Query 024361
Match_columns 268
No_of_seqs 112 out of 127
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 06:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024361.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024361hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjea_ d.185.1.2 (A:) Autoind 7.1 75 0.0055 24.2 1.4 12 231-242 48-59 (149)
2 d1j6wa_ d.185.1.2 (A:) Autoind 6.7 80 0.0058 24.3 1.4 12 231-242 50-61 (161)
3 d1jb0i_ f.23.17.1 (I:) Subunit 6.7 68 0.005 18.8 0.7 16 178-193 8-23 (38)
4 d1j98a_ d.185.1.2 (A:) Autoind 6.6 83 0.0061 24.0 1.4 12 231-242 49-60 (154)
5 d1m0ka_ f.13.1.1 (A:) Bacterio 6.4 5.3E+02 0.038 19.7 9.2 21 145-165 34-54 (227)
6 d1j6xa_ d.185.1.2 (A:) Autoind 6.4 86 0.0063 23.9 1.4 12 231-242 53-64 (151)
7 d2ouwa1 a.152.1.4 (A:1-134) Hy 6.2 1.6E+02 0.012 20.6 2.9 32 44-75 22-56 (134)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 6.2 2.1E+02 0.015 16.5 2.7 24 120-143 12-35 (37)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 6.2 1.9E+02 0.013 16.7 2.5 20 10-30 11-30 (37)
10 d1pv7a_ f.38.1.2 (A:) Lactose 5.4 2.3E+02 0.017 21.3 3.5 39 110-148 38-76 (417)
No 1
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.09 E-value=75 Score=24.18 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=9.8
Q ss_pred ccchHHHHHHHH
Q 024361 231 SGHSLEHLCSAI 242 (268)
Q Consensus 231 sGHsLwHL~aA~ 242 (268)
+-||+.||+|..
T Consensus 48 ~~HTlEHL~A~~ 59 (149)
T d1vjea_ 48 AIHTLEHLLAGY 59 (149)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 469999998764
No 2
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=6.73 E-value=80 Score=24.32 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=9.7
Q ss_pred ccchHHHHHHHH
Q 024361 231 SGHSLEHLCSAI 242 (268)
Q Consensus 231 sGHsLwHL~aA~ 242 (268)
+-||+.||+|..
T Consensus 50 ~lHTlEHL~At~ 61 (161)
T d1j6wa_ 50 GIHTLEHLFAGF 61 (161)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 569999998764
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.65 E-value=68 Score=18.82 Aligned_cols=16 Identities=50% Similarity=0.947 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 024361 178 QLIPTIAIPVVTFLFP 193 (268)
Q Consensus 178 Q~~p~l~i~~~~~~~~ 193 (268)
+|+|-+.||.+.++.|
T Consensus 8 syLPwI~iPvv~wl~p 23 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMP 23 (38)
T ss_dssp TTHHHHHHHHHHTHHH
T ss_pred HhcchhHHHHHHHHHH
Confidence 3667777777766554
No 4
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=6.55 E-value=83 Score=24.04 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=9.8
Q ss_pred ccchHHHHHHHH
Q 024361 231 SGHSLEHLCSAI 242 (268)
Q Consensus 231 sGHsLwHL~aA~ 242 (268)
+-||+.||+|..
T Consensus 49 ~lHTlEHL~At~ 60 (154)
T d1j98a_ 49 TIHTLEHLLAFT 60 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 569999998764
No 5
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=6.40 E-value=5.3e+02 Score=19.71 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhH
Q 024361 145 KIGLSCLIALVSVSFLSMIYA 165 (268)
Q Consensus 145 r~g~~~l~~Ll~~g~~sv~yw 165 (268)
+.......+.+..++++..|.
T Consensus 34 ~~r~~~~~~~~i~~IA~~~Y~ 54 (227)
T d1m0ka_ 34 DAKKFYAITTLVPAIAFTMYL 54 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHH
Confidence 334445555556677777775
No 6
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=6.38 E-value=86 Score=23.88 Aligned_cols=12 Identities=67% Similarity=0.797 Sum_probs=9.8
Q ss_pred ccchHHHHHHHH
Q 024361 231 SGHSLEHLCSAI 242 (268)
Q Consensus 231 sGHsLwHL~aA~ 242 (268)
+-||+.||+|..
T Consensus 53 ~lHTlEHL~At~ 64 (151)
T d1j6xa_ 53 SLHSLEHLVAEI 64 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 569999998764
No 7
>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=6.21 E-value=1.6e+02 Score=20.56 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=26.5
Q ss_pred ccccccccC---cchhhHhhhhHHHHHHHHHHHHH
Q 024361 44 FADLRNFFG---VPNTLNVLSNFPFLIAGVMGFVL 75 (268)
Q Consensus 44 faD~R~~~g---Ipn~~NvlSNl~Fl~~gl~Gl~~ 75 (268)
|.|-|.-+| +||.+-+++|-|=++-+.++...
T Consensus 22 ~~~i~~~~g~~~vpN~~~~la~~P~~l~~~~~~~~ 56 (134)
T d2ouwa1 22 FDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVK 56 (134)
T ss_dssp HHHHHHHHSSSCCCHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHccCHHHHHHHHHHHH
Confidence 677777777 99999999999998888877654
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.20 E-value=2.1e+02 Score=16.52 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhh
Q 024361 120 MWDTLPMMIAYASLFSSLLAERVD 143 (268)
Q Consensus 120 lwDrLPM~ia~~~l~~~~~~er~~ 143 (268)
+.|.+|++=.+..+++.+....+|
T Consensus 12 ivdvlPiIPv~f~lLafVWQAaV~ 35 (37)
T d2axtk1 12 LVDVLPVIPVLFLALAFVWQAAVG 35 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHhc
Confidence 567788766665665555544443
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.15 E-value=1.9e+02 Score=16.69 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 024361 10 GRVKRTRIWAGAFLCLLFFML 30 (268)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (268)
+--|...-|| .+++++++.+
T Consensus 11 eLNrtsLy~G-lLlifvl~vL 30 (37)
T d2axtl1 11 ELNRTSLYLG-LLLILVLALL 30 (37)
T ss_dssp CCCHHHHHHH-HHHHHHHHHH
T ss_pred ccchhhHHHH-HHHHHHHHHH
Confidence 3367777788 4444554443
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.35 E-value=2.3e+02 Score=21.28 Aligned_cols=39 Identities=13% Similarity=0.311 Sum_probs=24.7
Q ss_pred hcCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 024361 110 YHLKPDDDRVMWDTLPMMIAYASLFSSLLAERVDAKIGL 148 (268)
Q Consensus 110 yH~~p~~~~llwDrLPM~ia~~~l~~~~~~er~~~r~g~ 148 (268)
+|+++....++.=--.....+...+...+.||.|.|...
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 455555555555445555666677778888888877543
Done!