BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024362
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 10 MIMDDLEMFLKRKDFH-------RR-------VGRGKSSLIAGMANFLNFDVYDLELSAL 55
+I+ D++ FL D++ RR G GKSS I +A L + L L+
Sbjct: 218 LIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGK 277
Query: 56 LRGNMELRNLLIATENKSLLVVEDIDCSIELQNR--HAQALAVN-PMVSN-----MNYTA 107
+ L LL +S++++EDID +I+ N A++ + N P +S+ Y
Sbjct: 278 SVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYG 337
Query: 108 RPGINQG 114
P ++ G
Sbjct: 338 NPSVSSG 344
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 6 DVKKMIMDDLEMFLKRKDFH-------RR-------VGRGKSSLIAGMANFLNFDVYDLE 51
+VKKMI DD+ FL+ ++ RR G GK+S + +A L++D+ L
Sbjct: 215 NVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLN 274
Query: 52 LSALLRGNMELRNLLIATENKSLLVVEDIDCSIELQNRHAQ 92
L+ + L +LL K+++++ED+D + + + R +
Sbjct: 275 LAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGE 315
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 6 DVKKMIMDDLEMFLKRKDFHRR--------------VGRGKSSLIAGMANFLNFDVYDLE 51
D+K +++D++ F+ + ++R G GKSSLI +A LN D+ +
Sbjct: 194 DLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVS 253
Query: 52 LSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85
LS+ + ++ +LL KS+L++EDID + +
Sbjct: 254 LSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFK 287
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 11 IMDDLEMFLKRKDFHRRVGR--------------GKSSLIAGMANFLNFDVYDLELSALL 56
++ D+++F++ +D +R +G GK+ LI+ ++N D Y L L++
Sbjct: 179 VLKDVDVFMRNEDTYRELGANYRRGMLLYGESGCGKTGLISIISNKYGMDSYILNLNSKD 238
Query: 57 RGNMELRNLLIATENKSLLVVEDIDCSIELQNRHAQ 92
+ L +L + +S+LV+E+ID IE N +
Sbjct: 239 MSDSVLISLASNVKARSILVIEEIDKQIETLNANGN 274
>sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2
SV=1
Length = 918
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 120 KCWAPTTLESEHPFSLEIEELTE----KVMVTPADVAERLMRSEVPEVALRDLIDFLKNK 175
+CWA TT E FSL+ L + +TP V E L + + L L
Sbjct: 712 RCWAATTTEGLLIFSLDTRVLFDPFELDTSITPGRVREALRQQDFTRAILMAL------- 764
Query: 176 KREQEVEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFL 216
R E + + E + P+ E ++ S +PE+ + +++FL
Sbjct: 765 -RLNESKLVQEALEAVPSGEIE-VVTSSLPELYVEKVLEFL 803
>sp|Q9JLM4|ZMYM3_MOUSE Zinc finger MYM-type protein 3 OS=Mus musculus GN=Zmym3 PE=2 SV=1
Length = 1370
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 124 PTTLESEHPFSLEIEELTEKVMVTP--ADV---AERLMRSEVPEVALRDLIDFLKNKKRE 178
PTTLES IEEL K+ P AD+ AE + +E + A DL D + N+ E
Sbjct: 904 PTTLESTEKIVETIEELKVKIPSNPLEADILAMAEMIAEAEELDKASSDLCDLVSNQSAE 963
Query: 179 QEVEE 183
+E+
Sbjct: 964 GLLED 968
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 175 KKREQEVEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFLKIKKREQGESKAKGVKEE 234
KK ++ K M TP + +VPE ++R I L K+ G++K+K K
Sbjct: 852 KKLPPTASPVSAKEMTTP--------KGKVPEESVRKTIAALPGKESTLGQAKSKMAKAV 903
Query: 235 RAGEAEIEGKASGTCGDMPKIQQIVGKSS 263
A E A GT D+ ++ VG ++
Sbjct: 904 LAQGQSSEQAAKGTTLDLATSKETVGGAT 932
>sp|Q14202|ZMYM3_HUMAN Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2
Length = 1370
Score = 32.7 bits (73), Expect = 2.5, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 124 PTTLESEHPFSLEIEELTEKVMVTP--ADV---AERLMRSEVPEVALRDLIDFLKNKKRE 178
PTTLES IEEL K+ P AD+ AE + +E + A DL D + N+ E
Sbjct: 903 PTTLESTDKIVETIEELKVKIPSNPLEADILAMAEMIAEAEELDKASSDLCDLVSNQSAE 962
Query: 179 QEVEE 183
+E+
Sbjct: 963 GLLED 967
>sp|O57044|RDRP_HV19S Probable RNA-directed RNA polymerase OS=Helminthosporium victoriae
virus-190S PE=3 SV=2
Length = 835
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 81 DCSIELQNRHAQALAVNPMVSNMNYTA----RPGINQGPQVGSKCWAPTTLESEHPFSL- 135
DC+ L N +NP ++ YT R GIN+ +G C A +L S SL
Sbjct: 530 DCATTLNNTKRVGCRMNPTKQSIGYTGAEFLRLGINKSYAIGYLCRAIASLVSGSWTSLD 589
Query: 136 EIEELT--EKVMVTPADVAERLMRSEVPEVALRDLIDFLKNKKREQEVEELTEKVMVTPA 193
E++ L +V R + +PE+ + L+ KR +E LT + P
Sbjct: 590 ELQPLNALNGAIVQTRSCLNRGAATGLPELISASFVG-LRGFKRRDLLELLTGVATIKPG 648
Query: 194 DV 195
V
Sbjct: 649 PV 650
>sp|P42425|LON2_BACSU Lon protease 2 OS=Bacillus subtilis (strain 168) GN=lon2 PE=2 SV=2
Length = 552
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 52 LSALLRGNMELRNLL------IATENKSLLVVEDIDCSI---ELQNRHAQALAVNPMVSN 102
L++ R E N++ TEN+ + +EDI+ I +L +H Q + V P V
Sbjct: 295 LTSYTRNGREAVNMIQIAAGMAVTENRKDITIEDIEWVIHSSQLTPKHEQKIGVEPQVGI 354
Query: 103 MNYTARPGINQG 114
+N A G N G
Sbjct: 355 VNGLAVYGPNSG 366
>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1
SV=2
Length = 919
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 120 KCWAPTTLESEHPFSLEIEELTE----KVMVTPADVAERLMRSEVPEVALRDLIDFLKNK 175
+CWA TT E +SL+ L + VTP V E L + + L L
Sbjct: 715 RCWAATTTEGLLIYSLDTRVLFDPFELDTSVTPGRVREALRQQDFTRAILMAL------- 767
Query: 176 KREQEVEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFL 216
R E + + E + P E ++ S +PE+ + +++FL
Sbjct: 768 -RLNESKLVQEALEAVPRGEIE-VVTSSLPELYVEKVLEFL 806
>sp|Q9PQX0|Y173_UREPA Uncharacterized protein UU173 OS=Ureaplasma parvum serovar 3
(strain ATCC 700970) GN=UU173 PE=4 SV=1
Length = 690
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 33 SSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVV 77
+S + MA F+N ++Y+L++S +++ +L + I + K L+V+
Sbjct: 546 ASRLKEMAEFINEEIYELKVSEIIKNMYDLADFFIVSMGKQLIVI 590
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,532,984
Number of Sequences: 539616
Number of extensions: 3673455
Number of successful extensions: 14947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 14891
Number of HSP's gapped (non-prelim): 123
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)