BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024361
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q660X2|DNLJ_BORGA DNA ligase OS=Borrelia garinii (strain PBi) GN=ligA PE=3 SV=1
Length = 660
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 172 RLCMTFQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAKFEAAADRKIYS 224
+ CM I + ++FLF ++ S LY FY L KF+ DRK+Y+
Sbjct: 431 KNCMD---IEGFSDKTISFLFEKEFISSEIDLYTFNFYKLLKFKGFKDRKVYN 480
>sp|Q0SMV7|DNLJ_BORAP DNA ligase OS=Borrelia afzelii (strain PKo) GN=ligA PE=3 SV=1
Length = 660
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 172 RLCMTFQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAKFEAAADRKIYS 224
+ CM I + ++FLF K+ S LY FY L KF+ DRKI +
Sbjct: 431 KNCMD---IEGFSDKTISFLFEKKFISSEIDLYTFNFYKLLKFKGFKDRKINN 480
>sp|B7J2B3|DNLJ_BORBZ DNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=ligA PE=3 SV=1
Length = 660
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 172 RLCMTFQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAKFEAAADRKI 222
+ CM I + +++FLF K+ S LY FY L +F+ DRKI
Sbjct: 431 KNCMD---IEGFSDKIISFLFEKKFIFSEIDLYTFDFYKLLEFKGFKDRKI 478
>sp|O51502|DNLJ_BORBU DNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=ligA PE=3 SV=1
Length = 660
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 172 RLCMTFQLIPTIAIPVVTFLFPPKYTHSRCWLYATGFYLLAKFEAAADRKI 222
+ CM I + +++FLF K+ S LY FY L +F+ DRKI
Sbjct: 431 KNCMD---IEGFSDKIISFLFEKKFIFSEIDLYTFDFYKLLEFKGFKDRKI 478
>sp|Q8CRU8|Y1574_STAES UPF0421 protein SE_1574 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1574 PE=3 SV=1
Length = 328
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 119 VMWDTLPMMIAYASLFSSLLAERVDAKIGLSCLIALVSVSFLSMIY-ARTFNDFRLCMTF 177
V D P+ A ++ F+ L+ +++ ++G + + L SV+ + I+ A FN F +T
Sbjct: 77 VFGDQSPLSYALSATFTILICTKLNLQVGTTVAV-LTSVAMIPSIHEAYVFNFFSRLLT- 134
Query: 178 QLIPTIAIPVVTFL-FPPKYTHS-------------RCWLYATGFYLLAKFEAAADRKIY 223
LI + +V F+ PPKY H R + LL KF + K
Sbjct: 135 ALIGLVTAGLVNFIILPPKYYHQLEEQLALSEKKMYRLFYERCNELLLGKFSSEKTSKEL 194
Query: 224 SKTHYIISGHSLEHLCS 240
SK + I +E L S
Sbjct: 195 SKLNII--AQKVETLMS 209
>sp|Q5HN45|Y1427_STAEQ UPF0421 protein SERP1427 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1427 PE=3 SV=1
Length = 328
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 119 VMWDTLPMMIAYASLFSSLLAERVDAKIGLSCLIALVSVSFLSMIY-ARTFNDFRLCMTF 177
V D P+ A ++ F+ L+ +++ ++G + + L SV+ + I+ A FN F +T
Sbjct: 77 VFGDQSPLSYALSATFTILICTKLNLQVGTTVAV-LTSVAMIPGIHEAYVFNFFSRLLT- 134
Query: 178 QLIPTIAIPVVTFL-FPPKYTHS-------------RCWLYATGFYLLAKFEAAADRKIY 223
LI + +V F+ PPKY H R + LL KF + K
Sbjct: 135 ALIGLVTAGLVNFIILPPKYYHQLEEQLALSEKKMYRLFYERCNELLLGKFSSEKTSKEL 194
Query: 224 SKTHYIISGHSLEHLCS 240
SK + I +E L S
Sbjct: 195 SKLNII--AQKVETLMS 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.144 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,456,198
Number of Sequences: 539616
Number of extensions: 3758836
Number of successful extensions: 11782
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11776
Number of HSP's gapped (non-prelim): 10
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 60 (27.7 bits)