Query 024361
Match_columns 268
No_of_seqs 112 out of 127
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05875 Ceramidase: Ceramidas 100.0 1.5E-34 3.2E-39 262.9 18.9 194 52-253 23-236 (262)
2 KOG2329 Alkaline ceramidase [L 99.7 1.5E-17 3.3E-22 152.3 10.1 192 52-253 31-240 (276)
3 PF03006 HlyIII: Haemolysin-II 98.1 0.00022 4.8E-09 62.4 15.7 193 54-246 5-220 (222)
4 PF13965 SID-1_RNA_chan: dsRNA 97.9 0.0022 4.7E-08 65.4 20.1 111 35-145 253-368 (570)
5 PRK15087 hemolysin; Provisiona 97.8 0.0075 1.6E-07 54.2 21.5 185 53-249 14-210 (219)
6 PF04080 Per1: Per1-like ; In 97.7 0.0042 9E-08 57.8 18.3 208 32-248 34-259 (267)
7 TIGR01065 hlyIII channel prote 97.7 0.0051 1.1E-07 54.5 18.1 182 55-248 2-197 (204)
8 KOG2970 Predicted membrane pro 96.6 0.12 2.6E-06 48.8 15.5 202 33-244 85-299 (319)
9 COG1272 Predicted membrane pro 96.3 0.2 4.3E-06 45.6 15.0 188 54-250 20-218 (226)
10 PF12036 DUF3522: Protein of u 96.1 0.17 3.6E-06 44.6 12.8 63 57-135 10-78 (186)
11 PF14325 DUF4383: Domain of un 91.2 3.3 7.2E-05 34.4 10.3 90 13-108 2-93 (125)
12 COG5237 PER1 Predicted membran 90.9 9.2 0.0002 35.9 13.7 196 40-246 86-301 (319)
13 KOG4243 Macrophage maturation- 78.7 0.81 1.7E-05 42.2 0.6 184 53-252 84-289 (298)
14 TIGR02459 CbtB cobalt transpor 69.7 3.3 7.1E-05 30.4 1.8 22 34-55 37-59 (60)
15 PF04973 NMN_transporter: Nico 60.7 1.1E+02 0.0023 26.3 14.2 86 52-137 42-131 (181)
16 PF09489 CbtB: Probable cobalt 57.7 7.5 0.00016 27.9 1.8 22 34-55 31-53 (54)
17 KOG0748 Predicted membrane pro 56.5 57 0.0012 30.7 8.0 47 200-249 212-264 (286)
18 PRK14856 nhaA pH-dependent sod 55.5 2.3E+02 0.0051 28.5 16.5 153 19-178 25-194 (438)
19 PRK09560 nhaA pH-dependent sod 55.1 2.2E+02 0.0049 28.2 15.3 158 13-177 10-185 (389)
20 PRK09561 nhaA pH-dependent sod 54.9 2.3E+02 0.0049 28.1 15.3 157 13-176 10-184 (388)
21 TIGR01528 NMN_trans_PnuC nicot 46.6 2E+02 0.0043 25.1 10.7 107 53-168 44-158 (189)
22 PRK14853 nhaA pH-dependent sod 46.4 3.2E+02 0.0069 27.4 16.9 159 13-178 13-189 (423)
23 PF07695 7TMR-DISM_7TM: 7TM di 45.7 1.7E+02 0.0037 24.1 20.5 62 191-254 144-205 (205)
24 TIGR02235 menA_cyano-plnt 1,4- 43.8 2.7E+02 0.0059 25.9 15.6 44 93-137 138-181 (285)
25 TIGR00751 menA 1,4-dihydroxy-2 41.8 2.9E+02 0.0064 25.7 13.7 41 95-136 143-183 (284)
26 KOG3011 Ubiquitin-conjugating 41.5 40 0.00087 31.6 4.2 34 92-127 109-142 (293)
27 TIGR03663 conserved hypothetic 34.6 3.7E+02 0.008 26.7 10.2 22 118-139 320-341 (439)
28 PLN02922 prenyltransferase 34.4 4.1E+02 0.0089 25.2 14.4 23 115-137 186-208 (315)
29 PRK14855 nhaA pH-dependent sod 28.8 6.1E+02 0.013 25.5 14.5 152 18-176 19-187 (423)
30 COG3014 Uncharacterized protei 28.7 17 0.00037 35.7 -0.2 20 42-61 380-399 (449)
31 KOG2887 Membrane protein invol 27.8 3.8E+02 0.0082 23.7 7.9 81 8-105 39-125 (175)
32 PF10131 PTPS_related: 6-pyruv 26.8 7.1E+02 0.015 25.9 11.1 38 108-145 244-282 (616)
33 PRK14854 nhaA pH-dependent sod 25.4 6.8E+02 0.015 24.8 16.2 147 21-174 15-178 (383)
34 cd01206 Homer Homer type EVH1 25.2 28 0.00061 28.5 0.4 17 37-53 70-88 (111)
35 TIGR00769 AAA ADP/ATP carrier 24.5 7.3E+02 0.016 24.9 14.2 48 97-145 11-74 (472)
36 PF06965 Na_H_antiport_1: Na+/ 21.7 6.6E+02 0.014 24.8 9.1 146 26-178 19-182 (378)
37 PF07226 DUF1422: Protein of u 20.7 4.9E+02 0.011 21.6 7.1 41 60-102 36-78 (117)
No 1
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-34 Score=262.94 Aligned_cols=194 Identities=22% Similarity=0.283 Sum_probs=150.3
Q ss_pred CcchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHHHHHH
Q 024361 52 GVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMMIAYA 131 (268)
Q Consensus 52 gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ia~~ 131 (268)
-|+||+||+||++|+++|++|++.++|+ +++.++.++++|++.||+||++||+++++++|++||+||.++++
T Consensus 23 yiAEf~NtlSNl~fi~~al~gl~~~~~~--------~~~~~~~l~~~~l~~VGiGS~~FHaTl~~~~ql~DelPMl~~~~ 94 (262)
T PF05875_consen 23 YIAEFWNTLSNLAFIVAALYGLYLARRR--------GLERRFALLYLGLALVGIGSFLFHATLSYWTQLLDELPMLWATL 94 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhc--------cccchhHHHHHHHHHHHHhHHHHHhChhhhHHHhhhhhHHHHHH
Confidence 4999999999999999999999888764 33467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhHhhc-CC---hhHHHHHHHHHHHHHHHHHHhc-C---CCCcchhHH
Q 024361 132 SLFSSLLAERV-DAKIGLSCLIALVSVSFLSMIYARTF-ND---FRLCMTFQLIPTIAIPVVTFLF-P---PKYTHSRCW 202 (268)
Q Consensus 132 ~l~~~~~~er~-~~r~g~~~l~~Ll~~g~~sv~yw~~~-~d---lr~y~~vQ~~p~l~i~~~~~~~-~---~~~~~~~~~ 202 (268)
.+++..+.++. +.+.+......+...+.++..+.... ++ ...|...++..++......... + ++++..+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t~~~~~~~~p~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (262)
T PF05875_consen 95 LFLYIVLTRRYSSPRYRLALPLLLFIYAVVVTVLYFVLDNPVFHQIAFASLVLLVILRSIYLIRRRVRDACRRRRARRLL 174 (262)
T ss_pred HHHHHHhcccccCchhhHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHhcCchhhchHHHHHH
Confidence 99999999999 66655555555555555444444332 22 3445554444443333333331 1 233346777
Q ss_pred HHHHHHHHHHHHHHhhcHHHHhhccc-----------ccccchHHHHHHHHHHHHHHHHHhh
Q 024361 203 LYATGFYLLAKFEAAADRKIYSKTHY-----------IISGHSLEHLCSAIVPVLLSVMLMY 253 (268)
Q Consensus 203 ~~a~~~y~lAk~~e~~D~~ic~~~~~-----------~isGHsLwHL~aA~~~~~l~~~l~~ 253 (268)
..++++|++|+.+|++|+.+|+.... ++|||+|||+++|++.|+..+....
T Consensus 175 ~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~ 236 (262)
T PF05875_consen 175 LFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAY 236 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999753 3589999999999999988876443
No 2
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=99.73 E-value=1.5e-17 Score=152.27 Aligned_cols=192 Identities=16% Similarity=0.113 Sum_probs=125.2
Q ss_pred CcchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHHHHHH
Q 024361 52 GVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMMIAYA 131 (268)
Q Consensus 52 gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ia~~ 131 (268)
-|+||.|+.||.||++...+|+....++ ....++.+-.++.+.+|+||.|||.|++...|+.||+||...+.
T Consensus 31 yIAEf~NT~sN~~fil~~~~~l~~~y~~--------~~e~~~~l~~v~~~ivgl~S~~fH~TL~~~~QllDElamiw~i~ 102 (276)
T KOG2329|consen 31 YIAEFANTESNSPFILLAFIGLHCAYRQ--------KLEKRAYLICVLFTIVGLGSMYFHMTLVYKGQLLDELAMIWEIP 102 (276)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHHhhhhhhHHHhheehhhhhHHHHHH
Confidence 4999999999999999999998644433 34467888899999999999999999999999999999999443
Q ss_pred HHHHHHHHHHhhhh---hHHHHHHHHHH---HHHHHHHhHhhcCChhHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHH-
Q 024361 132 SLFSSLLAERVDAK---IGLSCLIALVS---VSFLSMIYARTFNDFRLCMTFQLIPTIAIPVVTFLFPPKYTHSRCWLY- 204 (268)
Q Consensus 132 ~l~~~~~~er~~~r---~g~~~l~~Ll~---~g~~sv~yw~~~~dlr~y~~vQ~~p~l~i~~~~~~~~~~~~~~~~~~~- 204 (268)
..+...-.+....+ ..+....-+++ +..+.+.+|.-..++.+|..+ .+.++++.+-..+..-.+..|....
T Consensus 103 ~~~~~cy~p~~~~~~~~~~~~tF~~~~~~~avt~~~l~~~~p~~n~v~~~~~--s~~v~v~~~~~~~~~~~~~~r~l~~~ 180 (276)
T KOG2329|consen 103 LVSLLCYFPKFLVKETFSKRLTFILVLLILAVTIVGLSFLEPIVNAVALGFF--SLPVAVVSMYEYYIHVNDAKRNLGAT 180 (276)
T ss_pred HHHHhhcchhhhccccccchhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HHHHHHHhhhhheeeccHhHhccCce
Confidence 33332222222111 11222211122 112222233322345555443 3345556666555421112122111
Q ss_pred HHHHHHHHHHHHhhcHHHHhhc-----------ccccccchHHHHHHHHHHHHHHHHHhh
Q 024361 205 ATGFYLLAKFEAAADRKIYSKT-----------HYIISGHSLEHLCSAIVPVLLSVMLMY 253 (268)
Q Consensus 205 a~~~y~lAk~~e~~D~~ic~~~-----------~~~isGHsLwHL~aA~~~~~l~~~l~~ 253 (268)
+......+..+|..|+..|+-. |....+|++||++++++.|....++..
T Consensus 181 ~~i~~~v~~~~w~~D~~~c~f~~~~~~~l~~~~gi~l~~~a~Whv~s~~~~y~~~~~~~~ 240 (276)
T KOG2329|consen 181 GVILWLVGFIFWFLDRLLCSFWLRLRRYLALPLGILLELHAWWHVLTSIGSYRTITFLLY 240 (276)
T ss_pred eeeehhhhcchhhhhHHHHHHHHHhhhhhccHHHHHHHHHHHHhheecCChhHHHHHHHH
Confidence 5677888999999999999873 222578999999999999888777544
No 3
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=98.08 E-value=0.00022 Score=62.39 Aligned_cols=193 Identities=12% Similarity=0.028 Sum_probs=107.9
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCC-------CcchhhhhhHH
Q 024361 54 PNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPD-------DDRVMWDTLPM 126 (268)
Q Consensus 54 pn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~-------~~~llwDrLPM 126 (268)
-|.+|+.|++.=.+..+............+...+.+.+...++..+....-..|+.||+... +..+-.|...+
T Consensus 5 NEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI 84 (222)
T PF03006_consen 5 NETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGI 84 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhh
Confidence 38999999985444444443332222111100224567888999999999999999999333 23466799998
Q ss_pred HHHHHHHHHHHHHHHh----hhhhH-HHHHHHHHHHHHHHHHhHhhcC------ChhHHHHHHHHHHHHHHH-HHHhcCC
Q 024361 127 MIAYASLFSSLLAERV----DAKIG-LSCLIALVSVSFLSMIYARTFN------DFRLCMTFQLIPTIAIPV-VTFLFPP 194 (268)
Q Consensus 127 ~ia~~~l~~~~~~er~----~~r~g-~~~l~~Ll~~g~~sv~yw~~~~------dlr~y~~vQ~~p~l~i~~-~~~~~~~ 194 (268)
.+.+++-.....--.. ..+.. ......+.+.|........... ....|...-..+.+.+.- .......
T Consensus 85 ~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~ 164 (222)
T PF03006_consen 85 FLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGW 164 (222)
T ss_pred hHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccc
Confidence 8887766443333333 11222 2222222234444433333111 134455554444432232 2222211
Q ss_pred C-CcchhHHHHHHHHHHHHHHHHhhcH--HHH-hhcccccccchHHHHHHHHHHHH
Q 024361 195 K-YTHSRCWLYATGFYLLAKFEAAADR--KIY-SKTHYIISGHSLEHLCSAIVPVL 246 (268)
Q Consensus 195 ~-~~~~~~~~~a~~~y~lAk~~e~~D~--~ic-~~~~~~isGHsLwHL~aA~~~~~ 246 (268)
+ .........+..+|.+|-++-..|- ... +....+-+.|.+||++..++.++
T Consensus 165 ~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 165 GSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred cchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 1 1115667788899999999988871 111 12234458999999999988754
No 4
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=97.85 E-value=0.0022 Score=65.39 Aligned_cols=111 Identities=16% Similarity=0.145 Sum_probs=81.9
Q ss_pred CCCCcccccccccccccCcchhhHhhhhHHHHHHHHHHHHHHHhhcccc--ccccchhHH---HHHHHHHHHHHHHhhhh
Q 024361 35 FPSSRESHLFADLRNFFGVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFN--ISFRGEVWG---WALFYAGITGVAFGSAY 109 (268)
Q Consensus 35 ipq~~~yh~faD~R~~~gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~--~~~~~~~~~---~~lff~gl~~vg~GSay 109 (268)
=.||.=|++|.=.|.+++..-|-|+.||..+++.|+.=+....|++... ....|.+-. +...-.++++-|+=|+.
T Consensus 253 gn~D~CyyNf~Cs~p~~~~~~FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~ 332 (570)
T PF13965_consen 253 GNQDMCYYNFLCSHPLGGFSAFNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSAC 332 (570)
T ss_pred CCCceeeeehhhhcccccccchhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999987765555432111 111122222 34444577778999999
Q ss_pred hcCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024361 110 YHLKPDDDRVMWDTLPMMIAYASLFSSLLAERVDAK 145 (268)
Q Consensus 110 yH~~p~~~~llwDrLPM~ia~~~l~~~~~~er~~~r 145 (268)
||.=|++....-|.-=|=+.....+--+...|-+..
T Consensus 333 yh~CPn~~~fqfdt~fmyvi~~L~~lkiyq~RH~di 368 (570)
T PF13965_consen 333 YHICPNRSNFQFDTSFMYVIAGLCMLKIYQKRHPDI 368 (570)
T ss_pred hhcCcCchhhHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999998887766555555555555543
No 5
>PRK15087 hemolysin; Provisional
Probab=97.84 E-value=0.0075 Score=54.22 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=104.9
Q ss_pred cchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCC----cchhhhhhHHHH
Q 024361 53 VPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDD----DRVMWDTLPMMI 128 (268)
Q Consensus 53 Ipn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~----~~llwDrLPM~i 128 (268)
-.|..|..|++.=.+.++.|..........+.....+.....++..++.+-=.-|+.||+.++. .-.-+|...|-+
T Consensus 14 ~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~l 93 (219)
T PRK15087 14 AEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYL 93 (219)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHH
Confidence 3699999999854444666765443321111011224456778888888888889999999843 234589999888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHhHhhcCChhH-----HHHHHHHHHHHHHHHHHhcCCCCcchh
Q 024361 129 AYASLFSSLLAERVDAKIGLSC---LIALVSVSFLSMIYARTFNDFRL-----CMTFQLIPTIAIPVVTFLFPPKYTHSR 200 (268)
Q Consensus 129 a~~~l~~~~~~er~~~r~g~~~---l~~Ll~~g~~sv~yw~~~~dlr~-----y~~vQ~~p~l~i~~~~~~~~~~~~~~~ 200 (268)
.+++-..-..--......+... ...+.+.|...-..+. +.-|. |+.+=-.+++.++-+....+ ...-.
T Consensus 94 lIaGsytP~~~~~~~~~~~~~l~~~iW~~a~~Gi~~~~~~~--~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~~--~~~l~ 169 (219)
T PRK15087 94 LIAGTYTPFLLVGLDSPLARGLMIVIWSLALLGILFKLAFA--HRFKVLSLVTYLAMGWLSLIVIYQLAIKLA--IGGVT 169 (219)
T ss_pred HHHHhhHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHH
Confidence 8887665443333322333332 2223334554444342 32233 33333333333333332222 22234
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHHHHHHH
Q 024361 201 CWLYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVPVLLSV 249 (268)
Q Consensus 201 ~~~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~~~l~~ 249 (268)
.+..+..+|.++-.+=..|+ .+ .-|.+||++.-++..+-..
T Consensus 170 ~l~~GG~~Y~~G~~fY~~~~-----~p---~~H~IwH~fVl~ga~~H~~ 210 (219)
T PRK15087 170 LLAVGGVVYSLGVIFYVCKR-----IP---YNHAIWHGFVLGGSVCHFL 210 (219)
T ss_pred HHHHHhHHHHhhHHHHccCC-----CC---CchhHHHHHHHHHHHHHHH
Confidence 45566678888887766652 22 4699999999888755443
No 6
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=97.72 E-value=0.0042 Score=57.79 Aligned_cols=208 Identities=13% Similarity=0.059 Sum_probs=124.8
Q ss_pred CCCCCCCcccccccccccccCcchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhc
Q 024361 32 TPKFPSSRESHLFADLRNFFGVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYH 111 (268)
Q Consensus 32 ~p~ipq~~~yh~faD~R~~~gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH 111 (268)
.+|+|| ||-==-=+.++||-|+.-|+-.+.=+++-..|+...++.-..+.+... -|..+...-+..=+=|+.||
T Consensus 34 g~~i~Q---fhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~~~~~~~~p~~~---~~~~~~~v~~naW~wStvFH 107 (267)
T PF04080_consen 34 GEPIVQ---FHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFRRQVPRNSPMYP---YYIIYAIVSMNAWIWSTVFH 107 (267)
T ss_pred CCCccc---ccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCcC---eeehHHHHHHHHHHHHHHHH
Confidence 455554 554112245699999999998888888888888766664222211211 24444444444557899999
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH--HHh-----HhhcCChhHHHHHHHHHH
Q 024361 112 LKPDDDRVMWDTLPMMIAYASLFSSLLAERVDA--KIGLSCLIALVSVSFLS--MIY-----ARTFNDFRLCMTFQLIPT 182 (268)
Q Consensus 112 ~~p~~~~llwDrLPM~ia~~~l~~~~~~er~~~--r~g~~~l~~Ll~~g~~s--v~y-----w~~~~dlr~y~~vQ~~p~ 182 (268)
+.=...|--.|=-.=....+.-++..+.+-.+. +.....++...+.++.+ +.| |-++=|++..+.+-..-.
T Consensus 108 ~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~ 187 (267)
T PF04080_consen 108 TRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFTALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQN 187 (267)
T ss_pred HhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHH
Confidence 999999999998776666666666666665544 33333333333322222 222 233335666666554433
Q ss_pred HHHHHHHHhcCCCCcch-------hHHH--HHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHHHHHH
Q 024361 183 IAIPVVTFLFPPKYTHS-------RCWL--YATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVPVLLS 248 (268)
Q Consensus 183 l~i~~~~~~~~~~~~~~-------~~~~--~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~~~l~ 248 (268)
+.-........+++.+. .... .....-.+|..+|..|-+=.. .++-.|++||+.+.--+++..
T Consensus 188 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DFpP~~---~~lDAHALWHl~Tip~~~~wy 259 (267)
T PF04080_consen 188 ILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDFPPIF---WLLDAHALWHLATIPPTYLWY 259 (267)
T ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccCccc---ccchHHHHHHHHHhhHHHHHH
Confidence 32222222222333322 2222 567788899999999986432 358899999999987776543
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=97.72 E-value=0.0051 Score=54.51 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=103.6
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCCc-----chhhhhhHHHHH
Q 024361 55 NTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDDD-----RVMWDTLPMMIA 129 (268)
Q Consensus 55 n~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~~-----~llwDrLPM~ia 129 (268)
|..|+.|.+.=.+.++.|..........+ ....+...+.++.++...-=..|+.||+.+.++ .+-+|...|.+.
T Consensus 2 e~~N~~tH~~g~~~~~~~~~~l~~~~~~~-~~~~~~~~~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~l 80 (204)
T TIGR01065 2 EIANAITHGIGAVLSIIALALLVIYSWDH-GGAVAVLGFSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVL 80 (204)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHH
Confidence 78899999844444555443332221111 123456788899999999999999999999533 244699999888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHhHhhcCChhH-----HHHHHHHHHHHHHHHHHhcCCCCcchhH
Q 024361 130 YASLFSSLLAERVDAKIGLSCLI---ALVSVSFLSMIYARTFNDFRL-----CMTFQLIPTIAIPVVTFLFPPKYTHSRC 201 (268)
Q Consensus 130 ~~~l~~~~~~er~~~r~g~~~l~---~Ll~~g~~sv~yw~~~~dlr~-----y~~vQ~~p~l~i~~~~~~~~~~~~~~~~ 201 (268)
+++-..-..-.......+..... .+.+.|...-..+ .+.-|+ |...-..++..+|-+.... +...-..
T Consensus 81 IaGsytP~~~~~~~~~~~~~~~~~iw~la~~gi~~~~~~--~~~~r~~r~~~y~~~G~~~v~~~~~~~~~~--~~~~~~~ 156 (204)
T TIGR01065 81 IAGTYTPFLLLALPGPLGWTVLWIIWGLAIGGIIYKLFF--HKRPRWLSLFLYLIMGWLVVLVIKPLYHNL--PGAGFSL 156 (204)
T ss_pred HHHhhHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHc--cCCCchhHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHH
Confidence 87766655544444334433332 2233333322222 222233 4333333433444332111 1122344
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHhhccccccc-chHHHHHHHHHHHHHH
Q 024361 202 WLYATGFYLLAKFEAAADRKIYSKTHYIISG-HSLEHLCSAIVPVLLS 248 (268)
Q Consensus 202 ~~~a~~~y~lAk~~e~~D~~ic~~~~~~isG-HsLwHL~aA~~~~~l~ 248 (268)
...+..+|.++-.+=..|.+- .. . |.+||++.-+|..+-.
T Consensus 157 l~~gg~~Y~~G~~fY~~~~p~--~~-----~~H~iwH~fV~~g~~~h~ 197 (204)
T TIGR01065 157 LAAGGLLYTVGAIFYALKWPI--PF-----TYHAIWHLFVLGASACHF 197 (204)
T ss_pred HHHHhHHHHcchHheeecCCC--CC-----CcChHHHHHHHHHHHHHH
Confidence 556677899998887776332 11 2 9999999988875433
No 8
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=96.59 E-value=0.12 Score=48.84 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=108.7
Q ss_pred CCCCCCcccc-cccccccccCcchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhc
Q 024361 33 PKFPSSRESH-LFADLRNFFGVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYH 111 (268)
Q Consensus 33 p~ipq~~~yh-~faD~R~~~gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH 111 (268)
.|||| || .-.=+|- +||.|+.-|+=...=++.=.-|+..-||....+.+..-| .-|-+...--+..=+-|+.||
T Consensus 85 ~pi~q---fhGKWpFlrv-lGiQEp~SviFS~lNl~~h~~g~~~~r~~~~~~~~~r~~-~l~~I~a~i~mnawiwSsvFH 159 (319)
T KOG2970|consen 85 GPIPQ---FHGKWPFLRV-LGIQEPFSVIFSFLNLITHYKGLVKFRRPKKPNRPTRYE-RLWLIYAYIGMNAWIWSSVFH 159 (319)
T ss_pred Ccccc---ccCCcchhhh-hhccchHHHHHHHHHHHHHHHHHhheecccCCCCcchhc-cchhhHHHHHHHHHHHHHhhh
Confidence 45665 66 2333454 999999998766655556666665444433333222212 223444444555668899999
Q ss_pred CCCCCcchhhhhhHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--Hh-----HhhcCChhHHHHHHHHHH
Q 024361 112 LKPDDDRVMWDTLPMMIAY--ASLFSSLLAERVDAKIGLSCLIALVSVSFLSM--IY-----ARTFNDFRLCMTFQLIPT 182 (268)
Q Consensus 112 ~~p~~~~llwDrLPM~ia~--~~l~~~~~~er~~~r~g~~~l~~Ll~~g~~sv--~y-----w~~~~dlr~y~~vQ~~p~ 182 (268)
..=.+-|--.|=-.=.... ..+..++-.-++...++.+......++.+.+. .| +-++-|.+-.+.+-.+-.
T Consensus 160 ~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq~ 239 (319)
T KOG2970|consen 160 IRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFDYGYNMIVCVAIGVIQL 239 (319)
T ss_pred hcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecccccceeeehhhHHHHH
Confidence 9988888888865433333 33333333333333334444444444333222 22 222224544444332222
Q ss_pred HHHHHHHHh-cCCCCcchhH--HHHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHH
Q 024361 183 IAIPVVTFL-FPPKYTHSRC--WLYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVP 244 (268)
Q Consensus 183 l~i~~~~~~-~~~~~~~~~~--~~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~ 244 (268)
+...... ..+++.+.+. ...-+.++.+|...|..|-+=++.. +--|++||+++---+
T Consensus 240 --vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~---iDAHALWHlaTIplt 299 (319)
T KOG2970|consen 240 --VLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWL---IDAHALWHLATIPLT 299 (319)
T ss_pred --HHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhh---cchHHHHHhhcCccH
Confidence 2222222 2233333222 3334456799999999998776654 789999999876444
No 9
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=96.34 E-value=0.2 Score=45.63 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=109.8
Q ss_pred chhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCC-----cchhhhhhHHHH
Q 024361 54 PNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDD-----DRVMWDTLPMMI 128 (268)
Q Consensus 54 pn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~-----~~llwDrLPM~i 128 (268)
.|..|..|.+.=.+.++.++....-.... .....+.....++-.++..--.-|..||..|.. .-.-.|...|.+
T Consensus 20 ~e~~n~~tHlvGail~i~~l~~l~~~a~~-~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~v 98 (226)
T COG1272 20 EEIANAITHLIGAILAIVGLVLLLVYALI-TGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYV 98 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHH
Confidence 57889999986666666666433321111 112344567888999999999999999999974 345678888888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHhHhhcCC---hhHHHHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 024361 129 AYASLFSSLLAERVDAKIGLSCL---IALVSVSFLSMIYARTFND---FRLCMTFQLIPTIAIPVVTFLFPPKYTHSRCW 202 (268)
Q Consensus 129 a~~~l~~~~~~er~~~r~g~~~l---~~Ll~~g~~sv~yw~~~~d---lr~y~~vQ~~p~l~i~~~~~~~~~~~~~~~~~ 202 (268)
.+++-.--+.-.-.....+...+ ..+.++|..--..+....+ ...|+.+=-..++.++-+....++ ..-..+
T Consensus 99 LIAgSyTP~~l~~l~~~~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~--~~~~~l 176 (226)
T COG1272 99 LIAGSYTPFLLVGLYGPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL--IGLVLL 176 (226)
T ss_pred HHHHhhHHHhHHHhccchHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhCch--HHHHHH
Confidence 77764433222222222333333 3333344333333332221 444444443333444444444433 334556
Q ss_pred HHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHHHHHHHH
Q 024361 203 LYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVPVLLSVM 250 (268)
Q Consensus 203 ~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~~~l~~~ 250 (268)
.++..+|.++-.+=..|. ..+-.-|.+||++.-.|..+-..+
T Consensus 177 ~~GGv~YsvG~ifY~~~~------~~~~~~H~iwH~fVv~ga~~Hf~a 218 (226)
T COG1272 177 ALGGVLYSVGAIFYVLRI------DRIPYSHAIWHLFVVGGAACHFIA 218 (226)
T ss_pred HHHhHHheeeeEEEEEee------ccCCchHHHHHHHHHHHHHHHHHH
Confidence 667788888776655554 244689999999999988655444
No 10
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=96.07 E-value=0.17 Score=44.56 Aligned_cols=63 Identities=25% Similarity=0.224 Sum_probs=36.6
Q ss_pred hHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCC-CC-----cchhhhhhHHHHHH
Q 024361 57 LNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKP-DD-----DRVMWDTLPMMIAY 130 (268)
Q Consensus 57 ~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p-~~-----~~llwDrLPM~ia~ 130 (268)
.=++||++|+-.-.+. .|++.. -| ..--..+++-|+.||.-= .+ -..-||||-=.-++
T Consensus 10 ~l~lSnl~~lP~i~~a----~rr~~~-----~E-------a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~ 73 (186)
T PF12036_consen 10 LLTLSNLAFLPTIYVA----VRRRYH-----FE-------AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFI 73 (186)
T ss_pred HHHHHHHHHHHHHHHH----HHHhhH-----HH-------HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHH
Confidence 4589999999776433 333211 11 122235678899999974 22 34557777655444
Q ss_pred HHHHH
Q 024361 131 ASLFS 135 (268)
Q Consensus 131 ~~l~~ 135 (268)
.+..+
T Consensus 74 ~s~~~ 78 (186)
T PF12036_consen 74 GSFLS 78 (186)
T ss_pred HHHHH
Confidence 44433
No 11
>PF14325 DUF4383: Domain of unknown function (DUF4383)
Probab=91.22 E-value=3.3 Score=34.36 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC-CcccccccccccccCc-chhhHhhhhHHHHHHHHHHHHHHHhhccccccccchh
Q 024361 13 KRTRIWAGAFLCLLFFMLATPKFPS-SRESHLFADLRNFFGV-PNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEV 90 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~p~ipq-~~~yh~faD~R~~~gI-pn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~ 90 (268)
|+..+..+.+.+.+-.+=+.|.+.+ .++..-..+++..+|+ + .|.+.|+.=++.|+.|+...++.+.. +.--
T Consensus 2 q~~al~~G~~fl~~GilGFiPg~t~~~~~~~~~~~~~~lfGlF~--vn~lhn~vHl~~Gv~gl~aa~~~~~A----r~~~ 75 (125)
T PF14325_consen 2 QYAALVIGVVFLLLGILGFIPGFTTNYDEFAGHHSGGYLFGLFA--VNPLHNIVHLLFGVAGLAAARSPRAA----RAFL 75 (125)
T ss_pred hhHHHHHHHHHHHHHHHhCcCCCCCcccccccCCCCCeEEEeee--ccHHHHHHHHHHHHHHHHHHhchHHH----HHHH
Confidence 3344433344444434445577665 3334555688889997 6 89999999999999998766543211 1111
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024361 91 WGWALFYAGITGVAFGSA 108 (268)
Q Consensus 91 ~~~~lff~gl~~vg~GSa 108 (268)
+...+.|.++...|+...
T Consensus 76 ~~~g~~y~~l~i~Gl~~~ 93 (125)
T PF14325_consen 76 RLFGVVYLALGIYGLFPG 93 (125)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 334455666555555433
No 12
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=90.91 E-value=9.2 Score=35.88 Aligned_cols=196 Identities=21% Similarity=0.218 Sum_probs=102.4
Q ss_pred cccc-ccccccccCcchhhHhhhhHHHHHHHHHHHHHHHhhccccccccch--hHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 024361 40 ESHL-FADLRNFFGVPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGE--VWGWALFYAGITGVAFGSAYYHLKPDD 116 (268)
Q Consensus 40 ~yh~-faD~R~~~gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~--~~~~~lff~gl~~vg~GSayyH~~p~~ 116 (268)
+||. .-=||- +|+.||..++=..-=++.--.|+..-+|.-... ...++ -+.|+ ++|+. .=+-|..||..-+-
T Consensus 86 q~hGkW~F~rV-lG~qEfFS~~FS~~Nfi~hy~gfh~m~r~i~~e-~~~~R~~~l~wv--~igml-Awi~SsvFHird~~ 160 (319)
T COG5237 86 QRHGKWGFQRV-LGMQEFFSALFSFMNFITHYIGFHRMLRKILRE-TRLGRLYYLQWV--YIGML-AWISSSVFHIRDNT 160 (319)
T ss_pred hhcCccceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccceEEeeHH--HHHHH-HHHHHhheeeeccc
Confidence 3443 333554 899999988876665666667776544421000 01111 12342 44543 34679999998777
Q ss_pred cchhhhhhHHHHHHHHHHHHHH--HHHhhhhh-HHHHHHHH--HHHHHHHHHh-------HhhcCChhH---HHHHHHHH
Q 024361 117 DRVMWDTLPMMIAYASLFSSLL--AERVDAKI-GLSCLIAL--VSVSFLSMIY-------ARTFNDFRL---CMTFQLIP 181 (268)
Q Consensus 117 ~~llwDrLPM~ia~~~l~~~~~--~er~~~r~-g~~~l~~L--l~~g~~sv~y-------w~~~~dlr~---y~~vQ~~p 181 (268)
-+-=.|----......=++.++ ..++.+-+ ++..-.|+ .++++.+... |-+.-|.+. ..+.|.+
T Consensus 161 iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i~fdY~YNm~~n~aigv~q~i- 239 (319)
T COG5237 161 ITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNIEFDYVYNMISNCAIGVTQTI- 239 (319)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhccceeeehhhhcchHHHHHHH-
Confidence 6766665433332222223333 33333333 23333333 2333322222 222224443 3334421
Q ss_pred HHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHHHH
Q 024361 182 TIAIPVVTFLFPPKYTH--SRCWLYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVPVL 246 (268)
Q Consensus 182 ~l~i~~~~~~~~~~~~~--~~~~~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~~~ 246 (268)
+.-...+.-.++-++ .|....-...+.+|...|..|-+=|+.+ +-.|++|||++-.-.+.
T Consensus 240 --L~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~l---IDaHAlWHL~t~~~t~~ 301 (319)
T COG5237 240 --LSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYL---IDAHALWHLITCISTPF 301 (319)
T ss_pred --HHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHH---hhHHHHhHhhhccchHH
Confidence 111112221122122 3445666778889999999998877765 78999999999877543
No 13
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=78.73 E-value=0.81 Score=42.24 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=95.3
Q ss_pred cchhhHhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHhhhhhcCCCCCc------------chh
Q 024361 53 VPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISFRGEVWGWALFYAGITGVAFGSAYYHLKPDDD------------RVM 120 (268)
Q Consensus 53 Ipn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~~~~~~~~~lff~gl~~vg~GSayyH~~p~~~------------~ll 120 (268)
+.+..|+.|...-++.++.|.....+....+ ...-..|-|.. |+.+.-.-|-.||.----. --+
T Consensus 84 ~EhvAN~~tHai~I~PaIl~~~~l~~~s~~d-~q~i~awIYG~---~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~ 159 (298)
T KOG4243|consen 84 YEHVANCYTHAIWIVPAILGSALLHRLSDDD-WQKITAWIYGM---GLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHM 159 (298)
T ss_pred HHHHHhhHhhHhhhhHHHHHHHHHHHhhhhH-HHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999987665432111 00111233333 3444445688888643222 236
Q ss_pred hhhhHHHHHHHHHHH--HHHHHHhhhhhH-HHHHHHHHHHHHHHHHhHhhcCChhHHHHHH---HHHHHHHHHHHHhcCC
Q 024361 121 WDTLPMMIAYASLFS--SLLAERVDAKIG-LSCLIALVSVSFLSMIYARTFNDFRLCMTFQ---LIPTIAIPVVTFLFPP 194 (268)
Q Consensus 121 wDrLPM~ia~~~l~~--~~~~er~~~r~g-~~~l~~Ll~~g~~sv~yw~~~~dlr~y~~vQ---~~p~l~i~~~~~~~~~ 194 (268)
.||.-|=+++++--. ..++|--....- ++....+...|. .|-.. --.-|=.++ |+.+-.-|.+....-.
T Consensus 160 cDRa~IY~FIAaSY~PWLtLr~~g~~~~~m~W~IWlmA~~Gi---~Yq~~--fHErYK~lEt~~Ylvmg~gPalvv~sm~ 234 (298)
T KOG4243|consen 160 CDRAVIYFFIAASYAPWLTLRELGPLASHMRWFIWLMAAGGI---IYQFL--FHERYKVLETFFYLVMGFGPALVVTSMN 234 (298)
T ss_pred hhhhHhhhhhhhcccccccHHhhCcHHHHHHHHHHHHHhcch---hhhhh--HHHHHHHHHHHHHHHHhcCceEEEEEeC
Confidence 788766555544332 222221111111 233333333332 33211 112233333 2222222333333334
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHH----HHHHHHHh
Q 024361 195 KYTHSRCWLYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVP----VLLSVMLM 252 (268)
Q Consensus 195 ~~~~~~~~~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~----~~l~~~l~ 252 (268)
..+.-..+..+.++|.++.+|=-.|..| .=.|+.|||..++++ |-+...|.
T Consensus 235 ~~~Gl~~l~~GG~~Y~lGvvFFK~DG~i-------pfAHAIWHLFV~l~A~cHyYAi~~~Ly 289 (298)
T KOG4243|consen 235 NTDGLQELATGGLFYCLGVVFFKSDGII-------PFAHAIWHLFVALAAGCHYYAIWKYLY 289 (298)
T ss_pred CchhHHHHHhCCEEEEEEEEEEecCCce-------ehHHHHHHHHHHHHcchhHHHHHHHHh
Confidence 4333344556778899888877777644 568999999999986 44544444
No 14
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=69.68 E-value=3.3 Score=30.39 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.0
Q ss_pred CCCCCccccccc-ccccccCcch
Q 024361 34 KFPSSRESHLFA-DLRNFFGVPN 55 (268)
Q Consensus 34 ~ipq~~~yh~fa-D~R~~~gIpn 55 (268)
-..|...-|+++ |.|-.+|.|.
T Consensus 37 G~~q~~~vHe~~HD~RH~~gFPC 59 (60)
T TIGR02459 37 GFSHIDAVHNAAHDTRHSAAFPC 59 (60)
T ss_pred hhccHHHHHHHHHHHHHhcCCCC
Confidence 377888889999 9999999985
No 15
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=60.74 E-value=1.1e+02 Score=26.28 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred CcchhhHhhhhHHHHHHHHHHHHHHHhhcc--ccccccchh-HHHH-HHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHH
Q 024361 52 GVPNTLNVLSNFPFLIAGVMGFVLTLQGIF--FNISFRGEV-WGWA-LFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMM 127 (268)
Q Consensus 52 gIpn~~NvlSNl~Fl~~gl~Gl~~~~r~~~--~~~~~~~~~-~~~~-lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ 127 (268)
...+..|++.|+.|++..++|++.+.|++. .+.+-+... ..+. .....+...++-....+..-+++.-.+|-+..+
T Consensus 42 ~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Da~~~~ 121 (181)
T PF04973_consen 42 QAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLSKKQWILLLIGILIGTAIFGFILKFLTDSPFPWLDALTTV 121 (181)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 355678899999999999999987775321 111111111 1122 222222222222333443336778899999988
Q ss_pred HHHHHHHHHH
Q 024361 128 IAYASLFSSL 137 (268)
Q Consensus 128 ia~~~l~~~~ 137 (268)
+++.+.+...
T Consensus 122 ~siva~~l~~ 131 (181)
T PF04973_consen 122 LSIVAQWLMA 131 (181)
T ss_pred HHHHHHHHHH
Confidence 8877666543
No 16
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=57.69 E-value=7.5 Score=27.90 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=18.9
Q ss_pred CCCCCccccccc-ccccccCcch
Q 024361 34 KFPSSRESHLFA-DLRNFFGVPN 55 (268)
Q Consensus 34 ~ipq~~~yh~fa-D~R~~~gIpn 55 (268)
-..|.+.-|+.+ |.|-..|+|.
T Consensus 31 gf~~~~~~HdaaHD~RH~~gfPC 53 (54)
T PF09489_consen 31 GFSQAPAVHDAAHDTRHAAGFPC 53 (54)
T ss_pred HhcchHHHHHHhhhhHHhcCCCC
Confidence 367888899999 9999999985
No 17
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=56.55 E-value=57 Score=30.66 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcHH------HHhhcccccccchHHHHHHHHHHHHHHH
Q 024361 200 RCWLYATGFYLLAKFEAAADRK------IYSKTHYIISGHSLEHLCSAIVPVLLSV 249 (268)
Q Consensus 200 ~~~~~a~~~y~lAk~~e~~D~~------ic~~~~~~isGHsLwHL~aA~~~~~l~~ 249 (268)
.+......+|++|-++=..+-| .|+..+ .+|-++|++.-++.+.-..
T Consensus 212 ~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G---~SHQifHv~vv~~a~~~~~ 264 (286)
T KOG0748|consen 212 GYVILMAVLYLLGALFYATRIPERWFPGKFDIWG---HSHQIFHVLVVLAALFHLE 264 (286)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCcccCCCccceeC---ChhHHHHHHHHHHHHHHHH
Confidence 3444555566665555333321 233333 7899999999999865433
No 18
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=55.49 E-value=2.3e+02 Score=28.48 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcccccccccccccCcchh---------h-HhhhhHHHHHHHHHHHHHHHhh-ccccccc-
Q 024361 19 AGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNT---------L-NVLSNFPFLIAGVMGFVLTLQG-IFFNISF- 86 (268)
Q Consensus 19 ~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~---------~-NvlSNl~Fl~~gl~Gl~~~~r~-~~~~~~~- 86 (268)
|..++.+.+++++.--.|-++.||+|-+++-=++++++ . |.+=-+.|+++| + -..|+ -..+.++
T Consensus 25 GilLl~a~~~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~sl~~wINDgLMaiFFf~VG---L-EIKrE~~~GeLs~~ 100 (438)
T PRK14856 25 GIFLFLNAVLAMVVANSFLKESYFALWHTPFGFQIGDFFIGFSLHNWIDDVLMALFFLMIG---L-EIKRELLFGELSSF 100 (438)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHcCccccccccccCCCCHHHHHHHHHHHHHHHHHH---H-HHHHHHhcccCCCh
Confidence 33444444555556667777789999998865555533 2 233446777776 3 23333 1223233
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHH
Q 024361 87 RGEVWGWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS---VSFLS 161 (268)
Q Consensus 87 ~~~~~~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~---~g~~s 161 (268)
+...+|-..-..|++.=+. .|+=...++...--=-.||+ ++|+.-...+++.|+.... +..+.++.. .|...
T Consensus 101 rka~lPi~AAlGGmivPAl--IY~~~n~~~~~~~GWgIPmATDIAFAlgvLallG~rvP~~L-rvFLlaLAIvDDlgAI~ 177 (438)
T PRK14856 101 KKASFPVIAALGGMIAPGL--IYFFLNADTPSQHGFGIPMATDIAFALGVIMLLGKRVPTAL-KVFLITLAVADDLGAIV 177 (438)
T ss_pred HHHHHHHHHHHhccHHHHH--HHhheecCCCccCccccccHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHhhhHh
Confidence 2222343333444433221 22222222222222246776 5666666677777775432 344444444 66666
Q ss_pred HHhHhhcCChhHHHHHH
Q 024361 162 MIYARTFNDFRLCMTFQ 178 (268)
Q Consensus 162 v~yw~~~~dlr~y~~vQ 178 (268)
+.--.|++++.+..+.-
T Consensus 178 VIAlFYt~~i~~~~L~~ 194 (438)
T PRK14856 178 VIALFYTTNLKFAWLLG 194 (438)
T ss_pred heeeecCCCCcHHHHHH
Confidence 66677788876665544
No 19
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=55.09 E-value=2.2e+02 Score=28.16 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcccccccccccccCcchhh----------HhhhhHHHHHHHHHHHHHHHhh-cc
Q 024361 13 KRTRIWAGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNTL----------NVLSNFPFLIAGVMGFVLTLQG-IF 81 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~~----------NvlSNl~Fl~~gl~Gl~~~~r~-~~ 81 (268)
|+...-|..++.+.++++..--.|-++.||+|-+.+--+|++++- |.+=-+.|+++| + -..|+ -.
T Consensus 10 ~~e~~~gilLl~a~v~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~sl~~wiNDgLMaiFFf~vG---L-EiKrE~~~ 85 (389)
T PRK09560 10 KSEAAGGILLMAAAALAMIVANSPLSEGYFSFLHTPVAIQIGAFSIGKSLLHWINDGLMAVFFLLVG---L-EIKRELLE 85 (389)
T ss_pred hcccHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCcceeeccccccCCCHHHHHHHHHHHHHHHHHH---H-HHHHHHhc
Confidence 444444444444455555555677778899999987666666442 233346777776 3 23333 12
Q ss_pred ccccc-cchhHHHHHHHHHHHHHHHhhhhhcCCCCCc-chhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Q 024361 82 FNISF-RGEVWGWALFYAGITGVAFGSAYYHLKPDDD-RVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS- 156 (268)
Q Consensus 82 ~~~~~-~~~~~~~~lff~gl~~vg~GSayyH~~p~~~-~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~- 156 (268)
.+.++ +...+|-.--..|+..=+ ..|+=.+..+. ..--=-.||+ ++|+.-...++..|+.... +..+.+|..
T Consensus 86 GeLs~~r~a~lPi~AAlGGmivPA--lIy~~~n~g~~~~~~GWgIPmATDIAFAlgvL~llG~rvP~~L-r~FLlaLAIv 162 (389)
T PRK09560 86 GQLSSWQQRILPAIAAVGGMVVPA--LIYAAFNYNNPETLRGWAIPAATDIAFALGVLALLGKRVPVSL-KVFLLALAII 162 (389)
T ss_pred CCCCChHHHHHHHHHHHhchHHHH--HHHheeecCCCcccCccccccHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHH
Confidence 33333 222234333344443322 12332222211 1111135776 5666666667888876532 334444444
Q ss_pred --HHHHHHHhHhhcCChhHHHHH
Q 024361 157 --VSFLSMIYARTFNDFRLCMTF 177 (268)
Q Consensus 157 --~g~~sv~yw~~~~dlr~y~~v 177 (268)
.|...+.--.|++++.+..+.
T Consensus 163 DDlgAI~VIA~FYt~~i~~~~L~ 185 (389)
T PRK09560 163 DDLGAIVIIALFYTSDLSLPALA 185 (389)
T ss_pred HhhhhHhheeeecCCCCCHHHHH
Confidence 555566666777776665553
No 20
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=54.90 E-value=2.3e+02 Score=28.14 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcccccccccccccCcchh-----h-----HhhhhHHHHHHHHHHHHHHHhh-cc
Q 024361 13 KRTRIWAGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNT-----L-----NVLSNFPFLIAGVMGFVLTLQG-IF 81 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~-----~-----NvlSNl~Fl~~gl~Gl~~~~r~-~~ 81 (268)
|+...-|..++++.++++..---|-++.||+|-+++--+|++++ + |.+=-+.|+++| + -.+|+ -.
T Consensus 10 ~~e~~~gilLl~a~v~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~~l~~wiNDgLMaiFFf~vG---L-EiKrE~~~ 85 (388)
T PRK09561 10 SSEASGGILLIIAAALAMLMANSPTSGWYQDFLETPVQLRVGALEINKPLLLWINDGLMAVFFLLIG---L-EVKRELLE 85 (388)
T ss_pred hcchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCcceeecccccCCCcHHHHHHhhHHHHHHHHHH---H-HHHHHHHc
Confidence 33333444444444555555567777889999998765555543 2 334446777776 3 23333 12
Q ss_pred ccccc-cchhHHHHHHHHHHHHHHHhhhhh-cCCCCCcchhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Q 024361 82 FNISF-RGEVWGWALFYAGITGVAFGSAYY-HLKPDDDRVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS- 156 (268)
Q Consensus 82 ~~~~~-~~~~~~~~lff~gl~~vg~GSayy-H~~p~~~~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~- 156 (268)
.+.++ +...+|-..-..|+..=+.==..+ |-+|....-. -.||+ ++|+.-...++..|+.... +..+.++..
T Consensus 86 GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~~~~~~~~GW--aIP~ATDIAFalgvlallG~rvP~~L-rvFLlaLAIv 162 (388)
T PRK09561 86 GSLASRRQAALPVIAAIGGMLVPALIYLLFNYADPVTREGW--AIPAATDIAFALGVLALLGSRVPVAL-KIFLLALAII 162 (388)
T ss_pred CCCCChHHHHHHHHHHHhchHHHHHHHhheecCCCcccCcc--ccccHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHH
Confidence 22233 222233333344443322211111 1122211111 25666 5666666677888876532 333334433
Q ss_pred --HHHHHHHhHhhcCChhHHHH
Q 024361 157 --VSFLSMIYARTFNDFRLCMT 176 (268)
Q Consensus 157 --~g~~sv~yw~~~~dlr~y~~ 176 (268)
.|...+.--.|++++....+
T Consensus 163 DDlgAI~VIAlFYt~~i~~~~L 184 (388)
T PRK09561 163 DDLGAIVIIALFYTSDLSMVSL 184 (388)
T ss_pred HHhhhHhheeeecCCCccHHHH
Confidence 55555555566666554443
No 21
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=46.60 E-value=2e+02 Score=25.10 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred cchhhHhhhhHHHHHHHHHHHHHHHhhccccccc-----cchh-HHHH--HHHHHHHHHHHhhhhhcCCCCCcchhhhhh
Q 024361 53 VPNTLNVLSNFPFLIAGVMGFVLTLQGIFFNISF-----RGEV-WGWA--LFYAGITGVAFGSAYYHLKPDDDRVMWDTL 124 (268)
Q Consensus 53 Ipn~~NvlSNl~Fl~~gl~Gl~~~~r~~~~~~~~-----~~~~-~~~~--lff~gl~~vg~GSayyH~~p~~~~llwDrL 124 (268)
..+..|+..|+.|++..++|++.+.|++..+... +... ..+. +....+..+++|-.+-| .++..-.+|-+
T Consensus 44 ~~lYgd~~lq~~y~~~~~yGw~~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~p~~Da~ 121 (189)
T TIGR01528 44 TGLYAEVLLQLFFVIANIYGLFAWKKNSQQEENGVTSGLKKLKGKGWTIILSTSVVLTVVIALILKF--IGDNFPWLDSI 121 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeEeecCCcccchhhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH--cCCCchHHHHH
Confidence 3456789999999999999987665432111001 1101 1122 22222222333333333 45677788988
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhHhhc
Q 024361 125 PMMIAYASLFSSLLAERVDAKIGLSCLIALVSVSFLSMIYARTF 168 (268)
Q Consensus 125 PM~ia~~~l~~~~~~er~~~r~g~~~l~~Ll~~g~~sv~yw~~~ 168 (268)
-.++++.+... ..+|..+.+-.. ++.-+.++.-|...
T Consensus 122 ~t~~Siva~~l--~~~k~~E~W~~W-----iivdii~i~L~~~~ 158 (189)
T TIGR01528 122 TFVIGIVAQIL--MVRRYRENWILW-----LLSNVVSIILWFLA 158 (189)
T ss_pred HHHHHHHHHHH--HHHHHHhhHHHH-----HHHHHHHHHHHHHH
Confidence 88777665543 234443433332 23444455555443
No 22
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=46.35 E-value=3.2e+02 Score=27.37 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCcccccccccccccCcchh---------h-HhhhhHHHHHHHHHHHHHHHhh-cc
Q 024361 13 KRTRIWAGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNT---------L-NVLSNFPFLIAGVMGFVLTLQG-IF 81 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~---------~-NvlSNl~Fl~~gl~Gl~~~~r~-~~ 81 (268)
|+...-|..++.+.++++..--.|-++.||+|-+.+--+++.++ . |.+=-+.|+++| + -..|+ -.
T Consensus 13 ~~e~~~gilLl~a~~~Ali~ANs~~~~~Y~~~~~~~~~~~~~~~~~~~~l~~wiNDgLMaiFFf~vG---L-EiKrE~~~ 88 (423)
T PRK14853 13 RKETVGGALLLVAAVAALIWANSPWGDSYFALRDFKLGPEPGGLHLSLSLGTWAADGLLAIFFFVVG---L-ELKREFVA 88 (423)
T ss_pred HcchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCccccccccccCCCCHHHHHHHhhHHHHHHHHH---H-HHhHHHhc
Confidence 33443444444455555555566778889999987755544422 2 234446777776 3 23333 12
Q ss_pred ccccc-cchhHHHHHHHHHHHHHHHhhhhhcCCCCC-cchhhhhhHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Q 024361 82 FNISF-RGEVWGWALFYAGITGVAFGSAYYHLKPDD-DRVMWDTLPMMI--AYASLFSSLLAERVDAKIGLSCLIALVS- 156 (268)
Q Consensus 82 ~~~~~-~~~~~~~~lff~gl~~vg~GSayyH~~p~~-~~llwDrLPM~i--a~~~l~~~~~~er~~~r~g~~~l~~Ll~- 156 (268)
.+.++ +...+|-..-..|+..=+ ..|+=....+ ...--=-.||+- +|+.-.-..+..|+..+. +..+..+..
T Consensus 89 GeL~~~~~a~lP~~aAlGGm~vPa--liy~~~n~~~~~~~~GW~Ip~ATDIAFalgvLallG~rvp~~l-~~FLlaLAIv 165 (423)
T PRK14853 89 GDLRDPSRAALPVAAALGGMIVPA--LIYVAVNLAGGGALRGWAIPTATDIAFALAVLAVIGTHLPSAL-RTFLLTLAVV 165 (423)
T ss_pred cchhhHHHHHHHHHHHHHhHHHHH--HHHHHHhCCchhhhhhhhhhhhhHHHHHHHHHHHhccccCcHH-HHHHHHHHHH
Confidence 22222 122234334444444322 1222122111 111111356654 555555555566665544 334444444
Q ss_pred --HHHHHHHhHhhcCChhHHHHHH
Q 024361 157 --VSFLSMIYARTFNDFRLCMTFQ 178 (268)
Q Consensus 157 --~g~~sv~yw~~~~dlr~y~~vQ 178 (268)
.+...+.-..|++++.+..+.-
T Consensus 166 DDl~AIiVIAlfYt~~i~~~~L~~ 189 (423)
T PRK14853 166 DDLLAITVIAVFYTSELNLEALLL 189 (423)
T ss_pred HHHHHHHhhheccCCCCCHHHHHH
Confidence 5555555556677776666544
No 23
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=45.73 E-value=1.7e+02 Score=24.14 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=33.7
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHHHhhcHHHHhhcccccccchHHHHHHHHHHHHHHHHHhhc
Q 024361 191 LFPPKYTHSRCWLYATGFYLLAKFEAAADRKIYSKTHYIISGHSLEHLCSAIVPVLLSVMLMYR 254 (268)
Q Consensus 191 ~~~~~~~~~~~~~~a~~~y~lAk~~e~~D~~ic~~~~~~isGHsLwHL~aA~~~~~l~~~l~~r 254 (268)
..+++.+.++....|...+.++-....+.. .+..+.-..++....+.......++..++.+|
T Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~--~~~l~~~~~~~~~~~~~~~~~~l~ls~~la~R 205 (205)
T PF07695_consen 144 AWRKGNRPARYFLIGWLLFLLSSLIDILRL--FGLLPFNFFTGYLFPIGFLLEVLLLSLALAYR 205 (205)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHHHHHHHH--cCccCCchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 335666678888888888888887765431 12222101111333333444455566666665
No 24
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=43.82 E-value=2.7e+02 Score=25.90 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHHHHHHHHHHHH
Q 024361 93 WALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMMIAYASLFSSL 137 (268)
Q Consensus 93 ~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ia~~~l~~~~ 137 (268)
....+.|...+ .|+.|=++..-++..++.-+|..+....++.+-
T Consensus 138 ~v~l~~G~l~v-~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~N 181 (285)
T TIGR02235 138 ICWLCFGPLAI-AAALYAQSQSFSLIPWKASILVGLATTLILFCS 181 (285)
T ss_pred HHHHHHHHHHH-HHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 34444454444 556666666556667777777776666665543
No 25
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=41.80 E-value=2.9e+02 Score=25.68 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHHHHHHHHHHH
Q 024361 95 LFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMMIAYASLFSS 136 (268)
Q Consensus 95 lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ia~~~l~~~ 136 (268)
..+.|...+ .|+.|-++..-++..++--+|........+.+
T Consensus 143 ~i~~G~l~v-~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~ 183 (284)
T TIGR00751 143 LVFFGPLAV-LGTQYLQAHRVDWVGILPAVATGLLACAVLNI 183 (284)
T ss_pred HHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333443333 56666677666666666666666655555443
No 26
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=41.45 E-value=40 Score=31.61 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHH
Q 024361 92 GWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMM 127 (268)
Q Consensus 92 ~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~ 127 (268)
+..-.++|.+.--+||..|||..|++.-+ +.||.
T Consensus 109 ~~La~~aG~i~AD~~SGl~HWaaD~~Gsv--~tP~v 142 (293)
T KOG3011|consen 109 PALAAYAGYITADLGSGVYHWAADNYGSV--STPWV 142 (293)
T ss_pred HHHHHHHHHHHHhhhcceeEeeccccCcc--ccchh
Confidence 45566999999999999999999998764 56763
No 27
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=34.56 E-value=3.7e+02 Score=26.66 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=12.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHH
Q 024361 118 RVMWDTLPMMIAYASLFSSLLA 139 (268)
Q Consensus 118 ~llwDrLPM~ia~~~l~~~~~~ 139 (268)
..-|=-+|+...++.+.+..+.
T Consensus 320 K~Pwy~l~~~~PlAll~g~~l~ 341 (439)
T TIGR03663 320 KVPWLVVHILVPLAILAAVGLS 341 (439)
T ss_pred CCcchhHHHHHhHHHHHHHHHH
Confidence 5556666666666555555554
No 28
>PLN02922 prenyltransferase
Probab=34.42 E-value=4.1e+02 Score=25.18 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=14.6
Q ss_pred CCcchhhhhhHHHHHHHHHHHHH
Q 024361 115 DDDRVMWDTLPMMIAYASLFSSL 137 (268)
Q Consensus 115 ~~~~llwDrLPM~ia~~~l~~~~ 137 (268)
-++..+.--+|+.+..+.++.+-
T Consensus 186 ~~~~~~l~slp~gll~~~iL~~N 208 (315)
T PLN02922 186 LTPTVLSASVLVGLTTTLILFCS 208 (315)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHc
Confidence 34555667777777776666644
No 29
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=28.80 E-value=6.1e+02 Score=25.46 Aligned_cols=152 Identities=16% Similarity=0.077 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccccccccccccCcchh---------h-HhhhhHHHHHHHHHHHHHHHhh-ccccccc
Q 024361 18 WAGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNT---------L-NVLSNFPFLIAGVMGFVLTLQG-IFFNISF 86 (268)
Q Consensus 18 ~~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~---------~-NvlSNl~Fl~~gl~Gl~~~~r~-~~~~~~~ 86 (268)
-|..++++.++++..--.|-++.||+|-+++--++++++ . |.+=-+.|+++| + -..|+ -..+.++
T Consensus 19 ~gilLl~a~~~Ali~ANSp~~~~Y~~~~~~~~~~~~~~~~l~~sl~~wINDgLMaiFFf~VG---L-EIKrE~l~GeLs~ 94 (423)
T PRK14855 19 AGLLLVGTAVAAFIWANSPWREGYFTLQHTHLALSLGGWSLDLSLEHWVNDGLMAVFFLLVG---L-EIKRELLIGELSS 94 (423)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHcCccccccccccCCCCHHHHHHHHHHHHHHHHHH---H-HHHHHHHcccCCC
Confidence 343444444555555567777889999987654444432 2 344446777776 3 23333 1223333
Q ss_pred -cchhHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHH
Q 024361 87 -RGEVWGWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS---VSFL 160 (268)
Q Consensus 87 -~~~~~~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~---~g~~ 160 (268)
+...+|-..-..|+..=+. .|+=..+.+...=-=-.||+ ++|+.-...+++.|+.... +..+.++.. .|..
T Consensus 95 ~r~a~lPiiAAlGGmivPAl--Iy~~~n~~~~~~~GWgIPmATDIAFAlgvLallG~rvP~~L-rvFLlaLAIvDDlgAI 171 (423)
T PRK14855 95 PRQAALAVVAALGGMLVPAA--LYTALNAGGPGASGWGVPMATDIAFALGVLALLGSRVPLGL-KVFLTALAIVDDLGAV 171 (423)
T ss_pred hHHHHHHHHHHHhchHHHHH--HHheeecCCCccCccccccHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhhhhhh
Confidence 2222344444444443221 22222222222212235776 5666666666777775432 233334433 5555
Q ss_pred HHHhHhhcCChhHHHH
Q 024361 161 SMIYARTFNDFRLCMT 176 (268)
Q Consensus 161 sv~yw~~~~dlr~y~~ 176 (268)
.+.--.|++++.+..+
T Consensus 172 ~VIAlFYt~~i~~~~L 187 (423)
T PRK14855 172 LVIALFYTSGLNLLAL 187 (423)
T ss_pred eeeEeecCCCCCHHHH
Confidence 5555566776655444
No 30
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=17 Score=35.66 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=17.4
Q ss_pred ccccccccccCcchhhHhhh
Q 024361 42 HLFADLRNFFGVPNTLNVLS 61 (268)
Q Consensus 42 h~faD~R~~~gIpn~~NvlS 61 (268)
-.|||.|+|.|+|+.+|+-|
T Consensus 380 T~~aDtRSW~~LP~~i~~AT 399 (449)
T COG3014 380 TTFADTRSWSILPHKIYLAT 399 (449)
T ss_pred ccCccchhhhccchhheeee
Confidence 36899999999999998765
No 31
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=3.8e+02 Score=23.73 Aligned_cols=81 Identities=28% Similarity=0.349 Sum_probs=40.4
Q ss_pred chhhHHHHHH----HHHHHHHHHHHHHhCCCCCCCcccccccccccccCcchhhHhhhhHHHHHH--HHHHHHHHHhhcc
Q 024361 8 QIGRVKRTRI----WAGAFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNTLNVLSNFPFLIA--GVMGFVLTLQGIF 81 (268)
Q Consensus 8 ~~~~~~~~~~----~~~~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~~NvlSNl~Fl~~--gl~Gl~~~~r~~~ 81 (268)
+++|.+|... +++.++|..+.++..|++-.++ |-|| + .+++.|+.++.. -+.|-..-.++ -
T Consensus 39 sLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~--~kFa-------l---~~TlGnll~i~sf~fLmGP~~ql~~-m 105 (175)
T KOG2887|consen 39 SLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSP--RKFA-------L---LYTLGNLLAIGSFAFLMGPVSQLKH-M 105 (175)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ceee-------h---hHHHHHHHHHHHHHHHHhHHHHHHH-h
Confidence 3445555544 4456677777777666544333 3343 3 467888866532 12222211111 1
Q ss_pred ccccccchhHHHHHHHHHHHHHHH
Q 024361 82 FNISFRGEVWGWALFYAGITGVAF 105 (268)
Q Consensus 82 ~~~~~~~~~~~~~lff~gl~~vg~ 105 (268)
..+++++.++.|.+.....+
T Consensus 106 ----~~p~Rl~~T~~~l~~~~~Tl 125 (175)
T KOG2887|consen 106 ----FSPERLPATLSYLATMVLTL 125 (175)
T ss_pred ----cChhHHHHHHHHHHHHHHHH
Confidence 12455666666666555444
No 32
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=26.83 E-value=7.1e+02 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=23.1
Q ss_pred hhhcCCCCCcch-hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024361 108 AYYHLKPDDDRV-MWDTLPMMIAYASLFSSLLAERVDAK 145 (268)
Q Consensus 108 ayyH~~p~~~~l-lwDrLPM~ia~~~l~~~~~~er~~~r 145 (268)
..++..|....| -|-=++++..++.++.....++.-.|
T Consensus 244 ~~l~~lP~~~l~~p~RFl~i~~~~~~ll~a~~~~~~~~k 282 (616)
T PF10131_consen 244 PILKHLPLLQLQFPWRFLSIASVFLALLGALLLWRILKK 282 (616)
T ss_pred HHHHhChHhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777766 44445666556666666666655555
No 33
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=25.35 E-value=6.8e+02 Score=24.83 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCCCCcccccccccccccCcchh---------h-HhhhhHHHHHHHHHHHHHHHhh-ccccccc-cc
Q 024361 21 AFLCLLFFMLATPKFPSSRESHLFADLRNFFGVPNT---------L-NVLSNFPFLIAGVMGFVLTLQG-IFFNISF-RG 88 (268)
Q Consensus 21 ~~~~~~~~~~~~p~ipq~~~yh~faD~R~~~gIpn~---------~-NvlSNl~Fl~~gl~Gl~~~~r~-~~~~~~~-~~ 88 (268)
.++.+.++++..---|-++.||+|-++.--+|++++ . |.+=-+.|+++| + -..|| ...+.++ +.
T Consensus 15 lLl~at~~Ali~ANsp~~~~Y~~~~~~~~~~~~~~~~l~~~l~~WiNDgLMaiFFf~vG---L-EiKrE~~~GeLs~~r~ 90 (383)
T PRK14854 15 ILFSAALLAIVVNNSPLASYYAMLETINVKLGIENLVIDKNLMHWINDGLMAIYFLYIG---L-EIKREIIVGTLSKPSN 90 (383)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcceeeecccccCCCcHHHHHHhhHHHHHHHHHH---H-HHHHHHhcCCCCChHH
Confidence 334444444545556778889999987755555532 2 233446777776 3 23333 1233333 22
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHH
Q 024361 89 EVWGWALFYAGITGVAFGSAYYHLKPDDDRVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS---VSFLSMI 163 (268)
Q Consensus 89 ~~~~~~lff~gl~~vg~GSayyH~~p~~~~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~---~g~~sv~ 163 (268)
..+|-.--..|+..=+.==..+-..|....-. -.||+ ++|+.-...++..|+.... +..+.++.. .|...+.
T Consensus 91 a~lP~~AAlGGmivPAlIy~~~n~~~~~~~GW--~IP~ATDIAFAlgvLallG~rvP~~l-rvFLlaLAIvDDlgAI~VI 167 (383)
T PRK14854 91 IITPAIAAFAGLAMPSLIYLSINHDIKVINGW--AIPSATDIAFTLGILALLGTRVPAKL-KLLVITIAIFDDIAAIAII 167 (383)
T ss_pred HHHHHHHHHhchHHHHHHHHhhccCCcccCcc--ccccHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhhhhHhhe
Confidence 22343333444433221111111112212221 25666 6777777777888876532 334444433 5555555
Q ss_pred hHhhcCChhHH
Q 024361 164 YARTFNDFRLC 174 (268)
Q Consensus 164 yw~~~~dlr~y 174 (268)
--.|++++.+.
T Consensus 168 AlFYt~~i~~~ 178 (383)
T PRK14854 168 AIFYTKSLSLL 178 (383)
T ss_pred eeecCCCccHH
Confidence 56667775553
No 34
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.19 E-value=28 Score=28.52 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.1
Q ss_pred CCcccccccccc--cccCc
Q 024361 37 SSRESHLFADLR--NFFGV 53 (268)
Q Consensus 37 q~~~yh~faD~R--~~~gI 53 (268)
.++.+|+++|+| +..|+
T Consensus 70 as~~FhQWrD~R~~tVyGL 88 (111)
T cd01206 70 TSQKFGQWADSRANTVYGL 88 (111)
T ss_pred cccccccccccccceeeec
Confidence 478899999999 77765
No 35
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=24.46 E-value=7.3e+02 Score=24.94 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhcCCCCCcchhh---h-------------hhHHHHHHHHHHHHHHHHHhhhh
Q 024361 97 YAGITGVAFGSAYYHLKPDDDRVMW---D-------------TLPMMIAYASLFSSLLAERVDAK 145 (268)
Q Consensus 97 f~gl~~vg~GSayyH~~p~~~~llw---D-------------rLPM~ia~~~l~~~~~~er~~~r 145 (268)
-.++..-.++..||=+.|..++++. | .+||++.+..+.. -+..|.+.+
T Consensus 11 ~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~-~l~~~~~~~ 74 (472)
T TIGR00769 11 PLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYT-KLSNILSKE 74 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHH
Confidence 3444445566677777777777655 3 2677777655544 334455544
No 36
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=21.69 E-value=6.6e+02 Score=24.84 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=63.0
Q ss_pred HHHHHhCCCCCCCcccccccccccccCcc---------hhh-HhhhhHHHHHHHHHHHHHHHhh-cccccccc-chhHHH
Q 024361 26 LFFMLATPKFPSSRESHLFADLRNFFGVP---------NTL-NVLSNFPFLIAGVMGFVLTLQG-IFFNISFR-GEVWGW 93 (268)
Q Consensus 26 ~~~~~~~p~ipq~~~yh~faD~R~~~gIp---------n~~-NvlSNl~Fl~~gl~Gl~~~~r~-~~~~~~~~-~~~~~~ 93 (268)
.++++..--.|-++.||+|-|+.-=+++. +.. |.+=-+.|+++| + -..|+ -..+.+++ ...+|-
T Consensus 19 ~~~ALi~ANs~~~~~Y~~~~~~~~~~~~~~~~l~~~l~~wiNDgLMaiFFf~vG---L-EiKrE~~~GeL~~~r~a~lP~ 94 (378)
T PF06965_consen 19 TVLALIWANSPWASSYEAFWHTPLGLGFGSFHLSLSLHHWINDGLMAIFFFVVG---L-EIKRELLVGELSSPRKAALPI 94 (378)
T ss_dssp HHHHHHHHH-SSHHHHHHHTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHH---H-HHHHHHHSTTTSSTTTSHHHH
T ss_pred HHHHHHHHccchHHHHHHHhcCeeEEEECchhccCCHHHHHHHhHHHHHHHHHH---H-HHHHHHhCCCCCChhhhhhHH
Confidence 33334334456789999998875432222 222 334446777776 3 23333 12232332 222343
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCc-chhhhhhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHhHhh
Q 024361 94 ALFYAGITGVAFGSAYYHLKPDDD-RVMWDTLPMM--IAYASLFSSLLAERVDAKIGLSCLIALVS---VSFLSMIYART 167 (268)
Q Consensus 94 ~lff~gl~~vg~GSayyH~~p~~~-~llwDrLPM~--ia~~~l~~~~~~er~~~r~g~~~l~~Ll~---~g~~sv~yw~~ 167 (268)
..-..|+..=+. .|.=.+.++. ..=-=-.||+ ++|+.-...++..|++... +..+.++.. .|...+.--.|
T Consensus 95 ~AAlGGm~vPal--Iyl~~n~~~~~~~~GW~IP~ATDIAFAlgvlal~G~rvP~~l-rvFLlaLAIvDDlgaIlVIA~FY 171 (378)
T PF06965_consen 95 IAALGGMLVPAL--IYLAFNAGGPEAAHGWAIPMATDIAFALGVLALLGKRVPASL-RVFLLALAIVDDLGAILVIALFY 171 (378)
T ss_dssp HHHHHHTTTTHH--HHGGG--SSTTHHHHTSSSS---HHHHHHHHHSS-SSS-SSS-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcchHHHH--HHheeecCCCCcCceEEecccccHHHHHHHHHHhcCCCChHH-HHHHHHHHHHhhhhhHhheeeee
Confidence 333444332111 1222222222 1222235665 5565555566677765432 344444444 66666666777
Q ss_pred cCChhHHHHHH
Q 024361 168 FNDFRLCMTFQ 178 (268)
Q Consensus 168 ~~dlr~y~~vQ 178 (268)
++++.+..+.-
T Consensus 172 t~~i~~~~L~~ 182 (378)
T PF06965_consen 172 TDGISLLWLLL 182 (378)
T ss_dssp -----HHHHHH
T ss_pred CCCCCHHHHHH
Confidence 88877766544
No 37
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.71 E-value=4.9e+02 Score=21.56 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccccc-chh-HHHHHHHHHHHH
Q 024361 60 LSNFPFLIAGVMGFVLTLQGIFFNISFR-GEV-WGWALFYAGITG 102 (268)
Q Consensus 60 lSNl~Fl~~gl~Gl~~~~r~~~~~~~~~-~~~-~~~~lff~gl~~ 102 (268)
.|-+|++...+. +.|..+++.+.+.+ +.+ ..++.||.|+..
T Consensus 36 FSiFPlIaLvLa--vy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ 78 (117)
T PF07226_consen 36 FSIFPLIALVLA--VYCLYQRYLNHPMPEGTPKLALACFFLGLFG 78 (117)
T ss_pred cHHHHHHHHHHH--HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 344555543322 23444444443332 222 357788888764
Done!