BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024361
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast
          Length = 131

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 177 FQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAK---FEAAADRKIYSKTHYIISGH 233
           + L PT A P  TF  PP     + W    GF L       E A +RKI    +++   +
Sbjct: 56  YHLHPTFANPNRTFTDPPFRIEEQGW---GGFPLDISVFLLEKAGERKIPHDLNFLQESY 112

Query: 234 SLEHLCS 240
            +EH+  
Sbjct: 113 EVEHVIQ 119


>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain
          Length = 140

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 177 FQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAK---FEAAADRKIYSKTHYIISGH 233
           + L PT A P  TF  PP     + W    GF L       E A +RKI    +++   +
Sbjct: 59  YHLHPTFANPNRTFTDPPFRIEEQGW---GGFPLDISVFLLEKAGERKIPHDLNFLQESY 115

Query: 234 SLEHLCS 240
            +EH+  
Sbjct: 116 EVEHVIQ 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.144    0.466 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,600,785
Number of Sequences: 62578
Number of extensions: 293988
Number of successful extensions: 735
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 17
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.9 bits)