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~ 524 (592)
T PRK10790 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE 524 (592)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence 5566555432 110000 00111 12344899999999 999999999999 9999998888 77777654
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
+.++++|
T Consensus 525 -~~tvIiv 531 (592)
T PRK10790 525 -HTTLVVI 531 (592)
T ss_pred -CCEEEEE
Confidence 4666655
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=166.85 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=109.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCC------CCCcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF------DYPVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~------~y~~~~~i~~~i~----------~ 59 (268)
-.++|+|+||||||||++.|+|+.+|++|+|.++|.+..+ +++ +|-..-|+|||+. +
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i 427 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEI 427 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHH
Confidence 3579999999999999999999999999999999987633 223 3333458899985 5
Q ss_pred HHHHHHhCCCCC----CChhhhHhhh------hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 60 EDVMEELGLGPN----GGLIYCMEHL------EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 60 ~~~m~~~~L~~~----g~~~~~~~~~------~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
.+++++.++.+. +|+-...... .+.+++++||++.. +++++||||||+ ||..+.+.+. +.+.++.+
T Consensus 428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~ 504 (559)
T COG4988 428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAK 504 (559)
T ss_pred HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHh
Confidence 566666665421 1111111111 12244999999999 999999999999 9999998888 88888876
Q ss_pred CCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
+ .+++++ +|.... ..+.-.|.|+.+.-+....
T Consensus 505 ~-ktvl~i----tHrl~~----------------~~~~D~I~vld~G~l~~~g 536 (559)
T COG4988 505 Q-KTVLVI----THRLED----------------AADADRIVVLDNGRLVEQG 536 (559)
T ss_pred C-CeEEEE----EcChHH----------------HhcCCEEEEecCCceeccC
Confidence 4 666655 354331 1223467788777776544
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=6.5e-19 Score=171.57 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=89.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC---cCCCC--CCCcccChhhhhh-----------HHHHHHHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEEL 66 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~---~~~~~--~y~~~~~i~~~i~-----------~~~~m~~~ 66 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|... ..+.. .+++..++++++. +.++++.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL 425 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence 47899999999999999999999999999999876321 11111 1233456666542 45677778
Q ss_pred CCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 67 GLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++.... .+..+..+| ++||++++. +|+++|+||||+ ||+.++..+. ++++.+ +.++|++
T Consensus 426 ~l~~~~-----~~~~~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v 491 (530)
T PRK15064 426 LFSQDD-----IKKSVKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV 491 (530)
T ss_pred CCChhH-----hcCcccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE
Confidence 874210 233333333 999999999 999999999999 9999998877 777665 3466555
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.6e-18 Score=146.07 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=84.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC--CCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~--~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
.+++|+||||||||||++++.+ ++|++.+.+..+... .+.|.+ + .++++.+++++.. ++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~-----q----~~~l~~~~L~~~~-----~~~ 83 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFID-----Q----LQFLIDVGLGYLT-----LGQ 83 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEh-----H----HHHHHHcCCCccc-----cCC
Confidence 4689999999999999999853 689999877643221 122211 1 5788999987531 122
Q ss_pred hhh------hHHHHHHHHHhcCCC--CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 81 LED------NLDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 81 ~~~------~ls~~la~al~~~~~--p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
... ..+++||++++. + |+++|+|||++ +|+..+..+. +.++++++.|.+++++
T Consensus 84 ~~~~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIiv 145 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 222 233899999999 9 99999999999 9999998888 8888887667887666
No 292
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=158.98 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=87.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCcC---------CCCCC-Cc-----ccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~~---------~~~~y-~~-----~~~i~~~i~~--- 59 (268)
-+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| ++ ..++++++..
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 151 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR 151 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence 4689999999999999999999986 689999999876431 12333 21 1356665542
Q ss_pred --------------------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCC
Q 024360 60 --------------------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCP 107 (268)
Q Consensus 60 --------------------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP 107 (268)
.++++.+++.+.- ...++..+.+ +++.||++|+. +|+++|+|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEP 227 (305)
T PRK14264 152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEP 227 (305)
T ss_pred hcccccccccccccccCchHHHHHHHHHHHHHcCCchhh--hHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCC
Confidence 2223334442100 0001222222 23899999999 9999999999
Q ss_pred Cc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 108 ~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++ ||+.++..+. ++++.+++ +.+++++
T Consensus 228 tsgLD~~~~~~l~-~~L~~~~~-~~tiiiv 255 (305)
T PRK14264 228 ASALDPIATSKIE-DLIEELAE-EYTVVVV 255 (305)
T ss_pred cccCCHHHHHHHH-HHHHHHhc-CCEEEEE
Confidence 99 9999998888 88888866 4566544
No 293
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.5e-18 Score=159.66 Aligned_cols=128 Identities=16% Similarity=0.300 Sum_probs=90.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-----CCCceEEEeccCCc---------CCCCCC------CcccChhhhhhH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY------PVAMDIRELISL--- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-----~~~G~v~i~~~d~~---------~~~~~y------~~~~~i~~~i~~--- 59 (268)
.+++|+||||||||||+++|+|+.+ |++|+|.++|.+.. +..+.| ....++++++..
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~ 188 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR 188 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence 4689999999999999999999986 57999999998753 122333 113577777651
Q ss_pred --------------HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 60 --------------EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 60 --------------~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
.++++.+++.+. +....+....+ +++.||||++. +|+++|+|||++ ||+.+...+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~L~~~--l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i 264 (329)
T PRK14257 189 NNGINDRKILEKIVEKSLKSAALWDE--VKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKI 264 (329)
T ss_pred hcCCChHHHHHHHHHHHHHHcCCcch--hhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHH
Confidence 223455555321 00011222222 23899999999 999999999999 999999886
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. +.++.+.+ +.+++++
T Consensus 265 ~-~~i~~l~~-~~Tii~i 280 (329)
T PRK14257 265 E-ELILELKK-KYSIIIV 280 (329)
T ss_pred H-HHHHHHhc-CCEEEEE
Confidence 6 88888865 5777655
No 294
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=1.2e-18 Score=156.69 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=90.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
-+++|+||||||||||+++|+|+++ .+|+|+++|.+... ..+.| ++ ..++++++. +.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~ 109 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence 4689999999999999999999998 78999999977532 12333 22 126666663 44
Q ss_pred HHHHHhCCCCCCChhhhHhhhhh-----------------hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 61 DVMEELGLGPNGGLIYCMEHLED-----------------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 61 ~~m~~~~L~~~g~~~~~~~~~~~-----------------~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++.+|+.+. .+.++. .+++.|||+++. +|+++|+|||++ ||+.++..+. +.
T Consensus 110 ~~l~~~gL~~~------~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~ 180 (275)
T cd03289 110 KVAEEVGLKSV------IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KT 180 (275)
T ss_pred HHHHHcCCHHH------HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HH
Confidence 56667777532 122111 123899999999 999999999999 9999998777 77
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++.+. .+.++++|
T Consensus 181 l~~~~-~~~tii~i 193 (275)
T cd03289 181 LKQAF-ADCTVILS 193 (275)
T ss_pred HHHhc-CCCEEEEE
Confidence 77764 46777665
No 295
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=1.2e-18 Score=171.38 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=90.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||+|||||||++.|+|++ |++|+|.++|.|... +.+.| +| +-||+||+. +
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei 455 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL 455 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence 358999999999999999999999 999999999987632 23444 22 457888876 3
Q ss_pred HHHHHHhCCC------CCCChhhh----Hhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYC----MEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~----~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++. |+|-.-.. ... ..+.++.+||||+.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~ 532 (588)
T PRK11174 456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS 532 (588)
T ss_pred HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 3344443332 11100000 011 112344999999999 999999999999 9999998888 6777764
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.|+++|
T Consensus 533 ~-~~TvIiI 540 (588)
T PRK11174 533 R-RQTTLMV 540 (588)
T ss_pred C-CCEEEEE
Confidence 4 5676655
No 296
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.77 E-value=1.5e-18 Score=168.78 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=93.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC------CcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y------~~~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-|+++++. +
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 428 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI 428 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999987532 22333 22457888876 3
Q ss_pred HHHHHHhCCCC------CCChhhhH----hhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIYCM----EHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~~~----~~~--~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++.+ +|-. ... ..+ .+.++.+|||++.+ +|+++||||||+ +|+.+.+.+. +.++.+
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gld-t~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~ 504 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLD-TLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRAL 504 (529)
T ss_pred HHHHHHcCcHHHHHhCccccc-chhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHh
Confidence 45555555532 1100 000 111 12244999999999 999999999999 9999999888 767776
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
. .+.|+++|
T Consensus 505 ~-~~~t~i~i 513 (529)
T TIGR02857 505 A-QGRTVLLV 513 (529)
T ss_pred c-CCCEEEEE
Confidence 4 46676655
No 297
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.77 E-value=1.2e-19 Score=182.40 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=90.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
-.++|+||||||||||+++|+|+++|++|+|.++|.|.. ++.+.| +| +-|++|++. +
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i 585 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHH
Confidence 358999999999999999999999999999999998763 233444 22 447888875 3
Q ss_pred HHHHHHhCCCC------CCChhh----hHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~----~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++.+ .|-... ..+.. .+.++.+|||++.+ +|+++||||||+ ||..+.+.+. +.+++
T Consensus 586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~-- 660 (710)
T TIGR03796 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR-- 660 (710)
T ss_pred HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh--
Confidence 44455544432 110000 00111 12244999999999 999999999999 9999998877 44443
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
.+.|+|+|
T Consensus 661 -~~~T~Iii 668 (710)
T TIGR03796 661 -RGCTCIIV 668 (710)
T ss_pred -cCCEEEEE
Confidence 46777655
No 298
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=1.8e-18 Score=153.69 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=85.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
.+++|+||||||||||+++|+|+++|.+|+|.+.|.+... ..+.| ++ ..++++++. +.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~ 127 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW 127 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence 4789999999999999999999999999999999876421 12222 11 124444332 22
Q ss_pred HHHHHhCCCCCC-----ChhhhH-----hhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGPNG-----GLIYCM-----EHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~~g-----~~~~~~-----~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++++..++...- ++...+ .... +.++++||++++. +|+++|+|||++ ||+.++..+. ++++.+.+
T Consensus 128 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~ 204 (257)
T cd03288 128 EALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTAFA 204 (257)
T ss_pred HHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHhcC
Confidence 233333332100 000000 1111 2233899999999 999999999999 9999987777 87877743
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
+.+++++
T Consensus 205 -~~tiii~ 211 (257)
T cd03288 205 -DRTVVTI 211 (257)
T ss_pred -CCEEEEE
Confidence 6676544
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.77 E-value=1.4e-18 Score=141.57 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=74.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|. ..+.|.+. ++ .-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~-----------------lS----------~G- 74 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ-----------------LS----------GG- 74 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-----------------CC----------HH-
Confidence 478999999999999999999999999999999873 22333211 11 11
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+..+++||++++. +|+++|+|||++ +|+.++..+. ++++++ +.+++++
T Consensus 75 ~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~ 123 (144)
T cd03221 75 EKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV 123 (144)
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence 1233899999999 999999999999 9999998877 777765 3455544
No 300
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=141.85 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=97.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC------cC-------CCC-------CCCcccChhhhhh-----
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA-------ENF-------DYPVAMDIRELIS----- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~------~~-------~~~-------~y~~~~~i~~~i~----- 58 (268)
.++++||+|+|||||++.+.=+-.|.+|+..|-|... ++ +++ ..+|.++|-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 4689999999999999999999999999999876432 11 112 1255666666542
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhh-hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLED-NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~-~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++++.|.+.. ..+.+....+ +++++|||+|+. +|++++|||||+ |||....++. ++++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~a-dr~plhlsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~iik 185 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYA-DRYPLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SIIK 185 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccc-ccCceecccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHHH
Confidence 56778888887762 1222222222 234999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
.|+..|++-++|
T Consensus 186 el~~tgitqviv 197 (242)
T COG4161 186 ELAETGITQVIV 197 (242)
T ss_pred HHHhcCceEEEE
Confidence 999888885544
No 301
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.8e-19 Score=159.99 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=111.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-C----CCceEEEeccCCcC-----------CCCCC---------CcccChhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~----~~G~v~i~~~d~~~-----------~~~~y---------~~~~~i~~~i 57 (268)
.++||+|.+||||||++++++|+++ + .+|+|.+.|.|... ..+++ .|-++|.+++
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 5789999999999999999999997 3 57899999986521 12222 2334444332
Q ss_pred h------------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCH
Q 024360 58 S------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (268)
Q Consensus 58 ~------------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~ 112 (268)
. +.++++.+|+.+.. ..++.++.++| +.||.+++. +|++||.||||. ||.
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~---~~~~~YPhelSGGMrQRV~IAmala~--~P~LlIADEPTTALDv 186 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPE---RRLKSYPHELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDV 186 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH---HHHhhCCcccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhH
Confidence 2 45677788887542 12466666655 899999999 999999999999 999
Q ss_pred HhHHHHHHHHHHHHHh-CCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 113 FTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 113 ~~~~~i~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
..+.+++ ++++++++ .|.++++| +|.+.=...+++ .|.|+....+++..
T Consensus 187 t~QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~aD---------------ri~VMYaG~iVE~g 236 (316)
T COG0444 187 TVQAQIL-DLLKELQREKGTALILI----THDLGVVAEIAD---------------RVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhcc---------------eEEEEECcEEEEeC
Confidence 9999999 99999986 58888777 355443333332 55677666666544
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=2e-18 Score=171.84 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=96.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|++.++|.++.. +.+.| .+..++.+++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999976531 22333 23456665543
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+. .+..+.++ +++||++++. +|+++|+|||++ ||+.+++.+. +
T Consensus 115 ~~~~~~~~~~~~~~l~~lgl~~~------~~~~~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ 185 (648)
T PRK10535 115 GLERKQRLLRAQELLQRLGLEDR------VEYQPSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-A 185 (648)
T ss_pred CCCHHHHHHHHHHHHHHCCChhh------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-H
Confidence 3556677777653 23333333 2899999999 999999999999 9999998888 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
+++++++++.+++++
T Consensus 186 ll~~l~~~g~tiliv 200 (648)
T PRK10535 186 ILHQLRDRGHTVIIV 200 (648)
T ss_pred HHHHHHhcCCEEEEE
Confidence 899887667777655
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.77 E-value=2.2e-18 Score=168.86 Aligned_cols=121 Identities=20% Similarity=0.131 Sum_probs=83.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-C--cCCCCCCCcccChhhhhhH--------------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL-------------------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~--~~~~~~y~~~~~i~~~i~~-------------------- 59 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . ..+...+.+.+++++++..
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999886421 1 1112222334566666532
Q ss_pred --------------------------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCE
Q 024360 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDY 101 (268)
Q Consensus 60 --------------------------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~ 101 (268)
.++++.+|+.. .+..+..+ ++.||++++. +|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~~LSgGqkqrv~la~al~~--~p~v 184 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-------WDAKVTKLSGGERRRVALCRLLLE--KPDM 184 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-------ccCchhhcCHHHHHHHHHHHHHhC--CCCE
Confidence 12233344421 12222222 3999999999 9999
Q ss_pred EEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 102 LVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 102 lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+||||||+ ||+.++..+. ++++.+. .++|++
T Consensus 185 lLLDEPt~~LD~~~~~~l~-~~L~~~~---~tviii 216 (556)
T PRK11819 185 LLLDEPTNHLDAESVAWLE-QFLHDYP---GTVVAV 216 (556)
T ss_pred EEEcCCCCcCChHHHHHHH-HHHHhCC---CeEEEE
Confidence 99999999 9999998777 7777652 355544
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.77 E-value=2.3e-18 Score=168.54 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=87.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC----cCCCC-CCCcccChhhhhh--------------HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~----~~~~~-~y~~~~~i~~~i~--------------~~~~m 63 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++++++. ..+++
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 427 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence 47899999999999999999999999999998832 21 01111 1234456666543 23567
Q ss_pred HHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+++.... .+..+..+ +++||++++. +|+++|+||||+ ||+.++..+. ++++.+. + +++++
T Consensus 428 ~~~~l~~~~-----~~~~~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv 496 (552)
T TIGR03719 428 GRFNFKGSD-----QQKKVGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI 496 (552)
T ss_pred HhCCCChhH-----hcCchhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE
Confidence 777774311 12333333 3999999999 999999999999 9999998888 7777762 3 55544
No 305
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=2.2e-18 Score=171.21 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=85.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC----cCCCC-CCCcccChhhhhh--------------HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~----~~~~~-~y~~~~~i~~~i~--------------~~~~m 63 (268)
-+++|+||||||||||+++|+|.++|++|+|.+ |.+. ..+.. .+.+..++.+++. +.+++
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 424 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL 424 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence 368999999999999999999999999999988 5332 11111 2334456666553 23455
Q ss_pred HHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+++.+.. .+..+..+| ++||++++. +|++|||||||+ ||+.++..+. ++++.+ +.++|+|
T Consensus 425 ~~~~l~~~~-----~~~~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v 493 (635)
T PRK11147 425 QDFLFHPKR-----AMTPVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLV 493 (635)
T ss_pred HhcCCCHHH-----HhChhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEE
Confidence 666664211 233333333 899999999 999999999999 9999987666 666665 3466555
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.2e-18 Score=142.01 Aligned_cols=126 Identities=15% Similarity=0.160 Sum_probs=97.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC---Cc---ccChhhhhh------------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------ 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y---~~---~~~i~~~i~------------ 58 (268)
.++|+||+|||||||+|+++.++.|++|.+++.|.+... +.++| .| .-+|+|++-
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr 110 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR 110 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence 578999999999999999999999999999999988632 22333 11 125555543
Q ss_pred --HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-h
Q 024360 59 --LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-S 128 (268)
Q Consensus 59 --~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~ 128 (268)
+.+.++.++++..- +.+...++| .+|+|.|.. -|++++|||||+ ||+.+.+.+- +++.++- .
T Consensus 111 ~aa~~llar~~l~~~~-----L~k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~ 182 (223)
T COG4619 111 AAALDLLARFALPDSI-----LTKNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVRE 182 (223)
T ss_pred HHHHHHHHHcCCchhh-----hcchhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhh
Confidence 67889999998753 344444443 899999999 999999999999 9999999987 7777665 5
Q ss_pred CCCeEEEEE
Q 024360 129 RNFNVCAVY 137 (268)
Q Consensus 129 ~~~~ii~v~ 137 (268)
++..++.|.
T Consensus 183 q~vAv~WiT 191 (223)
T COG4619 183 QNVAVLWIT 191 (223)
T ss_pred hceEEEEEe
Confidence 577777663
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=3.1e-18 Score=167.67 Aligned_cols=121 Identities=19% Similarity=0.108 Sum_probs=82.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-C--cCCCCCCCcccChhhhhhH--------------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL-------------------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~--~~~~~~y~~~~~i~~~i~~-------------------- 59 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . ..+.....+.+++++++..
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999886421 1 1112222345577766542
Q ss_pred --------------------------------HHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCE
Q 024360 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDY 101 (268)
Q Consensus 60 --------------------------------~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~ 101 (268)
.++++.+++.. .+..+.++ +++||++++. +|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~LSgGqkqrv~la~al~~--~p~l 182 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-------WDADVTKLSGGERRRVALCRLLLS--KPDM 182 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-------ccCchhhcCHHHHHHHHHHHHHhc--CCCE
Confidence 11222333321 12222233 3999999999 9999
Q ss_pred EEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 102 LVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 102 lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+||||||+ ||+.++..+. ++++.+ +.++|+|
T Consensus 183 LLLDEPt~~LD~~~~~~l~-~~L~~~---~~tvIii 214 (552)
T TIGR03719 183 LLLDEPTNHLDAESVAWLE-QHLQEY---PGTVVAV 214 (552)
T ss_pred EEEcCCCCCCChHHHHHHH-HHHHhC---CCeEEEE
Confidence 99999999 9999998777 776655 2355544
No 308
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2.3e-18 Score=171.16 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=86.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec-cCCc--CCC--CCCCcccChhhhh----------hHHHHHHHhC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AEN--FDYPVAMDIRELI----------SLEDVMEELG 67 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~-~d~~--~~~--~~y~~~~~i~~~i----------~~~~~m~~~~ 67 (268)
-+++|+||||||||||+++|+|.++|++|+|.+.+ ...+ .+. ....+..++.+.+ .+.++++.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 47899999999999999999999999999998852 1110 011 0112222333332 1567788888
Q ss_pred CCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 68 LGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 68 L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+.. .+..+..+| ++||++++. +|++|||||||+ ||+.++..+. ++++.+ .+ ++|+|
T Consensus 419 l~~~~-----~~~~~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~v 483 (638)
T PRK10636 419 FQGDK-----VTEETRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVV 483 (638)
T ss_pred CChhH-----hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEE
Confidence 85321 233333333 999999999 999999999999 9999998887 777776 24 66555
No 309
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.76 E-value=3e-18 Score=154.58 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=83.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhh---------HHHHHHHhCCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGPNG 72 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~~g 72 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.|.- ...+...+.+ .++++++. +.+.++.+++.+..
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l 142 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence 4689999999999999999999999999999987620 0111111122 25666543 12333444442110
Q ss_pred C-----hhhhH-----hhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 73 G-----LIYCM-----EHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 73 ~-----~~~~~-----~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. ....+ +... +..++.||++++. +|+++|+|||++ ||+.++..+...+++.+++ +.+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~~tIiii 215 (282)
T cd03291 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-NKTRILV 215 (282)
T ss_pred HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-CCEEEEE
Confidence 0 00000 1111 1233899999999 999999999999 9999998887445566643 5666555
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=2.4e-18 Score=168.58 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=92.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC----cCCCC-CCCcccChhhhhh--------------HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~----~~~~~-~y~~~~~i~~~i~--------------~~~~m 63 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++++++. ...++
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 47899999999999999999999999999999832 21 11121 2334456766653 23567
Q ss_pred HHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+++.+.. .+..+..+ +++||++++. +|+++|+||||+ ||+.++..+. ++++.+. + +++++
T Consensus 430 ~~~~l~~~~-----~~~~~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v 498 (556)
T PRK11819 430 GRFNFKGGD-----QQKKVGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI 498 (556)
T ss_pred HhCCCChhH-----hcCchhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE
Confidence 778875311 12233333 2899999999 999999999999 9999998888 7777762 3 55444
Q ss_pred EecccccccCHHHH
Q 024360 137 YLLDSQFITDVTKF 150 (268)
Q Consensus 137 ~l~d~~~~~d~~~~ 150 (268)
+|.......+
T Consensus 499 ----tHd~~~~~~~ 508 (556)
T PRK11819 499 ----SHDRWFLDRI 508 (556)
T ss_pred ----ECCHHHHHHh
Confidence 4554433333
No 311
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=4.9e-18 Score=165.89 Aligned_cols=130 Identities=23% Similarity=0.289 Sum_probs=89.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
-.++|+||||||||||+++++|+++|++|+|.++|.+... +.+.| ++ .-++++++.
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 424 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999976532 22333 11 236777764
Q ss_pred --------HHHHHHHh--CCCCCCChhhhHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 --------LEDVMEEL--GLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 --------~~~~m~~~--~L~~~g~~~~~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.+.++.+ |+...-+.. ..+.. .+.++++|||++.. +|+++||||||+ ||..+...+. +.++.+
T Consensus 425 ~~~~~~~~~~~~i~~l~~gl~t~~~~~-g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~ 500 (544)
T TIGR01842 425 IEAAKLAGVHELILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKAL 500 (544)
T ss_pred HHHHHHhChHHHHHhCccccccccCCC-cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHHH
Confidence 12233333 221110000 00111 12244999999999 999999999999 9999998888 777777
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
...+.+++++
T Consensus 501 ~~~~~tvi~i 510 (544)
T TIGR01842 501 KARGITVVVI 510 (544)
T ss_pred hhCCCEEEEE
Confidence 5456777655
No 312
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=3.1e-18 Score=168.66 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
-.++|+|+||||||||+++|+|+++|++|.|.++|.+... +.+.| ++ +-|+++++. +
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i 441 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM 441 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987532 33444 22 347888876 2
Q ss_pred HHHHHHhCCC------CCCChhhh----Hhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYC----MEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~----~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++. |.|-.... .+.. .+.++.+|||++.+ +|+++||||||+ ||+.+...+. +.++.+.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 3344444432 11100000 0111 12344999999999 999999999999 9999998888 6666664
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.++++|
T Consensus 519 ~-~~tvIii 526 (588)
T PRK13657 519 K-GRTTFII 526 (588)
T ss_pred c-CCEEEEE
Confidence 3 5676655
No 313
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=2.5e-18 Score=168.51 Aligned_cols=130 Identities=18% Similarity=0.109 Sum_probs=92.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-C-----cccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-P-----VAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~-----~~~~i~~~i~----------- 58 (268)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+.. .+.+.| + .+-|++++++
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 368999999999999999999999999999999997642 123444 2 2457787765
Q ss_pred HHHHHHHhCCCC------CCCh--hh--hHh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGP------NGGL--IY--CME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ~~~~m~~~~L~~------~g~~--~~--~~~-~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++..++.+ +|-. +. ... ...+.++.+|||++.. +|+++||||||+ ||..+.+.++ +.++.+
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~ 515 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL 515 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence 334555555431 1100 00 001 1112244999999999 999999999999 9999998888 767776
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ +.++|+|
T Consensus 516 ~~-~~tiIii 524 (571)
T TIGR02203 516 MQ-GRTTLVI 524 (571)
T ss_pred hC-CCEEEEE
Confidence 44 5676655
No 314
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.9e-18 Score=140.43 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=79.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++|+||||||||||+++|+|.+++.+|+|.+.|.+..... ..++....++-+. +..-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q------lS~G- 84 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ------LSGG- 84 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee------CCHH-
Confidence 478999999999999999999999999999999987543210 0001111111000 0111
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+..++.|+++++. +|+++++|||++ +|..++..+. ++++++.+.+.+++++
T Consensus 85 ~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~ 136 (157)
T cd00267 85 QRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV 136 (157)
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 1233889999999 999999999999 9999998877 8888876656666554
No 315
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.76 E-value=1.8e-18 Score=171.36 Aligned_cols=131 Identities=20% Similarity=0.268 Sum_probs=98.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccCCcC----CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d~~~----~~~~y-------~~~~~i~~~i~---------- 58 (268)
-+++|+||||||||||+++|+|..++. +|+|.++|.+... +.+.| .+.+||+|++.
T Consensus 52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (617)
T TIGR00955 52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131 (617)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence 468999999999999999999998874 7999999986421 22333 34678888764
Q ss_pred ---------HHHHHHHhCCCCCCChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++++.+|+.+.......- ..+. ++.++.||++|.. +|+++++||||+ ||..+...++ +.
T Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~ 208 (617)
T TIGR00955 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV 208 (617)
T ss_pred CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence 56788888886532111000 0011 1233999999999 999999999999 9999999999 88
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++++++.|.+++++
T Consensus 209 L~~l~~~g~tvi~~ 222 (617)
T TIGR00955 209 LKGLAQKGKTIICT 222 (617)
T ss_pred HHHHHhCCCEEEEE
Confidence 88887767777655
No 316
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=146.00 Aligned_cols=149 Identities=18% Similarity=0.358 Sum_probs=107.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec-cCCcC--------CCC-------CCCcccChhhhhh---------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA--------ENF-------DYPVAMDIRELIS--------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~-~d~~~--------~~~-------~y~~~~~i~~~i~--------- 58 (268)
.-+|||||||||||++.+|+|..+|+.|+|++.| .|... ..+ ..+.+++|++++.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 3579999999999999999999999999999998 55422 111 1245678888765
Q ss_pred ---------------HHHHHHHhCCCCCCChhhhHhhhhhhHH----HH--HHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLD----DW--LAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 59 ---------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls----~~--la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
++++++..||++.. +.....+| .| |...+++ +|+++++|||.+ +--....
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~------~~~A~~LSHGqKQwLEIGMll~Q--~P~lLLlDEPvAGMTd~Et~ 184 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDER------DRLAALLSHGQKQWLEIGMLLAQ--DPKLLLLDEPVAGMTDAETE 184 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhh------hhhhhhhccchhhhhhhheeecc--CCcEEEecCccCCCcHHHHH
Confidence 78899999999873 44444444 55 4555566 999999999999 7666666
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 117 ~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
... ++++.++. ++++++| -+|..|..... -+++|+...-.+...
T Consensus 185 ~ta-eLl~~la~-~hsilVV-EHDM~Fvr~~A------------------~~VTVlh~G~VL~EG 228 (249)
T COG4674 185 KTA-ELLKSLAG-KHSILVV-EHDMGFVREIA------------------DKVTVLHEGSVLAEG 228 (249)
T ss_pred HHH-HHHHHHhc-CceEEEE-eccHHHHHHhh------------------heeEEEeccceeecc
Confidence 777 99999965 4666555 46666543221 266788777666544
No 317
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.76 E-value=3.3e-18 Score=165.57 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=85.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc-CC--cCCCCCCCcccChhhhhh----------------------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS---------------------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~-d~--~~~~~~y~~~~~i~~~i~---------------------- 58 (268)
.+||||+||||||||+|+|+|...|++|+|...+- .. ..+..+.....++.+.+.
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 58999999999999999999999999999987642 11 112222222334444332
Q ss_pred ------------------------HHHHHHHhCCCCCCChhhhHhhhhhh--HHHHHHHHHhcCCCCCEEEEeCCCc-CC
Q 024360 59 ------------------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (268)
Q Consensus 59 ------------------------~~~~m~~~~L~~~g~~~~~~~~~~~~--ls~~la~al~~~~~p~~lilDEP~~-LD 111 (268)
+..++..+|+.+.. ..+..+.+. .+++||++|.. +|++|||||||+ ||
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~---~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHLD 185 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED---RPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHLD 185 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc---CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcccC
Confidence 22333334444321 112333322 23999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccC
Q 024360 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 146 (268)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d 146 (268)
..+... +.+.+... .| ++|+|. ||-+|+..
T Consensus 186 ~~~i~W-Le~~L~~~--~g-tviiVS-HDR~FLd~ 215 (530)
T COG0488 186 LESIEW-LEDYLKRY--PG-TVIVVS-HDRYFLDN 215 (530)
T ss_pred HHHHHH-HHHHHHhC--CC-cEEEEe-CCHHHHHH
Confidence 998744 33555433 35 666663 67666553
No 318
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.76 E-value=2.7e-18 Score=172.21 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=91.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|++|++. +
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i 571 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI 571 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHH
Confidence 3589999999999999999999999999999999987532 33444 22 347888876 3
Q ss_pred HHHHHHhCCCC------CCChhh----hHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~----~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++.+ .|-... ..+.. .+.++.+|||++.. +|+++||||||+ ||+.+.+.+. +.++++.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~ 648 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWL 648 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHh
Confidence 34444444321 110000 00111 12344999999999 999999999999 9999998888 6677765
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.|+++|
T Consensus 649 ~-~~T~iiI 656 (694)
T TIGR03375 649 A-GKTLVLV 656 (694)
T ss_pred C-CCEEEEE
Confidence 4 5666655
No 319
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=3.6e-18 Score=167.92 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=94.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-++++++. +
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 446 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence 3689999999999999999999999999999999987532 23333 22 347888875 4
Q ss_pred HHHHHHhCCCC-----CCChhhhH----hhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP-----NGGLIYCM----EHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~-----~g~~~~~~----~~~--~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++.+ .|-. ... ..+ .+.++.+|||++.. +|+++|+||||+ +|..+...+. +.++++.
T Consensus 447 ~~al~~~~l~~~i~~p~Gld-T~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~ 522 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA 522 (574)
T ss_pred HHHHHHcCCHHHHcCccccC-chhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 56667766653 2200 000 111 12234999999999 999999999999 9999998888 7777764
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.+++++
T Consensus 523 ~-~~tviii 530 (574)
T PRK11160 523 Q-NKTVLMI 530 (574)
T ss_pred C-CCEEEEE
Confidence 3 6676655
No 320
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=2.1e-18 Score=176.73 Aligned_cols=147 Identities=17% Similarity=0.259 Sum_probs=118.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-Cc------ccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-~~------~~~i~~~i~--------- 58 (268)
.|.|+.|||||||||++++++|..+|++|++.+.|.+... +.++| || .+|.||++.
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP 671 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999988743 34777 33 567777764
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
++..++.++|.+.+ +...+.+| ..+|.+++. +|+++++|||++ +||.+++.++ ++++
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~------~~~~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~ 742 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYA------NKQVRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIA 742 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhh------ccchhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHH
Confidence 57778888998763 44343333 677778888 999999999999 9999998887 9999
Q ss_pred HHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHH
Q 024360 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (268)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (268)
+++++|..++ +.+|.+.+.+..|+++.....+++
T Consensus 743 ~~~k~g~aii----LTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 743 RLRKNGKAII----LTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred HHHhcCCEEE----EEcCCHHHHHHHhhhhheeecCee
Confidence 9988765553 568999999999988866555544
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.76 E-value=7.5e-19 Score=161.55 Aligned_cols=155 Identities=20% Similarity=0.275 Sum_probs=114.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------C------CCCC---CcccChhhhhh------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------E------NFDY---PVAMDIRELIS------ 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~------~~~y---~~~~~i~~~i~------ 58 (268)
.+||+|.+|||||||-.+|.+++++. |.|.+.|.+... . .-+| .|.++|.+.+.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 57999999999999999999999887 999999987632 1 1133 56677777665
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++|+++||.|+....|..++..++ ++.+|||++.. +|+++++||||+ ||...+.+++ ++++
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LLr 470 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLLR 470 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHHH
Confidence 78899999999986444443333322 33899999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 125 HLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
.|+++ |.+-+++ ||.+.=...+| -.+-|+.....++..
T Consensus 471 ~LQ~k~~LsYLFI----SHDL~VvrAl~---------------~~viVm~~GkiVE~G 509 (534)
T COG4172 471 DLQQKHGLSYLFI----SHDLAVVRALC---------------HRVIVMRDGKIVEQG 509 (534)
T ss_pred HHHHHhCCeEEEE----eccHHHHHHhh---------------ceEEEEeCCEEeeeC
Confidence 99854 6554443 46544222222 245577766666655
No 322
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.75 E-value=9.6e-19 Score=167.59 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=100.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC----CceEEEeccCCcC-----------CCCC---------CCcccChhhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENFD---------YPVAMDIRELIS 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~----~G~v~i~~~d~~~-----------~~~~---------y~~~~~i~~~i~ 58 (268)
.++||+|.+||||||+.+++.|++++. +|+|.+.|.|... ..+. +.|.++|.+.+.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 578999999999999999999999887 8999999976411 1122 234466666554
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
+.++++.+||.+.... +.++.++| +.||+||+. +|++||+||||. ||+.+
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~ 189 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTT 189 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHH
Confidence 6788899999876321 23555544 899999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEE
Q 024360 115 HVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 115 ~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
+.+++ ++++.+++ .|.++++|
T Consensus 190 q~qIL-~llk~l~~e~g~a~l~I 211 (539)
T COG1123 190 QAQIL-DLLKDLQRELGMAVLFI 211 (539)
T ss_pred HHHHH-HHHHHHHHHcCcEEEEE
Confidence 99999 99999984 58888766
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.75 E-value=5.5e-18 Score=165.97 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=93.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhh-------hHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELI-------SLEDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i-------~~~~~ 62 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ +-+++++. .+.++
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 448 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence 4689999999999999999999999999999999987632 22333 22 12344432 14567
Q ss_pred HHHhCCCCCC-----ChhhhHhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 63 MEELGLGPNG-----GLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 63 m~~~~L~~~g-----~~~~~~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
++.+++.+.- |.-. ...+. +.++.+|||++.. +|+++||||||+ ||+.+.+.+.+.+++.++..+.|++
T Consensus 449 ~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tii 525 (555)
T TIGR01194 449 LQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTII 525 (555)
T ss_pred HHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 7888876431 0000 01121 2344899999999 999999999999 9999998888556666655577776
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
++
T Consensus 526 ii 527 (555)
T TIGR01194 526 II 527 (555)
T ss_pred EE
Confidence 66
No 324
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=6.6e-18 Score=165.87 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=91.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ .-|+++++. +
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999986522 22333 11 347888775 3
Q ss_pred HHHHHHhCCC------CCCChhhhH----hhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYCM----EHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~~----~~~--~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++. |.|-. ..+ ..+ .+.++.+|||++.. +|+++||||||+ ||+.+...+. +.++.+
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~-t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~ 497 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYD-TEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQW 497 (569)
T ss_pred HHHHHHcCCHHHHHhCcCccc-ceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 3444444442 11100 000 011 12234899999999 999999999999 9999998888 777776
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
. .+.|++++
T Consensus 498 ~-~~~tii~i 506 (569)
T PRK10789 498 G-EGRTVIIS 506 (569)
T ss_pred h-CCCEEEEE
Confidence 4 46777655
No 325
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=1.1e-17 Score=165.18 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=101.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC---CCceEEEeccCCcC-----------CCCCCCcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~---~~G~v~i~~~d~~~-----------~~~~y~~~~~i~~~i~---------- 58 (268)
.+.||+||+|||||||+++++|-... .+|+|.++|..... +.-.+.+.+||+|++.
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 47899999999999999999999864 79999999954321 1222356789999876
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhh-----------hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLED-----------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~-----------~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
++++++++||..- .+...+ ..++.+|..+.. +|.++++||||+ ||..+...
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~------~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~ 208 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKC------ADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQ 208 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhh------ccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHH
Confidence 7889999998732 334332 233999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
++ +++++++++|.+||++
T Consensus 209 vv-~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 209 VV-QLLKRLARSGRTVICT 226 (613)
T ss_pred HH-HHHHHHHhCCCEEEEE
Confidence 99 9999999888887654
No 326
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=5.7e-18 Score=166.19 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=91.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
-.++|+||||||||||+++|+|+++|.+|+|.++|.+... +.+.| ++ +-|+++++. +
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 446 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV 446 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHH
Confidence 3589999999999999999999999999999999976432 23444 22 447888776 3
Q ss_pred HHHHHHhCCC------CCCChhhhH----hhh--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYCM----EHL--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~~----~~~--~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++. |.| +-... ..+ .+.++.+|||++.. +|+++|+||||+ +|..+.+.+. +.++.+
T Consensus 447 ~~~l~~~~l~~~i~~l~~g-l~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~ 522 (576)
T TIGR02204 447 EAAARAAHAHEFISALPEG-YDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETL 522 (576)
T ss_pred HHHHHHcCcHHHHHhCCCC-CCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHH
Confidence 3444444442 111 00000 111 12344999999999 999999999999 9999998877 777776
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ +.++|+|
T Consensus 523 ~~-~~t~Iii 531 (576)
T TIGR02204 523 MK-GRTTLII 531 (576)
T ss_pred hC-CCEEEEE
Confidence 44 5676655
No 327
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.75 E-value=8.5e-18 Score=164.90 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=89.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||+||||||+++.|.++++|++|+|.++|.|... +.+++ +| +-||++++. +
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 4589999999999999999999999999999999987642 33444 22 357888876 2
Q ss_pred HHHHHHhCCC------CCCChhhh----Hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYC----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~----~~-~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++. |+|-.... .. ...+.++.+|||++.. +|+++||||||+ +|..+...+. +.++.+.
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~l~ 512 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKKLL 512 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHHHh
Confidence 2222222111 21100000 01 1112344999999999 999999999999 9999998888 6676665
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.|+++|
T Consensus 513 ~-~rT~iiI 520 (567)
T COG1132 513 K-GRTTLII 520 (567)
T ss_pred c-CCEEEEE
Confidence 4 4455444
No 328
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.75 E-value=8e-18 Score=168.57 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=90.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
..++|+||||||||||+|+|+|+++|++|+|.++|.+... +.++| +| +-|++|++. +.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~ 559 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW 559 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence 3589999999999999999999999999999999987642 34444 22 347888875 34
Q ss_pred HHHHHhCCCC------CCChhh----hHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGP------NGGLIY----CMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~----~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++++..++.+ .|-... ..+. ..+.++.+||||+.. +|+++||||||+ ||+.+.+.+. +.++.+
T Consensus 560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~-- 634 (686)
T TIGR03797 560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL-- 634 (686)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence 4555555432 110000 0011 112344999999999 999999999999 9999998877 555554
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
+.|+++|
T Consensus 635 -~~T~IiI 641 (686)
T TIGR03797 635 -KVTRIVI 641 (686)
T ss_pred -CCeEEEE
Confidence 4566555
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.4e-18 Score=167.15 Aligned_cols=123 Identities=16% Similarity=0.195 Sum_probs=82.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC----cCCC-------CCC-Cc------ccCh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAEN-------FDY-PV------AMDI----------- 53 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~----~~~~-------~~y-~~------~~~i----------- 53 (268)
-+++|+||||||||||+++|+|.++|++|+|.+.|... .... +.| .+ .++.
T Consensus 28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 46899999999999999999999999999999876421 0000 011 00 0000
Q ss_pred ------hh----------hhhHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-C
Q 024360 54 ------RE----------LISLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-I 110 (268)
Q Consensus 54 ------~~----------~i~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-L 110 (268)
.. .-.+.++++.+|+.+.. .+..+..+| ++||++|+. +|++|||||||+ |
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~-----~~~~~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~L 180 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ-----LERPVSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHL 180 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh-----hcCchhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcC
Confidence 00 00145567777775211 233333333 999999999 999999999999 9
Q ss_pred CHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 111 ELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 111 D~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|+.+...+. ++++.+ +.++|+|
T Consensus 181 D~~~~~~L~-~~L~~~---~~tviiv 202 (638)
T PRK10636 181 DLDAVIWLE-KWLKSY---QGTLILI 202 (638)
T ss_pred CHHHHHHHH-HHHHhC---CCeEEEE
Confidence 999986655 666554 4566555
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.74 E-value=1.4e-17 Score=162.80 Aligned_cols=132 Identities=17% Similarity=0.087 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhh---h---hHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIREL---I---SLEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~---i---~~~~~m 63 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +-+++++ . .+.+++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 429 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL 429 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence 4689999999999999999999999999999999987532 23444 22 1234433 1 255677
Q ss_pred HHhCCCCCCChh----hhHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLI----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~----~~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.++++..-... ...+.. .+.++.+|||++.. +|+++||||||+ ||+.+...+.+.+.+.+++.+.|+++|
T Consensus 430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 777776431100 001111 12344899999999 999999999999 999999888844444444346777665
No 331
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.74 E-value=7.2e-18 Score=169.43 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=88.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| +| +-|++|++.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~ 580 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE 580 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHH
Confidence 3589999999999999999999999999999999987532 23444 22 346777765
Q ss_pred HHHHHHHhCCCC------CCCh--hh--hHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGP------NGGL--IY--CMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ~~~~m~~~~L~~------~g~~--~~--~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++..++.. .|-. +. ..+. ..+.++.+|||++.+ +|+++||||||+ ||..+...+. +.++.+
T Consensus 581 i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~ 657 (708)
T TIGR01193 581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL 657 (708)
T ss_pred HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh
Confidence 233444444321 1100 00 0011 112344999999999 999999999999 9999998888 555554
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+.|+|+|
T Consensus 658 --~~~T~Iii 665 (708)
T TIGR01193 658 --QDKTIIFV 665 (708)
T ss_pred --cCCEEEEE
Confidence 35676555
No 332
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.74 E-value=1.3e-17 Score=164.21 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=89.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~----------~ 59 (268)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + .+-++++++. +
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 441 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV 441 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999876421 22333 1 2347777775 2
Q ss_pred HHHHHHhCCCC------CCChhhhHhh----h--hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIYCMEH----L--EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~~~~~----~--~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++.. .| .-..... + .+.++.+|||++.. +|+++|+||||+ ||..+.+.+. +.++.+
T Consensus 442 ~~a~~~~~~~~~i~~l~~g-~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~ 517 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNG-YDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDAL 517 (585)
T ss_pred HHHHHHhCcHHHHHhcccc-ccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHH
Confidence 22233222211 11 0000011 1 12244899999999 999999999999 9999998888 777777
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ +.+++++
T Consensus 518 ~~-~~tvI~i 526 (585)
T TIGR01192 518 RK-NRTTFII 526 (585)
T ss_pred hC-CCEEEEE
Confidence 44 6777655
No 333
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.73 E-value=1.1e-17 Score=167.92 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=91.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +-|+++++. +
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i 563 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987532 23444 22 347787775 2
Q ss_pred HHHHHHhCCCC------CCChhh----hHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIY----CMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~----~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++.. .|-... ..+... +.++.+|||++.. +|+++||||||+ ||..+...+. +.++++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~ 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence 33344444321 110000 001111 2234999999999 999999999999 9999998888 7777774
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
.+.|++++
T Consensus 641 -~~~t~i~i 648 (694)
T TIGR01846 641 -RGRTVIII 648 (694)
T ss_pred -CCCEEEEE
Confidence 46676655
No 334
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.73 E-value=2.4e-18 Score=137.95 Aligned_cols=103 Identities=24% Similarity=0.279 Sum_probs=75.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhh---hHHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE 65 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i---~~~~~m~~ 65 (268)
-+++|+||||||||||+++|+|..+|.+|.|.++|.+... ..+.| .+..+++++. .++++++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~ 91 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK 91 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999877643 12222 2345677664 37778888
Q ss_pred hCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 66 LGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~ 109 (268)
+++....... ++..... .+++||+++.. +|+++|+||||+
T Consensus 92 l~~~~~~~~~--~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 92 LGLEDLLDRK--IGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp TTHGGGTGSB--GTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred cccccccccc--cccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 8876521111 1111122 23999999999 999999999996
No 335
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=1.5e-17 Score=177.09 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=97.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC---CCCceEEEeccCCc---CCCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPA---AENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~---~~~G~v~i~~~d~~---~~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|..+ +++|+|.++|.+.. ++.++| .+..||+|++.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999987 68899999998652 122334 23468888764
Q ss_pred --------HHHHHHHhCCCCCCChhhh---Hhhhh-hhHHHHHHHHHhcCCCCC-EEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYC---MEHLE-DNLDDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~---~~~~~-~~ls~~la~al~~~~~p~-~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
++++++.+++.+.....-. ..... +..++.||++|+. +|+ ++++||||+ ||..+...++ ++++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~ 946 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR 946 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 3567778888653211000 00111 1233899999999 997 999999999 9999999998 9999
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
+++++|.++|++
T Consensus 947 ~la~~g~tvI~t 958 (1394)
T TIGR00956 947 KLADHGQAILCT 958 (1394)
T ss_pred HHHHcCCEEEEE
Confidence 997778777655
No 336
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.2e-17 Score=158.43 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=90.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-------CCCCCC-Cc-----ccChhhhhh----------HH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------AENFDY-PV-----AMDIRELIS----------LE 60 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-------~~~~~y-~~-----~~~i~~~i~----------~~ 60 (268)
-+||+|+|||||||++|+|.+++. ++|+|+++|+|.. ++.++| || +-||..++. +.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 479999999999999999999999 9999999999873 234555 44 235555554 44
Q ss_pred HHHHHhCCCC------CC-----ChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGP------NG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~------~g-----~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++.+++++.+ .| |..-++=...++++++++|++.+ +|+++++||||+ ||..+-++++ +.+... .
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~-~ 534 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV-M 534 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh-c
Confidence 4555555532 11 00001112223355999999999 999999999999 9999999999 555553 3
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
.+.|+|+|
T Consensus 535 ~~rTvI~I 542 (591)
T KOG0057|consen 535 SGRTVIMI 542 (591)
T ss_pred CCCeEEEE
Confidence 46676655
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2e-17 Score=164.39 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=81.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC--------CcCCCCCC-Cccc----------------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM---------------------- 51 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d--------~~~~~~~y-~~~~---------------------- 51 (268)
-.++|+||||||||||+++|+|+++|++|+|.+.|.. +......+ .+.+
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE 109 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999987621 10011110 0000
Q ss_pred --Chhhh--------------------hhHHHHHHHhCCCCCCChhhhHhhhhh--hHHHHHHHHHhcCCCCCEEEEeCC
Q 024360 52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCP 107 (268)
Q Consensus 52 --~i~~~--------------------i~~~~~m~~~~L~~~g~~~~~~~~~~~--~ls~~la~al~~~~~p~~lilDEP 107 (268)
+..++ -.+.++++.+|+..+. . ...+.+ ..+++||++|+. +|++||||||
T Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~---~-~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---A-LSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCC---c-hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 0134556666664210 0 112221 223999999999 9999999999
Q ss_pred Cc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 108 ~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|+ ||+.++..+. ++++.+ +.++|+|
T Consensus 184 t~~LD~~~~~~L~-~~L~~~---~~tvliv 209 (635)
T PRK11147 184 TNHLDIETIEWLE-GFLKTF---QGSIIFI 209 (635)
T ss_pred CCccCHHHHHHHH-HHHHhC---CCEEEEE
Confidence 99 9999997766 777766 2466555
No 338
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.7e-17 Score=169.80 Aligned_cols=128 Identities=22% Similarity=0.226 Sum_probs=90.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC-------CCCC------CcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY------PVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~-------~~~y------~~~~~i~~~i~----------~ 59 (268)
..++|+||+||||||+++.|.+++.|++|+|.++|.|...- .++. ..+.||+|++. +
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 46899999999999999999999999999999999887431 2222 22567888876 1
Q ss_pred HHHH---------HHh--CC----CCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 60 EDVM---------EEL--GL----GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 60 ~~~m---------~~~--~L----~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
.++. ..+ |+ |..|.+ =.-.++++++|||+|.. +|++|||||||+ ||+.+.+.+. +.+
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~q----LSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~AL 532 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGVQ----LSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-EAL 532 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCCC----CChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-HHH
Confidence 2222 211 11 223211 01123355999999999 999999999999 9999986666 888
Q ss_pred HHHHhCCCeEEEEE
Q 024360 124 DHLKSRNFNVCAVY 137 (268)
Q Consensus 124 ~~l~~~~~~ii~v~ 137 (268)
++..+...|+++.|
T Consensus 533 d~~~~grTTivVaH 546 (1228)
T KOG0055|consen 533 DKASKGRTTIVVAH 546 (1228)
T ss_pred HHhhcCCeEEEEee
Confidence 88765444444444
No 339
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.72 E-value=1.7e-17 Score=166.89 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=88.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC------CcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y------~~~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-|+|||+. +
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i 587 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI 587 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987532 23444 22457888876 3
Q ss_pred HHHHHHhCCCC------CCChhhhH-----hh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIYCM-----EH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~~~-----~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++.+ +| .-... +. ..+.++.+|||++.+ +|+++||||||+ ||..+.+.+. + ..
T Consensus 588 ~~al~~a~l~~~i~~lp~G-ldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~~-- 660 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNG-YDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-SR-- 660 (711)
T ss_pred HHHHHHcCCHHHHHhCCCc-cCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-hh--
Confidence 34445444432 11 00000 11 122344999999999 999999999999 9999887766 4 21
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
...+.|+++|
T Consensus 661 ~~~~~TvIiI 670 (711)
T TIGR00958 661 SRASRTVLLI 670 (711)
T ss_pred ccCCCeEEEE
Confidence 2346677655
No 340
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=5.8e-17 Score=135.49 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC----------------CCCCCcccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~----------------~~~y~~~~~i~~~i~-------- 58 (268)
-.++|||.||||||||.|+++|.++|++|+|.++|....-. +..+.|.+.|-..+.
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~ 119 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence 35799999999999999999999999999999999754211 112222222222111
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
+-+-++.+||-|.-+-.+..-. ..+++++++||||.. +|+++|.||.-+ ||...+.++. ++.-.|+
T Consensus 120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeLQ 196 (267)
T COG4167 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLELQ 196 (267)
T ss_pred CChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHHH
Confidence 5667788899876543332211 223355999999999 999999999988 9999999999 8888887
Q ss_pred h-CCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 128 S-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
+ .|.+-|.|. .++ +++++-...+-|+-..+.++..
T Consensus 197 ek~GiSyiYV~----Qhl---------------G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 197 EKQGISYIYVT----QHI---------------GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHhCceEEEEe----chh---------------hHhhhhcccEEEEecCceeecC
Confidence 5 477665442 221 4555445566677777777665
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=99.72 E-value=3.8e-17 Score=174.17 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=96.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC--CCceEEEeccCCcC----CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~--~~G~v~i~~~d~~~----~~~~y-------~~~~~i~~~i~----------- 58 (268)
-+++|+||||||||||+++|+|..++ .+|+|.++|.+... +.++| .+.+||+|++.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~ 986 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence 47899999999999999999999763 68999999976531 22333 34568887753
Q ss_pred --------HHHHHHHhCCCCCCChhhh---Hhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYC---MEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~---~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
++++++.++|.+....... ...+. ++.++.||++|+. +|+++++||||+ ||..+...++ ++++
T Consensus 987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 3467888888653111100 00111 2233999999999 999999999999 9999999999 8999
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++.|.+++++
T Consensus 1064 ~l~~~g~tVI~t 1075 (1470)
T PLN03140 1064 NTVDTGRTVVCT 1075 (1470)
T ss_pred HHHHCCCEEEEE
Confidence 998778777655
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-16 Score=137.57 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=94.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCCceEEEeccCCcC--------C----CCCCC---cccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------E----NFDYP---VAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~G~v~i~~~d~~~--------~----~~~y~---~~~~i~~~i~------- 58 (268)
.+.+|+||||||||||.++|+|.- +.++|+|.++|.|... . .+.|| +.+++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 578999999999999999999985 7899999999988732 1 12222 2344444443
Q ss_pred ------------HHHHHHHhCCCCCCChhhhHhhhh-hhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 ------------LEDVMEELGLGPNGGLIYCMEHLE-DNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 ------------~~~~m~~~~L~~~g~~~~~~~~~~-~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+++.++.+++.+.- +++.. ..+ +..|++.++. +|++.|||||-+ ||..+-+.+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~-----l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V 183 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEF-----LERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIV 183 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHH-----hhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHH
Confidence 56678888887721 12222 122 2778888888 999999999999 999999777
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. +-++.++..+.+++++
T Consensus 184 ~-~~i~~lr~~~~~~liI 200 (251)
T COG0396 184 A-EGINALREEGRGVLII 200 (251)
T ss_pred H-HHHHHHhcCCCeEEEE
Confidence 7 9999998888887666
No 343
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=6.6e-17 Score=157.74 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=104.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC---Cc---ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y---~~---~~~i~~~i~----------- 58 (268)
.+++++||+||||||+.+.|..++.|++|+|.++|.|... +++++ .| .-+|+|||.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i 574 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI 574 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence 4799999999999999999999999999999999988733 22332 11 346777775
Q ss_pred --------HHHHHHHh------CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEEL------GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~------~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.+.+..+ ..|+.|.+. .-.++++.+|||||.. +|.+|||||.|+ ||..+...+- +-+
T Consensus 575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL----SGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~aL 647 (716)
T KOG0058|consen 575 EAAAKMANAHEFITNFPDGYNTVVGEKGSQL----SGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-EAL 647 (716)
T ss_pred HHHHHHhChHHHHHhCccccccccCCccccc----cchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-HHH
Confidence 23333332 223443211 2223456999999999 999999999999 9999875555 888
Q ss_pred HHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
.++.++ .|+++| +|.++... +. -+|.|+.|.-+.+..
T Consensus 648 ~~~~~~-rTVlvI----AHRLSTV~--------------~A--d~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 648 DRLMQG-RTVLVI----AHRLSTVR--------------HA--DQIVVIDKGRVVEMG 684 (716)
T ss_pred HHhhcC-CeEEEE----ehhhhHhh--------------hc--cEEEEEcCCeEEecc
Confidence 877654 676655 35543211 11 167788888776543
No 344
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-17 Score=154.20 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------HH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~~ 60 (268)
-++|+|++||||||+++.++|.+.|++|+|.++|.+++. +.+.+ .| +-|+|+|+. +.
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~ 445 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 378999999999999999999999999999999987642 12222 22 336777765 45
Q ss_pred HHHHHhCCCCCC-----ChhhhHhhhhh------hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 61 DVMEELGLGPNG-----GLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 61 ~~m~~~~L~~~g-----~~~~~~~~~~~------~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++++++||...- ++...+..-.. ..+.+|||++.+ +.+++|+||||. ||+.+.++++..+..++ +
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~ 522 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVLALLFEHA-E 522 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHHHHHHHHh-c
Confidence 666666664320 00001111111 233899999999 999999999999 99999999994444443 3
Q ss_pred CCCeEEEEEeccccccc
Q 024360 129 RNFNVCAVYLLDSQFIT 145 (268)
Q Consensus 129 ~~~~ii~v~l~d~~~~~ 145 (268)
|+|+++| +|.+.
T Consensus 523 -~kTll~v----THrL~ 534 (573)
T COG4987 523 -GKTLLMV----THRLR 534 (573)
T ss_pred -CCeEEEE----ecccc
Confidence 7888877 36654
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=4e-17 Score=163.79 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=81.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-C----cccChhhh--------------hhHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P----VAMDIREL--------------ISLEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-~----~~~~i~~~--------------i~~~~~m 63 (268)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .+.| + ..+++.++ -.+.+++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L 611 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 611 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence 4689999999999999999999999999999875421 1111 0 01111111 1256778
Q ss_pred HHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+++.+.. .+..+..+ +++||++++. +|++|||||||+ ||+.++..+. +.+..+ .+ ++|+|
T Consensus 612 ~~~gl~~~~-----~~~~~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIiv 680 (718)
T PLN03073 612 GSFGVTGNL-----ALQPMYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMV 680 (718)
T ss_pred HHCCCChHH-----hcCCccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEE
Confidence 888886321 12222222 3899999999 999999999999 9999987766 444443 23 66555
No 346
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=4.1e-17 Score=174.27 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=93.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC------------------------------------------------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------ 28 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~------------------------------------------------------ 28 (268)
-.++|+||+||||||+++.|.|++.|
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46899999999999999999999998
Q ss_pred CCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------HHHHHHHhCCC---------------C
Q 024360 29 VRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LEDVMEELGLG---------------P 70 (268)
Q Consensus 29 ~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~~~~m~~~~L~---------------~ 70 (268)
++|+|.++|.|... +.++| +| +-||+|++. +.++++..++. +
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence 69999999988632 34554 22 468999886 34444444332 2
Q ss_pred CCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 024360 71 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (268)
Q Consensus 71 ~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~~~~~ii~v 136 (268)
.|.. =...+.++.+|||||.. +|++|||||||+ ||..+.+.+. +.++.+. ..+.|+|+|
T Consensus 1355 ~G~~----LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1355 YGKS----LSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCCc----CCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence 2210 01122345999999999 999999999999 9999988877 7777775 346777666
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.70 E-value=1.1e-16 Score=159.77 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=84.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC---cCCCCCCCcccChhhhhh-----------------HHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~---~~~~~~y~~~~~i~~~i~-----------------~~~~ 62 (268)
..++|+||||||||||+++|+|+++|.+|+|.+.+..- ..+. ++....++++++. +.++
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 557 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQR-PYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQI 557 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCC-CCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence 46899999999999999999999999999988754210 0011 1111226666543 3456
Q ss_pred HHHhCCCCCCChhh----h---Hhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCe
Q 024360 63 MEELGLGPNGGLIY----C---MEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 63 m~~~~L~~~g~~~~----~---~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
++.+++.+...... . ...+. ++++++|||++.+ +|+++|+||||+ ||+.+.+.+. +.+++ .+.+
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t 631 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT 631 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence 77777754210000 0 01111 2234999999999 999999999999 9999987766 55544 3677
Q ss_pred EEEE
Q 024360 133 VCAV 136 (268)
Q Consensus 133 ii~v 136 (268)
++++
T Consensus 632 vI~i 635 (659)
T TIGR00954 632 LFSV 635 (659)
T ss_pred EEEE
Confidence 7655
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.70 E-value=7.7e-17 Score=151.81 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=95.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cccc-----Chhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~~~-----~i~~~i~----------- 58 (268)
-.++||||+|||||||.|+|.|..+|.+|.|.++|-|..+ ++++| +|++ ||.+||.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI 442 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence 3689999999999999999999999999999999977632 56788 5543 6777775
Q ss_pred --------HHHHHHHh------CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEEL------GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~------~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.|++-.+ .+|+-|.. =.-.++++.+||||+-. +|.+++||||-+ ||........ +-+
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G~~----LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~Ai 515 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGGAT----LSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-AAI 515 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCCCC----CCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-HHH
Confidence 33433332 12233211 01123355999999999 999999999999 9999988887 777
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
..++++|.++|+|
T Consensus 516 ~~~k~rG~~vvvi 528 (580)
T COG4618 516 LAAKARGGTVVVI 528 (580)
T ss_pred HHHHHcCCEEEEE
Confidence 7777778777665
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=1e-16 Score=172.08 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=92.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
..+||+||+|||||||+++|.|+++|++|+|.++|.|... +.+.+ +| +-|||+|++ +.
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence 3589999999999999999999999999999999988642 23444 22 347888875 44
Q ss_pred HHHHHhCCCC------CCChhhhH-----hhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 61 DVMEELGLGP------NGGLIYCM-----EHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~~~-----~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++..++.+ .| +-... +.. .++++.+||||+.+ +|+++||||||+ +|..+.+.+. +.+++..
T Consensus 1343 ~al~~a~l~~~I~~lp~G-Ldt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~ 1418 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFG-LDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF 1418 (1495)
T ss_pred HHHHHcCCHHHHHhCcCC-CCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 5556555532 11 00000 111 12233899999999 999999999999 9999987776 7777664
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
++.|+++|
T Consensus 1419 -~~~TvI~I 1426 (1495)
T PLN03232 1419 -KSCTMLVI 1426 (1495)
T ss_pred -CCCEEEEE
Confidence 36777666
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.69 E-value=8.5e-17 Score=171.88 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=88.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe-ccCCc-------CCCCCC-Cc-----ccChhhhhhH---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPA-------AENFDY-PV-----AMDIRELISL--------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~-~~d~~-------~~~~~y-~~-----~~~i~~~i~~--------- 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++ |.+.. ++.++| +| +.+|++++..
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~ 491 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence 4689999999999999999999999999999995 45442 123444 22 2366766643
Q ss_pred ----------------------------------------------------------HHHHHHhCCCCC------CCh-
Q 024360 60 ----------------------------------------------------------EDVMEELGLGPN------GGL- 74 (268)
Q Consensus 60 ----------------------------------------------------------~~~m~~~~L~~~------g~~- 74 (268)
.++++..++... |-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT 571 (1466)
T PTZ00265 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET 571 (1466)
T ss_pred hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence 122223333210 000
Q ss_pred -h--hhHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 75 -I--YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 75 -~--~~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
+ ..... ..+.++++||||++. +|++|||||||+ ||+.+...+. +.++++++ .|.|+|+|
T Consensus 572 ~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 572 LVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII 636 (1466)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence 0 00001 112234999999999 999999999999 9999998887 88888864 47777655
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=2.2e-16 Score=153.01 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=86.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc-CCc---CCCCCCCcccChhhhh----------hHHHHHHHhCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA---AENFDYPVAMDIRELI----------SLEDVMEELGLG 69 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~-d~~---~~~~~y~~~~~i~~~i----------~~~~~m~~~~L~ 69 (268)
-++|+||||+|||||+|+|+|.+.|.+|.|.+... ..+ ++...+.++.++.+++ .+...+..|++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999886421 110 0000111222343333 367788888887
Q ss_pred CCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 024360 70 PNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~ 142 (268)
+.. ....++.+| +.||+.+.. +|.+|||||||+ ||+.+...+- +.+..+ ..++++|. ||-+
T Consensus 430 ~~~-----~~~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL~~f---~Gtvl~VS-HDr~ 497 (530)
T COG0488 430 GED-----QEKPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EALLDF---EGTVLLVS-HDRY 497 (530)
T ss_pred hHH-----HhCchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHHHhC---CCeEEEEe-CCHH
Confidence 653 233333333 888988888 999999999999 9999985544 554443 45666663 4544
Q ss_pred cc
Q 024360 143 FI 144 (268)
Q Consensus 143 ~~ 144 (268)
++
T Consensus 498 Fl 499 (530)
T COG0488 498 FL 499 (530)
T ss_pred HH
Confidence 43
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=2.3e-16 Score=168.10 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=94.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC----CCCCceEEEeccCCc------CCCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPA------AENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l----~~~~G~v~i~~~d~~------~~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+|+|+|.. +|.+|+|.++|.++. +..+.| .+.+||+|++.
T Consensus 88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 167 (1394)
T TIGR00956 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT 167 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999999986 568999999997652 112333 23467777653
Q ss_pred -----------------HHHHHHHhCCCCCCChhhhHhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHh
Q 024360 59 -----------------LEDVMEELGLGPNGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (268)
Q Consensus 59 -----------------~~~~m~~~~L~~~g~~~~~~~~~~------~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~ 114 (268)
.+++++.+||.+...... -+... ++.++.||++++. +|+++++||||+ ||..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~v-g~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~ 244 (1394)
T TIGR00956 168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKV-GNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSAT 244 (1394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCcee-CCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHH
Confidence 123567778865311000 01111 1233999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEE
Q 024360 115 HVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 115 ~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
...++ +++++++++ |.+++++
T Consensus 245 ~~~i~-~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 245 ALEFI-RALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE
Confidence 99999 899999764 7776655
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=1e-16 Score=170.82 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=94.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccCCc----CCCCCC-------CcccChhhhhhH---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPA----AENFDY-------PVAMDIRELISL--------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d~~----~~~~~y-------~~~~~i~~~i~~--------- 59 (268)
-+++|+||||||||||+++|+|.++|+ +|+|.++|.+.. ...+.| .+.+||+|++..
T Consensus 192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 271 (1470)
T PLN03140 192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271 (1470)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999998 999999997652 122333 235677776542
Q ss_pred -----------------------------------------HHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHH
Q 024360 60 -----------------------------------------EDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEE 92 (268)
Q Consensus 60 -----------------------------------------~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~a 92 (268)
+++++.+||....... .-+.....+| +.||++
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~-vg~~~~rglSGGerkRVsia~a 350 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTI-VGDEMIRGISGGQKKRVTTGEM 350 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCce-eCCccccCCCcccceeeeehhh
Confidence 2355667775421000 0011222222 899999
Q ss_pred HhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 93 LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 93 l~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
++. +|+++++||||+ ||..+...++ +.++++++ .|.+++++
T Consensus 351 L~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 351 IVG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMS 393 (1470)
T ss_pred hcC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 999 999999999999 9999999999 88999875 47777655
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=99.67 E-value=1.7e-16 Score=170.87 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=93.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
..+||+|++|||||||+++|.|+++|++|+|.++|.|... +.+.+ +| +-|||+|+. +.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 3589999999999999999999999999999999998742 33444 22 347888875 44
Q ss_pred HHHHHhCCCC------CCChhhhH-----hhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 61 DVMEELGLGP------NGGLIYCM-----EHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~~~-----~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++..++.+ .| +-... +.. .++++.+|||||.+ +|+++||||||+ +|..+.+.+. +.+++..
T Consensus 1346 ~Al~~a~l~~~I~~lp~G-Ldt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~ 1421 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLG-LDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF 1421 (1622)
T ss_pred HHHHHcCcHHHHHhCccc-cCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC
Confidence 5555554421 11 00000 111 12233899999999 999999999999 9999987776 7777764
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.|+++|
T Consensus 1422 ~-~~TvI~I 1429 (1622)
T PLN03130 1422 K-SCTMLII 1429 (1622)
T ss_pred C-CCEEEEE
Confidence 4 6777655
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=4.3e-16 Score=126.52 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=97.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccCC----cC-CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d~----~~-~~~~y-------~~~~~i~~~i~--------- 58 (268)
.++-++||+|||||||+..+.|.+.+. +|++.+++.+. ++ +.++. +|.++|.+++-
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG 108 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG 108 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence 478899999999999999999999774 79999988654 22 22221 33444544432
Q ss_pred ------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+...+++.||... .+..+..+| +++-|+|.. .|+.+++|||++ ||...+.+.....+.+
T Consensus 109 ~aRr~~a~aAL~~~gL~g~------f~~dP~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~ 180 (213)
T COG4136 109 NARRNAANAALERSGLDGA------FHQDPATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSE 180 (213)
T ss_pred HHHHhhHHHHHHHhccchh------hhcChhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHH
Confidence 6778899998765 345554444 889999999 999999999999 9999998888777778
Q ss_pred HHhCCCeEEEEE
Q 024360 126 LKSRNFNVCAVY 137 (268)
Q Consensus 126 l~~~~~~ii~v~ 137 (268)
.+..|..++.|.
T Consensus 181 ~r~agiPtv~VT 192 (213)
T COG4136 181 VRAAGIPTVQVT 192 (213)
T ss_pred HHhcCCCeEEEe
Confidence 877798887773
No 356
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.6e-16 Score=130.15 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=95.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC---------------cCCCCCC-CcccCh------hhhh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------AAENFDY-PVAMDI------RELI--- 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~---------------~~~~~~y-~~~~~i------~~~i--- 57 (268)
.|+++=||+||||||+++++.+-+.|++|+|.+.-.+- ....++| .|.+.+ -|.+
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 58899999999999999999999999999999854321 1123444 221111 0111
Q ss_pred -------------hHHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 58 -------------SLEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 58 -------------~~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
.+.+++.++++.+..+.....-+.. +++++.|||.++. +-++++|||||+ ||..++.-+. ++
T Consensus 118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-el 194 (235)
T COG4778 118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-EL 194 (235)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-HH
Confidence 1567777777766532221112222 2344999999999 999999999999 9999998888 99
Q ss_pred HHHHHhCCCeEEEEE
Q 024360 123 VDHLKSRNFNVCAVY 137 (268)
Q Consensus 123 l~~l~~~~~~ii~v~ 137 (268)
|+.-+..|..++.+|
T Consensus 195 i~e~Ka~GaAlvGIF 209 (235)
T COG4778 195 IREAKARGAALVGIF 209 (235)
T ss_pred HHHHHhcCceEEEee
Confidence 999888899998886
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.65 E-value=4.2e-16 Score=167.60 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=93.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
..+||+|++|||||||+++|.|+++|++|+|.++|.|... +.+.| +| +-|||+|++ +.
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 3589999999999999999999999999999999998742 33444 22 347888876 45
Q ss_pred HHHHHhCCCC------CCChhhhH-----hhhh-hhHHHHHHHHHhcCCC-CCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 61 DVMEELGLGP------NGGLIYCM-----EHLE-DNLDDWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~~~-----~~~~-~~ls~~la~al~~~~~-p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++++..++.. .| +-... +... +.++.+|||||.+ + |++|||||||+ ||..+.+.+. +.+++.
T Consensus 1417 ~Al~~a~l~~~I~~lp~G-ldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~ 1492 (1560)
T PTZ00243 1417 AALELVGLRERVASESEG-IDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSA 1492 (1560)
T ss_pred HHHHHCCChHHHhhCccc-ccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence 5666666542 11 00000 1111 1233899999998 7 89999999999 9999998877 777765
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ +.|+|+|
T Consensus 1493 ~~-~~TvI~I 1501 (1560)
T PTZ00243 1493 FS-AYTVITI 1501 (1560)
T ss_pred CC-CCEEEEE
Confidence 33 5777665
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.65 E-value=5.9e-16 Score=166.42 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=92.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
..+||+|++|||||||+++|.|+++|++|+|.++|.|... ..+.+ +| +-|||+|++ +.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 3589999999999999999999999999999999998742 33444 22 247888876 34
Q ss_pred HHHHHhCCCC------CCChhhhH-----hhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 61 DVMEELGLGP------NGGLIYCM-----EHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 61 ~~m~~~~L~~------~g~~~~~~-----~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++..++.+ .| +-... +.. .+.++.+||||+.+ +|+++||||||+ +|..+...+. +.+++..
T Consensus 1393 ~al~~a~l~~~I~~lp~G-Ldt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~ 1468 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDK-LDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF 1468 (1522)
T ss_pred HHHHHcCcHHHHhhCccC-CCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 4555555532 11 00000 111 12233999999999 999999999999 9999987766 7777664
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.|+++|
T Consensus 1469 ~-~~TvI~I 1476 (1522)
T TIGR00957 1469 E-DCTVLTI 1476 (1522)
T ss_pred C-CCEEEEE
Confidence 3 6777665
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=1.4e-15 Score=152.73 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=78.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC---CCCCceEEEeccCCcCCCC---------------------CC-Ccc-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAENF---------------------DY-PVA------- 50 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l---~~~~G~v~i~~~d~~~~~~---------------------~y-~~~------- 50 (268)
-.+||+||||||||||+++|+|.. .|.+|+|.+.++.+..... .+ .+.
T Consensus 204 e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~ 283 (718)
T PLN03073 204 RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFET 283 (718)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368999999999999999999864 5788999876654311110 00 000
Q ss_pred ------------cC---hhhhh-----------------hHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHH
Q 024360 51 ------------MD---IRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEE 92 (268)
Q Consensus 51 ------------~~---i~~~i-----------------~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~a 92 (268)
.+ +++.+ .+.+++..+|+.+.. .+..+..+| ++||++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-----~~~~~~~LSgG~k~rv~LA~a 358 (718)
T PLN03073 284 ETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-----QVKATKTFSGGWRMRIALARA 358 (718)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-----HhCchhhCCHHHHHHHHHHHH
Confidence 00 00000 023344445553210 122333333 899999
Q ss_pred HhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 93 LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 93 l~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|+. +|+++||||||+ ||+.++..+. ++++.+ +.++++|
T Consensus 359 L~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv 397 (718)
T PLN03073 359 LFI--EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV 397 (718)
T ss_pred Hhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence 999 999999999999 9999987776 776665 5566555
No 360
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=3e-15 Score=131.49 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=79.4
Q ss_pred eEEEEEcCCCccHHHHHHHHH----------------cCCCCCCc--------eEEEeccCC----cC------CCCCC-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDP----AA------ENFDY- 47 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~----------------g~l~~~~G--------~v~i~~~d~----~~------~~~~y- 47 (268)
.+++|+||||||||||+++|+ +++.+.+| ++.+.|.+. .. +.+++
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 478999999999999999998 44555555 555555321 11 11222
Q ss_pred Cc-------ccChhhhhhHHHHHHHhCCCCCCC-------hh-------hhHhhhhhhH------HHHHHHHHhc--CCC
Q 024360 48 PV-------AMDIRELISLEDVMEELGLGPNGG-------LI-------YCMEHLEDNL------DDWLAEELDN--YLD 98 (268)
Q Consensus 48 ~~-------~~~i~~~i~~~~~m~~~~L~~~g~-------~~-------~~~~~~~~~l------s~~la~al~~--~~~ 98 (268)
++ ..+..+ +...++.+++.+... .. ...+.....+ +.+||++++. ..+
T Consensus 104 ~~~~~l~~~~~t~~e---i~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 104 KDEYFLDKKNVTKND---VMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred CCEEEECCeEcCHHH---HHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 11 112222 445566666654210 00 0011222222 2889999962 116
Q ss_pred CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 024360 99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (268)
Q Consensus 99 p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~ 137 (268)
|+++|+|||++ +|+.+++.+. +.++++++ +.+++++|
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT 218 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 89999999999 9999998888 78888755 66665554
No 361
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=6.5e-16 Score=132.37 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=77.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCC---------ceEEEeccCCcC----CCCCC-CcccC----hhhhhhHHHHHHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMD----IRELISLEDVMEE 65 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~---------G~v~i~~~d~~~----~~~~y-~~~~~----i~~~i~~~~~m~~ 65 (268)
+++|+||||||||||+++|+|++.+.. |++.+.|.++.. ..+.+ +++.+ ....-.+.++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 678999999999999999999986552 356666665421 12222 22111 1011234555555
Q ss_pred hCCCCCCChhhhHhhhhh--hHHHHHHHHHhc--CCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 66 LGLGPNGGLIYCMEHLED--NLDDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~--~ls~~la~al~~--~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.... ......+.. ..++++|++++. ..+|+++|+|||++ +|+.....++ ++++++++ +.+++++
T Consensus 104 ---~~~~--~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii 172 (197)
T cd03278 104 ---PGKK--VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI 172 (197)
T ss_pred ---CCcc--ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence 1110 000111221 123888888862 11679999999999 9999998888 88888855 5666554
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.62 E-value=3.1e-15 Score=130.68 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCC--CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCC
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p--~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~ 130 (268)
.+.++.+++.+.. ++..+.. +++.||++++. +| +++|+|||++ ||+.++..+. ++++++++.|
T Consensus 118 ~~~l~~~~l~~~~-----~~~~~~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g 189 (226)
T cd03270 118 LGFLVDVGLGYLT-----LSRSAPTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLG 189 (226)
T ss_pred HHHHHHCCCCccc-----ccCccCcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCC
Confidence 3566777776421 1233322 23899999999 87 6999999999 9999998888 8888887667
Q ss_pred CeEEEE
Q 024360 131 FNVCAV 136 (268)
Q Consensus 131 ~~ii~v 136 (268)
.+++++
T Consensus 190 ~tii~i 195 (226)
T cd03270 190 NTVLVV 195 (226)
T ss_pred CEEEEE
Confidence 777665
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=1.9e-15 Score=162.13 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=87.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~--- 69 (268)
-.++|+||||||||||+++|+|+++|++|+|.+.|.- ...+. ++..+.|+++++. ..++++..+|.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence 3689999999999999999999999999999987721 01111 1212347888775 22333333321
Q ss_pred ---CCCChhh----hHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 70 ---PNGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 70 ---~~g~~~~----~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|.|.... ..+.. .++++++||||+.. +|+++|||||++ ||+.+.+.++..++..+.+ +.++|++
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~~tvilv 604 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-NKTRILV 604 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEE
Confidence 1111000 00111 12234999999999 999999999999 9999999998556666644 6777655
No 364
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.6e-15 Score=135.86 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=97.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCC-CCc-------ccChhhh----------hhHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YPV-------AMDIREL----------ISLEDVME 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~-y~~-------~~~i~~~----------i~~~~~m~ 64 (268)
.++.|+|.|||||||+|+.++|+++|++|+|+++|.....++.. |.. +.-..+. =.++.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq 429 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ 429 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence 47889999999999999999999999999999999876544321 100 0000000 01556666
Q ss_pred HhCCCCC----CChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 024360 65 ELGLGPN----GGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (268)
Q Consensus 65 ~~~L~~~----g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l 138 (268)
++.+... ++-....+...++ .+.++..|+.. +.++++|||=.+ -||.-|+...+.++-.+++.|+||++|.
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs- 506 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS- 506 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence 6665432 1111111111111 12667777888 999999999999 9999999999899999988899998775
Q ss_pred ccccccc
Q 024360 139 LDSQFIT 145 (268)
Q Consensus 139 ~d~~~~~ 145 (268)
+|-|++.
T Consensus 507 HDd~YF~ 513 (546)
T COG4615 507 HDDHYFI 513 (546)
T ss_pred cCchhhh
Confidence 6777754
No 365
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=2e-15 Score=133.70 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEecc-CCc--------C--------CC---------CCCCcccChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DPA--------A--------EN---------FDYPVAMDIRE 55 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~-d~~--------~--------~~---------~~y~~~~~i~~ 55 (268)
-+++|+|||||||||++++|++++.+. .|++.+.+. +.. . ++ ....+.++|.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 468999999999999999999998765 345555443 100 0 00 00001111111
Q ss_pred ------------------hhhHHHHHHHhCCCCCCCh--------------hhhHhhhhhhH------HHHHHHHHh---
Q 024360 56 ------------------LISLEDVMEELGLGPNGGL--------------IYCMEHLEDNL------DDWLAEELD--- 94 (268)
Q Consensus 56 ------------------~i~~~~~m~~~~L~~~g~~--------------~~~~~~~~~~l------s~~la~al~--- 94 (268)
.-.+.++++.+++...... ....+..+..+ ++++|++++
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 1126678888998632100 00012222222 288888886
Q ss_pred -cCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 95 -NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 95 -~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. +|+++|+|||++ +|+..+..+. ++++++.+ |.++|++
T Consensus 186 ~~--~~~illlDEPt~~ld~~~~~~~~-~~l~~~~~-g~~ii~i 225 (251)
T cd03273 186 FK--PAPMYILDEVDAALDLSHTQNIG-RMIKTHFK-GSQFIVV 225 (251)
T ss_pred cc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHcC-CCEEEEE
Confidence 5 789999999999 9999998888 88888754 6666655
No 366
>PLN03130 ABC transporter C family member; Provisional
Probab=99.60 E-value=3e-15 Score=161.43 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=89.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC-ceEEEeccCCcCCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~-G~v~i~~~d~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~-- 70 (268)
-.++|+||+|||||||+++|.|.++|.+ |+|.+.+.=-....-++-.+-|||||+. ++++++..+|.+
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 3589999999999999999999999999 8988644211111123333568888876 455555554421
Q ss_pred ----CCChhhh----Hhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 ----NGGLIYC----MEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ----~g~~~~~----~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.|..... ... ..++++++||||+.. +|+++|||||++ ||..+.+.++.+.++.+.+ +.|+|+|
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~-~kTvIlV 796 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDELR-GKTRVLV 796 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHhc-CCEEEEE
Confidence 2110000 111 112344999999999 999999999999 9999988887677766543 5666554
No 367
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.3e-15 Score=123.45 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=92.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------C------CCCC---Cc----------ccCh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------E------NFDY---PV----------AMDI 53 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~------~~~y---~~----------~~~i 53 (268)
.+.+|+|.+|||||||+++|++.+.|+.|.|.+...+-.. + .-++ .| .-+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4689999999999999999999999999999986533110 0 0000 00 0111
Q ss_pred hhh-----------h--hHHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 54 REL-----------I--SLEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 54 ~~~-----------i--~~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
-|- + .+.++++++.+.+.. .+..+..+| ..|||.|.. .|.++++||||- ||..
T Consensus 113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~R-----iDD~PrtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVS 185 (258)
T COG4107 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDR-----IDDLPRTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVS 185 (258)
T ss_pred chhHHhhhhhhhhhHHHHHHHHHHhcccCccc-----ccCcccccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchh
Confidence 111 1 167899999987653 344444333 889999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 114 THVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
.+...+ ++++.|.. .+..+++|
T Consensus 186 VQARLL-DllrgLv~~l~la~viV 208 (258)
T COG4107 186 VQARLL-DLLRGLVRELGLAVVIV 208 (258)
T ss_pred hHHHHH-HHHHHHHHhcCceEEEE
Confidence 998888 99999874 47777655
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=3.5e-15 Score=160.14 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=92.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~~ 61 (268)
.+||+|++|||||||+++|.|+++ .+|+|.++|.|... +.+.| +| +-|||+|++ +.+
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 589999999999999999999997 79999999988642 33444 22 347888886 456
Q ss_pred HHHHhCCCCC-----CChhhhHh-----hh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 62 VMEELGLGPN-----GGLIYCME-----HL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 62 ~m~~~~L~~~-----g~~~~~~~-----~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
+++..++... +++-.... .. .+.+...|||+|.. +|++|||||||+ +|..+...+. +.++...+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~~- 1401 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSFS- 1401 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHcC-
Confidence 6777666321 11100011 11 12233899999999 999999999999 9999988877 77776543
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
+.|+|+|
T Consensus 1402 ~~TvI~I 1408 (1490)
T TIGR01271 1402 NCTVILS 1408 (1490)
T ss_pred CCEEEEE
Confidence 6777766
No 369
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=3.6e-15 Score=139.12 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=88.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~~~~~y~~~~~i~~~i~------------~~~~m~~~~L 68 (268)
.+++++||||-|||||+++|+|.++|++|. ..++.. ..+.+.-..+-||++++. ..++++-++|
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 579999999999999999999999999997 111111 112221123456776654 2345555555
Q ss_pred CCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 024360 69 GPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~ 141 (268)
.+- ++....++| ++||.+|.. +++++++|||.+ ||...+..+. +.|+++..++.+..+|.-+|-
T Consensus 446 ~~i------~e~~v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 446 EDL------LERPVDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred HHH------HhcccccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecce
Confidence 443 455555544 899999999 999999999999 9999887766 888888755333334433443
No 370
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.59 E-value=1.2e-14 Score=125.26 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=74.0
Q ss_pred EEEEEcCCCccHHHHHHHHH----cCCCCCCceEEEec----cCCcCCCCCC------------CcccChhhhhh---HH
Q 024360 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY------------PVAMDIRELIS---LE 60 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~----g~l~~~~G~v~i~~----~d~~~~~~~y------------~~~~~i~~~i~---~~ 60 (268)
+++|+||||||||||+++|+ |...+.+|.+.... .......+.+ ...+++.+++. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 68999999999999999995 88888777554111 1111001111 11223443331 11
Q ss_pred HHHHHhCCCC---CCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH-HHHHHHHHHHHhC-CCeEE
Q 024360 61 DVMEELGLGP---NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR-NFNVC 134 (268)
Q Consensus 61 ~~m~~~~L~~---~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~-~i~~~ll~~l~~~-~~~ii 134 (268)
++.+.++-.+ .+|.. ....-.+++++++++.. +|+++++|||++ ||+..+. .+. ++++.++++ +.+++
T Consensus 104 ~~~~~~~~~~~~LS~G~~---~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~ii 177 (204)
T cd03240 104 ESNWPLLDMRGRCSGGEK---VLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQLI 177 (204)
T ss_pred HHHHHHhcCccccCccHH---HHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCEEE
Confidence 1111111111 11100 00000012568889988 999999999999 9999998 777 888888765 66766
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
++
T Consensus 178 ii 179 (204)
T cd03240 178 VI 179 (204)
T ss_pred EE
Confidence 55
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=5.8e-15 Score=151.51 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=103.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC---C---cccChhhhhh-------HHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---P---VAMDIRELIS-------LEDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y---~---~~~~i~~~i~-------~~~~ 62 (268)
..++|+||+||||||.+..|-.++.|++|.|.++|.|... .+++. . .+-||||++. .+++
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence 3589999999999999999999999999999999988743 22322 1 2568888876 3344
Q ss_pred HHHhCCC---------CCCChhhh----Hh-hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 63 MEELGLG---------PNGGLIYC----ME-HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 63 m~~~~L~---------~~g~~~~~----~~-~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++...+. |+|-.-.+ .+ .-.++++.+||||+.+ +|++|||||-|+ ||..+-+- .++-+++..
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErv-VQeALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERV-VQEALDRAM 1173 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHH-HHHHHHHhh
Confidence 4432221 22210000 00 1122355999999999 999999999999 99998754 558888886
Q ss_pred hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 128 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
. |.|+|+| +|.++ ++-+ ...|.|+.+.-..++.
T Consensus 1174 ~-gRT~IvI----AHRLS--------------TIqn--aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1174 E-GRTTIVI----AHRLS--------------TIQN--ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred c-CCcEEEE----ecchh--------------hhhc--CCEEEEEECCEEEecc
Confidence 5 4554444 24432 2111 2356788777666654
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.58 E-value=6.8e-15 Score=158.36 Aligned_cols=129 Identities=19% Similarity=0.153 Sum_probs=82.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~-- 70 (268)
.+++|+||||||||||+++|+|.++|++|+|.+.+.= ...+. +...+.++++++. +.++++..++..
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL 765 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence 3689999999999999999999999999998864210 00011 1112357777764 122233222210
Q ss_pred ----CCChhhhHhhhh------hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 ----NGGLIYCMEHLE------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ----~g~~~~~~~~~~------~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.| +........ ++++++|||++.. +|+++|||||++ ||+.+...+++.++.... .|.++|++
T Consensus 766 ~~l~~g-~~t~i~~~g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlv 838 (1560)
T PTZ00243 766 AQLGGG-LETEIGEKGVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA 838 (1560)
T ss_pred HHhhcc-chHHhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 00 000011111 2233999999999 999999999999 999998888855554433 36676655
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.57 E-value=7.2e-15 Score=127.16 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHHHHhcC--------CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~--------~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+|++++.. .+|+++|+|||++ +|+..+..+. ++++++++++.+++++
T Consensus 132 ~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~tii~i 189 (213)
T cd03279 132 ASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRMVGVI 189 (213)
T ss_pred HHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 8899999741 1578999999999 9999998887 8888887667777655
No 374
>PLN03232 ABC transporter C family member; Provisional
Probab=99.57 E-value=9.9e-15 Score=156.87 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=86.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-CCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~-- 70 (268)
-.++|+||+|||||||+++|.|.++|.+|.+.......+ ...-++-.+-|||||+. +.++++..++.+
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di 723 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDL 723 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 358999999999999999999999999886542211110 01112223457888876 455666555422
Q ss_pred ----CCChhhh----Hhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 ----NGGLIYC----MEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ----~g~~~~~----~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.|..-.. ... ..++++++||||+.. +|+++|||||++ ||..+.+.++.++++... ++.|+|+|
T Consensus 724 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv 796 (1495)
T PLN03232 724 DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV 796 (1495)
T ss_pred HhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence 2110000 011 112344999999999 999999999999 999999888867776653 35665554
No 375
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.56 E-value=1.1e-14 Score=156.58 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=85.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC-cCCCCCCCcccChhhhhh---------HHHHHHHhC-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS---------LEDVMEELG----- 67 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~-~~~~~~y~~~~~i~~~i~---------~~~~m~~~~----- 67 (268)
..++|+||||||||||+++|+|+++|.+|+|.++|.-- ..+. ++..+.||++++. .+++++..+
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 36899999999999999999999999999999876210 0111 2223457888775 233333322
Q ss_pred -CCCCCChh----hhHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH--HHHhCCCeEEEE
Q 024360 68 -LGPNGGLI----YCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAV 136 (268)
Q Consensus 68 -L~~~g~~~----~~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~--~l~~~~~~ii~v 136 (268)
.-|.|... ...+.. .++++++||||+.. +|+++|||||++ ||+.+.+.+++.+++ .+ .++.+++++
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlv 818 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILV 818 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEE
Confidence 22222100 001111 12234999999999 999999999999 999999998844443 22 235666655
No 376
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.1e-14 Score=137.50 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=76.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEe-------ccCCcCCCCCCCcccChhhhhh-------------HHH-HH
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS-------------LED-VM 63 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~-------~~d~~~~~~~y~~~~~i~~~i~-------------~~~-~m 63 (268)
+|++||||+|||||+|+|+. |.|... |-+.....-....+..+.+++. +.. ++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 58999999999999999998 333222 1111000000011122222221 122 55
Q ss_pred HHhCCCCCCChhhhHhhhhhh--HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 024360 64 EELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~--ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d 140 (268)
..+|..+--. ..+...+.+. ++.+||||+.. +||+|+|||||+ ||..+.. .+-..|+....|+++| -+|
T Consensus 183 ~glGFt~emq-~~pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~----WLe~yL~t~~~T~liV-SHD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQ-LQPTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVA----WLENYLQTWKITSLIV-SHD 254 (582)
T ss_pred HhCCCCHHHH-hccccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHH----HHHHHHhhCCceEEEE-ecc
Confidence 5677766410 0011222222 33999999999 999999999999 9998763 3334455555666655 378
Q ss_pred cccccCHHHHH
Q 024360 141 SQFITDVTKFI 151 (268)
Q Consensus 141 ~~~~~d~~~~~ 151 (268)
+.|+......+
T Consensus 255 r~FLn~V~tdI 265 (582)
T KOG0062|consen 255 RNFLNTVCTDI 265 (582)
T ss_pred HHHHHHHHHHH
Confidence 87776554433
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=2.3e-15 Score=130.37 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHhc--CCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~--~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.||++++. ..+|+++++|||++ +|+..+..+. ++++++++ +.+++++
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~iiv 186 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFIVI 186 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEEEE
Confidence 888988863 11589999999999 9999998877 88888865 4455444
No 378
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=6.9e-15 Score=151.23 Aligned_cols=125 Identities=21% Similarity=0.287 Sum_probs=97.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--CCCceEEEeccCCc----CCCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPA----AENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~--~~~G~v~i~~~d~~----~~~~~y-------~~~~~i~~~i~----------- 58 (268)
..++++|++|||||||+++|+|=.. ..+|+|.|+|.... ++..+| .+.+||||.+.
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 3689999999999999999999753 35789999997653 234455 23578888765
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhh----HH------HHHHHHHhcCCCC-CEEEEeCCCc-CCHHhHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDN----LD------DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~----ls------~~la~al~~~~~p-~~lilDEP~~-LD~~~~~~i 118 (268)
++++|+.++|.+.. +..++. +| +.||-.|+. +| .+|+|||||+ ||..+.-.+
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~------daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i 969 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYA------DALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIV 969 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhh------hhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHH
Confidence 78999999998642 333322 22 556666777 99 8999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
+ +++++++..|.+|++.
T Consensus 970 ~-~~lrkla~tGqtIlCT 986 (1391)
T KOG0065|consen 970 M-RFLRKLADTGQTILCT 986 (1391)
T ss_pred H-HHHHHHHhcCCeEEEE
Confidence 8 9999999889988765
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.53 E-value=7.2e-14 Score=128.95 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=112.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----CCceEEEeccCCcC-----------CCCC---------CCcccChhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFD---------YPVAMDIRELI 57 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----~~G~v~i~~~d~~~-----------~~~~---------y~~~~~i~~~i 57 (268)
..++++|.+|||||-..+.+.++++. -+|+|.+.|.|... ..+. ..|-.+|...+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi 116 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL 116 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence 46899999999999999999999865 37899999987621 1111 12333444433
Q ss_pred h-----------------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 58 S-----------------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 58 ~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
. +-++++.+|+..-.. .++.++.++| +.||.|++. +|++||.||||. ||..
T Consensus 117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~---rl~~yPHeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVt 191 (534)
T COG4172 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEK---RLDAYPHELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVT 191 (534)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh---hhhhCCcccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhh
Confidence 2 567788888864322 1466666555 999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
.+.+++ ++++.|+++ |..++++ +|.+.=..+|.+ .+.|+.+...++..
T Consensus 192 vQaQIL-~Ll~~Lq~~~gMa~lfI----THDL~iVr~~AD---------------rV~VM~~G~ivE~~ 240 (534)
T COG4172 192 VQAQIL-DLLKELQAELGMAILFI----THDLGIVRKFAD---------------RVYVMQHGEIVETG 240 (534)
T ss_pred hHHHHH-HHHHHHHHHhCcEEEEE----eccHHHHHHhhh---------------hEEEEeccEEeecC
Confidence 999999 999999854 8888766 355543444443 55677777777654
No 380
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=4e-14 Score=125.18 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=81.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC------------cC---------C--------------CCCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------------AA---------E--------------NFDYP 48 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~------------~~---------~--------------~~~y~ 48 (268)
+++|+|||||||||++.+|++.+.+..|.+...+.+. .. + ...|.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 6889999999999999999998876555544322110 00 0 00000
Q ss_pred cccChhhhhhHHHHHHHhCCCCCCChh--------hh--------HhhhhhhH------HHHHHHHHhc--CCCCCEEEE
Q 024360 49 VAMDIRELISLEDVMEELGLGPNGGLI--------YC--------MEHLEDNL------DDWLAEELDN--YLDDDYLVF 104 (268)
Q Consensus 49 ~~~~i~~~i~~~~~m~~~~L~~~g~~~--------~~--------~~~~~~~l------s~~la~al~~--~~~p~~lil 104 (268)
.+-.....-.++++++.+|+.....-. .- .+..+..+ ++.||++++. ..+|+++|+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 000000011256788888886431100 00 01111222 2889999875 114899999
Q ss_pred eCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 105 DEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|||++ ||+..+..+. +++++++++|.+++++
T Consensus 184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~i 215 (247)
T cd03275 184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVI 215 (247)
T ss_pred ecccccCCHHHHHHHH-HHHHHhccCCcEEEEE
Confidence 99999 9999998888 8888887667777666
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.51 E-value=4.2e-14 Score=117.61 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=88.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+.-+|||||||||||+..++|++ |-+|+|.+.|.+... +...| +..+-|..+++
T Consensus 26 e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~ 104 (248)
T COG4138 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE 104 (248)
T ss_pred eEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHH
Confidence 356699999999999999999986 578999999987621 11111 11123444433
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcC---CC--CCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNY---LD--DDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~---~~--p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++...+++++. +.+...++| +.+|...... .+ .+++|+|||.+ ||.......- .++.+
T Consensus 105 ~i~~i~~~L~l~DK------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~ 177 (248)
T COG4138 105 LLNDVAGALALDDK------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSA 177 (248)
T ss_pred HHHHHHhhhcccch------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHH
Confidence 6778888899876 455555555 4455444332 13 36999999999 9998775555 89999
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
+.+.|.+||+.
T Consensus 178 ~c~~G~~vims 188 (248)
T COG4138 178 LCQQGLAIVMS 188 (248)
T ss_pred HHhCCcEEEEe
Confidence 98889988755
No 382
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.51 E-value=5.8e-14 Score=132.09 Aligned_cols=150 Identities=16% Similarity=0.215 Sum_probs=100.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Ccc-----cChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~~-----~~i~~~i~----------- 58 (268)
..++++||+|+||||+++.+-.+...++|.|.++|+|..+ ..++. ||+ -||..++.
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV 644 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence 4689999999999999999999999999999999999732 22333 221 12222222
Q ss_pred -----HHHHHHH-hC--------CCCCCChhhhHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 -----LEDVMEE-LG--------LGPNGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 -----~~~~m~~-~~--------L~~~g~~~~~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++=++ ++ .|..| ++. ..+++++++||++.+ .|.++++||.|+ ||..+.+.+- .-
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERG-----LkLSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aa 716 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERG-----LKLSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AA 716 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcc-----cccCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HH
Confidence 1111111 11 12222 111 123456999999999 999999999999 9999998877 77
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
+.++.++..+|++.|-+++.. +. ..|-|+++.-.++..
T Consensus 717 L~rlca~RTtIVvAHRLSTiv-------------------nA--D~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 717 LARLCANRTTIVVAHRLSTIV-------------------NA--DLILVISNGRIVERG 754 (790)
T ss_pred HHHHhcCCceEEEeeeehhee-------------------cc--cEEEEEeCCeEeecC
Confidence 888877666676666443322 21 245677777776655
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.50 E-value=6.4e-14 Score=133.00 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=81.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC-c--C----CCCCCCc---------ccChhhhhhHHHHHHHhCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--A----ENFDYPV---------AMDIRELISLEDVMEELGL 68 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~-~--~----~~~~y~~---------~~~i~~~i~~~~~m~~~~L 68 (268)
+++|||||+|||||+|+++|.+.|..|.|.-..... + . +..+|.. .-+.++.=.++.++.+|||
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgL 498 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGL 498 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCC
Confidence 689999999999999999999999999987543221 1 1 1112200 0112233336778899999
Q ss_pred CCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.... ......++| +.+|+.+.. .|.+|+|||||+ ||..+..... +.|. ....++|.|
T Consensus 499 tgd~-----q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiN---e~~Ggvv~v 562 (614)
T KOG0927|consen 499 TGDA-----QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAIN---EFPGGVVLV 562 (614)
T ss_pred Cccc-----cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHh---ccCCceeee
Confidence 7553 233333333 888888888 999999999999 9999874444 4443 333445544
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=129.18 Aligned_cols=122 Identities=23% Similarity=0.286 Sum_probs=92.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC---------------------------CCCCC---Cc---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDY---PV--- 49 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~---------------------------~~~~y---~~--- 49 (268)
.++||+||||-||||-+++|+|.+.|.=|+.. -+|.. ....| .|
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57999999999999999999999999877532 11211 01111 11
Q ss_pred ccChhhhhh-------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhH
Q 024360 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (268)
Q Consensus 50 ~~~i~~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~ 115 (268)
.-++++.+. .++++++++|..- +++-..++| ++||.++.. ++++++||||++ ||...+
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nv------l~r~v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qR 249 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENV------LDRDVSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQR 249 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhh------hhhhhhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHH
Confidence 124555544 6788999998765 455555544 899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEE
Q 024360 116 VPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 116 ~~i~~~ll~~l~~~~~~ii~v 136 (268)
-.+. ++++.|.+.+..+++|
T Consensus 250 l~~a-r~Irel~~~~k~ViVV 269 (591)
T COG1245 250 LNAA-RVIRELAEDGKYVIVV 269 (591)
T ss_pred HHHH-HHHHHHhccCCeEEEE
Confidence 8888 9999998767777666
No 385
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.48 E-value=5.5e-13 Score=118.96 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhh------hHHHHHHHHHhcCCC---CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~------~ls~~la~al~~~~~---p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
..++++.+||+... ++.... .+++.||++|.. + |+++|||||++ ||+..+..+. ++++++.+
T Consensus 149 ~~~~L~~vgL~~l~-----l~~~~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~ 220 (261)
T cd03271 149 KLQTLCDVGLGYIK-----LGQPATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVD 220 (261)
T ss_pred HHHHHHHcCCchhh-----hcCccccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHh
Confidence 34567778887520 122222 233899999998 6 79999999999 9999998888 88898887
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
.|.+++++
T Consensus 221 ~g~tvIii 228 (261)
T cd03271 221 KGNTVVVI 228 (261)
T ss_pred CCCEEEEE
Confidence 78887666
No 386
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.5e-13 Score=124.18 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=86.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++++||+|+||||+++.+..++.+++|.|.++|+|... ..++. |+ +-++..++. +
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev 369 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence 3589999999999999999999999999999999998632 11222 21 112222222 1
Q ss_pred HHHHHH------hCCCCCC-----ChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEE------LGLGPNG-----GLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~------~~L~~~g-----~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
....+. +.-.|.| |.+.-+=...+++++++||++.+ +|++++|||.|+ ||..+.+.+. .-++...
T Consensus 370 ~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~ 446 (497)
T COG5265 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVS 446 (497)
T ss_pred HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh
Confidence 111111 1222322 00000112223466999999999 999999999999 9999988877 7778876
Q ss_pred hCCCeEEEEE
Q 024360 128 SRNFNVCAVY 137 (268)
Q Consensus 128 ~~~~~ii~v~ 137 (268)
+...++++.|
T Consensus 447 ~~rttlviah 456 (497)
T COG5265 447 AGRTTLVIAH 456 (497)
T ss_pred CCCeEEEEee
Confidence 5445555554
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.43 E-value=1.7e-13 Score=117.64 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=64.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCChhhhH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-----~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~ 78 (268)
+++|+||||||||||+|+++|.... ...|.+.......+ .+.+++++++.. +++.. .
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------~ 88 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------Y 88 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecCccCcccceEEEeccchhcccc-------ccChH------H
Confidence 6789999999999999999986531 11222211111111 223444444321 22111 0
Q ss_pred hhhhhhHHHHHHHHHhcCC--CCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 79 EHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 79 ~~~~~~ls~~la~al~~~~--~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
... .++ ...+.... +|+++|+|||++ +|+..+..+...+++.+.+.+.+++++
T Consensus 89 ~e~-~~~----~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv 144 (199)
T cd03283 89 AEL-RRL----KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS 144 (199)
T ss_pred HHH-HHH----HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 111 122 22222222 899999999999 999998777656888887666666544
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.42 E-value=1.9e-12 Score=110.97 Aligned_cols=39 Identities=5% Similarity=0.000 Sum_probs=33.4
Q ss_pred HHHHHHH----hcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh
Q 024360 87 DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 87 ~~la~al----~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
++||+++ +. +|+++|+|||++ +|...+..+. ++++++.+
T Consensus 118 ~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~ 161 (198)
T cd03276 118 STVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAK 161 (198)
T ss_pred HHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHh
Confidence 7888888 46 999999999999 9999998888 77777643
No 389
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.42 E-value=5.5e-13 Score=114.29 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
..++++ +. +|+++++|||++ +|+..+..+...+++.+++.+.+++++
T Consensus 100 ~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~ 147 (200)
T cd03280 100 ARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT 147 (200)
T ss_pred HHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 444444 35 899999999999 999999888767888887667776544
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.39 E-value=2e-12 Score=125.84 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=87.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-C-cCCCCCCCcccChhhhhh------------HHHHHHHhCCCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~-~~~~~~y~~~~~i~~~i~------------~~~~m~~~~L~~ 70 (268)
+.|.||||||||||+|+|+|+-+--+|+|.+-... . --..-||.|.-+.|+.+. +.+++.++||++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 57999999999999999999999889988764111 0 011234544345555543 678888999986
Q ss_pred CCChhh-----hHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 71 NGGLIY-----CMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ~g~~~~-----~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
...-.. .... ..+++++++||.+.+ +|+++++||-|+ ||..+...+. ++++.-- -+.++|.|
T Consensus 502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 421100 0011 113455999999999 999999999999 9999987777 5544321 26777766
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.37 E-value=1.7e-12 Score=135.90 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=98.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~~ 61 (268)
-+||+|..|||||||.+++-++..|.+|+|.|+|.|... ..+.. || .=|+|.|++ +-+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence 489999999999999999999999999999999998743 22322 22 225555554 334
Q ss_pred HHHHhCCCCC-----CChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 62 VMEELGLGPN-----GGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 62 ~m~~~~L~~~-----g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
++++.+|... +++-.....-..|+| +.|||||.+ +.+++++||.|+ +|+.+-.- +++.|+.--+
T Consensus 1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~l-IQ~tIR~~F~- 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDAL-IQKTIREEFK- 1323 (1381)
T ss_pred HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHH-HHHHHHHHhc-
Confidence 4444444321 001000111112222 899999999 999999999999 99998744 4466665433
Q ss_pred CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccC
Q 024360 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (268)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~ 179 (268)
+.||+.| +|.+... ++...|-|+.+..+++
T Consensus 1324 dcTVltI----AHRl~TV----------------md~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1324 DCTVLTI----AHRLNTV----------------MDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred CCeEEEE----eeccchh----------------hhcCeEEEeeCCeEee
Confidence 5777655 4554422 1234666777776554
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.37 E-value=8e-13 Score=126.24 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=97.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC----------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y----------~~~~~i~~~i~------ 58 (268)
.|+||.|--|||+|-++++|.|+.++.+|+|.++|..... ..+.| ....+|++|++
T Consensus 286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 5899999999999999999999999999999999975422 12333 23566777765
Q ss_pred ---------------HHHHHHHhCCCCCCChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ---------------~~~~m~~~~L~~~g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
++++.+.+++..............+| +++.||+.|.. +|++||+||||. +|.-++.++. +
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy-~ 442 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY-R 442 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-H
Confidence 34444455553322111111112222 23899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
++++++++|.+|+++
T Consensus 443 li~~lA~~G~ail~i 457 (500)
T COG1129 443 LIRELAAEGKAILMI 457 (500)
T ss_pred HHHHHHHCCCEEEEE
Confidence 999999999999876
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=3.4e-12 Score=133.70 Aligned_cols=131 Identities=19% Similarity=0.223 Sum_probs=97.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhh---------HHHHHHHhCCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN-- 71 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L~~~-- 71 (268)
..++|+||-|||||+|+.+|.|.++..+|+|.+.|.---...-++-++-||||||- .+++++...|.+.
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle 627 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE 627 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence 35899999999999999999999999999999998622222334455779999986 6777777666432
Q ss_pred ----CChhhh----Hhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 72 ----GGLIYC----MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 72 ----g~~~~~----~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
|.+..- .+... ++.++.||||+-+ ++++++||.|.+ +|....+.++.+.++.+-+ ++|+|.|
T Consensus 628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV 699 (1381)
T KOG0054|consen 628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV 699 (1381)
T ss_pred hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence 111000 11111 2245999999999 999999999999 9999999999888866644 4565554
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8.7e-12 Score=116.33 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=75.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec------cCC-cCCCCCCCcccChhhhh---------hHHHHHHHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDP-AAENFDYPVAMDIRELI---------SLEDVMEEL 66 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~------~d~-~~~~~~y~~~~~i~~~i---------~~~~~m~~~ 66 (268)
--++|+||||.|||||++.+.|-+.|+.|+..-+- .|- +++.+.. .-+..+++ .++..+-.|
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~--Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG--EETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc--ccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 35799999999999999999999999999754211 010 0111100 01112221 245555666
Q ss_pred CCCCCCChhhhHhhhhhh-HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 67 GLGPNGGLIYCMEHLEDN-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~-ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
||....-.+...+...++ -++++|..-+. .|++|||||||+ ||+.+...+. +-|+.+. | .||+|
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney~--G-gVi~V 757 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEYN--G-GVIMV 757 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhcc--C-cEEEE
Confidence 665432111111222222 22777765556 999999999999 9999986666 6555552 3 45555
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.31 E-value=5.7e-12 Score=108.07 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=62.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC-CCCCCceEEEeccCCc-CCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~-l~~~~G~v~i~~~d~~-~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.++|+||||||||||++++++. +.+..|... |+ ...+++... +...+...+. +... +..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-----~~~~~~i~~~dq--i~~~~~~~d~-----i~~~------~s~~ 92 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-----PAESASIPLVDR--IFTRIGAEDS-----ISDG------RSTF 92 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-----cccccccCCcCE--EEEEecCccc-----ccCC------ceeH
Confidence 6899999999999999999953 223333211 11 111222110 0000100000 0000 1111
Q ss_pred hhhH-HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~~~l-s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
...+ +...+.+... +|+++|+|||++ +|+..+..+.+.+++.+.+.+.+++++
T Consensus 93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 2222 1222223345 899999999999 999988887767788887666776555
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=2.2e-12 Score=109.36 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=66.0
Q ss_pred EEEEcCCCccHHHHHHHHH-cCCCCCCceEEEeccCCcC-CCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~-g~l~~~~G~v~i~~~d~~~-~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
++|.||||||||||+|.++ ..+.++.|... |+. -.+++.. +++..++...+... ....+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v-----~a~~~~~~~~d-----------~il~~~~~~d~~~~--~~s~fs 63 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFV-----PAESAELPVFD-----------RIFTRIGASDSLAQ--GLSTFM 63 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCe-----eehheEecccc-----------eEEEEeCCCCchhc--cccHHH
Confidence 6799999999999999998 33334444321 111 1111110 11122222221000 012333
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
..+ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus 64 ~~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 64 VEM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 333 44555555444899999999999 99998888877888888763 6665443
No 397
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.28 E-value=3e-11 Score=115.03 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.+|||+|.. +|++|+|||||+ ||+.+... +.+.+.+.
T Consensus 230 ~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~w-Lee~L~k~ 267 (614)
T KOG0927|consen 230 AALARALFQ--KPDLLLLDEPTNHLDLEAIVW-LEEYLAKY 267 (614)
T ss_pred HHHHHHHhc--CCCEEEecCCccCCCHHHHHH-HHHHHHhc
Confidence 999999999 999999999999 99998743 33554443
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.24 E-value=4.7e-11 Score=101.86 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=84.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC-------CCCC-----------------CcccChhhhhh--
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFDY-----------------PVAMDIRELIS-- 58 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~-------~~~y-----------------~~~~~i~~~i~-- 58 (268)
..++|.||||||||+|+++|-.-.-.|.|.+.|.+|..+ .+.| .-++++...+.
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 468999999999999999998777779999999988431 1222 11222222221
Q ss_pred -------HHHHHHHhCCCCCCChhhhHhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-
Q 024360 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK- 127 (268)
Q Consensus 59 -------~~~~m~~~~L~~~g~~~~~~~~~~~~l--s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~- 127 (268)
-+++++.+.+.-. ..|+.....+ ++.|+.-|.+ .=++++|||-|- ||..++...+ ++++.-.
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~----WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce 195 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLR----WRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECE 195 (291)
T ss_pred cCCChhHhhhhhhheeccce----EEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHh
Confidence 1222222222210 1123333222 2888888888 779999999999 9999998888 7777655
Q ss_pred hCCCeEEE-EEeccc
Q 024360 128 SRNFNVCA-VYLLDS 141 (268)
Q Consensus 128 ~~~~~ii~-v~l~d~ 141 (268)
++|.+|+. .|++|.
T Consensus 196 ~RgatIVYATHIFDG 210 (291)
T KOG2355|consen 196 QRGATIVYATHIFDG 210 (291)
T ss_pred hcCcEEEEEeeeccc
Confidence 45788774 466664
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.23 E-value=4.3e-11 Score=102.50 Aligned_cols=140 Identities=19% Similarity=0.290 Sum_probs=91.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC----CceEEEeccC-----CcC------CCCCC-Cc----ccChhhhhh----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLD-----PAA------ENFDY-PV----AMDIRELIS---- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~----~G~v~i~~~d-----~~~------~~~~y-~~----~~~i~~~i~---- 58 (268)
.+-|++|.+|||||-..|+|+|..+.. .-+..+.+.| |.. .+++. ++ .+|..+.+.
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 467999999999999999999987642 2223334433 211 11111 10 111111111
Q ss_pred ----------------------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-
Q 024360 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ- 109 (268)
Q Consensus 59 ----------------------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~- 109 (268)
+-+++.++|+...... |..++..+ .+.||.|++. +|.++|.||||+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI---M~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~ 188 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI---MRSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNS 188 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH---HHhCcchhccCcceeeeeehhhcc--CCceEeccCCCcc
Confidence 4567777788765333 34444433 2889999999 999999999999
Q ss_pred CCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccCHHHHHH
Q 024360 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 110 LD~~~~~~i~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
+|+.+..+++ +++.++++. |.+++. -+|.+...+..++
T Consensus 189 ~e~~Tq~Qif-RLLs~mNQn~~TtILL----~s~Dl~~is~W~d 227 (330)
T COG4170 189 MEPTTQAQIF-RLLSRLNQNSNTTILL----ISHDLQMISQWAD 227 (330)
T ss_pred cCccHHHHHH-HHHHHhhccCCceEEE----EcccHHHHHHHhh
Confidence 9999999999 999999865 555543 3566655555553
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.22 E-value=5.5e-11 Score=98.62 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=65.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
+++|+|||||||||+++.+....-...+.+... .+. ..++ .+...+. . +....++. ...
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~lS----------~G~ 82 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQLS----------GGE 82 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheeecc----------ccH
Confidence 689999999999999999877655444433331 110 0111 1111100 0 11111111 111
Q ss_pred hhHHHHHHHHHhcCC--CCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 83 DNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~--~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+. ..+++++.... +|+++|+|||+. +|+..+..+. ..+.++.+++.+++++
T Consensus 83 ~~~-~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~ 137 (162)
T cd03227 83 KEL-SALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI 137 (162)
T ss_pred HHH-HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 222 77788887522 689999999999 9999998888 5555554446666544
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.21 E-value=6.7e-11 Score=99.83 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=39.2
Q ss_pred HHHHHHHhc--CCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~--~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
..++++++. ..+|+++|+|||++ +|+..+..+. ++++.+.+.+.+++++
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii 154 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI 154 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 788888752 12899999999999 9999998888 7888876656666655
No 402
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=4.4e-11 Score=103.70 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=61.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc--CCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g--~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
-.++|.||||||||||+|.+.. ++ +..|...... . -.++|.... +. .++........+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~---~~~~~~d~i-----------~~--~l~~~~si~~~~S~ 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S---ATIGLVDKI-----------FT--RMSSRESVSSGQSA 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C---cEEeeeeee-----------ee--eeCCccChhhccch
Confidence 3578999999999999999983 33 4455433211 0 112221100 00 00111000000122
Q ss_pred hhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 81 ~~~~ls-~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
+...++ +.++.+++. +|+++|+|||+. +|+.....+...+++.+.+.
T Consensus 92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 233331 455556666 999999999999 99987667765788888654
No 403
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.19 E-value=1.7e-10 Score=103.42 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=35.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
..++|+||||||||||++.++|.+.+..|++.+.|.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 357999999999999999999999999999999998763
No 404
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=5.9e-11 Score=102.30 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=67.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccC-CcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLD-PAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
-+++|+|||||||||++++++++.- ..-| .- |+. .+.+++.+ +++..++...+... ....
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G------~~vpa~-----~~~l~~~d-----~I~~~~~~~d~~~~--~~S~ 91 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIG------CFVPAE-----YATLPIFN-----RLLSRLSNDDSMER--NLST 91 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcC------CCcchh-----hcCccChh-----heeEecCCccccch--hhhH
Confidence 3689999999999999999987631 0111 11 111 11223333 23444444432110 0222
Q ss_pred hhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 81 LEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 81 ~~~~ls-~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+...+. ...+.+++. +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 92 fs~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~ 147 (204)
T cd03282 92 FASEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA 147 (204)
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 233331 222223345 899999999999 999887777768899988777766544
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.16 E-value=3.2e-10 Score=121.93 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=42.3
Q ss_pred HHHHHHHh---cCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~---~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.||++|+ . +|+++|||||++ ||+..++.++ ++++++++.|.+++++
T Consensus 818 V~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TVIiI 868 (1809)
T PRK00635 818 LKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTVVII 868 (1809)
T ss_pred HHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 89999997 5 899999999999 9999999988 9999998778887766
No 406
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=1.7e-10 Score=99.99 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CC-eEEEE
Q 024360 91 EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF-NVCAV 136 (268)
Q Consensus 91 ~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~-~ii~v 136 (268)
++++. +|+++|+|||++ +|+..+..++ +++..+.++ |. +++++
T Consensus 143 ~~~~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii 188 (213)
T cd03277 143 LQELT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI 188 (213)
T ss_pred HHhcc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence 34456 999999999999 9999999988 888777654 43 45544
No 407
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=4.8e-10 Score=115.14 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHHHhcC-CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~-~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.||++|+.- .+|+++|||||++ ||+..+..++ ++++++.+.|.+++++
T Consensus 837 l~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 837 IKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 8899999861 1489999999999 9999998888 8899987778887666
No 408
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=2.3e-10 Score=98.68 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCEEEEeCCC-----c-CCHHhHHHHHHHHHHHHHh
Q 024360 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~-----~-LD~~~~~~i~~~ll~~l~~ 128 (268)
.+||+++.. +|+++++|||+ + ||+..++.+. ++++.+++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 799999999 99999999999 9 9999999988 88888864
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.12 E-value=6.5e-10 Score=114.42 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCC---CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 86 DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 86 s~~la~al~~~~~p---~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++.||++|+. +| +++|||||++ ||+..+..++ ++++++.+.|.+++++
T Consensus 838 Rl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TVIii 889 (943)
T PRK00349 838 RVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 3899999999 88 9999999999 9999999988 8899987778887766
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.1e-10 Score=106.85 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=79.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCc-------ccCh--hhhh----------hHHHHHHH
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-------AMDI--RELI----------SLEDVMEE 65 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~-------~~~i--~~~i----------~~~~~m~~ 65 (268)
++++|+||+||||+++++.+-++|.+|.+.+.+. ..+.|+. +..+ -+.. .++.-+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4789999999999999999999999997766532 2233311 0111 0111 15556677
Q ss_pred hCCCCCCChhhhHhhhhhhHH--HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 66 ~~L~~~g~~~~~~~~~~~~ls--~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+|+....+... +..+.+.+. +++|.+... +|.+|+|||||+ ||..+...+. +.++.-+..||+|
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~V 535 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLV 535 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEE
Confidence 88876544332 333333322 788877778 999999999999 9998875444 4454434456666
No 411
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.08 E-value=7.1e-10 Score=96.39 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=59.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccCCcCCCCCC----CcccChhhhhhHHHHHHHhCCCCCCChhhhH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d~~~~~~~y----~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~ 78 (268)
+++|+|||||||||+++.+++..- ...|.. .......+++ .+.+++++.+. .+ .
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g--------~ 90 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLA---------GG--------R 90 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhc---------cC--------c
Confidence 578999999999999999986431 112211 0011112222 12223332221 00 1
Q ss_pred hhhhhhHHHHHHHHHhcCCCCCEEEEeCC---Cc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 79 ~~~~~~ls~~la~al~~~~~p~~lilDEP---~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
..+...+ ..++.++....+|+++|+||| |+ +|... ..+.+++.+.+. +.+++++
T Consensus 91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHHHHHhccCCcEEEE
Confidence 2223333 445555543338999999999 77 88754 333667777655 6666544
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=4e-10 Score=98.32 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=63.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC-CCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l-~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
+++|.||||||||||++.++-.. -...|- .-|+.. . .+. .+++++..+++.+.. ...+..+.
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-~----~~~-----~~~~il~~~~l~d~~--~~~lS~~~ 94 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-A----DIP-----IVDCILARVGASDSQ--LKGVSTFM 94 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-E----EEe-----ccceeEeeeccccch--hcCcChHH
Confidence 68999999999999999987320 001110 001110 0 011 123455556655432 11123333
Q ss_pred hhHHHHHHHHH--hcCCCCCEEEEeCC---Cc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al--~~~~~p~~lilDEP---~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
.++ ..+++++ +. +|+++|+||| |+ +|...... .+++.+.+ .+.+++++
T Consensus 95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis 149 (222)
T cd03285 95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA 149 (222)
T ss_pred HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence 444 6677777 55 9999999999 88 99887643 44566654 35565433
No 413
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.04 E-value=5.6e-10 Score=113.13 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=68.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC-CCCCCceEEEeccCCcCC--CCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~-l~~~~G~v~i~~~d~~~~--~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~ 79 (268)
-.++|.||||+|||||+|+++|. +.+..|-.. |+.. .++|...+ .. .+++.......+.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~V-----pa~~~~~~~~~d~i--~~-----------~i~~~~si~~~LS 384 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPI-----PANEHSEIPYFEEI--FA-----------DIGDEQSIEQNLS 384 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCc-----cCCccccccchhhe--ee-----------ecChHhHHhhhhh
Confidence 36799999999999999999998 455555211 2221 12221100 00 1111100111122
Q ss_pred hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 80 ~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+...+ ..++..+....+|+++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus 385 tfS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 385 TFSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 333333 22333333223899999999999 999999888668899987767666544
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.03 E-value=1.9e-09 Score=100.40 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=90.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--------CCCCceEEEeccCCcCC-CCCCCc---ccChhhhhh--------HHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPAAE-NFDYPV---AMDIRELIS--------LEDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--------~~~~G~v~i~~~d~~~~-~~~y~~---~~~i~~~i~--------~~~~ 62 (268)
-+++|+|++||||||+++++.|.. +|++|.|.+--...+.- .-.+.+ ..++-+++. ..++
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveI 489 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI 489 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHHH
Confidence 468999999999999999999964 78899988743222110 011222 223444432 5678
Q ss_pred HHHhCCCCCCChhhhHhhhhhhH--HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 024360 63 MEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (268)
Q Consensus 63 m~~~~L~~~g~~~~~~~~~~~~l--s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~~~~~ii~v~ 137 (268)
+...|++.----......+...+ +..||.+++. .|.+++.||=.+ ||..+...+. .-+..++ +.+.|+++++
T Consensus 490 LnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivvT 565 (593)
T COG2401 490 LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVVT 565 (593)
T ss_pred HHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEEe
Confidence 88888876422222223333222 2789999999 999999999999 9999999998 4455665 4588877663
No 415
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=8.9e-10 Score=96.16 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=68.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g-~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
+++|.||||+||||+++++++ .+.++.|...... . -.++|...+ .-.+...+ .+..+ ...+.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i--~~~~~~~d-----~~~~~------~StF~ 95 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV--LTRMGASD-----SIQHG------MSTFM 95 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE--EEEecCcc-----ccccc------cchHH
Confidence 578999999999999999999 6677888654221 1 112222111 00000000 01111 23444
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
..+ ..++..+....+++++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus 96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 444 44555555444899999999988 87666666655888888765 5555544
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.99 E-value=1.3e-09 Score=101.74 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=78.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-eEEEeccCCcCCCCCCCcccChhhhhh------------HHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~v~i~~~d~~~~~~~y~~~~~i~~~i~------------~~~~m~~~~L~ 69 (268)
.++..+|.||.|||||+++++|.++|+.| ++-..|.....+.+.-...-++|..+. +.++|+-+.+.
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 46788999999999999999999999876 443333322222221111234554432 55666665544
Q ss_pred CCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH-HhCCCe
Q 024360 70 PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL-KSRNFN 132 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l-~~~~~~ 132 (268)
.- ++.-+++ ++++++.++.. .+++++.|||.+ +|...+.... ..++++ -+..++
T Consensus 448 ~i------~dqevq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkt 509 (592)
T KOG0063|consen 448 NI------IDQEVQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKT 509 (592)
T ss_pred HH------HhHHhhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccch
Confidence 32 3333333 34888888888 899999999999 9999887776 555554 333344
No 417
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.96 E-value=4.4e-09 Score=101.17 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=79.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-Cc----CCCCCCCcccChhhhh-----------------hHHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA----AENFDYPVAMDIRELI-----------------SLED 61 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~----~~~~~y~~~~~i~~~i-----------------~~~~ 61 (268)
-+.|.||||||||+|+++++|+-+..+|++..-... |. ...-||.+.=|.|+.+ .+.+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 367999999999999999999998888887642211 00 0111222211233322 2555
Q ss_pred HHHHhCCCCC----CChh-----hhHh--hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC
Q 024360 62 VMEELGLGPN----GGLI-----YCME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (268)
Q Consensus 62 ~m~~~~L~~~----g~~~-----~~~~--~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~ 129 (268)
.++.++|++- |+.- .=++ ...++++.++||-+.+ +|++-||||-|+ ++...-..+. + .+++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r---~~r~~ 616 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-R---KCREM 616 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-H---HHHHc
Confidence 6666666541 1111 0011 1224456899999999 999999999999 9988765544 3 34556
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
|+|.+.|
T Consensus 617 giT~iSV 623 (659)
T KOG0060|consen 617 GITFISV 623 (659)
T ss_pred CCeEEEe
Confidence 8888766
No 418
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.89 E-value=8.9e-09 Score=83.31 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=66.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhh---Hhhh
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEHL 81 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~---~~~~ 81 (268)
++|.||||+||||+++.+++...+..+.+.+.+.+..... ..... ..+...+...+...... ....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 70 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPAA 70 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCcH
Confidence 6899999999999999999998888888888776532211 11100 00111110000000000 0000
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY 137 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~---------~~~i~~~ll~~l~~~~~~ii~v~ 137 (268)
......+.+.+... +|+++++|||+. ++... ....+..+....++.+.+++++.
T Consensus 71 ~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 71 ARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 00011334445555 899999999997 54422 12344366666655677777663
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.87 E-value=1.7e-08 Score=87.32 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhhhhHH-H--HHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD-D--WLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~~~ls-~--~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
+.+.+...++.+. ....++.+ . ++..|+....+.+++|||||.+ ||...+..+. .+++.+.+. .-++
T Consensus 123 ~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~~-~Q~i 193 (220)
T PF02463_consen 123 LEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSKQ-SQFI 193 (220)
T ss_dssp HHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTTT-SEEE
T ss_pred ccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc-cccc
Confidence 4556666666665 12222222 2 2222344444779999999999 9999998888 888888643 4555
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
++
T Consensus 194 i~ 195 (220)
T PF02463_consen 194 IT 195 (220)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 420
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.87 E-value=2.5e-07 Score=74.78 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=38.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhh-hcCCeeeEEeeccChhhHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~-~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
.+.|.+-|.||+|++... .... .... +...+. ......++|+|+.++.++.++..
T Consensus 109 ~~~~vi~v~nK~D~~~~~-~~~~-------------------~~~~----~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 109 LGIPFLVVLTKADKLKKS-ELAK-------------------ALKE----IKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred cCCCEEEEEEchhcCChH-HHHH-------------------HHHH----HHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 468988899999996543 1110 0011 111122 22336788999999999999999
Q ss_pred HHHHh
Q 024360 243 QIDNC 247 (268)
Q Consensus 243 ~id~~ 247 (268)
.|.+.
T Consensus 165 ~l~~~ 169 (170)
T cd01876 165 LIEKW 169 (170)
T ss_pred HHHHh
Confidence 98764
No 421
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.87 E-value=1.1e-07 Score=85.09 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCcCCHHh--HHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 98 DDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~--~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
+.+++++|.||..+... .+.+.+.....+. +..+ +++++|+........++-. ..-..+.|.+-|+||+
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~--~aDv-vl~VvD~~~~~~~~~~i~~------~l~~~~~p~ilV~NK~ 117 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG--GVDL-ILFVVDSDQWNGDGEFVLT------KLQNLKRPVVLTRNKL 117 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh--hCCE-EEEEEECCCCCchHHHHHH------HHHhcCCCEEEEEECe
Confidence 44689999999854422 1112212222232 2223 4456776554333222211 1123578999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhccc
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 252 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~e 252 (268)
|+..+. .+. +.. . .+++ .++.-.++|+|+.+++++++++..+.+....++
T Consensus 118 Dl~~~~-~~~-----------~~~--------~----~~~~---~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 118 DNKFKD-KLL-----------PLI--------D----KYAI---LEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred eCCCHH-HHH-----------HHH--------H----HHHh---hcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 996432 110 001 1 1111 112236899999999999999999988876554
No 422
>PRK00089 era GTPase Era; Reviewed
Probab=98.86 E-value=3.1e-07 Score=82.97 Aligned_cols=120 Identities=22% Similarity=0.354 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCcCCHHhH--HHHHHHHHHHHHhCCCeEEEEEeccccc-ccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQIELFTH--VPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~--~~i~~~ll~~l~~~~~~ii~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
+.+++++|.||..++... ..+.......+.. .-+ +++++|+.. +.+....+-.. .-..+.|.+-|+||
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~--~D~-il~vvd~~~~~~~~~~~i~~~------l~~~~~pvilVlNK 122 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD--VDL-VLFVVDADEKIGPGDEFILEK------LKKVKTPVILVLNK 122 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhc--CCE-EEEEEeCCCCCChhHHHHHHH------HhhcCCCEEEEEEC
Confidence 457999999998544321 1112122222222 222 334566654 33222222111 11346899999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhccc
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 252 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~e 252 (268)
+|+......+.. . + . .+. +.++...++|+|+.+++++..++..+-+....++
T Consensus 123 iDl~~~~~~l~~--------~---~--------~----~l~---~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 123 IDLVKDKEELLP--------L---L--------E----ELS---ELMDFAEIVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CcCCCCHHHHHH--------H---H--------H----HHH---hhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999743211110 0 0 1 111 1234467899999999999999999988775544
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.1e-09 Score=98.69 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~ 143 (268)
+.|||||.. +|-+|.|||||+ ||+.....+- +.++.+ ..|+++|. +|-.|
T Consensus 421 vSLARALfl--EPTLLMLDEPTNHLDLNAVIWLd-NYLQgW---kKTLLIVS-HDQgF 471 (807)
T KOG0066|consen 421 VSLARALFL--EPTLLMLDEPTNHLDLNAVIWLD-NYLQGW---KKTLLIVS-HDQGF 471 (807)
T ss_pred hhHHHHHhc--CceeeeecCCccccccceeeehh-hHHhhh---hheeEEEe-cccch
Confidence 899999999 999999999999 9998763322 544444 45665552 44444
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.84 E-value=6.4e-09 Score=91.22 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCc-C----CHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 024360 98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (268)
Q Consensus 98 ~p~~lilDEP~~-L----D~~~~~~i~~~ll~~l~~~~~~ii~v~ 137 (268)
+|+++++|||++ + |+...+.+. ++++.+++.|.+++++|
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~ 160 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTA 160 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 799999999999 7 666666776 78888877677666554
No 425
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.84 E-value=4.5e-07 Score=72.95 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc-cCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 98 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
+.++.++|.||.-+.... ............. +.. ++++++|+... .+....+.. .....+.|.+-|+||+
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-~~d-~i~~v~d~~~~~~~~~~~~~~------~~~~~~~~~iiv~nK~ 121 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALK-DVD-LVLFVVDASEPIGEGDEFILE------LLKKSKTPVILVLNKI 121 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHH-hCC-EEEEEEECCCccCchHHHHHH------HHHHhCCCEEEEEEch
Confidence 357899999998443332 1211122222212 122 23345665543 333222221 1223478999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
|+......+..+. ..+. ..+....++++|..+++++..++..|.+.
T Consensus 122 Dl~~~~~~~~~~~-----------------------~~~~---~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 122 DLVKDKEDLLPLL-----------------------EKLK---ELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred hccccHHHHHHHH-----------------------HHHH---hccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 9964221111100 0111 11224568899999999999999998754
No 426
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.84 E-value=4.7e-08 Score=80.40 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred CCEEEEeCCCcCCHHh-HHHHHHHHHHHHHhCCCeEEEEEeccccccc-----CHHHHHHHHHHHHHHHH-------hhc
Q 024360 99 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DVTKFISGCMASLSAMV-------QLE 165 (268)
Q Consensus 99 p~~lilDEP~~LD~~~-~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~-----d~~~~~s~~l~~~~~~~-------~~~ 165 (268)
.++.+.|.||..+-.. .+.+.+.+...+.. .. ++++++|+.... ++..-...+........ ...
T Consensus 44 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~--~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 44 ARIQVADIPGLIEGASEGRGLGNQFLAHIRR--AD-AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CeEEEEeccccchhhhcCCCccHHHHHHHhc--cC-EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 3578999999843222 12222233333332 22 244456665442 22222222222222111 257
Q ss_pred CCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHH
Q 024360 166 LPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 245 (268)
Q Consensus 166 ~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id 245 (268)
.|.+-|+||+|+.... ....+. ........-..++++|+.++.++..++..+-
T Consensus 121 ~p~ivv~NK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 121 KPVIYVLNKIDLDDAE-ELEEEL--------------------------VRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred CCeEEEEEchhcCchh-HHHHHH--------------------------HHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 8999999999997544 111100 0001111225689999999999999988763
No 427
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.84 E-value=1e-08 Score=84.74 Aligned_cols=152 Identities=22% Similarity=0.291 Sum_probs=90.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhhhh
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 84 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~~~ 84 (268)
++++|.+-+|||||++.|+|.. ..+.|. | ..|+.- ..+.
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~------~~v~n~-p---------G~Tv~~-------------------------~~g~ 41 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAK------QKVGNW-P---------GTTVEK-------------------------KEGI 41 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS------EEEEES-T---------TSSSEE-------------------------EEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCC------ceecCC-C---------CCCeee-------------------------eeEE
Confidence 7899999999999999999963 333332 1 122211 0000
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHH
Q 024360 85 LDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (268)
Q Consensus 85 ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (268)
+ .+.+.++.+.|-||. +...+..+.+ -.+.+.... .=++++++|+..+. +-+.......
T Consensus 42 ~---------~~~~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~-~D~ii~VvDa~~l~-------r~l~l~~ql~ 102 (156)
T PF02421_consen 42 F---------KLGDQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEK-PDLIIVVVDATNLE-------RNLYLTLQLL 102 (156)
T ss_dssp E---------EETTEEEEEEE----SSSSSSSHHHHH--HHHHHHHTS-SSEEEEEEEGGGHH-------HHHHHHHHHH
T ss_pred E---------EecCceEEEEECCCcccCCCCCcHHHH--HHHHHhhcC-CCEEEEECCCCCHH-------HHHHHHHHHH
Confidence 0 011567999999995 7666643322 122232333 33456678887753 2233444556
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
.++.|.+-|+||+|.+++.+ +.. +. .+|.+. +. +.++|+++.++++++++..
T Consensus 103 e~g~P~vvvlN~~D~a~~~g-~~i----d~---------------~~Ls~~----Lg----~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 103 ELGIPVVVVLNKMDEAERKG-IEI----DA---------------EKLSER----LG----VPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HTTSSEEEEEETHHHHHHTT-EEE-----H---------------HHHHHH----HT----S-EEEEBTTTTBTHHHHHH
T ss_pred HcCCCEEEEEeCHHHHHHcC-CEE----CH---------------HHHHHH----hC----CCEEEEEeCCCcCHHHHHh
Confidence 78999999999999987663 210 11 122222 21 6799999999999999998
Q ss_pred HH
Q 024360 243 QI 244 (268)
Q Consensus 243 ~i 244 (268)
+|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 76
No 428
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.84 E-value=1.2e-07 Score=77.63 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=63.2
Q ss_pred CEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHH--hhcCCeeEeecccc
Q 024360 100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD 176 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~--~~~~p~i~vlsk~d 176 (268)
.+.+.|.||..+.... +.+.+..++.+.... ++++++|+....++..-+..+.-...... ..+.|.+-|+||+|
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d---~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTR---LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCC---EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 6889999997432211 122334444443222 24445666543123333333332222221 13689999999999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
+..+. ....+ + .. .........++++|+.+..++.+++..+-+.
T Consensus 126 l~~~~-~~~~~-----------~--------~~-------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 126 LLDEE-ELFEL-----------L--------KE-------LLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred cCCch-hhHHH-----------H--------HH-------HHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 86543 11100 0 00 1111112458899999999999999887643
No 429
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.82 E-value=6e-07 Score=75.56 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCEEEEeCCCc-CC---HHhHHHHHHHHHHH-HHhCCCeEEEEEeccccc-ccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 99 DDYLVFDCPGQ-IE---LFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 99 p~~lilDEP~~-LD---~~~~~~i~~~ll~~-l~~~~~~ii~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
.++.|+|.||. .. ...+.... .++.. +.......++++++|+.. ..+...-+... +-..+.|.+.++
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~------l~~~~~~~iiv~ 142 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQ-KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEW------LKEYGIPVLIVL 142 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHH-HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHH------HHHcCCcEEEEE
Confidence 46899999995 32 11222222 33333 332222223445556443 22211111111 123578988899
Q ss_pred ccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 173 sk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
||+|+++.. ..+. ....+.+.+..+ ...++|+|+.+++++.+++..|-+...
T Consensus 143 nK~Dl~~~~-~~~~-----------------------~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 143 TKADKLKKG-ERKK-----------------------QLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ECcccCCHH-HHHH-----------------------HHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999997543 1110 011122223322 256889999999999999999977654
No 430
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.81 E-value=7.1e-08 Score=82.61 Aligned_cols=102 Identities=24% Similarity=0.264 Sum_probs=59.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.++|.||+||||||+++.+.+.+.+. .|.|...+.++ + ...... +..+ .....+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~--E-~~~~~~---~~~i------~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI--E-FVHESK---RSLI------NQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc--c-ccccCc---ccee------eecccCCC----------c
Confidence 57899999999999999999888754 56766655432 1 111100 0000 11111111 1
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
..+..++++++.. +|+++++|||.. ... +...++ ....|+.++.+
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEird--~e~----~~~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMRD--LET----IRLALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCCC--HHH----HHHHHH-HHHcCCEEEEE
Confidence 2244678888888 999999999963 332 213333 33456665443
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.80 E-value=1.5e-07 Score=86.42 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+.+++++|||||||||++..|++++.+.+++|.+.+.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 3689999999999999999999999998899999998873
No 432
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.80 E-value=6.9e-08 Score=76.65 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
..++.++|.|+.-+..............+... ... +++++|+.......... ..........|.+-|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 45799999999844433322211233333332 222 23345554433222221 222334568899999999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
.... ...... . ........+....++++|+.+.+++..++..+.+.
T Consensus 117 ~~~~-~~~~~~--------~---------------~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 117 LPEE-EEEELL--------E---------------LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CChh-hHHHHH--------H---------------HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 7543 111000 0 11111223344678999999999999999988764
No 433
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.79 E-value=9.2e-08 Score=80.76 Aligned_cols=125 Identities=15% Similarity=0.255 Sum_probs=69.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC--CCceEEEec-cCCcC----CCCCC-----Cc---ccChhhhhh----HHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPAA----ENFDY-----PV---AMDIRELIS----LEDVM 63 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~--~~G~v~i~~-~d~~~----~~~~y-----~~---~~~i~~~i~----~~~~m 63 (268)
-|+.|+|.||||||||+-+|+--... .+|.=-+.+ .|+.. .++.+ ++ .+.-..... ++++.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 37889999999999999998755432 222111110 11110 00000 00 111112222 45555
Q ss_pred HHhCCCCCCChhhhHhhhhhhHH--HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 64 ~~~~L~~~g~~~~~~~~~~~~ls--~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+-+.+++. ++.....=+ ..+.+.+ + +.-++|||||-+ |.+..+-+++ .+++.+.+.|..+|++
T Consensus 118 ~e~~~~~~s-----Lh~~SHGEsf~~i~~~rf-~--~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA 184 (233)
T COG3910 118 GEANYGGRS-----LHHMSHGESFLAIFHNRF-N--GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA 184 (233)
T ss_pred hhcccCCcc-----hhhhccchHHHHHHHHHh-c--cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence 555544432 222222211 2233332 2 567999999999 9999988888 9999999888777655
No 434
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.79 E-value=1.1e-08 Score=97.51 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=71.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEE--------eccCC------cCCCCCCCcccChhhhhh-------HHHHH
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHI--------VNLDP------AAENFDYPVAMDIRELIS-------LEDVM 63 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i--------~~~d~------~~~~~~y~~~~~i~~~i~-------~~~~m 63 (268)
+.|+||||||||+|++++.|+-+...|...+ .-+.| .++.+-||. ++.+... +..++
T Consensus 511 LLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPd--S~e~~~~kg~~d~dL~~iL 588 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPD--SSEQMKRKGYTDQDLEAIL 588 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCC--cHHHHHhcCCCHHHHHHHH
Confidence 5799999999999999999998877775543 11211 012222221 1111110 23333
Q ss_pred HHhCCCC-------CCChhhhHhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 64 EELGLGP-------NGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 64 ~~~~L~~-------~g~~~~~~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
..+.|.. ..+...-.+.+. ++++..+||.+-+ +|+|-+|||-|+ +.+.....+. +..+..|.++
T Consensus 589 ~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~gi~l 662 (728)
T KOG0064|consen 589 DIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAGISL 662 (728)
T ss_pred HHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcCceE
Confidence 3333221 000000012222 3355889999999 999999999999 7776654444 3344458887
Q ss_pred EEE
Q 024360 134 CAV 136 (268)
Q Consensus 134 i~v 136 (268)
+.|
T Consensus 663 lsi 665 (728)
T KOG0064|consen 663 LSI 665 (728)
T ss_pred EEe
Confidence 765
No 435
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.79 E-value=1.2e-07 Score=87.35 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~ 43 (268)
+++++|.||+|||||||+..+...+...+.+|.+.+.||...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 478999999999999999999999987778999999999653
No 436
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.74 E-value=8.4e-08 Score=91.00 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=97.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC-cC--------CCCCCC----------cccChhhhhh-----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDYP----------VAMDIRELIS----- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~-~~--------~~~~y~----------~~~~i~~~i~----- 58 (268)
.|+||.|-.|-|-+.|+.+|+|+.++.+|+|.+.|.|. .. ..+.|- +++++.+|+-
T Consensus 285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 58999999999999999999999998889999999885 11 123331 2445555432
Q ss_pred ------------------HHHHHHHhCCCCCCChhhhHhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 ------------------~~~~m~~~~L~~~g~~~~~~~~~~~~l-s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
..+++++|++.+.+-.........+|+ ++.+||.+.. +|++||+-.||. ||.-+...+
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~I 442 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEFI 442 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHHH
Confidence 678889998875442222223333333 3889999999 999999999999 999998887
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. +.+...++.|..|+++
T Consensus 443 ~-~~l~e~r~~G~AVLLi 459 (501)
T COG3845 443 H-ERLLELRDAGKAVLLI 459 (501)
T ss_pred H-HHHHHHHhcCCEEEEE
Confidence 7 5566666778888766
No 437
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.73 E-value=5.6e-07 Score=77.17 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.1
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+.++++|+.+++++.+++..+.+..
T Consensus 174 ~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 174 APIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999997644
No 438
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.72 E-value=3e-09 Score=91.31 Aligned_cols=122 Identities=25% Similarity=0.315 Sum_probs=86.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCChhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y-----~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~ 77 (268)
+-++++|+.|||||||++.+.+...+......+.+..++.....+ .+.+|++....++.++..+..++++.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 678999999999999999999998887776666666665544444 456778888888899999999998866532
Q ss_pred Hhhhhhh----HHHHHHHHHhcCCC-CCEEEEeCCCcCCHHhHHHHHHHHHHHH
Q 024360 78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (268)
Q Consensus 78 ~~~~~~~----ls~~la~al~~~~~-p~~lilDEP~~LD~~~~~~i~~~ll~~l 126 (268)
-...... ...|+...... . +.+.+++-|.+.|.+.++.....+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhh
Confidence 2222111 11444333333 3 4799999999999999877774544444
No 439
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=4.4e-07 Score=82.65 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
+.+++|+||+|||||||+..+.+.+...+.+|.+.+.||..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 46789999999999999999999988888899999998743
No 440
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.5e-08 Score=89.62 Aligned_cols=48 Identities=19% Similarity=-0.018 Sum_probs=36.0
Q ss_pred HHHHHHHhcC--CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~--~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+.+|++++.. .+|+++|+|||++ +|+.....+. ++++.+.+ +.+++++
T Consensus 179 ~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i 229 (276)
T cd03241 179 LMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI 229 (276)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 5666544321 2899999999999 9999998888 77887754 5666555
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.70 E-value=2.1e-08 Score=84.08 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCc-CC---HHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 98 ~p~~lilDEP~~-LD---~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+|+++++|+|++ +| ...+..+. ++++.+++.|.+++++
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v 136 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLT 136 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 899999999999 88 55555554 7888888778877666
No 442
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.70 E-value=1.8e-07 Score=75.87 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=37.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .. .... ... + ..+++ +.+++.|+.+++++.+++..
T Consensus 104 ~~~piiiv~NK~D~~~~~-~~------~~~~------------~~~----~---~~~~~-~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 104 DNVPLLLVGNKCDLEDKR-QV------SSEE------------AAN----L---ARQWG-VPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred CCCCEEEEEEcccccccc-cc------CHHH------------HHH----H---HHHhC-CeEEEeeCCCCCCHHHHHHH
Confidence 578999999999996522 00 0000 001 1 11222 46899999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
+-+..
T Consensus 157 l~~~~ 161 (164)
T cd04139 157 LVREI 161 (164)
T ss_pred HHHHH
Confidence 86543
No 443
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.70 E-value=1.3e-06 Score=71.94 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+||+|||||||++.+.|.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 56899999999999999999885
No 444
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.69 E-value=2.3e-07 Score=75.86 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHH-HHHHHhhcCCeeEeecccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMD 176 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~-~~~~~~~~~p~i~vlsk~d 176 (268)
+.++.+.|.||+-+... +.....+ +.. ++++++|+.......... ..+.. .......+.|.+-|+||+|
T Consensus 49 ~~~~~l~Dt~G~~~~~~-------~~~~~~~-~~~-~~v~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D 118 (167)
T cd04160 49 NARLKFWDLGGQESLRS-------LWDKYYA-ECH-AIIYVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQD 118 (167)
T ss_pred CEEEEEEECCCChhhHH-------HHHHHhC-CCC-EEEEEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccc
Confidence 45789999999843222 1112222 222 234456654422111111 11111 1111234789999999999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHH
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 245 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id 245 (268)
+.... ........+... . +-+ ...-++++++|+.+++++.+++..|-
T Consensus 119 ~~~~~---------~~~~~~~~~~~~-----~-------~~~-~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 119 LPDAL---------SVEEIKEVFQDK-----A-------EEI-GRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cccCC---------CHHHHHHHhccc-----c-------ccc-cCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 85432 111110111100 0 001 11226899999999999999998774
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.69 E-value=1.2e-07 Score=86.63 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=59.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
..++|.||+|||||||++++++++++..|.+.+. |+..-.+..+....+ . . .. ...+ ...
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l---~-~----~~---~~~~-------~~~ 204 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHL---F-Y----SK---GGQG-------LAK 204 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEE---E-e----cC---CCCC-------cCc
Confidence 4689999999999999999999999988877764 221111111100000 0 0 00 0000 001
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCe
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
-.+...+..++.. +|+++++|||.. .+.+ .+++.+. .|+.
T Consensus 205 ~~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~~ 244 (308)
T TIGR02788 205 VTPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGHP 244 (308)
T ss_pred cCHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCCC
Confidence 1122556667777 999999999996 2344 6677765 3443
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.68 E-value=5.4e-08 Score=99.02 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=64.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC-CCCCCceEEEeccCCcCC--CCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~-l~~~~G~v~i~~~d~~~~--~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
+++|.|||++||||++|.++.. +-+..|-. -|+.+ .+++.. .+ +. .++....+......
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~~--~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----FA--DIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----EE--ecCCccchhhchhH
Confidence 5789999999999999998654 12222210 02221 122211 11 00 11111111111223
Q ss_pred hhhhHH--HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 81 ~~~~ls--~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+...+. ..+++++ . +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 333331 3344443 4 899999999999 999998888767888887767666544
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=4.6e-08 Score=85.19 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=64.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccCCcCC-CCCCCc----ccChhhhhhHHHHHHHhCCCCCCChhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAAE-NFDYPV----AMDIRELISLEDVMEELGLGPNGGLIYC 77 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d~~~~-~~~y~~----~~~i~~~i~~~~~m~~~~L~~~g~~~~~ 77 (268)
+++|.||||+||||+++.+++..- .+.|-. -|+.. .+++.. .+...+.+ ...
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-----vpa~~~~i~~~~~i~~~~~~~d~~-----------~~~------ 89 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-----VPAKSMRLSLVDRIFTRIGARDDI-----------MKG------ 89 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCCc-----cCccccEeccccEEEEecCccccc-----------ccC------
Confidence 678999999999999999988632 111210 01111 111100 01111111 011
Q ss_pred HhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 78 ~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
...+...+ ..+++.+....+|+++|+|||+. .++.....+.+.+++.+.+. +.+++++
T Consensus 90 ~StF~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 90 ESTFMVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred cchHHHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 12333334 44444444334899999999999 99999888887778888764 6666544
No 448
>PRK13695 putative NTPase; Provisional
Probab=98.68 E-value=1.8e-08 Score=84.32 Aligned_cols=122 Identities=17% Similarity=0.260 Sum_probs=59.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCCCcccChhhhh-hHHHHHHHhCC-CCC--CCh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDYPVAMDIRELI-SLEDVMEELGL-GPN--GGL 74 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y~~~~~i~~~i-~~~~~m~~~~L-~~~--g~~ 74 (268)
-++|+|+||||||||++.+.+.+.+ .| +.+.|.-.. .....+ ++.+.. .....+...+. +.. +..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 4789999999999999999887654 34 222222110 011111 111100 00011112221 111 000
Q ss_pred hhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 75 ~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
...++- ...+...+++.... +|+++++|||+.++.... ... +.+..+.+.+.+++++
T Consensus 76 ~~~lsg-le~~~~~l~~~~l~--~~~~lllDE~~~~e~~~~-~~~-~~l~~~~~~~~~~i~v 132 (174)
T PRK13695 76 VVNLED-LERIGIPALERALE--EADVIIIDEIGKMELKSP-KFV-KAVEEVLDSEKPVIAT 132 (174)
T ss_pred EEehHH-HHHHHHHHHHhccC--CCCEEEEECCCcchhhhH-HHH-HHHHHHHhCCCeEEEE
Confidence 000000 11111333444445 899999999877666553 344 5666665667776655
No 449
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.67 E-value=3.4e-07 Score=91.33 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE-Eeccccc
Q 024360 85 LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLDSQF 143 (268)
Q Consensus 85 ls~~la~al~~~-~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v-~l~d~~~ 143 (268)
+++.||..|..- +..-++||||||. |-..-.+.++ +.+.+|...|.|||+| |-+|..-
T Consensus 829 QRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 829 QRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceEe
Confidence 348889988862 1337999999999 9999999999 9999999889998877 5444433
No 450
>PRK09866 hypothetical protein; Provisional
Probab=98.66 E-value=3.8e-06 Score=82.77 Aligned_cols=120 Identities=10% Similarity=0.114 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc-cCHHHHHHHHHHHHHHHHhhc--CCeeEeecc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLE--LPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~--~p~i~vlsk 174 (268)
+..++++|.||--.+... .+-+.+.+.+.... ++++++|.... ......+... +-..+ .|.+-|+||
T Consensus 229 ~~QIIFVDTPGIhk~~~~-~L~k~M~eqL~eAD---vVLFVVDat~~~s~~DeeIlk~------Lkk~~K~~PVILVVNK 298 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQP-HLQKMLNQQLARAS---AVLAVLDYTQLKSISDEEVREA------ILAVGQSVPLYVLVNK 298 (741)
T ss_pred cCCEEEEECCCCCCccch-HHHHHHHHHHhhCC---EEEEEEeCCCCCChhHHHHHHH------HHhcCCCCCEEEEEEc
Confidence 578999999998443222 12212334454333 34556776542 2222222111 11233 499999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhh--hcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~--~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+|+..+... +.+.+. ..+...+. .+.....+|+|+..+.++..++..|-+...
T Consensus 299 IDl~dreed-------dkE~Ll---------------e~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 299 FDQQDRNSD-------DADQVR---------------ALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred ccCCCcccc-------hHHHHH---------------HHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 998643310 111110 11111111 122357899999999999999999887543
No 451
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.65 E-value=2.1e-07 Score=100.63 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 85 LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 85 ls~~la~al~~~-~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+++.||..|..- ..+.++||||||. |++...+.++ .++++|...|.|+++|
T Consensus 1706 qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1706 IAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence 348889888751 1368999999999 9999999999 9999999889998877
No 452
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=4.7e-08 Score=101.67 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=87.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC---CCceEEEeccCCcC----CCCCC-------CcccChhhhhh-----------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~---~~G~v~i~~~d~~~----~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+.++||+|||||||+++++|-+.. ..|+|.++|++... ....| .+.+|||+.+.
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 4679999999999999999998753 35689999987521 11222 23455555443
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh-----------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN-----------LDDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~-----------ls~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
.+.+|+.+||..- .+..+++ .++.++..++. +++++..||+|. ||..
T Consensus 223 ~~~~~R~e~~~~~~d~~lkilGL~~~------~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSs 294 (1391)
T KOG0065|consen 223 YDEVSRREKLAAMTDYLLKILGLDHC------ADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSS 294 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhCchhh------ccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHH
Confidence 4578889998753 2333222 22788888888 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEE
Q 024360 114 THVPVLRNFVDHLKSR-NFNVC 134 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~~-~~~ii 134 (268)
+.-+++ +.++.+++. +.+.+
T Consensus 295 Tal~ii-k~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 295 TAFQII-KALRQLAHITGATAL 315 (1391)
T ss_pred HHHHHH-HHHHHHHhhhcceEE
Confidence 999999 778888754 44443
No 453
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.64 E-value=1.2e-06 Score=71.19 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|+..... . ..+... ..+.+.+....-..++++|+.+++++..++.
T Consensus 111 ~~~~~~iiv~nK~Dl~~~~~-~------~~~~~~---------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 168 (174)
T cd01895 111 EEGKALVIVVNKWDLVEKDS-K------TMKEFK---------------KEIRRKLPFLDYAPIVFISALTGQGVDKLFD 168 (174)
T ss_pred hcCCCEEEEEeccccCCccH-H------HHHHHH---------------HHHHhhcccccCCceEEEeccCCCCHHHHHH
Confidence 35789999999999975420 0 001100 1111111111235799999999999999999
Q ss_pred HHHHh
Q 024360 243 QIDNC 247 (268)
Q Consensus 243 ~id~~ 247 (268)
.+.++
T Consensus 169 ~l~~~ 173 (174)
T cd01895 169 AIDEV 173 (174)
T ss_pred HHHHh
Confidence 98875
No 454
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.64 E-value=1.2e-06 Score=79.25 Aligned_cols=178 Identities=13% Similarity=0.181 Sum_probs=97.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCC---CCChhhhHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGP---NGGLIYCME 79 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~---~g~~~~~~~ 79 (268)
+++.|+|+||||||||++.+.+.++...+.+.+.| |.. +..| . +.+...|... +.+-..|++
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~g-D~~----------t~~D---a-~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEG-DQQ----------TVND---A-ARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECC-CcC----------cHHH---H-HHHHhcCCcEEEecCCCCCcCc
Confidence 68999999999999999999998877665555443 221 1111 1 1233444321 111122222
Q ss_pred hhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHH
Q 024360 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (268)
Q Consensus 80 ~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (268)
. ..+..++. .|.. .+.+++|++.-|+ ..+... .+.. ...++++.+... ...|.+|=
T Consensus 170 a--~mv~~Al~-~L~~-~~~d~liIEnvGnLvcPa~f---------dlge-~~~v~vlsV~eg--~dkplKyp------- 226 (290)
T PRK10463 170 A--QMIADAAP-RLPL-DDNGILFIENVGNLVCPASF---------DLGE-KHKVAVLSVTEG--EDKPLKYP------- 226 (290)
T ss_pred H--HHHHHHHH-HHhh-cCCcEEEEECCCCccCCCcc---------chhh-ceeEEEEECccc--cccchhcc-------
Confidence 1 11212222 2222 1568999998888 687742 2322 233433332222 11233331
Q ss_pred HHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHH
Q 024360 159 SAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIR 238 (268)
Q Consensus 159 ~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 238 (268)
.| +..+.+-|+||+|++.... . +.+.+.+ .++++ +....++++|+.++++++
T Consensus 227 -~~--f~~ADIVVLNKiDLl~~~~-~------dle~~~~--------~lr~l----------np~a~I~~vSA~tGeGld 278 (290)
T PRK10463 227 -HM--FAAASLMLLNKVDLLPYLN-F------DVEKCIA--------CAREV----------NPEIEIILISATSGEGMD 278 (290)
T ss_pred -ch--hhcCcEEEEEhHHcCcccH-H------HHHHHHH--------HHHhh----------CCCCcEEEEECCCCCCHH
Confidence 22 3566778999999975320 0 1111111 11111 123679999999999999
Q ss_pred HHHHHHHH
Q 024360 239 YVLSQIDN 246 (268)
Q Consensus 239 ~l~~~id~ 246 (268)
.++..|.+
T Consensus 279 ~L~~~L~~ 286 (290)
T PRK10463 279 QWLNWLET 286 (290)
T ss_pred HHHHHHHH
Confidence 99999876
No 455
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.63 E-value=2.5e-07 Score=75.82 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=42.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+..+.. ....+.... ... .. ....+....++...|+.+|+.+++++.+++..
T Consensus 103 ~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~--------~~v---~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (171)
T cd00157 103 PNVPIILVGTKIDLRDDEN-TLKKLEKGK--------EPI---TP---EEGEKLAKEIGAIGYMECSALTQEGVKEVFEE 167 (171)
T ss_pred CCCCEEEEEccHHhhhchh-hhhhcccCC--------Ccc---CH---HHHHHHHHHhCCeEEEEeecCCCCCHHHHHHH
Confidence 3699999999999987652 211111000 000 00 11223344566678999999999999999988
Q ss_pred HHH
Q 024360 244 IDN 246 (268)
Q Consensus 244 id~ 246 (268)
|-+
T Consensus 168 i~~ 170 (171)
T cd00157 168 AIR 170 (171)
T ss_pred Hhh
Confidence 754
No 456
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.62 E-value=1.3e-06 Score=72.44 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
+.++.++|.||+-+... .....++... . +++++|+..-...... ..+ ......+.|.+-|+||+|+
T Consensus 61 ~~~~~liDtpG~~~~~~------~~~~~~~~~d-~--~i~v~d~~~~~~~~~~--~~~---~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 61 DRRVNFIDTPGHEDFSS------EVIRGLSVSD-G--AILVVDANEGVQPQTR--EHL---RIAREGGLPIIVAINKIDR 126 (189)
T ss_pred CEEEEEEeCCCcHHHHH------HHHHHHHhcC-E--EEEEEECCCCCcHHHH--HHH---HHHHHCCCCeEEEEECCCC
Confidence 45789999999743221 1112222212 2 2334565542222111 111 1111257899999999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
.... .+.... ..+.+.+.. .+..+.+ .....+.....++++|+.+++++.+++..+.+.+
T Consensus 127 ~~~~-~~~~~~----~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 127 VGEE-DLEEVL----REIKELLGL-IGFISTK-----EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cchh-cHHHHH----HHHHHHHcc-ccccchh-----hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 8633 121111 111111111 0000000 1112233457899999999999999999988764
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.62 E-value=6.3e-07 Score=69.58 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (268)
-.+.|+||+||||||+++.+++.+......+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4678999999999999999999987665334433
No 458
>COG1159 Era GTPase [General function prediction only]
Probab=98.61 E-value=2.1e-06 Score=77.19 Aligned_cols=170 Identities=18% Similarity=0.236 Sum_probs=104.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~~ 83 (268)
.++|+|++-+|||||++.+.|. +|.+....|. |-|..+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~------KisIvS~k~Q----------TTR~~I-------------------------- 45 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQ------KISIVSPKPQ----------TTRNRI-------------------------- 45 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcC------ceEeecCCcc----------hhhhhe--------------------------
Confidence 5899999999999999999985 4555443321 112211
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhC---CCeEEEEEeccccc-ccCHHHHHHHHHHHHH
Q 024360 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR---NFNVCAVYLLDSQF-ITDVTKFISGCMASLS 159 (268)
Q Consensus 84 ~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~---~~~ii~v~l~d~~~-~~d~~~~~s~~l~~~~ 159 (268)
+.+....+..++++|+||=-.+ ++.+. +.+.+.+.. +.- ++++++|+.. +..-..++...+
T Consensus 46 -------~GI~t~~~~QiIfvDTPGih~p--k~~l~-~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d~~il~~l---- 110 (298)
T COG1159 46 -------RGIVTTDNAQIIFVDTPGIHKP--KHALG-ELMNKAARSALKDVD-LILFVVDADEGWGPGDEFILEQL---- 110 (298)
T ss_pred -------eEEEEcCCceEEEEeCCCCCCc--chHHH-HHHHHHHHHHhccCc-EEEEEEeccccCCccHHHHHHHH----
Confidence 0111111667999999998444 33444 333333221 333 3567788776 555444432221
Q ss_pred HHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHH
Q 024360 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 239 (268)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 239 (268)
-....|++-++||.|.+.+...+. .+.+.+ . ...+| ...+|+|+....++..
T Consensus 111 --k~~~~pvil~iNKID~~~~~~~l~--------~~~~~~--------~--------~~~~f--~~ivpiSA~~g~n~~~ 162 (298)
T COG1159 111 --KKTKTPVILVVNKIDKVKPKTVLL--------KLIAFL--------K--------KLLPF--KEIVPISALKGDNVDT 162 (298)
T ss_pred --hhcCCCeEEEEEccccCCcHHHHH--------HHHHHH--------H--------hhCCc--ceEEEeeccccCCHHH
Confidence 114679999999999987761111 010000 0 11123 3689999999999999
Q ss_pred HHHHHHHhhhccccCCCCC
Q 024360 240 VLSQIDNCIQWGEDADLKI 258 (268)
Q Consensus 240 l~~~id~~~~~~e~~~~~~ 258 (268)
|+..+...+-+++-+.|.+
T Consensus 163 L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 163 LLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred HHHHHHHhCCCCCCcCChh
Confidence 9999999988876665543
No 459
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.60 E-value=3.2e-06 Score=72.09 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (268)
+-++|+|++|+|||||+++|.|...+..|.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~ 33 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAP 33 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccc
Confidence 45899999999999999999998776666554
No 460
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.60 E-value=9.8e-08 Score=80.64 Aligned_cols=116 Identities=17% Similarity=0.397 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
...+-++|+||..|. .....+.+..-+..+ .++|+..-..+...- ........+.|.+-|+||+|+
T Consensus 69 ~~~i~~iDtPG~~~f------~~~~~~~~~~~D~ai---lvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHEDF------IKEMIRGLRQADIAI---LVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHHH------HHHHHHHHTTSSEEE---EEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCTS
T ss_pred ccceeecccccccce------eecccceecccccce---eeeeccccccccccc-----ccccccccccceEEeeeeccc
Confidence 567999999998552 224444454334333 335554322222211 222345678899999999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~--~~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+... +++ . ..++...+.+-...- ..+.++|+|+.++.++..|+..+.+..
T Consensus 135 ~~~~--~~~--------~-----------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 135 IEKE--LEE--------I-----------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp SHHH--HHH--------H-----------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred hhhh--HHH--------H-----------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 7211 111 1 111222222212111 258899999999999999999998753
No 461
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.60 E-value=4.1e-06 Score=79.06 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=64.8
Q ss_pred CEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--cCHHHHHHHHHHHHHHH--HhhcCCeeEeecc
Q 024360 100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILSK 174 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~i~vlsk 174 (268)
.+++.|.|+..+.... ..+...+++.+.. .. +++|++|+... .++..-...++-.+... -..+.|.+-|+||
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r--ad-vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNK 284 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLER--CR-VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNK 284 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHh--CC-EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeC
Confidence 4899999998654322 1233355555543 22 35566776532 23322222222211111 1146899999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~-~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
+|+..+. .+... + . .+. +.++. ..++|+|+.+.+++.+++..|-+....
T Consensus 285 iDl~~~~-el~~~-----------l--------~----~l~---~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 285 IDLLDEE-EAEER-----------A--------K----AIV---EALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CccCChH-HHHHH-----------H--------H----HHH---HHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 9996443 11100 0 0 111 11111 246788888888888888877776644
No 462
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.59 E-value=2e-06 Score=68.07 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=36.0
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||.|+.... .. . .....+...+...++++++.+.+++..+++.|
T Consensus 108 ~~p~ivv~nK~D~~~~~------~~-------~---------------~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAK------LK-------T---------------HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CCcEEEEEEcccCCcch------hh-------H---------------HHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 78999999999995432 00 0 01111222333558999999999999999887
Q ss_pred H
Q 024360 245 D 245 (268)
Q Consensus 245 d 245 (268)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 463
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.59 E-value=1e-06 Score=75.01 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
..++|+|++|||||||++.+++-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999984
No 464
>PRK14974 cell division protein FtsY; Provisional
Probab=98.59 E-value=2.8e-06 Score=78.52 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+++++++||||+||||++..++.++...+.+|.+.+-|+.+.. ..+ .+....+.+|+.-..+. +..+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~--------a~e--qL~~~a~~lgv~v~~~~-~g~d-p 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAG--------AIE--QLEEHAERLGVKVIKHK-YGAD-P 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHH--------HHH--HHHHHHHHcCCceeccc-CCCC-H
Confidence 4789999999999999999999988877678888776643210 111 12334444554211000 0000 0
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcC--CHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQI--ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~L--D~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (268)
..-...++..+-.. +.+++|+|+|+.+ +.....++ +.+.+.... .. .+.++|+..-.+....+ .
T Consensus 208 ~~v~~~ai~~~~~~--~~DvVLIDTaGr~~~~~~lm~eL-~~i~~~~~p-d~---~iLVl~a~~g~d~~~~a-------~ 273 (336)
T PRK14974 208 AAVAYDAIEHAKAR--GIDVVLIDTAGRMHTDANLMDEL-KKIVRVTKP-DL---VIFVGDALAGNDAVEQA-------R 273 (336)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCccCCcHHHHHHH-HHHHHhhCC-ce---EEEeeccccchhHHHHH-------H
Confidence 00011222223334 6789999999984 44443333 244433321 22 22335553322211111 1
Q ss_pred HHH-hhcCCeeEeeccccccCCcc
Q 024360 160 AMV-QLELPHVNILSKMDLVTNKK 182 (268)
Q Consensus 160 ~~~-~~~~p~i~vlsk~dll~~~~ 182 (268)
... ..+... -|++|.|.-.+.+
T Consensus 274 ~f~~~~~~~g-iIlTKlD~~~~~G 296 (336)
T PRK14974 274 EFNEAVGIDG-VILTKVDADAKGG 296 (336)
T ss_pred HHHhcCCCCE-EEEeeecCCCCcc
Confidence 111 133434 4899999977654
No 465
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.59 E-value=2.5e-06 Score=74.53 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=94.5
Q ss_pred EEEEcCCCccHHHHHHHHH-cCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhhh
Q 024360 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~-g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~~ 83 (268)
++++|++|+|||||++.+. +...+..|... .+++-....+. ...+ ..-....+|....|..+ ++..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~-~~~~~~~~E~~--~g~t------~~~~~~~~g~~~~~~~~---~~~~- 68 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKAR-LNLFRHKHEVE--SGRT------SSVSNEILGFDSDGEVV---NYPD- 68 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEE-eehhhhhhhhh--cCch------hhhhhhhcccCCCCcee---cCCC-
Confidence 5789999999999999998 45555444332 12221111110 0001 00011123333332111 1100
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHh
Q 024360 84 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (268)
Q Consensus 84 ~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (268)
....+-+.......+..+-++|.||.- ...+..++.+.....-+ ++.++|+..-..+.. .........
T Consensus 69 ~~~~~~~~~~~~~~~~~i~liDtpG~~------~~~~~~~~~~~~~~~D~-~llVvda~~g~~~~d-----~~~l~~l~~ 136 (224)
T cd04165 69 NHLSESDIEICEKSSKLVTFIDLAGHE------RYLKTTLFGLTGYAPDY-AMLVVAANAGIIGMT-----KEHLGLALA 136 (224)
T ss_pred CccccccceeeeeCCcEEEEEECCCcH------HHHHHHHHhhcccCCCE-EEEEEECCCCCcHHH-----HHHHHHHHH
Confidence 000111111112114568899999952 22324444443211112 223455432111111 111222345
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhH-------HHHHHHHHHHhhhcCCeeeEEeeccChhh
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQF-------AKLNKSLIELVDEYSMVSFMPLDLRKESS 236 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~l~~~~~~~i~~~~~~~~~~l~~~~~~~ 236 (268)
.+.|.+-|+||+|++++. .+..... .+.+.+....-.+. .....+ +.-..-.+.++++++|+.++++
T Consensus 137 ~~ip~ivvvNK~D~~~~~-~~~~~~~----~l~~~L~~~g~~~~p~~~~~~~~~~~~-~~~~~~~~~~pi~~vSavtg~G 210 (224)
T cd04165 137 LNIPVFVVVTKIDLAPAN-ILQETLK----DLKRILKVPGVRKLPVPVKSDDDVVLA-ASNFSSERIVPIFQVSNVTGEG 210 (224)
T ss_pred cCCCEEEEEECccccCHH-HHHHHHH----HHHHHhcCCCccccceeeecccceeeh-hhcCCccccCcEEEeeCCCccC
Confidence 778999999999997643 2221111 11111110000000 000000 1111112346899999999999
Q ss_pred HHHHHHHHHH
Q 024360 237 IRYVLSQIDN 246 (268)
Q Consensus 237 ~~~l~~~id~ 246 (268)
+..|.+.+..
T Consensus 211 i~~L~~~L~~ 220 (224)
T cd04165 211 LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 466
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.57 E-value=4.5e-08 Score=88.64 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC--CCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~--~~~G~v~i~~~d~ 40 (268)
++++||.|||||||||++++|.+++. +.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 58999999999999999999999987 6788999888774
No 467
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.54 E-value=1.4e-06 Score=72.47 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
|++++.||+||||||++..++..+...+.+|.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999999987766666788888776
No 468
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.54 E-value=1.6e-06 Score=70.95 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=40.3
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
..|.+-|.||+|+.... .. ..+. +..+.+.++.++++++|+.+++++..++..+
T Consensus 109 ~~p~ilv~nK~Dl~~~~-~~------~~~~-------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 162 (172)
T cd01862 109 NFPFVVLGNKIDLEEKR-QV------STKK-------------------AQQWCQSNGNIPYFETSAKEAINVEQAFETI 162 (172)
T ss_pred CceEEEEEECccccccc-cc------CHHH-------------------HHHHHHHcCCceEEEEECCCCCCHHHHHHHH
Confidence 68999999999997422 00 0000 0112234455789999999999999999998
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-++..
T Consensus 163 ~~~~~ 167 (172)
T cd01862 163 ARKAL 167 (172)
T ss_pred HHHHH
Confidence 87644
No 469
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.53 E-value=6e-07 Score=70.12 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
+.++.+.|.|++-+..... ....+....++++ +|+..-....................+.|.+-|++|+|+
T Consensus 44 ~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR-------RLYYRGADGIILV--YDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEecCChHHHHhHH-------HHHhcCCCEEEEE--EECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 5678999999974332221 1122222233333 444432222222111122445556778999999999998
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHH
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 245 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id 245 (268)
..... .. .. . .........-..++++|..+.+++..++..|-
T Consensus 115 ~~~~~-~~--------~~--~---------------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 115 PEERV-VS--------EE--E---------------LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccccc-hH--------HH--H---------------HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 65441 10 00 0 01111123346799999999999999988763
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.53 E-value=1.2e-06 Score=81.30 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=60.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
-.+.|.||+||||||+++++.+.+.. .++.|.....++.. .++.... .+ .....+..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~~~---~i------~q~evg~~---------- 180 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNKRS---LI------NQREVGLD---------- 180 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCccc---eE------EccccCCC----------
Confidence 35789999999999999999997764 46777665432210 0110000 00 00011110
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
...+..+++.+|.. +|+++++||+. |..+.... ++. +..|+.++.+
T Consensus 181 ~~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~----l~a-a~tGh~v~~T 226 (343)
T TIGR01420 181 TLSFANALRAALRE--DPDVILIGEMR--DLETVELA----LTA-AETGHLVFGT 226 (343)
T ss_pred CcCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHH----HHH-HHcCCcEEEE
Confidence 11244667888888 99999999997 55554332 332 3457776544
No 471
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.51 E-value=3.3e-06 Score=78.11 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHH--hhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~--~~~~p~i~vlsk 174 (268)
..++.+.|.|+.++-... +.+...+++.+.+ .. +++|++|+........+ ..+.-.+.... ..+.|.+-|+||
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~--a~-vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIER--TR-LLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhh--cC-EEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEEC
Confidence 456899999998653322 1233355565533 22 35667786643222222 11111111111 136799999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
+|+.... ... . ... . .. ...++ ..++++|+.+.+++.+++..|.+....
T Consensus 281 iDL~~~~-~~~-------~---~~~--------~----~~---~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 281 IDLLDEE-EER-------E---KRA--------A----LE---LAALG-GPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cccCCch-hHH-------H---HHH--------H----HH---HHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 9996433 110 0 000 0 00 11222 468999999999999999999877643
No 472
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.49 E-value=1.1e-05 Score=65.98 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=39.8
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|.||+|+.... .. ... ...++...++...+++.|+.++.++.+++.
T Consensus 106 ~~~~p~ivv~nK~Dl~~~~-~~------~~~-------------------~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 106 ASNVVLLLIGNKCDLEEQR-EV------LFE-------------------EACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred CCCCcEEEEEECccccccc-cc------CHH-------------------HHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 3578899999999996432 10 000 111122345556789999999999999999
Q ss_pred HHHHh
Q 024360 243 QIDNC 247 (268)
Q Consensus 243 ~id~~ 247 (268)
.+-+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 88653
No 473
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.48 E-value=3e-06 Score=67.90 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCcCCHHhH--HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 98 DDDYLVFDCPGQIELFTH--VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~--~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
+.++.++|.||.-+.... ....+.....+.. .. ++++++|+......... .+... ..+.|.+-|+||+
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~d~~~~~~~~~~---~~~~~----~~~~~vi~v~nK~ 117 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEE--AD-LVLFVIDASRGLDEEDL---EILEL----PADKPIIVVLNKS 117 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh--CC-EEEEEEECCCCCCHHHH---HHHHh----hcCCCEEEEEEch
Confidence 446889999997333221 1112122233322 22 23445665532221111 11111 4578999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
|+..... . ........++++|+.++.++.++++.|.+.
T Consensus 118 D~~~~~~-~---------------------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 118 DLLPDSE-L---------------------------------LSLLAGKPIIAISAKTGEGLDELKEALLEL 155 (157)
T ss_pred hcCCccc-c---------------------------------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 9975431 1 001112468899999999999999988764
No 474
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.48 E-value=4.3e-06 Score=71.67 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=79.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
|.+++++||+|+||||.+.-|+..+...+.+|.+...|..+- ...+. ++.+.+.+++.-..... .+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~--------ga~eQ--L~~~a~~l~vp~~~~~~--~~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI--------GAVEQ--LKTYAEILGVPFYVART--ESDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST--------HHHHH--HHHHHHHHTEEEEESST--TSCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc--------cHHHH--HHHHHHHhccccchhhc--chhh
Confidence 578999999999999999999988776677888887775321 11122 33444555543210000 0001
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (268)
.+-+..++...-.. +-+++|+|.||- -|.....++. ++++... ...+++| +++..-.+ ..- . ...
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~~--~~~~~LV--lsa~~~~~--~~~-~---~~~ 135 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEALN--PDEVHLV--LSATMGQE--DLE-Q---ALA 135 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHHS--SSEEEEE--EEGGGGGH--HHH-H---HHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhcC--CccceEE--EecccChH--HHH-H---HHH
Confidence 11111222222223 578999999997 4554444433 6666552 3334333 33332211 111 0 111
Q ss_pred HHHhhcCCeeEeeccccccCCcc
Q 024360 160 AMVQLELPHVNILSKMDLVTNKK 182 (268)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~ 182 (268)
..-..+...+ |++|.|-..+.+
T Consensus 136 ~~~~~~~~~l-IlTKlDet~~~G 157 (196)
T PF00448_consen 136 FYEAFGIDGL-ILTKLDETARLG 157 (196)
T ss_dssp HHHHSSTCEE-EEESTTSSSTTH
T ss_pred HhhcccCceE-EEEeecCCCCcc
Confidence 1112234444 899999876653
No 475
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.4e-06 Score=78.12 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=28.9
Q ss_pred HHHHHHHh---------cCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 87 DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 87 ~~la~al~---------~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
..++++++ . +|+++|+|||++ ||+..+..+. +.++.+
T Consensus 192 ~~la~~la~~~~~~~~~~--~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 192 LALALKLAEIQLIKEVSG--EYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HHHHHHHHHHHHHHHhhC--CCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 66777664 5 899999999999 9999987766 555443
No 476
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=3e-06 Score=85.41 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=53.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
.+++++||||+||||++..|++.+....| +|.+...|..+ + ...+. +....+.+++.... -.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R--i------gA~eQ--L~~~a~~~gvpv~~------~~ 249 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR--I------GALEQ--LRIYGRILGVPVHA------VK 249 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc--h------HHHHH--HHHHHHhCCCCccc------cC
Confidence 47899999999999999999999865554 78887777422 1 11121 23344445543221 01
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~ 109 (268)
-+..+ ..++....+-+++|+|.||-
T Consensus 250 ~~~~l----~~al~~~~~~D~VLIDTAGR 274 (767)
T PRK14723 250 DAADL----RFALAALGDKHLVLIDTVGM 274 (767)
T ss_pred CHHHH----HHHHHHhcCCCEEEEeCCCC
Confidence 12222 23333322669999999996
No 477
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.47 E-value=5.8e-06 Score=67.24 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=60.2
Q ss_pred EEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 103 VFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 103 ilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
++|.||. ++--.... .++..- .+--.|++++-.+.....-|..|.+ + +..|.+-|++|+|+.++.
T Consensus 40 ~IDTPGEyiE~~~~y~---aLi~ta-~dad~V~ll~dat~~~~~~pP~fa~--------~--f~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYH---ALIVTA-QDADVVLLLQDATEPRSVFPPGFAS--------M--FNKPVIGVITKIDLPSDD 105 (143)
T ss_pred EEECChhheeCHHHHH---HHHHHH-hhCCEEEEEecCCCCCccCCchhhc--------c--cCCCEEEEEECccCccch
Confidence 4899999 88654433 333332 2222343443333344556677663 2 358999999999997433
Q ss_pred cccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHH
Q 024360 182 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 245 (268)
Q Consensus 182 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id 245 (268)
.+++ . .. +.+..-|.-..+++|+.+++++.+|...+.
T Consensus 106 ~~i~--------~------------a~-------~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 106 ANIE--------R------------AK-------KWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hhHH--------H------------HH-------HHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 1111 0 00 112223444468999999999999998875
No 478
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=1.2e-07 Score=82.94 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE-eccC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD 39 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i-~~~d 39 (268)
++++||.||||||||||++.|++.+++.+|.+.+ ...|
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 4799999999999999999999999999998666 5544
No 479
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.44 E-value=6.8e-06 Score=70.30 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.-++++|+.|+|||||+..|.+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~ 26 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998753
No 480
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.44 E-value=2.2e-06 Score=69.09 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHH-HHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 176 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~-l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~d 176 (268)
+.++.++|.||+-+......-. .+.+. +...+. -++++++|+......... .......+.|.+-|+||+|
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~-~~~~~~~~~~~~-d~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDE-KVARDFLLGEKP-DLIVNVVDATNLERNLYL-------TLQLLELGLPVVVALNMID 112 (158)
T ss_pred CeEEEEEECCCccccCCCChhH-HHHHHHhcCCCC-cEEEEEeeCCcchhHHHH-------HHHHHHcCCCEEEEEehhh
Confidence 3468899999983322210000 11122 211222 234556676543221111 1122346899999999999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
+.... .... . ... +.+ .++ ..++++|+.+++++..++..+.++
T Consensus 113 l~~~~-~~~~----~---------------~~~----~~~---~~~-~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 113 EAEKR-GIKI----D---------------LDK----LSE---LLG-VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred hcccc-cchh----h---------------HHH----HHH---hhC-CCeEEEEccCCCCHHHHHHHHHHH
Confidence 96543 1110 0 011 111 111 468999999999999999998876
No 481
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.43 E-value=1.2e-05 Score=74.34 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--cCHHHHHHHHHHHHHHH--HhhcCCeeEeec
Q 024360 99 DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILS 173 (268)
Q Consensus 99 p~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~i~vls 173 (268)
.++.|.|.|+.++-... +.+...+++.+.+ .. +++|++|+... .++..-+..+.-.+... -..+.|.+-|+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhier--ad-~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIER--TR-VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHh--hC-EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 56899999999653322 1233355555532 22 34556776543 23433333332222221 124689999999
Q ss_pred cccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 174 k~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
|+|+.... ..+ .+ .+.+++ .++ ..++++|+.+.+++.+++..|.+.+
T Consensus 282 K~DL~~~~-~~~--------~~---------------~~~l~~---~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 282 KIDLLDEE-ELA--------EL---------------LKELKK---ALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CccCCChH-HHH--------HH---------------HHHHHH---HcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99996432 110 00 011111 122 4689999999999999999987653
No 482
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.42 E-value=2.7e-06 Score=83.80 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+..++++|.+-+||||+++.++|-. +.++-+|..||.. .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~----------------q~VgNwpGvTVEk-------------------------k 41 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN----------------QKVGNWPGVTVEK-------------------------K 41 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC----------------ceecCCCCeeEEE-------------------------E
Confidence 3568999999999999999999953 2333345555532 1
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (268)
.+.+ .+..-++-|.|-||. |++++..+.. -+++-.++..=++|+++|+..+. +-+...-
T Consensus 42 eg~~---------~~~~~~i~ivDLPG~YSL~~~S~DE~V---ar~~ll~~~~D~ivnVvDAtnLe-------RnLyltl 102 (653)
T COG0370 42 EGKL---------KYKGHEIEIVDLPGTYSLTAYSEDEKV---ARDFLLEGKPDLIVNVVDATNLE-------RNLYLTL 102 (653)
T ss_pred EEEE---------EecCceEEEEeCCCcCCCCCCCchHHH---HHHHHhcCCCCEEEEEcccchHH-------HHHHHHH
Confidence 1111 111456889999998 8888876643 44443344444577789988865 3344455
Q ss_pred HHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHH
Q 024360 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 239 (268)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 239 (268)
....++.|.+-++|+.|..++++ ++ + |.+.| .+. + -++.+|.+++.++++++
T Consensus 103 QLlE~g~p~ilaLNm~D~A~~~G-i~--I--D~~~L---------------~~~----L----GvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 103 QLLELGIPMILALNMIDEAKKRG-IR--I--DIEKL---------------SKL----L----GVPVVPTVAKRGEGLEE 154 (653)
T ss_pred HHHHcCCCeEEEeccHhhHHhcC-Cc--c--cHHHH---------------HHH----h----CCCEEEEEeecCCCHHH
Confidence 66789999999999999988763 21 1 22222 111 1 16788999999999999
Q ss_pred HHHHHHHh
Q 024360 240 VLSQIDNC 247 (268)
Q Consensus 240 l~~~id~~ 247 (268)
+..+|.+.
T Consensus 155 l~~~i~~~ 162 (653)
T COG0370 155 LKRAIIEL 162 (653)
T ss_pred HHHHHHHh
Confidence 99988764
No 483
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=3.3e-06 Score=79.05 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=52.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC--ceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~--G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
.+++++||||+||||++..|++.+.... .+|.+...|..+ ..-.+.+ ..+-+.+|+.-.. -.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~EqL--~~~a~~~gv~~~~------~~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQL--RIFGKILGVPVHA------VK 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHHH--HHHHHHcCCceEe------cC
Confidence 4788999999999999999998754332 367766655421 1122222 2233444543210 01
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHH
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~ 113 (268)
....+ ..++..+.+.+++|+|+||- .|..
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~ 232 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT 232 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence 11112 22333223789999999986 5554
No 484
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.41 E-value=7.6e-07 Score=77.90 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.5
Q ss_pred eEEEEEcCCCccHHHHHHHHH-cCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~-g~l~~~~G~v~i~~~d 39 (268)
.++.|.|++|||||||+..++ +.++ .++++.+...+
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e 62 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE 62 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 578899999999999999884 3333 46677777653
No 485
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.41 E-value=4.8e-06 Score=69.84 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+-++|+||+|||||||++.+.+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999999999986
No 486
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.41 E-value=4.6e-06 Score=70.50 Aligned_cols=117 Identities=15% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
+-.+.++|.||+- .+.+..++...... . +++++|+..-...... ..+.. .-..+.|.+-|+||+|+
T Consensus 67 ~~~~~i~DtpG~~------~~~~~~~~~~~~~d-~--vi~VvD~~~~~~~~~~-~~~~~----~~~~~~~~iiv~NK~Dl 132 (192)
T cd01889 67 NLQITLVDCPGHA------SLIRTIIGGAQIID-L--MLLVVDATKGIQTQTA-ECLVI----GEILCKKLIVVLNKIDL 132 (192)
T ss_pred CceEEEEECCCcH------HHHHHHHHHHhhCC-E--EEEEEECCCCccHHHH-HHHHH----HHHcCCCEEEEEECccc
Confidence 4578999999982 22223333332212 2 2334565432222211 11111 11236799889999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhh--cCCeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~--~~~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
.... ..+. ..+++ .+.+...+.+ +.-+.++|+|+.+++++.+|+..++...
T Consensus 133 ~~~~-~~~~--------~~~~~-----------~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 133 IPEE-ERER--------KIEKM-----------KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCHH-HHHH--------HHHHH-----------HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 7433 1110 01111 1111122222 2237899999999999999999988653
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.40 E-value=3e-06 Score=80.92 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
-.++|+|+||+|||||+++|+++.+++.|.|.+.|...
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 35799999999999999999999999999999887654
No 488
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.40 E-value=9.2e-06 Score=69.14 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=40.1
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
...|.+-|.||+|+.... .. ..+ .+.++...++...+++.|+.+++++.+++..
T Consensus 109 ~~~piilv~NK~Dl~~~~-~~------~~~-------------------~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 162 (201)
T cd04107 109 EPIPCLLLANKCDLKKRL-AK------DGE-------------------QMDQFCKENGFIGWFETSAKEGINIEEAMRF 162 (201)
T ss_pred CCCcEEEEEECCCccccc-cc------CHH-------------------HHHHHHHHcCCceEEEEeCCCCCCHHHHHHH
Confidence 467999999999996422 00 000 1111223445567899999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+..-
T Consensus 163 l~~~l~ 168 (201)
T cd04107 163 LVKNIL 168 (201)
T ss_pred HHHHHH
Confidence 877653
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.39 E-value=3.3e-07 Score=77.62 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
..++|+|||||||||++++++|+++++.|.|.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 46899999999999999999999999999888754
No 490
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.39 E-value=1.3e-05 Score=65.05 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=36.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .. ... .. . . +...++ ..++++|+.+++++.+++..
T Consensus 106 ~~~piiiv~NK~Dl~~~~-~~------~~~----~~--------~----~---~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 106 DEFPMILVGNKADLEHQR-KV------SRE----EG--------Q----E---LARKLK-IPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred CCCCEEEEeeCccccccc-ee------cHH----HH--------H----H---HHHHcC-CcEEEeeCCCCCCHHHHHHH
Confidence 467999999999985432 10 000 00 0 1 122333 36899999999999999988
Q ss_pred HHHh
Q 024360 244 IDNC 247 (268)
Q Consensus 244 id~~ 247 (268)
+=+.
T Consensus 159 l~~~ 162 (164)
T cd04145 159 LVRV 162 (164)
T ss_pred HHHh
Confidence 7554
No 491
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.38 E-value=5.6e-06 Score=74.47 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++++||+|+||||++..++..+...+.+|.+...|+.+ ....-.+..+.+..++.-.... ...+ ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~-~~~d-p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQK-EGAD-PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCC-CCCC-HH
Confidence 6788999999999999999999888777789999888622 1111223344555553311000 0000 00
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHH
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l 126 (268)
...-..+..+... +-+++|+|.|+. .|.....++. .+.+..
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~~ 183 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRVI 183 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHHH
Confidence 1110223333345 789999999998 3444333333 444433
No 492
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.38 E-value=1.6e-05 Score=70.30 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC--CCCCCceEE
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~--l~~~~G~v~ 34 (268)
.++|+|++||||||++++++|. .+...|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999998 555566554
No 493
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.37 E-value=9e-06 Score=65.19 Aligned_cols=109 Identities=11% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCCEEEEeCCCcCCHHh--HHHHHHHHHHHHHhCCCeEEEEEeccccc-ccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQIELFT--HVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~--~~~i~~~ll~~l~~~~~~ii~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
+-++.++|.||.-+... ...+.......+.. .. ++++++|+.. .......+... +-..+.|.+-|+||
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~--~d-~ii~v~d~~~~~~~~~~~~~~~------~~~~~~piiiv~nK 114 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEE--AD-VILFVVDGREGLTPADEEIAKY------LRKSKKPVILVVNK 114 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh--CC-EEEEEEeccccCCccHHHHHHH------HHhcCCCEEEEEEC
Confidence 34688999999833221 11222122222322 22 2334455543 21111111111 12356999999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHH
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 246 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~ 246 (268)
+|+..... . . +.+...+..+++++|+.+++++.+++..+-+
T Consensus 115 ~D~~~~~~-~-----------~-------------------~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 115 VDNIKEED-E-----------A-------------------AEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred cccCChHH-H-----------H-------------------HHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 99965431 0 0 0011223335789999999999999988754
No 494
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=6.6e-06 Score=77.32 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=32.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
..++|+|||||||||++..|++.+...+.+|.+...|+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 578999999999999999999987655557877777753
No 495
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.37 E-value=8.1e-07 Score=83.31 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=76.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-CCCC---------C--------------Ccc---------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFD---------Y--------------PVA--------- 50 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-~~~~---------y--------------~~~--------- 50 (268)
+.+++|.||-||||-+++++|-++|.-|.-- ..|.. +-+. | +|.
T Consensus 102 vlglvgtngigkstAlkilagk~kpnlg~~~---~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k 178 (592)
T KOG0063|consen 102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYD---NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVK 178 (592)
T ss_pred hccccccCcccHHHHHHHHhCCCCCCCCCCC---CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHH
Confidence 5789999999999999999999999877531 11100 0011 1 110
Q ss_pred cChhhhhh-------HHHHHHHhCCCCCCChhhhHhhhhhhHH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHH
Q 024360 51 MDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNLD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (268)
Q Consensus 51 ~~i~~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~ 116 (268)
.++...+. ..++++.+.|+.- +++-.+++| .++|.+.+. +.++.+||||.+ ||...+.
T Consensus 179 ~~v~~~l~~~~~r~~~~~~~~~~~L~~~------~~re~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRL 250 (592)
T KOG0063|consen 179 GTVGSLLDRKDERDNKEEVCDQLDLNNL------LDREVEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRL 250 (592)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhH------HHhhhhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhh
Confidence 01111111 3445555544432 222222222 677777778 999999999999 9999998
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEec
Q 024360 117 PVLRNFVDHLKSR-NFNVCAVYLL 139 (268)
Q Consensus 117 ~i~~~ll~~l~~~-~~~ii~v~l~ 139 (268)
... ..|+.+..- ...+++.|.+
T Consensus 251 kaA-~~IRsl~~p~~YiIVVEHDL 273 (592)
T KOG0063|consen 251 KAA-ITIRSLINPDRYIIVVEHDL 273 (592)
T ss_pred hHH-HHHHHhhCCCCeEEEEEeec
Confidence 877 778887643 4444444543
No 496
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.37 E-value=2.4e-06 Score=70.61 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+++|+|++|||||||++.+.+..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc
Confidence 467999999999999999887643
No 497
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.36 E-value=2.3e-05 Score=63.85 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.1
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+.++++|+.+++++.+++..+.+..
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHhh
Confidence 5789999999999999999987654
No 498
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.36 E-value=3.8e-06 Score=68.44 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=37.2
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .. ..+ .. .. +...++ ..++++|+.+++++.+++..
T Consensus 104 ~~~pii~v~nK~Dl~~~~-~~------~~~----~~------------~~---~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 104 DDVPIVLVGNKCDLESER-VV------STE----EG------------KE---LARQWG-CPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred CCCCEEEEEECccccccc-eE------cHH----HH------------HH---HHHHcC-CEEEEeecCCCCCHHHHHHH
Confidence 468999999999986432 11 000 00 01 112233 57899999999999999988
Q ss_pred HHHh
Q 024360 244 IDNC 247 (268)
Q Consensus 244 id~~ 247 (268)
+=+.
T Consensus 157 l~~~ 160 (164)
T smart00173 157 LVRE 160 (164)
T ss_pred HHHH
Confidence 7543
No 499
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=1.2e-05 Score=75.75 Aligned_cols=149 Identities=16% Similarity=0.221 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCC----CCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~----~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~ 77 (268)
+.+++++||+|+||||.+.-++..+.. .+.+|.+...|+.+.. -.+. +..+.+.+|+.-..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a--------a~eQ--L~~~a~~lgvpv~~----- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG--------AKKQ--IQTYGDIMGIPVKA----- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH--------HHHH--HHHHhhcCCcceEe-----
Confidence 357899999999999999999987653 3457888887753210 0111 22333444442110
Q ss_pred HhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc-ccCHHHHHHHH
Q 024360 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGC 154 (268)
Q Consensus 78 ~~~~~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~-~~d~~~~~s~~ 154 (268)
..... .+..++....+.+++|+|+||- -|.....++. .++..... ...++.| +++.. ..+....+
T Consensus 239 -~~~~~----~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~-~~l~~~~~-~~e~~LV--lsat~~~~~~~~~~--- 306 (388)
T PRK12723 239 -IESFK----DLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMK-ELLNACGR-DAEFHLA--VSSTTKTSDVKEIF--- 306 (388)
T ss_pred -eCcHH----HHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHH-HHHHhcCC-CCeEEEE--EcCCCCHHHHHHHH---
Confidence 11112 2222222222789999999998 3443322222 33333321 2223333 34332 12222221
Q ss_pred HHHHHHHHhhcCCeeEeeccccccCCcc
Q 024360 155 MASLSAMVQLELPHVNILSKMDLVTNKK 182 (268)
Q Consensus 155 l~~~~~~~~~~~p~i~vlsk~dll~~~~ 182 (268)
...-.++.-. .|++|.|--.+.+
T Consensus 307 ----~~~~~~~~~~-~I~TKlDet~~~G 329 (388)
T PRK12723 307 ----HQFSPFSYKT-VIFTKLDETTCVG 329 (388)
T ss_pred ----HHhcCCCCCE-EEEEeccCCCcch
Confidence 1211234444 4899999877664
No 500
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.35 E-value=2.6e-05 Score=63.09 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+++|+|+.|+|||||++.++|.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 6899999999999999999874
Done!