Query 024361
Match_columns 268
No_of_seqs 112 out of 127
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 12.8 6.4E+02 0.022 21.6 16.7 36 111-146 291-326 (438)
2 2lx0_A Membrane fusion protein 11.1 1.6E+02 0.0056 17.6 2.2 15 232-246 2-16 (32)
3 1ihs_I Hirutonin; hydrolase(se 10.5 73 0.0025 18.5 0.5 10 36-45 4-13 (26)
4 1evh_A WH1 domain, protein (ME 10.0 65 0.0022 24.8 0.2 18 36-53 72-89 (112)
5 1egx_A VAsp, vasodilator-stimu 9.2 72 0.0025 24.7 0.1 18 36-53 74-91 (115)
6 3arc_L Photosystem II reaction 9.1 2.3E+02 0.008 17.8 2.5 23 7-30 8-30 (37)
7 2esy_A LUNG surfactant protein 8.9 3.2E+02 0.011 16.6 2.9 25 38-64 2-26 (32)
8 3o7q_A L-fucose-proton symport 8.8 8.8E+02 0.03 20.6 11.4 42 110-151 56-97 (438)
9 1j98_A Autoinducer-2 productio 8.5 1.3E+02 0.0043 25.0 1.4 12 231-242 52-63 (157)
10 2ks1_B Epidermal growth factor 7.7 3.4E+02 0.011 17.6 2.9 11 250-260 34-44 (44)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.82 E-value=6.4e+02 Score=21.56 Aligned_cols=36 Identities=6% Similarity=-0.041 Sum_probs=16.4
Q ss_pred cCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024361 111 HLKPDDDRVMWDTLPMMIAYASLFSSLLAERVDAKI 146 (268)
Q Consensus 111 H~~p~~~~llwDrLPM~ia~~~l~~~~~~er~~~r~ 146 (268)
|..+++...+.=-.........++...+.||++.|.
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444443333322222333334455556667766554
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.12 E-value=1.6e+02 Score=17.58 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=12.1
Q ss_pred cchHHHHHHHHHHHH
Q 024361 232 GHSLEHLCSAIVPVL 246 (268)
Q Consensus 232 GHsLwHL~aA~~~~~ 246 (268)
-|+.|.+++++...+
T Consensus 2 khtiweviaglvall 16 (32)
T 2lx0_A 2 KHTIWEVIAGLVALL 16 (32)
T ss_dssp CSSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 489999999988644
No 3
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=10.51 E-value=73 Score=18.50 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=8.2
Q ss_pred CCCccccccc
Q 024361 36 PSSRESHLFA 45 (268)
Q Consensus 36 pq~~~yh~fa 45 (268)
||+.+.|+|-
T Consensus 4 Pqshn~gDFe 13 (26)
T 1ihs_I 4 XQSHNDGDFE 13 (26)
T ss_pred cccCCCCCCC
Confidence 7888888874
No 4
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=10.04 E-value=65 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=14.7
Q ss_pred CCCcccccccccccccCc
Q 024361 36 PSSRESHLFADLRNFFGV 53 (268)
Q Consensus 36 pq~~~yh~faD~R~~~gI 53 (268)
...+.+|+|.|.|..+|+
T Consensus 72 ~~~p~Fh~w~~~~~~~GL 89 (112)
T 1evh_A 72 QATQTFHQWRDARQVYGL 89 (112)
T ss_dssp CCSSSEEEEECSSCEEEE
T ss_pred ecCccceeEecCCEEEEE
Confidence 346788999999988775
No 5
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=9.19 E-value=72 Score=24.69 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.7
Q ss_pred CCCcccccccccccccCc
Q 024361 36 PSSRESHLFADLRNFFGV 53 (268)
Q Consensus 36 pq~~~yh~faD~R~~~gI 53 (268)
...+.+|+|.|.|..+|+
T Consensus 74 ~~~p~FH~w~~~~~~~GL 91 (115)
T 1egx_A 74 QATPNFHQWRDARQVWGL 91 (115)
T ss_dssp CSSTTEEEEESSSCEEEE
T ss_pred ecCccceEEecCCEEEEE
Confidence 356788999999988775
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=9.15 E-value=2.3e+02 Score=17.83 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=13.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 024361 7 QQIGRVKRTRIWAGAFLCLLFFML 30 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~ 30 (268)
|.++--|+..-|| .+++++++.+
T Consensus 8 q~VELNRTSLy~G-LLlifvlavl 30 (37)
T 3arc_L 8 QPVELNRTSLYLG-LLLILVLALL 30 (37)
T ss_dssp CCBCCCHHHHHHH-HHHHHHHHHH
T ss_pred CcceechhhHHHH-HHHHHHHHHH
Confidence 3444567888888 4444444433
No 7
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=8.90 E-value=3.2e+02 Score=16.62 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=16.3
Q ss_pred CcccccccccccccCcchhhHhhhhHH
Q 024361 38 SRESHLFADLRNFFGVPNTLNVLSNFP 64 (268)
Q Consensus 38 ~~~yh~faD~R~~~gIpn~~NvlSNl~ 64 (268)
|++|- |-.|.-||||.+---+.-+.
T Consensus 2 PPdYS--a~P~grf~IPccp~~lKrLl 26 (32)
T 2esy_A 2 PPDYS--AAPRGRFGIPFFPVHLKRLL 26 (32)
T ss_dssp CCCCC--SCCCSSSSCCSTHHHHHHHH
T ss_pred CCccc--cCcCccccCccccccceeEE
Confidence 34565 56778899999764444443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.83 E-value=8.8e+02 Score=20.62 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=27.5
Q ss_pred hcCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 024361 110 YHLKPDDDRVMWDTLPMMIAYASLFSSLLAERVDAKIGLSCL 151 (268)
Q Consensus 110 yH~~p~~~~llwDrLPM~ia~~~l~~~~~~er~~~r~g~~~l 151 (268)
+|..++...++.---.+...+...+...+.||+|.|......
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 566665555555555555666777788889999887654333
No 9
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=8.45 E-value=1.3e+02 Score=25.00 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=10.0
Q ss_pred ccchHHHHHHHH
Q 024361 231 SGHSLEHLCSAI 242 (268)
Q Consensus 231 sGHsLwHL~aA~ 242 (268)
+-||+.||+|..
T Consensus 52 ~iHTlEHL~A~~ 63 (157)
T 1j98_A 52 TIHTLEHLLAFT 63 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 469999999874
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.71 E-value=3.4e+02 Score=17.61 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.0
Q ss_pred HHhhccccccc
Q 024361 250 MLMYRDTKFQR 260 (268)
Q Consensus 250 ~l~~r~~~~~~ 260 (268)
.+++|+.+.+|
T Consensus 34 ~~RRr~~~~kR 44 (44)
T 2ks1_B 34 FMRRRHIVRKR 44 (44)
T ss_dssp HHHTTTCCSCC
T ss_pred HhhhhHhhccC
Confidence 35566665554
Done!