Query 024360
Match_columns 268
No_of_seqs 339 out of 3124
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.9 9.5E-26 3.3E-30 208.3 12.3 137 3-152 55-232 (366)
2 2pcj_A ABC transporter, lipopr 99.9 3.7E-25 1.3E-29 191.8 13.6 125 3-136 31-196 (224)
3 3tif_A Uncharacterized ABC tra 99.9 2.9E-25 1E-29 193.8 12.8 126 3-136 32-202 (235)
4 2onk_A Molybdate/tungstate ABC 99.9 2E-25 6.8E-30 195.5 11.4 124 4-136 26-183 (240)
5 3gfo_A Cobalt import ATP-bindi 99.9 9.8E-26 3.4E-30 201.2 9.5 136 3-151 35-211 (275)
6 2olj_A Amino acid ABC transpor 99.9 4.2E-25 1.4E-29 195.9 12.7 135 3-150 51-225 (263)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 5.3E-25 1.8E-29 203.0 13.2 136 3-151 31-206 (359)
8 1vpl_A ABC transporter, ATP-bi 99.9 3.4E-25 1.2E-29 195.8 11.4 125 3-136 42-202 (256)
9 3rlf_A Maltose/maltodextrin im 99.9 4.9E-25 1.7E-29 204.6 12.6 136 3-151 30-201 (381)
10 1b0u_A Histidine permease; ABC 99.9 5.6E-25 1.9E-29 195.0 11.7 136 3-150 33-219 (262)
11 1ji0_A ABC transporter; ATP bi 99.9 6.1E-25 2.1E-29 192.2 10.3 125 3-136 33-195 (240)
12 1g6h_A High-affinity branched- 99.9 1.3E-24 4.5E-29 192.0 11.8 136 3-151 34-220 (257)
13 4g1u_C Hemin import ATP-bindin 99.9 1.8E-24 6.1E-29 192.2 12.5 151 3-179 38-228 (266)
14 1z47_A CYSA, putative ABC-tran 99.9 1.3E-24 4.6E-29 200.2 11.8 132 3-147 42-209 (355)
15 3d31_A Sulfate/molybdate ABC t 99.9 2.4E-24 8.4E-29 198.1 13.4 125 3-136 27-184 (348)
16 2yyz_A Sugar ABC transporter, 99.9 1.7E-24 5.7E-29 199.9 12.2 125 3-136 30-190 (359)
17 2it1_A 362AA long hypothetical 99.9 2.1E-24 7.2E-29 199.4 12.4 125 3-136 30-190 (362)
18 1oxx_K GLCV, glucose, ABC tran 99.9 1.4E-24 4.9E-29 200.0 9.9 125 3-136 32-197 (353)
19 1v43_A Sugar-binding transport 99.9 2.5E-24 8.6E-29 199.6 11.1 125 3-136 38-198 (372)
20 1g29_1 MALK, maltose transport 99.9 2.5E-24 8.4E-29 199.7 11.0 125 3-136 30-196 (372)
21 2yz2_A Putative ABC transporte 99.9 2.7E-24 9.1E-29 191.0 10.6 125 3-136 34-194 (266)
22 1sgw_A Putative ABC transporte 99.9 9.3E-24 3.2E-28 181.9 13.7 129 3-136 36-189 (214)
23 2ihy_A ABC transporter, ATP-bi 99.9 3.4E-24 1.2E-28 191.6 9.5 125 3-136 48-219 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 5.5E-24 1.9E-28 187.3 10.2 124 3-136 27-189 (249)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 2E-23 6.7E-28 183.7 12.1 125 3-136 30-199 (250)
26 2nq2_C Hypothetical ABC transp 99.9 3.3E-23 1.1E-27 182.7 11.3 125 3-136 32-185 (253)
27 2ff7_A Alpha-hemolysin translo 99.9 5.2E-23 1.8E-27 180.8 11.9 130 3-136 36-200 (247)
28 2pjz_A Hypothetical protein ST 99.9 1.2E-22 4.2E-27 180.1 10.8 120 4-136 32-181 (263)
29 2ixe_A Antigen peptide transpo 99.9 1.2E-22 4.1E-27 180.8 10.7 125 3-136 46-213 (271)
30 1mv5_A LMRA, multidrug resista 99.9 1.6E-22 5.4E-27 177.1 10.4 130 3-136 29-194 (243)
31 2zu0_C Probable ATP-dependent 99.9 3.3E-22 1.1E-26 177.6 10.8 130 3-136 47-220 (267)
32 3nh6_A ATP-binding cassette SU 99.9 6.1E-22 2.1E-26 179.1 9.2 130 3-136 81-245 (306)
33 2ghi_A Transport protein; mult 99.9 1.8E-21 6.3E-26 172.1 11.9 129 3-136 47-210 (260)
34 2pze_A Cystic fibrosis transme 99.8 1.1E-21 3.9E-26 170.3 8.0 129 3-136 35-186 (229)
35 2cbz_A Multidrug resistance-as 99.8 7.4E-22 2.5E-26 172.4 6.1 128 3-136 32-185 (237)
36 3ozx_A RNAse L inhibitor; ATP 99.8 1.7E-21 5.8E-26 188.6 8.9 136 3-151 295-453 (538)
37 3gd7_A Fusion complex of cysti 99.8 2.6E-21 9E-26 180.3 7.6 124 3-137 48-211 (390)
38 1yrb_A ATP(GTP)binding protein 99.8 9E-20 3.1E-24 159.3 15.7 243 2-254 14-261 (262)
39 1yqt_A RNAse L inhibitor; ATP- 99.8 1E-20 3.4E-25 183.2 9.0 125 3-136 48-214 (538)
40 3bk7_A ABC transporter ATP-bin 99.8 2.9E-20 9.8E-25 182.3 11.6 124 3-136 383-528 (607)
41 3bk7_A ABC transporter ATP-bin 99.8 1.2E-20 4.2E-25 184.9 8.6 125 3-136 118-284 (607)
42 3ozx_A RNAse L inhibitor; ATP 99.8 1.3E-20 4.5E-25 182.3 8.7 124 3-136 26-193 (538)
43 3b60_A Lipid A export ATP-bind 99.8 3.2E-20 1.1E-24 181.2 11.3 129 3-136 370-535 (582)
44 3b5x_A Lipid A export ATP-bind 99.8 6.5E-20 2.2E-24 179.0 11.2 130 3-136 370-535 (582)
45 1yqt_A RNAse L inhibitor; ATP- 99.8 3E-20 1E-24 179.9 8.4 124 3-136 313-458 (538)
46 2bbs_A Cystic fibrosis transme 99.8 1.4E-20 4.8E-25 169.0 5.6 129 3-136 65-215 (290)
47 2yl4_A ATP-binding cassette SU 99.8 4.6E-20 1.6E-24 180.5 9.5 129 3-136 371-538 (595)
48 4a82_A Cystic fibrosis transme 99.8 7.2E-20 2.5E-24 178.6 9.1 129 3-136 368-532 (578)
49 3j16_B RLI1P; ribosome recycli 99.8 4.3E-20 1.5E-24 181.0 6.7 125 3-136 104-277 (608)
50 3j16_B RLI1P; ribosome recycli 99.8 2.3E-19 7.8E-24 175.8 11.4 130 3-150 379-534 (608)
51 3qf4_B Uncharacterized ABC tra 99.8 1.2E-19 4E-24 177.8 7.7 129 3-136 382-546 (598)
52 3qf4_A ABC transporter, ATP-bi 99.8 2.4E-19 8.3E-24 175.2 9.9 129 3-136 370-534 (587)
53 3ux8_A Excinuclease ABC, A sub 99.7 1.7E-17 5.7E-22 164.4 11.7 131 3-136 45-260 (670)
54 3g5u_A MCG1178, multidrug resi 99.7 2.7E-17 9.3E-22 173.1 9.7 130 3-136 1060-1226(1284)
55 4f4c_A Multidrug resistance pr 99.7 4.8E-17 1.6E-21 171.7 10.9 126 3-136 445-609 (1321)
56 3g5u_A MCG1178, multidrug resi 99.7 6.1E-17 2.1E-21 170.5 10.7 125 3-136 417-581 (1284)
57 4f4c_A Multidrug resistance pr 99.7 2.3E-17 7.9E-22 174.1 7.5 154 3-181 1106-1297(1321)
58 3b85_A Phosphate starvation-in 99.7 3.4E-18 1.2E-22 146.4 -0.1 122 3-134 23-153 (208)
59 2iw3_A Elongation factor 3A; a 99.7 6.9E-17 2.3E-21 164.7 6.5 35 3-37 700-734 (986)
60 4gp7_A Metallophosphoesterase; 99.6 2.7E-17 9.4E-22 135.9 1.6 50 84-136 89-155 (171)
61 2iw3_A Elongation factor 3A; a 99.6 6.4E-16 2.2E-20 157.6 11.6 119 3-136 462-601 (986)
62 1tq4_A IIGP1, interferon-induc 99.6 2.9E-17 9.8E-22 154.0 0.9 148 3-155 70-248 (413)
63 3ux8_A Excinuclease ABC, A sub 99.6 9E-16 3.1E-20 152.0 11.2 75 59-136 523-602 (670)
64 2npi_A Protein CLP1; CLP1-PCF1 99.6 2.4E-16 8.1E-21 149.8 2.4 122 3-136 139-294 (460)
65 3b9q_A Chloroplast SRP recepto 99.6 5.9E-15 2E-19 133.0 9.2 145 2-171 100-279 (302)
66 1ye8_A Protein THEP1, hypothet 99.6 1.6E-15 5.5E-20 126.6 4.1 121 4-145 2-144 (178)
67 3szr_A Interferon-induced GTP- 99.5 3.7E-15 1.3E-19 146.2 4.6 157 5-181 48-230 (608)
68 2pt7_A CAG-ALFA; ATPase, prote 99.5 7.9E-14 2.7E-18 127.1 11.7 116 3-157 172-287 (330)
69 2og2_A Putative signal recogni 99.5 6.6E-14 2.2E-18 129.0 10.9 146 2-172 157-337 (359)
70 2vf7_A UVRA2, excinuclease ABC 99.5 2E-14 6.8E-19 145.1 7.5 75 59-136 710-789 (842)
71 2eyu_A Twitching motility prot 99.5 6.6E-14 2.3E-18 123.6 10.0 117 3-156 26-144 (261)
72 3pih_A Uvrabc system protein A 99.5 1.2E-13 4.1E-18 140.5 10.6 77 59-136 785-864 (916)
73 4aby_A DNA repair protein RECN 99.5 1E-13 3.6E-18 128.9 8.5 47 86-136 303-352 (415)
74 1znw_A Guanylate kinase, GMP k 99.5 1.6E-15 5.5E-20 128.7 -3.5 58 92-156 137-200 (207)
75 2r6f_A Excinuclease ABC subuni 99.4 1.3E-13 4.5E-18 140.0 9.4 74 60-136 826-904 (972)
76 3sop_A Neuronal-specific septi 99.4 6E-15 2E-19 131.0 -0.9 39 2-40 2-40 (270)
77 2ehv_A Hypothetical protein PH 99.4 1.3E-13 4.3E-18 118.8 5.8 124 3-136 31-178 (251)
78 2ygr_A Uvrabc system protein A 99.4 3.7E-13 1.3E-17 137.1 10.0 74 60-136 844-922 (993)
79 1rj9_A FTSY, signal recognitio 99.3 2.2E-12 7.4E-17 116.4 9.6 152 3-172 103-281 (304)
80 1e69_A Chromosome segregation 99.3 1.6E-12 5.6E-17 117.6 8.8 48 87-136 228-278 (322)
81 3jvv_A Twitching mobility prot 99.3 1.8E-12 6.3E-17 119.3 9.1 118 3-156 124-242 (356)
82 4a74_A DNA repair and recombin 99.3 2.4E-12 8.3E-17 109.3 9.2 37 3-39 26-69 (231)
83 2kjq_A DNAA-related protein; s 99.3 3E-12 1E-16 103.6 8.4 98 4-153 38-138 (149)
84 3thx_A DNA mismatch repair pro 99.3 2.2E-12 7.6E-17 131.6 7.5 107 3-136 663-781 (934)
85 3aez_A Pantothenate kinase; tr 99.3 1.8E-13 6E-18 123.9 -1.0 106 2-112 90-209 (312)
86 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 6.1E-12 2.1E-16 116.0 9.1 47 87-136 288-341 (365)
87 2w0m_A SSO2452; RECA, SSPF, un 99.3 1.9E-11 6.6E-16 103.5 10.5 117 3-136 24-164 (235)
88 3thx_B DNA mismatch repair pro 99.2 3.7E-12 1.3E-16 129.7 5.7 47 87-136 744-792 (918)
89 2o8b_B DNA mismatch repair pro 99.2 2.7E-12 9.4E-17 132.2 4.5 113 3-136 790-908 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.2 3.3E-12 1.1E-16 123.0 4.8 122 3-136 282-413 (525)
91 3e70_C DPA, signal recognition 99.2 1.1E-11 3.8E-16 112.9 7.3 150 2-172 129-302 (328)
92 2ewv_A Twitching motility prot 99.2 2E-11 6.8E-16 112.9 9.0 118 3-156 137-255 (372)
93 3ec2_A DNA replication protein 99.2 1.7E-11 5.9E-16 101.0 7.6 98 3-136 39-139 (180)
94 1cr0_A DNA primase/helicase; R 99.2 6E-12 2E-16 112.0 5.0 126 3-136 36-193 (296)
95 1tf7_A KAIC; homohexamer, hexa 99.2 3.5E-11 1.2E-15 115.8 9.4 126 3-136 40-181 (525)
96 1pzn_A RAD51, DNA repair and r 99.2 1.5E-11 5.3E-16 112.7 5.1 38 3-40 132-176 (349)
97 2i3b_A HCR-ntpase, human cance 99.1 2.4E-12 8.1E-17 108.4 -1.5 35 4-40 3-37 (189)
98 1nlf_A Regulatory protein REPA 99.1 3E-11 1E-15 106.8 5.1 128 3-137 31-178 (279)
99 1ewq_A DNA mismatch repair pro 99.1 2.5E-11 8.5E-16 121.7 5.1 105 3-136 577-694 (765)
100 3asz_A Uridine kinase; cytidin 99.1 1.3E-12 4.4E-17 110.3 -3.9 122 2-133 6-154 (211)
101 3qkt_A DNA double-strand break 99.1 1.6E-10 5.5E-15 105.2 9.7 47 87-136 263-310 (339)
102 1vma_A Cell division protein F 99.1 1.7E-09 5.9E-14 97.4 14.5 93 2-109 104-197 (306)
103 1wb9_A DNA mismatch repair pro 99.1 5.4E-11 1.9E-15 119.8 5.0 109 3-136 608-726 (800)
104 2cvh_A DNA repair and recombin 99.1 1E-09 3.6E-14 92.3 11.5 118 3-137 21-153 (220)
105 1z6g_A Guanylate kinase; struc 99.1 6.5E-12 2.2E-16 107.5 -2.5 34 3-40 24-57 (218)
106 1ls1_A Signal recognition part 99.1 2E-09 6.9E-14 96.4 13.5 109 2-126 98-209 (295)
107 2qm8_A GTPase/ATPase; G protei 99.0 2.3E-09 8E-14 97.7 14.0 40 3-42 56-95 (337)
108 1s96_A Guanylate kinase, GMP k 99.0 3.6E-11 1.2E-15 103.4 0.7 39 3-41 17-57 (219)
109 1n0w_A DNA repair protein RAD5 99.0 3E-09 1E-13 90.9 12.7 37 3-39 25-68 (243)
110 2bbw_A Adenylate kinase 4, AK4 99.0 1.3E-11 4.3E-16 107.2 -2.4 37 3-39 28-67 (246)
111 2qnr_A Septin-2, protein NEDD5 99.0 9E-10 3.1E-14 98.9 9.6 36 3-39 19-55 (301)
112 2www_A Methylmalonic aciduria 99.0 2.7E-09 9.2E-14 97.7 12.0 197 3-250 75-279 (349)
113 1sxj_E Activator 1 40 kDa subu 99.0 1.2E-09 4E-14 98.9 8.2 116 5-136 39-170 (354)
114 1lw7_A Transcriptional regulat 99.0 4.1E-10 1.4E-14 103.4 5.1 128 3-136 171-325 (365)
115 2yhs_A FTSY, cell division pro 98.9 9E-09 3.1E-13 98.1 13.2 39 2-40 293-331 (503)
116 2dpy_A FLII, flagellum-specifi 98.9 4.5E-10 1.5E-14 106.0 3.9 145 3-161 158-332 (438)
117 2p67_A LAO/AO transport system 98.9 4E-09 1.4E-13 96.1 9.9 195 3-249 57-260 (341)
118 2obl_A ESCN; ATPase, hydrolase 98.9 1.5E-09 5.3E-14 99.4 7.0 147 3-162 72-244 (347)
119 1htw_A HI0065; nucleotide-bind 98.9 4.4E-10 1.5E-14 91.8 2.6 37 3-40 34-70 (158)
120 3pqc_A Probable GTP-binding pr 98.9 1.2E-07 4E-12 77.5 17.3 122 98-249 67-193 (195)
121 2gza_A Type IV secretion syste 98.9 6.4E-09 2.2E-13 95.6 10.5 124 3-158 176-300 (361)
122 4dhe_A Probable GTP-binding pr 98.9 2.8E-07 9.6E-12 77.4 19.1 126 98-250 78-211 (223)
123 2px0_A Flagellar biosynthesis 98.9 5E-09 1.7E-13 93.9 8.5 87 3-109 106-193 (296)
124 2qag_C Septin-7; cell cycle, c 98.8 2.2E-09 7.4E-14 100.7 6.0 126 3-141 32-179 (418)
125 3lda_A DNA repair protein RAD5 98.8 1.4E-08 4.7E-13 94.7 10.6 119 3-137 179-325 (400)
126 3lxx_A GTPase IMAP family memb 98.8 1.3E-07 4.5E-12 81.1 15.5 129 98-250 77-214 (239)
127 1svi_A GTP-binding protein YSX 98.8 5.4E-07 1.9E-11 73.8 17.6 121 98-248 68-193 (195)
128 3kl4_A SRP54, signal recogniti 98.8 3.9E-08 1.3E-12 92.5 11.8 152 2-180 97-253 (433)
129 2qag_B Septin-6, protein NEDD5 98.8 3.7E-09 1.3E-13 99.2 4.5 49 85-136 165-215 (427)
130 2v9p_A Replication protein E1; 98.8 5E-10 1.7E-14 100.9 -1.4 98 3-119 127-233 (305)
131 3iev_A GTP-binding protein ERA 98.8 4.3E-08 1.5E-12 88.0 11.3 126 99-256 59-188 (308)
132 3k53_A Ferrous iron transport 98.8 2E-08 6.7E-13 88.2 8.7 114 98-250 49-166 (271)
133 1pui_A ENGB, probable GTP-bind 98.7 5.8E-09 2E-13 87.0 4.1 124 3-130 27-200 (210)
134 2dyk_A GTP-binding protein; GT 98.7 2.4E-07 8.4E-12 73.2 12.2 110 98-247 48-159 (161)
135 3p32_A Probable GTPase RV1496/ 98.7 2.1E-07 7.1E-12 85.1 13.4 198 2-250 79-284 (355)
136 1j8m_F SRP54, signal recogniti 98.7 2.1E-07 7.3E-12 83.3 13.2 41 2-42 98-138 (297)
137 3i8s_A Ferrous iron transport 98.7 2.8E-08 9.5E-13 87.7 7.2 162 2-249 3-168 (274)
138 2jeo_A Uridine-cytidine kinase 98.7 3.2E-09 1.1E-13 92.0 0.7 25 2-26 25-49 (245)
139 3euj_A Chromosome partition pr 98.7 5.2E-09 1.8E-13 99.7 2.0 38 4-41 31-68 (483)
140 2wjg_A FEOB, ferrous iron tran 98.7 8.4E-08 2.9E-12 78.3 8.9 115 98-251 53-170 (188)
141 2dr3_A UPF0273 protein PH0284; 98.7 7E-08 2.4E-12 82.3 8.8 39 98-136 128-169 (247)
142 1oix_A RAS-related protein RAB 98.6 6E-08 2.1E-12 80.3 7.1 36 3-38 30-76 (191)
143 1kao_A RAP2A; GTP-binding prot 98.6 8.4E-07 2.9E-11 70.1 13.5 58 164-248 107-164 (167)
144 1c1y_A RAS-related protein RAP 98.6 9.6E-07 3.3E-11 70.0 13.7 59 164-248 107-165 (167)
145 3b1v_A Ferrous iron uptake tra 98.6 7.2E-07 2.5E-11 78.8 14.0 112 99-249 49-163 (272)
146 1sq5_A Pantothenate kinase; P- 98.6 2.1E-08 7.2E-13 90.0 3.8 37 3-39 81-122 (308)
147 2ce2_X GTPase HRAS; signaling 98.6 5E-07 1.7E-11 71.3 11.4 56 165-248 108-163 (166)
148 2wji_A Ferrous iron transport 98.6 4.7E-07 1.6E-11 72.8 11.4 24 3-26 4-27 (165)
149 1ky3_A GTP-binding protein YPT 98.6 2.1E-07 7.2E-12 75.0 9.3 60 164-248 117-176 (182)
150 1wms_A RAB-9, RAB9, RAS-relate 98.6 6E-07 2.1E-11 72.2 11.9 60 164-250 115-174 (177)
151 2a9k_A RAS-related protein RAL 98.6 1.2E-06 4.1E-11 70.8 13.3 57 165-248 123-179 (187)
152 1zp6_A Hypothetical protein AT 98.6 4.3E-08 1.5E-12 80.8 4.7 35 3-39 10-44 (191)
153 1ega_A Protein (GTP-binding pr 98.6 1.1E-06 3.8E-11 78.5 14.2 118 98-250 55-175 (301)
154 2bdt_A BH3686; alpha-beta prot 98.6 3.7E-08 1.3E-12 81.4 4.1 37 1-40 1-37 (189)
155 3iby_A Ferrous iron transport 98.5 3.1E-07 1.1E-11 80.3 9.8 111 98-247 47-164 (256)
156 3a00_A Guanylate kinase, GMP k 98.5 2.6E-08 8.9E-13 82.5 2.6 30 3-32 2-31 (186)
157 1u8z_A RAS-related protein RAL 98.5 1.5E-06 5.1E-11 68.7 12.8 57 165-248 109-165 (168)
158 2gj8_A MNME, tRNA modification 98.5 5.6E-07 1.9E-11 73.1 10.5 28 224-251 140-167 (172)
159 2f1r_A Molybdopterin-guanine d 98.5 1E-08 3.5E-13 84.7 -0.0 39 1-39 1-42 (171)
160 2qtf_A Protein HFLX, GTP-bindi 98.5 1.8E-06 6E-11 79.4 14.9 28 224-251 328-355 (364)
161 3t34_A Dynamin-related protein 98.5 5.2E-07 1.8E-11 82.4 11.0 30 4-33 36-67 (360)
162 1mky_A Probable GTP-binding pr 98.5 1.7E-06 5.7E-11 81.3 14.7 66 163-250 290-355 (439)
163 1qhl_A Protein (cell division 98.5 4.5E-09 1.5E-13 90.8 -2.8 36 5-40 30-65 (227)
164 2ffh_A Protein (FFH); SRP54, s 98.5 1.9E-06 6.3E-11 80.9 14.9 40 2-41 98-137 (425)
165 3a1s_A Iron(II) transport prot 98.5 3E-07 1E-11 80.4 8.9 113 98-249 51-166 (258)
166 2zr9_A Protein RECA, recombina 98.5 2.2E-07 7.5E-12 85.0 8.3 90 3-110 62-152 (349)
167 2fn4_A P23, RAS-related protei 98.5 1E-06 3.4E-11 70.8 11.4 61 163-250 112-172 (181)
168 2qu8_A Putative nucleolar GTP- 98.5 5.8E-06 2E-10 70.0 16.7 62 165-249 142-204 (228)
169 2bov_A RAla, RAS-related prote 98.5 1.7E-06 5.9E-11 71.3 13.1 60 164-250 118-177 (206)
170 1z2a_A RAS-related protein RAB 98.5 2.2E-07 7.4E-12 73.9 6.8 58 164-248 108-165 (168)
171 1zu4_A FTSY; GTPase, signal re 98.5 1.3E-07 4.4E-12 85.6 5.9 40 2-41 105-144 (320)
172 3tqc_A Pantothenate kinase; bi 98.5 6.6E-08 2.3E-12 87.6 4.0 39 2-40 92-132 (321)
173 3c8u_A Fructokinase; YP_612366 98.5 3.4E-08 1.2E-12 83.3 2.0 38 3-40 23-63 (208)
174 2cxx_A Probable GTP-binding pr 98.5 4.3E-06 1.5E-10 67.8 14.6 26 225-250 159-184 (190)
175 1u0l_A Probable GTPase ENGC; p 98.5 7.1E-08 2.4E-12 86.3 3.9 38 3-40 170-210 (301)
176 3clv_A RAB5 protein, putative; 98.5 1.4E-06 4.9E-11 71.0 11.4 23 3-25 8-30 (208)
177 1p9r_A General secretion pathw 98.5 7.7E-08 2.6E-12 90.2 4.0 38 3-40 168-205 (418)
178 1udx_A The GTP-binding protein 98.4 7.9E-08 2.7E-12 90.0 3.8 139 4-155 159-320 (416)
179 3dm5_A SRP54, signal recogniti 98.4 2.5E-06 8.6E-11 80.3 14.1 153 2-181 100-255 (443)
180 3t1o_A Gliding protein MGLA; G 98.4 7.1E-06 2.4E-10 66.7 15.0 58 164-249 134-191 (198)
181 3con_A GTPase NRAS; structural 98.4 7.9E-07 2.7E-11 72.6 9.2 58 164-249 125-182 (190)
182 2erx_A GTP-binding protein DI- 98.4 9.3E-06 3.2E-10 64.4 15.3 58 164-248 108-165 (172)
183 1ek0_A Protein (GTP-binding pr 98.4 2E-06 6.8E-11 68.2 11.3 61 164-248 107-167 (170)
184 1lvg_A Guanylate kinase, GMP k 98.4 8.1E-08 2.8E-12 80.6 2.6 25 3-27 5-29 (198)
185 1m2o_B GTP-binding protein SAR 98.4 2.7E-06 9.2E-11 70.1 11.8 66 164-246 123-188 (190)
186 1rz3_A Hypothetical protein rb 98.4 8.1E-08 2.8E-12 80.6 2.5 39 2-40 22-60 (201)
187 3pih_A Uvrabc system protein A 98.4 1.3E-07 4.6E-12 96.2 4.3 113 21-136 387-522 (916)
188 3kkq_A RAS-related protein M-R 98.4 4E-06 1.4E-10 67.8 12.4 59 163-248 121-180 (183)
189 3tr0_A Guanylate kinase, GMP k 98.4 1.4E-07 4.7E-12 78.5 3.5 33 3-39 8-40 (205)
190 1f2t_B RAD50 ABC-ATPase; DNA d 98.4 5.8E-07 2E-11 72.4 7.0 45 89-136 74-119 (148)
191 1lnz_A SPO0B-associated GTP-bi 98.4 4.3E-07 1.5E-11 82.9 6.8 121 99-251 206-331 (342)
192 1fnn_A CDC6P, cell division co 98.4 1.9E-06 6.4E-11 78.2 10.9 116 4-136 46-165 (389)
193 1zj6_A ADP-ribosylation factor 98.4 1.2E-05 4.1E-10 65.5 14.5 69 164-256 116-184 (187)
194 3q85_A GTP-binding protein REM 98.4 1.7E-06 5.9E-11 68.9 9.1 58 165-249 109-166 (169)
195 2v3c_C SRP54, signal recogniti 98.4 1.3E-06 4.5E-11 82.1 9.6 152 3-180 100-253 (432)
196 3sjy_A Translation initiation 98.3 5.7E-06 2E-10 76.7 13.8 113 99-249 75-191 (403)
197 1vg8_A RAS-related protein RAB 98.3 5.5E-07 1.9E-11 74.5 6.2 59 164-249 116-174 (207)
198 4dsu_A GTPase KRAS, isoform 2B 98.3 5.5E-06 1.9E-10 67.0 12.1 59 164-250 108-166 (189)
199 1wf3_A GTP-binding protein; GT 98.3 1.2E-05 3.9E-10 72.0 15.2 119 98-250 54-173 (301)
200 2yv5_A YJEQ protein; hydrolase 98.3 2.4E-07 8.3E-12 83.0 4.1 37 3-40 166-205 (302)
201 2oap_1 GSPE-2, type II secreti 98.3 2.3E-07 8E-12 89.0 4.2 37 3-39 261-297 (511)
202 1mh1_A RAC1; GTP-binding, GTPa 98.3 6.5E-06 2.2E-10 66.4 12.3 71 165-249 109-179 (186)
203 2gf0_A GTP-binding protein DI- 98.3 1.1E-05 3.8E-10 66.0 13.8 59 164-250 113-171 (199)
204 3q72_A GTP-binding protein RAD 98.3 4.3E-06 1.5E-10 66.3 11.0 59 164-249 105-163 (166)
205 2y8e_A RAB-protein 6, GH09086P 98.3 1.3E-06 4.6E-11 70.0 7.8 59 163-248 117-175 (179)
206 1z08_A RAS-related protein RAB 98.3 4.2E-06 1.4E-10 66.6 10.5 62 160-248 106-167 (170)
207 2ged_A SR-beta, signal recogni 98.3 3.9E-06 1.3E-10 68.6 10.5 24 3-26 49-72 (193)
208 2g6b_A RAS-related protein RAB 98.3 9E-07 3.1E-11 71.3 6.5 59 164-249 115-173 (180)
209 2e87_A Hypothetical protein PH 98.3 2.1E-06 7.3E-11 78.3 9.8 57 165-250 280-336 (357)
210 1nij_A Hypothetical protein YJ 98.3 1.6E-07 5.3E-12 84.7 2.1 39 3-41 5-51 (318)
211 3lxw_A GTPase IMAP family memb 98.3 2.1E-06 7E-11 74.5 9.1 131 98-250 69-208 (247)
212 4gzl_A RAS-related C3 botulinu 98.3 6.7E-06 2.3E-10 68.4 12.0 70 164-247 133-202 (204)
213 1upt_A ARL1, ADP-ribosylation 98.3 2E-05 6.8E-10 62.6 14.1 61 164-248 107-167 (171)
214 3lnc_A Guanylate kinase, GMP k 98.3 2E-07 6.9E-12 79.6 2.3 26 3-28 28-54 (231)
215 1kgd_A CASK, peripheral plasma 98.3 2.5E-07 8.6E-12 76.2 2.8 38 3-40 6-44 (180)
216 2rcn_A Probable GTPase ENGC; Y 98.3 3.8E-07 1.3E-11 83.8 4.3 37 3-39 216-254 (358)
217 3ihw_A Centg3; RAS, centaurin, 98.3 1.3E-05 4.3E-10 65.7 13.1 61 164-248 118-178 (184)
218 3hr8_A Protein RECA; alpha and 98.3 3E-06 1E-10 77.7 10.2 89 3-109 62-150 (356)
219 1z0f_A RAB14, member RAS oncog 98.3 4.2E-06 1.4E-10 67.0 9.9 59 163-248 118-176 (179)
220 3t5g_A GTP-binding protein RHE 98.3 3.4E-06 1.2E-10 68.2 9.3 61 164-251 110-170 (181)
221 3bwd_D RAC-like GTP-binding pr 98.3 3.7E-06 1.3E-10 67.7 9.6 68 165-248 112-179 (182)
222 3tkl_A RAS-related protein RAB 98.3 1.5E-05 5.2E-10 64.9 13.4 61 163-250 119-179 (196)
223 4eun_A Thermoresistant glucoki 98.3 3.5E-07 1.2E-11 76.4 3.4 34 3-40 30-63 (200)
224 1nrj_B SR-beta, signal recogni 98.3 5.8E-06 2E-10 69.1 10.8 24 3-26 13-36 (218)
225 1wb1_A Translation elongation 98.3 1.1E-05 3.8E-10 76.7 14.1 114 98-249 72-188 (482)
226 1m7b_A RND3/RHOE small GTP-bin 98.3 1.5E-05 5.3E-10 64.7 13.1 71 164-248 110-181 (184)
227 2atx_A Small GTP binding prote 98.3 1.3E-05 4.4E-10 65.6 12.5 70 165-248 122-191 (194)
228 1odf_A YGR205W, hypothetical 3 98.3 1.1E-07 3.7E-12 84.9 -0.1 28 2-29 31-58 (290)
229 2j1l_A RHO-related GTP-binding 98.3 1.7E-05 5.9E-10 66.4 13.4 72 164-249 137-208 (214)
230 2fv8_A H6, RHO-related GTP-bin 98.2 8E-06 2.7E-10 67.9 11.1 70 165-248 129-198 (207)
231 1r8s_A ADP-ribosylation factor 98.2 9.9E-06 3.4E-10 64.0 11.2 25 224-248 136-160 (164)
232 2fg5_A RAB-22B, RAS-related pr 98.2 7.7E-06 2.6E-10 67.1 10.9 59 164-249 127-185 (192)
233 1t9h_A YLOQ, probable GTPase E 98.2 1.9E-07 6.6E-12 84.0 1.0 38 3-40 174-214 (307)
234 1z0j_A RAB-22, RAS-related pro 98.2 3.4E-06 1.2E-10 66.9 8.3 25 224-248 143-167 (170)
235 2lkc_A Translation initiation 98.2 1.2E-05 4E-10 64.5 11.5 66 163-250 105-171 (178)
236 1fzq_A ADP-ribosylation factor 98.2 2.3E-05 7.9E-10 63.8 13.4 61 164-248 116-176 (181)
237 2oil_A CATX-8, RAS-related pro 98.2 3.6E-06 1.2E-10 68.9 8.5 58 164-248 129-186 (193)
238 4e22_A Cytidylate kinase; P-lo 98.2 1.2E-07 4.2E-12 82.5 -0.4 32 3-34 28-62 (252)
239 3t5d_A Septin-7; GTP-binding p 98.2 1.1E-05 3.8E-10 70.7 12.1 61 165-250 144-204 (274)
240 2j41_A Guanylate kinase; GMP, 98.2 5.9E-07 2E-11 74.6 3.7 29 3-31 7-35 (207)
241 1kag_A SKI, shikimate kinase I 98.2 4.3E-07 1.5E-11 73.5 2.7 27 1-27 3-29 (173)
242 2gco_A H9, RHO-related GTP-bin 98.2 1.4E-05 4.6E-10 66.2 11.9 70 165-248 129-198 (201)
243 2il1_A RAB12; G-protein, GDP, 98.2 4.5E-06 1.5E-10 68.7 8.8 59 164-248 130-188 (192)
244 2vp4_A Deoxynucleoside kinase; 98.2 5.9E-07 2E-11 76.9 3.4 34 3-40 21-54 (230)
245 1jjv_A Dephospho-COA kinase; P 98.2 7E-07 2.4E-11 74.6 3.8 25 1-25 1-25 (206)
246 1gwn_A RHO-related GTP-binding 98.2 2.4E-05 8.2E-10 65.3 13.3 71 164-248 131-202 (205)
247 2r6a_A DNAB helicase, replicat 98.2 1.8E-06 6.2E-11 81.4 7.0 132 3-137 204-361 (454)
248 1r2q_A RAS-related protein RAB 98.2 1.4E-05 4.6E-10 63.3 11.1 25 224-248 143-167 (170)
249 2j37_W Signal recognition part 98.2 2.1E-05 7.3E-10 75.2 14.3 152 3-181 102-256 (504)
250 3dz8_A RAS-related protein RAB 98.2 7.9E-06 2.7E-10 66.9 9.9 25 224-248 160-184 (191)
251 1zd9_A ADP-ribosylation factor 98.2 4.1E-05 1.4E-09 62.5 14.3 61 164-248 123-183 (188)
252 3c5c_A RAS-like protein 12; GD 98.2 2.7E-05 9.1E-10 63.7 13.0 58 164-248 126-184 (187)
253 2nzj_A GTP-binding protein REM 98.2 1.2E-05 4E-10 64.2 10.5 58 165-249 111-168 (175)
254 3uie_A Adenylyl-sulfate kinase 98.2 4E-07 1.4E-11 76.1 1.8 37 2-39 25-63 (200)
255 1f6b_A SAR1; gtpases, N-termin 98.2 1E-05 3.5E-10 67.0 10.5 24 224-247 173-196 (198)
256 4djt_A GTP-binding nuclear pro 98.2 8.1E-06 2.8E-10 68.2 9.9 68 161-255 113-180 (218)
257 3oes_A GTPase rhebl1; small GT 98.2 1E-05 3.5E-10 66.9 10.4 61 164-251 128-188 (201)
258 2atv_A RERG, RAS-like estrogen 98.2 1E-05 3.6E-10 66.5 10.2 59 164-249 131-190 (196)
259 2qag_A Septin-2, protein NEDD5 98.2 2.3E-06 7.8E-11 78.5 6.7 28 3-30 38-65 (361)
260 3bc1_A RAS-related protein RAB 98.2 2.5E-05 8.4E-10 63.2 12.3 59 164-249 126-184 (195)
261 4bas_A ADP-ribosylation factor 98.2 2.7E-05 9.3E-10 63.6 12.6 62 165-249 127-188 (199)
262 2fh5_B SR-beta, signal recogni 98.2 0.00017 5.9E-09 59.8 17.5 23 3-25 8-30 (214)
263 2iwr_A Centaurin gamma 1; ANK 98.1 3.4E-05 1.2E-09 61.9 12.5 26 223-248 142-167 (178)
264 2efe_B Small GTP-binding prote 98.1 4.8E-06 1.6E-10 67.0 7.4 59 164-249 116-174 (181)
265 3reg_A RHO-like small GTPase; 98.1 2.3E-05 7.8E-10 64.2 11.6 62 164-249 126-187 (194)
266 2hjg_A GTP-binding protein ENG 98.1 2.3E-05 7.8E-10 73.4 13.0 113 98-249 50-164 (436)
267 1ksh_A ARF-like protein 2; sma 98.1 2.4E-05 8.4E-10 63.4 11.6 62 164-249 118-179 (186)
268 2xtp_A GTPase IMAP family memb 98.1 3E-06 1E-10 73.3 6.4 23 3-25 23-45 (260)
269 3kta_A Chromosome segregation 98.1 9.9E-07 3.4E-11 72.1 3.1 28 4-31 28-55 (182)
270 2f7s_A C25KG, RAS-related prot 98.1 5.7E-06 1.9E-10 69.1 7.9 59 164-249 140-198 (217)
271 2hup_A RAS-related protein RAB 98.1 9.1E-06 3.1E-10 67.4 8.8 59 164-248 133-191 (201)
272 2hxs_A RAB-26, RAS-related pro 98.1 3.4E-05 1.2E-09 61.8 11.9 25 224-248 147-171 (178)
273 2p5s_A RAS and EF-hand domain 98.1 1.8E-05 6.1E-10 65.3 10.5 25 224-248 171-195 (199)
274 3llu_A RAS-related GTP-binding 98.1 7.6E-05 2.6E-09 61.4 14.2 23 3-25 21-43 (196)
275 3tau_A Guanylate kinase, GMP k 98.1 1.4E-06 4.9E-11 73.3 3.7 34 3-36 9-43 (208)
276 1knq_A Gluconate kinase; ALFA/ 98.1 1.5E-06 5.1E-11 70.6 3.6 33 3-39 9-41 (175)
277 3gee_A MNME, tRNA modification 98.1 8.5E-06 2.9E-10 77.5 9.2 23 3-25 234-256 (476)
278 2z4s_A Chromosomal replication 98.1 6.6E-06 2.3E-10 77.3 8.4 98 4-136 132-233 (440)
279 1moz_A ARL1, ADP-ribosylation 98.1 1.9E-05 6.6E-10 63.6 10.2 61 164-248 118-178 (183)
280 2hjg_A GTP-binding protein ENG 98.1 1.3E-05 4.4E-10 75.1 10.2 66 163-250 284-349 (436)
281 2h57_A ADP-ribosylation factor 98.1 1.6E-05 5.6E-10 64.8 9.6 26 224-249 161-186 (190)
282 2c78_A Elongation factor TU-A; 98.1 0.0001 3.4E-09 68.3 15.9 23 3-25 12-34 (405)
283 2j0v_A RAC-like GTP-binding pr 98.1 2.2E-05 7.4E-10 65.3 10.3 68 165-250 113-180 (212)
284 2yc2_C IFT27, small RAB-relate 98.1 8.7E-06 3E-10 67.0 7.8 58 164-248 131-190 (208)
285 2gf9_A RAS-related protein RAB 98.1 5.9E-06 2E-10 67.5 6.6 58 164-248 126-183 (189)
286 1zbd_A Rabphilin-3A; G protein 98.1 2.5E-05 8.4E-10 64.4 10.3 59 164-249 112-170 (203)
287 2q3h_A RAS homolog gene family 98.1 1.3E-05 4.3E-10 66.0 8.4 71 165-249 124-194 (201)
288 2b6h_A ADP-ribosylation factor 98.0 1.6E-05 5.4E-10 65.5 8.9 25 224-248 165-189 (192)
289 1cke_A CK, MSSA, protein (cyti 98.0 5.5E-07 1.9E-11 76.1 -0.1 34 2-35 5-41 (227)
290 2aka_B Dynamin-1; fusion prote 98.0 8.7E-05 3E-09 65.0 14.2 24 3-26 27-50 (299)
291 2bcg_Y Protein YP2, GTP-bindin 98.0 2.9E-05 9.9E-10 64.2 10.4 59 164-249 112-170 (206)
292 1l8q_A Chromosomal replication 98.0 1.7E-05 5.7E-10 70.9 9.4 97 4-136 39-137 (324)
293 2r6f_A Excinuclease ABC subuni 98.0 5.8E-06 2E-10 84.3 7.0 67 62-136 487-562 (972)
294 2x8a_A Nuclear valosin-contain 98.0 3E-06 1E-10 74.7 4.3 36 3-40 45-80 (274)
295 2f9l_A RAB11B, member RAS onco 98.0 2.2E-06 7.7E-11 70.9 3.2 25 3-27 6-30 (199)
296 4dcu_A GTP-binding protein ENG 98.0 3.6E-05 1.2E-09 72.5 11.7 66 163-250 304-369 (456)
297 2vf7_A UVRA2, excinuclease ABC 98.0 7.3E-06 2.5E-10 82.9 7.3 67 62-136 362-437 (842)
298 2x2e_A Dynamin-1; nitration, h 98.0 0.00011 3.7E-09 66.8 14.5 23 4-26 33-55 (353)
299 1jwy_B Dynamin A GTPase domain 98.0 9.6E-05 3.3E-09 65.4 13.9 24 3-26 25-48 (315)
300 2elf_A Protein translation elo 98.0 1.7E-05 5.8E-10 73.0 9.1 112 98-249 59-179 (370)
301 3bos_A Putative DNA replicatio 98.0 9.8E-06 3.3E-10 68.2 6.9 34 3-36 53-86 (242)
302 3cbq_A GTP-binding protein REM 98.0 5E-05 1.7E-09 62.7 11.1 59 164-249 129-187 (195)
303 1z06_A RAS-related protein RAB 98.0 6.6E-05 2.3E-09 61.1 11.6 22 3-24 21-42 (189)
304 2o52_A RAS-related protein RAB 98.0 1.4E-05 4.8E-10 66.1 7.6 59 164-249 129-187 (200)
305 2w58_A DNAI, primosome compone 98.0 1.1E-05 3.8E-10 66.9 6.9 33 3-35 55-87 (202)
306 3r7w_A Gtpase1, GTP-binding pr 98.0 4.4E-05 1.5E-09 68.2 11.2 23 3-25 4-26 (307)
307 2ygr_A Uvrabc system protein A 98.0 6.7E-06 2.3E-10 84.1 6.4 49 85-136 528-579 (993)
308 3j2k_7 ERF3, eukaryotic polype 98.0 0.00023 7.9E-09 66.7 16.5 23 3-25 18-40 (439)
309 2a5j_A RAS-related protein RAB 98.0 1.4E-05 4.9E-10 65.3 7.3 58 164-248 125-182 (191)
310 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 4.4E-06 1.5E-10 77.6 4.5 36 2-37 20-67 (392)
311 2x77_A ADP-ribosylation factor 98.0 7.6E-06 2.6E-10 66.7 5.2 62 164-249 122-183 (189)
312 1g7s_A Translation initiation 97.9 9.6E-05 3.3E-09 72.1 13.6 26 224-249 192-217 (594)
313 3th5_A RAS-related C3 botulinu 97.2 1.1E-06 3.9E-11 72.8 0.0 69 165-247 134-202 (204)
314 4dcu_A GTP-binding protein ENG 97.9 7.3E-05 2.5E-09 70.4 12.3 23 2-24 23-45 (456)
315 3geh_A MNME, tRNA modification 97.9 4.9E-05 1.7E-09 72.0 11.0 22 3-24 225-246 (462)
316 2dy1_A Elongation factor G; tr 97.9 1.7E-05 5.7E-10 78.4 7.9 40 210-249 234-273 (665)
317 2ius_A DNA translocase FTSK; n 97.9 1.1E-05 3.7E-10 77.3 6.3 38 5-42 170-209 (512)
318 3ney_A 55 kDa erythrocyte memb 97.9 4.4E-06 1.5E-10 70.4 3.2 25 3-27 20-44 (197)
319 2xxa_A Signal recognition part 97.9 9.1E-05 3.1E-09 69.6 12.4 41 2-42 100-141 (433)
320 3o47_A ADP-ribosylation factor 97.9 3.7E-05 1.3E-09 69.4 9.4 61 164-248 265-325 (329)
321 1kk1_A EIF2gamma; initiation o 97.9 0.00021 7.2E-09 66.2 14.5 113 99-249 83-199 (410)
322 1np6_A Molybdopterin-guanine d 97.9 4.7E-06 1.6E-10 68.8 2.8 40 1-40 5-44 (174)
323 2qt1_A Nicotinamide riboside k 97.9 9.2E-06 3.1E-10 67.8 4.6 35 2-40 21-55 (207)
324 2j69_A Bacterial dynamin-like 97.9 0.00024 8.3E-09 70.4 15.5 24 2-25 69-92 (695)
325 2if2_A Dephospho-COA kinase; a 97.9 5.4E-06 1.9E-10 68.9 3.1 22 3-24 2-23 (204)
326 1ly1_A Polynucleotide kinase; 97.9 8E-06 2.7E-10 66.0 3.7 24 1-24 1-24 (181)
327 3cr8_A Sulfate adenylyltranfer 97.9 4.2E-06 1.4E-10 81.0 2.2 35 3-37 370-406 (552)
328 1ixz_A ATP-dependent metallopr 97.9 9.5E-06 3.3E-10 69.9 4.2 34 3-38 50-83 (254)
329 3p26_A Elongation factor 1 alp 97.8 4.5E-05 1.5E-09 72.4 9.2 23 3-25 34-56 (483)
330 1s0u_A EIF-2-gamma, translatio 97.8 8.1E-05 2.8E-09 69.0 10.7 26 224-249 172-197 (408)
331 4fcw_A Chaperone protein CLPB; 97.8 3.7E-05 1.3E-09 67.7 8.0 98 3-125 48-145 (311)
332 2wkq_A NPH1-1, RAS-related C3 97.8 6E-05 2.1E-09 66.7 9.4 70 165-248 259-328 (332)
333 3gj0_A GTP-binding nuclear pro 97.8 4.7E-05 1.6E-09 63.7 8.3 22 3-24 16-38 (221)
334 1u94_A RECA protein, recombina 97.8 4.5E-05 1.5E-09 69.8 8.7 36 3-38 64-99 (356)
335 3q3j_B RHO-related GTP-binding 97.8 0.00018 6.2E-09 60.2 11.8 73 164-250 130-203 (214)
336 2yvu_A Probable adenylyl-sulfa 97.8 6.2E-06 2.1E-10 67.7 2.2 36 2-37 13-48 (186)
337 3t61_A Gluconokinase; PSI-biol 97.8 8E-06 2.7E-10 67.9 2.8 25 2-26 18-42 (202)
338 1iy2_A ATP-dependent metallopr 97.8 1.4E-05 4.7E-10 70.0 4.3 34 3-38 74-107 (278)
339 3izq_1 HBS1P, elongation facto 97.8 0.00014 4.7E-09 71.2 11.7 23 3-25 168-190 (611)
340 3def_A T7I23.11 protein; chlor 97.8 3.3E-05 1.1E-09 67.2 6.6 22 3-24 37-58 (262)
341 2ce7_A Cell division protein F 97.8 9.3E-05 3.2E-09 70.3 9.9 25 2-26 49-73 (476)
342 3k1j_A LON protease, ATP-depen 97.8 9.7E-05 3.3E-09 72.0 10.4 35 4-38 62-97 (604)
343 1v5w_A DMC1, meiotic recombina 97.8 0.00014 4.8E-09 65.9 10.8 23 3-25 123-145 (343)
344 2pez_A Bifunctional 3'-phospho 97.8 9.9E-06 3.4E-10 66.0 2.6 34 3-37 6-41 (179)
345 3kta_B Chromosome segregation 97.7 4.7E-05 1.6E-09 62.7 6.5 48 87-136 73-123 (173)
346 3dpu_A RAB family protein; roc 97.7 0.00016 5.6E-09 69.2 11.3 112 98-250 97-208 (535)
347 1in4_A RUVB, holliday junction 97.7 2.5E-06 8.5E-11 77.1 -1.4 34 3-36 52-89 (334)
348 1zun_B Sulfate adenylate trans 97.7 5.7E-05 1.9E-09 70.7 7.5 23 3-25 25-47 (434)
349 1d2e_A Elongation factor TU (E 97.7 5.8E-05 2E-09 69.8 7.5 23 3-25 4-26 (397)
350 1m7g_A Adenylylsulfate kinase; 97.7 8.4E-06 2.9E-10 68.5 1.5 36 2-37 25-62 (211)
351 2qby_A CDC6 homolog 1, cell di 97.7 1.5E-05 5.2E-10 71.8 3.1 26 4-29 47-72 (386)
352 3qq5_A Small GTP-binding prote 97.7 2.8E-05 9.5E-10 72.9 4.7 113 100-251 84-197 (423)
353 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.1E-05 7.1E-10 63.0 3.3 22 3-24 24-45 (149)
354 1xp8_A RECA protein, recombina 97.7 0.00016 5.5E-09 66.4 9.4 90 3-110 75-164 (366)
355 1w1w_A Structural maintenance 97.7 1.8E-05 6.2E-10 73.9 3.0 49 87-136 342-393 (430)
356 1qhx_A CPT, protein (chloramph 97.6 2.3E-05 7.9E-10 63.4 3.2 27 1-27 2-28 (178)
357 1xjc_A MOBB protein homolog; s 97.6 2E-05 6.7E-10 64.8 2.7 40 2-41 4-43 (169)
358 1jny_A EF-1-alpha, elongation 97.6 0.0002 6.9E-09 67.0 9.9 22 3-24 7-28 (435)
359 4eaq_A DTMP kinase, thymidylat 97.6 3.4E-05 1.2E-09 66.1 4.2 34 2-36 26-59 (229)
360 3kb2_A SPBC2 prophage-derived 97.6 2.7E-05 9.2E-10 62.3 3.2 24 3-26 2-25 (173)
361 2r8r_A Sensor protein; KDPD, P 97.6 8E-05 2.7E-09 64.0 6.2 40 2-41 6-45 (228)
362 2z43_A DNA repair and recombin 97.6 0.00032 1.1E-08 63.0 10.4 36 3-38 108-149 (324)
363 1h65_A Chloroplast outer envel 97.6 0.00011 3.6E-09 64.2 7.0 23 3-25 40-62 (270)
364 2o5v_A DNA replication and rep 97.6 4.2E-05 1.4E-09 70.1 4.6 37 87-126 274-320 (359)
365 3lvq_E ARF-GAP with SH3 domain 97.6 0.00032 1.1E-08 66.3 10.5 63 164-250 422-484 (497)
366 3lw7_A Adenylate kinase relate 97.6 3.4E-05 1.2E-09 61.5 3.1 20 3-22 2-21 (179)
367 2v1u_A Cell division control p 97.6 0.00017 5.9E-09 64.8 8.1 24 4-27 46-69 (387)
368 1via_A Shikimate kinase; struc 97.5 3.1E-05 1.1E-09 62.8 2.7 24 3-26 5-28 (175)
369 3n70_A Transport activator; si 97.5 0.00033 1.1E-08 55.2 8.4 29 4-32 26-54 (145)
370 1qf9_A UMP/CMP kinase, protein 97.5 4.6E-05 1.6E-09 62.0 3.5 26 1-26 5-30 (194)
371 1f60_A Elongation factor EEF1A 97.5 0.00039 1.3E-08 65.5 10.4 23 3-25 8-30 (458)
372 3cm0_A Adenylate kinase; ATP-b 97.5 4.6E-05 1.6E-09 62.1 3.5 25 2-26 4-28 (186)
373 3vaa_A Shikimate kinase, SK; s 97.5 4.4E-05 1.5E-09 63.4 3.3 24 3-26 26-49 (199)
374 3cb4_D GTP-binding protein LEP 97.5 0.0003 1E-08 68.6 9.7 110 100-249 72-181 (599)
375 1e6c_A Shikimate kinase; phosp 97.5 4E-05 1.4E-09 61.6 3.0 26 1-26 1-26 (173)
376 2qor_A Guanylate kinase; phosp 97.5 3.3E-05 1.1E-09 64.4 2.4 25 3-27 13-37 (204)
377 3h4m_A Proteasome-activating n 97.5 0.00092 3.1E-08 58.0 11.8 24 3-26 52-75 (285)
378 4ad8_A DNA repair protein RECN 97.5 0.00012 4E-09 70.0 6.3 46 87-136 406-454 (517)
379 2p5t_B PEZT; postsegregational 97.5 4.9E-05 1.7E-09 65.8 3.3 34 2-37 32-65 (253)
380 1vht_A Dephospho-COA kinase; s 97.5 6E-05 2.1E-09 63.3 3.7 23 2-24 4-26 (218)
381 1dar_A EF-G, elongation factor 97.5 0.00071 2.4E-08 67.0 11.9 42 210-251 242-283 (691)
382 3ake_A Cytidylate kinase; CMP 97.5 5.5E-05 1.9E-09 62.5 3.4 26 1-26 1-26 (208)
383 1tev_A UMP-CMP kinase; ploop, 97.5 6.3E-05 2.2E-09 61.3 3.7 25 2-26 3-27 (196)
384 3tr5_A RF-3, peptide chain rel 97.5 0.00061 2.1E-08 65.5 11.1 30 222-251 249-278 (528)
385 1mky_A Probable GTP-binding pr 97.5 0.0014 4.9E-08 61.2 13.2 28 222-249 138-165 (439)
386 1gtv_A TMK, thymidylate kinase 97.5 1.6E-05 5.3E-10 66.3 -0.2 32 4-35 2-33 (214)
387 2ywe_A GTP-binding protein LEP 97.5 0.00047 1.6E-08 67.2 10.2 108 100-249 74-183 (600)
388 1uf9_A TT1252 protein; P-loop, 97.5 7.6E-05 2.6E-09 61.4 3.9 24 2-25 8-31 (203)
389 3avx_A Elongation factor TS, e 97.5 0.00042 1.5E-08 72.1 10.1 23 3-25 297-319 (1289)
390 2rhm_A Putative kinase; P-loop 97.4 7E-05 2.4E-09 61.2 3.5 25 2-26 5-29 (193)
391 2iyv_A Shikimate kinase, SK; t 97.4 5.1E-05 1.8E-09 61.8 2.5 26 1-26 1-26 (184)
392 3mca_A HBS1, elongation factor 97.4 5.8E-05 2E-09 73.6 3.3 22 3-24 178-199 (592)
393 1kht_A Adenylate kinase; phosp 97.4 7.7E-05 2.6E-09 60.7 3.4 26 2-27 3-28 (192)
394 2qgz_A Helicase loader, putati 97.4 0.00021 7.1E-09 63.9 6.5 25 3-27 153-177 (308)
395 2bwj_A Adenylate kinase 5; pho 97.4 5.7E-05 2E-09 62.0 2.5 25 2-26 12-36 (199)
396 3qks_A DNA double-strand break 97.4 7.9E-05 2.7E-09 62.6 3.3 23 3-25 24-46 (203)
397 3r20_A Cytidylate kinase; stru 97.4 8.1E-05 2.8E-09 64.2 3.3 25 2-26 9-33 (233)
398 1nks_A Adenylate kinase; therm 97.4 9.3E-05 3.2E-09 60.2 3.4 25 3-27 2-26 (194)
399 2zej_A Dardarin, leucine-rich 97.4 8.4E-05 2.9E-09 60.5 3.1 24 3-26 3-26 (184)
400 3b9p_A CG5977-PA, isoform A; A 97.4 0.00039 1.3E-08 60.9 7.7 24 3-26 55-78 (297)
401 3trf_A Shikimate kinase, SK; a 97.4 9E-05 3.1E-09 60.3 3.3 25 2-26 5-29 (185)
402 3zvr_A Dynamin-1; hydrolase, D 97.4 0.0023 7.7E-08 64.1 13.9 78 98-181 149-233 (772)
403 2ze6_A Isopentenyl transferase 97.4 9.8E-05 3.3E-09 64.1 3.6 24 3-26 2-25 (253)
404 2plr_A DTMP kinase, probable t 97.4 0.00013 4.5E-09 60.3 4.2 31 2-33 4-34 (213)
405 1xzp_A Probable tRNA modificat 97.4 0.00011 3.7E-09 69.9 4.1 23 3-25 244-266 (482)
406 2jaq_A Deoxyguanosine kinase; 97.3 9.6E-05 3.3E-09 60.7 3.2 24 4-27 2-25 (205)
407 2xex_A Elongation factor G; GT 97.3 0.00098 3.4E-08 66.0 11.0 42 210-251 240-281 (693)
408 4a1f_A DNAB helicase, replicat 97.3 0.00025 8.6E-09 64.4 6.2 36 4-39 48-83 (338)
409 1ltq_A Polynucleotide kinase; 97.3 0.00012 4E-09 64.5 3.8 24 1-24 1-24 (301)
410 1svm_A Large T antigen; AAA+ f 97.3 0.0001 3.4E-09 68.1 3.2 30 3-35 170-199 (377)
411 1uj2_A Uridine-cytidine kinase 97.3 0.00014 4.8E-09 62.7 3.7 26 2-27 22-47 (252)
412 3nwj_A ATSK2; P loop, shikimat 97.3 0.0001 3.5E-09 64.2 2.8 25 2-26 48-72 (250)
413 3d3q_A TRNA delta(2)-isopenten 97.3 0.00017 5.8E-09 65.6 4.4 27 1-27 6-32 (340)
414 2cdn_A Adenylate kinase; phosp 97.3 0.00014 4.7E-09 60.3 3.5 25 2-26 20-44 (201)
415 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00012 4.1E-09 67.9 3.4 24 2-25 22-45 (396)
416 2v54_A DTMP kinase, thymidylat 97.3 0.00015 5.1E-09 59.8 3.6 25 2-26 4-28 (204)
417 3auy_A DNA double-strand break 97.3 0.00038 1.3E-08 63.6 6.6 45 88-136 296-342 (371)
418 1ypw_A Transitional endoplasmi 97.3 0.0004 1.4E-08 70.0 7.3 25 3-27 239-263 (806)
419 3co5_A Putative two-component 97.3 0.00051 1.8E-08 54.0 6.3 42 98-140 75-116 (143)
420 1gvn_B Zeta; postsegregational 97.2 0.00014 4.6E-09 64.5 3.2 25 2-26 33-57 (287)
421 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0018 6E-08 55.3 10.2 24 3-26 40-63 (262)
422 2rdo_7 EF-G, elongation factor 97.2 0.0034 1.2E-07 62.3 13.6 29 221-249 259-287 (704)
423 1q3t_A Cytidylate kinase; nucl 97.2 0.00015 5E-09 61.9 3.3 25 2-26 16-40 (236)
424 4dkx_A RAS-related protein RAB 97.2 0.0017 5.7E-08 54.9 9.8 114 100-251 63-177 (216)
425 1y63_A LMAJ004144AAA protein; 97.2 0.00016 5.4E-09 59.3 3.3 23 3-25 11-33 (184)
426 2c95_A Adenylate kinase 1; tra 97.2 0.00015 5.3E-09 59.2 3.2 25 2-26 9-33 (196)
427 1sxj_D Activator 1 41 kDa subu 97.2 0.00023 7.9E-09 63.5 4.5 23 5-27 61-83 (353)
428 2wwf_A Thymidilate kinase, put 97.2 0.00016 5.6E-09 59.9 3.3 26 2-27 10-35 (212)
429 2z0h_A DTMP kinase, thymidylat 97.2 0.00016 5.5E-09 59.1 3.2 25 4-28 2-26 (197)
430 3m6a_A ATP-dependent protease 97.2 8.3E-05 2.8E-09 71.7 1.6 35 3-37 109-143 (543)
431 1ukz_A Uridylate kinase; trans 97.2 0.00019 6.5E-09 59.3 3.6 25 2-26 15-39 (203)
432 1jal_A YCHF protein; nucleotid 97.2 0.00025 8.7E-09 65.0 4.7 25 1-25 1-25 (363)
433 3sr0_A Adenylate kinase; phosp 97.2 0.00017 5.7E-09 61.0 3.2 23 4-26 2-24 (206)
434 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00015 5E-09 66.7 2.8 34 4-37 37-70 (392)
435 1ex7_A Guanylate kinase; subst 97.2 0.00018 6.2E-09 59.9 3.1 22 5-26 4-25 (186)
436 3fb4_A Adenylate kinase; psych 97.2 0.00019 6.4E-09 60.0 3.2 23 4-26 2-24 (216)
437 2vli_A Antibiotic resistance p 97.2 0.00012 4.2E-09 59.2 1.9 25 2-26 5-29 (183)
438 3umf_A Adenylate kinase; rossm 97.1 0.00025 8.4E-09 60.5 3.7 24 3-26 30-53 (217)
439 2pbr_A DTMP kinase, thymidylat 97.1 0.00021 7.3E-09 58.1 3.2 24 4-27 2-25 (195)
440 3dl0_A Adenylate kinase; phosp 97.1 0.00022 7.4E-09 59.6 3.2 23 4-26 2-24 (216)
441 1zak_A Adenylate kinase; ATP:A 97.1 0.00019 6.4E-09 60.5 2.7 25 2-26 5-29 (222)
442 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0003 1E-08 67.2 4.4 36 3-40 65-100 (499)
443 3iij_A Coilin-interacting nucl 97.1 0.00022 7.4E-09 57.9 2.9 24 3-26 12-35 (180)
444 3tlx_A Adenylate kinase 2; str 97.1 0.00027 9.2E-09 60.8 3.7 25 2-26 29-53 (243)
445 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.004 1.4E-07 55.7 11.5 24 3-26 46-69 (322)
446 1zd8_A GTP:AMP phosphotransfer 97.1 0.00024 8.1E-09 60.1 3.2 24 3-26 8-31 (227)
447 2wsm_A Hydrogenase expression/ 97.1 0.00033 1.1E-08 58.4 4.0 178 3-250 31-214 (221)
448 1sxj_C Activator 1 40 kDa subu 97.1 9.1E-05 3.1E-09 66.6 0.5 35 5-39 49-83 (340)
449 2grj_A Dephospho-COA kinase; T 97.1 0.00028 9.5E-09 58.9 3.4 23 3-25 13-35 (192)
450 2h5e_A Peptide chain release f 97.1 0.00086 2.9E-08 64.4 7.3 30 221-250 249-278 (529)
451 1aky_A Adenylate kinase; ATP:A 97.1 0.00027 9.4E-09 59.3 3.4 24 3-26 5-28 (220)
452 2f6r_A COA synthase, bifunctio 97.1 0.00027 9.3E-09 62.2 3.4 23 2-24 75-97 (281)
453 1lv7_A FTSH; alpha/beta domain 97.1 0.00028 9.5E-09 60.7 3.3 25 3-27 46-70 (257)
454 1nn5_A Similar to deoxythymidy 97.1 0.00027 9.2E-09 58.6 3.1 26 2-27 9-34 (215)
455 3kjh_A CO dehydrogenase/acetyl 97.1 0.00087 3E-08 56.6 6.4 37 5-41 3-39 (254)
456 2pt5_A Shikimate kinase, SK; a 97.0 0.00033 1.1E-08 55.9 3.3 23 4-26 2-24 (168)
457 1w1w_A Structural maintenance 97.0 0.00097 3.3E-08 62.0 6.9 27 3-29 27-53 (430)
458 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00041 1.4E-08 60.2 3.8 26 2-27 4-29 (260)
459 3bh0_A DNAB-like replicative h 97.0 0.013 4.6E-07 52.1 13.9 37 3-39 69-105 (315)
460 2i1q_A DNA repair and recombin 97.0 0.004 1.4E-07 55.4 10.4 22 3-24 99-120 (322)
461 3io5_A Recombination and repai 97.0 0.0022 7.4E-08 57.9 8.5 90 4-110 30-123 (333)
462 2xb4_A Adenylate kinase; ATP-b 97.0 0.00039 1.3E-08 58.8 3.3 23 4-26 2-24 (223)
463 3crm_A TRNA delta(2)-isopenten 97.0 0.00043 1.5E-08 62.5 3.7 27 1-27 4-30 (323)
464 1zuh_A Shikimate kinase; alpha 97.0 0.00041 1.4E-08 55.5 3.3 24 3-26 8-31 (168)
465 2b8t_A Thymidine kinase; deoxy 96.9 0.0031 1.1E-07 53.8 8.6 34 3-36 13-46 (223)
466 2o5v_A DNA replication and rep 96.9 0.00078 2.7E-08 61.7 5.1 21 4-24 28-48 (359)
467 1a7j_A Phosphoribulokinase; tr 96.9 0.00011 3.8E-09 65.2 -0.5 38 2-39 5-42 (290)
468 2r2a_A Uncharacterized protein 96.9 0.00066 2.2E-08 57.0 3.9 22 1-22 4-25 (199)
469 1e4v_A Adenylate kinase; trans 96.9 0.00047 1.6E-08 57.6 3.0 23 4-26 2-24 (214)
470 3be4_A Adenylate kinase; malar 96.9 0.00053 1.8E-08 57.6 3.2 24 3-26 6-29 (217)
471 2xau_A PRE-mRNA-splicing facto 96.9 0.0016 5.5E-08 65.3 7.1 24 4-27 111-134 (773)
472 2h92_A Cytidylate kinase; ross 96.9 0.00047 1.6E-08 57.6 2.8 25 2-26 3-27 (219)
473 3cmu_A Protein RECA, recombina 96.8 0.0029 9.9E-08 69.1 9.4 119 3-139 1428-1563(2050)
474 1g16_A RAS-related protein SEC 96.8 0.00062 2.1E-08 53.5 3.0 26 224-249 139-164 (170)
475 1g3q_A MIND ATPase, cell divis 96.8 0.0012 4.2E-08 55.5 5.0 42 1-42 1-43 (237)
476 4dzz_A Plasmid partitioning pr 96.8 0.0029 9.8E-08 51.9 7.0 40 1-41 1-41 (206)
477 3tw8_B RAS-related protein RAB 96.8 0.00068 2.3E-08 53.9 3.0 27 224-250 145-171 (181)
478 2q6t_A DNAB replication FORK h 96.8 0.015 5E-07 54.3 12.7 37 3-39 201-238 (444)
479 1ak2_A Adenylate kinase isoenz 96.8 0.00075 2.6E-08 57.3 3.4 24 3-26 17-40 (233)
480 2hf9_A Probable hydrogenase ni 96.8 0.00078 2.7E-08 56.3 3.5 38 2-40 38-75 (226)
481 3auy_A DNA double-strand break 96.8 0.00064 2.2E-08 62.1 3.1 21 3-23 26-46 (371)
482 4b4t_J 26S protease regulatory 96.7 0.013 4.4E-07 54.4 11.8 26 2-27 182-207 (405)
483 2zts_A Putative uncharacterize 96.7 0.0014 4.7E-08 55.3 4.6 37 3-39 31-68 (251)
484 3cf0_A Transitional endoplasmi 96.7 0.00089 3E-08 59.2 3.2 25 3-27 50-74 (301)
485 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0041 1.4E-07 56.2 7.5 22 4-25 125-146 (331)
486 3q9l_A Septum site-determining 96.6 0.0021 7.1E-08 54.8 5.1 42 1-42 1-43 (260)
487 2bme_A RAB4A, RAS-related prot 96.6 0.0011 3.6E-08 53.3 3.0 60 163-249 113-172 (186)
488 1jbk_A CLPB protein; beta barr 96.6 0.0012 4.1E-08 52.7 3.3 24 4-27 45-68 (195)
489 3foz_A TRNA delta(2)-isopenten 96.6 0.0013 4.6E-08 59.0 3.7 25 2-26 10-34 (316)
490 1q57_A DNA primase/helicase; d 96.6 0.056 1.9E-06 51.1 15.2 37 3-39 243-280 (503)
491 4edh_A DTMP kinase, thymidylat 96.5 0.0013 4.3E-08 55.7 3.2 32 3-34 7-38 (213)
492 4hlc_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 54.6 3.7 33 1-34 1-33 (205)
493 3te6_A Regulatory protein SIR3 96.5 0.014 4.7E-07 52.5 9.9 25 3-27 46-70 (318)
494 4ad8_A DNA repair protein RECN 96.5 0.00047 1.6E-08 65.9 0.3 22 4-25 62-83 (517)
495 3ea0_A ATPase, para family; al 96.5 0.0032 1.1E-07 53.2 5.5 40 3-42 5-46 (245)
496 1x3s_A RAS-related protein RAB 96.5 0.0015 5.2E-08 52.6 3.2 28 224-251 152-179 (195)
497 1njg_A DNA polymerase III subu 96.5 0.0015 5.1E-08 54.0 3.2 24 4-27 47-70 (250)
498 2h17_A ADP-ribosylation factor 96.5 0.0014 4.8E-08 52.7 3.0 23 3-25 22-44 (181)
499 2dby_A GTP-binding protein; GD 96.5 0.0011 3.7E-08 60.9 2.5 23 3-25 2-24 (368)
500 3cio_A ETK, tyrosine-protein k 96.5 0.009 3.1E-07 52.9 8.5 40 3-42 105-145 (299)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=9.5e-26 Score=208.26 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=108.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC----------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~----------~~~~y-------~~~~~i~~~i~------- 58 (268)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..++| .+.+||++++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999987632 22333 44678888874
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
+.++++.+||.+. .+.++.++ +++|||||+. +|++||+||||+ ||+.++..++ ++
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~------~~~~~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~l 205 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDK------HDSYPSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-EL 205 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGG------TTCCTTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HH
Confidence 5678899999764 23444333 3999999999 999999999999 9999999998 99
Q ss_pred HHHHHh-CCCeEEEEEecccccccCHHHHHH
Q 024360 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (268)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (268)
++++++ .|.++++| +|.+.....+|+
T Consensus 206 L~~l~~~~g~Tii~v----THdl~~~~~~aD 232 (366)
T 3tui_C 206 LKDINRRLGLTILLI----THEMDVVKRICD 232 (366)
T ss_dssp HHHHHHHSCCEEEEE----ESCHHHHHHHCS
T ss_pred HHHHHHhCCCEEEEE----ecCHHHHHHhCC
Confidence 999975 48888766 466554445543
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=3.7e-25 Score=191.77 Aligned_cols=125 Identities=20% Similarity=0.188 Sum_probs=99.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 4789999999999999999999999999999999976521 12333 33567887763
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
+.++++.+++.+.. +..+.++ +++||++|+. +|+++||||||+ ||+.++..++ +
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~ 181 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKL------SRKPYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-D 181 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCT------TCCGGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHcCCchhh------hCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 35678888987652 3333333 3999999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEE
Q 024360 122 FVDHLKSRNFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (268)
++++++++|.+++++
T Consensus 182 ~l~~l~~~g~tvi~v 196 (224)
T 2pcj_A 182 IFLKINEGGTSIVMV 196 (224)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 899987668887666
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=2.9e-25 Score=193.78 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=98.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~y-------~~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| .+.+++++++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999976521 11333 34568888763
Q ss_pred -------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 -------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+.++++.+++.+.. .+..+.+ ++++||++|+. +|+++|+||||+ ||+.++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i 184 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERF-----ANHKPNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKI 184 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGG-----TTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhh-----hhCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34677788886531 1223332 33999999999 999999999999 999999998
Q ss_pred HHHHHHHHHhC-CCeEEEE
Q 024360 119 LRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~-~~~ii~v 136 (268)
+ +++++++++ |.++++|
T Consensus 185 ~-~~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 185 M-QLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp H-HHHHHHHHHHCCEEEEE
T ss_pred H-HHHHHHHHHcCCEEEEE
Confidence 8 899998754 8888766
No 4
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=2e-25 Score=195.52 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=98.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh-------------
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------- 58 (268)
+++|+||||||||||+++|+|+++|++|+|.++|.++. .+.++| .+.+++++++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 68999999999999999999999999999999997652 223444 23467877753
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-C
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~ 129 (268)
++++++.+++.+.. +..+.++ +++||++++. +|+++||||||+ ||+.++..++ ++++++++ .
T Consensus 106 ~~~~~l~~~~l~~~~------~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~ 176 (240)
T 2onk_A 106 RVREMAEKLGIAHLL------DRKPARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREF 176 (240)
T ss_dssp HHHHHHHTTTCTTTT------TCCGGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHh------cCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhc
Confidence 45678888887642 3333333 3999999999 999999999999 9999999988 88888864 3
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
|.+++++
T Consensus 177 g~tvi~v 183 (240)
T 2onk_A 177 DVPILHV 183 (240)
T ss_dssp TCCEEEE
T ss_pred CCEEEEE
Confidence 7888766
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=9.8e-26 Score=201.24 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=104.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-C-------cccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-P-------VAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-~-------~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .+.++| + ...++++++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999998762 112333 1 1357777764
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++++.+++... .+..+.++ +++||++|+. +|++|||||||+ ||+.++..++ ++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~ 185 (275)
T 3gfo_A 115 LPEDEIRKRVDNALKRTGIEHL------KDKPTHCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KL 185 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGG------TTSBGGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHcCCchh------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HH
Confidence 5678889998754 23333333 3999999999 999999999999 9999999988 89
Q ss_pred HHHHH-hCCCeEEEEEecccccccCHHHHH
Q 024360 123 VDHLK-SRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 123 l~~l~-~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+++++ ++|.+++++ +|.+.....++
T Consensus 186 l~~l~~~~g~tvi~v----tHdl~~~~~~~ 211 (275)
T 3gfo_A 186 LVEMQKELGITIIIA----THDIDIVPLYC 211 (275)
T ss_dssp HHHHHHHHCCEEEEE----ESCCSSGGGGC
T ss_pred HHHHHhhCCCEEEEE----ecCHHHHHHhC
Confidence 99987 558888766 35555444444
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=4.2e-25 Score=195.94 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=102.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-------CcccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-------~~~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999997652 011222 34567877653
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++++.+++.+. .+..+.+ ++++||++|+. +|+++||||||+ ||+.++..++ ++
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~ 201 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDK------AHAYPDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SV 201 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHCCCchH------hcCChhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 3457778888654 2333333 33999999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccCHHHH
Q 024360 123 VDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (268)
+++++++|.+++++ +|.+.....+
T Consensus 202 l~~l~~~g~tvi~v----tHd~~~~~~~ 225 (263)
T 2olj_A 202 MKQLANEGMTMVVV----THEMGFAREV 225 (263)
T ss_dssp HHHHHHTTCEEEEE----CSCHHHHHHH
T ss_pred HHHHHhCCCEEEEE----cCCHHHHHHh
Confidence 99987668887665 4655433333
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=5.3e-25 Score=202.98 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=105.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc---------CCCCCC-------CcccChhhhhh--------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS-------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~---------~~~~~y-------~~~~~i~~~i~-------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+||++++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999997651 123333 45678988874
Q ss_pred --------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
++++++.++|.+. .++.+.++ +++|||||+. +|++||||||++ ||+..+..+. ..+
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l 181 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISEL------AGRYPHELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDM 181 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGG------TTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 6788999999765 24444433 3999999999 999999999999 9999998888 555
Q ss_pred HHH-HhCCCeEEEEEecccccccCHHHHH
Q 024360 124 DHL-KSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 124 ~~l-~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
.++ ++.|.++++| +|...+...++
T Consensus 182 ~~~~~~~g~tvi~v----THd~~ea~~~a 206 (359)
T 3fvq_A 182 IAALRANGKSAVFV----SHDREEALQYA 206 (359)
T ss_dssp HHHHHHTTCEEEEE----CCCHHHHHHHC
T ss_pred HHHHHhCCCEEEEE----eCCHHHHHHHC
Confidence 554 5568888766 46655444443
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=3.4e-25 Score=195.78 Aligned_cols=125 Identities=16% Similarity=0.226 Sum_probs=99.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC------CCCCC-------CcccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~------~~~~y-------~~~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| .+.+++++++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 4789999999999999999999999999999999976531 12333 34567887764
Q ss_pred -----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 -----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++.+. .+..+.++ +++||++|+. +|+++||||||+ ||+.++..++ ++++++
T Consensus 122 ~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l 192 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEK------IKDRVSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQA 192 (256)
T ss_dssp HHHHHHHHHHHHHCCGGG------GGSBGGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCchH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHH
Confidence 3467788888654 23333333 3999999999 999999999999 9999999988 889988
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
+++|.+++++
T Consensus 193 ~~~g~tiiiv 202 (256)
T 1vpl_A 193 SQEGLTILVS 202 (256)
T ss_dssp HHTTCEEEEE
T ss_pred HhCCCEEEEE
Confidence 7667787665
No 9
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=4.9e-25 Score=204.58 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=107.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCC-------CCCcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~-------~y~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+|+|+|+++|++|+|.+.|.+... +.+ ..++.+||++++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999976521 222 2356788998875
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.+++.+. .+..+.++ +++|||+|+. +|++||||||++ ||+..+..+. +++++++
T Consensus 110 ~~~~v~~~l~~~~L~~~------~~r~p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~ 180 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLH 180 (381)
T ss_dssp HHHHHHHHHHHTTCGGG------TTCCGGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCchh------hcCChhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHH
Confidence 5678889999765 24444433 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEEEecccccccCHHHHH
Q 024360 128 SR-NFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
++ |.++|+| +|...+...++
T Consensus 181 ~~~g~tii~v----THd~~ea~~~a 201 (381)
T 3rlf_A 181 KRLGRTMIYV----THDQVEAMTLA 201 (381)
T ss_dssp HHHCCEEEEE----CSCHHHHHHHC
T ss_pred HhCCCEEEEE----ECCHHHHHHhC
Confidence 54 8888766 46655444443
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=5.6e-25 Score=194.98 Aligned_cols=136 Identities=16% Similarity=0.177 Sum_probs=102.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--------------------CCCCCC-------CcccChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--------------------~~~~~y-------~~~~~i~~ 55 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++. ...++| ++.+++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 478999999999999999999999999999999997653 011222 34567877
Q ss_pred hhh-----------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CC
Q 024360 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (268)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD 111 (268)
++. +.++++.+++.+.. .+..+.+ ++++||++|+. +|+++||||||+ ||
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD 185 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALD 185 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH-----HTSCGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSC
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCC
Confidence 654 34567778875430 1223333 23999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHH
Q 024360 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (268)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (268)
+.++..++ +++++++++|.+++++ +|.+.....+
T Consensus 186 ~~~~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~ 219 (262)
T 1b0u_A 186 PELVGEVL-RIMQQLAEEGKTMVVV----THEMGFARHV 219 (262)
T ss_dssp HHHHHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHh
Confidence 99999988 8899987668888766 4655433333
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=6.1e-25 Score=192.25 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=95.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 112 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence 4789999999999999999999999999999999976521 12333 23457777653
Q ss_pred ------HHHHHHHhC-CCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 ------LEDVMEELG-LGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 ------~~~~m~~~~-L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
++++++.++ +... .+..+.+ ++++||++|+. +|+++||||||+ ||+.++..++ ++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~------~~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~ 183 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKER------LKQLGGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQ 183 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTT------TTSBSSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHcccHhhH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 345556663 6433 1222222 33999999999 999999999999 9999999988 8889
Q ss_pred HHHhCCCeEEEE
Q 024360 125 HLKSRNFNVCAV 136 (268)
Q Consensus 125 ~l~~~~~~ii~v 136 (268)
++++.|.+++++
T Consensus 184 ~~~~~g~tvi~v 195 (240)
T 1ji0_A 184 KINQEGTTILLV 195 (240)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHCCCEEEEE
Confidence 887667887766
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=1.3e-24 Score=191.97 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=100.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~--------- 58 (268)
.+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 4789999999999999999999999999999999976521 12333 22344444321
Q ss_pred --------------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CC
Q 024360 59 --------------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (268)
Q Consensus 59 --------------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD 111 (268)
+.++++.+++.+. .+..+.+ ++++||++|+. +|+++||||||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD 185 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL------YDRKAGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVA 185 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG------TTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchh------hCCCchhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCC
Confidence 3456777777643 2333333 33999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHH
Q 024360 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (268)
Q Consensus 112 ~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (268)
+.++..++ +++++++++|.+++++ +|.+.....++
T Consensus 186 ~~~~~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~ 220 (257)
T 1g6h_A 186 PGLAHDIF-NHVLELKAKGITFLII----EHRLDIVLNYI 220 (257)
T ss_dssp HHHHHHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGC
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhC
Confidence 99999988 8899987668887666 35554443333
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.8e-24 Score=192.18 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=111.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--------------CCCCCCcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--------------~~~~y~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.....+.+++++++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 4789999999999999999999999999999999987532 1111233567887763
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcC----CCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~----~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
++++++.+++.... +..+.+ ++++||++|+.. .+|++||+||||+ ||+.++..++ +++
T Consensus 118 ~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l 190 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALA------QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLL 190 (266)
T ss_dssp HHHHHHHHHHHTTCSTTT------TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHcCChhHh------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHH
Confidence 57788999997652 333333 339999999851 1799999999999 9999999988 899
Q ss_pred HHHHhC-CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccC
Q 024360 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (268)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~ 179 (268)
++++++ +.+++++ +|.+.....+++ .+-++.+..++.
T Consensus 191 ~~l~~~~~~tvi~v----tHdl~~~~~~~d---------------~v~vl~~G~i~~ 228 (266)
T 4g1u_C 191 RQLTRQEPLAVCCV----LHDLNLAALYAD---------------RIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHSSEEEEEE----CSCHHHHHHHCS---------------EEEEEETTEEEE
T ss_pred HHHHHcCCCEEEEE----EcCHHHHHHhCC---------------EEEEEECCEEEE
Confidence 998754 4577655 466554444442 555676665543
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=1.3e-24 Score=200.16 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=103.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+|+++++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999999999999999997642 223333 45678888864
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.++|.+. .++.+.++ +++||++|+. +|+++|||||++ ||+..+..+. +++++++
T Consensus 122 ~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 192 (355)
T 1z47_A 122 MDARVRELLRFMRLESY------ANRFPHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVH 192 (355)
T ss_dssp HHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhH------hcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 4567888898764 23444333 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEEEecccccccCH
Q 024360 128 SR-NFNVCAVYLLDSQFITDV 147 (268)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~ 147 (268)
++ |.++++| +|...+.
T Consensus 193 ~~~g~tvi~v----THd~~~a 209 (355)
T 1z47_A 193 DEMGVTSVFV----THDQEEA 209 (355)
T ss_dssp HHHTCEEEEE----CSCHHHH
T ss_pred HhcCCEEEEE----CCCHHHH
Confidence 54 7888766 4554433
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=2.4e-24 Score=198.05 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=100.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----CCCC-------CCcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----~~~~-------y~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... +.++ .++.+|+++++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999976521 2232 245678988864
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-C
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~ 129 (268)
+.++++.++|.+. .++.+.++ +++|||+|+. +|+++|||||++ ||+..+..+. ++++++++ .
T Consensus 107 ~v~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~ 177 (348)
T 3d31_A 107 RVLDTARDLKIEHL------LDRNPLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKN 177 (348)
T ss_dssp HHHHHHHHTTCTTT------TTSCGGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhc
Confidence 3568888999765 24444333 3999999999 999999999999 9999998888 88888864 4
Q ss_pred CCeEEEE
Q 024360 130 NFNVCAV 136 (268)
Q Consensus 130 ~~~ii~v 136 (268)
|.++++|
T Consensus 178 g~tii~v 184 (348)
T 3d31_A 178 KLTVLHI 184 (348)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 7888766
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=1.7e-24 Score=199.85 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=100.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+|+++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 468999999999999999999999999999999997642 222322 45678888764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.++|.+. .++.+.++ +++|||+|+. +|+++|||||++ ||+..+..+. +.++++.
T Consensus 110 ~~~~v~~~l~~~~L~~~------~~r~~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 180 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNL------LDRKPTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQ 180 (359)
T ss_dssp TTHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence 5678889999765 23444333 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ |.++++|
T Consensus 181 ~~~g~tvi~v 190 (359)
T 2yyz_A 181 QELGITSVYV 190 (359)
T ss_dssp HHHCCEEEEE
T ss_pred HhcCCEEEEE
Confidence 54 7887766
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.1e-24 Score=199.39 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=100.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 468999999999999999999999999999999997642 222332 45678888864
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.++|.+.. ++.+.++ +++|||+|+. +|+++|||||++ ||+..+..+. +.++++.
T Consensus 110 ~~~~v~~~l~~~~L~~~~------~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 180 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLL------NRYPWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQ 180 (362)
T ss_dssp HHHHHHHHHHHTTCTTCT------TCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCchHh------hCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHH
Confidence 45788889997652 4444333 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ |.++++|
T Consensus 181 ~~~g~tvi~v 190 (362)
T 2it1_A 181 KELGITTVYV 190 (362)
T ss_dssp HHHTCEEEEE
T ss_pred HhCCCEEEEE
Confidence 54 7887766
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=1.4e-24 Score=200.03 Aligned_cols=125 Identities=19% Similarity=0.209 Sum_probs=99.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----------CCCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----------~~~~~y-------~~~~~i~~~i~------- 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999886531 222332 45678888764
Q ss_pred ---------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 59 ---------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++++.++|.+. .++.+.++ +++||++|+. +|+++|||||++ ||+..+..+. ++
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~------~~~~~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~ 182 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHV------LNHFPRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-AL 182 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence 5678888999764 23334333 3999999999 999999999999 9999998888 88
Q ss_pred HHHHHh-CCCeEEEE
Q 024360 123 VDHLKS-RNFNVCAV 136 (268)
Q Consensus 123 l~~l~~-~~~~ii~v 136 (268)
++++.+ .|.++++|
T Consensus 183 l~~l~~~~g~tvi~v 197 (353)
T 1oxx_K 183 VKEVQSRLGVTLLVV 197 (353)
T ss_dssp HHHHHHHHCCEEEEE
T ss_pred HHHHHHhcCCEEEEE
Confidence 888864 37888766
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=2.5e-24 Score=199.55 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----CCCCCC-------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----~~~~~y-------~~~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+|+++++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 478999999999999999999999999999999997642 222333 45678888764
Q ss_pred ----HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 59 ----~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
++++++.++|.+. .++.+.++ +++||++|+. +|+++|||||++ ||+..+..+. +.+++++
T Consensus 118 ~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~ 188 (372)
T 1v43_A 118 IDKRVRWAAELLQIEEL------LNRYPAQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQ 188 (372)
T ss_dssp HHHHHHHHHHHTTCGGG------TTSCTTTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHH
Confidence 4678888998754 24444333 3999999999 999999999999 9999998888 8888886
Q ss_pred hC-CCeEEEE
Q 024360 128 SR-NFNVCAV 136 (268)
Q Consensus 128 ~~-~~~ii~v 136 (268)
++ |.++|+|
T Consensus 189 ~~~g~tvi~v 198 (372)
T 1v43_A 189 QKLKVTTIYV 198 (372)
T ss_dssp HHHTCEEEEE
T ss_pred HhCCCEEEEE
Confidence 54 7887766
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=2.5e-24 Score=199.72 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=99.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc-----------CCCCCC-------CcccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~-----------~~~~~y-------~~~~~i~~~i~------ 58 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.++| ++.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999999999999999886531 222333 45678888864
Q ss_pred ----------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHH
Q 024360 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (268)
Q Consensus 59 ----------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ 121 (268)
++++++.++|.+. .++.+.++ +++||++|+. +|+++|||||++ ||+..+..+. +
T Consensus 110 ~~~~~~~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~ 180 (372)
T 1g29_1 110 KVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-A 180 (372)
T ss_dssp TCCHHHHHHHHHHHHHHHTCGGG------TTCCGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHCCCchH------hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-H
Confidence 4567888998764 23333333 3999999999 999999999999 9999998888 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 024360 122 FVDHLKSR-NFNVCAV 136 (268)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (268)
+++++.++ |.++++|
T Consensus 181 ~l~~l~~~~g~tvi~v 196 (372)
T 1g29_1 181 ELKKLQRQLGVTTIYV 196 (372)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCEEEEE
Confidence 88888654 7888766
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=2.7e-24 Score=190.96 Aligned_cols=125 Identities=20% Similarity=0.180 Sum_probs=97.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----CCCCCC--------CcccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY--------PVAMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----~~~~~y--------~~~~~i~~~i~------------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...++| .+..++++++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 113 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP 113 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence 478999999999999999999999999999999997652 122222 12357777653
Q ss_pred ---HHHHHHHhCCC--CCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 ---LEDVMEELGLG--PNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ---~~~~m~~~~L~--~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+|+. +. .+..+.+ ++++||++|+. +|+++||||||+ ||+.++..++ ++++++
T Consensus 114 ~~~~~~~l~~~gl~~~~~------~~~~~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l 184 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSF------KDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKW 184 (266)
T ss_dssp HHHHHHHHHHTTCCHHHH------TTCCGGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCcCCccc------ccCChhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHH
Confidence 45678888887 43 1333333 23999999999 999999999999 9999999988 889998
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
+++|.+++++
T Consensus 185 ~~~g~tii~v 194 (266)
T 2yz2_A 185 KTLGKTVILI 194 (266)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCEEEEE
Confidence 7667787666
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=9.3e-24 Score=181.92 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=97.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--CCCCCC-------CcccChhhhhh--------------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------PVAMDIRELIS--------------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~~~~~y-------~~~~~i~~~i~--------------~ 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+.+++++++. +
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 368999999999999999999999999999999997641 122222 34567777653 3
Q ss_pred HHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.++++.+++... ... ..+... +.++++||++|+. +|+++||||||+ ||+.++..++ +++++++++|.+++++
T Consensus 116 ~~~l~~~gl~~~-~~~-~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 116 MDALESVEVLDL-KKK-LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS 189 (214)
T ss_dssp HHHHHHTTCCCT-TSB-GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred HHHHHHcCCCcC-CCC-hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 467788888654 211 112222 2234999999999 999999999999 9999999988 8888887557777655
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=3.4e-24 Score=191.60 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=96.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc--C-------CCCCC-C--------cccChhhhhh------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY-P--------VAMDIRELIS------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~--~-------~~~~y-~--------~~~~i~~~i~------ 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.++. . +.+.| + ..+++++++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 468999999999999999999999999999999997754 1 22333 1 1236776652
Q ss_pred --------------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 --------------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++.+. .+..+.+ ++++||++|+. +|+++||||||+ ||+.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAK------AQQYIGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGG------TTSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHH
Confidence 3456778888654 2333333 33999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeE--EEE
Q 024360 118 VLRNFVDHLKSRNFNV--CAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~i--i~v 136 (268)
++ +++++++++|.++ +++
T Consensus 200 l~-~~l~~l~~~g~tv~~iiv 219 (279)
T 2ihy_A 200 LL-SILDSLSDSYPTLAMIYV 219 (279)
T ss_dssp HH-HHHHHHHHHCTTCEEEEE
T ss_pred HH-HHHHHHHHCCCEEEEEEE
Confidence 88 8888886557777 655
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=5.5e-24 Score=187.32 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=97.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-------CcccChhhhhh----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-------~~~~~i~~~i~---------- 58 (268)
.+++|+||||||||||+++|+|+++|+ |+|.+.|.+... +.+.| .+.+++++++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE 105 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence 468999999999999999999999999 999999976421 11222 33567777754
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCC-------EEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~-------~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++.+.. +..+.+ ++++||++|+. +|+ ++||||||+ ||+.++..+. +++
T Consensus 106 ~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l 176 (249)
T 2qi9_C 106 LLNDVAGALALDDKL------GRSTNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KIL 176 (249)
T ss_dssp HHHHHHHHTTCGGGT------TSBGGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHH
T ss_pred HHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHH
Confidence 46788888886542 233333 23999999999 999 999999999 9999999988 889
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
++++++|.+++++
T Consensus 177 ~~l~~~g~tviiv 189 (249)
T 2qi9_C 177 SALSQQGLAIVMS 189 (249)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHhCCCEEEEE
Confidence 9887667787655
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2e-23 Score=183.74 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=95.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC--CCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~--l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+ ++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 47899999999999999999998 78999999999976521 12333 22456666542
Q ss_pred ------------HHHHHHHhCCC-CCCChhhhHhhhhhh-HH------HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHH
Q 024360 59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDN-LD------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (268)
Q Consensus 59 ------------~~~~m~~~~L~-~~g~~~~~~~~~~~~-ls------~~la~al~~~~~p~~lilDEP~~-LD~~~~~~ 117 (268)
+.++++.+++. .. .+..+.+ +| ++||++|+. +|+++||||||+ ||+.++..
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~ 181 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESY------LSRYLNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKV 181 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGG------GGSBTTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhH------hcCCcccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHH
Confidence 34567777884 33 2333333 44 999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 024360 118 VLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 118 i~~~ll~~l~~~~~~ii~v 136 (268)
++ +++++++++|.+++++
T Consensus 182 l~-~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 182 VA-RGVNAMRGPNFGALVI 199 (250)
T ss_dssp HH-HHHHHHCSTTCEEEEE
T ss_pred HH-HHHHHHHhcCCEEEEE
Confidence 88 8899886667777665
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=3.3e-23 Score=182.73 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=91.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc-CCcCCCCCCCcccChhhhh--------------------hHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SLED 61 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~-d~~~~~~~y~~~~~i~~~i--------------------~~~~ 61 (268)
.+++|+||||||||||+++|+|+++|++|+|.+... ....+...+.+..++++++ .+++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 468999999999999999999999999999974210 0001111122234444433 2456
Q ss_pred HHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeE
Q 024360 62 VMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNV 133 (268)
Q Consensus 62 ~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~i 133 (268)
+++.+++.+.. +..+.+ ++++||++|+. +|+++||||||+ ||+.++..++ +++++++++ |.++
T Consensus 112 ~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tv 182 (253)
T 2nq2_C 112 ALDYLNLTHLA------KREFTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTV 182 (253)
T ss_dssp HHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEE
T ss_pred HHHHcCChHHh------cCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 78888886542 333333 23999999999 999999999999 9999999988 888888765 7787
Q ss_pred EEE
Q 024360 134 CAV 136 (268)
Q Consensus 134 i~v 136 (268)
+++
T Consensus 183 i~v 185 (253)
T 2nq2_C 183 VFT 185 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=5.2e-23 Score=180.79 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=93.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..++++++. +
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence 4789999999999999999999999999999999976532 12222 11 247777764 3
Q ss_pred HHHHHHhCCCCCC-----ChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++.+++.... ++...+ ..+. +.++++||++|+. +|+++||||||+ ||+.++..++ +++++++
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 192 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC 192 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 4556666664210 000000 1111 1233999999999 999999999999 9999999988 8888885
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+|.+++++
T Consensus 193 -~g~tviiv 200 (247)
T 2ff7_A 193 -KGRTVIII 200 (247)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 47777666
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.2e-22 Score=180.10 Aligned_cols=120 Identities=14% Similarity=0.251 Sum_probs=93.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc----CCCCC-C-Cc----ccChhhhhh------------HHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED 61 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~----~~~~~-y-~~----~~~i~~~i~------------~~~ 61 (268)
+++|+||||||||||+++|+|++ |++|+|.+.|.+.. .+.+. | ++ ..++++++. +.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 68999999999999999999999 99999999987542 23455 5 22 457777764 456
Q ss_pred HHHHhCCC-CCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 62 VMEELGLG-PNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 62 ~m~~~~L~-~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
+++.+++. .. ++..+.++ +++||++|+. +|+++||||||+ ||+.++..+. ++++++++ ++
T Consensus 111 ~l~~~gl~~~~------~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tv 178 (263)
T 2pjz_A 111 MLKALKLGEEI------LRRKLYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EG 178 (263)
T ss_dssp HHHHTTCCGGG------GGSBGGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EE
T ss_pred HHHHcCCChhH------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cE
Confidence 78888887 43 23333333 3999999999 999999999999 9999998888 77777643 66
Q ss_pred EEE
Q 024360 134 CAV 136 (268)
Q Consensus 134 i~v 136 (268)
+++
T Consensus 179 iiv 181 (263)
T 2pjz_A 179 ILV 181 (263)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.88 E-value=1.2e-22 Score=180.83 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=90.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhhH----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~~---------- 59 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence 4789999999999999999999999999999999976521 12222 11 2367776542
Q ss_pred ----------HHHHHHh--CCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 60 ----------~~~m~~~--~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
.++++.+ |+... ++..+.+ ++++||++|+. +|+++||||||+ ||+.++..++
T Consensus 126 ~~~~~~~~~~~~~l~~l~~gl~~~------~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~- 196 (271)
T 2ixe_A 126 ITAVAMESGAHDFISGFPQGYDTE------VGETGNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ- 196 (271)
T ss_dssp HHHHHHHHTCHHHHHHSTTGGGSB------CCGGGTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-
T ss_pred HHHHHHHHhHHHHHHhhhcchhhh------hcCCcCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-
Confidence 1223333 33222 1222222 33999999999 999999999999 9999998888
Q ss_pred HHHHHHHh-CCCeEEEE
Q 024360 121 NFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~-~~~~ii~v 136 (268)
++++++.+ .|.++|++
T Consensus 197 ~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 197 RLLYESPEWASRTVLLI 213 (271)
T ss_dssp HHHHHCTTTTTSEEEEE
T ss_pred HHHHHHHhhcCCEEEEE
Confidence 88888854 47777665
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.87 E-value=1.6e-22 Score=177.14 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=95.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~ 108 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence 4789999999999999999999999999999999976521 23444 22 236777653
Q ss_pred HHHHHHHhCCCCCCChh-----hhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGPNGGLI-----YCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~-----~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++.+++....... ..++ .+. +.++++||++|+. +|+++||||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 185 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL 185 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 45677778876532100 0001 111 1233999999999 999999999999 9999999988 888888
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
+ +|.+++++
T Consensus 186 ~-~~~tvi~v 194 (243)
T 1mv5_A 186 M-KGRTTLVI 194 (243)
T ss_dssp H-TTSEEEEE
T ss_pred c-CCCEEEEE
Confidence 6 57787665
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.87 E-value=3.3e-22 Score=177.58 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=92.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC--CCCCCceEEEeccCCcC--------CCCCC-------CcccChhhhhh-------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~--l~~~~G~v~i~~~d~~~--------~~~~y-------~~~~~i~~~i~------- 58 (268)
.+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... ..+.| .+.+++++++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 47899999999999999999999 46899999999976421 11222 22334444321
Q ss_pred ----------------HHHHHHHhCCCC-CCChhhhHhhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 59 ----------------~~~~m~~~~L~~-~g~~~~~~~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
++++++.+++.. ... .+....+. ++++++||++|+. +|+++||||||+ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l 203 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLT-RSVNVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV 203 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTT-SBTTTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 346677788853 211 11111111 1234999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
+ +++++++++|.+++++
T Consensus 204 ~-~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 204 A-DGVNSLRDGKRSFIIV 220 (267)
T ss_dssp H-HHHHTTCCSSCEEEEE
T ss_pred H-HHHHHHHhcCCEEEEE
Confidence 8 8888886567777655
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=6.1e-22 Score=179.12 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=93.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~----------~ 59 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...||++++. +
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 4689999999999999999999999999999999987632 12333 1 1347888875 3
Q ss_pred HHHHHHhCCCCCC-----ChhhhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++..++...- ++-..+. .+. +.++++|||+|+. +|++|||||||+ ||+.+...+. +.++.+.
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~ 237 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC 237 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 4455555543210 0000000 111 2234999999999 999999999999 9999998888 8888886
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.++|+|
T Consensus 238 ~-~~Tvi~i 245 (306)
T 3nh6_A 238 A-NRTTIVV 245 (306)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 5 5677655
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=1.8e-21 Score=172.12 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=90.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
.+++|+||||||||||+++|+|++++ +|+|.++|.+... +.+.| ++ ..++++++. +
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence 47899999999999999999999987 8999999976521 22333 11 247777764 2
Q ss_pred HHHHHHhCCCCCC-----ChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGPNG-----GLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 60 ~~~m~~~~L~~~g-----~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
.++++.+++.... +.-..+ ..+. +.++++||++|+. +|+++||||||+ ||+.++..++ +++++++
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~ 202 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR 202 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence 3445555542210 000000 1111 1233999999999 999999999999 9999998888 8888885
Q ss_pred hCCCeEEEE
Q 024360 128 SRNFNVCAV 136 (268)
Q Consensus 128 ~~~~~ii~v 136 (268)
+ +.+++++
T Consensus 203 ~-~~tviiv 210 (260)
T 2ghi_A 203 K-NRTLIII 210 (260)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 6777655
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.85 E-value=1.1e-21 Score=170.31 Aligned_cols=129 Identities=18% Similarity=0.117 Sum_probs=86.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhhH---------HHHHHHhCCCC--
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELISL---------EDVMEELGLGP-- 70 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~~---------~~~m~~~~L~~-- 70 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.|.- ...+...+.+ .++++++.. .++++.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 113 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDI 113 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence 4689999999999999999999999999999998721 0112222233 378887642 33444444421
Q ss_pred ----CCChh----hhHhhhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 024360 71 ----NGGLI----YCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (268)
Q Consensus 71 ----~g~~~----~~~~~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l-l~~l~~~~~~ii~v 136 (268)
.+... ...+... ++++++||++++. +|+++||||||+ ||+.++..++ +. ++.+. .+.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v 186 (229)
T 2pze_A 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 186 (229)
T ss_dssp TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 10000 0001111 1233999999999 999999999999 9999998887 54 44443 36677655
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=7.4e-22 Score=172.40 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=86.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhh---------HHHHHHHhCC----
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGL---- 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L---- 68 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. ..+..++++++. .+++.+.+++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence 4789999999999999999999999999999998721 011111 223567777764 2334443332
Q ss_pred --CCCCChhhhHhhhhh------hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH---HHHhCCCeEEEE
Q 024360 69 --GPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAV 136 (268)
Q Consensus 69 --~~~g~~~~~~~~~~~------~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~---~l~~~~~~ii~v 136 (268)
.+.+.. ..++..+. .++++||++|+. +|+++||||||+ ||+.++..++ +++. .++ ++.+++++
T Consensus 111 ~~~~~~~~-~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv 185 (237)
T 2cbz_A 111 EILPSGDR-TEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV 185 (237)
T ss_dssp TTSTTGGG-SEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE
T ss_pred Hhcccccc-ccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE
Confidence 221100 00011121 233999999999 999999999999 9999998888 6663 333 46777655
No 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=1.7e-21 Score=188.56 Aligned_cols=136 Identities=15% Similarity=0.201 Sum_probs=99.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--CCCCCCcccChhhhhh-------------HHHHHHHhC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELG 67 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--~~~~y~~~~~i~~~i~-------------~~~~m~~~~ 67 (268)
.+++|+||||||||||+++|+|+++|++|+|.+.+...+. +........++++++. ++++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 4789999999999999999999999999999876654321 1111122456666543 345666666
Q ss_pred CCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 024360 68 LGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL 139 (268)
Q Consensus 68 L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v~l~ 139 (268)
+.+. .+..+.++ +++||++|+. +|++|||||||+ ||+.++..++ ++++++++ .|.++++|
T Consensus 375 l~~~------~~~~~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v--- 442 (538)
T 3ozx_A 375 LHRL------LESNVNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII--- 442 (538)
T ss_dssp GGGC------TTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE---
T ss_pred CHHH------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE---
Confidence 6544 23444333 3999999999 999999999999 9999999988 88998864 57787666
Q ss_pred ccccccCHHHHH
Q 024360 140 DSQFITDVTKFI 151 (268)
Q Consensus 140 d~~~~~d~~~~~ 151 (268)
+|.+.....++
T Consensus 443 -sHdl~~~~~~a 453 (538)
T 3ozx_A 443 -DHDLSIHDYIA 453 (538)
T ss_dssp -CSCHHHHHHHC
T ss_pred -eCCHHHHHHhC
Confidence 45554333333
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=2.6e-21 Score=180.31 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=94.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~---------~~ 60 (268)
.+++|+||||||||||+++|+|+++ ++|+|.++|.+... +.+.| +| ..++++++. +.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 4689999999999999999999998 89999999987632 22333 11 247888774 56
Q ss_pred HHHHHhCCCCCCChhhhHhhhh-----------------hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 61 DVMEELGLGPNGGLIYCMEHLE-----------------DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 61 ~~m~~~~L~~~g~~~~~~~~~~-----------------~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
++++.+++... .+.++ ++++++|||+|+. +|+++|||||++ ||+..+..+. +.
T Consensus 127 ~~l~~~~L~~~------~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~ 197 (390)
T 3gd7_A 127 KVADEVGLRSV------IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RT 197 (390)
T ss_dssp HHHHHTTCHHH------HTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HH
T ss_pred HHHHHhCCHHH------HhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HH
Confidence 78888888643 12222 2234999999999 999999999999 9999998877 77
Q ss_pred HHHHHhCCCeEEEEE
Q 024360 123 VDHLKSRNFNVCAVY 137 (268)
Q Consensus 123 l~~l~~~~~~ii~v~ 137 (268)
++++. .+.++++++
T Consensus 198 l~~~~-~~~tvi~vt 211 (390)
T 3gd7_A 198 LKQAF-ADCTVILCE 211 (390)
T ss_dssp HHTTT-TTSCEEEEC
T ss_pred HHHHh-CCCEEEEEE
Confidence 77664 467776663
No 38
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.83 E-value=9e-20 Score=159.33 Aligned_cols=243 Identities=21% Similarity=0.380 Sum_probs=167.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
..++++.|+.|+||||++..++..+. .+.+|.+.+.||+....++.+..++++.++.++++.. ++++++....+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 47889999999999999999998887 6678999999998777777666677777777777766 677776655554333
Q ss_pred hhhHHHHHHHHHhcCC-CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 82 ~~~ls~~la~al~~~~-~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
.... .++.+.+.... +.+++|+|.|++.+......+...+.+.+ .. .++++++|+....++..+..........
T Consensus 92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 2222 33433332210 46999999999987766544443444333 22 5567788988777887776554444344
Q ss_pred HHhhcCCeeEeeccccccCCcc--ccccccCcCHHHHHHHhh-cccchhHHHHHHHHHHHhhhcCC-eeeEEeeccChhh
Q 024360 161 MVQLELPHVNILSKMDLVTNKK--EIEDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESS 236 (268)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~--~~~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~~~~~i~~~~~-~~~~~l~~~~~~~ 236 (268)
....+.|.+.|+||+|+..... .+..++. +...+.+.+. ++...+|.++ ++++++++++. ..++++|+.++++
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence 4566899999999999976431 1222222 2223323331 1122455554 77888888876 5899999999999
Q ss_pred HHHHHHHHHHhhhccccC
Q 024360 237 IRYVLSQIDNCIQWGEDA 254 (268)
Q Consensus 237 ~~~l~~~id~~~~~~e~~ 254 (268)
+.+++..|.+...+++|+
T Consensus 244 i~~l~~~i~~~~~~~~~~ 261 (262)
T 1yrb_A 244 FEDLETLAYEHYCTCGDL 261 (262)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccccCC
Confidence 999999999999999886
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.82 E-value=1e-20 Score=183.24 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=93.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceE---------EEeccCCc---------CCCCCC-C------c---ccChh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-P------V---AMDIR 54 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~~~d~~---------~~~~~y-~------~---~~~i~ 54 (268)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. ...+.+ + + ..+++
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 4689999999999999999999999999985 23443321 001111 1 1 11555
Q ss_pred hhhh-------HHHHHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 55 ~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+++. +.++++.+|+... .+..+.+ ++++||++|+. +|++|||||||+ ||+..+..++
T Consensus 128 e~~~~~~~~~~~~~~l~~lgl~~~------~~~~~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~- 198 (538)
T 1yqt_A 128 ELLKKADETGKLEEVVKALELENV------LEREIQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA- 198 (538)
T ss_dssp HHHHHHCSSSCHHHHHHHTTCTTT------TTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-
T ss_pred HHHhhhhHHHHHHHHHHHcCCChh------hhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-
Confidence 5542 6789999999764 2333333 33999999999 999999999999 9999998888
Q ss_pred HHHHHHHhCCCeEEEE
Q 024360 121 NFVDHLKSRNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (268)
++++++++.|.++++|
T Consensus 199 ~~L~~l~~~g~tvi~v 214 (538)
T 1yqt_A 199 RAIRRLSEEGKSVLVV 214 (538)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCEEEEE
Confidence 8999987778888766
No 40
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=2.9e-20 Score=182.29 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=93.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~~~~~y~~~~~i~~~i~------------~~~~m~~~~L 68 (268)
-+++|+||||||||||+++|+|+++|++|+|.+. ... ..+.....+..++++++. +.++++.+++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999998751 111 011111223456665542 4567888999
Q ss_pred CCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~~~~~ii~v 136 (268)
.+. ++..+.++ +++||++|+. +|+++||||||+ ||+.++..++ ++++++. +.|.++++|
T Consensus 462 ~~~------~~~~~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v 528 (607)
T 3bk7_A 462 IDL------YDRNVEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV 528 (607)
T ss_dssp TTT------TTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE
T ss_pred chH------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 764 23333333 3999999999 999999999999 9999999988 8899886 457787766
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.82 E-value=1.2e-20 Score=184.92 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=94.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceE---------EEeccCCc---------CCCCCC-C------c---ccChh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-P------V---AMDIR 54 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v---------~i~~~d~~---------~~~~~y-~------~---~~~i~ 54 (268)
-+++|+||||||||||+++|+|+++|++|++ .+.|.+.. ...+.+ + + ..+++
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 4689999999999999999999999999985 23443321 001111 0 1 12566
Q ss_pred hhhh-------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHH
Q 024360 55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (268)
Q Consensus 55 ~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~ 120 (268)
+++. ++++++.+|+... ++..+.++ +++||++|+. +|++|||||||+ ||+..+..++
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~------~~~~~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~- 268 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENV------LDRELHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA- 268 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTG------GGSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-
T ss_pred HHhhhhHHHHHHHHHHHHcCCCch------hCCChhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-
Confidence 6652 6789999999764 34444333 3999999999 999999999999 9999999888
Q ss_pred HHHHHHHhCCCeEEEE
Q 024360 121 NFVDHLKSRNFNVCAV 136 (268)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (268)
++++++++.|.++++|
T Consensus 269 ~~L~~l~~~g~tvIiv 284 (607)
T 3bk7_A 269 RVIRRLANEGKAVLVV 284 (607)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCEEEEE
Confidence 8999997778888766
No 42
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.82 E-value=1.3e-20 Score=182.34 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=92.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceE-----------EEeccCCcC-------C------CCCC---C---cccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA-------E------NFDY---P---VAMD 52 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v-----------~i~~~d~~~-------~------~~~y---~---~~~~ 52 (268)
.+++|+||||||||||+|+|+|+++|++|+| .+.|.+... . ...| . ...+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 5799999999999999999999999999988 344443310 0 1111 1 1124
Q ss_pred hhhhhh-------HHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHH
Q 024360 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (268)
Q Consensus 53 i~~~i~-------~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i 118 (268)
+++.+. ++++++.+++... .+..+.++ +++||++|+. +|+++||||||+ ||+..+..+
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~------~~~~~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l 177 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNL------WNKDANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNM 177 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGG------TTSBGGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHH
Confidence 444442 6789999998654 23333333 3999999999 999999999999 999999888
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 024360 119 LRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++++ |.++++|
T Consensus 178 ~-~~l~~l~~-g~tii~v 193 (538)
T 3ozx_A 178 A-KAIRELLK-NKYVIVV 193 (538)
T ss_dssp H-HHHHHHCT-TSEEEEE
T ss_pred H-HHHHHHhC-CCEEEEE
Confidence 8 99999965 7887766
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.82 E-value=3.2e-20 Score=181.17 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=92.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| ..|+++++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 449 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence 4689999999999999999999999999999999987532 12333 11 247888764
Q ss_pred HHHHHHHhCCCCC------CChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGPN------GGLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 ~~~~m~~~~L~~~------g~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.++++..++.+. | +-... ..+. +.++++|||++.. +|+++||||||+ ||+.+...+. +.+++
T Consensus 450 ~~~~l~~~~l~~~~~~~p~g-~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~ 525 (582)
T 3b60_A 450 IEEAARMAYAMDFINKMDNG-LDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDE 525 (582)
T ss_dssp HHHHHHTTTCHHHHHHSTTG-GGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHhcccc-ccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHH
Confidence 3345555554321 0 00000 0111 2234999999999 999999999999 9999998888 88888
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
+.+ |.+++++
T Consensus 526 ~~~-~~tvi~i 535 (582)
T 3b60_A 526 LQK-NRTSLVI 535 (582)
T ss_dssp HHT-TSEEEEE
T ss_pred HhC-CCEEEEE
Confidence 865 7777666
No 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.81 E-value=6.5e-20 Score=179.00 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=93.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.++| +| ..|+++++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence 4689999999999999999999999999999999977531 23444 22 237777764
Q ss_pred HHHHHHHhCCCCCC-----ChhhhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 59 LEDVMEELGLGPNG-----GLIYCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 59 ~~~~m~~~~L~~~g-----~~~~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
+.++++..++.+.. +.-.... .+. ++++++|||++.. +|+++||||||+ ||+.+.+.+. +.++++
T Consensus 450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b5x_A 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 34455556553210 0000001 111 2234999999999 999999999999 9999998888 888887
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ |.+++++
T Consensus 527 ~~-~~tvi~i 535 (582)
T 3b5x_A 527 QK-NKTVLVI 535 (582)
T ss_pred cC-CCEEEEE
Confidence 54 7777655
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=3e-20 Score=179.92 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=89.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC--cCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~--~~~~~~y~~~~~i~~~i~------------~~~~m~~~~L 68 (268)
-+++|+||||||||||+++|+|+++|++|+|.+. ... ..+.....+..++.+++. +.++++.+++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999998751 111 011111123456665542 2345555666
Q ss_pred CCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~~~~~ii~v 136 (268)
.+. .+..+..+ +++||++|+. +|++|||||||+ ||+.++..+. ++++++. +.|.++++|
T Consensus 392 ~~~------~~~~~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v 458 (538)
T 1yqt_A 392 IDL------YDREVNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV 458 (538)
T ss_dssp GGG------TTSBGGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE
T ss_pred hhh------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 533 23333333 3999999999 999999999999 9999999988 8889886 347788766
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=1.4e-20 Score=169.03 Aligned_cols=129 Identities=19% Similarity=0.131 Sum_probs=85.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC-CcCCCCCCCcccChhhhhh--------HHHHHHHhCCCCCC-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGPNG- 72 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d-~~~~~~~y~~~~~i~~~i~--------~~~~m~~~~L~~~g- 72 (268)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+++ .++++++. ..++++.+++....
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 4689999999999999999999999999999987621 0112222223 37877763 22344444442110
Q ss_pred ----ChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 024360 73 ----GLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (268)
Q Consensus 73 ----~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l-l~~l~~~~~~ii~v 136 (268)
+....+ ..+. +.++++||++|+. +|+++||||||+ ||+.++..++ ++ ++.++ .+.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv 215 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 215 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 000000 1111 1233999999999 999999999999 9999998887 54 44443 36777655
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.80 E-value=4.6e-20 Score=180.51 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=93.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +.|+++++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 4689999999999999999999999999999999987532 12333 11 247777763
Q ss_pred --HHHHHHHhCCCC------CCChhhhH----hhhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 59 --LEDVMEELGLGP------NGGLIYCM----EHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 59 --~~~~m~~~~L~~------~g~~~~~~----~~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
+.++++.+++.+ .| .-... ..+. +.++++|||++.. +|+++|+||||+ ||+.+.+.+. +.+
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g-~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l 526 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQG-FNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EAL 526 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSG-GGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHH
T ss_pred HHHHHHHHHcCCHHHHHhCccc-ccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHH
Confidence 345666666531 11 00000 1111 2234999999999 999999999999 9999998888 888
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
+++.+ +.+++++
T Consensus 527 ~~~~~-~~tvi~i 538 (595)
T 2yl4_A 527 DRLMD-GRTVLVI 538 (595)
T ss_dssp HHHHT-TSEEEEE
T ss_pred HHHhc-CCEEEEE
Confidence 88866 6777655
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=7.2e-20 Score=178.60 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=92.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + .+.|++|++. +
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 447 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987632 12333 1 1348888875 3
Q ss_pred HHHHHHhCCC------CCCChhhhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++. |.| .-.... .+. ++++++|||++.. +|+++|+||||+ ||+.+.+.+. +.++.+
T Consensus 448 ~~~~~~~~~~~~~~~lp~g-~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 523 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQG-YDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVL 523 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTG-GGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHhCcHHHHHhCcch-hhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 4455554442 111 000001 111 2234999999999 999999999999 9999988777 888887
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
.+ +.|++++
T Consensus 524 ~~-~~t~i~i 532 (578)
T 4a82_A 524 SK-DRTTLIV 532 (578)
T ss_dssp TT-TSEEEEE
T ss_pred cC-CCEEEEE
Confidence 54 6677655
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.3e-20 Score=180.98 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=91.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE-----------EeccCCcC-------CCC------CCCc---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV--------- 49 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~-----------i~~~d~~~-------~~~------~y~~--------- 49 (268)
.+++|+||||||||||+++|+|+++|++|+|. +.|.+... ..+ .|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 47899999999999999999999999999972 22222100 000 0100
Q ss_pred ccChhhhh---------hHHHHHHHhCCCCCCChhhhHhhhhhhH------HHHHHHHHhcCCCCCEEEEeCCCc-CCHH
Q 024360 50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNL------DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (268)
Q Consensus 50 ~~~i~~~i---------~~~~~m~~~~L~~~g~~~~~~~~~~~~l------s~~la~al~~~~~p~~lilDEP~~-LD~~ 113 (268)
..++.+.+ .++++++.+++... ++..+.++ +++||++|+. +|+++||||||+ ||+.
T Consensus 184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENV------LKRDIEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVK 255 (608)
T ss_dssp SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGG------GGSCTTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHcCCcch------hCCChHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHH
Confidence 01222222 26788999999764 34444333 3999999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEE
Q 024360 114 THVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 114 ~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+..++ ++++++++.|.++++|
T Consensus 256 ~~~~l~-~~l~~l~~~g~tvi~v 277 (608)
T 3j16_B 256 QRLNAA-QIIRSLLAPTKYVICV 277 (608)
T ss_dssp HHHHHH-HHHHGGGTTTCEEEEE
T ss_pred HHHHHH-HHHHHHHhCCCEEEEE
Confidence 998888 9999998778887766
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-19 Score=175.84 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=93.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceE------EEeccCCcCCCCCCCcccChhhhhh------------HHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM------HIVNLDPAAENFDYPVAMDIRELIS------------LEDVME 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v------~i~~~d~~~~~~~y~~~~~i~~~i~------------~~~~m~ 64 (268)
.+++|+||||||||||+++|+|+++|++|+. .+..++ .......++++++. .+++++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~-----~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-----IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSS-----CCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccc-----ccccCCccHHHHHHHHhhcccccHHHHHHHHH
Confidence 3689999999999999999999999999962 222111 11111234544432 467888
Q ss_pred HhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 024360 65 ELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (268)
Q Consensus 65 ~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-~~~~~ii~v 136 (268)
.+++.+. .+..+.+ ++++||++|+. +|++|||||||+ ||+.++..++ ++++++. +.|.++++|
T Consensus 454 ~l~l~~~------~~~~~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv 524 (608)
T 3j16_B 454 PLRIDDI------IDQEVQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV 524 (608)
T ss_dssp HHTSTTT------SSSBSSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE
T ss_pred HcCChhh------hcCChhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 9998765 2333333 33999999999 999999999999 9999999988 8898885 458888766
Q ss_pred EecccccccCHHHH
Q 024360 137 YLLDSQFITDVTKF 150 (268)
Q Consensus 137 ~l~d~~~~~d~~~~ 150 (268)
+|.+.....+
T Consensus 525 ----tHdl~~~~~~ 534 (608)
T 3j16_B 525 ----EHDFIMATYL 534 (608)
T ss_dssp ----CSCHHHHHHH
T ss_pred ----eCCHHHHHHh
Confidence 4554433333
No 51
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=1.2e-19 Score=177.79 Aligned_cols=129 Identities=15% Similarity=0.207 Sum_probs=91.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| + .+.|+++++. +
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 461 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987632 12222 1 1347888875 2
Q ss_pred HHHHHHhCCC------CCCChhhhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLG------PNGGLIYCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~------~~g~~~~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.++++..++. |.| .-.... .+. ++++++|||++.. +|+++|+||||+ ||+.+...+. +.++++
T Consensus 462 ~~~~~~~~~~~~~~~~~~g-~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 537 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEG-YETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKL 537 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTG-GGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHhCCHHHHHhcccc-ccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHH
Confidence 3333333331 111 000000 111 2234999999999 999999999999 9999998888 888887
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
. +|.|+++|
T Consensus 538 ~-~~~t~i~i 546 (598)
T 3qf4_B 538 M-EGKTSIII 546 (598)
T ss_dssp H-TTSEEEEE
T ss_pred c-CCCEEEEE
Confidence 5 47787766
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=2.4e-19 Score=175.18 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=91.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| +| +.|++|++. +
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999987632 12333 11 347888875 2
Q ss_pred HHHHHHhCCCC------CCChhhhHh----hhh--hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 60 EDVMEELGLGP------NGGLIYCME----HLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 60 ~~~m~~~~L~~------~g~~~~~~~----~~~--~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
.+.++..++.+ .| +-.... .+. ++++++|||++.. +|+++||||||+ ||+.+.+.+. +.++++
T Consensus 450 ~~~~~~~~~~~~i~~l~~g-~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 525 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEG-YDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRY 525 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSG-GGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHH
T ss_pred HHHHHHhCcHHHHHhcccc-hhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 33444433311 11 000001 111 2244999999999 999999999999 9999998888 778877
Q ss_pred HhCCCeEEEE
Q 024360 127 KSRNFNVCAV 136 (268)
Q Consensus 127 ~~~~~~ii~v 136 (268)
. ++.|+++|
T Consensus 526 ~-~~~tvi~i 534 (587)
T 3qf4_A 526 T-KGCTTFII 534 (587)
T ss_dssp S-TTCEEEEE
T ss_pred C-CCCEEEEE
Confidence 4 47777666
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.72 E-value=1.7e-17 Score=164.41 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=76.5
Q ss_pred eEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------CceEEEeccCCcC---CCCC-----
Q 024360 3 YAQLVIGPAGSGKSTYC---------------------SSLYRHCETV-------RRTMHIVNLDPAA---ENFD----- 46 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl---------------------~~l~g~l~~~-------~G~v~i~~~d~~~---~~~~----- 46 (268)
-+++|+||||||||||+ +++.|+..|+ .+.+.+.+.+... ..+.
T Consensus 45 e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~ 124 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEI 124 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTC
T ss_pred CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeech
Confidence 47899999999999998 8888988888 4455555543211 0000
Q ss_pred ---------------------CCcccChhhhhhH------------------------HHHHHHhCCCCCCChhhhHhhh
Q 024360 47 ---------------------YPVAMDIRELISL------------------------EDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 47 ---------------------y~~~~~i~~~i~~------------------------~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
..+.+++++++.. .++++.+||+......+..+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 204 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLS 204 (670)
T ss_dssp C-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGGSC
T ss_pred hhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCC
Confidence 0112345444321 1236677776532111111111
Q ss_pred h-hhHHHHHHHHHhcCCCCC--EEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 E-DNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~-~~ls~~la~al~~~~~p~--~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. ++++++||++|+. +|+ +|||||||+ ||+..+..++ +++++++++|.++|+|
T Consensus 205 GGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 205 GGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 1 1233999999999 887 999999999 9999999988 9999998778888776
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=2.7e-17 Score=173.12 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
.+++|+||||||||||+++|+|+++|++|+|.++|.|... ..+.| +| +.||++++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 4689999999999999999999999999999999988642 23444 22 457888873
Q ss_pred -HHHHHHHhCCC------CCCChhh----hHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHH
Q 024360 59 -LEDVMEELGLG------PNGGLIY----CMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (268)
Q Consensus 59 -~~~~m~~~~L~------~~g~~~~----~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~ 125 (268)
+.+.++..++. |.|-.-. ..+.. .++++++|||++.. +|+++||||||+ ||+.+.+.+. +.++.
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 33444444432 1110000 00111 12244999999999 999999999999 9999988877 77777
Q ss_pred HHhCCCeEEEE
Q 024360 126 LKSRNFNVCAV 136 (268)
Q Consensus 126 l~~~~~~ii~v 136 (268)
+. .|.|+++|
T Consensus 1217 ~~-~~~tvi~i 1226 (1284)
T 3g5u_A 1217 AR-EGRTCIVI 1226 (1284)
T ss_dssp HS-SSSCEEEE
T ss_pred hC-CCCEEEEE
Confidence 63 47787766
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=4.8e-17 Score=171.68 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=92.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC------CcccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y------~~~~~i~~~i~----------~ 59 (268)
..++|+||+|||||||+++|.|+++|++|+|.++|.|... +++.| -.+-|||+|+. +
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v 524 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM 524 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence 3689999999999999999999999999999999987643 22333 23558888886 3
Q ss_pred HHHHHHhCC---------------CCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHH
Q 024360 60 EDVMEELGL---------------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (268)
Q Consensus 60 ~~~m~~~~L---------------~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll 123 (268)
.++++..++ |++|..+ ...++++++||||+.. +|+++||||||+ ||..+.+.+. +.+
T Consensus 525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L----SGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~~l 597 (1321)
T 4f4c_A 525 VAACKMANAEKFIKTLPNGYNTLVGDRGTQL----SGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-QAL 597 (1321)
T ss_dssp HHHHHHTTCHHHHHHSTTTTSSEESSSSCCC----CHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-HHH
T ss_pred HHHHHHccchhHHHcCCCCCccEecCCCCCC----CHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-HHH
Confidence 344444332 2222100 1123355999999999 999999999999 9999976666 777
Q ss_pred HHHHhCCCeEEEE
Q 024360 124 DHLKSRNFNVCAV 136 (268)
Q Consensus 124 ~~l~~~~~~ii~v 136 (268)
+.+.+ |.|+|+|
T Consensus 598 ~~~~~-~~T~iii 609 (1321)
T 4f4c_A 598 DKAAK-GRTTIII 609 (1321)
T ss_dssp HHHHT-TSEEEEE
T ss_pred HHHhC-CCEEEEE
Confidence 77755 5666655
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.68 E-value=6.1e-17 Score=170.49 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=89.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-C-----cccChhhhhh----------H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~-----~~~~i~~~i~----------~ 59 (268)
..++|+||||||||||+++|.|+++|++|+|.++|.|... ..++| + .+-||++++. +
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~ 496 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987532 12222 1 1348888875 2
Q ss_pred HHHHHHhCCC---------------CCCChhhhHhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHH
Q 024360 60 EDVMEELGLG---------------PNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (268)
Q Consensus 60 ~~~m~~~~L~---------------~~g~~~~~~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~l 122 (268)
.+.++..++. ..|. +.. .++++++|||++.. +|+++||||||+ ||+.+.+.+. +.
T Consensus 497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-----~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~ 568 (1284)
T 3g5u_A 497 EKAVKEANAYDFIMKLPHQFDTLVGERGA-----QLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AA 568 (1284)
T ss_dssp HHHHHHTTCHHHHHHSTTGGGCCCSSSSC-----SSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HH
T ss_pred HHHHHHhCcHHHHHhccccccccccCCCC-----ccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 2333332221 1110 111 12244999999999 999999999999 9999887666 77
Q ss_pred HHHHHhCCCeEEEE
Q 024360 123 VDHLKSRNFNVCAV 136 (268)
Q Consensus 123 l~~l~~~~~~ii~v 136 (268)
++.+.+ |.|+++|
T Consensus 569 l~~~~~-~~t~i~i 581 (1284)
T 3g5u_A 569 LDKARE-GRTTIVI 581 (1284)
T ss_dssp HHHHHT-TSEEEEE
T ss_pred HHHHcC-CCEEEEE
Confidence 777654 7777665
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.68 E-value=2.3e-17 Score=174.06 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=105.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------CCCCC-Cc-----ccChhhhhh-----------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------~~~~y-~~-----~~~i~~~i~----------- 58 (268)
..+||+||+|||||||+++|.|++.|++|+|.++|.|... +++.| +| +-|||+|+.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence 3589999999999999999999999999999999998743 33433 22 347888853
Q ss_pred -HHHHHHHhCCC------CCCChhhh-----Hhhh-hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH
Q 024360 59 -LEDVMEELGLG------PNGGLIYC-----MEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (268)
Q Consensus 59 -~~~~m~~~~L~------~~g~~~~~-----~~~~-~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~ 124 (268)
+.++++..++. |.| +-.. .+.. .+.++.+|||||.+ +|++|||||||+ ||..+-+.+. +.++
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~G-ldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~ 1261 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEG-FETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALD 1261 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTT-TCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHT
T ss_pred HHHHHHHHhCChHHHHcCcCC-CCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHH
Confidence 44555555552 221 0000 0111 12244999999999 999999999999 9999987666 6666
Q ss_pred HHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
++. +++|+++| +|.++... ..-.|-|+.+.-+++..
T Consensus 1262 ~~~-~~~TvI~I----AHRLsTi~----------------~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1262 RAR-EGRTCIVI----AHRLNTVM----------------NADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp TTS-SSSEEEEE----CSSSSTTT----------------TCSEEEEESSSSEEEEE
T ss_pred HHc-CCCEEEEe----ccCHHHHH----------------hCCEEEEEECCEEEEEC
Confidence 653 36787766 46554211 23366788777665543
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.67 E-value=3.4e-18 Score=146.44 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=72.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc--CC--cCCCCCC-CcccChhhhh-hH-HHHHHHh-CCCCCCCh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDY-PVAMDIRELI-SL-EDVMEEL-GLGPNGGL 74 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~--d~--~~~~~~y-~~~~~i~~~i-~~-~~~m~~~-~L~~~g~~ 74 (268)
.+++|+||||||||||+++|+|+ +|++|+|..... .+ ....+.| +++. ++++ .. ......+ +.......
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~~~~~~ 99 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMVEPEVI 99 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTSCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhccHHHH
Confidence 36899999999999999999999 999999854211 11 2234555 3321 3333 11 0011111 10000000
Q ss_pred hhhHhh-hhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 75 IYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 75 ~~~~~~-~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
...++. +.+.++++||++|+. +|+++||||||+- ++..+. ++++++ ++|.+++
T Consensus 100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tii 153 (208)
T 3b85_A 100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMV 153 (208)
T ss_dssp HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEE
T ss_pred HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEE
Confidence 000111 022233899999999 9999999999998 666666 777777 5577776
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=6.9e-17 Score=164.71 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=32.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
-+++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 47899999999999999999999999999999864
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.64 E-value=2.7e-17 Score=135.94 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCc-CCHH----------------hHHHHHHHHHHHHHhCCCeEEEE
Q 024360 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 84 ~ls~~la~al~~~~~p~~lilDEP~~-LD~~----------------~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++.++||+++.. +|++++||||++ ||+. .+..+. ++++.++++|.+++++
T Consensus 89 ~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~v 155 (171)
T 4gp7_A 89 KPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYI 155 (171)
T ss_dssp HHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEE
T ss_pred HHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEE
Confidence 344899999999 999999999999 9999 556666 7777787668888766
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=6.4e-16 Score=157.60 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=79.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc-CCC--C--CCceEEEeccCCcCCCCCCCcccChhhhhh---------HHHHHHHhCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGL 68 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g-~l~--~--~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~---------~~~~m~~~~L 68 (268)
-+++|+||||||||||+++|+| .+. + ....+.+..+++ ....+.+++.+++. +.++++.+|+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 4689999999999999999994 221 0 111122221111 01233456666653 5678888988
Q ss_pred CCCCChhhhHhhhhhh------HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.... ++..+.+ ++++||++|+. +|++|||||||+ ||+.++..+. ++++. .|.+++++
T Consensus 538 ~~~~-----~~~~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv 601 (986)
T 2iw3_A 538 TDEM-----IAMPISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI 601 (986)
T ss_dssp CHHH-----HHSBGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE
T ss_pred Chhh-----hcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE
Confidence 5210 2333333 33999999999 999999999999 9999998877 77766 47777665
No 62
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.63 E-value=2.9e-17 Score=154.05 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=99.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCC----CCCcccChhhhh-------hHHHHHHHhCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN 71 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~----~y~~~~~i~~~i-------~~~~~m~~~~L~~~ 71 (268)
.+++|+||||||||||+|+|+|+++|++|+|.+.|.+...... +..+.++++|+. .++++++.+++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4799999999999999999999999999999988865422111 112233444332 37889999988654
Q ss_pred CChhhhHhhh-hhhHHHHHHHHHhcC--------CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHH-----hCC---CeE
Q 024360 72 GGLIYCMEHL-EDNLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN---FNV 133 (268)
Q Consensus 72 g~~~~~~~~~-~~~ls~~la~al~~~--------~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~-----~~~---~~i 133 (268)
..... +... ....++.||+++... ++|+++++|||++ +|+..+..++ ++++.+. +.| .++
T Consensus 150 ~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~~~i 227 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAEPPI 227 (413)
T ss_dssp SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSSCCE
T ss_pred CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCCCcE
Confidence 21111 1111 133448888888762 2688999999999 9999998888 7777773 332 233
Q ss_pred EEEEecccccccC--HHHHHHHHH
Q 024360 134 CAVYLLDSQFITD--VTKFISGCM 155 (268)
Q Consensus 134 i~v~l~d~~~~~d--~~~~~s~~l 155 (268)
+++.+|...+ ...+++.+.
T Consensus 228 ---iliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 228 ---FLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp ---EECCTTCTTSTTHHHHHHHHH
T ss_pred ---EEEecCcCCccCHHHHHHHHH
Confidence 2467777765 777776554
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.63 E-value=9e-16 Score=151.99 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCCC---CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~p---~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
..+.++.++++......+..+... ++++++||++|+. +| ++||+||||+ ||+.+...++ ++++++++.|.++
T Consensus 523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~tv 599 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEE
T ss_pred HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 345677778764211111111111 2234999999998 65 5999999999 9999999988 9999998778888
Q ss_pred EEE
Q 024360 134 CAV 136 (268)
Q Consensus 134 i~v 136 (268)
++|
T Consensus 600 i~v 602 (670)
T 3ux8_A 600 LVI 602 (670)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.4e-16 Score=149.84 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=77.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-e-EEEeccCCcCCCCCC-Cc---------ccChhhhhh------------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-PV---------AMDIRELIS------------ 58 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~-v~i~~~d~~~~~~~y-~~---------~~~i~~~i~------------ 58 (268)
-+++|+||||||||||+|+|+|+.+|++| + |+++| ++. +.+.| ++ .+++++++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~ 216 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLH 216 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHH
Confidence 35899999999999999999999999999 8 99887 442 33333 22 234544321
Q ss_pred -HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHH--HhcCCCCCE----EEEeC-CCc-CCHHhHHHHHHHHHHHHHh
Q 024360 59 -LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS 128 (268)
Q Consensus 59 -~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~a--l~~~~~p~~----lilDE-P~~-LD~~~~~~i~~~ll~~l~~ 128 (268)
+.++++.+|+..... . .+... ..+++++|++ |+. +|++ +|+|| |++ ||+. . ..+.++++.
T Consensus 217 ~~~~ll~~~gl~~~~~-~--~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~-~~l~~l~~~--- 286 (460)
T 2npi_A 217 NKQPMVKNFGLERINE-N--KDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-L-AELHHIIEK--- 286 (460)
T ss_dssp CBCCEECCCCSSSGGG-C--HHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-C-HHHHHHHHH---
T ss_pred HHHHHHHHhCCCcccc-h--hhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-H-HHHHHHHHH---
Confidence 112333344433211 0 01111 1123899999 999 9999 99999 999 9998 3 333244443
Q ss_pred CCCeEEEE
Q 024360 129 RNFNVCAV 136 (268)
Q Consensus 129 ~~~~ii~v 136 (268)
.+.++++|
T Consensus 287 ~~~tviiV 294 (460)
T 2npi_A 287 LNVNIMLV 294 (460)
T ss_dssp TTCCEEEE
T ss_pred hCCCEEEE
Confidence 35666555
No 65
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.56 E-value=5.9e-15 Score=133.04 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------------CCCCC-Ccc-------cChhhhhhHH
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVA-------MDIRELISLE 60 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------------~~~~y-~~~-------~~i~~~i~~~ 60 (268)
+.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.+ ..++| ++. .++++++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999988632 13444 222 2244444321
Q ss_pred H-------HHHHhCCCCCCChhhhHhhhhhhH---HHHHHHHHhcCCCCC--EEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 61 D-------VMEELGLGPNGGLIYCMEHLEDNL---DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 61 ~-------~m~~~~L~~~g~~~~~~~~~~~~l---s~~la~al~~~~~p~--~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
. +++.+|+.+. .+..+.++ ++.+|+++.. +|+ ++++| ||+ +|+... ++.+.
T Consensus 180 ~~~~~d~~lldt~gl~~~------~~~~~~eLSkqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~-------~~~~~ 243 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHT------NYSLMEELIACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQ-------AREFN 243 (302)
T ss_dssp HHTTCSEEEECCCCCSSC------CHHHHHHHHHHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHH-------HHHHH
T ss_pred HHcCCcchHHhcCCCCcc------hhHHHHHHHHHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHH-------HHHHH
Confidence 1 1122233322 23333333 3889999998 999 99999 999 998754 23344
Q ss_pred -hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEe
Q 024360 128 -SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (268)
Q Consensus 128 -~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~v 171 (268)
+.+.+++++.-+|... ..... .+.....+.|..-+
T Consensus 244 ~~~g~t~iiiThlD~~~--~~g~~-------l~~~~~~~~pi~~i 279 (302)
T 3b9q_A 244 EVVGITGLILTKLDGSA--RGGCV-------VSVVEELGIPVKFI 279 (302)
T ss_dssp HHTCCCEEEEECCSSCS--CTHHH-------HHHHHHHCCCEEEE
T ss_pred HhcCCCEEEEeCCCCCC--ccChh-------eehHHHHCCCEEEE
Confidence 3477766553345431 12222 23444567887643
No 66
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.55 E-value=1.6e-15 Score=126.60 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=68.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC-------cCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCChh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~-------~~~~~~y-~~~~~i~~~i~~~~~m~~~~L~~~g~~~ 75 (268)
.++|+||||||||||+++|+|++. |.+.|.++ ....++| ++..+..+++ +..++..+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~-~-- 68 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSK-K-- 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCS-S--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcc-c--
Confidence 578999999999999999999985 33444332 1122333 2222222221 111111110 0
Q ss_pred hhHhhhhhhH------HHHHHHH-----HhcCCCCCEEEEeC--CCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 024360 76 YCMEHLEDNL------DDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (268)
Q Consensus 76 ~~~~~~~~~l------s~~la~a-----l~~~~~p~~lilDE--P~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~ 141 (268)
..+....++ ++.+|++ +.. +|+++|+|| |++ +|+..+..+. ++++ +.+.+++++ .+.+
T Consensus 69 -~~~~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~---~~~~~~i~~-~H~~ 140 (178)
T 1ye8_A 69 -LVGSYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMH---DPNVNVVAT-IPIR 140 (178)
T ss_dssp -EETTEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHT---CTTSEEEEE-CCSS
T ss_pred -cccccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHh---cCCCeEEEE-EccC
Confidence 012222223 3788996 888 999999999 999 9998876655 5443 345545444 2234
Q ss_pred cccc
Q 024360 142 QFIT 145 (268)
Q Consensus 142 ~~~~ 145 (268)
|...
T Consensus 141 h~~~ 144 (178)
T 1ye8_A 141 DVHP 144 (178)
T ss_dssp CCSH
T ss_pred CCch
Confidence 5433
No 67
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.52 E-value=3.7e-15 Score=146.16 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=85.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccCCc----------CCCCCC-Cc------ccChhhhhhHHHHHHHh
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-PV------AMDIRELISLEDVMEEL 66 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d~~----------~~~~~y-~~------~~~i~~~i~~~~~m~~~ 66 (268)
++|+||||||||||+++|+|+..| ++|.|.+.|.+.. ...++| ++ ..++++++.. ....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence 799999999999999999999988 7999998887631 122333 22 2334444432 12222
Q ss_pred CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCC------Cc-CCHHhHHHHHHHHHHHHHhCCCe-EEEEEe
Q 024360 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFN-VCAVYL 138 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP------~~-LD~~~~~~i~~~ll~~l~~~~~~-ii~v~l 138 (268)
+....+. . ... ..++.+... .|+++|+||| ++ +|+..+..+. ++++.+.+++.+ ++++.-
T Consensus 126 ~~~~~~~-----s---~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt 193 (608)
T 3szr_A 126 AGEGMGI-----S---HEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVP 193 (608)
T ss_dssp HCSSSCC-----C---SCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEE
T ss_pred cCCcccc-----c---hHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEe
Confidence 2211110 0 000 111112234 7999999999 88 9999988887 888886544333 333322
Q ss_pred cccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccCCc
Q 024360 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (268)
Q Consensus 139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~~~ 181 (268)
++....... + +-.....-..+.+.+-|++|.|++.+.
T Consensus 194 ~~~d~a~~~---~---l~la~~v~~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 194 SNVDIATTE---A---LSMAQEVDPEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp SSSCTTTCH---H---HHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred ccchhccHH---H---HHHHHHHhhcCCceEEEecchhhcCcc
Confidence 232222111 1 111222234567899999999999653
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.51 E-value=7.9e-14 Score=127.11 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=75.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
..++|+||||||||||+++|+|+++|++|.|.+.|.+.. ...+ .++.+.+- .+ + .
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~----~~~~---~~~~i~~~-----~g----g---------g 226 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI----VFKH---HKNYTQLF-----FG----G---------N 226 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC----CCSS---CSSEEEEE-----CB----T---------T
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc----cccc---chhEEEEE-----eC----C---------C
Confidence 358999999999999999999999999999999886421 1110 01110000 00 1 1
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHH
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (268)
..++.+|+++|.. +|+++|+|||++- ++. ++++.+...+.+++++ +|..+ ....+++++..
T Consensus 227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t----~H~~~-~~~~~dri~~l 287 (330)
T 2pt7_A 227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT----LHAGS-SEEAFIRLANM 287 (330)
T ss_dssp BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE----EECSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE----EcccH-HHHHhhhheeh
Confidence 2355899999999 9999999999982 234 5677776534345433 23333 55556655443
No 69
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.50 E-value=6.6e-14 Score=129.02 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------------CCCCC-Ccc-------cChhhhhhHH
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVA-------MDIRELISLE 60 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------------~~~~y-~~~-------~~i~~~i~~~ 60 (268)
+.+++|+|||||||||+++.|+|+++|.+|+|.+.|.|+.+ ..++| ++. .++++++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 36899999999999999999999999999999999988632 13444 222 1244444321
Q ss_pred H-------HHHHhCCCCCCChhhhHhhhhhhH---HHHHHHHHhcCCCCC--EEEEeCCCc-CCHHhHHHHHHHHHHHHH
Q 024360 61 D-------VMEELGLGPNGGLIYCMEHLEDNL---DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (268)
Q Consensus 61 ~-------~m~~~~L~~~g~~~~~~~~~~~~l---s~~la~al~~~~~p~--~lilDEP~~-LD~~~~~~i~~~ll~~l~ 127 (268)
. +++.+|+.+. .+.++.++ ++.|++++.. +|+ ++++| ||+ +|+.... +.+.
T Consensus 237 ~~~~~d~~lldt~Gl~~~------~~~~~~eLSkqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~ 300 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHT------NYSLMEELIACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFN 300 (359)
T ss_dssp HHTTCSEEEEECCCCSSC------CHHHHHHHHHHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHH
T ss_pred HhCCCHHHHHHhcCCChh------hhhHHHHHHHHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHH
Confidence 1 1122233332 13333333 3889999999 999 99999 999 9987542 2343
Q ss_pred -hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 128 -SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 128 -~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
+.+.+++++.-+|.. ..... ..+.....+.|..-+-
T Consensus 301 ~~~g~t~iiiThlD~~--~~gG~-------~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 301 EVVGITGLILTKLDGS--ARGGC-------VVSVVEELGIPVKFIG 337 (359)
T ss_dssp HHTCCCEEEEESCTTC--SCTHH-------HHHHHHHHCCCEEEEE
T ss_pred HhcCCeEEEEecCccc--ccccH-------HHHHHHHhCCCEEEEe
Confidence 347776655334542 11222 2234456678886443
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.50 E-value=2e-14 Score=145.06 Aligned_cols=75 Identities=23% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCC---CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeE
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~---p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~i 133 (268)
+.++++.++|+............. +.+++.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.+|
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~tV 786 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 457788889876310011111111 2234899999998 6 69999999999 9999999988 9999998778888
Q ss_pred EEE
Q 024360 134 CAV 136 (268)
Q Consensus 134 i~v 136 (268)
++|
T Consensus 787 Ivi 789 (842)
T 2vf7_A 787 IAV 789 (842)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 71
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.49 E-value=6.6e-14 Score=123.63 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=76.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcCCCCCCCcc-cChhhhhhHHHHHHHhCCCCCCChhhhHhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~~~~~y~~~-~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~ 80 (268)
-+++|+||||||||||+++|+|+++|. +|+|.+.|.++.. . .+. ... +. . ..+++.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~--~--~~~~~~~---v~-q---~~~gl~~---------- 84 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--V--FKHKKSI---VN-Q---REVGEDT---------- 84 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS--C--CCCSSSE---EE-E---EEBTTTB----------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee--e--cCCccee---ee-H---HHhCCCH----------
Confidence 468999999999999999999999997 9999999876421 0 111 000 00 0 0222222
Q ss_pred hhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 81 ~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
..++.+|+++|.. +|+++++|||+ |+.+... +++.. ..|.+++++ +|.. +...++++++.
T Consensus 85 --~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~----~l~~~-~~g~~vl~t----~H~~-~~~~~~dri~~ 144 (261)
T 2eyu_A 85 --KSFADALRAALRE--DPDVIFVGEMR--DLETVET----ALRAA-ETGHLVFGT----LHTN-TAIDTIHRIVD 144 (261)
T ss_dssp --SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHH----HHHHH-HTTCEEEEE----ECCS-SHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHH----HHHHH-ccCCEEEEE----eCcc-hHHHHHHHHhh
Confidence 2346899999999 99999999999 7776543 34433 457776544 2332 24455555543
No 72
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.47 E-value=1.2e-13 Score=140.46 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCC-CCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEE
Q 024360 59 LEDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYL-DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (268)
Q Consensus 59 ~~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~-~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~ 135 (268)
..++++.+||+....-........ +.++++||++|+.-+ +|+++||||||+ ||+...+.++ ++++++.+.|.|+|+
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEE
Confidence 456777888864210000011111 224499999998710 247999999999 9999999988 999999877888876
Q ss_pred E
Q 024360 136 V 136 (268)
Q Consensus 136 v 136 (268)
|
T Consensus 864 I 864 (916)
T 3pih_A 864 I 864 (916)
T ss_dssp E
T ss_pred E
Confidence 6
No 73
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.45 E-value=1e-13 Score=128.91 Aligned_cols=47 Identities=21% Similarity=0.089 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCC--CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 86 DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 86 s~~la~al~~~~~p--~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++.||++++. +| ++||||||++ ||+.....+. ++++.+. +|.++++|
T Consensus 303 rl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i 352 (415)
T 4aby_A 303 RVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV 352 (415)
T ss_dssp HHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence 3899999999 99 9999999999 9999998888 8899886 47787766
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.45 E-value=1.6e-15 Score=128.69 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=43.5
Q ss_pred HHhcCCCCCEEEEeCCCc-C----CHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 92 al~~~~~p~~lilDEP~~-L----D~~~~~~i~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
+++. +|+++++|||++ + |+..++.+. ++++++++ .+.+++++ +|.+.+...+++.++.
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV 200 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence 4556 899999999988 7 677777777 88888864 47788655 5777777777776644
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.45 E-value=1.3e-13 Score=139.95 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=53.7
Q ss_pred HHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCC---CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~---p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
.++++.++|+............. +.+++.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.+|+
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 56788889876210000111111 2233999999997 5 59999999999 9999999988 89999987788887
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
+|
T Consensus 903 vi 904 (972)
T 2r6f_A 903 VI 904 (972)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=6e-15 Score=130.97 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
.|.++|+||||||||||+++|+|+..|++|+|.+.|.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 378999999999999999999999999999999998765
No 77
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.42 E-value=1.3e-13 Score=118.80 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=67.3
Q ss_pred eEEEEEcCCCccHHHHHHHHH--cCCCCCCceEEEeccCCcC------CCCCCCc-------ccChhhhhhHHHHH---H
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELISLEDVM---E 64 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~--g~l~~~~G~v~i~~~d~~~------~~~~y~~-------~~~i~~~i~~~~~m---~ 64 (268)
.+++|+||||||||||+++++ |.+.+.+|.+++.+.++.. ..+++.+ .+++.+........ +
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 478999999999999999999 6646667777776655421 1222211 11111111110000 0
Q ss_pred Hh-CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CC----HHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 65 EL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE----LFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 65 ~~-~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD----~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.+ .+.+. ....+...+...+... +|+++++|||++ +| +...+..+..+++.+++.|.+++++
T Consensus 111 ~~~~~~~~---------~~~~~~~~~~~~l~~~-~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 111 KFVLEDRF---------NVDNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILT 178 (251)
T ss_dssp -------C---------CHHHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEE
T ss_pred ceeccCcc---------cHHHHHHHHHHHHHhh-CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 00 00000 0111112222233222 899999999999 86 3344443448999998778888766
No 78
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.41 E-value=3.7e-13 Score=137.11 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHHHhCCCCCCChhhhHhhhh-hhHHHHHHHHHhcCCC---CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEE
Q 024360 60 EDVMEELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (268)
Q Consensus 60 ~~~m~~~~L~~~g~~~~~~~~~~-~~ls~~la~al~~~~~---p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii 134 (268)
.++++.++|+............. +.+++.||++|+. + |+++||||||+ ||+..+..++ ++++++++.|.+|+
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 46777888865210000111111 2233999999997 5 59999999999 9999999988 89999987788887
Q ss_pred EE
Q 024360 135 AV 136 (268)
Q Consensus 135 ~v 136 (268)
+|
T Consensus 921 vi 922 (993)
T 2ygr_A 921 VI 922 (993)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 79
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.35 E-value=2.2e-12 Score=116.36 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=86.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-------------CCCCC-Ccc------cChhhhhhHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PVA------MDIRELISLEDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-------------~~~~y-~~~------~~i~~~i~~~~~ 62 (268)
.+++|+|||||||||+++.|+|+++|++|+|.+.|.|+.. ..+++ ++. .++++++.....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999998732 12444 222 233444432111
Q ss_pred HHHhC---CCCCCChhhhHhhhhh---hHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHh-CCCeEEE
Q 024360 63 MEELG---LGPNGGLIYCMEHLED---NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVCA 135 (268)
Q Consensus 63 m~~~~---L~~~g~~~~~~~~~~~---~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~-~~~~ii~ 135 (268)
.... +...|... ....... .++.++||++.. +|+.+++ .||+.+...++ +.++.+.+ .+.++++
T Consensus 183 -~~~d~~llDt~G~~~-~~~~~~~eLs~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~ii 253 (304)
T 1rj9_A 183 -RGYDLLFVDTAGRLH-TKHNLMEELKKVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGVI 253 (304)
T ss_dssp -HTCSEEEECCCCCCT-TCHHHHHHHHHHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEEE
T ss_pred -CCCCEEEecCCCCCC-chHHHHHHHHHHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEEE
Confidence 1111 11111110 0122222 234889999999 9994333 34444444555 55555553 3677666
Q ss_pred EEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 136 VYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 136 v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
+.-.|... .....+ +....++.|..-|-
T Consensus 254 vTh~d~~a--~gg~~l-------~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 254 VTKLDGTA--KGGVLI-------PIVRTLKVPIKFVG 281 (304)
T ss_dssp EECTTSSC--CCTTHH-------HHHHHHCCCEEEEE
T ss_pred EECCcccc--cccHHH-------HHHHHHCCCeEEEe
Confidence 53334321 122222 33445788886554
No 80
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.35 E-value=1.6e-12 Score=117.63 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHHHhc--CCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~--~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||++++. ..+|+++|||||++ ||+..+..+. ++++.+. .+.+++++
T Consensus 228 v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~ 278 (322)
T 1e69_A 228 VGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI 278 (322)
T ss_dssp HHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence 889998862 11789999999999 9999998888 8888884 46666655
No 81
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=1.8e-12 Score=119.26 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=69.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
-+++|+||||||||||+++++|++++. +|.|.. ..||..-.. ...... +. +...+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t-~ed~~e~~~--~~~~~~---v~------q~~~~~~---------- 181 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT-IEDPIEFVH--ESKKCL---VN------QREVHRD---------- 181 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCC--CCSSSE---EE------EEEBTTT----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE-ccCcHHhhh--hccccc---ee------eeeeccc----------
Confidence 368999999999999999999999987 455544 444432111 100000 00 0000110
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
...+..+|+++|.. +|+++++|||+ |..+ + +++.++...|++++++. |... ....+++++.
T Consensus 182 ~~~~~~~La~aL~~--~PdvillDEp~--d~e~----~-~~~~~~~~~G~~vl~t~----H~~~-~~~~~dRli~ 242 (356)
T 3jvv_A 182 TLGFSEALRSALRE--DPDIILVGEMR--DLET----I-RLALTAAETGHLVFGTL----HTTS-AAKTIDRVVD 242 (356)
T ss_dssp BSCHHHHHHHHTTS--CCSEEEESCCC--SHHH----H-HHHHHHHHTTCEEEEEE----SCSS-HHHHHHHHHH
T ss_pred cCCHHHHHHHHhhh--CcCEEecCCCC--CHHH----H-HHHHHHHhcCCEEEEEE----ccCh-HHHHHHHHhh
Confidence 11233689999999 99999999999 4443 3 33334455688775552 3322 2355665554
No 82
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.34 E-value=2.4e-12 Score=109.33 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-------CCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-------~~G~v~i~~~d 39 (268)
.+++|+||||||||||+++|+|...+ ..|.+++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 57899999999999999999996554 34466666654
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=3e-12 Score=103.61 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=65.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.++|+||||||||||++++++.+.+ +| .+++.+.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------------------- 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------------------- 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence 6789999999999999999998876 45 455544332111
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCe-EEEEEecccccccCHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFISG 153 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~-ii~v~l~d~~~~~d~~~~~s~ 153 (268)
++.. +|+++++|||+.++......++ .+++.+.++|.+ ++++.-.....+.....+.|+
T Consensus 79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SR 138 (149)
T 2kjq_A 79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTR 138 (149)
T ss_dssp ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHH
T ss_pred ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHHH
Confidence 1234 7999999999997666665555 888888766666 555543233323322445543
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.30 E-value=2.2e-12 Score=131.58 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=66.3
Q ss_pred eEEEEEcCCCccHHHHHHHH--------HcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCCh
Q 024360 3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l--------~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~ 74 (268)
-+++|+||||||||||+|++ .|...|..+... + +. + .++..+|+..+.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~--~--~~-d-----------------~i~~~ig~~d~l-- 718 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV--S--IV-D-----------------CILARVGAGDSQ-- 718 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE--E--CC-S-----------------EEEEECC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc--h--HH-H-----------------HHHHhcCchhhH--
Confidence 47899999999999999999 665544433210 0 00 0 011111111110
Q ss_pred hhhHhhhhhhHHHHHHHHH--hcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 75 ~~~~~~~~~~ls~~la~al--~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
......+...+ ..+++++ +. +|+++||||||+ +|+.....+.+.+++.+.+ .|.+++++
T Consensus 719 ~~~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a 781 (934)
T 3thx_A 719 LKGVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781 (934)
T ss_dssp ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHhHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 00012333333 5566666 55 999999999999 9999998887689999976 47777655
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.29 E-value=1.8e-13 Score=123.91 Aligned_cols=106 Identities=13% Similarity=-0.016 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEeccCCcC------CCCCCCcccCh---hhhhhHHHHHHHhCCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPVAMDI---RELISLEDVMEELGLGP 70 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~~d~~~------~~~~y~~~~~i---~~~i~~~~~m~~~~L~~ 70 (268)
..++||+||||||||||+++|+|+++|..| .|.+..+|+.- +++.+...... .+.-.+.++++.++ ..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG 168 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC
Confidence 368999999999999999999999998766 46666555421 11111100000 01112556777766 22
Q ss_pred CCChhhhHhhhhhh--HHHHHHHHHhcCCCCCEEEEeCCCc-CCH
Q 024360 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (268)
Q Consensus 71 ~g~~~~~~~~~~~~--ls~~la~al~~~~~p~~lilDEP~~-LD~ 112 (268)
... .. ...+... .++.+|++++. +|+++|+|||+. .|.
T Consensus 169 ~~~-~~-~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDY-AC-APVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp CSC-EE-EEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred ccc-CC-cccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 210 00 0111111 11567788888 999999999999 764
No 86
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.29 E-value=6.1e-12 Score=116.05 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=41.7
Q ss_pred HHHHHHHh------cCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~------~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||++++ . +|+++||||||+ ||+..+..++ ++++.+++.|.++++|
T Consensus 288 ~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~i 341 (365)
T 3qf7_A 288 ISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFI 341 (365)
T ss_dssp HHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEE
T ss_pred HHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 78888888 6 999999999999 9999999988 8899987778888766
No 87
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.27 E-value=1.9e-11 Score=103.52 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=70.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCC---------
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG--------- 73 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~--------- 73 (268)
.+++|+||||||||||++.+++...+.+|+|.+.+.+...+. +...+..++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS--------------IIRQAKQFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH--------------HHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH--------------HHHHHHHhcchHHHHhhCCEEEEe
Confidence 468999999999999999999988888889998876542110 000011111111000
Q ss_pred -------hhhhHhh-hhhhHHHHHHH-HHhcCCCCC--EEEEeCCCc-C--CHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 024360 74 -------LIYCMEH-LEDNLDDWLAE-ELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (268)
Q Consensus 74 -------~~~~~~~-~~~~ls~~la~-al~~~~~p~--~lilDEP~~-L--D~~~~~~i~~~ll~~l~-~~~~~ii~v 136 (268)
..+..+. ....+...+.. .... +|+ ++++|||++ + |+...+.++ +.++.+. +.+.+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~ 164 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYAT 164 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEE
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEE
Confidence 0000000 11122122222 2234 899 999999998 6 988888888 6677765 457777665
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.25 E-value=3.7e-12 Score=129.68 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
..++++ +. +|+++||||||+ +|+.....+.+.+++.+.+ .|.+++++
T Consensus 744 ~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 744 AEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp HHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 334444 55 999999999999 9999998888789998865 57777655
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.24 E-value=2.7e-12 Score=132.17 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=69.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC--Cc-eEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~--~G-~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~ 79 (268)
-+++|+||||||||||+|++ |++.+. -| -| |+.. ..+++.+.+. ..+|+..+.. ....
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~V------pq~~-----~~l~v~d~I~-----~rig~~d~~~--~~~s 850 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYV------PAEV-----CRLTPIDRVF-----TRLGASDRIM--SGES 850 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCE------ESSE-----EEECCCSBEE-----EECC-----------C
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEe------ccCc-----CCCCHHHHHH-----HHcCCHHHHh--hchh
Confidence 47899999999999999999 887542 12 11 1110 1223333321 1222222110 0012
Q ss_pred hhhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 024360 80 HLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (268)
Q Consensus 80 ~~~~~ls-~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~-~~~ii~v 136 (268)
.+...++ ++++++++. +|+++|+||||+ +|+.....+.+.+++.+.+. |.+++++
T Consensus 851 tf~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~ 908 (1022)
T 2o8b_B 851 TFFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS 908 (1022)
T ss_dssp HHHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred hhHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3333443 677778888 999999999999 99998666555999999865 7777655
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.24 E-value=3.3e-12 Score=123.04 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=77.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCce-EEEeccCCcCCCCCC--CcccChhhhhhHHHHHHHhCCCCCCChhhhHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~-v~i~~~d~~~~~~~y--~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~ 79 (268)
-+++|+||||||||||++.++|...+.+++ +++.+.++..+-... ...++ ++++. ..|+-.... .+..+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~-~~p~~ 353 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVC-AYPES 353 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECC-CCGGG
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEE-ecccc
Confidence 478999999999999999999998876434 455555542100000 00111 22221 222211100 00011
Q ss_pred hhh-hhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHH-----hHHHHHHHHHHHHHhCCCeEEEE
Q 024360 80 HLE-DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 80 ~~~-~~ls~~la~al~~~~~p~~lilDEP~~-LD~~-----~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
... +.+++.+|+++.. +|+++|+| |++ +|.. .+..+. ++++.+++.|.+++++
T Consensus 354 LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFT 413 (525)
T ss_dssp SCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 122 2344888888888 99999999 999 9998 777777 8999998888887766
No 91
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.23 E-value=1.1e-11 Score=112.86 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC-----------CCCC--C-C------cccChhhhhhHHH
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFD--Y-P------VAMDIRELISLED 61 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~-----------~~~~--y-~------~~~~i~~~i~~~~ 61 (268)
+.+++|+|||||||||+++.|+|+++|.+|+|.+.|.|+.+ +.++ + . +..++++++....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998732 1111 2 1 2233444443211
Q ss_pred HHHHhC---CCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 024360 62 VMEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (268)
Q Consensus 62 ~m~~~~---L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~-~~~~~ii~v~ 137 (268)
. .... +...|.. .....+...+ ..+++++.. ++.++++|.+++. .++ +.++.+. +.+.+.+++.
T Consensus 209 ~-~~~d~vliDtaG~~-~~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 209 A-RGIDVVLIDTAGRS-ETNRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILT 276 (328)
T ss_dssp H-HTCSEEEEEECCSC-CTTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEE
T ss_pred h-ccchhhHHhhccch-hHHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEe
Confidence 0 0111 0111110 0023444555 557788877 7788888866653 334 4455555 3477777665
Q ss_pred ecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 138 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 138 l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
-+|...- ... ..+.....+.|..-+-
T Consensus 277 KlD~~a~--~G~-------~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 277 KLDADAR--GGA-------ALSISYVIDAPILFVG 302 (328)
T ss_dssp CGGGCSC--CHH-------HHHHHHHHTCCEEEEE
T ss_pred CcCCccc--hhH-------HHHHHHHHCCCEEEEe
Confidence 5664321 111 2344556788887544
No 92
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.23 E-value=2e-11 Score=112.91 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=74.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
-+++|+|||||||||++++|+|++++. +|+|.+.+.+.. ..+.....+-.. ..+|+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e---~~~~~~~~~v~Q-------~~~g~~~----------- 195 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE---YVFKHKKSIVNQ-------REVGEDT----------- 195 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC---SCCCCSSSEEEE-------EEBTTTB-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh---hhhccCceEEEe-------eecCCCH-----------
Confidence 468999999999999999999999987 899988775331 111111110000 0122222
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
..++..|+++|.. +|+++++|||+ |..... ..++.. ..|.+++++ +|. .+...++++++.
T Consensus 196 -~~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~ 255 (372)
T 2ewv_A 196 -KSFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVD 255 (372)
T ss_dssp -SCSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHH
Confidence 1235788999998 99999999999 554432 334443 446665433 333 446666666543
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.22 E-value=1.7e-11 Score=101.03 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=61.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCce-EEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~-v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.+++|+||||||||||++++++.+.+..|. +.+ ++..+.+. .+...+.-+.. .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~~~~~~~--~~~~~~~~~~~-------~-- 92 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FDTKDLIF--RLKHLMDEGKD-------T-- 92 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EEHHHHHH--HHHHHHHHTCC-------S--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EEHHHHHH--HHHHHhcCchH-------H--
Confidence 468999999999999999999988765552 221 12222211 11111110000 0
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
..+ .... +|++|++|||+. +|...+..+. ++++...+++.+++++
T Consensus 93 -----~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 93 -----KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIIT 139 (180)
T ss_dssp -----HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred -----HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEE
Confidence 111 1124 799999999984 8998887666 8888877667777655
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.22 E-value=6e-12 Score=112.03 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=69.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-eEEEeccCCcCCC----C-CCCcc--cChhhhhh--------HHHHHHH-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN----F-DYPVA--MDIRELIS--------LEDVMEE- 65 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~v~i~~~d~~~~~----~-~y~~~--~~i~~~i~--------~~~~m~~- 65 (268)
-+++|+||||||||||++.++|.+.+.+| +|.+.+....... + .+.+. +...+.+. ..+..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 47899999999999999999999998877 8877765432110 0 00011 11111111 1112221
Q ss_pred ---hCC--CCCCChhhhHhhhhhhHH-HHHHHHHhcCCCCCEEEEeCCCc-CC------H-HhHHHHHHHHHHHHHh-CC
Q 024360 66 ---LGL--GPNGGLIYCMEHLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RN 130 (268)
Q Consensus 66 ---~~L--~~~g~~~~~~~~~~~~ls-~~la~al~~~~~p~~lilDEP~~-LD------~-~~~~~i~~~ll~~l~~-~~ 130 (268)
.++ .... .+....++. ...++++.. +|+++|+|||+. ++ . .....++ +.++.+++ .+
T Consensus 116 l~~~~l~i~~~~-----~~~~~~~l~~~~~a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~ 187 (296)
T 1cr0_A 116 FGNDTFHLYDSF-----AEAETDRLLAKLAYMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTG 187 (296)
T ss_dssp HSSSCEEEECCC-----CSCCHHHHHHHHHHHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHC
T ss_pred hccCCEEEECCC-----CCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhC
Confidence 121 1110 012223331 112555667 999999999999 43 2 3344555 66777764 48
Q ss_pred CeEEEE
Q 024360 131 FNVCAV 136 (268)
Q Consensus 131 ~~ii~v 136 (268)
.+++++
T Consensus 188 ~~vi~v 193 (296)
T 1cr0_A 188 VVLVVI 193 (296)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 888766
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.19 E-value=3.5e-11 Score=115.82 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=76.1
Q ss_pred eEEEEEcCCCccHHHHHHH--HHcCCCCCCceEEEeccCCcC------CCCCCC-cccChhhhhhHHHHHHHhCCCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDYP-VAMDIRELISLEDVMEELGLGPNGG 73 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~--l~g~l~~~~G~v~i~~~d~~~------~~~~y~-~~~~i~~~i~~~~~m~~~~L~~~g~ 73 (268)
-+++|+||||||||||+++ ++|+.+|.+|.|++.|.+... ..++|. ++.....++. .+...+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~------~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF------ILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE------EEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE------EEecCcccc
Confidence 4689999999999999999 789999999999999977421 122321 1100000000 000000000
Q ss_pred hhhhH-hhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-C-----CHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 74 LIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-I-----ELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 74 ~~~~~-~~~~~~ls~~la~al~~~~~p~~lilDEP~~-L-----D~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
....+ ..-...+...+..+|... +|+.+++|||++ . |+..++.++ ++++.+++.|.+++++
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~i 181 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMT 181 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEE
T ss_pred hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 00000 000111224455566422 899999999987 3 777887777 9999998778887766
No 96
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.17 E-value=1.5e-11 Score=112.70 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--CCCC----ce-EEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--~~~~----G~-v~i~~~d~ 40 (268)
-+++|+||||||||||++.+++.. +|+. |+ |++.+.+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 478999999999999999999988 5555 67 77777653
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=2.4e-12 Score=108.38 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
+++|+||||||||||++.|+|+++ ++| |.+.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 579999999999999999999999 889 88888654
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.13 E-value=3e-11 Score=106.80 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=69.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC----------CceEEEe-ccCCcCCCCCCCc--ccChhhhhhHHHHHHHhCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----------RRTMHIV-NLDPAAENFDYPV--AMDIRELISLEDVMEELGLG 69 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~----------~G~v~i~-~~d~~~~~~~y~~--~~~i~~~i~~~~~m~~~~L~ 69 (268)
.+++|+||||||||||++.+++.+..- .|.+.+. ..++..+-..... ..++ +.....++++.+++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~-~~~~~~~~~~~l~l~ 109 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHL-SAEERQAVADGLLIQ 109 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTS-CHHHHHHHHHHEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhc-ChhhhhhccCceEEe
Confidence 468999999999999999999865431 2333222 1111100000000 0000 001133456666665
Q ss_pred CCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc---CCHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 024360 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (268)
Q Consensus 70 ~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~---LD~~~~---~~i~~~ll~~l~-~~~~~ii~v~ 137 (268)
+..... ...+.... ...+++++. +|+++|+|||++ +|.... ..++ ..++.+. +.|.++++++
T Consensus 110 ~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 110 PLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp CCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred ecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 431100 11111222 445567788 999999999998 555333 5666 6666664 4588887774
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.13 E-value=2.5e-11 Score=121.68 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccCCcC-CCCCC----CcccChhhhhhHHHHHHHhCCCCCCChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d~~~-~~~~y----~~~~~i~~~i~~~~~m~~~~L~~~g~~~~ 76 (268)
-+++|+||||||||||+|+++|+.. ++.|.+. |+. ..+++ .+.+++.+++.. ++
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~-------- 636 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK-------- 636 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--------
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--------
Confidence 3689999999999999999999864 6677542 221 12333 123344443211 11
Q ss_pred hHhhhhhhHHHHHHHHH--hcCCCCCEEEEeCC---Cc-CCHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 024360 77 CMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 77 ~~~~~~~~ls~~la~al--~~~~~p~~lilDEP---~~-LD~~~~~-~i~~~ll~~l~~~~~~ii~v 136 (268)
.....++ ..+++++ +. +|+++|+||| |+ +|..+.. .++ +.+. +.|.+++++
T Consensus 637 --S~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~---~~g~~vl~~ 694 (765)
T 1ewq_A 637 --STFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALH---ERRAYTLFA 694 (765)
T ss_dssp --SHHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHH---HHTCEEEEE
T ss_pred --cHHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHH---hCCCEEEEE
Confidence 1122223 5667777 66 9999999999 88 9987753 344 4333 346666554
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.12 E-value=1.3e-12 Score=110.33 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhh-------------hhHHHHHHHhCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL 68 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~-------------i~~~~~m~~~~L 68 (268)
+.+++|+||||||||||+++|+|++.| .+.+...|+...... .++++++ -.+.+.++.+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG---HLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT---TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc---cccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 368999999999999999999998765 566666665321111 1122211 124566677666
Q ss_pred CCCCChhhhHhhhhh-----hHHHHHHHHHhcCCCCCEEEEeCCCc--------CCHHhHHHHHHHHHHH-HHhCCCeE
Q 024360 69 GPNGGLIYCMEHLED-----NLDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDH-LKSRNFNV 133 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~-----~ls~~la~al~~~~~p~~lilDEP~~--------LD~~~~~~i~~~ll~~-l~~~~~~i 133 (268)
+..... ...+...+ ..++.++++++. +|.++++|||++ ||......+. +.+++ .++.|.++
T Consensus 80 ~~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 80 GLPVEM-PVYDFRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL 154 (211)
T ss_dssp TCCEEE-CCEETTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred CCCcCC-CcccCcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence 543100 00011111 011234555666 777777788865 5776666666 44444 34456654
No 101
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.12 E-value=1.6e-10 Score=105.24 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+++|++++. +|+++|+|||++ ||+..+..++ ++++.+.+.+.+++++
T Consensus 263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~ 310 (339)
T 3qkt_A 263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 310 (339)
T ss_dssp HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 567788888 999999999999 9999998888 8888886667777655
No 102
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.08 E-value=1.7e-09 Score=97.41 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+.+.. ..+. +..+.+..++....... ..-
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~--------a~eq--L~~~~~~~gl~~~~~~s---~~~ 170 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA--------AIEQ--LKIWGERVGATVISHSE---GAD 170 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH--------HHHH--HHHHHHHHTCEEECCST---TCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH--------HHHH--HHHHHHHcCCcEEecCC---ccC
Confidence 4689999999999999999999999999999999998863210 1111 23455666653210000 000
Q ss_pred hhhH-HHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 82 ~~~l-s~~la~al~~~~~p~~lilDEP~~ 109 (268)
+... ..++++++.. +++++|+|||+.
T Consensus 171 ~~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 171 PAAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 0011 1467788888 999999999997
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.08 E-value=5.4e-11 Score=119.79 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=62.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEeccCCcC-CCCCC----CcccChhhhhhHHHHHHHhCCCCCCChhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDY----PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~~~d~~~-~~~~y----~~~~~i~~~i~~~~~m~~~~L~~~g~~~~ 76 (268)
-+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++ ...+++.+++. .++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~-------~~~st------ 669 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLA-------SGRST------ 669 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHH-------hhhhh------
Confidence 4789999999999999999999642 222310 0111 11222 11223333221 01111
Q ss_pred hHhhhhhhHHHHHHHH--HhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 024360 77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 77 ~~~~~~~~ls~~la~a--l~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~-~~~~ii~v 136 (268)
+...+ ..++.+ .+. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 670 ----f~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 670 ----FMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ----hhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 11112 222333 355 999999999998 9988777765588999976 47777655
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.06 E-value=1e-09 Score=92.32 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=63.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhh-----hhHHHHHHHhCCCCCCChhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-----ISLEDVMEELGLGPNGGLIYC 77 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~-----i~~~~~m~~~~L~~~g~~~~~ 77 (268)
.+++|+||||||||||++.+++ ..++.+.+...+.. .. + ..+++. +..+++++.+.+....+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGG---FS--P-ERLVQMAETRGLNPEEALSRFILFTPSD---- 87 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCC---CC--H-HHHHHHHHTTTCCHHHHHHHEEEECCTT----
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCC---CC--H-HHHHHHHHhcCCChHHHhhcEEEEecCC----
Confidence 4689999999999999999999 34455655543321 00 0 001110 01122333322211100
Q ss_pred HhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 024360 78 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (268)
Q Consensus 78 ~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~--------~~i~~~ll~~l~~-~~~~ii~v~ 137 (268)
.+.. ... ...++++... +|+++|+|||++ +|.... ..++ +.++.+.+ .+.++++++
T Consensus 88 ~~~~-~~~-~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 88 FKEQ-RRV-IGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp TSHH-HHH-HHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred HHHH-HHH-HHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 0000 111 4456677762 499999999999 887432 2233 33555543 377777663
No 105
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.05 E-value=6.5e-12 Score=107.53 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=29.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
.+++|+||||||||||+++|+|++ | |+|.+ |.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~ 57 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC 57 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence 468999999999999999999998 5 99988 6653
No 106
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.05 E-value=2e-09 Score=96.39 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+.+++++|+|||||||+++.+++++.+.+|+|.+.+.|+..... . +. +..+.+..++....+. ....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~-------~-~q--l~~~~~~~~l~~~~~~---~~~~ 164 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA-------R-EQ--LRLLGEKVGVPVLEVM---DGES 164 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH-------H-HH--HHHHHHHHTCCEEECC---TTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH-------H-HH--HHHhcccCCeEEEEcC---CCCC
Confidence 35788999999999999999999999999999999998743110 1 11 2234455565321100 0111
Q ss_pred hhhH-HHHHHHHHhcCCCCCEEEEeCC-Cc-CCHHhHHHHHHHHHHHH
Q 024360 82 EDNL-DDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 82 ~~~l-s~~la~al~~~~~p~~lilDEP-~~-LD~~~~~~i~~~ll~~l 126 (268)
+..+ +.+++.+... +++++|+||| +. +|......+. .+.+.+
T Consensus 165 p~~l~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 165 PESIRRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 1122 3566766667 8999999999 44 8877666655 665555
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=2.3e-09 Score=97.70 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
.+++|+||||||||||+++|+|++.|++|+|.+.+.++..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 5799999999999999999999999999999999999854
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.02 E-value=3.6e-11 Score=103.39 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=34.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC--CCceEEEeccCCc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPA 41 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~--~~G~v~i~~~d~~ 41 (268)
-+++|+||||||||||+++|+|.++| ..|.|.+.+.++.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~ 57 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 57 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC
Confidence 47899999999999999999999985 6888988887664
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.02 E-value=3e-09 Score=90.88 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc--CCCC-----CCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g--~l~~-----~~G~v~i~~~d 39 (268)
.+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4789999999999999999999 4554 45667776654
No 110
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.01 E-value=1.3e-11 Score=107.17 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.3
Q ss_pred eEEEEEcCCCccHHHHHHHHH---cCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~---g~l~~~~G~v~i~~~d 39 (268)
.+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 579999999999999999999 9999999998877653
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.01 E-value=9e-10 Score=98.86 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC-CCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~-l~~~~G~v~i~~~d 39 (268)
+-++|+||||||||||++.|.|. +.|.+| +.+.|.+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 56799999999999999999998 888888 6665544
No 112
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.99 E-value=2.7e-09 Score=97.72 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=96.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhh-----h
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY-----C 77 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~-----~ 77 (268)
..++|+|++|||||||++.+.|.+.+.+|+|.+.+.||..... ....+.-...|+.++..+.. .+. |
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~-------~g~~l~d~~rm~~~~~~~~~-~v~~~~~~~ 146 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTS-------GGSLLGDKTRMTELSRDMNA-YIRPSPTRG 146 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTE-EEECC----
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCc-------CcchhchHHHHHHhcCCCCE-EEEecCCcc
Confidence 6799999999999999999999999999999999999865321 11111112233333332210 000 0
Q ss_pred -HhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 78 -MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 78 -~~~~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
+..........+...-.. +.+++|+|.||--+.. . .+ .+ ...+ +++++|+..-.+...+-
T Consensus 147 ~lgg~tr~~~~~~~~~~~~--~~~~iliDT~Gi~~~~-----~-~l----~~-~~d~-vl~V~d~~~~~~~~~i~----- 207 (349)
T 2www_A 147 TLGGVTRTTNEAILLCEGA--GYDIILIETVGVGQSE-----F-AV----AD-MVDM-FVLLLPPAGGDELQGIK----- 207 (349)
T ss_dssp -----CTTHHHHHHHHHHT--TCSEEEEECCCC--CH-----H-HH----HT-TCSE-EEEEECCC--------------
T ss_pred ccccchHHHHHHHHhhccC--CCCEEEEECCCcchhh-----h-hH----Hh-hCCE-EEEEEcCCcchhHHHhH-----
Confidence 000001110111111123 6799999999953221 1 11 12 2222 44456654321111110
Q ss_pred HHHHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhh--hcCCeeeEEeeccCh
Q 024360 157 SLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKE 234 (268)
Q Consensus 157 ~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~--~~~~~~~~~l~~~~~ 234 (268)
.. .++.|.+.|+||+|+.... .... . ...+...+..... ...-..++++|+.++
T Consensus 208 --~~--il~~~~ivVlNK~Dl~~~~-~~~~----~---------------~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g 263 (349)
T 2www_A 208 --RG--IIEMADLVAVTKSDGDLIV-PARR----I---------------QAEYVSALKLLRKRSQVWKPKVIRISARSG 263 (349)
T ss_dssp -------CCSCSEEEECCCSGGGHH-HHHH----H---------------HHHHHHHHTTCC-----CCCEEEECCTTTC
T ss_pred --HH--HHhcCCEEEEeeecCCCch-hHHH----H---------------HHHHHHHHHhcCccccCCCceEEEEecCCC
Confidence 01 1367899999999996432 0100 0 0111111100000 001146788999999
Q ss_pred hhHHHHHHHHHHhhhc
Q 024360 235 SSIRYVLSQIDNCIQW 250 (268)
Q Consensus 235 ~~~~~l~~~id~~~~~ 250 (268)
+++..++..|.+...+
T Consensus 264 ~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 264 EGISEMWDKMKDFQDL 279 (349)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999886543
No 113
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.2e-09 Score=98.92 Aligned_cols=116 Identities=15% Similarity=0.243 Sum_probs=58.4
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCCceEEEeccCCcC-----CCCCCCc----------ccChhhhhhHHHHHHHhCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPV----------AMDIRELISLEDVMEELGL 68 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g-~l~~~~G~v~i~~~d~~~-----~~~~y~~----------~~~i~~~i~~~~~m~~~~L 68 (268)
+.|.||||+||||+++++++ ++.+..|.+.+.|.+... ..+.+.+ .....+...+++.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 788999999887754321 1111100 0000000012333333221
Q ss_pred CCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 69 ~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
... ++... .+| .+.. +|+++|+|||+++|......+. ++++... .+.++|++
T Consensus 119 ~~~------~~~~~-~ls-----~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 119 MEQ------VDFQD-SKD-----GLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV 170 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred hcc------ccccc-ccc-----ccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence 110 00000 110 1345 8999999999999998877666 6666653 34455444
No 114
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.96 E-value=4.1e-10 Score=103.40 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=66.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC----ceEEEeccCCcCCCCCCCcccChhhhhhH--HHH-HHHhCCCCCCCh-
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL--EDV-MEELGLGPNGGL- 74 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~----G~v~i~~~d~~~~~~~y~~~~~i~~~i~~--~~~-m~~~~L~~~g~~- 74 (268)
..++|+||||||||||+++|+|+++|.. |++++.+..... ...+.. .+. +.+.. .+. ........+-..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999999 888764321111 111111 111 11211 000 000000111000
Q ss_pred -hhhHhhhh------hhHHHHHHHHHh-cCCCCCEEEEeC---CC------c-CCHHhHHHHHHHHHHHHH-hCCCeEEE
Q 024360 75 -IYCMEHLE------DNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA 135 (268)
Q Consensus 75 -~~~~~~~~------~~ls~~la~al~-~~~~p~~lilDE---P~------~-LD~~~~~~i~~~ll~~l~-~~~~~ii~ 135 (268)
....+... .....+++++.. . +|+++++|| |+ . +|...+..+. +.++++. +.+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 00001111 111145555543 5 899999999 64 4 7888888877 6666654 44677765
Q ss_pred E
Q 024360 136 V 136 (268)
Q Consensus 136 v 136 (268)
+
T Consensus 325 l 325 (365)
T 1lw7_A 325 I 325 (365)
T ss_dssp E
T ss_pred e
Confidence 5
No 115
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.92 E-value=9e-09 Score=98.14 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
..+++|+||||||||||++.|+|++++.+|+|.+.+.|+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 368999999999999999999999999999999998775
No 116
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.92 E-value=4.5e-10 Score=105.97 Aligned_cols=145 Identities=9% Similarity=-0.019 Sum_probs=83.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC---CcC------------CCCCC-Cc-ccChhhhhhHHHH---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-AMDIRELISLEDV--- 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d---~~~------------~~~~y-~~-~~~i~~~i~~~~~--- 62 (268)
-.++|+||||||||||+++|+|+.+|+.|.|.+.|.. ... +.+.| ++ +......+++.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999983 211 11223 22 2233333332221
Q ss_pred -HHHhCC-CCCC-ChhhhHhhhhhhH-HHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh---C-CC-e
Q 024360 63 -MEELGL-GPNG-GLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF-N 132 (268)
Q Consensus 63 -m~~~~L-~~~g-~~~~~~~~~~~~l-s~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~---~-~~-~ 132 (268)
.+.++- +..- .....+..+...+ ++++| +. +|++ ++ +|+..+..+. ++++++.+ . |. |
T Consensus 238 ~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~GsiT 305 (438)
T 2dpy_A 238 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSIT 305 (438)
T ss_dssp HHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEEE
T ss_pred HHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCccc
Confidence 122221 1110 0000111222222 14444 45 7877 88 9999998887 88888755 2 42 3
Q ss_pred EEEEEecccccccCHHHHHHHHHHHHHHH
Q 024360 133 VCAVYLLDSQFITDVTKFISGCMASLSAM 161 (268)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (268)
.+.+.++.+|.+. ..+++.++....+.
T Consensus 306 ~~~tVlv~tHdl~--~~iad~v~~l~dG~ 332 (438)
T 2dpy_A 306 AFYTVLTEGDDQQ--DPIADSARAILDGH 332 (438)
T ss_dssp EEEEEECSSSCSC--CHHHHHHHHHSSEE
T ss_pred ceeEEEEeCCCcc--chhhceEEEEeCcE
Confidence 3334456778877 45666666555443
No 117
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.91 E-value=4e-09 Score=96.13 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=98.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHh---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME--- 79 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~--- 79 (268)
.+++|+|+|||||||+++.|++.+.+.+|+|.+.+.||........ + +.-..-++.+...+++ .+.+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~----i---l~d~~~~~~~~~~~~~-~i~~~~~~~ 128 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS----I---LGDKTRMNDLARAEAA-FIRPVPSSG 128 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTE-EEEEECC--
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcc----e---ecccchHHhhccCCCc-eeecCcccc
Confidence 5789999999999999999999999899999999999854321110 0 0001112222333332 110000
Q ss_pred hhhhhHH---HHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 80 HLEDNLD---DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 80 ~~~~~ls---~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
......+ ..+...-.. +.+++|+|.||..+.... . ...-.. + ++++|+..-.+...+
T Consensus 129 ~l~g~~~~~~~~~~~~~~~--~~~i~liDTpG~~~~~~~---~------~~~aD~-v--l~Vvd~~~~~~~~~l------ 188 (341)
T 2p67_A 129 HLGGASQRARELMLLCEAA--GYDVVIVETVGVGQSETE---V------ARMVDC-F--ISLQIAGGGDDLQGI------ 188 (341)
T ss_dssp ---CHHHHHHHHHHHHHHT--TCSEEEEEEECCTTHHHH---H------HTTCSE-E--EEEECC------CCC------
T ss_pred ccchhHHHHHHHHHHhhcc--CCCEEEEeCCCccchHHH---H------HHhCCE-E--EEEEeCCccHHHHHH------
Confidence 0001110 111111124 779999999997654321 1 112122 2 233454321111000
Q ss_pred HHHHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhh--cC-CeeeEEeeccC
Q 024360 157 SLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YS-MVSFMPLDLRK 233 (268)
Q Consensus 157 ~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~--~~-~~~~~~l~~~~ 233 (268)
.. -..+.|.+-|+||+|+.... .+.. ...+ +... ...+.. -+ ...++|+|+.+
T Consensus 189 -~~--~~~~~p~ivv~NK~Dl~~~~-~~~~--------~~~~-----------l~~~-l~~~~~~~~~~~~~vi~iSA~~ 244 (341)
T 2p67_A 189 -KK--GLMEVADLIVINKDDGDNHT-NVAI--------ARHM-----------YESA-LHILRRKYDEWQPRVLTCSALE 244 (341)
T ss_dssp -CH--HHHHHCSEEEECCCCTTCHH-HHHH--------HHHH-----------HHHH-HHHSCCSBTTBCCEEEECBGGG
T ss_pred -HH--hhhcccCEEEEECCCCCChH-HHHH--------HHHH-----------HHHH-HHhccccccCCCCcEEEeeCCC
Confidence 00 11356888899999996432 1110 0001 1001 111110 00 24678999999
Q ss_pred hhhHHHHHHHHHHhhh
Q 024360 234 ESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 234 ~~~~~~l~~~id~~~~ 249 (268)
++++..++..|.+...
T Consensus 245 g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 245 KRGIDEIWHAIIDFKT 260 (341)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 118
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.91 E-value=1.5e-09 Score=99.38 Aligned_cols=147 Identities=11% Similarity=0.074 Sum_probs=82.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC--CCCC------------C-C-cccChhhhhhH----HHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFD------------Y-P-VAMDIRELISL----EDV 62 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~--~~~~------------y-~-~~~~i~~~i~~----~~~ 62 (268)
.+++|+||||||||||+++|+|+.+|+.|.+.+.|.++.. +.+. + . .+....+.+.. ..+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ 151 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI 151 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998876311 0000 0 0 01112222221 111
Q ss_pred HHHh-CCCCCCCh-hhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHh--CC-CeEEEE
Q 024360 63 MEEL-GLGPNGGL-IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RN-FNVCAV 136 (268)
Q Consensus 63 m~~~-~L~~~g~~-~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~--~~-~~ii~v 136 (268)
.+.+ ..+.+--. ......+...+ ..++.+ +. +|++ +. +|+..+..+. ++++++.+ .| .|.+.+
T Consensus 152 ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~t 220 (347)
T 2obl_A 152 AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYT 220 (347)
T ss_dssp HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEE
T ss_pred HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEE
Confidence 1111 11110000 00112222222 223333 34 6666 77 9999998888 88888864 34 334444
Q ss_pred EecccccccCHHHHHHHHHHHHHHHH
Q 024360 137 YLLDSQFITDVTKFISGCMASLSAMV 162 (268)
Q Consensus 137 ~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (268)
.++.+|.+. ..+++.+.....+.+
T Consensus 221 Vl~~thdl~--~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 221 VLLESDNVN--DPIGDEVRSILDGHI 244 (347)
T ss_dssp EECCSSCCC--CHHHHHHHHHCSEEE
T ss_pred EEEeCCCCC--ChhhhheEEeeCcEE
Confidence 567788887 456776666555544
No 119
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.89 E-value=4.4e-10 Score=91.83 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=34.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
-+++|+||||||||||+++|+|++ |.+|+|.+.|.+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 478999999999999999999999 9999999988776
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.89 E-value=1.2e-07 Score=77.50 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCc----CCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 98 DDDYLVFDCPGQ----IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 98 ~p~~lilDEP~~----LD~~~~~~i~~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
+.++.++|.||- .+...+.. .+.+..... ......++++++|+..-...... .+ ....-..+.|.+-|+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~---~~~~~~~~~p~i~v~ 140 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERML-WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL--MM---VEWMKSLNIPFTIVL 140 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHH-HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HH---HHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCccccCChhhHHH-HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH--HH---HHHHHHcCCCEEEEE
Confidence 346889999993 22222222 224444332 22233445666775432222111 01 111123478999999
Q ss_pred ccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 173 sk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
||+|+.... .... ....+.+....++...++++|+.+++++.+++..|.+...
T Consensus 141 nK~Dl~~~~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 141 TKMDKVKMS-ERAK-----------------------KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECGGGSCGG-GHHH-----------------------HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred EChhcCChH-HHHH-----------------------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 999997543 1110 0112222344555578999999999999999999987653
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.89 E-value=6.4e-09 Score=95.61 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCC-CCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~-y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
..++|+||||||||||+++|+|+++|++|.|.+.|..... .. ....+ ..+...+. .++. ..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~--~~~~~~~v---~~v~~q~~----~~~~---------~~ 237 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF--LPDHPNHV---HLFYPSEA----KEEE---------NA 237 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC--CTTCSSEE---EEECC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC--ccccCCEE---EEeecCcc----cccc---------cc
Confidence 3689999999999999999999999999999998742110 10 00000 00000000 0000 01
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 158 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~ 158 (268)
...+...|+.++.. .|+.+++|||..- ... ++++.+.....+++.. .|. .++...+.++....
T Consensus 238 ~~t~~~~i~~~l~~--~pd~~l~~e~r~~------~~~-~~l~~l~~g~~~~l~t----~H~-~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 238 PVTAATLLRSCLRM--KPTRILLAELRGG------EAY-DFINVAASGHGGSITS----CHA-GSCELTFERLALMV 300 (361)
T ss_dssp -CCHHHHHHHHTTS--CCSEEEESCCCST------HHH-HHHHHHHTTCCSCEEE----EEC-SSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhc--CCCEEEEcCchHH------HHH-HHHHHHhcCCCeEEEE----ECC-CCHHHHHHHHHHHH
Confidence 11234677888888 9999999999862 233 5566665433333332 122 34556666654443
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.86 E-value=2.8e-07 Score=77.40 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCcCCH----HhHHHHHHHHHHH-HHhCCCeEEEEEecccccc-cCHHHHHHHHHHHHHHHHhhcCCeeEe
Q 024360 98 DDDYLVFDCPGQIEL----FTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNI 171 (268)
Q Consensus 98 ~p~~lilDEP~~LD~----~~~~~i~~~ll~~-l~~~~~~ii~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~p~i~v 171 (268)
+..+.|+|.||.-+. ..+..+. .++.. +......-++++++|+..- .+....+ ....-..+.|.+-|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~------~~~l~~~~~p~i~v 150 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWE-QLLSSYLQTRPQLCGMILMMDARRPLTELDRRM------IEWFAPTGKPIHSL 150 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH------HHHHGGGCCCEEEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHH-HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHH------HHHHHhcCCCEEEE
Confidence 467999999995221 1111111 33333 2222223234556676542 2111111 11122367899999
Q ss_pred eccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHh--hhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 172 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 172 lsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i--~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+||+|+.... ...... ..+.+.+.... .......++++|+.+++++.+++..|.+...
T Consensus 151 ~nK~Dl~~~~-~~~~~~-------------------~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 151 LTKCDKLTRQ-ESINAL-------------------RATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp EECGGGSCHH-HHHHHH-------------------HHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred EeccccCChh-hHHHHH-------------------HHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 9999997644 111110 11111111110 1124478999999999999999999988765
Q ss_pred c
Q 024360 250 W 250 (268)
Q Consensus 250 ~ 250 (268)
.
T Consensus 211 ~ 211 (223)
T 4dhe_A 211 P 211 (223)
T ss_dssp -
T ss_pred c
Confidence 4
No 123
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=5e-09 Score=93.89 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=57.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-eEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.+++++|||||||||+++.|++++.+.+| +|.+.+.|+.+ ....+.+. .+.+..++..... ..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL~--~~~~~~gl~~~~~------~~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQLK--TYAELLQAPLEVC------YT 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHHH--HHHTTTTCCCCBC------SS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHHH--HHHHhcCCCeEec------CC
Confidence 47899999999999999999999988667 89999988732 12233221 2223344432211 11
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~ 109 (268)
...++.++++ .. +++++|+|+|+-
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G~ 193 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAGR 193 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence 2334455553 36 899999997765
No 124
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=2.2e-09 Score=100.72 Aligned_cols=126 Identities=16% Similarity=0.242 Sum_probs=61.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEeccCCc-CCCCC-------CCcccChhhhhhHHHHHHHhCCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPA-AENFD-------YPVAMDIRELISLEDVMEELGLGPNG 72 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~~d~~-~~~~~-------y~~~~~i~~~i~~~~~m~~~~L~~~g 72 (268)
+-++|+||||||||||+++|+|...+..| .+.+.+.... ...+. ....+++.|++........ -....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~--~~~~~ 109 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN--SNCWQ 109 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-------------CH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc--hhhHH
Confidence 45799999999999999999999875433 1111110000 00111 1223455555433221100 00000
Q ss_pred ChhhhHhhhhhhHH------HHHHHHHhcCCCCC---EEEEeCCC-c-CCHHhHHHHHHHHHHHHHhCCCeEEEE-Eecc
Q 024360 73 GLIYCMEHLEDNLD------DWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLD 140 (268)
Q Consensus 73 ~~~~~~~~~~~~ls------~~la~al~~~~~p~---~lilDEP~-~-LD~~~~~~i~~~ll~~l~~~~~~ii~v-~l~d 140 (268)
. ..++....++ +.|++++.. +|+ ++++|||| . +++... .+++.+.. +.++|.| +=.|
T Consensus 110 ~---i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 110 P---VIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp H---HHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEESTT
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEccc
Confidence 0 0011111111 346777777 899 99999998 5 987753 44555644 5555544 5455
Q ss_pred c
Q 024360 141 S 141 (268)
Q Consensus 141 ~ 141 (268)
.
T Consensus 179 l 179 (418)
T 2qag_C 179 T 179 (418)
T ss_dssp S
T ss_pred C
Confidence 4
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.83 E-value=1.4e-08 Score=94.73 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred eEEEEEcCCCccHHHHHHHH--HcCCCCCC-----ceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCC----
Q 024360 3 YAQLVIGPAGSGKSTYCSSL--YRHCETVR-----RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN---- 71 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l--~g~l~~~~-----G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~---- 71 (268)
-+++|+||||||||||++.+ .+..++.. +.+++.+.+... ...+..+.+.+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~-------------~~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR-------------PVRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-------------HHHHHHHHHHTTCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC-------------HHHHHHHHHHcCCChHhHhh
Confidence 46899999999999999954 56665532 256666544211 0112223344444321
Q ss_pred -CChh--hhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 024360 72 -GGLI--YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC 134 (268)
Q Consensus 72 -g~~~--~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~------------~~i~~~ll~~l~~-~~~~ii 134 (268)
.... +..+.....+ ..+...+... +|+++++|+|+. ++.... ..++ ..++++++ .+.+++
T Consensus 246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI 322 (400)
T 3lda_A 246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV 322 (400)
T ss_dssp TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence 0000 0001111111 1112222222 799999999999 775322 3445 55666654 488887
Q ss_pred EEE
Q 024360 135 AVY 137 (268)
Q Consensus 135 ~v~ 137 (268)
++.
T Consensus 323 lv~ 325 (400)
T 3lda_A 323 VTN 325 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 126
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.81 E-value=1.3e-07 Score=81.09 Aligned_cols=129 Identities=13% Similarity=0.224 Sum_probs=59.2
Q ss_pred CCCEEEEeCCCcCCHHhH-HHHHHHHHHHHHh--CCCeEEEEEecccccccCH-HHHHHHHHHHHHHHHhhcCCeeEeec
Q 024360 98 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKS--RNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILS 173 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~-~~i~~~ll~~l~~--~~~~ii~v~l~d~~~~~d~-~~~~s~~l~~~~~~~~~~~p~i~vls 173 (268)
+..+.|+|.||-.|.... ....+.+.+.+.. .+..+ +++++|...+... ...+..+.-..+. ....|.+-|+|
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~n 153 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHA-LLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFT 153 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSE-EEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEE
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcE-EEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEe
Confidence 346889999997543321 1112122333322 22222 3344555444332 2222222211111 23358999999
Q ss_pred cccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccC-----hhhHHHHHHHHHHhh
Q 024360 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCI 248 (268)
Q Consensus 174 k~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~-----~~~~~~l~~~id~~~ 248 (268)
|+|++... .+++++... ...+.++++.++. ++.+++... .+.+.+++..|.+..
T Consensus 154 K~D~~~~~-~~~~~i~~~-------------------~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 154 RKDDLGDT-NLHDYLREA-------------------PEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CGGGC--------------------------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCcc-cHHHHHHhc-------------------hHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 99998765 455444311 0122333444443 466776653 368999999998876
Q ss_pred hc
Q 024360 249 QW 250 (268)
Q Consensus 249 ~~ 250 (268)
..
T Consensus 213 ~~ 214 (239)
T 3lxx_A 213 RE 214 (239)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 127
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.78 E-value=5.4e-07 Score=73.81 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCc----CCHHhHHHHHHHHHHHH-HhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEee
Q 024360 98 DDDYLVFDCPGQ----IELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (268)
Q Consensus 98 ~p~~lilDEP~~----LD~~~~~~i~~~ll~~l-~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vl 172 (268)
+.++.+.|.||- .+........ .+.... ......-++++++|+..-...... .+. ...-..+.|.+-|+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~--~~~~~~~~p~i~v~ 141 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWG-RMIETYITTREELKAVVQIVDLRHAPSNDDV---QMY--EFLKYYGIPVIVIA 141 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH---HHH--HHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHH-HHHHHHHhhhhcCCEEEEEEECCCCCCHHHH---HHH--HHHHHcCCCEEEEE
Confidence 346899999993 1111122222 333333 222112234455665432222211 111 11113678999999
Q ss_pred ccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 173 sk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
||+|+.... .+.. . ...+.+.+.......++++|+.+++++.+++..|.+..
T Consensus 142 nK~Dl~~~~-~~~~--------~---------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 142 TKADKIPKG-KWDK--------H---------------AKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECGGGSCGG-GHHH--------H---------------HHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ECcccCChH-HHHH--------H---------------HHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 999997644 1111 0 01111112222336899999999999999999987764
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.78 E-value=3.9e-08 Score=92.54 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+.+++++||+||||||++..|+.++.+.+++|.+.+.|+.+. ...+. +..+-+..++.-..... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~--------~a~eq--L~~~~~~~gv~~~~~~~--~~dp 164 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP--------AAYDQ--LLQLGNQIGVQVYGEPN--NQNP 164 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH--------HHHHH--HHHHHHTTTCCEECCTT--CSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch--------hHHHH--HHHHHHhcCCceeeccc--cCCH
Confidence 468899999999999999999999999999999999886321 01111 22233334442111000 0001
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc----CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~----LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (268)
..-...+++.+... +++++|+|+|+. .|.....++. .+.+.+.. ..+++ ++|++.-.+....+.
T Consensus 165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~~p--d~vlL--VlDa~~gq~a~~~a~----- 232 (433)
T 3kl4_A 165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVLKP--DDVIL--VIDASIGQKAYDLAS----- 232 (433)
T ss_dssp HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHHCC--SEEEE--EEEGGGGGGGHHHHH-----
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhhCC--cceEE--EEeCccchHHHHHHH-----
Confidence 11111344444445 899999999996 3444443433 44444422 23333 367765444333321
Q ss_pred HHHHHh-hcCCeeEeeccccccCC
Q 024360 158 LSAMVQ-LELPHVNILSKMDLVTN 180 (268)
Q Consensus 158 ~~~~~~-~~~p~i~vlsk~dll~~ 180 (268)
.++ .-.+..-|+||.|.-.+
T Consensus 233 ---~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 233 ---RFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp ---HHHHHCSSEEEEEECGGGCSC
T ss_pred ---HHhcccCCcEEEEeccccccc
Confidence 111 11345568899997544
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=3.7e-09 Score=99.22 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHH-HHHhCCCeEEEE
Q 024360 85 LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD-HLKSRNFNVCAV 136 (268)
Q Consensus 85 ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~-~l~~~~~~ii~v 136 (268)
....++++|.. +.+++++|+|+. +.......+. ..++ .+...|.+|+.+
T Consensus 165 ~Dieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 165 LDLVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred HHHHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence 33678888886 899999999999 9888777777 5555 477777777533
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.76 E-value=5e-10 Score=100.92 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=59.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec-cCCc------C-CCCCCCcccChhhhhhHHHHHHHhCCCCCCCh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~-~d~~------~-~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~ 74 (268)
-+++|+||||||||||+++|+|++ +|+|...+ .++. . +++.+.+..+ + .+.+.++.+ + +.+-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld 197 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD 197 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence 478999999999999999999998 89997543 2221 1 1333221111 1 244555553 2 11100
Q ss_pred hhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHH
Q 024360 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (268)
Q Consensus 75 ~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~ 119 (268)
......++. .. ||+++. +|++|| |+ ||+.+...+.
T Consensus 198 --g~~LSgGqk-QR-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 --GYPVSIDRK-HK-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp --TCCEECCCS-SC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred --ccCcCHHHH-HH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 001111111 23 899999 999999 88 9998876554
No 131
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.76 E-value=4.3e-08 Score=87.98 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCEEEEeCCCcCCHH----hHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 99 DDYLVFDCPGQIELF----THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 99 p~~lilDEP~~LD~~----~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
.++.|+|.||..++. ....+.......+..-. + +++++|+..-....... .+ ....-..+.|.+-|+||
T Consensus 59 ~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD--~-il~VvD~~~~~~~~~~~-~~---~~~l~~~~~pvilV~NK 131 (308)
T 3iev_A 59 AQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD--V-ILFMIDATEGWRPRDEE-IY---QNFIKPLNKPVIVVINK 131 (308)
T ss_dssp EEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS--E-EEEEEETTTBSCHHHHH-HH---HHHTGGGCCCEEEEEEC
T ss_pred CeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC--E-EEEEEeCCCCCCchhHH-HH---HHHHHhcCCCEEEEEEC
Confidence 468999999985543 11222212222333222 2 33445655433222211 00 11122357899999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhccccC
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 254 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~e~~ 254 (268)
+|+......+.. .. ..+.+.+. ....++|+|+.+++++.+++..|.+....+...
T Consensus 132 ~Dl~~~~~~~~~--------~~---------------~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~ 186 (308)
T 3iev_A 132 IDKIGPAKNVLP--------LI---------------DEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEGEPL 186 (308)
T ss_dssp GGGSSSGGGGHH--------HH---------------HHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred ccCCCCHHHHHH--------HH---------------HHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence 999743211111 00 11111111 236799999999999999999999988766544
Q ss_pred CC
Q 024360 255 DL 256 (268)
Q Consensus 255 ~~ 256 (268)
.+
T Consensus 187 ~~ 188 (308)
T 3iev_A 187 FP 188 (308)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.76 E-value=2e-08 Score=88.24 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCc--CCHHhHHHHHHHHHHHH-HhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhc-CCeeEeec
Q 024360 98 DDDYLVFDCPGQ--IELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILS 173 (268)
Q Consensus 98 ~p~~lilDEP~~--LD~~~~~~i~~~ll~~l-~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~-~p~i~vls 173 (268)
+.++.|.|.||+ +........+ .+.+ ...+..+ +++++|+.... ..+.........+ .|.+-|+|
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~---~~~~~~~~~~d~-vi~v~D~~~~~-------~~~~~~~~~~~~~~~p~ilv~N 117 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELI---ARNFILDGNADV-IVDIVDSTCLM-------RNLFLTLELFEMEVKNIILVLN 117 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHH---HHHHHHTTCCSE-EEEEEEGGGHH-------HHHHHHHHHHHTTCCSEEEEEE
T ss_pred CceEEEEeCCCccccccCCHHHHH---HHHhhhccCCcE-EEEEecCCcch-------hhHHHHHHHHhcCCCCEEEEEE
Confidence 445889999998 4444433322 2222 2222223 44456765532 1222333344566 99999999
Q ss_pred cccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 174 k~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
|+|+..+.. ... +...+. +.+ + +.++|+|+.+++++.+++..+.+....
T Consensus 118 K~Dl~~~~~-~~~----~~~~l~-------------------~~l---g-~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 118 KFDLLKKKG-AKI----DIKKMR-------------------KEL---G-VPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CHHHHHHHT-CCC----CHHHHH-------------------HHH---S-SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred ChhcCcccc-cHH----HHHHHH-------------------HHc---C-CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 999975431 110 111111 111 1 457788888888888888888776543
No 133
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.73 E-value=5.8e-09 Score=87.05 Aligned_cols=124 Identities=12% Similarity=0.012 Sum_probs=63.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC-----CCCCceEEEecc----------CC-cCCC--------------CC-CC---
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNL----------DP-AAEN--------------FD-YP--- 48 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l-----~~~~G~v~i~~~----------d~-~~~~--------------~~-y~--- 48 (268)
+.++|+|+||||||||++.++|.. .|+.|.+.+.+. |. .... +. |.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKR 106 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999988 777776644221 10 0000 00 00
Q ss_pred c---------ccC--hhh-hhhHHHHHHHhCCCCCCChhhhHhhhhhh--HH-HHHHHHHhcCCCCCEEEEeCCCc-CCH
Q 024360 49 V---------AMD--IRE-LISLEDVMEELGLGPNGGLIYCMEHLEDN--LD-DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (268)
Q Consensus 49 ~---------~~~--i~~-~i~~~~~m~~~~L~~~g~~~~~~~~~~~~--ls-~~la~al~~~~~p~~lilDEP~~-LD~ 112 (268)
. +.+ ... ...+.++++..++.... .....+..... .. ...+++++. +|..++.|||++ +|.
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV-LLTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLKK 183 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEE-EEECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTTT
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEE-EEecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecCC
Confidence 0 000 000 01133344444543210 00012333221 11 456777777 788889999999 999
Q ss_pred HhHHHHHHHHHHHHHhCC
Q 024360 113 FTHVPVLRNFVDHLKSRN 130 (268)
Q Consensus 113 ~~~~~i~~~ll~~l~~~~ 130 (268)
.....++ +.+.++.+++
T Consensus 184 ~~~~~l~-~~l~~~~~~~ 200 (210)
T 1pui_A 184 QGVDKLR-QKLDTWFSEM 200 (210)
T ss_dssp BSHHHHH-HHHHHHHC--
T ss_pred CCHHHHH-HHHHHHHhhc
Confidence 9998888 6666655444
No 134
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.68 E-value=2.4e-07 Score=73.21 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCcCCHHh-HHHHHHHHHHHHHhCCCeEEEEEeccccc-ccCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 98 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~-~~~i~~~ll~~l~~~~~~ii~v~l~d~~~-~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
+.++.|.|.||+-+... ..... .......+....+ ++++|... .......+..++ -..+.|.+-|.||+
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~~~~------~~~~~p~ilv~nK~ 118 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQ-EKVDRALEDAEVV--LFAVDGRAELTQADYEVAEYL------RRKGKPVILVATKV 118 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHH-HHHHHHTTTCSEE--EEEEESSSCCCHHHHHHHHHH------HHHTCCEEEEEECC
T ss_pred CceEEEEECCCCCCccchHHHHH-HHHHHHHHhCCEE--EEEEECCCcccHhHHHHHHHH------HhcCCCEEEEEECc
Confidence 34688999999843211 11111 2222222222223 33455443 232222222221 12578999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
|+........+ + . .++...|+++|+.+++++.+++..+-+.
T Consensus 119 Dl~~~~~~~~~--------------------~----------~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 119 DDPKHELYLGP--------------------L----------Y-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp CSGGGGGGCGG--------------------G----------G-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccchHhHHH--------------------H----------H-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 99654210000 0 1 2333468999999999999999988764
No 135
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.68 E-value=2.1e-07 Score=85.15 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=98.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChh-----h
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLI-----Y 76 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~-----~ 76 (268)
.+.++|+|++|+||||+++.+++.+...+.+|.+...||......-.. ..+. .-+...+..++.... .
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~---l~d~----~~~~~~~~~~~~~i~~~~~~~ 151 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSI---LGDK----TRMARLAVHPNAYIRPSPTSG 151 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------CHHHHTCTTEEEECCC--C
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchh---ccch----hhHHhhccCCCeeEEECCCCc
Confidence 368999999999999999999988766677899988887543211100 0000 011111111110000 0
Q ss_pred hHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHH
Q 024360 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (268)
Q Consensus 77 ~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (268)
............+...-.. +.+++|+|.||--.... .+ .+. .-+ +++++|+....+...+.
T Consensus 152 ~~~~~~~~t~d~i~~~~~~--~~~~iiiDTpGi~~~~~------~~----~~~-aD~-vl~V~d~~~~~~~~~l~----- 212 (355)
T 3p32_A 152 TLGGVTRATRETVVLLEAA--GFDVILIETVGVGQSEV------AV----ANM-VDT-FVLLTLARTGDQLQGIK----- 212 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHT--TCCEEEEEECSCSSHHH------HH----HTT-CSE-EEEEEESSTTCTTTTCC-----
T ss_pred cccchhHHHHHHHHHHhhC--CCCEEEEeCCCCCcHHH------HH----HHh-CCE-EEEEECCCCCccHHHHH-----
Confidence 0111111122333222223 78999999999522111 11 121 222 23345543322211111
Q ss_pred HHHHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhh--hcC-CeeeEEeeccC
Q 024360 157 SLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYS-MVSFMPLDLRK 233 (268)
Q Consensus 157 ~~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~--~~~-~~~~~~l~~~~ 233 (268)
.. ..+.|.+-|+||+|+.... .... .. ..+...+ ..+. +.+ -..++++|+.+
T Consensus 213 --~~--~~~~p~ivVlNK~Dl~~~~-~~~~--------~~-----------~~l~~~l-~~~~~~~~~~~~~vi~iSA~~ 267 (355)
T 3p32_A 213 --KG--VLELADIVVVNKADGEHHK-EARL--------AA-----------RELSAAI-RLIYPREALWRPPVLTMSAVE 267 (355)
T ss_dssp --TT--SGGGCSEEEEECCCGGGHH-HHHH--------HH-----------HHHHHHH-HHHSTTCCSCCCCEEEEBGGG
T ss_pred --Hh--HhhcCCEEEEECCCCcChh-HHHH--------HH-----------HHHHHHH-hhccccccCCCCceEEEEcCC
Confidence 01 1356999999999996433 1110 00 1111111 1111 112 25689999999
Q ss_pred hhhHHHHHHHHHHhhhc
Q 024360 234 ESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 234 ~~~~~~l~~~id~~~~~ 250 (268)
++++.+++..|.+....
T Consensus 268 g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 268 GRGLAELWDTVERHRQV 284 (355)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 136
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.68 E-value=2.1e-07 Score=83.29 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=36.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
+.+++++|++|+||||++..+++.+.+.+++|.+.+.|+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 35788999999999999999999999889999999998743
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.68 E-value=2.8e-08 Score=87.75 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
++-++|+|++|||||||++.++|-. ..+.+ .| ..++ +..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~------~~v~~-~~---------g~t~-------------------------~~~ 41 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR------QRVGN-WA---------GVTV-------------------------ERK 41 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC------EEEEE-CT---------TSSS-------------------------EEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC------cccCC-CC---------CeeE-------------------------EEE
Confidence 5789999999999999999998852 11111 11 1111 000
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhH---HHHHHHHHHHHH-hCCCeEEEEEecccccccCHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTH---VPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~---~~i~~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (268)
...+ ...+.++.|+|.||+-+.... ...-..+.+.+. ..+.. ++++++|+.... . .+..
T Consensus 42 ~~~~---------~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d-~ii~VvD~~~~~---~----~~~~ 104 (274)
T 3i8s_A 42 EGQF---------STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD-LLINVVDASNLE---R----NLYL 104 (274)
T ss_dssp EEEE---------ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS-EEEEEEEGGGHH---H----HHHH
T ss_pred EEEE---------EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC-EEEEEecCCChH---H----HHHH
Confidence 0001 011457889999998332210 011111222221 22222 345567766532 1 1222
Q ss_pred HHHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhH
Q 024360 158 LSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSI 237 (268)
Q Consensus 158 ~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~ 237 (268)
.......+.|.+-|+||+|+.... .+.. +.. ++ ++. ++ +.++++|+.+++++
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~-~~~~----~~~---------------~l----~~~---lg-~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQ-NIRI----EID---------------AL----SAR---LG-CPVIPLVSTRGRGI 156 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHT-TEEE----CHH---------------HH----HHH---HT-SCEEECCCGGGHHH
T ss_pred HHHHHhcCCCEEEEEECccchhhh-hHHH----HHH---------------HH----HHh---cC-CCEEEEEcCCCCCH
Confidence 233345689999999999997543 1211 111 11 111 12 46899999999999
Q ss_pred HHHHHHHHHhhh
Q 024360 238 RYVLSQIDNCIQ 249 (268)
Q Consensus 238 ~~l~~~id~~~~ 249 (268)
.+++..|.+...
T Consensus 157 ~el~~~i~~~~~ 168 (274)
T 3i8s_A 157 EALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 138
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.66 E-value=3.2e-09 Score=92.01 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++||+|||||||||++++|+|++
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999976
No 139
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.66 E-value=5.2e-09 Score=99.68 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=35.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+++|+||||||||||+++|+|+++|++|+|.+.|.+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 68999999999999999999999999999999998763
No 140
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.65 E-value=8.4e-08 Score=78.29 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=62.5
Q ss_pred CCCEEEEeCCCcCCHH--h-HHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQIELF--T-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~--~-~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
+.++.+.|.||+-+.. . .+.+.+..++. . +.. ++++++|......... ........+.|.+-|.||
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~--~-~~~-~~i~v~d~~~~~~~~~-------~~~~~~~~~~piilv~nK 121 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIIN--E-KPD-LVVNIVDATALERNLY-------LTLQLMEMGANLLLALNK 121 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHH--H-CCS-EEEEEEEGGGHHHHHH-------HHHHHHTTTCCEEEEEEC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhc--c-CCC-EEEEEecchhHHHHHH-------HHHHHHhcCCCEEEEEEh
Confidence 3457899999984332 1 11222122211 1 222 2344566544322111 112223367899999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
+|+.... .+. ..... + ++ .++ ..++++|+.+.+++.+++..+-+.....
T Consensus 122 ~Dl~~~~-~~~----~~~~~---------------~----~~---~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 122 MDLAKSL-GIE----IDVDK---------------L----EK---ILG-VKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHT-TCC----CCHHH---------------H----HH---HHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred hhccccc-cch----HHHHH---------------H----HH---HhC-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 9996543 111 01111 1 11 112 3689999999999999999998776554
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.65 E-value=7e-08 Score=82.33 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCc-C--CHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 98 ~p~~lilDEP~~-L--D~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+|+++++|+|+. . |....+..+..+.+.+++.|.+++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~ 169 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFV 169 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999999 5 55455666656666666668887766
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=6e-08 Score=80.30 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=30.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-----------CCceEEEecc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL 38 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-----------~~G~v~i~~~ 38 (268)
+.++|+|+||||||||++.++|...+ ..|.|.+.|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 67899999999999999999998765 4677777764
No 143
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.61 E-value=8.4e-07 Score=70.12 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=38.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... ... ... ..+ ++ ..++ ..++++|+.+++++.+++..
T Consensus 107 ~~~piilv~nK~Dl~~~~-~~~------~~~------------~~~----~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 107 EKVPVILVGNKVDLESER-EVS------SSE------------GRA----LA---EEWG-CPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp SCCCEEEEEECGGGGGGC-CSC------HHH------------HHH----HH---HHHT-SCEEEECTTCHHHHHHHHHH
T ss_pred CCCCEEEEEECCcccccc-cCC------HHH------------HHH----HH---HHhC-CCEEEecCCCCcCHHHHHHH
Confidence 478999999999996533 110 000 011 11 1122 36899999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 160 l~~~~ 164 (167)
T 1kao_A 160 IVRQM 164 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 144
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.61 E-value=9.6e-07 Score=70.01 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=39.6
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. ..+. . . . +...++-..++++|+.+++++.+++..
T Consensus 107 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDER-VV------GKEQ----G--------Q----N---LARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp SCCCEEEEEECTTCGGGC-CS------CHHH----H--------H----H---HHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECccccccc-cC------CHHH----H--------H----H---HHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 478999999999996532 11 0000 0 1 1 122333467999999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.60 E-value=7.2e-07 Score=78.75 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=62.3
Q ss_pred CCEEEEeCCCc--CCHHhHHHHHHHHHHH-HHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 99 DDYLVFDCPGQ--IELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 99 p~~lilDEP~~--LD~~~~~~i~~~ll~~-l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
.++.|.|.||+ +...+..+.+ .+. +...+..+ +++++|+.... ... .........+.|.+-|+||+
T Consensus 49 ~~l~l~DtpG~~~~~~~~~~e~v---~~~~~~~~~~d~-vi~V~D~t~~e---~~~----~~~~~l~~~~~p~ilv~NK~ 117 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYSPEAKV---ARDYLLSQRADS-ILNVVDATNLE---RNL----YLTTQLIETGIPVTIALNMI 117 (272)
T ss_dssp TTEEEEECCCCSCSSCSSHHHHH---HHHHHHTTCCSE-EEEEEEGGGHH---HHH----HHHHHHHHTCSCEEEEEECH
T ss_pred CeEEEEECCCcCccCCCChHHHH---HHHHHhcCCCCE-EEEEecCCchH---hHH----HHHHHHHhcCCCEEEEEECh
Confidence 46889999998 5443322222 122 22222222 34456665432 211 11222234689999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
|+.... .+. .+...+ . +.+ + +.++++|+.+++++.+++..|-+...
T Consensus 118 Dl~~~~-~~~----~~~~~l---------------~----~~l---g-~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 118 DVLDGQ-GKK----INVDKL---------------S----YHL---G-VPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHT-TCC----CCHHHH---------------H----HHH---T-SCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred hhCCcC-CcH----HHHHHH---------------H----HHc---C-CCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 996543 111 111111 1 111 1 46889999999999999998877543
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.59 E-value=2.1e-08 Score=90.04 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--CCCceEEE---eccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~--~~~G~v~i---~~~d 39 (268)
.++||+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 6899999999999999999999988 99999999 5544
No 147
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.59 E-value=5e-07 Score=71.26 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=38.0
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+.... . .... . .++ ...++ +.++++|+.+++++.+++..|
T Consensus 108 ~~p~iiv~nK~Dl~~~~--~------~~~~----~--------~~~-------~~~~~-~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAART--V------ESRQ----A--------QDL-------ARSYG-IPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp CCCEEEEEECTTCSCCC--S------CHHH----H--------HHH-------HHHHT-CCEEEECTTTCTTHHHHHHHH
T ss_pred CCcEEEEEEchhhhhcc--c------CHHH----H--------HHH-------HHHcC-CeEEEecCCCCCCHHHHHHHH
Confidence 78999999999997532 0 0000 0 111 11223 368999999999999999998
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
.+..
T Consensus 160 ~~~~ 163 (166)
T 2ce2_X 160 VREI 163 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 148
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.58 E-value=4.7e-07 Score=72.82 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999853
No 149
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.58 E-value=2.1e-07 Score=74.99 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=39.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+...... . .... . . .++ ....-..++++|+.+++++.+++..
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~----v--~~~~----~--------~----~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKI----V--SEKS----A--------Q----ELA---KSLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCC----S--CHHH----H--------H----HHH---HHTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECCcccccccc----C--CHHH----H--------H----HHH---HhcCCCeEEEEecCCCCCHHHHHHH
Confidence 57899999999999643210 0 0000 0 1 111 1133467999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 172 l~~~~ 176 (182)
T 1ky3_A 172 IARSA 176 (182)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 150
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.58 E-value=6e-07 Score=72.17 Aligned_cols=60 Identities=7% Similarity=0.149 Sum_probs=39.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... . ..+. . . .+ .....-..++++|+.+++++.+++..
T Consensus 115 ~~~p~i~v~nK~Dl~~~~--~------~~~~----~--------~----~~---~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 115 ESFPFVILGNKIDISERQ--V------STEE----A--------Q----AW---CRDNGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp TTSCEEEEEECTTCSSCS--S------CHHH----H--------H----HH---HHHTTCCCEEECCTTTCTTHHHHHHH
T ss_pred CCCcEEEEEECCcccccc--c------CHHH----H--------H----HH---HHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 567999999999996322 0 1000 0 1 11 11123367999999999999999999
Q ss_pred HHHhhhc
Q 024360 244 IDNCIQW 250 (268)
Q Consensus 244 id~~~~~ 250 (268)
+-+..-.
T Consensus 168 l~~~~~~ 174 (177)
T 1wms_A 168 AVRRVLA 174 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8776543
No 151
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.56 E-value=1.2e-06 Score=70.79 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=38.8
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+.... .. .... +.++...++ +.++++|+.+++++.+++..|
T Consensus 123 ~~piilv~nK~Dl~~~~-~~------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKR-QV------SVEE-------------------AKNRAEQWN-VNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp TCCEEEEEECGGGGGGC-CS------CHHH-------------------HHHHHHHTT-CEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEECccccccC-cc------CHHH-------------------HHHHHHHcC-CeEEEeCCCCCCCHHHHHHHH
Confidence 78999999999996533 11 1000 011122334 478999999999999999988
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 176 ~~~i 179 (187)
T 2a9k_A 176 MREI 179 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.56 E-value=4.3e-08 Score=80.82 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
.+++|+|||||||||++++|+|. +..|.|.+.+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 57899999999999999999998 678999988754
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.56 E-value=1.1e-06 Score=78.53 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCcC-CHHhHHHHHHHHHHHHHhC--CCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~L-D~~~~~~i~~~ll~~l~~~--~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
+..+.++|.||.- .+.. .+- ..+...... ...=++++++|+..+......+ .......+.|.+-|+||
T Consensus 55 ~~~i~~iDTpG~~~~~~~--~l~-~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i------~~~l~~~~~P~ilvlNK 125 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKR--AIN-RLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV------LNKLREGKAPVILAVNK 125 (301)
T ss_dssp TEEEEEESSSSCCHHHHH--HHH-HHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHH------HHHHHSSSSCEEEEEES
T ss_pred CeeEEEEECcCCCccchh--hHH-HHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHH------HHHHHhcCCCEEEEEEC
Confidence 3468899999984 3332 221 111111111 1122244556654433222211 11122357899999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
+|+...... +.+ .+.++-+.++...++|+|+.+.+++..++..|-+....
T Consensus 126 ~D~~~~~~~-----------~~~---------------~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 126 VDNVQEKAD-----------LLP---------------HLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTCCCHHH-----------HHH---------------HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cccCccHHH-----------HHH---------------HHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 999652100 101 11112223455578999999999999999999876543
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.56 E-value=3.7e-08 Score=81.40 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
|..+++|+|||||||||+++.|++ +.+|.+.+.+.+.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 667899999999999999999998 5678899887554
No 155
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.54 E-value=3.1e-07 Score=80.33 Aligned_cols=111 Identities=17% Similarity=0.309 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCc--CCHH----hHHHHHHHHHHHHH-hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeE
Q 024360 98 DDDYLVFDCPGQ--IELF----THVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (268)
Q Consensus 98 ~p~~lilDEP~~--LD~~----~~~~i~~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~ 170 (268)
+.++.|.|.||+ +... ...+.+ .+... ..+..+ +++++|+... ... +........++.|.+-
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~~~~~~~~d~-vi~VvDas~~---~~~----~~l~~~l~~~~~pvil 115 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQI---AAQSVIDLEYDC-IINVIDACHL---ERH----LYLTSQLFELGKPVVV 115 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHH---HHHHHHHSCCSE-EEEEEEGGGH---HHH----HHHHHHHTTSCSCEEE
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHH---HHHHHhhCCCCE-EEEEeeCCCc---hhH----HHHHHHHHHcCCCEEE
Confidence 346889999998 4443 222211 22221 122323 4445676552 222 2222334456899999
Q ss_pred eeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHh
Q 024360 171 ILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 171 vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
|+||+|+.... .... +.. ++.+. + + +.++++|+.+++++.+++..|.++
T Consensus 116 v~NK~Dl~~~~-~~~~----~~~---------------~l~~~----l---g-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 116 ALNMMDIAEHR-GISI----DTE---------------KLESL----L---G-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECHHHHHHT-TCEE----CHH---------------HHHHH----H---C-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEChhcCCcC-CcHH----HHH---------------HHHHH----c---C-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 99999997644 1211 111 11111 1 2 478999999999999999999876
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.53 E-value=2.6e-08 Score=82.52 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCce
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~ 32 (268)
-+++|+|||||||||++++|+|++++..|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 368999999999999999999998754443
No 157
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.53 E-value=1.5e-06 Score=68.73 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=38.3
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+.... .. ..+. . . +....++ ..++++|+.+++++.+++..+
T Consensus 109 ~~piilv~nK~Dl~~~~-~~------~~~~----~--------~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDKR-QV------SVEE----A--------K-------NRADQWN-VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp TSCEEEEEECGGGGGGC-CS------CHHH----H--------H-------HHHHHHT-CEEEECCTTTCTTHHHHHHHH
T ss_pred CCcEEEEEECccccccC-cc------CHHH----H--------H-------HHHHHcC-CeEEEeCCCCCCCHHHHHHHH
Confidence 78999999999996543 11 1010 0 0 1112233 478999999999999999998
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 162 ~~~i 165 (168)
T 1u8z_A 162 MREI 165 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 158
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.53 E-value=5.6e-07 Score=73.12 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=22.6
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
..|+++|+.+++++.+++..|-+.....
T Consensus 140 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 140 HALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 5689999999999999999998876543
No 159
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.53 E-value=1e-08 Score=84.71 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCC---CceEEEeccC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~---~G~v~i~~~d 39 (268)
|+.+++|+|++|||||||++.|.|++++. .|.|.++|.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 66789999999999999999999999988 7999988765
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.52 E-value=1.8e-06 Score=79.44 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=24.0
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
..++|+|+.+++++..++..|.+.....
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 3579999999999999999998876654
No 161
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.51 E-value=5.2e-07 Score=82.41 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc--CCCCCCceE
Q 024360 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM 33 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g--~l~~~~G~v 33 (268)
.++|+|++|||||||++.++| +++...|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 578999999999999999999 666666654
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.51 E-value=1.7e-06 Score=81.26 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=42.8
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|++... .. ... ++.+.+.+-+.......++++|+.++.++.+++.
T Consensus 290 ~~~~~~ilv~NK~Dl~~~~-~~------~~~---------------~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 290 RRGRASVVVFNKWDLVVHR-EK------RYD---------------EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp HTTCEEEEEEECGGGSTTG-GG------CHH---------------HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred HcCCCEEEEEECccCCCch-hh------HHH---------------HHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999997543 10 001 1111222222223346789999999999999999
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.+.++...
T Consensus 348 ~i~~~~~~ 355 (439)
T 1mky_A 348 AMNLAYAS 355 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99877543
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.51 E-value=4.5e-09 Score=90.83 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
++|+||||||||||+++|+|++.|++|.|.+.|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 578999999999999999999999999999988764
No 164
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.51 E-value=1.9e-06 Score=80.90 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+.+++++|++||||||++..|++++.+.+++|.+.+.|+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 3578899999999999999999999999999999998864
No 165
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.51 E-value=3e-07 Score=80.43 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCc--CCHHhHHH-HHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecc
Q 024360 98 DDDYLVFDCPGQ--IELFTHVP-VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 174 (268)
Q Consensus 98 ~p~~lilDEP~~--LD~~~~~~-i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk 174 (268)
+.++.|.|.||+ +......+ +.+..+ ...+.. ++++++|+..... .. .........+.|.+-|+||
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d-~ii~V~D~t~~~~---~~----~~~~~l~~~~~pvilv~NK 119 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYL---LKGDAD-LVILVADSVNPEQ---SL----YLLLEILEMEKKVILAMTA 119 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHH---HHSCCS-EEEEEEETTSCHH---HH----HHHHHHHTTTCCEEEEEEC
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHH---hhcCCC-EEEEEeCCCchhh---HH----HHHHHHHhcCCCEEEEEEC
Confidence 446899999998 54433222 121222 112222 3444567655321 11 1222334568999999999
Q ss_pred ccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 175 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 175 ~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+|+.... .+. .+...+ ++ .++ +.++++|+.+++++.+++..+.+...
T Consensus 120 ~Dl~~~~-~i~----~~~~~l-------------------~~---~lg-~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 120 IDEAKKT-GMK----IDRYEL-------------------QK---HLG-IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHT-TCC----BCHHHH-------------------HH---HHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcc-chH----HHHHHH-------------------HH---HcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 9996543 111 111111 11 112 46889999999999999988877654
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.51 E-value=2.2e-07 Score=85.05 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=53.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
-++.|.||||||||||+..++......+|.+.+.......+ + ...+.+|+....-.+.. ....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~-----~-----------~~a~~lG~~~~~l~i~~-~~~~ 124 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD-----P-----------EYAKKLGVDTDSLLVSQ-PDTG 124 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----H-----------HHHHHTTCCGGGCEEEC-CSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC-----H-----------HHHHHcCCCHHHeEEec-CCCH
Confidence 46889999999999999998876655667777766542111 0 01334444321100000 0011
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc-C
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I 110 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~-L 110 (268)
.++ ..+++++....+|+++++|+|++ +
T Consensus 125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 125 EQA-LEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChHhhc
Confidence 223 45666666422699999999999 5
No 167
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.51 E-value=1e-06 Score=70.85 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=40.5
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|+.... .+. ... . . .++ ..++ +.++++|+.+++++.+++.
T Consensus 112 ~~~~piilv~nK~Dl~~~~-~v~------~~~----~--------~----~~~---~~~~-~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 112 RDDFPVVLVGNKADLESQR-QVP------RSE----A--------S----AFG---ASHH-VAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp SSCCCEEEEEECGGGGGGC-CSC------HHH----H--------H----HHH---HHTT-CEEEECBTTTTBSHHHHHH
T ss_pred CCCCCEEEEEECccccccc-ccC------HHH----H--------H----HHH---HHcC-CeEEEecCCCCCCHHHHHH
Confidence 3578999999999996543 110 000 0 0 111 1222 4799999999999999999
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.|.+....
T Consensus 165 ~l~~~~~~ 172 (181)
T 2fn4_A 165 QLVRAVRK 172 (181)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877643
No 168
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.51 E-value=5.8e-06 Score=70.02 Aligned_cols=62 Identities=8% Similarity=0.054 Sum_probs=39.6
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcC-CeeeEEeeccChhhHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~l~~~~~~~~~~l~~~ 243 (268)
+.|.+-|+||+|+.... .+.. . . .+ .+.++...++ ...++++|+.+++++.+++..
T Consensus 142 ~~piilv~nK~Dl~~~~-~~~~------~-~------------~~---~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNMD-SLSI------D-N------------KL---LIKQILDNVKNPIKFSSFSTLTGVGVEQAKIT 198 (228)
T ss_dssp CCCEEEEEECGGGCC---CCCH------H-H------------HH---HHHHHHHHCCSCEEEEECCTTTCTTHHHHHHH
T ss_pred CCcEEEEEeCcccCCch-hhHH------H-H------------HH---HHHHHHHhcCCCceEEEEecccCCCHHHHHHH
Confidence 78999999999997643 1110 0 0 00 1111222332 268999999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 199 l~~~i~ 204 (228)
T 2qu8_A 199 ACELLK 204 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 169
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.51 E-value=1.7e-06 Score=71.28 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=39.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+ ..+. . . ++...++ +.++++|+.+++++.+++..
T Consensus 118 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~-------~~~~~~~-~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKR-QV------SVEE----A--------K-------NRAEQWN-VNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp SCCCEEEEEECTTCGGGC-CS------CHHH----H--------H-------HHHHHHT-CEEEEECTTTCTTHHHHHHH
T ss_pred CCCCEEEEEeccCccccc-cc------cHHH----H--------H-------HHHHHhC-CeEEEEeCCCCCCHHHHHHH
Confidence 378999999999996543 11 1010 0 1 1112233 47899999999999999998
Q ss_pred HHHhhhc
Q 024360 244 IDNCIQW 250 (268)
Q Consensus 244 id~~~~~ 250 (268)
|-+....
T Consensus 171 l~~~i~~ 177 (206)
T 2bov_A 171 LMREIRA 177 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 170
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.49 E-value=2.2e-07 Score=73.93 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=38.6
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. ..+. . . .+ ...++ +.++++|+.+++++.+++..
T Consensus 108 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 108 GDIPTALVQNKIDLLDDS-CI------KNEE----A--------E----GL---AKRLK-LRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp CSCCEEEEEECGGGGGGC-SS------CHHH----H--------H----HH---HHHHT-CEEEECBTTTTBSSHHHHHH
T ss_pred CCCCEEEEEECcccCccc-cc------CHHH----H--------H----HH---HHHcC-CeEEEEecCCCCCHHHHHHH
Confidence 578999999999997533 11 0000 0 1 11 11223 47899999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 161 l~~~~ 165 (168)
T 1z2a_A 161 LAEKH 165 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=1.3e-07 Score=85.64 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+.+++|+|||||||||++..|++++.+.+|+|.+.+.|+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3578999999999999999999999999999999998863
No 172
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.48 E-value=6.6e-08 Score=87.59 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC--CCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~--~~~G~v~i~~~d~ 40 (268)
++++||+|||||||||++++|++++. +.+|.|.+.+.|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 58999999999999999999999987 5688888877764
No 173
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.48 E-value=3.4e-08 Score=83.28 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC---CCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~---~~G~v~i~~~d~ 40 (268)
.+++|+||||||||||+++|+|++++ ..|.|.++|...
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 68999999999999999999999985 456677666543
No 174
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.48 E-value=4.3e-06 Score=67.82 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.2
Q ss_pred eeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 225 SFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 225 ~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
.++++|+.+++++.+++..+-+....
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcch
Confidence 47899999999999999998876543
No 175
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=7.1e-08 Score=86.32 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE---eccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i---~~~d~ 40 (268)
.+++|+||||||||||+++|+|+.+|++|+|.+ .|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 468999999999999999999999999999998 77654
No 176
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.46 E-value=1.4e-06 Score=71.02 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999985
No 177
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.46 E-value=7.7e-08 Score=90.18 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=34.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
-+++|+||||||||||+++++|++++.+|+|.+.+.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 36899999999999999999999999999999988654
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.45 E-value=7.9e-08 Score=90.05 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=71.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC-----------CCCCceEEEec-cCC-cCCCCCCCc----ccChh-hhhh----HHH
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDP-AAENFDYPV----AMDIR-ELIS----LED 61 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l-----------~~~~G~v~i~~-~d~-~~~~~~y~~----~~~i~-~~i~----~~~ 61 (268)
.++|+|+||||||||+++|++.. .|..|.|.+.+ ... ..+...+.. ...+. .+.. ++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 47999999999999999999983 34444444332 100 001111100 00000 1100 011
Q ss_pred HHHHhCCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 024360 62 VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (268)
Q Consensus 62 ~m~~~~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d 140 (268)
++..+++. ......+.....++ ..+++++.. .|.++++ + +|+... ..+..+.+.+++.+.+++. ++
T Consensus 239 lL~vvDls--~~~~~~ls~g~~el-~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~---iS 305 (416)
T 1udx_A 239 LLYVLDAA--DEPLKTLETLRKEV-GAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLP---VS 305 (416)
T ss_dssp EEEEEETT--SCHHHHHHHHHHHH-HHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEE---CC
T ss_pred hhEEeCCc--cCCHHHHHHHHHHH-HHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEE---EE
Confidence 11112222 11111112222223 667788888 9999999 7 999876 5553555556555666643 45
Q ss_pred cccccCHHHHHHHHH
Q 024360 141 SQFITDVTKFISGCM 155 (268)
Q Consensus 141 ~~~~~d~~~~~s~~l 155 (268)
++.-.....++..+.
T Consensus 306 A~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 306 ALTGAGLPALKEALH 320 (416)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred CCCccCHHHHHHHHH
Confidence 555555666665443
No 179
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=2.5e-06 Score=80.33 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
+.+++++|++||||||++..|+.++...+.+|.+...|+.+.. ..+. +..+-+..++.-..... -...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a--------a~eq--L~~~~~~~gvpv~~~~~--~~dp 167 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG--------AYHQ--LRQLLDRYHIEVFGNPQ--EKDA 167 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH--------HHHH--HHHHHGGGTCEEECCTT--CCCH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh--------HHHH--HHHHHHhcCCcEEecCC--CCCH
Confidence 4789999999999999999999998887778998887763311 1111 12222333432110000 0011
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc--CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHH
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~--LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (268)
..-.+.++..+-.. +.+++|+|+|+- .|.....++. .+.+.. +- ..++ +++|+..-.+....+
T Consensus 168 ~~i~~~al~~a~~~--~~DvVIIDTaGrl~~d~~lm~el~-~i~~~~-~p-d~vl--LVvDA~~gq~a~~~a-------- 232 (443)
T 3dm5_A 168 IKLAKEGVDYFKSK--GVDIIIVDTAGRHKEDKALIEEMK-QISNVI-HP-HEVI--LVIDGTIGQQAYNQA-------- 232 (443)
T ss_dssp HHHHHHHHHHHHHT--TCSEEEEECCCCSSCCHHHHHHHH-HHHHHH-CC-SEEE--EEEEGGGGGGHHHHH--------
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCcccchHHHHHHHH-HHHHhh-cC-ceEE--EEEeCCCchhHHHHH--------
Confidence 11112344444445 699999999997 4444433332 333332 21 2233 336665433222211
Q ss_pred HHHhhcC-CeeEeeccccccCCc
Q 024360 160 AMVQLEL-PHVNILSKMDLVTNK 181 (268)
Q Consensus 160 ~~~~~~~-p~i~vlsk~dll~~~ 181 (268)
..+.-.. +..-|+||.|.-.+.
T Consensus 233 ~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 233 LAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHHHHSCTTEEEEEECCSSCSSH
T ss_pred HHHHhhCCCeEEEEECCCCcccc
Confidence 2222222 334588999987543
No 180
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.44 E-value=7.1e-06 Score=66.73 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=40.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... ..+ .+.++...++...++++|+.+++++.+++..
T Consensus 134 ~~~piilv~NK~Dl~~~~---------~~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDAL---------PVE-------------------MVRAVVDPEGKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp TSSCEEEEEECTTSTTCC---------CHH-------------------HHHHHHCTTCCSCEEECBGGGTBTHHHHHHH
T ss_pred CCCCEEEEEEchhccccc---------CHH-------------------HHHHHHHhcCCceEEEEecCCCcCHHHHHHH
Confidence 578999999999995431 111 1112233455558999999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 186 l~~~i~ 191 (198)
T 3t1o_A 186 VSRLVL 191 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 181
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.44 E-value=7.9e-07 Score=72.61 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=39.0
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+..+. . ..+. . .+ +...++ +.++++|+.+++++.+++..
T Consensus 125 ~~~p~ilv~nK~Dl~~~~--~------~~~~----~--------~~-------~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRT--V------DTKQ----A--------HE-------LAKSYG-IPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp SCCCEEEEEECTTCSCCC--S------CHHH----H--------HH-------HHHHHT-CCEEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEEECCcCCccc--C------CHHH----H--------HH-------HHHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 368999999999997532 0 1010 0 11 112233 36899999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 177 l~~~~~ 182 (190)
T 3con_A 177 LVREIR 182 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 182
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=9.3e-06 Score=64.40 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|+||+|+.... .+. ... . . .++ ..++ +.++++|+.+++++.+++..
T Consensus 108 ~~~pii~v~nK~Dl~~~~-~v~------~~~----~--------~----~~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSR-EVQ------SSE----A--------E----ALA---RTWK-CAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp -CCCEEEEEECGGGGGGC-CSC------HHH----H--------H----HHH---HHHT-CEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEEcccccccc-ccC------HHH----H--------H----HHH---HHhC-CeEEEecCCCCcCHHHHHHH
Confidence 368999999999996543 111 000 0 0 111 1222 47899999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 87754
No 183
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.44 E-value=2e-06 Score=68.23 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=38.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... ....... .. .. .++ ..++ +.++++|+.+++++.+++..
T Consensus 107 ~~~piilv~nK~Dl~~~~-~~~~v~~---~~------------~~----~~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 107 KDIIIALVGNKIDXLQEG-GERKVAR---EE------------GE----KLA---EEKG-LLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp TTCEEEEEEECGGGGGSS-CCCCSCH---HH------------HH----HHH---HHHT-CEEEECCTTTCTTHHHHHHH
T ss_pred CCCcEEEEEECCCccccc-cccCCCH---HH------------HH----HHH---HHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 477888899999997653 1111110 00 01 111 1222 47899999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 87643
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.41 E-value=8.1e-08 Score=80.59 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
..++|+||||||||||+++|+|+++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999875
No 185
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.41 E-value=2.7e-06 Score=70.06 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... ..+.+.+.+.......-+ . +....-..++++|+.+++++.+++..
T Consensus 123 ~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~Sa~~g~gi~~l~~~ 185 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAV---------SEAELRSALGLLNTTGSQ-----R---IEGQRPVEVFMCSVVMRNGYLEAFQW 185 (190)
T ss_dssp TTCCEEEEEECTTSTTCC---------CHHHHHHHTTCSSCCC-----------CCSSCCEEEEECBTTTTBSHHHHHHH
T ss_pred cCCCEEEEEECCCCcCCC---------CHHHHHHHhCCccccccc-----c---ccccceEEEEEeECCcCCCHHHHHHH
Confidence 578999999999996522 111121112110000000 0 12233478999999999999999998
Q ss_pred HHH
Q 024360 244 IDN 246 (268)
Q Consensus 244 id~ 246 (268)
|-+
T Consensus 186 l~~ 188 (190)
T 1m2o_B 186 LSQ 188 (190)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 186
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.41 E-value=8.1e-08 Score=80.56 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
+.+++|+|||||||||+++.|++.+++.+|.|.+.+.|.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 378999999999999999999999988899999888775
No 187
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.40 E-value=1.3e-07 Score=96.22 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=72.2
Q ss_pred HHHcCCCCCCceEEEeccCCcC-------CCCCCCc--ccChh----------hhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 21 SLYRHCETVRRTMHIVNLDPAA-------ENFDYPV--AMDIR----------ELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 21 ~l~g~l~~~~G~v~i~~~d~~~-------~~~~y~~--~~~i~----------~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
|..+-++|..|.|.+.|.++.. +.+.+.. .++.. +.-...+.+..+||+............
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LS 466 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLS 466 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCC
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCC
Confidence 3445678899999999977521 1111100 01111 111234567778886432111111111
Q ss_pred h-hhHHHHHHHHHhcCCCCC--EEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 E-DNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~-~~ls~~la~al~~~~~p~--~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
. +.++++||++|.. +|+ ++||||||+ ||+.....++ ++++++++.|.++|+|
T Consensus 467 GGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 467 GGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 1 2234999999998 666 999999999 9999999988 9999998778888777
No 188
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.39 E-value=4e-06 Score=67.81 Aligned_cols=59 Identities=10% Similarity=0.294 Sum_probs=39.3
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeecc-ChhhHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVL 241 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~l~ 241 (268)
..+.|.+-|.||+|+.... .. ..+. . . . +...++ +.++++|+. +++++.+++
T Consensus 121 ~~~~p~ilv~nK~Dl~~~~-~v------~~~~----~--------~----~---~~~~~~-~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 121 RESFPMILVANKVDLMHLR-KV------TRDQ----G--------K----E---MATKYN-IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp SSCCCEEEEEECTTCSTTC-CS------CHHH----H--------H----H---HHHHHT-CCEEEEBCSSSCBSHHHHH
T ss_pred CCCCcEEEEEECCCchhcc-Cc------CHHH----H--------H----H---HHHHhC-CeEEEeccCCCCCCHHHHH
Confidence 3578999999999996533 11 0000 0 0 1 112333 569999999 999999999
Q ss_pred HHHHHhh
Q 024360 242 SQIDNCI 248 (268)
Q Consensus 242 ~~id~~~ 248 (268)
..|-+..
T Consensus 174 ~~l~~~i 180 (183)
T 3kkq_A 174 HDLVRVI 180 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 189
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.39 E-value=1.4e-07 Score=78.49 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=27.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
.+++|+|||||||||++++|+|+++ .+.+.+.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA----EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence 5799999999999999999999864 45555543
No 190
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.39 E-value=5.8e-07 Score=72.41 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 89 LAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 89 la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+|++++. +|+++|+||||+ ||+..+..+. ++++.+.+.|.+++++
T Consensus 74 laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 119 (148)
T 1f2t_B 74 MSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 119 (148)
T ss_dssp HHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred HHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEE
Confidence 4588888 999999999999 9999998888 8888886657777655
No 191
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.38 E-value=4.3e-07 Score=82.91 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCEEEEeCCCcCCHH-hHHHHHHHHHHHHHhCCCeEEEEEecccccc--cCHHHHHHHHHHHHHHHH--hhcCCeeEeec
Q 024360 99 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (268)
Q Consensus 99 p~~lilDEP~~LD~~-~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~i~vls 173 (268)
.++.|.|.|+..+.. ..+.+...+++.+.... +++|++|+... .++..-+..+...+...- ..+.|.+-|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d---~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR---VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC---EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhcc---EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 568999999974421 11122234555554322 34556776543 334333333322222211 24789999999
Q ss_pred cccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 174 k~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
|+|+..... ... .+++.+... ..++++|+.+.+++.+++..|.+.....
T Consensus 283 K~Dl~~~~e--------~~~-------------------~l~~~l~~~--~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 283 KMDMPEAAE--------NLE-------------------AFKEKLTDD--YPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CTTSTTHHH--------HHH-------------------HHHHHCCSC--CCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CccCCCCHH--------HHH-------------------HHHHHhhcC--CCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 999964320 000 111111111 5688999999999999999999887543
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.37 E-value=1.9e-06 Score=78.18 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCC-ceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~-G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.++|.||+|+||||+++.+++.+.+.. ..+...+-... .+..+ .+..+.+.++...... ....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~---------~~~~~--~~~~l~~~l~~~~~~~-----~~~~ 109 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY---------RNFTA--IIGEIARSLNIPFPRR-----GLSR 109 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC---------CSHHH--HHHHHHHHTTCCCCSS-----CCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC---------CCHHH--HHHHHHHHhCccCCCC-----CCCH
Confidence 688999999999999999999887652 33333321110 11112 1334555665432110 0001
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~---~~~~ii~v 136 (268)
..+...+...+.....|.++++||+..++......+. .++..+.. .+..+|++
T Consensus 110 ~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 110 DEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 1111222223322226889999999999876665555 55554443 34455444
No 193
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=1.2e-05 Score=65.47 Aligned_cols=69 Identities=6% Similarity=-0.102 Sum_probs=41.1
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... ..+.+...+... .+...+ ..++++|+.+++++.+++..
T Consensus 116 ~~~piilv~NK~Dl~~~~---------~~~~i~~~~~~~--------------~~~~~~-~~~~~~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECM---------TVAEISQFLKLT--------------SIKDHQ-WHIQACCALTGEGLCQGLEW 171 (187)
T ss_dssp TTCEEEEEEECTTSTTCC---------CHHHHHHHHTGG--------------GCCSSC-EEEEECBTTTTBTHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCC---------CHHHHHHHhChh--------------hhcCCC-cEEEEccCCCCcCHHHHHHH
Confidence 578999999999996532 111111111100 011122 57999999999999999999
Q ss_pred HHHhhhccccCCC
Q 024360 244 IDNCIQWGEDADL 256 (268)
Q Consensus 244 id~~~~~~e~~~~ 256 (268)
|-+.........+
T Consensus 172 l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 172 MMSRLKIRLEHHH 184 (187)
T ss_dssp HHHHHCC------
T ss_pred HHHHHHHHhhhhc
Confidence 9887765544433
No 194
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.35 E-value=1.7e-06 Score=68.89 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=38.8
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... .. ..+. . ..+ ...++ ..|+++|+.+++++.+++..+
T Consensus 109 ~~p~ilv~nK~Dl~~~~-~~------~~~~----~------------~~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 109 DLPVILVGNKSDLARSR-EV------SLEE----G------------RHL---AGTLS-CKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp CCCEEEEEECTTCGGGC-CS------CHHH----H------------HHH---HHHTT-CEEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEeeCcchhhcc-cC------CHHH----H------------HHH---HHHcC-CcEEEecCccCCCHHHHHHHH
Confidence 78999999999996433 11 0000 0 011 12233 478999999999999999988
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-+...
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 195
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.35 E-value=1.3e-06 Score=82.11 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=80.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++++|++|+||||++..|++.+...+.+|.+...|+.+... + +. +..+.+..++.-...... -....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-------~-~q--L~~~~~~~gv~v~~~~~~-~~dp~ 168 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-------Y-EQ--LKQLAEKIHVPIYGDETR-TKSPV 168 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-------G-GS--SHHHHHHSSCCEECCSSS-CCSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-------H-HH--HHHhhhccCcceEecCCC-CCCHH
Confidence 4789999999999999999999987777789999988743211 0 11 112334444421100000 00000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHH
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (268)
.-+..++... . +.+++|+|+|+.+... ...+.. +..+...-..-.+++++|+..-.+.... ...+
T Consensus 169 ~i~~~~l~~~--~--~~D~vIIDT~G~~~~~--~~l~~~-l~~i~~~~~~d~vllVvda~~g~~~~~~--------~~~~ 233 (432)
T 2v3c_C 169 DIVKEGMEKF--K--KADVLIIDTAGRHKEE--KGLLEE-MKQIKEITNPDEIILVIDGTIGQQAGIQ--------AKAF 233 (432)
T ss_dssp TTHHHHHHTT--S--SCSEEEEECCCSCSSH--HHHHHH-HHHTTSSSCCSEEEEEEEGGGGGGHHHH--------HHHH
T ss_pred HHHHHHHHHh--h--CCCEEEEcCCCCcccc--HHHHHH-HHHHHHHhcCcceeEEeeccccHHHHHH--------HHHH
Confidence 1111223222 4 7899999999985432 123312 2333221122223445665432222111 1223
Q ss_pred hhcC-C-eeEeeccccccCC
Q 024360 163 QLEL-P-HVNILSKMDLVTN 180 (268)
Q Consensus 163 ~~~~-p-~i~vlsk~dll~~ 180 (268)
+-.. | ..-|+||.|...+
T Consensus 234 ~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 234 KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HTTSCSCEEEEEECSSSCST
T ss_pred hhcccCCeEEEEeCCCCccc
Confidence 3345 5 6678999998654
No 196
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.35 E-value=5.7e-06 Score=76.74 Aligned_cols=113 Identities=12% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc-CHHHHHHHHHHHHHHHHhhcC-CeeEeecccc
Q 024360 99 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLEL-PHVNILSKMD 176 (268)
Q Consensus 99 p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~-d~~~~~s~~l~~~~~~~~~~~-p~i~vlsk~d 176 (268)
..+.|+|.||.-+. .+..+..+..-.. +++++|+..-. .+...- .+.. .-.++. |.+-|+||+|
T Consensus 75 ~~~~iiDtPGh~~~------~~~~~~~~~~~D~---~ilVvda~~~~~~~qt~~--~~~~---~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEVL------MATMLSGAALMDG---AILVVAANEPFPQPQTRE--HFVA---LGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGGG------HHHHHHHHTTCSE---EEEEEETTSCSSCHHHHH--HHHH---HHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHHH------HHHHHHHHhhCCE---EEEEEECCCCCCcHHHHH--HHHH---HHHcCCCCEEEEEECcc
Confidence 46899999997332 2233444433232 23345554321 222211 1111 112343 7888999999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcC--CeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.... ..... + ..+.+.+..+. -+.++++|+.+++++..++..|.+...
T Consensus 141 l~~~~-~~~~~-------------------~----~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 141 VVSKE-EALSQ-------------------Y----RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp GSCHH-HHHHH-------------------H----HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccchH-HHHHH-------------------H----HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 97543 11100 1 11222333332 368999999999999999999998653
No 197
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.35 E-value=5.5e-07 Score=74.49 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=38.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... . ..+. . .. + .....-+.++++|+.+++++.+++..
T Consensus 116 ~~~piilv~nK~Dl~~~~--~------~~~~----~--------~~----~---~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQ--V------ATKR----A--------QA----W---CYSKNNIPYFETSAKEAINVEQAFQT 168 (207)
T ss_dssp GGSCEEEEEECTTSSCCC--S------CHHH----H--------HH----H---HHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECCCCcccc--c------CHHH----H--------HH----H---HHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 478999999999996322 0 0000 0 11 1 11122367999999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 169 l~~~~~ 174 (207)
T 1vg8_A 169 IARNAL 174 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 198
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.35 E-value=5.5e-06 Score=67.03 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=39.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+..... ..+. . . .++ ..++ ..++++|+.+++++.+++..
T Consensus 108 ~~~p~i~v~nK~Dl~~~~~--------~~~~----~--------~----~~~---~~~~-~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPSRTV--------DTKQ----A--------Q----DLA---RSYG-IPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp SCCCEEEEEECTTSSSCSS--------CHHH----H--------H----HHH---HHHT-CCEEECCTTTCTTHHHHHHH
T ss_pred CCCcEEEEEECccCccccc--------CHHH----H--------H----HHH---HHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 4789999999999974320 0000 0 1 111 1222 46899999999999999998
Q ss_pred HHHhhhc
Q 024360 244 IDNCIQW 250 (268)
Q Consensus 244 id~~~~~ 250 (268)
+-+....
T Consensus 160 l~~~~~~ 166 (189)
T 4dsu_A 160 LVREIRK 166 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776644
No 199
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.34 E-value=1.2e-05 Score=71.96 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCCEEEEeCCCcCCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecccc
Q 024360 98 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 176 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~-~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~d 176 (268)
+.++.+.|.||.-++... ...+.......-+ +.-+ +++++|+..-.... ...+...-....-+.|.+-|+||+|
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~-~ad~-il~VvD~~~~~~~~---~~~i~~~l~~~~~~~p~ilV~NK~D 128 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA-DVNA-VVWVVDLRHPPTPE---DELVARALKPLVGKVPILLVGNKLD 128 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS-SCSE-EEEEEETTSCCCHH---HHHHHHHHGGGTTTSCEEEEEECGG
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHh-cCCE-EEEEEECCCCCChH---HHHHHHHHHhhcCCCCEEEEEECcc
Confidence 457899999998554221 1111122222112 2222 33345553322221 1222111111112789999999999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
+.... . . +.+.+ .. + +....++|+|+.+++++..++..|.+....
T Consensus 129 l~~~~-~---------~-~~~~~--------~~-------~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 129 AAKYP-E---------E-AMKAY--------HE-------L---LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp GCSSH-H---------H-HHHHH--------HH-------T---STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCCch-H---------H-HHHHH--------HH-------h---cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 97543 1 0 10111 00 0 234568999999999999999999886543
No 200
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.34 E-value=2.4e-07 Score=82.95 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE---eccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i---~~~d~ 40 (268)
.+++|+||||||||||+++|+ ..+|..|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 478999999999999999999 99999999998 77654
No 201
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.34 E-value=2.3e-07 Score=89.03 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=33.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
.+++|+|||||||||++++|+|+++|+.|.|.+.|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4589999999999999999999999999999998754
No 202
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.34 E-value=6.5e-06 Score=66.40 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=43.7
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+..... .... + ....... -... ...++...++...++++|+.+++++.+++..+
T Consensus 109 ~~piilv~nK~Dl~~~~~-~~~~-------~-~~~~~~~-v~~~----~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKD-TIEK-------L-KEKKLTP-ITYP----QGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp TSCEEEEEECHHHHTCHH-HHHH-------H-HHTTCCC-CCHH----HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEeEcccccccch-hhhh-------h-ccccccc-CCHH----HHHHHHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 789999999999976531 1110 0 1110000 0011 11223334565689999999999999999998
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-+..-
T Consensus 175 ~~~~~ 179 (186)
T 1mh1_A 175 IRAVL 179 (186)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 87764
No 203
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=1.1e-05 Score=65.95 Aligned_cols=59 Identities=10% Similarity=0.232 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... . .... . . .+ ...++ +.|+++|+.+++++.+++..
T Consensus 113 ~~~piilv~nK~Dl~~~~--~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQRE--V------DTRE----A--------Q----AV---AQEWK-CAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp GGSCEEEEEECTTCSSCS--S------CHHH----H--------H----HH---HHHHT-CEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEECccCCccc--c------CHHH----H--------H----HH---HHHhC-CeEEEEecCCCCCHHHHHHH
Confidence 468999999999996532 1 0000 0 0 11 11223 47899999999999999999
Q ss_pred HHHhhhc
Q 024360 244 IDNCIQW 250 (268)
Q Consensus 244 id~~~~~ 250 (268)
|-+....
T Consensus 165 l~~~~~~ 171 (199)
T 2gf0_A 165 LLTLETR 171 (199)
T ss_dssp HHHHCSS
T ss_pred HHHHHhh
Confidence 9876543
No 204
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.33 E-value=4.3e-06 Score=66.31 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=38.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .+. .+. . ..++ ..++ ..++++|+.+++++.+++..
T Consensus 105 ~~~p~ilv~nK~Dl~~~~-~~~------~~~----~------------~~~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 105 DDVPIILVGNKSDLVRSR-EVS------VDE----G------------RACA---VVFD-CKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp -CCCEEEEEECTTCCSSC-CSC------HHH----H------------HHHH---HHTT-CEEEECBGGGTBSHHHHHHH
T ss_pred CCCCEEEEEecccccccc-ccC------HHH----H------------HHHH---HHhC-CcEEEeccCCCCCHHHHHHH
Confidence 468999999999997543 111 000 0 0111 1223 57899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 158 l~~~~~ 163 (166)
T 3q72_A 158 VVRQIR 163 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 205
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.32 E-value=1.3e-06 Score=69.95 Aligned_cols=59 Identities=10% Similarity=0.220 Sum_probs=38.6
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|+.... .. .... . .. . ...++ +.++++|+.+++++.+++.
T Consensus 117 ~~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~~----~---~~~~~-~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKR-QV------STEE----G--------ER----K---AKELN-VMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp TTSSEEEEEEECGGGGGGC-CS------CHHH----H--------HH----H---HHHHT-CEEEEEBTTTTBSHHHHHH
T ss_pred CCCCcEEEEEECCcccccC-cC------CHHH----H--------HH----H---HHHcC-CeEEEEeCCCCCCHHHHHH
Confidence 3578899999999996543 11 0000 0 00 1 11122 4789999999999999999
Q ss_pred HHHHhh
Q 024360 243 QIDNCI 248 (268)
Q Consensus 243 ~id~~~ 248 (268)
.|.+..
T Consensus 170 ~l~~~~ 175 (179)
T 2y8e_A 170 RVAAAL 175 (179)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 987654
No 206
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.32 E-value=4.2e-06 Score=66.57 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=40.3
Q ss_pred HHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHH
Q 024360 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 239 (268)
Q Consensus 160 ~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 239 (268)
.....+.|.+-|+||+|+.... .. ..+. . . .+ ...++ ..++++|+.+++++.+
T Consensus 106 ~~~~~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 106 KMLGNEICLCIVGNKIDLEKER-HV------SIQE----A--------E----SY---AESVG-AKHYHTSAKQNKGIEE 158 (170)
T ss_dssp HHHGGGSEEEEEEECGGGGGGC-CS------CHHH----H--------H----HH---HHHTT-CEEEEEBTTTTBSHHH
T ss_pred HhcCCCCeEEEEEECccccccc-cc------CHHH----H--------H----HH---HHHcC-CeEEEecCCCCCCHHH
Confidence 3334578899999999996543 11 0000 0 1 11 12233 5789999999999999
Q ss_pred HHHHHHHhh
Q 024360 240 VLSQIDNCI 248 (268)
Q Consensus 240 l~~~id~~~ 248 (268)
++..|-+..
T Consensus 159 l~~~l~~~~ 167 (170)
T 1z08_A 159 LFLDLCKRM 167 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 207
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.9e-06 Score=68.59 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+-++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999853
No 208
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=9e-07 Score=71.30 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+. .+. . . .++ ..++ +.++++|+.+++++.+++..
T Consensus 115 ~~~piilv~nK~Dl~~~~-~~~------~~~----~--------~----~~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHER-VVK------RED----G--------E----KLA---KEYG-LPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp TTCEEEEEEECCSTTSCC-CSC------HHH----H--------H----HHH---HHHT-CCEEECCTTTCTTHHHHHHH
T ss_pred CCCcEEEEEECcccCccc-ccC------HHH----H--------H----HHH---HHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 578999999999997643 110 000 0 1 111 1223 46899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 168 l~~~~~ 173 (180)
T 2g6b_A 168 IAKELK 173 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 209
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=2.1e-06 Score=78.34 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=39.0
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+.... .++ .. . +.+...+ ..++++|+.+++++.+++..|
T Consensus 280 ~~piilV~NK~Dl~~~~-~~~------------~~--------~-------~~~~~~~-~~~~~iSA~~g~gi~~l~~~i 330 (357)
T 2e87_A 280 DLPFLVVINKIDVADEE-NIK------------RL--------E-------KFVKEKG-LNPIKISALKGTGIDLVKEEI 330 (357)
T ss_dssp TSCEEEEECCTTTCCHH-HHH------------HH--------H-------HHHHHTT-CCCEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECcccCChH-HHH------------HH--------H-------HHHHhcC-CCeEEEeCCCCcCHHHHHHHH
Confidence 78999999999996443 110 00 0 0111222 568999999999999999998
Q ss_pred HHhhhc
Q 024360 245 DNCIQW 250 (268)
Q Consensus 245 d~~~~~ 250 (268)
-+....
T Consensus 331 ~~~l~~ 336 (357)
T 2e87_A 331 IKTLRP 336 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 210
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.31 E-value=1.6e-07 Score=84.74 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=34.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC--------CCCCceEEEeccCCc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l--------~~~~G~v~i~~~d~~ 41 (268)
-+++|+|+||||||||++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 478999999999999999999987 789999999987653
No 211
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.31 E-value=2.1e-06 Score=74.45 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCcCCHHhH--HHHHHHHHHHHH--hCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeec
Q 024360 98 DDDYLVFDCPGQIELFTH--VPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~--~~i~~~ll~~l~--~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vls 173 (268)
+.++.|+|.||..+.... ....+.+.+.+. ..+..+ +++++|+..+......+-..+...-+.-..+.|.+-|.+
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~-il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHA-LLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSE-EEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCE-EEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 456899999998543322 122223333331 123333 344456544432222221222221111123678998899
Q ss_pred cccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccC-----hhhHHHHHHHHHHhh
Q 024360 174 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCI 248 (268)
Q Consensus 174 k~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~-----~~~~~~l~~~id~~~ 248 (268)
|.|+.... +++++. .. .. ..+.++++.++. ++.+++... .+++.+|+..|++..
T Consensus 148 K~Dl~~~~--~~~~l~--------~~---~~-------~~l~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 148 KEDLAGGS--LHDYVS--------NT---EN-------RALRELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp GGGGTTCC--HHHHHH--------HC---CC-------HHHHHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCC--HHHHHh--------hc---cc-------HHHHHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 99995432 332221 00 00 122334444442 456666544 578999999998887
Q ss_pred hc
Q 024360 249 QW 250 (268)
Q Consensus 249 ~~ 250 (268)
..
T Consensus 207 ~~ 208 (247)
T 3lxw_A 207 LE 208 (247)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 212
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.30 E-value=6.7e-06 Score=68.41 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=43.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|.||+|+..... ..+.. ....... -.+ ....++...++...|+++|+.+++++.+++..
T Consensus 133 ~~~piilv~nK~Dl~~~~~-~~~~~--------~~~~~~~-v~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKD-TIEKL--------KEKKLTP-ITY----PQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp SSCCEEEEEECHHHHTCHH-HHHHH--------HHTTCCC-CCH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEechhhccchh-hhhhh--------hcccccc-ccH----HHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence 4789999999999976541 11110 1110000 001 11223344567678999999999999999999
Q ss_pred HHHh
Q 024360 244 IDNC 247 (268)
Q Consensus 244 id~~ 247 (268)
|-+.
T Consensus 199 l~~~ 202 (204)
T 4gzl_A 199 AIRA 202 (204)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 213
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.30 E-value=2e-05 Score=62.58 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=39.6
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... . ...+...+.. ......+ +.++++|+.+++++.+++..
T Consensus 107 ~~~piilv~nK~Dl~~~~-~--------~~~~~~~~~~--------------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAM-T--------SSEMANSLGL--------------PALKDRK-WQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp TTCEEEEEEECTTSTTCC-C--------HHHHHHHHTG--------------GGCTTSC-EEEEECCTTTCTTHHHHHHH
T ss_pred CCCEEEEEEECCCCcCCC-C--------HHHHHHHhCc--------------hhccCCc-eEEEECcCCCCcCHHHHHHH
Confidence 578999999999997543 1 1111111110 0011222 47999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
+-+..
T Consensus 163 l~~~i 167 (171)
T 1upt_A 163 LVETL 167 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 214
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.29 E-value=2e-07 Score=79.59 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.5
Q ss_pred eEEEEEcCCCccHHHHHHHHH-cCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~-g~l~~ 28 (268)
.+++|+|||||||||++++|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999 99854
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.29 E-value=2.5e-07 Score=76.19 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d~ 40 (268)
.+++|+||||||||||++.|++.+++ ..|.|......|
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 57899999999999999999998764 556665544433
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.29 E-value=3.8e-07 Score=83.76 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC-CCCceEEEe-ccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~-~~~G~v~i~-~~d 39 (268)
.+++|+||||||||||+++|+|... +..|+|.+. |.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 3689999999999999999999999 999999886 543
No 217
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.29 E-value=1.3e-05 Score=65.71 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=40.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+..... ... ..+ ...++...++...|+.+|+.+++++.+++..
T Consensus 118 ~~~piilv~nK~Dl~~~~~---~~v--~~~-------------------~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANP---RVI--DDS-------------------RARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp GGSCEEEEEECTTCBTTBC---CCS--CHH-------------------HHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred CCCCEEEEEECcccccccc---ccc--CHH-------------------HHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 4689999999999964320 000 000 1111233455568999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
+-+..
T Consensus 174 l~~~i 178 (184)
T 3ihw_A 174 VAQKV 178 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.29 E-value=3e-06 Score=77.75 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=53.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
-++.|.||||||||||+..++....+.+|.|.+........ + ...+++++.+..-.+.+ ....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~-----~-----------~ra~rlgv~~~~l~i~~-~~~~ 124 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD-----P-----------VYAKNLGVDLKSLLISQ-PDHG 124 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----H-----------HHHHHHTCCGGGCEEEC-CSSH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc-----h-----------HHHHHcCCchhhhhhhh-ccCH
Confidence 46889999999999999999998887888876654322110 0 03445555432111100 1111
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCc
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~ 109 (268)
... .++++.+.....++++++|+-+.
T Consensus 125 e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 222 44455554322799999998766
No 219
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.28 E-value=4.2e-06 Score=67.02 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=38.6
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|+.... .. ..+. . . ++...++ +.++++|+.+++++.+++.
T Consensus 118 ~~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~-------~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 118 NPNTVIILIGNKADLEAQR-DV------TYEE----A--------K-------QFAEENG-LLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp CTTCEEEEEEECTTCGGGC-CS------CHHH----H--------H-------HHHHHTT-CEEEECCTTTCTTHHHHHH
T ss_pred CCCCcEEEEEECccccccc-cc------CHHH----H--------H-------HHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 3578899999999996432 11 0000 0 1 1112233 4799999999999999998
Q ss_pred HHHHhh
Q 024360 243 QIDNCI 248 (268)
Q Consensus 243 ~id~~~ 248 (268)
.+-+..
T Consensus 171 ~l~~~i 176 (179)
T 1z0f_A 171 EAAKKI 176 (179)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 220
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.28 E-value=3.4e-06 Score=68.15 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=39.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .+ ..+. . . .+ ...++ ..|+++|+.+++++.+++..
T Consensus 110 ~~~p~ilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMER-VI------SYEE----G--------K----AL---AESWN-AAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp --CCEEEEEECTTCTTTC-CS------CHHH----H--------H----HH---HHHTT-CEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEEECccchhcc-ee------cHHH----H--------H----HH---HHHhC-CcEEEEecCCCCCHHHHHHH
Confidence 478999999999995433 11 0000 0 0 11 12233 36999999999999999999
Q ss_pred HHHhhhcc
Q 024360 244 IDNCIQWG 251 (268)
Q Consensus 244 id~~~~~~ 251 (268)
+-+.....
T Consensus 163 l~~~~~~~ 170 (181)
T 3t5g_A 163 IILEAEKM 170 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 88776543
No 221
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.28 E-value=3.7e-06 Score=67.73 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=41.5
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... ..... . .... .. ... ...++...++...|+++|+.+++++.+++..+
T Consensus 112 ~~piilv~nK~Dl~~~~-~~~~~-~-------~~~~-~v--~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDK-QFFID-H-------PGAV-PI--TTV----QGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp TCCEEEEEECHHHHTCH-HHHHH-C---------CC-CC--CHH----HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEechhhhcCc-ccccc-c-------ccCC-CC--CHH----HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 78999999999997654 11000 0 0000 00 000 11122234455689999999999999999998
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 176 ~~~i 179 (182)
T 3bwd_D 176 IRVV 179 (182)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 222
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.28 E-value=1.5e-05 Score=64.95 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|.||+|+.... ... ... . ..++ ..++ +.++++|+.+++++.+++.
T Consensus 119 ~~~~p~ilv~nK~Dl~~~~-~~~------~~~----~------------~~~~---~~~~-~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 119 SENVNKLLVGNKCDLTTKK-VVD------YTT----A------------KEFA---DSLG-IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp CTTCEEEEEEECTTCTTTC-CSC------HHH----H------------HHHH---HHTT-CCEEEECTTTCTTHHHHHH
T ss_pred CCCCCEEEEEECccccccc-ccC------HHH----H------------HHHH---HHcC-CcEEEEeCCCCCCHHHHHH
Confidence 3478999999999997543 111 000 0 0111 1222 4799999999999999998
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.+-+....
T Consensus 172 ~l~~~i~~ 179 (196)
T 3tkl_A 172 TMAAEIKK 179 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 223
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.28 E-value=3.5e-07 Score=76.42 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
.+++|+|||||||||+++.|++.+ |.+.+.+.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 479999999999999999999976 7888877553
No 224
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.27 E-value=5.8e-06 Score=69.09 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+-++|+|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999853
No 225
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.27 E-value=1.1e-05 Score=76.74 Aligned_cols=114 Identities=13% Similarity=0.202 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
+-.+.|+|.||.- ...+.++..+..-+. +++++|+..-..+...-... ..-.++.|++-|+||+|+
T Consensus 72 ~~~i~iiDtPGh~------~~~~~~~~~~~~aD~---~ilVvda~~g~~~qt~e~l~-----~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGHA------DLIRAVVSAADIIDL---ALIVVDAKEGPKTQTGEHML-----ILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSHH------HHHHHHHHHTTSCCE---EEEEEETTTCSCHHHHHHHH-----HHHHTTCCBCEEEECTTS
T ss_pred CEEEEEEECCChH------HHHHHHHHHHhhCCE---EEEEEecCCCccHHHHHHHH-----HHHHcCCCEEEEEECCCc
Confidence 4468999999962 223233444432222 33345554322233322111 112368999999999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhc---CCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY---SMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~---~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
.... .++ .. ...+.+++..+ .-..++|+|+.+++++.+++..|.+...
T Consensus 138 ~~~~-~~~--------~~---------------~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 138 AGTE-EIK--------RT---------------EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SCHH-HHH--------HH---------------HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccch-hHH--------HH---------------HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 7532 111 00 11122222222 2367999999999999999999999765
No 226
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.27 E-value=1.5e-05 Score=64.74 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=41.3
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeecc-ChhhHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~l~~ 242 (268)
-+.|.+-|.||+|+..+.....++-. ...... ... ...++...++...|+++|+. +++++.+++.
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~~~v--~~~----~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSN--------HRQTPV--SYD----QGANMAKQIGAATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHT--------TTCCCC--CHH----HHHHHHHHHTCSEEEECBTTTBHHHHHHHHH
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhh--------cccCCC--CHH----HHHHHHHHcCCcEEEEeeecCCCcCHHHHHH
Confidence 47899999999999754311111000 000000 001 11223334555689999997 7999999999
Q ss_pred HHHHhh
Q 024360 243 QIDNCI 248 (268)
Q Consensus 243 ~id~~~ 248 (268)
.+-+..
T Consensus 176 ~i~~~~ 181 (184)
T 1m7b_A 176 VATLAC 181 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 227
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.3e-05 Score=65.61 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=42.7
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... ...+.+. ...... -... ...++...++...|+++|+.+++++.+++..|
T Consensus 122 ~~piilv~nK~Dl~~~~-~~~~~~~--------~~~~~~-v~~~----~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDP-KTLARLN--------DMKEKP-ICVE----QGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp TCCEEEEEECTTSTTCH-HHHHHHT--------TTTCCC-CCHH----HHHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEEChhhcccc-cchhhcc--------cccCcc-cCHH----HHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997654 1111110 000000 0011 11223334555679999999999999999998
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 188 ~~~i 191 (194)
T 2atx_A 188 IIAI 191 (194)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 228
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.26 E-value=1.1e-07 Score=84.90 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~ 29 (268)
+++++|.||+|||||||++.|.+++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4789999999999999999999998764
No 229
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.25 E-value=1.7e-05 Score=66.39 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=44.1
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|.||+|+.... .....+ ....... -.+. ...++...++...|+++|+.+++++.+++..
T Consensus 137 ~~~piilv~nK~Dl~~~~-~~~~~~--------~~~~~~~-v~~~----~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 202 (214)
T 2j1l_A 137 KKVPIIVVGCKTDLRKDK-SLVNKL--------RRNGLEP-VTYH----RGQEMARSVGAVAYLECSARLHDNVHAVFQE 202 (214)
T ss_dssp SSCCEEEEEECGGGGSCH-HHHHHH--------HHTTCCC-CCHH----HHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEEChhhhccc-hhhhhh--------cccccCc-ccHH----HHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 478999999999997654 121111 0110000 0011 1122333456668999999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 203 l~~~~~ 208 (214)
T 2j1l_A 203 AAEVAL 208 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 230
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=8e-06 Score=67.93 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=43.2
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+.... .....+ ..+....- ... ...++...++...|+++|+.+++++.+++..|
T Consensus 129 ~~piilv~nK~Dl~~~~-~~~~~~--------~~~~~~~v-~~~----~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDE-HVRTEL--------ARMKQEPV-RTD----DGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp TCCEEEEEECGGGGGCH-HHHHHH--------HHTTCCCC-CHH----HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEEchhhhccc-cchhhh--------hhcccCCC-CHH----HHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 78999999999997654 111111 11110000 001 11123334555689999999999999999998
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 195 ~~~i 198 (207)
T 2fv8_A 195 TRAA 198 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 231
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.25 E-value=9.9e-06 Score=64.04 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=21.9
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
..++++|+.+++++.+++..|-+..
T Consensus 136 ~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 136 WYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEEEcccCCCcCHHHHHHHHHHHH
Confidence 5689999999999999999987654
No 232
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=7.7e-06 Score=67.13 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|+||+|+.... .. ..+. +.++...++ ..++++|+.+++++.+++..
T Consensus 127 ~~~piiiv~NK~Dl~~~~-~v------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 127 ENIVMAIAGNKCDLSDIR-EV------PLKD-------------------AKEYAESIG-AIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp TTCEEEEEEECGGGGGGC-CS------CHHH-------------------HHHHHHTTT-CEEEECBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECccccccc-cc------CHHH-------------------HHHHHHHcC-CEEEEEeCCCCcCHHHHHHH
Confidence 368899999999996432 11 0000 011122334 57899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 180 l~~~i~ 185 (192)
T 2fg5_A 180 ISRQIP 185 (192)
T ss_dssp HHHTCC
T ss_pred HHHHHH
Confidence 987653
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=1.9e-07 Score=84.01 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE---eccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i---~~~d~ 40 (268)
.+++|+||||||||||+++|+|..++..|+|.+ .|...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 468999999999999999999999999999987 55443
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.23 E-value=3.4e-06 Score=66.94 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.9
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
..++++|+.+++++.+++..|-+..
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 5799999999999999999987654
No 235
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.23 E-value=1.2e-05 Score=64.52 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=41.3
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcC-CeeeEEeeccChhhHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVL 241 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~l~~~~~~~~~~l~ 241 (268)
..+.|.+-|+||+|+.... .+.+...+.. . . .+...++ -+.++++|+.+++++.+++
T Consensus 105 ~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~-~----~-------~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 162 (178)
T 2lkc_A 105 AANVPIIVAINKMDKPEAN----------PDRVMQELME-Y----N-------LVPEEWGGDTIFCKLSAKTKEGLDHLL 162 (178)
T ss_dssp GGSCCEEEEEETTTSSCSC----------HHHHHHHHTT-T----T-------CCBTTTTSSEEEEECCSSSSHHHHHHH
T ss_pred hCCCCEEEEEECccCCcCC----------HHHHHHHHHh-c----C-------cChhHcCCcccEEEEecCCCCCHHHHH
Confidence 4578999999999996532 0111111110 0 0 0011222 2689999999999999999
Q ss_pred HHHHHhhhc
Q 024360 242 SQIDNCIQW 250 (268)
Q Consensus 242 ~~id~~~~~ 250 (268)
..|-+....
T Consensus 163 ~~l~~~~~~ 171 (178)
T 2lkc_A 163 EMILLVSEM 171 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 998776543
No 236
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.23 E-value=2.3e-05 Score=63.78 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.2
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .. +.+...+... .+... -..++++|+.+++++.+++..
T Consensus 116 ~~~piilv~NK~Dl~~~~-~~--------~~~~~~~~~~--------------~~~~~-~~~~~~~Sa~~g~gi~~l~~~ 171 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAA-PA--------SEIAEGLNLH--------------TIRDR-VWQIQSCSALTGEGVQDGMNW 171 (181)
T ss_dssp TTCCEEEEEECTTSTTCC-CH--------HHHHHHTTGG--------------GCCSS-CEEEEECCTTTCTTHHHHHHH
T ss_pred cCCCEEEEEECcCcccCC-CH--------HHHHHHhCch--------------hccCC-ceEEEEccCCCCCCHHHHHHH
Confidence 468999999999996543 11 1111111100 01111 257899999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
+-+..
T Consensus 172 l~~~~ 176 (181)
T 1fzq_A 172 VCKNV 176 (181)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 87654
No 237
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.23 E-value=3.6e-06 Score=68.90 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=38.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. .... . . .+ ...++ +.++++|+.+++++.+++..
T Consensus 129 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAR-EV------PTEE----A--------R----MF---AENNG-LLFLETSALDSTNVELAFET 181 (193)
T ss_dssp TTCEEEEEEECGGGGGGC-CS------CHHH----H--------H----HH---HHHTT-CEEEEECTTTCTTHHHHHHH
T ss_pred CCCeEEEEEECCCccccc-cc------CHHH----H--------H----HH---HHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 477899999999996532 11 0000 0 1 11 12233 47999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 182 l~~~i 186 (193)
T 2oil_A 182 VLKEI 186 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 238
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.23 E-value=1.2e-07 Score=82.50 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=29.8
Q ss_pred eEEEEEcCCCccHHHHHHHHH---cCCCCCCceEE
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~---g~l~~~~G~v~ 34 (268)
.+++|+|||||||||++++|+ |+..++.|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 99888888887
No 239
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.23 E-value=1.1e-05 Score=70.69 Aligned_cols=61 Identities=11% Similarity=0.304 Sum_probs=29.4
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+.|+||+|++... ++..+ ...+.+.+..++ +.+++++..+.+++..+.+.|
T Consensus 144 ~~pvi~V~nK~D~~~~~-e~~~~-----------------------~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l 198 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPE-ECQQF-----------------------KKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKI 198 (274)
T ss_dssp TSCEEEEESSGGGSCHH-HHHHH-----------------------HHHHHHHHHHTT-CCCCCC-----------CHHH
T ss_pred cCCEEEEEeccCCCCHH-HHHHH-----------------------HHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHH
Confidence 79999999999997543 12111 112222233333 456677788888888888888
Q ss_pred HHhhhc
Q 024360 245 DNCIQW 250 (268)
Q Consensus 245 d~~~~~ 250 (268)
.+...+
T Consensus 199 ~~~~p~ 204 (274)
T 3t5d_A 199 KDRLPL 204 (274)
T ss_dssp HHTCSE
T ss_pred hcCCCc
Confidence 776544
No 240
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.23 E-value=5.9e-07 Score=74.62 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G 31 (268)
.+++|+|||||||||+++.|++++.|..|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 57899999999999999999999866544
No 241
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.22 E-value=4.3e-07 Score=73.50 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
|+.+++|+|||||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999764
No 242
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.22 E-value=1.4e-05 Score=66.21 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=42.9
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|+||+|+..... ....+ ..+.... -.. ....++...++...|+++|+.+++++.+++..|
T Consensus 129 ~~piilv~nK~Dl~~~~~-~~~~~--------~~~~~~~-v~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEH-TRREL--------AKMKQEP-VRS----EEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp TCCEEEEEECGGGTTCHH-HHHHH--------HTTTCCC-CCH----HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCcc-chhhh--------cccccCc-CCH----HHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHH
Confidence 789999999999986541 11100 0110000 000 111223344565689999999999999999988
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 195 ~~~~ 198 (201)
T 2gco_A 195 TRAG 198 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 243
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.21 E-value=4.5e-06 Score=68.67 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=38.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+ . .+. .. .+ ...+.-..++++|+.+++++.+++..
T Consensus 130 ~~~piilV~NK~Dl~~~~-~v----~--~~~------------~~----~~---~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 130 EDAELLLVGNKLDCETDR-EI----T--RQQ------------GE----KF---AQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp TTCEEEEEEECGGGGGGC-CS----C--HHH------------HH----HH---HHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred CCCcEEEEEECccccccc-cc----C--HHH------------HH----HH---HHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 478899999999996432 11 0 000 01 11 12233367999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 184 l~~~i 188 (192)
T 2il1_A 184 LVDDI 188 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 244
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=5.9e-07 Score=76.87 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=30.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
.+++|.|||||||||+++.|+|+ +|+|.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 57999999999999999999998 78899887653
No 245
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.21 E-value=7e-07 Score=74.57 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
|+++++|+||+||||||+++.|+++
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHC
Confidence 6789999999999999999999983
No 246
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.20 E-value=2.4e-05 Score=65.34 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=41.0
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeecc-ChhhHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~l~~ 242 (268)
-+.|.+-|.||+|+........++.. ...... ... ...++...++...|+++|+. +++++.+++.
T Consensus 131 ~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~~~v--~~~----~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 131 PNTKMLLVGCKSDLRTDVSTLVELSN--------HRQTPV--SYD----QGANMAKQIGAATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHT--------TTCCCC--CHH----HHHHHHHHHTCSEEEECCTTTCHHHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhhcc--------cccCCC--CHH----HHHHHHHHcCCCEEEEeeeccCCcCHHHHHH
Confidence 47899999999999754311111100 000000 001 11122334455679999997 7999999999
Q ss_pred HHHHhh
Q 024360 243 QIDNCI 248 (268)
Q Consensus 243 ~id~~~ 248 (268)
.+-+..
T Consensus 197 ~l~~~~ 202 (205)
T 1gwn_A 197 VATLAC 202 (205)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.20 E-value=1.8e-06 Score=81.40 Aligned_cols=132 Identities=12% Similarity=0.028 Sum_probs=70.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-eEEEeccCCcCCC---------CCCC------cccChhhhhhHHHHHHHh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYP------VAMDIRELISLEDVMEEL 66 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~v~i~~~d~~~~~---------~~y~------~~~~i~~~i~~~~~m~~~ 66 (268)
-.++|.|+||+|||||+..+++...+..| .|.+.+.....+. ..+. ..++..+.-.+.+.++.+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l 283 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSL 283 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999998766444 7888776542211 0110 012222222233444444
Q ss_pred CCCCCCChhhhHhhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHH-----hH---HHHHHHHHHHHHh-CCCeEEEE
Q 024360 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----TH---VPVLRNFVDHLKS-RNFNVCAV 136 (268)
Q Consensus 67 ~L~~~g~~~~~~~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~-----~~---~~i~~~ll~~l~~-~~~~ii~v 136 (268)
+..+.- ....-......+ ...++.+....+|+++++|+|+. .... .. ..+. +.++.+++ .+.+++++
T Consensus 284 ~~~~l~-i~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~ 360 (454)
T 2r6a_A 284 SNAGIY-IDDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIAL 360 (454)
T ss_dssp HSSCEE-EECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEE
T ss_pred hcCCEE-EECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 322210 000001122333 45556665322799999999988 4221 11 2333 44555543 47887766
Q ss_pred E
Q 024360 137 Y 137 (268)
Q Consensus 137 ~ 137 (268)
+
T Consensus 361 s 361 (454)
T 2r6a_A 361 S 361 (454)
T ss_dssp E
T ss_pred e
Confidence 4
No 248
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.20 E-value=1.4e-05 Score=63.30 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.9
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+.++++|+.+++++.+++..|-+..
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999987654
No 249
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.20 E-value=2.1e-05 Score=75.22 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.+++|+|++||||||++..|+..+...+.+|.+...|+.+.. ..+.+. ...+..++.-.+... -....
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~a--------a~~qL~--~~~~~~~i~v~~~~~--~~dp~ 169 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG--------AFDQLK--QNATKARIPFYGSYT--EMDPV 169 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSH--------HHHHHH--HHHHHHTCCEEECCC--CSCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchh--------HHHHHH--HHhhccCceEEccCC--CCCHH
Confidence 578999999999999999999776655557888887763211 112111 122333443110000 00000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCC--HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHH
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIE--LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD--~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (268)
.-.+.++..+-.. +.+++|+|+|+.+. ......+. .+.+.+ .-.. +++++|+..-.+....+ .
T Consensus 170 ~i~~~al~~~~~~--~~DvvIIDTpG~~~~~~~l~~el~-~~~~~i--~pd~--vllVvDa~~g~~~~~~a--------~ 234 (504)
T 2j37_W 170 IIASEGVEKFKNE--NFEIIIVDTSGRHKQEDSLFEEML-QVANAI--QPDN--IVYVMDASIGQACEAQA--------K 234 (504)
T ss_dssp HHHHHHHHHHHHT--TCCEEEEEECCCCTTCHHHHHHHH-HHHHHH--CCSE--EEEEEETTCCTTHHHHH--------H
T ss_pred HHHHHHHHHHHHC--CCcEEEEeCCCCcccchhHHHHHH-HHHhhh--cCce--EEEEEeccccccHHHHH--------H
Confidence 0011233333224 78999999999843 22222322 332222 1112 24456765433322222 1
Q ss_pred HHhhcCC-eeEeeccccccCCc
Q 024360 161 MVQLELP-HVNILSKMDLVTNK 181 (268)
Q Consensus 161 ~~~~~~p-~i~vlsk~dll~~~ 181 (268)
.+.-..| ..-|+||.|...+.
T Consensus 235 ~~~~~~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 235 AFKDKVDVASVIVTKLDGHAKG 256 (504)
T ss_dssp HHHHHHCCCCEEEECTTSCCCC
T ss_pred HHHhhcCceEEEEeCCccccch
Confidence 1221256 36789999997554
No 250
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.20 E-value=7.9e-06 Score=66.92 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.8
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+.++++|+.+++++.+++..|-+..
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999887764
No 251
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.20 E-value=4.1e-05 Score=62.45 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=39.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... +...+.+.+... .... .-..++++|+.+++++.+++..
T Consensus 123 ~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~--------------~~~~-~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGAL---------DEKELIEKMNLS--------------AIQD-REICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp TTCCEEEEEECTTSTTCC---------CHHHHHHHTTGG--------------GCCS-SCEEEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEECCCCccCC---------CHHHHHHHhChh--------------hhcc-CCeeEEEEECCCCCCHHHHHHH
Confidence 578999999999996543 111111111100 0111 2267899999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 179 l~~~~ 183 (188)
T 1zd9_A 179 LIQHS 183 (188)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 87764
No 252
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.19 E-value=2.7e-05 Score=63.73 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=38.1
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeec-cChhhHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL-RKESSIRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~-~~~~~~~~l~~ 242 (268)
-+.|.+-|.||+|+.... .+ ..+. . . .+ ...++ +.|+.+|+ .+++++.+++.
T Consensus 126 ~~~piilv~nK~Dl~~~~-~v------~~~~----~--------~----~~---~~~~~-~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYR-QV------TKAE----G--------V----AL---AGRFG-CLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp CCCCEEEEEECGGGGGGC-SS------CHHH----H--------H----HH---HHHHT-CEEEECCSSSCSHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcC-cc------CHHH----H--------H----HH---HHHcC-CcEEEEeecCccccHHHHHH
Confidence 478999999999995432 11 0000 0 1 11 11223 47899999 89999999999
Q ss_pred HHHHhh
Q 024360 243 QIDNCI 248 (268)
Q Consensus 243 ~id~~~ 248 (268)
.|-+..
T Consensus 179 ~l~~~i 184 (187)
T 3c5c_A 179 EAVREA 184 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 253
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.19 E-value=1.2e-05 Score=64.19 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=38.2
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... .+. .+. . . .++ ..++ ..|+++|+.+++++.+++..|
T Consensus 111 ~~piilv~NK~Dl~~~~-~v~------~~~----~--------~----~~~---~~~~-~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 111 HVPIILVGNKADLARCR-EVS------VEE----G--------R----ACA---VVFD-CKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp -CCEEEEEECTTCTTTC-CSC------HHH----H--------H----HHH---HHHT-SEEEECBTTTTBSHHHHHHHH
T ss_pred CCCEEEEEEChhhcccc-ccC------HHH----H--------H----HHH---HHcC-CeEEEEecCCCCCHHHHHHHH
Confidence 78999999999996543 110 000 0 0 111 1223 479999999999999999998
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-+...
T Consensus 164 ~~~~~ 168 (175)
T 2nzj_A 164 VRQLR 168 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 254
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.19 E-value=4e-07 Score=76.05 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceE--EEeccC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLD 39 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v--~i~~~d 39 (268)
..+++|+|||||||||+.+.|++.+. ..|.+ ++++.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~ 63 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDN 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCch
Confidence 36899999999999999999999987 67877 777654
No 255
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.18 E-value=1e-05 Score=67.03 Aligned_cols=24 Identities=4% Similarity=-0.027 Sum_probs=21.3
Q ss_pred eeeEEeeccChhhHHHHHHHHHHh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNC 247 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~ 247 (268)
..++++|+.+++++.+++..+-+.
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999988654
No 256
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.18 E-value=8.1e-06 Score=68.19 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHH
Q 024360 161 MVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYV 240 (268)
Q Consensus 161 ~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l 240 (268)
....+.|.+-|+||+|+.... .+. .. ...++...++ ..++++|+.+++++.++
T Consensus 113 ~~~~~~piilv~nK~Dl~~~~-~~~------~~-------------------~~~~~~~~~~-~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 113 VVGNEAPIVVCANKIDIKNRQ-KIS------KK-------------------LVMEVLKGKN-YEYFEISAKTAHNFGLP 165 (218)
T ss_dssp HHCSSSCEEEEEECTTCC-----CC------HH-------------------HHHHHTTTCC-CEEEEEBTTTTBTTTHH
T ss_pred hcCCCCCEEEEEECCCCcccc-ccC------HH-------------------HHHHHHHHcC-CcEEEEecCCCCCHHHH
Confidence 334468999999999996543 110 00 0001112222 57999999999999999
Q ss_pred HHHHHHhhhccccCC
Q 024360 241 LSQIDNCIQWGEDAD 255 (268)
Q Consensus 241 ~~~id~~~~~~e~~~ 255 (268)
+..|-+.........
T Consensus 166 ~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 166 FLHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhcccccc
Confidence 999998876654433
No 257
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.18 E-value=1e-05 Score=66.88 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=40.2
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .+. ... . . .+ ...++ ..|+++|+.+++++.+++..
T Consensus 128 ~~~piilv~nK~Dl~~~~-~v~------~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 128 TRVPVVLVGNKADLSPER-EVQ------AVE----G--------K----KL---AESWG-ATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp -CCCEEEEEECTTCGGGC-CSC------HHH----H--------H----HH---HHHHT-CEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEECccCcccc-ccC------HHH----H--------H----HH---HHHhC-CeEEEEeCCCCCCHHHHHHH
Confidence 368999999999996543 111 000 0 0 11 11223 37899999999999999999
Q ss_pred HHHhhhcc
Q 024360 244 IDNCIQWG 251 (268)
Q Consensus 244 id~~~~~~ 251 (268)
|-+.....
T Consensus 181 l~~~i~~~ 188 (201)
T 3oes_A 181 VIQEIARV 188 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 88876554
No 258
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.17 E-value=1e-05 Score=66.45 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=38.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChh-hHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~-~~~~l~~ 242 (268)
.+.|.+-|.||+|+.... .+ .... . . .++ ..++ +.|+++|+.+++ ++.+++.
T Consensus 131 ~~~piilv~NK~Dl~~~~-~v------~~~~----~--------~----~~~---~~~~-~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSR-QV------STEE----G--------E----KLA---TELA-CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp SCCCEEEEEECGGGGGGC-CS------CHHH----H--------H----HHH---HHHT-SEEEECCTTTCTTCHHHHHH
T ss_pred CCCcEEEEEECccccccc-cc------CHHH----H--------H----HHH---HHhC-CeEEEECCCcCCcCHHHHHH
Confidence 478999999999996532 11 0000 0 1 111 1222 478999999999 9999999
Q ss_pred HHHHhhh
Q 024360 243 QIDNCIQ 249 (268)
Q Consensus 243 ~id~~~~ 249 (268)
.|-+...
T Consensus 184 ~l~~~i~ 190 (196)
T 2atv_A 184 ELCREVR 190 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 259
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=78.50 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR 30 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~ 30 (268)
+-++|+|++|+|||||++.|.+......
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~ 65 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPE 65 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 4579999999999999999988644333
No 260
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.17 E-value=2.5e-05 Score=63.19 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. ..+. . . .+ ...++ +.++++|+.+++++.+++..
T Consensus 126 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQR-AV------KEEE----A--------R----EL---AEKYG-IPYFETSAANGTNISHAIEM 178 (195)
T ss_dssp SSCCEEEEEECTTCGGGC-CS------CHHH----H--------H----HH---HHHHT-CCEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEECccccccc-cc------CHHH----H--------H----HH---HHHcC-CCEEEEECCCCCCHHHHHHH
Confidence 578999999999996532 11 0000 0 1 11 11222 46899999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|.+...
T Consensus 179 l~~~~~ 184 (195)
T 3bc1_A 179 LLDLIM 184 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 261
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.17 E-value=2.7e-05 Score=63.58 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=40.8
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... . ...+...+. +..+.... -+.++++|+.+++++.+++..|
T Consensus 127 ~~piilv~NK~Dl~~~~-~--------~~~~~~~~~-------------~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAK-T--------AAELVEILD-------------LTTLMGDH-PFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp BCCEEEEEECTTSTTCC-C--------HHHHHHHHT-------------HHHHHTTS-CEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCC-C--------HHHHHHHhc-------------chhhccCC-eeEEEEeeCCCccCHHHHHHHH
Confidence 88999999999997653 1 111111111 00111222 2689999999999999999998
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-+...
T Consensus 184 ~~~~~ 188 (199)
T 4bas_A 184 QETAS 188 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 262
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.15 E-value=0.00017 Score=59.76 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 66899999999999999999874
No 263
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.14 E-value=3.4e-05 Score=61.94 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=22.2
Q ss_pred CeeeEEeeccChhhHHHHHHHHHHhh
Q 024360 223 MVSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 223 ~~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
-..|+++|+.+++++.+++..+-+..
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHH
Confidence 36799999999999999999886654
No 264
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.14 E-value=4.8e-06 Score=67.01 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=38.9
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|+||+|+.... .+ ..+. . . . +...++ +.++++|+.+++++.+++..
T Consensus 116 ~~~p~i~v~nK~Dl~~~~-~~------~~~~----~--------~----~---~~~~~~-~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 116 PNMVMALAGNKSDLLDAR-KV------TAED----A--------Q----T---YAQENG-LFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp TTCEEEEEEECTTCTTTC-CS------CHHH----H--------H----H---HHHHTT-CEEEECCSSSCTTHHHHHHH
T ss_pred CCCcEEEEEECCcccccc-cC------CHHH----H--------H----H---HHHHcC-CEEEEEECCCCCCHHHHHHH
Confidence 367888899999996543 11 0000 0 1 1 111233 46899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 169 l~~~~~ 174 (181)
T 2efe_B 169 IARRLP 174 (181)
T ss_dssp HHHTCC
T ss_pred HHHHHH
Confidence 877653
No 265
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.14 E-value=2.3e-05 Score=64.19 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=40.4
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|.||+|+..... .. . ..+ ...++...++...++++|+.+++++.+++..
T Consensus 126 ~~~p~ilv~nK~Dl~~~~~-~~--~--~~~-------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 126 DTAKTVLVGLKVDLRKDGS-DD--V--TKQ-------------------EGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp TTSEEEEEEECGGGCCTTT-TC--C--CHH-------------------HHHHHHHHHTCSCEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEEChhhccCCC-Cc--c--cHH-------------------HHHHHHHhcCCCEEEEeecCCCCCHHHHHHH
Confidence 4689999999999975420 00 0 000 0111222344455899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 182 l~~~i~ 187 (194)
T 3reg_A 182 SVDCIF 187 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 266
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.14 E-value=2.3e-05 Score=73.41 Aligned_cols=113 Identities=12% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCc-CCHHhHHHHHHHHHH-HHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccc
Q 024360 98 DDDYLVFDCPGQ-IELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 175 (268)
Q Consensus 98 ~p~~lilDEP~~-LD~~~~~~i~~~ll~-~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~ 175 (268)
+-++.|.|.||+ .+......-++.... .+.... . +++++|+..-..... ..+.. ..-+.+.|.+-|.||+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad-~--il~vvD~~~~~~~~d---~~~~~--~l~~~~~pvilv~NK~ 121 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEAD-V--IIFMVNGREGVTAAD---EEVAK--ILYRTKKPVVLAVNKL 121 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCS-E--EEEEEETTTCSCHHH---HHHHH--HHTTCCSCEEEEEECC
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC-E--EEEEEeCCCCCCHHH---HHHHH--HHHHcCCCEEEEEECc
Confidence 456899999998 433221111212222 232222 2 334456543222211 11111 1123678999999999
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
|+........++. ..++-.++++|+.++.++.+++..+-+...
T Consensus 122 D~~~~~~~~~~~~-------------------------------~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 122 DNTEMRANIYDFY-------------------------------SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CC-----CCCSSG-------------------------------GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred cCccchhhHHHHH-------------------------------HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 9965421111100 112335789999999999999999987764
No 267
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.14 E-value=2.4e-05 Score=63.35 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=39.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... . .+.+.+.+... .+.. .-..++++|+.+++++.+++..
T Consensus 118 ~~~piilv~nK~Dl~~~~-~--------~~~~~~~~~~~--------------~~~~-~~~~~~~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGAL-S--------CNAIQEALELD--------------SIRS-HHWRIQGCSAVTGEDLLPGIDW 173 (186)
T ss_dssp TTCEEEEEEECTTSTTCC-C--------HHHHHHHTTGG--------------GCCS-SCEEEEECCTTTCTTHHHHHHH
T ss_pred CCCcEEEEEeCccCCCCC-C--------HHHHHHHhChh--------------hccC-CceEEEEeeCCCCCCHHHHHHH
Confidence 468999999999996543 1 11111111100 0111 1257999999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 174 l~~~i~ 179 (186)
T 1ksh_A 174 LLDDIS 179 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 268
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.13 E-value=3e-06 Score=73.33 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|++|||||||++.+.|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 269
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.13 E-value=9.9e-07 Score=72.11 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCc
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G 31 (268)
+.+|+|||||||||++++|.+.+.+..|
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6899999999999999999998876554
No 270
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.13 E-value=5.7e-06 Score=69.09 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=38.8
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+ .... . . .+ ...++ +.++++|+.+++++.+++..
T Consensus 140 ~~~piilV~NK~Dl~~~~-~v------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQR-EV------NERQ----A--------R----EL---ADKYG-IPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp TCCEEEEEEECTTCGGGC-CS------CHHH----H--------H----HH---HHHTT-CCEEEEBTTTTBTHHHHHHH
T ss_pred CCCCEEEEEECCcccccc-cc------CHHH----H--------H----HH---HHHCC-CcEEEEECCCCCCHHHHHHH
Confidence 467889999999996432 11 0000 0 1 11 11223 46899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 193 l~~~i~ 198 (217)
T 2f7s_A 193 LLDLIM 198 (217)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 271
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.12 E-value=9.1e-06 Score=67.43 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=39.6
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .+ ..+. +.++...++...++++|+.+++++.+++..
T Consensus 133 ~~~piilv~NK~Dl~~~~-~v------~~~~-------------------~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSELR-EV------SLAE-------------------AQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp TTCEEEEEEECTTCGGGC-CS------CHHH-------------------HHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEECCcccccc-cc------CHHH-------------------HHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 568889899999996432 11 0000 011122345448999999999999999998
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 187 l~~~i 191 (201)
T 2hup_A 187 VATEL 191 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 272
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.12 E-value=3.4e-05 Score=61.75 Aligned_cols=25 Identities=12% Similarity=0.099 Sum_probs=22.1
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
+.++++|+.+++++.+++..|-+..
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 147 FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999987765
No 273
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.11 E-value=1.8e-05 Score=65.30 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=21.8
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
..|+++|+.+++++.+++..|-+..
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999887654
No 274
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.11 E-value=7.6e-05 Score=61.36 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999988874
No 275
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.11 E-value=1.4e-06 Score=73.29 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=27.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEe
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIV 36 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~ 36 (268)
.+++|+|||||||||+++.|++.+++ ..+.+...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~ 43 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMT 43 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecc
Confidence 57899999999999999999999876 44444333
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.10 E-value=1.5e-06 Score=70.58 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
.+++|+|||||||||+++.|++.+ |.+.+.+-+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcc
Confidence 689999999999999999999875 677776644
No 277
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.10 E-value=8.5e-06 Score=77.49 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|++|+|||||++.+.+-
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998763
No 278
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=6.6e-06 Score=77.31 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=56.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC--CceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~--~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
.+.|.||+|+|||||++++++.+... +..+.+.+ ..+. ..++.+.+.-+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~~------------ 182 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKEG------------ 182 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHTT------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHcc------------
Confidence 46899999999999999999876322 22222211 1111 11222221110
Q ss_pred hhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 82 ~~~ls~~la~al~~~~~p~~lilDEP~~-LD~-~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.. ..+...+.. ++++|++||+.. .+. .....++ .++..+.+.+..++++
T Consensus 183 --~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 183 --KL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_dssp --CH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred --cH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 01 223334444 789999999988 442 4555555 7777776666666554
No 279
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.10 E-value=1.9e-05 Score=63.59 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=39.0
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... ..+.+.+.+.... +.. .-..++++|+.+++++.+++..
T Consensus 118 ~~~piilv~nK~Dl~~~~---------~~~~i~~~~~~~~--------------~~~-~~~~~~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 118 QDAALLVFANKQDQPGAL---------SASEVSKELNLVE--------------LKD-RSWSIVASSAIKGEGITEGLDW 173 (183)
T ss_dssp SSCEEEEEEECTTSTTCC---------CHHHHHHHTTTTT--------------CCS-SCEEEEEEBGGGTBTHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCC---------CHHHHHHHhCccc--------------ccC-CceEEEEccCCCCcCHHHHHHH
Confidence 578999999999996542 1111111111000 011 1257999999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 174 l~~~~ 178 (183)
T 1moz_A 174 LIDVI 178 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 280
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.09 E-value=1.3e-05 Score=75.07 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=43.3
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|+||+|+.... ... +.++.+.+.+.+.......++++|+.+++++.+++.
T Consensus 284 ~~~~~iiiv~NK~Dl~~~~-~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 284 EAGKAVVIVVNKWDAVDKD-EST---------------------MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp HTTCEEEEEEECGGGSCCC-TTH---------------------HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHH
T ss_pred HcCCcEEEEEECccCCCcc-hHH---------------------HHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHH
Confidence 4678999999999997643 110 011111222222222346799999999999999999
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.+.++...
T Consensus 342 ~i~~~~~~ 349 (436)
T 2hjg_A 342 AIIKASEN 349 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 281
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.09 E-value=1.6e-05 Score=64.82 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.7
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.++++|+.+++++.+++..|.+...
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 57999999999999999999987654
No 282
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.08 E-value=0.0001 Score=68.29 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.|.+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 283
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.08 E-value=2.2e-05 Score=65.25 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=42.6
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.... ..... . .. .. ... ...++...++...|+++|+.+++++.+++..+
T Consensus 113 ~~piilv~nK~Dl~~~~-~~~~~-~---------~~-~v--~~~----~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDK-GYLAD-H---------TN-VI--TST----QGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp TCCEEEEEECHHHHTCH-HHHHT-C---------SS-CC--CHH----HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCc-ccccc-c---------cC-CC--CHH----HHHHHHHHcCCceEEEccCCCCCCHHHHHHHH
Confidence 78999999999997543 11000 0 00 00 000 11122334555689999999999999999988
Q ss_pred HHhhhc
Q 024360 245 DNCIQW 250 (268)
Q Consensus 245 d~~~~~ 250 (268)
-+....
T Consensus 175 ~~~~~~ 180 (212)
T 2j0v_A 175 IKVVLQ 180 (212)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 776544
No 284
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.07 E-value=8.7e-06 Score=66.96 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=29.1
Q ss_pred hcCCeeEeeccccccC-CccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccC-hhhHHHHH
Q 024360 164 LELPHVNILSKMDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-ESSIRYVL 241 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~-~~~~~~l~ 241 (268)
.+.|.+-|.||+|+.. .. .+ ..+. ..++...++ +.++++|+.+ ++++.+++
T Consensus 131 ~~~piilv~nK~Dl~~~~~-~v------~~~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRH-QV------RLDM-------------------AQDWATTNT-LDFFDVSANPPGKDADAPF 183 (208)
T ss_dssp SCCEEEEEEECC--------CC------CHHH-------------------HHHHHHHTT-CEEEECCC-------CHHH
T ss_pred cCCcEEEEEECcccchhhc-cC------CHHH-------------------HHHHHHHcC-CEEEEeccCCCCcCHHHHH
Confidence 4789999999999965 22 11 0000 011122333 5799999999 99999999
Q ss_pred HHHHHhh
Q 024360 242 SQIDNCI 248 (268)
Q Consensus 242 ~~id~~~ 248 (268)
..|-+..
T Consensus 184 ~~i~~~~ 190 (208)
T 2yc2_C 184 LSIATTF 190 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 285
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.07 E-value=5.9e-06 Score=67.48 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=38.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|+||+|+.... .. ..+. . . .+ .+.++ +.++++|+.+++++.+++..
T Consensus 126 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 126 DNAQVILVGNKCDLEDER-VV------PAED----G--------R----RL---ADDLG-FEFFEASAKENINVKQVFER 178 (189)
T ss_dssp TTCEEEEEEECTTCGGGC-CS------CHHH----H--------H----HH---HHHHT-CEEEECBTTTTBSHHHHHHH
T ss_pred CCCCEEEEEECccccccc-CC------CHHH----H--------H----HH---HHHcC-CeEEEEECCCCCCHHHHHHH
Confidence 478999999999996533 11 0000 0 1 11 11223 47999999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 179 l~~~i 183 (189)
T 2gf9_A 179 LVDVI 183 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 286
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.06 E-value=2.5e-05 Score=64.35 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=38.2
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. ..+. . . .++ ..++ +.++++|+.+++++.+++..
T Consensus 112 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~~---~~~~-~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 112 DNAQVLLVGNKCDMEDER-VV------SSER----G--------R----QLA---DHLG-FEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp SSCEEEEEEECTTCTTSC-CS------CHHH----H--------H----HHH---HHHT-CEEEECBTTTTBSSHHHHHH
T ss_pred CCCCEEEEEECcccCccc-cc------CHHH----H--------H----HHH---HHCC-CeEEEEECCCCCCHHHHHHH
Confidence 478999999999996543 11 0000 0 1 111 1223 37899999999999999888
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 165 l~~~i~ 170 (203)
T 1zbd_A 165 LVDVIC 170 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 287
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.06 E-value=1.3e-05 Score=66.05 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=42.3
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.........+. ...... -... ...++...++...|+++|+.+++++.+++..+
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~---------~~~~~~-v~~~----~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELD---------KCKEKP-VPEE----AAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHH---------TTTCCC-CCHH----HHHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhc---------cccccc-CCHH----HHHHHHHhcCCcEEEEEecCCCCCHHHHHHHH
Confidence 789999999999976431111000 000000 0001 11122234455689999999999999999988
Q ss_pred HHhhh
Q 024360 245 DNCIQ 249 (268)
Q Consensus 245 d~~~~ 249 (268)
-+...
T Consensus 190 ~~~~~ 194 (201)
T 2q3h_A 190 IVAGI 194 (201)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77653
No 288
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.05 E-value=1.6e-05 Score=65.47 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=21.9
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCI 248 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~ 248 (268)
..++++|+.+++++.+++..|-+..
T Consensus 165 ~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 165 WYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred eEEEECcCCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999887654
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.05 E-value=5.5e-07 Score=76.11 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC---CCCCceEEE
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l---~~~~G~v~i 35 (268)
+..++|+||+||||||+++.|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999865 445555543
No 290
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.05 E-value=8.7e-05 Score=65.02 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.-++|+|.+|+|||||++.+.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 291
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.04 E-value=2.9e-05 Score=64.16 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=39.1
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
...|.+-|+||+|+.... .+ ..+. . . .+ ...++ +.++++|+.+++++.+++..
T Consensus 112 ~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 112 STVLKLLVGNKCDLKDKR-VV------EYDV----A--------K----EF---ADANK-MPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp TTCEEEEEEECTTCTTTC-CS------CHHH----H--------H----HH---HHHTT-CCEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEECCCCcccc-cc------CHHH----H--------H----HH---HHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 467889999999996543 11 0000 0 1 11 12233 47899999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 165 l~~~i~ 170 (206)
T 2bcg_Y 165 MARQIK 170 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 292
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.04 E-value=1.7e-05 Score=70.89 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=56.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~~ 83 (268)
.+.|.||+|+||||+++.+++.+...+..+.+.+. .+. ..++...+.- .
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~---------------~~~--~~~~~~~~~~--------------~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA---------------DDF--AQAMVEHLKK--------------G 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH---------------HHH--HHHHHHHHHH--------------T
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH---------------HHH--HHHHHHHHHc--------------C
Confidence 46899999999999999999876544334433221 111 1111111100 0
Q ss_pred hHHHHHHHHHhcCCCCCEEEEeCCCcCCH--HhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 84 ~ls~~la~al~~~~~p~~lilDEP~~LD~--~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
.. ..+... .. ++++|++||+..+.. .....+. .++..+...+..++++
T Consensus 88 ~~-~~~~~~-~~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~ 137 (324)
T 1l8q_A 88 TI-NEFRNM-YK--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILA 137 (324)
T ss_dssp CH-HHHHHH-HH--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred cH-HHHHHH-hc--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 01 111112 23 689999999988543 5555555 7777776666665544
No 293
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.03 E-value=5.8e-06 Score=84.29 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCC--CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCe
Q 024360 62 VMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 62 ~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~--p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
.+..+||+... ++..... +++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+
T Consensus 487 ~L~~vGL~~l~-----ldR~~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~T 558 (972)
T 2r6f_A 487 FLQNVGLDYLT-----LSRSAGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHTCTTSB-----SSSBGGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE
T ss_pred HhhhCCCCccc-----cCCccccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 47778887431 1222322 33999999998 7 59999999999 9999998888 999999878889
Q ss_pred EEEE
Q 024360 133 VCAV 136 (268)
Q Consensus 133 ii~v 136 (268)
||+|
T Consensus 559 VIvV 562 (972)
T 2r6f_A 559 LIVV 562 (972)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
No 294
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.03 E-value=3e-06 Score=74.69 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=30.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
-+++|+||||||||||+++++|.+.+ +.+.+.|.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 35899999999999999999998876 6787777553
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=2.2e-06 Score=70.90 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+-++|+|+||||||||++.++|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 6789999999999999999999753
No 296
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.01 E-value=3.6e-05 Score=72.48 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=43.7
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|.||+|+..... . .. .++.+.+.+.+...+...++++|+.+++++.+++.
T Consensus 304 ~~~~~~ilv~NK~Dl~~~~~-~------~~---------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 304 EAGKAVVIVVNKWDAVDKDE-S------TM---------------KEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp HTTCEEEEEEECGGGSCCCS-S------HH---------------HHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHH
T ss_pred HcCCCEEEEEEChhcCCCch-H------HH---------------HHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHH
Confidence 36789999999999976431 0 00 11111222223333447799999999999999999
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.+.++...
T Consensus 362 ~i~~~~~~ 369 (456)
T 4dcu_A 362 AIIKASEN 369 (456)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887643
No 297
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.01 E-value=7.3e-06 Score=82.85 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=52.1
Q ss_pred HHHHhCCCCCCChhhhHhhhhhh------HHHHHHHHHhcCCCC--CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCe
Q 024360 62 VMEELGLGPNGGLIYCMEHLEDN------LDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (268)
Q Consensus 62 ~m~~~~L~~~g~~~~~~~~~~~~------ls~~la~al~~~~~p--~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ 132 (268)
.+..+||+... ++..... +++.||++|.. +| .++||||||+ ||+.....++ +++++|++.|.+
T Consensus 362 ~L~~vGL~~l~-----l~r~~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~T 433 (842)
T 2vf7_A 362 VLLHLGLGYLG-----LDRSTPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNS 433 (842)
T ss_dssp HHHHTTCTTSB-----TTCBGGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE
T ss_pred HHHhCCCCcCC-----ccCCcCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCE
Confidence 46677876431 1222222 34999999999 87 5999999999 9999999988 999999888888
Q ss_pred EEEE
Q 024360 133 VCAV 136 (268)
Q Consensus 133 ii~v 136 (268)
+|+|
T Consensus 434 VIvV 437 (842)
T 2vf7_A 434 LFVV 437 (842)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
No 298
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.01 E-value=0.00011 Score=66.80 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
-++|+|.+|||||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 299
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.01 E-value=9.6e-05 Score=65.39 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999964
No 300
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.01 E-value=1.7e-05 Score=72.97 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCe-eEeec-cc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILS-KM 175 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~-i~vls-k~ 175 (268)
+..+.|+|.||+-+.. +.++..++.-...+ + ++| ..-..+... ..+. ..-.++.|+ +-++| |+
T Consensus 59 ~~~i~iiDtPGh~~f~------~~~~~~~~~aD~ai-l--Vvd-~~g~~~qt~--e~~~---~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTL------KSLITALNISDIAV-L--CIP-PQGLDAHTG--ECII---ALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SSEEEEEECTTTTTCH------HHHHHHHHTCSEEE-E--EEC-TTCCCHHHH--HHHH---HHHHTTCCEEEEEECCGG
T ss_pred CeEEEEEECCChHHHH------HHHHHHHHHCCEEE-E--EEc-CCCCcHHHH--HHHH---HHHHcCCCeEEEEEEecc
Confidence 3458999999986532 23444454433333 2 234 221111111 1111 112457898 88899 99
Q ss_pred cccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcC--CeeeEE--eeccC---hhhHHHHHHHHHHhh
Q 024360 176 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMP--LDLRK---ESSIRYVLSQIDNCI 248 (268)
Q Consensus 176 dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~--~~~~~~--l~~~~---~~~~~~l~~~id~~~ 248 (268)
|+ ... .++. . ...+.+++..++ .+.++| +|+.+ .+++.+++..|.+..
T Consensus 124 Dl-~~~-~~~~--------~---------------~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 124 ST-HMH-AIDE--------L---------------KAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp GS-CHH-HHHH--------H---------------HHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CC-CHH-HHHH--------H---------------HHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 99 432 1110 0 012222333332 378999 99999 999999998887765
Q ss_pred h
Q 024360 249 Q 249 (268)
Q Consensus 249 ~ 249 (268)
.
T Consensus 179 ~ 179 (370)
T 2elf_A 179 E 179 (370)
T ss_dssp H
T ss_pred c
Confidence 4
No 301
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.01 E-value=9.8e-06 Score=68.16 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (268)
-.+.|.||+|+||||+++.++..+......+.+.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999999999998765443444443
No 302
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.00 E-value=5e-05 Score=62.75 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|.||+|+.... .+ ..+. . . .++ ..++ ..|+++|+.+++++.+++..
T Consensus 129 ~~~piilv~nK~Dl~~~~-~v------~~~~----~--------~----~~a---~~~~-~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARSR-EV------SLEE----G--------R----HLA---GTLS-CKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp SCCCEEEEEECTTCTTTC-CS------CHHH----H--------H----HHH---HHTT-CEEEEEBTTTTBSHHHHHHH
T ss_pred CCCCEEEEeechhccccC-Cc------CHHH----H--------H----HHH---HHhC-CEEEEEcCCCCCCHHHHHHH
Confidence 378999999999996543 11 0000 0 1 111 1233 47899999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+-+...
T Consensus 182 l~~~i~ 187 (195)
T 3cbq_A 182 AVRQIR 187 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 303
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.00 E-value=6.6e-05 Score=61.10 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+-++|+|+.|+|||||++.+.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 304
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.00 E-value=1.4e-05 Score=66.13 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=39.0
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+ .... . . .+ ...++ +.|+++|+.+++++.+++..
T Consensus 129 ~~~piilv~nK~Dl~~~~-~v------~~~~----~--------~----~~---~~~~~-~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPER-EV------TFLE----A--------S----RF---AQENE-LMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp TTCEEEEEEECGGGGGGC-CS------CHHH----H--------H----HH---HHHTT-CEEEEECTTTCTTHHHHHHH
T ss_pred CCCcEEEEEECCCccccc-cc------CHHH----H--------H----HH---HHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 478899999999996432 11 0000 0 0 11 11233 57999999999999999998
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
|-+...
T Consensus 182 l~~~i~ 187 (200)
T 2o52_A 182 CARTIL 187 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 305
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.99 E-value=1.1e-05 Score=66.91 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (268)
-.+.|.||+|+|||||+++++.......+.+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468899999999999999999877554444443
No 306
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.99 E-value=4.4e-05 Score=68.16 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 55899999999999999998774
No 307
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.98 E-value=6.7e-06 Score=84.06 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCC--CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 85 LDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 85 ls~~la~al~~~~~--p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
+++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.+||+|
T Consensus 528 QRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvV 579 (993)
T 2ygr_A 528 QRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIVV 579 (993)
T ss_dssp HHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 33999999998 7 58999999999 9999998888 9999998889998877
No 308
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.98 E-value=0.00023 Score=66.73 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
.-++++|+.++|||||++.|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 45889999999999999999653
No 309
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.98 E-value=1.4e-05 Score=65.31 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=37.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .+ . .+. . . .+ ...++ +.|+++|+.+++++.+++..
T Consensus 125 ~~~piilv~nK~Dl~~~~-~v----~--~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLESRR-DV----K--REE----G--------E----AF---AREHG-LIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp TTCEEEEEEECTTCGGGC-CS----C--HHH----H--------H----HH---HHHHT-CEEEEECTTTCTTHHHHHHH
T ss_pred CCCCEEEEEECcccCCcc-cc----C--HHH----H--------H----HH---HHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 478899999999996533 11 0 000 0 0 11 11233 47899999999999999988
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 178 l~~~i 182 (191)
T 2a5j_A 178 TAKEI 182 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86554
No 310
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.97 E-value=4.4e-06 Score=77.59 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc------------CCCCCCceEEEec
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN 37 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g------------~l~~~~G~v~i~~ 37 (268)
...++|+|+||||||||+++|+| .+.|+.|.+.+.|
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 35789999999999999999999 5678889988876
No 311
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.96 E-value=7.6e-06 Score=66.70 Aligned_cols=62 Identities=6% Similarity=-0.011 Sum_probs=39.7
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... .. ..+...+... .+...+ ..++++|+.+++++.+++..
T Consensus 122 ~~~piilv~nK~Dl~~~~-~~--------~~~~~~~~~~--------------~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 177 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAA-SE--------AEIAEQLGVS--------------SIMNRT-WTIVKSSSKTGDGLVEGMDW 177 (189)
T ss_dssp TTCEEEEEEECTTSTTCC-CH--------HHHHHHTTGG--------------GCCSSC-EEEEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCC-CH--------HHHHHHhChh--------------hccCCc-eEEEEccCCCccCHHHHHHH
Confidence 478999999999996543 11 1111111100 011122 47999999999999999999
Q ss_pred HHHhhh
Q 024360 244 IDNCIQ 249 (268)
Q Consensus 244 id~~~~ 249 (268)
+.+...
T Consensus 178 l~~~i~ 183 (189)
T 2x77_A 178 LVERLR 183 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 312
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.95 E-value=9.6e-05 Score=72.07 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.3
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.++|+|+.+++++.+++..|.....
T Consensus 192 vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 192 VSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCchhHHHHHHhhcc
Confidence 68999999999999999999987654
No 313
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=72.80 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=40.1
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+..... ....+... .+ .... .....++...++...|+++|+.+++++.+++..|
T Consensus 134 ~~piilv~NK~Dl~~~~~-~~~~~~~~--~~-~~v~----------~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKD-TIEKLKEK--KL-TPIT----------YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 789999999999976541 11111100 00 0000 0111122333444578999999999999999887
Q ss_pred HHh
Q 024360 245 DNC 247 (268)
Q Consensus 245 d~~ 247 (268)
-+.
T Consensus 200 ~~~ 202 (204)
T 3th5_A 200 IRA 202 (204)
Confidence 653
No 314
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.94 E-value=7.3e-05 Score=70.35 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g 24 (268)
...++|+|++|+|||||++.++|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999987
No 315
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.93 E-value=4.9e-05 Score=71.97 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+-++|+|++|+|||||++.+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 4589999999999999999988
No 316
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.93 E-value=1.7e-05 Score=78.42 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 210 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 210 l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+...+.+.+..-.++.+++.|+.+..++..++..|.+..-
T Consensus 234 ~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 234 LEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCC
Confidence 3344444455556688999999999999999999977653
No 317
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.92 E-value=1.1e-05 Score=77.33 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEcCCCccHHHHHHHHHc--CCCCCCceEEEeccCCcC
Q 024360 5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g--~l~~~~G~v~i~~~d~~~ 42 (268)
++|.|++||||||++++|.. +.++..+++.+...||..
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 67999999999999999876 556677889998888854
No 318
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.92 E-value=4.4e-06 Score=70.41 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
-.++|+||+|||||||++.|.+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999865
No 319
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.92 E-value=9.1e-05 Score=69.56 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA 42 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~ 42 (268)
+.+++++|++|+||||++..|+..+... +.+|.+...|+.+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4678899999999999999999888766 6689999988754
No 320
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.91 E-value=3.7e-05 Score=69.39 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=39.5
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
-+.|.+-|.||+|+.... . ...+...+.... .. ..-+.|+++|+.+++++.+++..
T Consensus 265 ~~~piilV~NK~Dl~~~~-~--------~~~i~~~~~~~~--------------~~-~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 265 RDAVLLVFANKQDLPNAM-N--------AAEITDKLGLHS--------------LR-HRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp TTCEEEEEEECTTSTTCC-C--------HHHHHHHHTCTT--------------CC-SSCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCeEEEEEECccCCccc-C--------HHHHHHHhchhh--------------hh-cCCCEEEEEECCCCcCHHHHHHH
Confidence 478999999999996543 1 111111111100 00 11267999999999999999999
Q ss_pred HHHhh
Q 024360 244 IDNCI 248 (268)
Q Consensus 244 id~~~ 248 (268)
|-+..
T Consensus 321 l~~~l 325 (329)
T 3o47_A 321 LSNQL 325 (329)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 321
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.90 E-value=0.00021 Score=66.20 Aligned_cols=113 Identities=11% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc-cCHHHHHHHHHHHHHHHHhhcC-CeeEeecccc
Q 024360 99 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLEL-PHVNILSKMD 176 (268)
Q Consensus 99 p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~-~d~~~~~s~~l~~~~~~~~~~~-p~i~vlsk~d 176 (268)
..+.|+|.||.-+ ..+.+++.+..-.. +++++|+..- ..+...-...+. -.++. |.+-|+||+|
T Consensus 83 ~~i~iiDtPGh~~------f~~~~~~~~~~~D~---~ilVvda~~g~~~~qt~e~l~~~-----~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGHEA------LMTTMLAGASLMDG---AILVIAANEPCPRPQTREHLMAL-----QIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSHHH------HHHHHHHCGGGCSE---EEEEEETTSCSSCHHHHHHHHHH-----HHHTCCCEEEEEECGG
T ss_pred cEEEEEECCChHH------HHHHHHhhhhhCCE---EEEEEECCCCCCChhHHHHHHHH-----HHcCCCcEEEEEECcc
Confidence 4689999999632 23244444433232 2233454432 133333211111 12344 6777899999
Q ss_pred ccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 177 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 177 ll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~--~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.... .... .+. .+.+++..+ .-+.++++|+.+++++..|+..|++...
T Consensus 149 l~~~~-~~~~-------------------~~~----~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 149 LVDKE-KALE-------------------NYR----QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp GSCHH-HHHH-------------------HHH----HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCHH-HHHH-------------------HHH----HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 97533 1100 011 122233332 2368999999999999999999998543
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.89 E-value=4.7e-06 Score=68.83 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
|+.+++|+|++|||||||++.+.+.+++.+.++.....++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4567899999999999999999998766555665555544
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.89 E-value=9.2e-06 Score=67.81 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
+.+++|+|++||||||+++.|++.++ .+.+...|.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 47899999999999999999999864 244444443
No 324
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.88 E-value=0.00024 Score=70.45 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
.+-++|+|+.|+|||||++.|.|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367899999999999999999985
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.88 E-value=5.4e-06 Score=68.89 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+.++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999999
No 326
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.87 E-value=8e-06 Score=66.00 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHc
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g 24 (268)
|+.+++|.|++||||||+++.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 788999999999999999999997
No 327
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.85 E-value=4.2e-06 Score=80.96 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc-eEE-Eec
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN 37 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G-~v~-i~~ 37 (268)
.+++|+|+|||||||++++|++.+.+.+| ++. ++|
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 57899999999999999999999998886 775 444
No 328
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.85 E-value=9.5e-06 Score=69.89 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~ 38 (268)
-+++|+||||||||||++++++... .|.+.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 3589999999999999999999875 566766654
No 329
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.85 E-value=4.5e-05 Score=72.39 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.|.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999875
No 330
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.85 E-value=8.1e-05 Score=69.02 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=17.3
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.++|+|+.+++++..++..|++...
T Consensus 172 ~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 172 APIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CCEEEC------CHHHHHHHHHHHSC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999999998543
No 331
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=3.7e-05 Score=67.75 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=57.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
..+.|.||+|+||||+.+++++.+....+.+...+...... ... .-+.+|..+.. .....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~------~~~---------~~~l~g~~~~~-----~~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME------KHA---------VSRLIGAPPGY-----VGYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS------TTH---------HHHHHCCCTTS-----TTTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc------ccc---------HHHhcCCCCcc-----ccccc
Confidence 36899999999999999999999887777766655432111 000 11223322110 00000
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHhHHHHHHHHHHH
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~~~~i~~~ll~~ 125 (268)
. ..+..++... ...++++||...+.+.....++ .++..
T Consensus 108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223334331 4479999999889887765555 55443
No 332
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.84 E-value=6e-05 Score=66.73 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=43.0
Q ss_pred cCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHH
Q 024360 165 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 244 (268)
Q Consensus 165 ~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~i 244 (268)
+.|.+-|.||+|+.......+. + ....... -... ...++...++...|+++|+.+++++.+++..|
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~--------~-~~~~~~~-v~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEK--------L-KEKKLTP-ITYP----QGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHH--------H-HHTTCCC-CCHH----HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCcEEEEEEchhcccccchhhh--------c-ccccccc-ccHH----HHHHHHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 7899999999999764311110 0 0100000 0011 12223345566689999999999999999988
Q ss_pred HHhh
Q 024360 245 DNCI 248 (268)
Q Consensus 245 d~~~ 248 (268)
-+..
T Consensus 325 ~~~~ 328 (332)
T 2wkq_A 325 IRAV 328 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 333
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.84 E-value=4.7e-05 Score=63.74 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=19.0
Q ss_pred eEEEEEcCCCccHHHHHHH-HHc
Q 024360 3 YAQLVIGPAGSGKSTYCSS-LYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~-l~g 24 (268)
+-++|+|++|+|||||++. +.|
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 6689999999999999998 443
No 334
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.84 E-value=4.5e-05 Score=69.83 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~ 38 (268)
.++.|.||+|||||||+..++.......+.+.+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468899999999999999888765444556666554
No 335
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.83 E-value=0.00018 Score=60.19 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=43.6
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhh-HHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLS 242 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~-~~~l~~ 242 (268)
-+.|.+-|.||+|+........ .+.+.-.... .. ....++...++...|+.+|+.++++ +.+++.
T Consensus 130 ~~~piilv~nK~Dl~~~~~~~~--------~~~~~~~~~v--~~----~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 130 PSTRVLLIGCKTDLRTDLSTLM--------ELSHQKQAPI--SY----EQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp TTSEEEEEEECGGGGGCHHHHH--------HHHHTTCCCC--CH----HHHHHHHHHHTCSEEEECCTTTCHHHHHHHHH
T ss_pred CCCCEEEEEEChhhccchhhhh--------hhcccccCcc--CH----HHHHHHHHHcCCCEEEEeccCCCcccHHHHHH
Confidence 4789999999999975421000 0000000000 00 1122233455656899999999998 999999
Q ss_pred HHHHhhhc
Q 024360 243 QIDNCIQW 250 (268)
Q Consensus 243 ~id~~~~~ 250 (268)
.+-+..-.
T Consensus 196 ~l~~~~~~ 203 (214)
T 3q3j_B 196 TASMLCLN 203 (214)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 98876543
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.81 E-value=6.2e-06 Score=67.69 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
..+++|+|++||||||+++.+++.+.+.++.+.+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 367899999999999999999999887777776543
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.80 E-value=8e-06 Score=67.91 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 338
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.79 E-value=1.4e-05 Score=70.03 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEecc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~ 38 (268)
-.++|+||||||||||++++++... .|.+.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 3589999999999999999999875 667766654
No 339
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00014 Score=71.17 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|+.|+|||||++.|.+-
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHh
Confidence 56899999999999999999875
No 340
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.79 E-value=3.3e-05 Score=67.19 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+-++|+|+.|+|||||++.+.|
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6689999999999999999997
No 341
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.77 E-value=9.3e-05 Score=70.32 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+-.+.|.||+|+||||+++++++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999854
No 342
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.77 E-value=9.7e-05 Score=72.01 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCC-ceEEEecc
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL 38 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~-G~v~i~~~ 38 (268)
.++|+||||+||||++++|++.+++.. |.+.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 578999999999999999999998887 56665543
No 343
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.77 E-value=0.00014 Score=65.94 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
-++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998875
No 344
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=9.9e-06 Score=66.03 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEec
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~ 37 (268)
.+++|+|++||||||+++.|++.+++ .| .+.+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 57889999999999999999998765 44 344444
No 345
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.74 E-value=4.7e-05 Score=62.73 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHhc--CCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~--~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||++++. +.+|+++|||||++ ||+.+...+. ++++.+.+. .+++++
T Consensus 73 ~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi 123 (173)
T 3kta_B 73 TALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI 123 (173)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred HHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence 888888874 11579999999999 9999998888 888888654 455444
No 346
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.74 E-value=0.00016 Score=69.24 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dl 177 (268)
.-.+.|.|.||+-....... .. +.. .. ++++++|+....+...++..+ ....-+.|.+-|.||+|+
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~---~~---l~~--~d-~ii~V~D~s~~~~~~~~~~~l-----~~~~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQ---FF---MTR--SS-VYMLLLDSRTDSNKHYWLRHI-----EKYGGKSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCH---HH---HHS--SE-EEEEEECGGGGGGHHHHHHHH-----HHHSSSCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHHHHH---HH---ccC--Cc-EEEEEEeCCCchhHHHHHHHH-----HHhCCCCCEEEEEECCCc
Confidence 45689999999732222111 11 222 22 345566766554433333211 111235899999999999
Q ss_pred cCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
.... .+. .+.+ .+.....+ ..++++|+.+++++.+++..|-+....
T Consensus 163 ~~~~-~v~------~~~~-------------------~~~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 163 NPSY-NIE------QKKI-------------------NERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp CTTC-CCC------HHHH-------------------HHHCGGGT-TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred cccc-ccC------HHHH-------------------HHHHHhcC-CceEEEecCcccCHHHHHHHHHHHHhc
Confidence 7643 111 0111 01111122 257888888888888888887776554
No 347
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=2.5e-06 Score=77.12 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC----CCCCceEEEe
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIV 36 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l----~~~~G~v~i~ 36 (268)
-.++|+||||+|||||+++++|.+ .+.+|.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 357899999999999999999987 4555555443
No 348
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.72 E-value=5.7e-05 Score=70.70 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.+.+-
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 349
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.72 E-value=5.8e-05 Score=69.78 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.|.+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhCh
Confidence 56899999999999999999874
No 350
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.71 E-value=8.4e-06 Score=68.48 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCc--eEEEec
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G--~v~i~~ 37 (268)
..+++|+|++||||||+++.|++.+.+..| .+.+.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 367899999999999999999999876666 555543
No 351
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=1.5e-05 Score=71.75 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~ 29 (268)
.++|.||+|+|||||++.+++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999876543
No 352
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.68 E-value=2.8e-05 Score=72.86 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=63.7
Q ss_pred CEEEEeCCCcCCHHhHH-HHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeecccccc
Q 024360 100 DYLVFDCPGQIELFTHV-PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~~-~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll 178 (268)
++.|+|.||+-|..... .........+.. ..+ +++++|+... .....++. ..-..+.|.+-|+||+|+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~--aD~-vllVvD~~~~----~~~~~~l~---~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYR--ADC-GILVTDSAPT----PYEDDVVN---LFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTS--CSE-EEEECSSSCC----HHHHHHHH---HHHHTTCCEEEECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhc--CCE-EEEEEeCCCh----HHHHHHHH---HHHhcCCCEEEEEeCcCCC
Confidence 68999999985432110 001122223322 222 3345676221 11112221 2223489999999999997
Q ss_pred CCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 179 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
.... . ....++. +.++ +.++++|+.+++++.+++..|-+.....
T Consensus 154 ~~~~-~---------~~~~~l~------------------~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 154 GEKA-E---------ELKGLYE------------------SRYE-AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TCCC-T---------HHHHHSS------------------CCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CccH-H---------HHHHHHH------------------HHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 6541 1 1111111 1222 4789999999999999999999888544
No 353
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.68 E-value=2.1e-05 Score=63.02 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
-+.+|+|||||||||++.+|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999974
No 354
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.66 E-value=0.00016 Score=66.39 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=51.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
-++.|.||+|||||||+..++.......+.|.+...+...+ .. .++.+|+....-.+... ...
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~-~~~ 137 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQP-DNG 137 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECC-SSH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecC-CcH
Confidence 36788999999999999887765444456777776553211 00 13444443211000000 011
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcC
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQI 110 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~L 110 (268)
.++ .++++.+.....++++++|..+.+
T Consensus 138 e~~-l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 138 EQA-LEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECTTTC
T ss_pred HHH-HHHHHHHHhcCCCCEEEEeChHHh
Confidence 223 344455543227899999999983
No 355
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.66 E-value=1.8e-05 Score=73.87 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=35.7
Q ss_pred HHHHHHHhcC--CCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~--~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||++++.. .+|+++|||||++ ||+..+..+. ++++.+.+.+.+++++
T Consensus 342 ~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~ 393 (430)
T 1w1w_A 342 AALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI 393 (430)
T ss_dssp HHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence 7778777720 1788999999998 9998887777 7777775445556544
No 356
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.65 E-value=2.3e-05 Score=63.43 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
|+.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998664
No 357
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.64 E-value=2e-05 Score=64.84 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+.+++|+|++||||||++..+.+.++..+-+|.+...++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4578999999999999999999988766557777766653
No 358
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.64 E-value=0.0002 Score=66.97 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
+-++++|+.|+|||||++.+.+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 359
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.63 E-value=3.4e-05 Score=66.09 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (268)
..+++|.||+||||||+++.|++.+.+ ++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 367899999999999999999999988 7777544
No 360
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.62 E-value=2.7e-05 Score=62.34 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.+++|.||+||||||+++.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998764
No 361
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.61 E-value=8e-05 Score=64.02 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
+..+.+.|+.|+||||++-.++..+...+-+|.+...||.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH 45 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 4568899999999999977776655444447888888874
No 362
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=0.00032 Score=62.99 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=26.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC-CCC-----CceEEEecc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC-ETV-----RRTMHIVNL 38 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l-~~~-----~G~v~i~~~ 38 (268)
.++.|.||+|||||||+..++... .+. .|.+.+...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 468899999999999999988753 331 455555443
No 363
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.60 E-value=0.00011 Score=64.15 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.+.|-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999973
No 364
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.60 E-value=4.2e-05 Score=70.15 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHh---------cCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHH
Q 024360 87 DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (268)
Q Consensus 87 ~~la~al~---------~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l 126 (268)
++||++|+ . +|+++|||||++ ||+..+..++ +++..+
T Consensus 274 l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~ 320 (359)
T 2o5v_A 274 VALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV 320 (359)
T ss_dssp HHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence 88999999 7 999999999999 9999998877 766665
No 365
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.57 E-value=0.00032 Score=66.33 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=40.4
Q ss_pred hcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHH
Q 024360 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 243 (268)
Q Consensus 164 ~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~ 243 (268)
.+.|.+-|+||+|+.... +...+...+.... .. ..-..++++|+.+++++.+++..
T Consensus 422 ~~~p~ilv~NK~Dl~~~~---------~~~~~~~~~~~~~--------------~~-~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAM---------KPHEIQEKLGLTR--------------IR-DRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp TTCEEEEEEECCSSSSCC---------CHHHHHHHTTCTT--------------CC-SSCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCcEEEEEECCCCCcCC---------CHHHHHHHhchhh--------------hh-cCCeEEEEEECCCCCCHHHHHHH
Confidence 478999999999996543 1111111111100 00 12257999999999999999999
Q ss_pred HHHhhhc
Q 024360 244 IDNCIQW 250 (268)
Q Consensus 244 id~~~~~ 250 (268)
|-+....
T Consensus 478 l~~~~~~ 484 (497)
T 3lvq_E 478 LTSNYKS 484 (497)
T ss_dssp HHHHCC-
T ss_pred HHHHHHh
Confidence 9877644
No 366
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.57 E-value=3.4e-05 Score=61.46 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.8
Q ss_pred eEEEEEcCCCccHHHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSL 22 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l 22 (268)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 367
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.56 E-value=0.00017 Score=64.84 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.+.|.||+|+||||+++.++..+.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.55 E-value=3.1e-05 Score=62.78 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+||+||||||+.+.|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368899999999999999998754
No 369
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=0.00033 Score=55.23 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=23.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCce
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~ 32 (268)
-+.|.||+|+|||++.+.+........+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 36799999999999999999876544443
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.53 E-value=4.6e-05 Score=62.01 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
|+.+++|.|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998754
No 371
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.53 E-value=0.00039 Score=65.53 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.++|||||++.|.+.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999863
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.53 E-value=4.6e-05 Score=62.08 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
...++|+|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998643
No 373
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=4.4e-05 Score=63.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999865
No 374
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.53 E-value=0.0003 Score=68.64 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=61.8
Q ss_pred CEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccC
Q 024360 100 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~ 179 (268)
.+-|+|.||..|... ...+.++.-...+ + ++|+..-..+...-. +. .....+.|.+.|+||+|+..
T Consensus 72 ~l~liDTPGh~dF~~------ev~~~l~~aD~aI-L--VVDa~~gv~~qt~~~-~~----~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSY------EVSRSLAACEGAL-L--VVDAGQGVEAQTLAN-CY----TAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEECCCCGGGHH------HHHHHHHHCSEEE-E--EEETTTCCCTHHHHH-HH----HHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEECCCchHHHH------HHHHHHHHCCEEE-E--EEECCCCCCHHHHHH-HH----HHHHCCCCEEEeeeccCccc
Confidence 577999999977432 2233344333333 2 345443222333221 11 12346889999999999964
Q ss_pred CccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 180 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
.. ++....+ +.+.+ .+....++++|+.++.++..++..|-+..-
T Consensus 138 a~----------~~~v~~e---------------i~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 138 AD----------PERVAEE---------------IEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CC----------HHHHHHH---------------HHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cc----------HHHHHHH---------------HHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 32 1111111 11111 111124799999999999999999877653
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.52 E-value=4e-05 Score=61.57 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
|+.+++|.|++||||||+.+.|+..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66779999999999999999998754
No 376
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.51 E-value=3.3e-05 Score=64.41 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.+++|+||+||||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5689999999999999999998764
No 377
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.51 E-value=0.00092 Score=58.04 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
-.+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999865
No 378
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.50 E-value=0.00012 Score=70.04 Aligned_cols=46 Identities=22% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCC--CEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 87 DWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 87 ~~la~al~~~~~p--~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++||++++. +| +++|||||++ ||+.....+. ++++.+++ +.+|++|
T Consensus 406 v~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i 454 (517)
T 4ad8_A 406 VMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV 454 (517)
T ss_dssp HHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE
T ss_pred HHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 899999999 99 9999999999 9999998888 88999876 7777766
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=4.9e-05 Score=65.80 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
+..++|+||+||||||+.+.|++.+. .+.+.+.+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 56889999999999999999998764 23444444
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.49 E-value=6e-05 Score=63.26 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g 24 (268)
+++++|.|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999998
No 381
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.48 E-value=0.00071 Score=67.03 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 210 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 210 l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
+...+.+.+....++..++.|+.+..++..|+..|.+..-..
T Consensus 242 ~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 283 (691)
T 1dar_A 242 LVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSP 283 (691)
T ss_dssp HHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCCh
Confidence 334444555555667888889999999999999998876443
No 382
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.48 E-value=5.5e-05 Score=62.53 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
|+.+++|.|++||||||+.+.+++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 66689999999999999999999854
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=6.3e-05 Score=61.30 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998653
No 384
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.48 E-value=0.00061 Score=65.48 Aligned_cols=30 Identities=3% Similarity=-0.133 Sum_probs=24.1
Q ss_pred CCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 222 SMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 222 ~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
.++.+++.|+.+..++..|+..|.+..-..
T Consensus 249 ~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p 278 (528)
T 3tr5_A 249 ELTPIFFGSAINNFGVGELLDAFVKEAPPP 278 (528)
T ss_dssp SEEEEEECBGGGTBSHHHHHHHHHHHSCCC
T ss_pred ceeEEEeccccCCccHHHHHHHHHHhCCCC
Confidence 445777889999999999999998766443
No 385
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.46 E-value=0.0014 Score=61.15 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 222 SMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 222 ~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
++-.++++|+.++.++.+++..|-+...
T Consensus 138 g~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 138 GFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp SSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 3346889999999999999999877664
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.46 E-value=1.6e-05 Score=66.31 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEE
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (268)
+++|.|++||||||+++.|...+...+.++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68899999999999999999988655445543
No 387
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.46 E-value=0.00047 Score=67.23 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=62.2
Q ss_pred CEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeEeeccccccC
Q 024360 100 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 179 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll~ 179 (268)
.+-|+|.||..|... ...+.++.-...+ .++|+..-..+...-. +. .....+.|.+.|+||+|+..
T Consensus 74 ~inliDTPGh~dF~~------ev~r~l~~aD~aI---LVVDa~~gv~~qt~~~-~~----~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSY------EVSRALAACEGAL---LLIDASQGIEAQTVAN-FW----KAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEECCCCSGGGHH------HHHHHHHTCSEEE---EEEETTTBCCHHHHHH-HH----HHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEECCCcHhHHH------HHHHHHHhCCEEE---EEEECCCCccHHHHHH-HH----HHHHCCCCEEEEEeccCccc
Confidence 567999999977432 2233344333323 2355544333433321 11 12357899999999999964
Q ss_pred CccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC--eeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 180 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
.. .+...+++.+ .+++ ..++++|+.++.++.+++..|-+..-
T Consensus 140 a~----------~~~v~~el~~------------------~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 140 AD----------VDRVKKQIEE------------------VLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CC----------HHHHHHHHHH------------------TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cC----------HHHHHHHHHH------------------hhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 32 1111111111 1111 24899999999999999998876543
No 388
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.45 E-value=7.6e-05 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+++++|+|++||||||+++.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 478999999999999999999985
No 389
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.45 E-value=0.00042 Score=72.07 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++++|+.|+|||||++.|.+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999873
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=7e-05 Score=61.15 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999998754
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.43 E-value=5.1e-05 Score=61.82 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
|+.+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 66679999999999999999998743
No 392
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.43 E-value=5.8e-05 Score=73.58 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
.-++|+|+.|+|||||++.|.+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999965
No 393
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=7.7e-05 Score=60.67 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999998553
No 394
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.42 E-value=0.00021 Score=63.92 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
..+.|.||+|+|||+|+++++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998654
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.41 E-value=5.7e-05 Score=62.00 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+++.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998854
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.40 E-value=7.9e-05 Score=62.58 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
-+.+|+|||||||||++.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999998754
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=8.1e-05 Score=64.23 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+++++|.||+||||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 398
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.38 E-value=9.3e-05 Score=60.18 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
..++|.|++||||||+++.|+..+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998765
No 399
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.38 E-value=8.4e-05 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+-++|+|++|+|||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999864
No 400
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.37 E-value=0.00039 Score=60.87 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..+.|.||+|+||||+++++++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 401
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.37 E-value=9e-05 Score=60.33 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+..++|+||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998754
No 402
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.37 E-value=0.0023 Score=64.08 Aligned_cols=78 Identities=8% Similarity=0.097 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCcCC------HH-hHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHHHHHHHhhcCCeeE
Q 024360 98 DDDYLVFDCPGQIE------LF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (268)
Q Consensus 98 ~p~~lilDEP~~LD------~~-~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~i~ 170 (268)
.+++.|+|.||-.. +. ....+. +++.........+ +++++|+..-....... ......-..+.|.+-
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~-~lv~~yi~~~aDl-IL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvIl 222 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCL-ILAVSPANSDLANSDAL----KIAKEVDPQGQRTIG 222 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHH-HHHHHHHTSTTEE-EEEEEETTSCSSSCHHH----HHHHHHCTTCSSEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHH-HHHHHHHhcCCcE-EEEEEcCCCCcchhHHH----HHHHHHHhcCCCEEE
Confidence 56899999999633 11 122333 5566555433344 45567765421111110 011222245789999
Q ss_pred eeccccccCCc
Q 024360 171 ILSKMDLVTNK 181 (268)
Q Consensus 171 vlsk~dll~~~ 181 (268)
|+||+|++.+.
T Consensus 223 VlNKiDlv~~~ 233 (772)
T 3zvr_A 223 VITKLDLMDEG 233 (772)
T ss_dssp EEECTTSSCTT
T ss_pred EEeCcccCCcc
Confidence 99999998653
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.36 E-value=9.8e-05 Score=64.08 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.+++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999864
No 404
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.36 E-value=0.00013 Score=60.26 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceE
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v 33 (268)
+..++|.|++||||||+++.|+..+... |.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~ 34 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK-RDV 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT-SCE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCE
Confidence 3689999999999999999999876543 344
No 405
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.35 E-value=0.00011 Score=69.92 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|++|+|||||++.+++-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 56899999999999999999974
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.35 E-value=9.6e-05 Score=60.71 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998654
No 407
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.34 E-value=0.00098 Score=66.05 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 210 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 210 l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
+...+.+.+....++..+..|+.+..++..|+..|.+.+-..
T Consensus 240 ~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP 281 (693)
T 2xex_A 240 LKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSP 281 (693)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCG
T ss_pred HHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCc
Confidence 344455555556667888889999999999999998876443
No 408
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.34 E-value=0.00025 Score=64.44 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=29.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
.+.|.|++|+|||||+..++......++.|.+..+.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578999999999999999887655566778777654
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.33 E-value=0.00012 Score=64.49 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHc
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g 24 (268)
|+.++.|.|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999999997
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=0.0001 Score=68.05 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEE
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i 35 (268)
.+++|+||||||||||+++++|.. +|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 478999999999999999999953 566554
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.29 E-value=0.00014 Score=62.73 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 57899999999999999999988543
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.29 E-value=0.0001 Score=64.18 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
...++|+|++||||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999865
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.29 E-value=0.00017 Score=65.59 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
|+.+++|.||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 414
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.00014 Score=60.25 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
++.++|.|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 415
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.28 E-value=0.00012 Score=67.92 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
..-++|+|+||+|||||++.++|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999986
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.27 E-value=0.00015 Score=59.76 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+..++|.|+.||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 417
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.27 E-value=0.00038 Score=63.64 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHhcCCC-CCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 024360 88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (268)
Q Consensus 88 ~la~al~~~~~-p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v 136 (268)
++|+++.. + |+++|||||++ ||+..+..+. ++++.+.+ +.+++++
T Consensus 296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~ 342 (371)
T 3auy_A 296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII 342 (371)
T ss_dssp HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence 56778887 8 99999999999 9999998888 77777643 3455544
No 418
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.27 E-value=0.0004 Score=69.98 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
-.++|+|||||||||+++++++.+.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999999864
No 419
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.00051 Score=54.00 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 024360 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (268)
Q Consensus 98 ~p~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d 140 (268)
+..++++||...+.......++ +++......+..+|++.-.+
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCC
Confidence 5679999999999888776666 66555433356666554333
No 420
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00014 Score=64.47 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+..+.|.||+||||||+++.++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998754
No 421
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.24 E-value=0.0018 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
-.+.|.||+|+||||+++.++..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999864
No 422
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.24 E-value=0.0034 Score=62.30 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=22.5
Q ss_pred cCCeeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 221 YSMVSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
-.++..+..|+.+..++..|+..|.+..-
T Consensus 259 ~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lP 287 (704)
T 2rdo_7 259 NEIILVTCGSAFKNKGVQAMLDAVIDYLP 287 (704)
T ss_pred CCeeEEEEeecccCccHHHHHHHHHHHCC
Confidence 34466777799999999999998877643
No 423
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.24 E-value=0.00015 Score=61.91 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+++++|+|++||||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999743
No 424
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.24 E-value=0.0017 Score=54.94 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=62.5
Q ss_pred CEEEEeCCCcCCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc-ccccCHHHHHHHHHHHHHHHHhhcCCeeEeecccccc
Q 024360 100 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (268)
Q Consensus 100 ~~lilDEP~~LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~-~~~~d~~~~~s~~l~~~~~~~~~~~p~i~vlsk~dll 178 (268)
++-|.|.+||=..... ....-+....++++|.++. ..+.+...++.. ......-+.|.+-|.||+|+.
T Consensus 63 ~l~iwDtaGqe~~~~l-------~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~----i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 63 RLQLWDTAGLERFRSL-------IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEECCSCTTTCGGG-------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHH----HHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhhH-------HHHHhccccEEEEEeecchhHHHHHHHHHHHH----HHHhcCCCCeEEEEeeccchH
Confidence 4668999998322221 1112233344556655443 223444443332 222233567888889999985
Q ss_pred CCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 179 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
... .+ . .+ +. . .+ ..+++ +.|+..|+.+++++.+++..|-+.+...
T Consensus 132 ~~r-~V----~--~~----e~--------~----~~---a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 132 DKR-QV----S--IE----EG--------E----RK---AKELN-VMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp GGC-CS----C--HH----HH--------H----HH---HHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred hcC-cc----c--HH----HH--------h----hH---HHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 432 11 1 00 00 1 11 12334 4689999999999999999998776543
No 425
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00016 Score=59.28 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
..++|+|++||||||+++.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999985
No 426
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.23 E-value=0.00015 Score=59.20 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 427
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00023 Score=63.54 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+.|.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 428
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.22 E-value=0.00016 Score=59.89 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+..++|.|+.||||||+++.|+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997643
No 429
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.22 E-value=0.00016 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~ 28 (268)
.++|.|+.||||||+++.|+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.22 E-value=8.3e-05 Score=71.70 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
-+++|+||||+||||+++++++.+.+..|.+.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 36899999999999999999999987777665544
No 431
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.21 E-value=0.00019 Score=59.33 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+++.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999998654
No 432
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.21 E-value=0.00025 Score=65.01 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
|.+-++|+|++|+|||||++.+++-
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 6678999999999999999999983
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.20 E-value=0.00017 Score=60.97 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+++|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
No 434
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.18 E-value=0.00015 Score=66.69 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCceEEEec
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~ 37 (268)
-++|+||+||||||+++.+.+...+.++.|.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999998777888887753
No 435
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.18 E-value=0.00018 Score=59.88 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l 26 (268)
++|+||+|||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987654
No 436
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00019 Score=59.97 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++|.||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.16 E-value=0.00012 Score=59.24 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 438
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.14 E-value=0.00025 Score=60.49 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++.|+||+||||||.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999754
No 439
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.14 E-value=0.00021 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998653
No 440
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00022 Score=59.63 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 441
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.13 E-value=0.00019 Score=60.45 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+..++|+||+||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999998764
No 442
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.12 E-value=0.0003 Score=67.15 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
-.++|+||||+|||||++++++... .+.+.+.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 4689999999999999999999864 66778777543
No 443
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.12 E-value=0.00022 Score=57.91 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|.|++||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998653
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.11 E-value=0.00027 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+..++|.||+||||||+++.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998654
No 445
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.004 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..+.|.||+|+||||+++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 468899999999999999999875
No 446
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.10 E-value=0.00024 Score=60.08 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|.|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999754
No 447
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00033 Score=58.41 Aligned_cols=178 Identities=13% Similarity=0.172 Sum_probs=93.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCC----CCCChhhhH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLG----PNGGLIYCM 78 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~----~~g~~~~~~ 78 (268)
..++|+|+.|||||||++.+++..... .++.+.+.++.. + .+. ..++..+.. +.++. .+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~---------~-~d~----~~~~~~~~~~~~~~~~~~-~~- 93 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS---------K-ADY----ERVRRFGIKAEAISTGKE-CH- 93 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC---------H-HHH----HHHHTTTCEEEECCCTTC-SS-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC---------c-hhH----HHHHhCCCcEEEecCCce-ee-
Confidence 578999999999999999999875443 456666555421 1 111 111111211 11111 00
Q ss_pred hhhhhhHHHHHHHHHhcCCCCCEEEEeCCCc-CCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccCHHHHHHHHHHH
Q 024360 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (268)
Q Consensus 79 ~~~~~~ls~~la~al~~~~~p~~lilDEP~~-LD~~~~~~i~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (268)
... .++..++....+++++|+|.||+ ..+... . + .. . .++.++|+....+... .
T Consensus 94 -~~~----~~~~~~~~~~~~~d~iiidt~G~~~~~~~~-----~----~-~~-~--~~i~vvd~~~~~~~~~---~---- 148 (221)
T 2wsm_A 94 -LDA----HMIYHRLKKFSDCDLLLIENVGNLICPVDF-----D----L-GE-N--YRVVMVSVTEGDDVVE---K---- 148 (221)
T ss_dssp -CCH----HHHHTTGGGGTTCSEEEEEEEEBSSGGGGC-----C----C-SC-S--EEEEEEEGGGCTTHHH---H----
T ss_pred -ccc----HHHHHHHHhcCCCCEEEEeCCCCCCCCchh-----c----c-cc-C--cEEEEEeCCCcchhhh---h----
Confidence 011 12222221112789999999998 433211 0 1 11 1 2334456544322110 0
Q ss_pred HHHHHhhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcC-CeeeEEeeccChhh
Q 024360 158 LSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESS 236 (268)
Q Consensus 158 ~~~~~~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~-~~~~~~l~~~~~~~ 236 (268)
.. -..+.|.+-|+||+|+..... . +.+.+. .. +..++ -..++++|+.++++
T Consensus 149 ~~--~~~~~~~iiv~NK~Dl~~~~~-~------~~~~~~---------------~~----~~~~~~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 149 HP--EIFRVADLIVINKVALAEAVG-A------DVEKMK---------------AD----AKLINPRAKIIEMDLKTGKG 200 (221)
T ss_dssp CH--HHHHTCSEEEEECGGGHHHHT-C------CHHHHH---------------HH----HHHHCTTSEEEECBTTTTBT
T ss_pred hh--hhhhcCCEEEEecccCCcchh-h------HHHHHH---------------HH----HHHhCCCCeEEEeecCCCCC
Confidence 00 124688999999999864310 0 111110 01 11112 25789999999999
Q ss_pred HHHHHHHHHHhhhc
Q 024360 237 IRYVLSQIDNCIQW 250 (268)
Q Consensus 237 ~~~l~~~id~~~~~ 250 (268)
+.+++..|.+....
T Consensus 201 i~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 201 FEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876644
No 448
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=9.1e-05 Score=66.63 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
+++.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 68999999999999999999887766655454444
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.09 E-value=0.00028 Score=58.89 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
++++|.|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999975
No 450
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.09 E-value=0.00086 Score=64.45 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=24.2
Q ss_pred cCCeeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 221 YSMVSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 221 ~~~~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
..++..++.|+.+..++..|+..|.+..-.
T Consensus 249 ~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 249 GEITPVFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp TSEEEEEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred CceeEEEeeecccCCCHHHHHHHHHHhCCC
Confidence 345677888999999999999999886543
No 451
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.09 E-value=0.00027 Score=59.33 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999998864
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.08 E-value=0.00027 Score=62.22 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g 24 (268)
+++++|.|++||||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999985
No 453
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.00028 Score=60.66 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
-.+.|.||+|+||||+++++++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998753
No 454
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.07 E-value=0.00027 Score=58.62 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+.+++|.|+.||||||+++.|+..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999997653
No 455
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.07 E-value=0.00087 Score=56.60 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=32.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 5 ~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
++|.|..|+||||+.-.++..+...+.+|.+...|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4458999999999999999998877779999999985
No 456
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00033 Score=55.89 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998854
No 457
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.03 E-value=0.00097 Score=62.05 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~ 29 (268)
-+++|+|||||||||++++|++++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 478999999999999999999987654
No 458
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.01 E-value=0.00041 Score=60.21 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+..++|.|++||||||+.+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999998643
No 459
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.00 E-value=0.013 Score=52.08 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=26.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
-.+.|.|++|+|||||+..++.........|.+..+.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3678999999999999988875433233456655543
No 460
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.99 E-value=0.004 Score=55.39 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g 24 (268)
-++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998875
No 461
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.99 E-value=0.0022 Score=57.89 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=46.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC--CceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhh
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~~~--~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~ 81 (268)
++.|.||+|||||||+-.++--.... .|.+.+..-. +.+ +. ..++.+|+....-++.+ ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E---~s~------~~-------~ra~~lGvd~d~llv~~-~~~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE---FGI------TP-------AYLRSMGVDPERVIHTP-VQS 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS---CCC------CH-------HHHHHTTCCGGGEEEEE-CSB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc---chh------hH-------HHHHHhCCCHHHeEEEc-CCC
Confidence 56899999999999966554332221 4555554311 111 10 12566666543211111 111
Q ss_pred hhhHHHHHHHHH--hcCCCCCEEEEeCCCcC
Q 024360 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQI 110 (268)
Q Consensus 82 ~~~ls~~la~al--~~~~~p~~lilDEP~~L 110 (268)
.+++..+++..+ +....|+++++|--+++
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEeccccc
Confidence 112213344454 32227999999988773
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.97 E-value=0.00039 Score=58.83 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.00043 Score=62.49 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
|+..++|+||+||||||+.+.|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 566899999999999999999998653
No 464
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.97 E-value=0.00041 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998753
No 465
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.93 E-value=0.0031 Score=53.84 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=24.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEe
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~ 36 (268)
.++.+.||.||||||++-.++.-+...+.+|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999997766655444344466665
No 466
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00078 Score=61.65 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 024360 4 AQLVIGPAGSGKSTYCSSLYR 24 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g 24 (268)
+++|+|||||||||++++|++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999997
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.93 E-value=0.00011 Score=65.16 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d 39 (268)
+++++|.||+||||||+++.+...+...+-++.+...|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 46899999999999999999988543222234444433
No 468
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.88 E-value=0.00066 Score=56.99 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHH
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSL 22 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l 22 (268)
|++++.+.|++||||||++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 6778999999999999997664
No 469
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.00047 Score=57.65 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l 26 (268)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 470
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.86 E-value=0.00053 Score=57.62 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998865
No 471
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.86 E-value=0.0016 Score=65.33 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.++|+||+||||||++..+.+...
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999888866433
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.85 E-value=0.00047 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+++++|.|++||||||+++.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998854
No 473
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.84 E-value=0.0029 Score=69.10 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=64.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCCcCCCCCCCcccChhhhhhHHHHHHHhCCCCCCChhhhHhhhh
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~~~~~y~~~~~i~~~i~~~~~m~~~~L~~~g~~~~~~~~~~ 82 (268)
.++.|.||+|+|||||+..++.-....++++.+....-. +... .++.+|+.-..-.+.+.+ ..
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~---------------~~~l-~a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---------------LDPI-YARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC---------------CCHH-HHHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc---------------cCHH-HHHHcCCCchhceeecCC-hH
Confidence 468899999999999998886654445566665542211 0000 034444322111111111 11
Q ss_pred hhHHHHHHHHHhcCCCCCEEEEeCCCcCCHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEec
Q 024360 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLL 139 (268)
Q Consensus 83 ~~ls~~la~al~~~~~p~~lilDEP~~LD~~~-------------~----~~i~~~ll~~l~~~~~~ii~v~l~ 139 (268)
+++ .++++.++....|+++++||-..+-+.. . ...+.+++..+.+.+.+++.++..
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 223 4455555422289999999987633321 2 233445555555667777777654
No 474
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.80 E-value=0.00062 Score=53.55 Aligned_cols=26 Identities=12% Similarity=0.370 Sum_probs=22.7
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhh
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQ 249 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~ 249 (268)
+.++++|+.+++++.+++..|-+...
T Consensus 139 ~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 139 IPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887664
No 475
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.80 E-value=0.0012 Score=55.55 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCeEEEEEc-CCCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 1 ~~~~~~liG-pnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
|..+++|.| ..|+||||+.-.++..+...+.+|.+...|+..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 555666665 568999999999999887666689999999854
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.77 E-value=0.0029 Score=51.89 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCeEEEEE-cCCCccHHHHHHHHHcCCCCCCceEEEeccCCc
Q 024360 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (268)
Q Consensus 1 ~~~~~~li-GpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~ 41 (268)
|+. ++|. +..|+||||+.-.++..+...+.+|.+...||.
T Consensus 1 M~v-i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKV-ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEE-EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeE-EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 544 4555 678899999999999988766668999998864
No 477
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.00068 Score=53.91 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=23.0
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhhc
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQW 250 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~~ 250 (268)
..++++|+.+++++.+++..|-+....
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998876543
No 478
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.77 E-value=0.015 Score=54.31 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=27.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCC-CCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~-~~G~v~i~~~d 39 (268)
-.+.|.|++|+|||||+..++..... .+..|.+....
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 36789999999999999988876543 23356665543
No 479
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.00075 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
..++|+|++||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999764
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.76 E-value=0.00078 Score=56.27 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCceEEEeccCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~ 40 (268)
.+.++|+|+.|||||||++.+++..... ..+.+.+.++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 3678999999999999999998765433 3455555443
No 481
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.76 E-value=0.00064 Score=62.14 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred eEEEEEcCCCccHHHHHHHHH
Q 024360 3 YAQLVIGPAGSGKSTYCSSLY 23 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~ 23 (268)
-+.+|+|||||||||++.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999987
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.013 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
+-++.+.||+|+|||++.+++++...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 35788999999999999999998643
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.0014 Score=55.32 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=24.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC-CCCCCceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~-l~~~~G~v~i~~~d 39 (268)
-++.|.|++|+|||||+..++-. .....+.+.+....
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 46789999999999998765421 22223456665543
No 484
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.66 E-value=0.00089 Score=59.24 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
..+.|.||+|+||||+++++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4688999999999999999998753
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.65 E-value=0.0041 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~ 25 (268)
++.|.||+|+|||||+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4679999999999999998763
No 486
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.60 E-value=0.0021 Score=54.84 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCeEEEEEc-CCCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 1 ~~~~~~liG-pnGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
|..+++|.| ..|+||||+.-.++..+...+.+|.+...|+..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 555666655 567999999999999887666689999999854
No 487
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.59 E-value=0.0011 Score=53.27 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=39.2
Q ss_pred hhcCCeeEeeccccccCCccccccccCcCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccChhhHHHHHH
Q 024360 163 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 242 (268)
Q Consensus 163 ~~~~p~i~vlsk~dll~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~ 242 (268)
..+.|.+-|.||+|+.... .. .... . . .+ ...++ +.++++|+.+++++.+++.
T Consensus 113 ~~~~piilv~nK~Dl~~~~-~~------~~~~----~--------~----~~---~~~~~-~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 113 SQNIVIILCGNKKDLDADR-EV------TFLE----A--------S----RF---AQENE-LMFLETSALTGENVEEAFV 165 (186)
T ss_dssp CTTCEEEEEEECGGGGGGC-CS------CHHH----H--------H----HH---HHHTT-CEEEECCTTTCTTHHHHHH
T ss_pred CCCCcEEEEEECccccccc-cc------CHHH----H--------H----HH---HHHcC-CEEEEecCCCCCCHHHHHH
Confidence 3578899999999996432 11 0000 0 0 11 11223 5789999999999999999
Q ss_pred HHHHhhh
Q 024360 243 QIDNCIQ 249 (268)
Q Consensus 243 ~id~~~~ 249 (268)
.+-+...
T Consensus 166 ~l~~~~~ 172 (186)
T 2bme_A 166 QCARKIL 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 488
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.58 E-value=0.0012 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.+.|.||+|+||||+++.++..+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988653
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.57 E-value=0.0013 Score=58.99 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q 024360 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (268)
Q Consensus 2 ~~~~~liGpnGSGKSTLl~~l~g~l 26 (268)
+.+++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999865
No 490
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.56 E-value=0.056 Score=51.06 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=26.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCC-CceEEEeccC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLD 39 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d 39 (268)
..+.|.|++|+|||||+..++-..... +..|.+....
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 367899999999999988877654433 4466666543
No 491
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.53 E-value=0.0013 Score=55.73 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCceEE
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (268)
..++|-|+.||||||+++.+...+...+-+|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 67889999999999999999998876544554
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.50 E-value=0.0017 Score=54.62 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCceEE
Q 024360 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (268)
Q Consensus 1 ~~~~~~liGpnGSGKSTLl~~l~g~l~~~~G~v~ 34 (268)
|...++|=|+-||||||.++.|+..+.. +.++.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~ 33 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 33 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE
Confidence 6666789999999999999999998853 33443
No 493
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.014 Score=52.47 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
-.+.|.||+|+|||++++.++.-+.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998763
No 494
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.49 E-value=0.00047 Score=65.87 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+.+|+|+|||||||++.+|..+
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999999665
No 495
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.49 E-value=0.0032 Score=53.15 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=32.7
Q ss_pred eEEEEE-cCCCccHHHHHHHHHcCCCCC-CceEEEeccCCcC
Q 024360 3 YAQLVI-GPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA 42 (268)
Q Consensus 3 ~~~~li-GpnGSGKSTLl~~l~g~l~~~-~G~v~i~~~d~~~ 42 (268)
.+++|. +..|+||||+.-.++..+... +.+|.+...|+..
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 46 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPF 46 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCC
Confidence 455555 557899999999999988876 7789999999864
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0015 Score=52.63 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=23.8
Q ss_pred eeeEEeeccChhhHHHHHHHHHHhhhcc
Q 024360 224 VSFMPLDLRKESSIRYVLSQIDNCIQWG 251 (268)
Q Consensus 224 ~~~~~l~~~~~~~~~~l~~~id~~~~~~ 251 (268)
+.|+++|+.+.+++.+++..+-+.....
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999988776543
No 497
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.47 E-value=0.0015 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 024360 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (268)
Q Consensus 4 ~~~liGpnGSGKSTLl~~l~g~l~ 27 (268)
.+.|.||+|+||||+++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999987654
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.47 E-value=0.0014 Score=52.75 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999974
No 499
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.46 E-value=0.0011 Score=60.92 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q 024360 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (268)
Q Consensus 3 ~~~~liGpnGSGKSTLl~~l~g~ 25 (268)
+-++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999999985
No 500
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.46 E-value=0.009 Score=52.90 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=33.1
Q ss_pred eEEEEEcC-CCccHHHHHHHHHcCCCCCCceEEEeccCCcC
Q 024360 3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (268)
Q Consensus 3 ~~~~liGp-nGSGKSTLl~~l~g~l~~~~G~v~i~~~d~~~ 42 (268)
.+++|.|+ .|+||||+...|+..+...+.+|.+++.|+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 46778887 69999999999998887666689999999854
Done!