Query 024362
Match_columns 268
No_of_seqs 214 out of 1258
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 6.4E-46 1.4E-50 356.5 13.7 182 1-225 203-440 (457)
2 KOG0734 AAA+-type ATPase conta 99.7 3.4E-18 7.4E-23 168.0 9.3 146 6-156 311-515 (752)
3 COG1222 RPT1 ATP-dependent 26S 99.7 1.6E-17 3.5E-22 157.1 7.9 148 6-156 158-366 (406)
4 KOG0731 AAA+-type ATPase conta 99.7 2.5E-17 5.4E-22 168.1 8.9 147 5-156 317-527 (774)
5 COG0465 HflB ATP-dependent Zn 99.6 1.5E-15 3.2E-20 152.3 10.3 146 5-156 156-364 (596)
6 KOG0730 AAA+-type ATPase [Post 99.6 4.1E-15 8.9E-20 149.1 11.5 147 5-156 440-646 (693)
7 KOG0736 Peroxisome assembly fa 99.6 1.4E-15 3E-20 154.5 6.0 88 5-92 678-785 (953)
8 KOG0733 Nuclear AAA ATPase (VC 99.5 3.2E-14 7E-19 141.9 9.8 66 24-91 228-300 (802)
9 KOG0735 AAA+-type ATPase [Post 99.5 7.3E-14 1.6E-18 141.2 8.1 129 24-156 706-879 (952)
10 KOG0733 Nuclear AAA ATPase (VC 99.5 1.6E-13 3.4E-18 137.1 9.1 132 24-155 550-726 (802)
11 KOG0726 26S proteasome regulat 99.4 2.6E-14 5.6E-19 133.0 2.5 113 5-120 191-354 (440)
12 KOG0728 26S proteasome regulat 99.4 1.1E-13 2.4E-18 126.8 5.4 93 24-120 186-316 (404)
13 CHL00195 ycf46 Ycf46; Provisio 99.4 3.8E-13 8.3E-18 133.0 9.3 62 24-85 264-332 (489)
14 PTZ00454 26S protease regulato 99.4 5.9E-13 1.3E-17 128.6 10.0 82 4-85 150-252 (398)
15 TIGR01241 FtsH_fam ATP-depende 99.4 5.5E-13 1.2E-17 131.5 9.8 82 3-85 59-161 (495)
16 PLN00020 ribulose bisphosphate 99.4 1.9E-12 4.1E-17 124.1 12.8 62 24-85 153-226 (413)
17 TIGR01243 CDC48 AAA family ATP 99.4 1.8E-12 3.8E-17 133.5 13.2 82 4-85 458-560 (733)
18 KOG0727 26S proteasome regulat 99.4 3.9E-13 8.4E-18 123.4 5.8 62 24-85 194-262 (408)
19 TIGR03689 pup_AAA proteasome A 99.4 5.8E-13 1.3E-17 132.3 5.3 112 6-120 189-363 (512)
20 CHL00176 ftsH cell division pr 99.3 1.6E-12 3.4E-17 132.3 7.6 80 5-85 189-289 (638)
21 PRK03992 proteasome-activating 99.3 4E-12 8.8E-17 122.2 9.9 81 5-85 137-238 (389)
22 CHL00206 ycf2 Ycf2; Provisiona 99.3 3.4E-12 7.4E-17 139.7 8.2 129 24-155 1635-1850(2281)
23 COG0464 SpoVK ATPases of the A 99.3 8.7E-12 1.9E-16 122.5 10.1 91 24-116 281-405 (494)
24 PTZ00361 26 proteosome regulat 99.3 5E-12 1.1E-16 123.6 7.5 62 24-85 222-290 (438)
25 KOG0729 26S proteasome regulat 99.3 6.2E-12 1.3E-16 116.3 6.6 96 24-120 216-346 (435)
26 KOG0651 26S proteasome regulat 99.2 6.1E-12 1.3E-16 117.9 3.5 62 24-85 171-239 (388)
27 PRK10733 hflB ATP-dependent me 99.2 2.8E-11 6E-16 123.4 6.5 62 24-85 190-258 (644)
28 TIGR01242 26Sp45 26S proteasom 99.2 9.5E-11 2.1E-15 111.2 8.5 81 5-85 128-229 (364)
29 COG1223 Predicted ATPase (AAA+ 99.1 7.7E-11 1.7E-15 108.6 6.1 80 12-93 133-230 (368)
30 KOG0652 26S proteasome regulat 99.1 3.3E-11 7.1E-16 111.3 3.7 63 24-86 210-279 (424)
31 PF00004 AAA: ATPase family as 99.1 2.5E-10 5.5E-15 90.6 5.7 63 24-86 3-73 (132)
32 PF05496 RuvB_N: Holliday junc 99.0 1.2E-09 2.6E-14 98.7 7.1 76 9-85 30-115 (233)
33 TIGR01243 CDC48 AAA family ATP 99.0 2.5E-09 5.3E-14 110.4 9.9 62 24-85 217-285 (733)
34 PRK04195 replication factor C 98.9 6.7E-08 1.5E-12 95.3 19.2 84 1-85 16-112 (482)
35 KOG0741 AAA+-type ATPase [Post 98.9 8.9E-10 1.9E-14 109.3 5.3 128 24-156 261-449 (744)
36 KOG0739 AAA+-type ATPase [Post 98.8 3.6E-09 7.8E-14 99.3 4.8 62 24-85 171-239 (439)
37 KOG0738 AAA+-type ATPase [Post 98.8 3E-08 6.5E-13 95.6 10.2 70 16-85 235-318 (491)
38 PRK00080 ruvB Holliday junctio 98.7 4.2E-08 9.1E-13 91.8 8.9 61 24-85 56-116 (328)
39 TIGR00635 ruvB Holliday juncti 98.7 6.1E-08 1.3E-12 89.0 8.4 61 24-85 35-95 (305)
40 COG2255 RuvB Holliday junction 98.7 3.3E-08 7.1E-13 92.1 6.4 77 8-85 31-117 (332)
41 PF05673 DUF815: Protein of un 98.6 1.5E-07 3.2E-12 86.1 8.3 76 5-81 33-116 (249)
42 KOG0737 AAA+-type ATPase [Post 98.5 7.9E-07 1.7E-11 85.1 11.7 183 24-215 132-362 (386)
43 PRK07952 DNA replication prote 98.5 2.1E-07 4.5E-12 84.8 6.8 77 8-84 81-175 (244)
44 KOG0732 AAA+-type ATPase conta 98.5 9.9E-08 2.2E-12 101.0 5.2 93 24-116 304-433 (1080)
45 COG2256 MGS1 ATPase related to 98.5 1.5E-07 3.3E-12 90.9 6.1 61 23-85 52-118 (436)
46 TIGR02640 gas_vesic_GvpN gas v 98.5 4.1E-07 9E-12 82.9 7.9 79 6-85 5-119 (262)
47 PRK13342 recombination factor 98.5 3.2E-07 6.8E-12 88.8 6.9 69 15-85 27-106 (413)
48 cd00009 AAA The AAA+ (ATPases 98.4 9.1E-07 2E-11 69.4 7.8 74 9-83 4-96 (151)
49 TIGR00763 lon ATP-dependent pr 98.4 5.6E-07 1.2E-11 93.7 8.5 80 5-85 326-428 (775)
50 KOG0730 AAA+-type ATPase [Post 98.4 3.8E-07 8.2E-12 92.5 6.6 62 24-85 223-292 (693)
51 PF07728 AAA_5: AAA domain (dy 98.4 1.9E-07 4.2E-12 76.0 2.4 61 24-85 4-79 (139)
52 PLN03025 replication factor C 98.4 1.1E-06 2.4E-11 82.1 7.8 74 11-85 21-113 (319)
53 PHA02544 44 clamp loader, smal 98.3 1.5E-06 3.3E-11 80.1 7.9 77 2-84 24-113 (316)
54 PRK07003 DNA polymerase III su 98.3 3.8E-05 8.3E-10 80.0 18.3 76 9-85 22-133 (830)
55 TIGR02639 ClpA ATP-dependent C 98.3 9.8E-07 2.1E-11 91.4 6.2 75 11-85 190-288 (731)
56 COG0466 Lon ATP-dependent Lon 98.3 1.1E-06 2.4E-11 90.0 6.4 61 24-85 355-431 (782)
57 PRK08939 primosomal protein Dn 98.2 1.8E-06 3.8E-11 81.1 6.4 77 8-84 136-230 (306)
58 TIGR02881 spore_V_K stage V sp 98.2 1.3E-06 2.8E-11 79.3 5.3 60 24-84 47-118 (261)
59 smart00382 AAA ATPases associa 98.2 1.8E-06 4E-11 66.7 5.4 62 24-85 7-92 (148)
60 PRK10787 DNA-binding ATP-depen 98.2 3.4E-06 7.3E-11 88.3 8.7 80 5-85 328-430 (784)
61 PRK14969 DNA polymerase III su 98.2 6.1E-05 1.3E-09 75.6 17.2 61 24-85 43-133 (527)
62 PRK12377 putative replication 98.2 4E-06 8.6E-11 76.6 7.4 61 24-84 106-176 (248)
63 PRK06893 DNA replication initi 98.2 1.6E-06 3.6E-11 77.4 4.8 58 24-84 44-104 (229)
64 TIGR03420 DnaA_homol_Hda DnaA 98.2 3.3E-06 7.1E-11 73.8 6.6 75 8-85 22-104 (226)
65 PRK05342 clpX ATP-dependent pr 98.2 1.9E-06 4.1E-11 84.1 5.5 62 24-85 113-187 (412)
66 PRK14962 DNA polymerase III su 98.2 4E-06 8.7E-11 83.1 7.8 72 12-84 23-130 (472)
67 PRK08181 transposase; Validate 98.2 1.9E-06 4.2E-11 79.6 5.0 72 13-84 97-180 (269)
68 PRK14949 DNA polymerase III su 98.2 5.7E-05 1.2E-09 79.9 16.3 75 10-85 23-133 (944)
69 TIGR02928 orc1/cdc6 family rep 98.2 5.3E-06 1.1E-10 77.8 7.6 79 5-84 21-142 (365)
70 PRK05563 DNA polymerase III su 98.2 0.00015 3.2E-09 73.4 18.4 73 11-84 24-132 (559)
71 PHA02244 ATPase-like protein 98.2 6.2E-06 1.3E-10 79.6 8.0 78 8-85 105-194 (383)
72 PRK14960 DNA polymerase III su 98.1 5.9E-06 1.3E-10 84.8 8.1 60 24-84 42-131 (702)
73 COG2607 Predicted ATPase (AAA+ 98.1 6.5E-06 1.4E-10 75.5 7.5 75 5-80 66-148 (287)
74 PRK08903 DnaA regulatory inact 98.1 6.8E-06 1.5E-10 72.6 7.2 69 9-84 26-103 (227)
75 PRK14956 DNA polymerase III su 98.1 6.8E-06 1.5E-10 81.7 7.3 74 11-85 26-135 (484)
76 TIGR01650 PD_CobS cobaltochela 98.1 4.5E-06 9.7E-11 79.2 5.8 61 24-85 69-148 (327)
77 PRK05896 DNA polymerase III su 98.1 0.00015 3.2E-09 73.9 17.0 73 11-84 24-132 (605)
78 PRK14958 DNA polymerase III su 98.1 8.5E-06 1.8E-10 81.5 7.9 74 11-85 24-133 (509)
79 PF07724 AAA_2: AAA domain (Cd 98.1 3.9E-06 8.5E-11 72.4 4.8 61 24-85 8-82 (171)
80 PRK14961 DNA polymerase III su 98.1 1.2E-05 2.7E-10 76.6 8.5 73 11-84 24-132 (363)
81 PRK12323 DNA polymerase III su 98.1 9.3E-06 2E-10 83.3 8.0 75 10-85 23-138 (700)
82 KOG0742 AAA+-type ATPase [Post 98.1 8.6E-06 1.9E-10 79.6 7.0 84 1-85 357-457 (630)
83 PRK08084 DNA replication initi 98.0 9.8E-06 2.1E-10 72.8 6.7 72 10-84 31-110 (235)
84 KOG0989 Replication factor C, 98.0 5.9E-06 1.3E-10 77.8 5.2 62 24-85 62-143 (346)
85 PRK07764 DNA polymerase III su 98.0 0.00024 5.1E-09 75.0 17.4 74 11-85 23-134 (824)
86 PRK13341 recombination factor 98.0 7.6E-06 1.6E-10 85.0 6.0 60 24-85 57-123 (725)
87 CHL00095 clpC Clp protease ATP 98.0 7E-06 1.5E-10 86.2 5.8 76 10-85 186-285 (821)
88 PRK00411 cdc6 cell division co 98.0 2.1E-05 4.5E-10 74.7 8.4 48 6-53 37-94 (394)
89 TIGR02880 cbbX_cfxQ probable R 98.0 6.4E-06 1.4E-10 76.2 4.8 60 24-84 63-134 (284)
90 PRK10865 protein disaggregatio 98.0 1E-05 2.2E-10 85.4 6.7 62 24-85 204-285 (857)
91 COG1484 DnaC DNA replication p 98.0 9.6E-06 2.1E-10 74.2 5.6 61 24-84 110-180 (254)
92 PF01695 IstB_IS21: IstB-like 98.0 3.8E-06 8.1E-11 72.8 2.7 68 17-84 42-121 (178)
93 KOG0740 AAA+-type ATPase [Post 98.0 4.5E-06 9.7E-11 81.7 3.3 62 24-85 191-259 (428)
94 CHL00181 cbbX CbbX; Provisiona 98.0 8.1E-06 1.8E-10 75.8 4.8 60 24-84 64-135 (287)
95 TIGR00382 clpX endopeptidase C 98.0 1.2E-05 2.6E-10 78.6 5.9 62 24-85 121-195 (413)
96 PRK14963 DNA polymerase III su 97.9 2.7E-05 5.8E-10 77.8 8.3 73 11-84 22-129 (504)
97 PRK06645 DNA polymerase III su 97.9 2.9E-05 6.3E-10 77.7 8.5 74 10-84 28-141 (507)
98 PRK14952 DNA polymerase III su 97.9 3E-05 6.6E-10 78.8 8.7 76 9-85 19-132 (584)
99 KOG0744 AAA+-type ATPase [Post 97.9 1.3E-05 2.8E-10 76.3 5.7 89 1-91 144-268 (423)
100 PRK08691 DNA polymerase III su 97.9 2.9E-05 6.3E-10 80.1 8.6 74 10-84 23-132 (709)
101 PRK06526 transposase; Provisio 97.9 4.8E-06 1E-10 76.2 2.5 68 17-84 93-172 (254)
102 TIGR03346 chaperone_ClpB ATP-d 97.9 1.5E-05 3.3E-10 84.0 6.5 75 11-85 181-280 (852)
103 PRK12402 replication factor C 97.9 3.2E-05 6.9E-10 71.4 7.8 46 9-54 21-76 (337)
104 PRK14955 DNA polymerase III su 97.9 2.9E-05 6.4E-10 75.0 7.8 60 24-84 43-140 (397)
105 COG0470 HolB ATPase involved i 97.9 3.2E-05 7E-10 70.7 7.7 82 4-85 6-123 (325)
106 PRK08116 hypothetical protein; 97.9 1.1E-05 2.3E-10 74.3 4.5 59 24-82 119-189 (268)
107 TIGR02639 ClpA ATP-dependent C 97.9 1.1E-05 2.4E-10 83.7 5.0 60 24-85 489-567 (731)
108 PRK08727 hypothetical protein; 97.9 1.5E-05 3.2E-10 71.5 5.2 58 24-84 46-106 (233)
109 PRK14951 DNA polymerase III su 97.9 3E-05 6.5E-10 79.2 8.0 75 10-85 23-138 (618)
110 PRK06921 hypothetical protein; 97.9 2.9E-05 6.4E-10 71.4 7.2 59 24-82 122-188 (266)
111 TIGR00362 DnaA chromosomal rep 97.9 7.7E-06 1.7E-10 78.8 3.2 61 24-84 141-212 (405)
112 PRK06835 DNA replication prote 97.9 4E-05 8.6E-10 72.8 7.8 76 9-84 166-259 (329)
113 PRK05642 DNA replication initi 97.9 1.6E-05 3.4E-10 71.5 4.8 58 24-84 50-110 (234)
114 PRK14964 DNA polymerase III su 97.9 4.4E-05 9.5E-10 76.1 8.4 73 11-84 21-129 (491)
115 PRK00149 dnaA chromosomal repl 97.9 9.6E-06 2.1E-10 79.3 3.4 61 24-84 153-224 (450)
116 KOG2028 ATPase related to the 97.9 2.6E-05 5.6E-10 75.4 6.1 61 24-84 167-235 (554)
117 PRK14957 DNA polymerase III su 97.8 4.4E-05 9.6E-10 77.0 8.0 73 12-85 25-133 (546)
118 TIGR02397 dnaX_nterm DNA polym 97.8 5.8E-05 1.3E-09 70.4 8.3 74 10-84 21-130 (355)
119 PRK11034 clpA ATP-dependent Cl 97.8 2.7E-05 5.8E-10 81.3 6.6 61 24-85 493-571 (758)
120 KOG2004 Mitochondrial ATP-depe 97.8 2.8E-05 6.1E-10 80.0 6.4 60 24-85 443-519 (906)
121 PRK14970 DNA polymerase III su 97.8 7.4E-05 1.6E-09 70.8 8.2 73 11-84 25-121 (367)
122 PRK09183 transposase/IS protei 97.8 2E-05 4.3E-10 72.1 4.2 73 11-83 89-176 (259)
123 PRK07994 DNA polymerase III su 97.8 5.3E-05 1.1E-09 77.8 7.5 74 11-85 24-133 (647)
124 TIGR03345 VI_ClpV1 type VI sec 97.8 5.4E-05 1.2E-09 80.0 7.2 62 24-85 213-294 (852)
125 PRK07940 DNA polymerase III su 97.8 9.5E-05 2.1E-09 71.8 8.3 81 5-85 11-131 (394)
126 PRK14954 DNA polymerase III su 97.7 0.00012 2.6E-09 75.0 8.3 75 10-85 23-141 (620)
127 PRK06620 hypothetical protein; 97.7 4.7E-05 1E-09 67.8 4.6 48 24-82 49-96 (214)
128 PRK14948 DNA polymerase III su 97.7 0.00014 3E-09 74.5 8.6 74 10-84 23-134 (620)
129 PRK14965 DNA polymerase III su 97.7 0.00013 2.7E-09 74.1 8.2 75 10-85 23-133 (576)
130 PRK14953 DNA polymerase III su 97.7 0.00015 3.2E-09 72.3 8.4 74 10-84 23-132 (486)
131 PRK06305 DNA polymerase III su 97.6 0.00013 2.9E-09 71.8 7.7 74 10-84 24-134 (451)
132 PRK14088 dnaA chromosomal repl 97.6 3.8E-05 8.3E-10 75.3 3.8 61 24-84 135-207 (440)
133 PRK00440 rfc replication facto 97.6 0.00022 4.7E-09 65.3 8.5 75 10-85 24-116 (319)
134 PRK06647 DNA polymerase III su 97.6 0.00018 3.8E-09 72.9 8.4 73 11-84 24-132 (563)
135 PF00308 Bac_DnaA: Bacterial d 97.6 4.3E-05 9.2E-10 68.2 3.5 62 24-85 39-111 (219)
136 PRK14950 DNA polymerase III su 97.6 0.00017 3.6E-09 73.3 8.2 60 24-84 43-133 (585)
137 PF13173 AAA_14: AAA domain 97.6 6.9E-05 1.5E-09 60.7 4.4 61 24-84 7-74 (128)
138 TIGR00602 rad24 checkpoint pro 97.6 6.8E-05 1.5E-09 76.9 5.3 75 11-85 92-209 (637)
139 PRK12422 chromosomal replicati 97.6 4.5E-05 9.8E-10 75.1 3.8 61 24-84 146-215 (445)
140 PRK14959 DNA polymerase III su 97.6 0.00018 3.8E-09 73.7 8.0 73 11-84 24-132 (624)
141 KOG1969 DNA replication checkp 97.6 0.00011 2.4E-09 75.8 6.3 59 25-84 332-400 (877)
142 TIGR00678 holB DNA polymerase 97.6 0.00015 3.3E-09 62.2 6.2 62 24-85 19-110 (188)
143 PRK11034 clpA ATP-dependent Cl 97.6 8.6E-05 1.9E-09 77.6 5.1 62 24-85 212-292 (758)
144 PRK14087 dnaA chromosomal repl 97.6 8.5E-05 1.8E-09 73.2 4.8 61 24-84 146-219 (450)
145 PRK14086 dnaA chromosomal repl 97.5 6.7E-05 1.4E-09 76.6 3.9 62 24-85 319-391 (617)
146 COG0714 MoxR-like ATPases [Gen 97.5 0.0002 4.3E-09 67.2 6.8 72 13-85 35-126 (329)
147 PRK07133 DNA polymerase III su 97.5 0.00027 5.9E-09 73.4 8.3 60 24-84 45-131 (725)
148 PHA02624 large T antigen; Prov 97.5 0.00025 5.3E-09 72.4 7.5 71 8-83 414-490 (647)
149 PRK08451 DNA polymerase III su 97.5 0.00042 9E-09 69.9 8.7 74 11-85 22-131 (535)
150 CHL00095 clpC Clp protease ATP 97.5 0.00011 2.3E-09 77.4 4.5 60 24-85 544-625 (821)
151 PRK09111 DNA polymerase III su 97.5 0.00038 8.3E-09 71.0 8.2 60 24-84 51-145 (598)
152 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00045 9.7E-09 73.1 8.6 80 5-85 571-681 (852)
153 PF13401 AAA_22: AAA domain; P 97.4 0.00017 3.7E-09 57.3 4.2 32 24-55 9-48 (131)
154 PHA00729 NTP-binding motif con 97.4 0.00014 3E-09 65.8 3.7 61 24-84 22-95 (226)
155 COG1474 CDC6 Cdc6-related prot 97.4 0.00051 1.1E-08 66.2 7.7 81 5-85 23-137 (366)
156 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00011 2.4E-09 77.6 3.4 60 24-85 601-682 (852)
157 PRK14971 DNA polymerase III su 97.4 0.00056 1.2E-08 70.0 8.3 74 11-85 25-135 (614)
158 PF12774 AAA_6: Hydrolytic ATP 97.3 0.00032 7E-09 63.5 5.4 61 24-85 37-98 (231)
159 PRK11331 5-methylcytosine-spec 97.3 0.00084 1.8E-08 66.5 8.5 62 24-85 199-286 (459)
160 COG1219 ClpX ATP-dependent pro 97.3 0.00038 8.2E-09 66.4 5.7 62 24-85 102-176 (408)
161 TIGR03015 pepcterm_ATPase puta 97.3 0.0018 3.8E-08 58.1 9.5 41 4-44 24-68 (269)
162 PRK04132 replication factor C 97.3 0.0097 2.1E-07 63.1 16.3 58 27-85 574-644 (846)
163 PHA02774 E1; Provisional 97.3 0.00055 1.2E-08 69.6 6.8 63 10-80 419-488 (613)
164 KOG0991 Replication factor C, 97.3 0.0034 7.5E-08 57.9 11.2 75 10-85 34-127 (333)
165 PRK10865 protein disaggregatio 97.3 0.00034 7.4E-09 74.1 5.3 61 24-85 603-684 (857)
166 COG0542 clpA ATP-binding subun 97.2 0.00024 5.3E-09 74.1 3.9 61 24-85 526-607 (786)
167 PF00910 RNA_helicase: RNA hel 97.2 0.00015 3.3E-09 57.4 1.7 53 24-85 3-63 (107)
168 PF13207 AAA_17: AAA domain; P 97.2 0.00029 6.3E-09 55.5 2.9 28 25-52 5-32 (121)
169 PRK05564 DNA polymerase III su 97.1 0.0017 3.8E-08 60.4 8.3 75 11-85 12-107 (313)
170 PRK09087 hypothetical protein; 97.1 0.00052 1.1E-08 61.6 4.6 51 24-83 49-99 (226)
171 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00082 1.8E-08 64.7 5.5 64 5-68 57-143 (361)
172 KOG0735 AAA+-type ATPase [Post 97.1 0.00075 1.6E-08 69.8 5.3 81 2-85 411-508 (952)
173 KOG0745 Putative ATP-dependent 97.1 0.00094 2E-08 65.9 5.7 62 24-85 231-305 (564)
174 PTZ00112 origin recognition co 97.0 0.002 4.3E-08 68.6 8.1 80 6-85 762-883 (1164)
175 PRK08058 DNA polymerase III su 97.0 0.002 4.2E-08 60.9 7.4 77 9-85 12-124 (329)
176 KOG0736 Peroxisome assembly fa 97.0 0.0014 2.9E-08 68.4 6.5 75 11-85 409-504 (953)
177 PF00158 Sigma54_activat: Sigm 97.0 0.0043 9.3E-08 53.3 8.5 78 6-85 6-107 (168)
178 PF00931 NB-ARC: NB-ARC domain 96.9 0.0035 7.5E-08 56.5 8.0 76 10-85 3-115 (287)
179 TIGR01618 phage_P_loop phage n 96.9 0.00071 1.5E-08 61.0 3.4 60 24-85 17-95 (220)
180 PF01637 Arch_ATPase: Archaeal 96.8 0.0019 4.1E-08 55.4 5.2 37 8-44 4-45 (234)
181 cd01120 RecA-like_NTPases RecA 96.8 0.0036 7.8E-08 50.4 6.4 31 24-54 4-37 (165)
182 PF13604 AAA_30: AAA domain; P 96.8 0.0055 1.2E-07 53.6 7.8 78 3-84 2-106 (196)
183 PF14532 Sigma54_activ_2: Sigm 96.7 0.002 4.4E-08 52.8 4.5 72 7-85 6-83 (138)
184 PRK08118 topology modulation p 96.7 0.0028 6.1E-08 54.1 5.2 55 24-79 6-66 (167)
185 PRK10646 ADP-binding protein; 96.7 0.013 2.8E-07 50.1 9.1 42 4-45 10-54 (153)
186 PRK13531 regulatory ATPase Rav 96.7 0.0022 4.7E-08 64.2 4.9 37 9-45 26-65 (498)
187 TIGR02902 spore_lonB ATP-depen 96.7 0.0038 8.1E-08 62.9 6.6 31 24-54 91-131 (531)
188 PRK00131 aroK shikimate kinase 96.7 0.0014 2.9E-08 54.5 2.9 28 24-51 9-36 (175)
189 TIGR00390 hslU ATP-dependent p 96.7 0.0019 4.2E-08 63.5 4.4 46 24-69 52-104 (441)
190 PF03215 Rad17: Rad17 cell cyc 96.6 0.0033 7.1E-08 63.3 5.8 48 4-51 24-77 (519)
191 PRK09112 DNA polymerase III su 96.6 0.0091 2E-07 57.2 8.4 36 10-45 30-71 (351)
192 PRK05800 cobU adenosylcobinami 96.6 0.0038 8.3E-08 53.8 5.1 31 24-54 6-36 (170)
193 PF13177 DNA_pol3_delta2: DNA 96.5 0.02 4.4E-07 48.6 9.3 76 10-85 4-116 (162)
194 TIGR02974 phageshock_pspF psp 96.5 0.012 2.5E-07 55.8 8.5 78 6-85 6-107 (329)
195 PF13086 AAA_11: AAA domain; P 96.5 0.004 8.7E-08 53.3 4.8 37 3-43 2-41 (236)
196 TIGR02903 spore_lon_C ATP-depe 96.5 0.0046 9.9E-08 63.4 5.7 31 24-54 180-220 (615)
197 PRK07471 DNA polymerase III su 96.4 0.012 2.5E-07 56.8 8.2 35 10-44 26-66 (365)
198 PRK13947 shikimate kinase; Pro 96.4 0.0024 5.3E-08 53.5 3.0 29 24-52 6-34 (171)
199 TIGR01817 nifA Nif-specific re 96.4 0.011 2.4E-07 59.1 8.1 77 7-85 204-304 (534)
200 PRK05201 hslU ATP-dependent pr 96.4 0.0033 7.1E-08 62.0 4.3 46 24-69 55-107 (443)
201 TIGR02688 conserved hypothetic 96.4 0.0045 9.8E-08 61.1 5.1 77 3-84 190-273 (449)
202 TIGR03499 FlhF flagellar biosy 96.4 0.0088 1.9E-07 55.4 6.7 56 24-79 199-280 (282)
203 PF06068 TIP49: TIP49 C-termin 96.4 0.0035 7.5E-08 60.9 4.0 46 24-69 55-106 (398)
204 cd00464 SK Shikimate kinase (S 96.4 0.0029 6.2E-08 51.7 3.0 29 24-52 4-32 (154)
205 PRK14722 flhF flagellar biosyn 96.3 0.0052 1.1E-07 59.5 5.1 58 24-81 142-225 (374)
206 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0066 1.4E-07 50.7 5.0 44 4-47 4-50 (133)
207 cd02020 CMPK Cytidine monophos 96.3 0.0032 6.9E-08 50.8 2.8 28 24-51 4-31 (147)
208 PF07726 AAA_3: ATPase family 96.3 0.0032 6.9E-08 52.7 2.7 60 25-85 5-76 (131)
209 COG0802 Predicted ATPase or ki 96.3 0.022 4.9E-07 48.6 7.9 41 4-44 7-50 (149)
210 PRK03839 putative kinase; Prov 96.3 0.0032 7E-08 53.5 2.9 28 24-51 5-32 (180)
211 PRK05707 DNA polymerase III su 96.2 0.011 2.3E-07 56.2 6.4 195 24-223 27-259 (328)
212 PRK06217 hypothetical protein; 96.2 0.0039 8.4E-08 53.5 3.1 28 24-51 6-33 (183)
213 PF05729 NACHT: NACHT domain 96.2 0.0073 1.6E-07 49.2 4.5 61 25-85 6-95 (166)
214 TIGR02237 recomb_radB DNA repa 96.2 0.014 3.1E-07 50.6 6.5 31 24-54 17-50 (209)
215 PRK00625 shikimate kinase; Pro 96.2 0.0039 8.5E-08 53.9 2.9 27 25-51 6-32 (173)
216 cd00544 CobU Adenosylcobinamid 96.1 0.017 3.6E-07 49.9 6.7 30 25-54 5-34 (169)
217 PRK09361 radB DNA repair and r 96.1 0.014 3E-07 51.4 6.1 41 13-53 10-60 (225)
218 KOG3347 Predicted nucleotide k 96.1 0.0038 8.2E-08 53.8 2.4 27 25-51 13-39 (176)
219 PF12775 AAA_7: P-loop contain 96.0 0.0073 1.6E-07 55.8 4.3 71 14-85 25-114 (272)
220 PRK07261 topology modulation p 96.0 0.0053 1.1E-07 52.5 3.0 29 24-52 5-33 (171)
221 PRK13949 shikimate kinase; Pro 96.0 0.0049 1.1E-07 52.8 2.7 28 24-51 6-33 (169)
222 COG1936 Predicted nucleotide k 96.0 0.0041 8.9E-08 54.5 2.2 25 26-51 7-31 (180)
223 PRK08699 DNA polymerase III su 96.0 0.017 3.8E-07 54.7 6.6 62 24-85 26-127 (325)
224 PF01202 SKI: Shikimate kinase 96.0 0.0044 9.4E-08 52.1 2.2 25 28-52 1-25 (158)
225 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0061 1.3E-07 51.6 3.0 27 24-50 4-30 (183)
226 COG0464 SpoVK ATPases of the A 95.9 0.0049 1.1E-07 60.9 2.7 61 24-85 23-90 (494)
227 PRK03731 aroL shikimate kinase 95.9 0.0066 1.4E-07 51.0 3.1 29 24-52 7-35 (171)
228 PRK11608 pspF phage shock prot 95.9 0.033 7.1E-07 52.6 7.9 77 7-85 14-114 (326)
229 PRK08154 anaerobic benzoate ca 95.8 0.012 2.7E-07 55.0 5.0 49 3-51 108-165 (309)
230 PRK15429 formate hydrogenlyase 95.8 0.026 5.7E-07 58.2 7.8 78 6-85 383-484 (686)
231 PF13671 AAA_33: AAA domain; P 95.8 0.0049 1.1E-07 49.7 1.9 20 25-44 5-24 (143)
232 PLN02199 shikimate kinase 95.8 0.015 3.3E-07 54.9 5.4 49 4-52 85-135 (303)
233 KOG0990 Replication factor C, 95.8 0.0052 1.1E-07 58.6 2.1 77 9-85 47-145 (360)
234 PF03029 ATP_bind_1: Conserved 95.8 0.0077 1.7E-07 54.6 3.2 29 26-54 3-34 (238)
235 PRK14532 adenylate kinase; Pro 95.8 0.0075 1.6E-07 51.5 2.9 27 24-50 5-31 (188)
236 TIGR01313 therm_gnt_kin carboh 95.8 0.0081 1.8E-07 50.1 3.0 25 25-49 4-28 (163)
237 PRK05057 aroK shikimate kinase 95.7 0.0081 1.8E-07 51.4 3.0 29 24-52 9-37 (172)
238 cd01428 ADK Adenylate kinase ( 95.7 0.0084 1.8E-07 50.9 3.0 27 24-50 4-30 (194)
239 PF08303 tRNA_lig_kinase: tRNA 95.7 0.019 4.1E-07 49.9 5.0 52 26-79 6-62 (168)
240 TIGR00376 DNA helicase, putati 95.7 0.029 6.3E-07 57.8 7.2 48 3-54 158-211 (637)
241 COG1224 TIP49 DNA helicase TIP 95.6 0.0072 1.6E-07 58.6 2.5 46 24-69 70-121 (450)
242 COG1102 Cmk Cytidylate kinase 95.6 0.0086 1.9E-07 52.2 2.7 25 25-49 6-30 (179)
243 PRK06547 hypothetical protein; 95.6 0.015 3.3E-07 50.1 4.2 28 24-51 20-47 (172)
244 PF06309 Torsin: Torsin; Inte 95.6 0.017 3.8E-07 48.0 4.3 37 7-43 33-77 (127)
245 PRK11388 DNA-binding transcrip 95.6 0.039 8.5E-07 56.4 7.8 76 8-85 334-430 (638)
246 cd02019 NK Nucleoside/nucleoti 95.6 0.015 3.3E-07 42.4 3.5 27 26-52 6-33 (69)
247 PRK13946 shikimate kinase; Pro 95.5 0.009 1.9E-07 51.4 2.6 29 24-52 15-43 (184)
248 COG0703 AroK Shikimate kinase 95.5 0.008 1.7E-07 52.4 2.2 28 24-51 7-34 (172)
249 TIGR01360 aden_kin_iso1 adenyl 95.5 0.011 2.4E-07 49.9 3.0 27 24-50 8-34 (188)
250 PF13191 AAA_16: AAA ATPase do 95.5 0.013 2.8E-07 48.9 3.3 47 8-54 5-62 (185)
251 KOG1051 Chaperone HSP104 and r 95.5 0.021 4.5E-07 60.8 5.5 61 25-85 597-674 (898)
252 PRK06762 hypothetical protein; 95.5 0.013 2.9E-07 48.9 3.3 28 24-51 7-34 (166)
253 COG1373 Predicted ATPase (AAA+ 95.4 0.03 6.5E-07 54.5 6.1 76 10-85 24-108 (398)
254 COG5271 MDN1 AAA ATPase contai 95.4 0.017 3.7E-07 65.1 4.7 58 24-85 1548-1625(4600)
255 PF14516 AAA_35: AAA-like doma 95.4 0.02 4.3E-07 54.1 4.7 31 24-54 36-69 (331)
256 cd02021 GntK Gluconate kinase 95.4 0.013 2.7E-07 48.1 2.9 25 25-49 5-29 (150)
257 PRK06696 uridine kinase; Valid 95.4 0.045 9.8E-07 48.5 6.7 36 24-59 27-65 (223)
258 PRK04182 cytidylate kinase; Pr 95.4 0.012 2.7E-07 49.1 2.8 26 25-50 6-31 (180)
259 PRK15424 propionate catabolism 95.4 0.056 1.2E-06 54.8 7.9 76 8-85 228-336 (538)
260 COG0396 sufC Cysteine desulfur 95.3 0.007 1.5E-07 55.4 1.2 41 9-49 17-60 (251)
261 PRK05022 anaerobic nitric oxid 95.3 0.061 1.3E-06 53.7 8.0 75 9-85 197-295 (509)
262 PRK02496 adk adenylate kinase; 95.3 0.013 2.7E-07 50.0 2.7 27 24-50 6-32 (184)
263 TIGR02173 cyt_kin_arch cytidyl 95.3 0.014 3E-07 48.5 2.9 27 24-50 5-31 (171)
264 PRK11361 acetoacetate metaboli 95.3 0.051 1.1E-06 52.5 7.1 75 9-85 153-251 (457)
265 PF00406 ADK: Adenylate kinase 95.3 0.012 2.7E-07 48.6 2.4 24 25-48 2-25 (151)
266 PF13245 AAA_19: Part of AAA d 95.3 0.035 7.5E-07 41.7 4.6 30 25-54 16-52 (76)
267 PRK14531 adenylate kinase; Pro 95.3 0.014 3.1E-07 50.0 2.9 27 24-50 7-33 (183)
268 PRK11545 gntK gluconate kinase 95.2 0.015 3.3E-07 49.3 3.0 26 26-51 2-27 (163)
269 KOG0741 AAA+-type ATPase [Post 95.2 0.034 7.3E-07 56.5 5.8 62 24-85 543-612 (744)
270 PRK15455 PrkA family serine pr 95.2 0.022 4.7E-07 58.4 4.5 29 24-52 108-137 (644)
271 PF01745 IPT: Isopentenyl tran 95.2 0.015 3.2E-07 52.8 3.0 29 24-52 6-34 (233)
272 PRK13948 shikimate kinase; Pro 95.2 0.016 3.4E-07 50.6 3.1 27 25-51 16-42 (182)
273 PRK14530 adenylate kinase; Pro 95.2 0.016 3.6E-07 50.9 3.1 27 24-50 8-34 (215)
274 PRK13889 conjugal transfer rel 95.1 0.071 1.5E-06 57.6 8.3 79 2-84 346-446 (988)
275 PRK08233 hypothetical protein; 95.1 0.021 4.6E-07 47.8 3.4 27 25-51 9-36 (182)
276 PF13521 AAA_28: AAA domain; P 95.1 0.013 2.8E-07 49.0 2.0 24 24-48 4-27 (163)
277 PRK14528 adenylate kinase; Pro 95.0 0.019 4E-07 49.7 2.8 27 24-50 6-32 (186)
278 PF02367 UPF0079: Uncharacteri 95.0 0.03 6.6E-07 46.2 3.9 36 11-46 4-42 (123)
279 PRK10923 glnG nitrogen regulat 94.9 0.099 2.1E-06 50.9 7.9 74 10-85 149-246 (469)
280 PRK10820 DNA-binding transcrip 94.9 0.099 2.2E-06 52.5 8.1 75 9-85 214-312 (520)
281 COG0593 DnaA ATPase involved i 94.9 0.031 6.7E-07 54.8 4.4 58 24-85 118-189 (408)
282 PRK12723 flagellar biosynthesi 94.9 0.16 3.4E-06 49.5 9.3 31 24-54 179-216 (388)
283 cd03283 ABC_MutS-like MutS-lik 94.9 0.045 9.9E-07 48.0 5.1 59 24-82 30-116 (199)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.064 1.4E-06 44.4 5.6 60 25-88 32-105 (144)
285 cd02027 APSK Adenosine 5'-phos 94.9 0.026 5.6E-07 47.1 3.3 28 25-52 5-35 (149)
286 TIGR02329 propionate_PrpR prop 94.9 0.083 1.8E-06 53.4 7.4 77 7-85 220-321 (526)
287 cd03227 ABC_Class2 ABC-type Cl 94.8 0.05 1.1E-06 45.8 4.8 64 26-89 28-117 (162)
288 cd01983 Fer4_NifH The Fer4_Nif 94.8 0.031 6.8E-07 40.9 3.2 28 24-51 4-34 (99)
289 cd01394 radB RadB. The archaea 94.7 0.084 1.8E-06 46.1 6.4 54 13-68 6-69 (218)
290 cd01672 TMPK Thymidine monopho 94.7 0.054 1.2E-06 45.6 4.9 43 25-67 6-51 (200)
291 PRK10078 ribose 1,5-bisphospho 94.7 0.025 5.4E-07 48.6 2.9 26 24-49 7-32 (186)
292 KOG1514 Origin recognition com 94.7 0.27 5.9E-06 51.2 10.7 110 6-120 403-569 (767)
293 cd02025 PanK Pantothenate kina 94.7 0.047 1E-06 48.7 4.7 37 26-62 6-47 (220)
294 PRK12727 flagellar biosynthesi 94.7 0.12 2.6E-06 52.6 8.0 57 24-80 355-437 (559)
295 KOG1968 Replication factor C, 94.6 0.037 8.1E-07 58.9 4.5 64 25-90 363-446 (871)
296 COG1428 Deoxynucleoside kinase 94.6 0.025 5.4E-07 51.0 2.7 24 26-49 11-34 (216)
297 COG0542 clpA ATP-binding subun 94.5 0.096 2.1E-06 55.2 7.2 77 8-84 179-275 (786)
298 PF05707 Zot: Zonular occluden 94.5 0.027 5.9E-07 48.9 2.7 61 24-85 5-93 (193)
299 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.12 2.6E-06 42.9 6.5 78 12-89 15-116 (157)
300 TIGR01818 ntrC nitrogen regula 94.5 0.13 2.9E-06 49.8 7.7 76 8-85 143-242 (463)
301 cd01124 KaiC KaiC is a circadi 94.5 0.04 8.8E-07 46.3 3.6 31 24-54 4-37 (187)
302 PRK04040 adenylate kinase; Pro 94.5 0.031 6.6E-07 48.8 2.9 25 24-48 7-33 (188)
303 PRK09518 bifunctional cytidyla 94.4 0.058 1.3E-06 56.2 5.3 25 26-50 8-32 (712)
304 TIGR00764 lon_rel lon-related 94.4 0.091 2E-06 54.0 6.6 23 24-46 42-64 (608)
305 PRK05703 flhF flagellar biosyn 94.4 0.098 2.1E-06 51.4 6.5 31 24-54 226-261 (424)
306 cd02023 UMPK Uridine monophosp 94.3 0.043 9.4E-07 47.3 3.5 30 25-54 5-35 (198)
307 COG2812 DnaX DNA polymerase II 94.3 0.046 9.9E-07 55.1 4.0 60 24-84 43-132 (515)
308 PRK05480 uridine/cytidine kina 94.2 0.048 1E-06 47.5 3.6 30 25-54 12-42 (209)
309 TIGR02768 TraA_Ti Ti-type conj 94.2 0.15 3.1E-06 53.6 7.6 78 2-83 352-451 (744)
310 TIGR01351 adk adenylate kinase 94.2 0.038 8.2E-07 48.4 2.8 27 24-50 4-30 (210)
311 PRK00279 adk adenylate kinase; 94.2 0.04 8.6E-07 48.4 3.0 27 24-50 5-31 (215)
312 PRK15115 response regulator Gl 94.1 0.17 3.6E-06 48.9 7.5 60 24-85 162-242 (444)
313 TIGR03574 selen_PSTK L-seryl-t 94.1 0.045 9.8E-07 49.1 3.2 28 25-52 5-35 (249)
314 PLN02200 adenylate kinase fami 94.1 0.043 9.4E-07 49.5 3.1 26 24-49 48-73 (234)
315 TIGR00017 cmk cytidylate kinas 94.0 0.044 9.5E-07 49.0 3.0 24 26-49 9-32 (217)
316 PRK14527 adenylate kinase; Pro 94.0 0.032 6.8E-07 48.1 2.0 27 24-50 11-37 (191)
317 PF08423 Rad51: Rad51; InterP 94.0 0.16 3.4E-06 46.5 6.6 55 13-68 25-95 (256)
318 PTZ00088 adenylate kinase 1; P 93.9 0.044 9.6E-07 49.5 2.9 28 24-51 11-38 (229)
319 PRK14526 adenylate kinase; Pro 93.9 0.048 1E-06 48.6 3.0 26 24-49 5-30 (211)
320 cd02028 UMPK_like Uridine mono 93.9 0.054 1.2E-06 46.7 3.2 30 26-55 6-38 (179)
321 cd01123 Rad51_DMC1_radA Rad51_ 93.8 0.12 2.5E-06 45.5 5.3 44 24-68 24-76 (235)
322 PRK11889 flhF flagellar biosyn 93.8 0.28 6.1E-06 48.5 8.4 47 6-52 218-277 (436)
323 cd03281 ABC_MSH5_euk MutS5 hom 93.8 0.11 2.5E-06 46.0 5.3 62 24-85 34-122 (213)
324 PRK10365 transcriptional regul 93.8 0.18 4E-06 48.3 7.1 75 9-85 149-247 (441)
325 TIGR02236 recomb_radA DNA repa 93.8 0.12 2.6E-06 48.0 5.6 56 13-69 82-153 (310)
326 cd01393 recA_like RecA is a b 93.8 0.11 2.4E-06 45.4 5.0 45 24-69 24-77 (226)
327 PRK11823 DNA repair protein Ra 93.7 0.082 1.8E-06 52.2 4.6 61 24-84 85-169 (446)
328 PF03193 DUF258: Protein of un 93.7 0.053 1.2E-06 46.7 2.8 39 11-49 25-65 (161)
329 cd00227 CPT Chloramphenicol (C 93.7 0.045 9.8E-07 46.5 2.4 26 25-50 8-33 (175)
330 KOG2170 ATPase of the AAA+ sup 93.7 0.16 3.6E-06 48.3 6.2 38 6-43 89-134 (344)
331 PLN02165 adenylate isopentenyl 93.6 0.05 1.1E-06 52.1 2.6 28 24-51 48-75 (334)
332 PF13238 AAA_18: AAA domain; P 93.5 0.045 9.7E-07 42.7 2.0 19 25-43 4-22 (129)
333 cd01128 rho_factor Transcripti 93.5 0.15 3.2E-06 46.8 5.5 22 24-45 21-42 (249)
334 PRK00023 cmk cytidylate kinase 93.5 0.047 1E-06 48.9 2.3 29 24-52 9-37 (225)
335 cd03115 SRP The signal recogni 93.5 0.076 1.7E-06 44.7 3.4 31 24-54 5-38 (173)
336 cd01131 PilT Pilus retraction 93.5 0.13 2.9E-06 44.9 5.0 21 24-44 6-26 (198)
337 PRK00889 adenylylsulfate kinas 93.5 0.073 1.6E-06 45.0 3.3 29 24-52 9-40 (175)
338 PRK06871 DNA polymerase III su 93.5 0.35 7.6E-06 46.1 8.2 62 24-85 29-121 (325)
339 cd04159 Arl10_like Arl10-like 93.5 0.18 3.9E-06 39.9 5.4 19 24-42 4-22 (159)
340 PRK01184 hypothetical protein; 93.5 0.062 1.3E-06 45.7 2.8 24 25-49 7-30 (184)
341 PF13476 AAA_23: AAA domain; P 93.4 0.036 7.8E-07 46.5 1.3 23 24-46 24-46 (202)
342 PRK04301 radA DNA repair and r 93.4 0.17 3.7E-06 47.4 5.9 57 12-69 88-160 (317)
343 cd02022 DPCK Dephospho-coenzym 93.4 0.07 1.5E-06 45.7 3.1 26 25-51 5-30 (179)
344 TIGR00235 udk uridine kinase. 93.4 0.066 1.4E-06 46.8 2.9 30 24-53 11-41 (207)
345 PF07693 KAP_NTPase: KAP famil 93.3 0.2 4.3E-06 46.0 6.2 59 11-69 4-76 (325)
346 PHA02530 pseT polynucleotide k 93.3 0.068 1.5E-06 48.9 3.0 26 24-49 7-33 (300)
347 PRK07993 DNA polymerase III su 93.3 0.19 4.1E-06 47.9 6.1 62 24-85 29-122 (334)
348 cd00984 DnaB_C DnaB helicase C 93.2 0.13 2.8E-06 45.4 4.6 31 24-54 18-52 (242)
349 TIGR02442 Cob-chelat-sub cobal 93.2 0.052 1.1E-06 55.9 2.3 20 24-43 30-49 (633)
350 TIGR02858 spore_III_AA stage I 93.2 0.16 3.6E-06 47.0 5.4 22 24-45 116-137 (270)
351 smart00350 MCM minichromosome 93.2 0.044 9.6E-07 54.8 1.7 62 24-85 241-314 (509)
352 PRK12339 2-phosphoglycerate ki 93.2 0.08 1.7E-06 46.7 3.2 24 24-47 8-31 (197)
353 TIGR00767 rho transcription te 93.2 0.22 4.7E-06 49.0 6.4 21 24-44 173-193 (415)
354 PRK13407 bchI magnesium chelat 93.2 0.057 1.2E-06 51.5 2.4 20 24-43 34-53 (334)
355 COG0563 Adk Adenylate kinase a 93.1 0.066 1.4E-06 46.6 2.5 27 24-52 5-31 (178)
356 TIGR01526 nadR_NMN_Atrans nico 93.1 0.078 1.7E-06 50.2 3.1 40 10-49 152-192 (325)
357 PRK05541 adenylylsulfate kinas 93.0 0.081 1.8E-06 44.7 2.9 28 24-51 12-42 (176)
358 TIGR02915 PEP_resp_reg putativ 93.0 0.41 8.9E-06 46.2 8.1 74 10-85 150-247 (445)
359 cd01121 Sms Sms (bacterial rad 93.0 0.15 3.2E-06 49.5 4.9 61 24-84 87-171 (372)
360 PRK06090 DNA polymerase III su 92.9 0.4 8.7E-06 45.6 7.7 190 24-221 30-255 (319)
361 KOG1942 DNA helicase, TBP-inte 92.9 0.045 9.8E-07 52.2 1.2 31 24-54 69-101 (456)
362 TIGR00152 dephospho-CoA kinase 92.8 0.09 1.9E-06 45.1 2.9 28 24-51 4-31 (188)
363 cd01673 dNK Deoxyribonucleosid 92.8 0.075 1.6E-06 45.4 2.4 24 25-48 5-28 (193)
364 PRK14733 coaE dephospho-CoA ki 92.8 0.097 2.1E-06 46.6 3.2 49 24-72 11-61 (204)
365 PRK00698 tmk thymidylate kinas 92.8 0.17 3.6E-06 43.3 4.6 43 25-67 9-54 (205)
366 TIGR02238 recomb_DMC1 meiotic 92.8 0.15 3.3E-06 48.1 4.6 55 14-69 84-154 (313)
367 PF08477 Miro: Miro-like prote 92.7 0.078 1.7E-06 41.1 2.2 20 25-44 5-24 (119)
368 COG0283 Cmk Cytidylate kinase 92.7 0.085 1.8E-06 47.8 2.6 59 26-84 11-85 (222)
369 PF13479 AAA_24: AAA domain 92.6 0.2 4.3E-06 44.3 4.9 57 24-85 8-82 (213)
370 PRK12608 transcription termina 92.6 0.29 6.2E-06 47.7 6.3 22 24-45 138-159 (380)
371 TIGR01448 recD_rel helicase, p 92.6 0.38 8.3E-06 50.3 7.7 77 3-83 324-428 (720)
372 PRK12338 hypothetical protein; 92.6 0.093 2E-06 49.9 3.0 23 25-47 10-32 (319)
373 cd01122 GP4d_helicase GP4d_hel 92.6 0.17 3.6E-06 45.6 4.5 31 24-54 35-69 (271)
374 PRK09825 idnK D-gluconate kina 92.6 0.19 4E-06 43.3 4.6 23 24-46 8-30 (176)
375 cd02024 NRK1 Nicotinamide ribo 92.6 0.097 2.1E-06 46.0 2.8 28 26-54 6-33 (187)
376 COG3842 PotA ABC-type spermidi 92.6 0.05 1.1E-06 52.4 1.1 37 11-47 20-59 (352)
377 smart00534 MUTSac ATPase domai 92.5 0.45 9.8E-06 40.9 6.9 62 25-86 5-93 (185)
378 PF08433 KTI12: Chromatin asso 92.5 0.2 4.4E-06 46.3 5.0 58 25-82 7-81 (270)
379 PRK13975 thymidylate kinase; P 92.5 0.15 3.2E-06 43.5 3.8 23 24-46 7-29 (196)
380 PRK13826 Dtr system oriT relax 92.5 0.35 7.6E-06 53.0 7.4 79 2-84 381-481 (1102)
381 PTZ00202 tuzin; Provisional 92.5 0.18 3.9E-06 50.6 4.8 44 24-70 291-334 (550)
382 cd03280 ABC_MutS2 MutS2 homolo 92.5 0.31 6.8E-06 42.3 5.9 63 24-86 33-123 (200)
383 cd03287 ABC_MSH3_euk MutS3 hom 92.4 0.34 7.3E-06 43.6 6.2 60 24-83 36-122 (222)
384 COG4148 ModC ABC-type molybdat 92.4 0.07 1.5E-06 50.5 1.8 37 24-60 29-65 (352)
385 TIGR00041 DTMP_kinase thymidyl 92.4 0.21 4.5E-06 42.6 4.6 27 25-51 9-38 (195)
386 PF00005 ABC_tran: ABC transpo 92.4 0.074 1.6E-06 42.6 1.7 22 24-45 16-37 (137)
387 PLN03187 meiotic recombination 92.4 0.21 4.6E-06 48.0 5.0 45 24-69 131-184 (344)
388 PRK04220 2-phosphoglycerate ki 92.4 0.16 3.5E-06 48.0 4.2 38 24-69 97-134 (301)
389 PLN02796 D-glycerate 3-kinase 92.3 0.18 3.8E-06 48.6 4.5 43 25-67 106-151 (347)
390 TIGR02322 phosphon_PhnN phosph 92.3 0.1 2.2E-06 44.1 2.5 21 25-45 7-27 (179)
391 PRK00081 coaE dephospho-CoA ki 92.3 0.13 2.8E-06 44.7 3.3 28 24-52 7-34 (194)
392 cd00878 Arf_Arl Arf (ADP-ribos 92.3 0.34 7.5E-06 39.2 5.6 19 24-42 4-22 (158)
393 PRK14730 coaE dephospho-CoA ki 92.3 0.11 2.5E-06 45.4 2.9 28 24-51 6-33 (195)
394 cd04155 Arl3 Arl3 subfamily. 92.2 0.33 7.1E-06 40.0 5.5 19 24-42 19-37 (173)
395 KOG0743 AAA+-type ATPase [Post 92.2 0.16 3.5E-06 50.4 4.1 47 131-177 389-436 (457)
396 TIGR03878 thermo_KaiC_2 KaiC d 92.2 0.14 3E-06 46.8 3.4 31 24-54 41-74 (259)
397 cd03243 ABC_MutS_homologs The 92.2 0.25 5.4E-06 42.9 4.9 62 24-85 34-122 (202)
398 PRK13973 thymidylate kinase; P 92.1 0.24 5.3E-06 43.6 4.9 42 26-67 10-54 (213)
399 PRK14021 bifunctional shikimat 92.1 0.11 2.4E-06 52.6 2.9 29 24-52 11-39 (542)
400 PRK08769 DNA polymerase III su 92.1 0.57 1.2E-05 44.5 7.6 62 24-85 31-127 (319)
401 cd00561 CobA_CobO_BtuR ATP:cor 92.1 0.34 7.4E-06 41.6 5.5 30 24-53 7-39 (159)
402 PRK06964 DNA polymerase III su 92.1 0.38 8.3E-06 46.1 6.5 22 24-45 26-47 (342)
403 COG0529 CysC Adenylylsulfate k 92.1 0.14 3E-06 45.4 3.2 31 24-54 27-61 (197)
404 PF00485 PRK: Phosphoribulokin 92.1 0.094 2E-06 45.3 2.1 20 25-44 5-24 (194)
405 TIGR00750 lao LAO/AO transport 92.0 0.17 3.6E-06 47.2 3.8 45 9-53 21-71 (300)
406 cd04160 Arfrp1 Arfrp1 subfamil 92.0 0.38 8.3E-06 39.2 5.6 19 25-43 5-23 (167)
407 PRK13951 bifunctional shikimat 92.0 0.12 2.7E-06 51.7 3.1 28 25-52 6-33 (488)
408 PRK13765 ATP-dependent proteas 92.0 0.16 3.6E-06 52.5 4.1 22 24-45 55-76 (637)
409 COG0467 RAD55 RecA-superfamily 91.9 0.28 6.1E-06 44.3 5.1 43 24-69 28-73 (260)
410 PRK00300 gmk guanylate kinase; 91.9 0.12 2.6E-06 44.5 2.6 21 24-44 10-30 (205)
411 cd01134 V_A-ATPase_A V/A-type 91.9 0.29 6.3E-06 47.5 5.4 58 24-83 162-231 (369)
412 PF05272 VirE: Virulence-assoc 91.9 0.24 5.2E-06 43.8 4.5 65 11-84 37-108 (198)
413 PF01078 Mg_chelatase: Magnesi 91.9 0.096 2.1E-06 47.0 1.9 20 24-43 27-46 (206)
414 PF00519 PPV_E1_C: Papillomavi 91.8 0.23 5E-06 48.8 4.6 63 10-79 247-315 (432)
415 PF06048 DUF927: Domain of unk 91.8 0.2 4.3E-06 46.4 4.0 57 24-84 198-255 (286)
416 PRK04841 transcriptional regul 91.8 0.57 1.2E-05 49.0 7.8 45 9-54 20-66 (903)
417 cd01853 Toc34_like Toc34-like 91.7 0.43 9.2E-06 43.6 6.1 19 24-42 36-54 (249)
418 TIGR03263 guanyl_kin guanylate 91.7 0.12 2.6E-06 43.5 2.3 24 24-47 6-29 (180)
419 PRK03846 adenylylsulfate kinas 91.7 0.17 3.8E-06 43.9 3.4 29 24-52 29-60 (198)
420 PF12780 AAA_8: P-loop contain 91.7 0.55 1.2E-05 43.5 6.8 56 24-80 36-98 (268)
421 PLN02674 adenylate kinase 91.7 0.23 4.9E-06 45.6 4.2 42 7-48 12-60 (244)
422 PTZ00035 Rad51 protein; Provis 91.7 0.41 8.9E-06 45.7 6.1 56 13-69 105-176 (337)
423 PF01583 APS_kinase: Adenylyls 91.7 0.19 4.1E-06 43.1 3.5 29 26-54 9-40 (156)
424 cd04119 RJL RJL (RabJ-Like) su 91.7 0.34 7.3E-06 39.1 4.8 19 24-42 5-23 (168)
425 PF01926 MMR_HSR1: 50S ribosom 91.6 0.11 2.5E-06 40.5 1.9 19 24-42 4-22 (116)
426 PLN03046 D-glycerate 3-kinase; 91.6 0.29 6.4E-06 48.6 5.1 46 25-70 218-266 (460)
427 PRK14731 coaE dephospho-CoA ki 91.6 0.16 3.5E-06 44.7 3.1 27 24-51 10-36 (208)
428 PRK07667 uridine kinase; Provi 91.6 0.2 4.3E-06 43.5 3.6 31 24-54 22-55 (193)
429 PRK08099 bifunctional DNA-bind 91.5 0.15 3.3E-06 49.7 3.1 24 24-47 224-247 (399)
430 PF09848 DUF2075: Uncharacteri 91.5 0.36 7.7E-06 45.8 5.5 18 26-43 8-25 (352)
431 TIGR02012 tigrfam_recA protein 91.5 0.17 3.7E-06 48.2 3.3 28 24-51 60-90 (321)
432 PRK08533 flagellar accessory p 91.4 0.36 7.7E-06 43.3 5.2 30 24-53 29-61 (230)
433 PRK00091 miaA tRNA delta(2)-is 91.4 0.16 3.5E-06 47.9 3.0 27 24-50 9-35 (307)
434 PF06745 KaiC: KaiC; InterPro 91.4 0.34 7.5E-06 42.5 5.0 44 24-70 24-71 (226)
435 TIGR00174 miaA tRNA isopenteny 91.3 0.19 4.1E-06 47.2 3.3 27 25-51 5-31 (287)
436 PRK05973 replicative DNA helic 91.3 0.35 7.6E-06 44.1 5.0 41 24-67 69-112 (237)
437 PRK05439 pantothenate kinase; 91.2 0.58 1.3E-05 44.4 6.6 56 8-63 67-135 (311)
438 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.2 0.13 2.7E-06 44.9 2.0 34 11-44 19-55 (218)
439 PRK13709 conjugal transfer nic 91.0 0.65 1.4E-05 53.1 7.7 78 3-84 968-1075(1747)
440 cd03282 ABC_MSH4_euk MutS4 hom 90.9 0.45 9.8E-06 42.1 5.2 60 24-83 34-120 (204)
441 PF03266 NTPase_1: NTPase; In 90.9 0.18 3.9E-06 43.3 2.6 22 26-47 6-30 (168)
442 cd03284 ABC_MutS1 MutS1 homolo 90.8 0.37 8.1E-06 42.8 4.7 57 24-80 35-118 (216)
443 PRK13477 bifunctional pantoate 90.8 0.18 3.8E-06 51.0 2.9 24 26-49 291-314 (512)
444 TIGR02031 BchD-ChlD magnesium 90.7 0.27 5.8E-06 50.3 4.1 59 24-85 21-98 (589)
445 COG0237 CoaE Dephospho-CoA kin 90.7 0.22 4.7E-06 44.3 3.0 25 26-51 9-33 (201)
446 cd04139 RalA_RalB RalA/RalB su 90.7 0.58 1.2E-05 37.7 5.3 18 24-41 5-22 (164)
447 PF13481 AAA_25: AAA domain; P 90.7 0.15 3.3E-06 43.2 1.9 20 24-43 37-56 (193)
448 PF06431 Polyoma_lg_T_C: Polyo 90.7 0.39 8.4E-06 46.9 4.9 54 26-84 162-215 (417)
449 PLN02459 probable adenylate ki 90.6 0.21 4.5E-06 46.3 2.9 26 24-49 34-59 (261)
450 PRK14529 adenylate kinase; Pro 90.6 0.17 3.6E-06 45.8 2.2 25 24-48 5-29 (223)
451 cd03114 ArgK-like The function 90.6 0.26 5.7E-06 41.3 3.3 29 25-53 5-36 (148)
452 TIGR00455 apsK adenylylsulfate 90.6 0.26 5.6E-06 42.0 3.3 35 18-52 14-54 (184)
453 TIGR03608 L_ocin_972_ABC putat 90.5 0.16 3.5E-06 43.7 2.0 21 24-44 29-49 (206)
454 cd03292 ABC_FtsE_transporter F 90.5 0.16 3.5E-06 44.0 2.0 20 25-44 33-52 (214)
455 TIGR00416 sms DNA repair prote 90.4 0.4 8.7E-06 47.5 4.9 61 24-84 99-183 (454)
456 PF08298 AAA_PrkA: PrkA AAA do 90.4 0.54 1.2E-05 45.5 5.6 31 24-54 93-124 (358)
457 KOG3354 Gluconate kinase [Carb 90.3 0.17 3.7E-06 44.2 1.9 26 26-51 19-44 (191)
458 cd03269 ABC_putative_ATPase Th 90.3 0.17 3.7E-06 43.9 2.0 20 25-44 32-51 (210)
459 cd03264 ABC_drug_resistance_li 90.3 0.17 3.7E-06 43.9 2.0 20 25-44 31-50 (211)
460 PLN02748 tRNA dimethylallyltra 90.2 0.2 4.4E-06 50.0 2.7 28 24-51 27-54 (468)
461 PRK05917 DNA polymerase III su 90.2 1.2 2.5E-05 42.0 7.6 80 6-85 4-109 (290)
462 cd01854 YjeQ_engC YjeQ/EngC. 90.2 0.27 5.8E-06 45.6 3.3 39 12-50 152-192 (287)
463 cd03262 ABC_HisP_GlnQ_permease 90.2 0.18 3.8E-06 43.7 2.0 21 24-44 31-51 (213)
464 cd03239 ABC_SMC_head The struc 90.1 0.88 1.9E-05 39.2 6.3 22 24-45 27-48 (178)
465 cd03258 ABC_MetN_methionine_tr 90.1 0.18 3.8E-06 44.5 2.0 34 11-44 20-56 (233)
466 cd03236 ABC_RNaseL_inhibitor_d 90.1 0.14 3.1E-06 46.6 1.4 35 10-45 15-52 (255)
467 TIGR00176 mobB molybdopterin-g 90.1 0.32 6.9E-06 41.2 3.4 29 25-53 5-36 (155)
468 TIGR01166 cbiO cobalt transpor 90.0 0.18 4E-06 43.0 1.9 34 11-44 7-43 (190)
469 TIGR02673 FtsE cell division A 90.0 0.18 4E-06 43.7 2.0 34 11-44 17-53 (214)
470 TIGR02211 LolD_lipo_ex lipopro 90.0 0.19 4E-06 43.9 2.0 35 11-45 20-57 (221)
471 cd03225 ABC_cobalt_CbiO_domain 90.0 0.21 4.5E-06 43.3 2.2 34 11-44 16-52 (211)
472 PF04665 Pox_A32: Poxvirus A32 90.0 0.41 8.8E-06 43.9 4.2 22 24-45 18-39 (241)
473 PRK00771 signal recognition pa 90.0 0.59 1.3E-05 46.3 5.7 31 24-54 100-133 (437)
474 PRK06067 flagellar accessory p 90.0 0.33 7.2E-06 43.0 3.6 31 24-54 30-63 (234)
475 PRK05537 bifunctional sulfate 90.0 0.43 9.4E-06 48.7 4.8 44 9-52 375-429 (568)
476 PRK04296 thymidine kinase; Pro 90.0 0.28 6.2E-06 42.5 3.1 28 24-51 7-37 (190)
477 cd03260 ABC_PstB_phosphate_tra 89.9 0.2 4.4E-06 43.9 2.2 19 25-43 32-50 (227)
478 PF06414 Zeta_toxin: Zeta toxi 89.9 0.24 5.3E-06 42.9 2.6 31 24-54 20-51 (199)
479 cd03229 ABC_Class3 This class 89.9 0.2 4.3E-06 42.6 2.0 20 25-44 32-51 (178)
480 PRK14712 conjugal transfer nic 89.9 0.9 1.9E-05 51.6 7.5 77 3-83 836-942 (1623)
481 TIGR03881 KaiC_arch_4 KaiC dom 89.8 0.32 7E-06 42.7 3.4 30 24-53 25-57 (229)
482 TIGR02315 ABC_phnC phosphonate 89.8 0.19 4.2E-06 44.4 2.0 34 11-44 17-53 (243)
483 TIGR00991 3a0901s02IAP34 GTP-b 89.8 1.9 4.1E-05 41.1 8.7 79 3-83 16-131 (313)
484 TIGR03410 urea_trans_UrtE urea 89.8 0.19 4.1E-06 44.2 1.9 34 11-44 15-51 (230)
485 TIGR00960 3a0501s02 Type II (G 89.8 0.2 4.2E-06 43.7 1.9 34 11-44 18-54 (216)
486 PRK13768 GTPase; Provisional 89.8 0.32 6.9E-06 44.3 3.4 30 25-54 8-40 (253)
487 cd03261 ABC_Org_Solvent_Resist 89.7 0.2 4.3E-06 44.3 2.0 21 24-44 31-51 (235)
488 cd02034 CooC The accessory pro 89.7 0.38 8.2E-06 38.8 3.4 30 24-53 4-36 (116)
489 cd03256 ABC_PhnC_transporter A 89.7 0.2 4.3E-06 44.3 2.0 34 11-44 16-52 (241)
490 TIGR00554 panK_bact pantothena 89.7 0.91 2E-05 42.6 6.4 53 10-62 45-110 (290)
491 cd00879 Sar1 Sar1 subfamily. 89.7 0.87 1.9E-05 38.2 5.8 31 11-41 9-41 (190)
492 cd00071 GMPK Guanosine monopho 89.6 0.29 6.3E-06 40.3 2.7 22 25-46 5-26 (137)
493 cd02030 NDUO42 NADH:Ubiquinone 89.6 0.28 6.1E-06 43.4 2.8 24 26-49 6-29 (219)
494 cd04106 Rab23_lke Rab23-like s 89.6 0.62 1.3E-05 37.7 4.7 18 24-41 5-22 (162)
495 cd03293 ABC_NrtD_SsuB_transpor 89.6 0.21 4.5E-06 43.7 2.0 34 11-44 19-55 (220)
496 PLN03186 DNA repair protein RA 89.6 0.51 1.1E-05 45.3 4.7 45 24-69 128-181 (342)
497 PRK13808 adenylate kinase; Pro 89.6 0.26 5.7E-06 47.2 2.7 27 24-50 5-31 (333)
498 TIGR02239 recomb_RAD51 DNA rep 89.6 0.51 1.1E-05 44.6 4.7 45 24-69 101-154 (316)
499 COG1120 FepC ABC-type cobalami 89.5 0.22 4.7E-06 46.2 2.1 34 12-45 18-54 (258)
500 cd00882 Ras_like_GTPase Ras-li 89.5 0.23 5E-06 37.9 2.0 20 25-44 2-21 (157)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-46 Score=356.46 Aligned_cols=182 Identities=42% Similarity=0.631 Sum_probs=151.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCcccc--------------ccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHH
Q 024362 1 MAVDFDVKKMIMDDLEMFLKRKDFH--------------RRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLL 66 (268)
Q Consensus 1 viLd~~~K~~i~~Di~~Fl~~~~~Y--------------~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf 66 (268)
|+||++.|++|++|+..|+++++|| |||||||||||+||||+|+||||.|+|++ +.++++|++|+
T Consensus 203 laMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~-v~~n~dLr~LL 281 (457)
T KOG0743|consen 203 LAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE-VKLDSDLRHLL 281 (457)
T ss_pred cccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc-ccCcHHHHHHH
Confidence 6899999999999999999999874 88899999999999999999999999999 77788899999
Q ss_pred HhcCCCeeEEEeCCccchhhhhhhhhhcC---CCCceee----eee---------------------------cccCCCC
Q 024362 67 IATENKSLLVVEDIDCSIELQNRHAQALA---VNPMVSN----MNY---------------------------TARPGIN 112 (268)
Q Consensus 67 ~~~p~~~IiliEDID~~~~~~~R~~~~~~---~~~~~vT----LN~---------------------------kiRPGRv 112 (268)
..+|++||||||||||++..+.|...... ...+.|| ||+ +||||||
T Consensus 282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 99999999999999999997777655321 1235566 666 2999999
Q ss_pred cccc-------ccccccccccCCCchhhHHHHHHhhhcCCCChHHHHHHhhcCCCHHHHHhhhHHHhhhhhhHHHHHHhc
Q 024362 113 QGPQ-------VGSKCWAPTTLESEHPFSLEIEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFLKNKKREQEVEELT 185 (268)
Q Consensus 113 D~~I-------~~f~~~a~~y~~~~~~lf~~i~~~~~~~~~tpAei~~~l~~~~d~~~al~~~~~~Lk~h~l~~eIe~li 185 (268)
|||| .+|+.|+++|++. -++|.+|++|++++
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~------------------------------------------~~~h~L~~eie~l~ 399 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGI------------------------------------------EEDHRLFDEIERLI 399 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCC------------------------------------------CCCcchhHHHHHHh
Confidence 9999 2333334444331 01466778888999
Q ss_pred cccCCChHHHhhhhcCCC-CHHHHHHHHHHHHHHHHHhccc
Q 024362 186 EKVMVTPADVAERLMRSE-VPEVALRDLIDFLKIKKREQGE 225 (268)
Q Consensus 186 ~e~~~SPAEVqg~Ll~k~-dp~~Al~~l~~wl~~~~~~k~~ 225 (268)
.+..+|||||||+||+++ |++.||++|+++|+.++.+.++
T Consensus 400 ~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 400 EETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred hcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999766 8999999999999998876555
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-18 Score=168.04 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhcCcccc--------------ccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHH
Q 024362 6 DVKKMIMDDLEMFLKRKDFH--------------RRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLL 66 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~~Y--------------~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf 66 (268)
+.|+++ ..|-+||+..+-| ||||||||-|++|+||+.|.++|..+.|++ +.....+++||
T Consensus 311 EAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF 389 (752)
T KOG0734|consen 311 EAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLF 389 (752)
T ss_pred HHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHH
Confidence 445555 7889999987644 789999999999999999999999999986 46779999999
Q ss_pred HhcC--CCeeEEEeCCccchhhhhhhhhhc--------------C--CCCceee----eee-------cccCCCCcccc-
Q 024362 67 IATE--NKSLLVVEDIDCSIELQNRHAQAL--------------A--VNPMVSN----MNY-------TARPGINQGPQ- 116 (268)
Q Consensus 67 ~~~p--~~~IiliEDID~~~~~~~R~~~~~--------------~--~~~~~vT----LN~-------kiRPGRvD~~I- 116 (268)
..+. .||||+|||||++|. .|..... + .+..+|- +|+ ++||||+|+||
T Consensus 390 ~aAk~~APcIIFIDEiDavG~--kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 390 AAAKARAPCIIFIDEIDAVGG--KRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVT 467 (752)
T ss_pred HHHHhcCCeEEEEechhhhcc--cCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEe
Confidence 9875 599999999999997 3433221 1 1223333 777 39999999999
Q ss_pred ------ccccccccccCCC---chhhHHHHHHhhh-cCCCChHHHHHHhh
Q 024362 117 ------VGSKCWAPTTLES---EHPFSLEIEELTE-KVMVTPADVAERLM 156 (268)
Q Consensus 117 ------~~f~~~a~~y~~~---~~~lf~~i~~~~~-~~~~tpAei~~~l~ 156 (268)
-+...+...|+.. +.+.-..|- .. ..+||.||+.++..
T Consensus 468 Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~ii--ARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 468 VPLPDVRGRTEILKLYLSKIPLDEDVDPKII--ARGTPGFSGADLANLVN 515 (752)
T ss_pred cCCCCcccHHHHHHHHHhcCCcccCCCHhHh--ccCCCCCchHHHHHHHH
Confidence 2333344445431 111111111 12 34789999988764
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-17 Score=157.11 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---c--ChHHHHHHH
Q 024362 6 DVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---R--GNMELRNLL 66 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~--~d~~L~~lf 66 (268)
+|.++|-.=++..|...+ .|||||||||-|++|+|++.+..|..+..|+.+ . ..--.+++|
T Consensus 158 ~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF 237 (406)
T COG1222 158 EQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELF 237 (406)
T ss_pred HHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHH
Confidence 566777777777666543 699999999999999999999999999999853 2 334468999
Q ss_pred HhcC--CCeeEEEeCCccchhhhhhhhhhcC------------------C-CCceee--eee-------cccCCCCcccc
Q 024362 67 IATE--NKSLLVVEDIDCSIELQNRHAQALA------------------V-NPMVSN--MNY-------TARPGINQGPQ 116 (268)
Q Consensus 67 ~~~p--~~~IiliEDID~~~~~~~R~~~~~~------------------~-~~~~vT--LN~-------kiRPGRvD~~I 116 (268)
.-+. .||||||||||+++..+.....+++ + ++-+|- +|. .+||||+|++|
T Consensus 238 ~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkI 317 (406)
T COG1222 238 ELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKI 317 (406)
T ss_pred HHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccccee
Confidence 8775 5999999999999973322221111 1 111222 565 39999999999
Q ss_pred cccc------------ccccccCCCchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 117 VGSK------------CWAPTTLESEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 117 ~~f~------------~~a~~y~~~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
.|- .+++.-.-...--|..+.... .++|.||+.+.+.
T Consensus 318 -EfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~--~g~sGAdlkaict 366 (406)
T COG1222 318 -EFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLT--EGFSGADLKAICT 366 (406)
T ss_pred -ecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhc--CCCchHHHHHHHH
Confidence 555 111110001111244444433 3689999887553
No 4
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-17 Score=168.11 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhhcCcccc--------------ccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKDFH--------------RRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~~Y--------------~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
++.|++| ..+-.||++.+-| ||||||||.||+|+||+-|++++.++.|++ +...+..++|
T Consensus 317 deAK~El-~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l 395 (774)
T KOG0731|consen 317 DEAKEEL-MEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL 395 (774)
T ss_pred HHHHHHH-HHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHH
Confidence 4567766 7788899887644 789999999999999999999999999996 3578999999
Q ss_pred HHhcCC--CeeEEEeCCccchhhhhhhh----hhc--------------C--CCCceee----eee-------cccCCCC
Q 024362 66 LIATEN--KSLLVVEDIDCSIELQNRHA----QAL--------------A--VNPMVSN----MNY-------TARPGIN 112 (268)
Q Consensus 66 f~~~p~--~~IiliEDID~~~~~~~R~~----~~~--------------~--~~~~~vT----LN~-------kiRPGRv 112 (268)
|..... ||||+|||||+++- .|.. ..+ + ....+|- +|. .+||||+
T Consensus 396 f~~ar~~aP~iifideida~~~--~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRf 473 (774)
T KOG0731|consen 396 FPLARKNAPSIIFIDEIDAVGR--KRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRF 473 (774)
T ss_pred HHHhhccCCeEEEecccccccc--cccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCcc
Confidence 999864 99999999999986 3321 011 0 1122232 554 3999999
Q ss_pred cccc-----------ccccccccccC-CCchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 113 QGPQ-----------VGSKCWAPTTL-ESEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 113 D~~I-----------~~f~~~a~~y~-~~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
|++| +.|+.+++.-. ..+...+..+..+ ...+|+|+|.+++.
T Consensus 474 dr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~--t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 474 DRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASL--TPGFSGADLANLCN 527 (774)
T ss_pred ccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhc--CCCCcHHHHHhhhh
Confidence 9999 33333333211 1111222334443 34799999998765
No 5
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.5e-15 Score=152.29 Aligned_cols=146 Identities=22% Similarity=0.203 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
++.|+++ ..+-+||+... |++|||||||.|++|+||+.+.+++.+|.|++ +...+..|+|
T Consensus 156 dEakeel-~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdL 234 (596)
T COG0465 156 DEAKEEL-SELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDL 234 (596)
T ss_pred HHHHHHH-HHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHH
Confidence 4566665 55667776432 78999999999999999999999999999996 3688999999
Q ss_pred HHhcCC--CeeEEEeCCccchhhhhhhhhhc-----------------C--CCCceee----eee-------cccCCCCc
Q 024362 66 LIATEN--KSLLVVEDIDCSIELQNRHAQAL-----------------A--VNPMVSN----MNY-------TARPGINQ 113 (268)
Q Consensus 66 f~~~p~--~~IiliEDID~~~~~~~R~~~~~-----------------~--~~~~~vT----LN~-------kiRPGRvD 113 (268)
|....+ ||||+|||||+.+. .|....+ + ..+.+|- +|. ++||||+|
T Consensus 235 F~qAkk~aP~IIFIDEiDAvGr--~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFD 312 (596)
T COG0465 235 FEQAKKNAPCIIFIDEIDAVGR--QRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFD 312 (596)
T ss_pred HHHhhccCCCeEEEehhhhccc--ccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcc
Confidence 999875 99999999999997 4432211 1 1112222 444 49999999
Q ss_pred ccc----c---c----cccccccc-CCCchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 114 GPQ----V---G----SKCWAPTT-LESEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 114 ~~I----~---~----f~~~a~~y-~~~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
++| . + .+.++++- +..+.+ +..+.... .+++.|++.+++.
T Consensus 313 RqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-l~~iAr~t--pGfsGAdL~nl~N 364 (596)
T COG0465 313 RQILVELPDIKGREQILKVHAKNKPLAEDVD-LKKIARGT--PGFSGADLANLLN 364 (596)
T ss_pred eeeecCCcchhhHHHHHHHHhhcCCCCCcCC-HHHHhhhC--CCcccchHhhhHH
Confidence 999 1 1 11222211 111222 23344433 4688999988774
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.1e-15 Score=149.09 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhhcCc-----------c---ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRK-----------D---FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~-----------~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
+++|.+|-.-+..-++.. . +|||||||||++++|+|++-++++..+++.+. +-++..++.+
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 456776666665544332 1 89999999999999999999999999987762 3577889999
Q ss_pred HHhcC--CCeeEEEeCCccchhhhhhhhhhcC----------------CCCceee----eee-------cccCCCCcccc
Q 024362 66 LIATE--NKSLLVVEDIDCSIELQNRHAQALA----------------VNPMVSN----MNY-------TARPGINQGPQ 116 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~~~~R~~~~~~----------------~~~~~vT----LN~-------kiRPGRvD~~I 116 (268)
|.++. .||||++||||+... .|.....+ .....|. +|. .+||||+|..|
T Consensus 520 F~kAR~~aP~IiFfDEiDsi~~--~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ii 597 (693)
T KOG0730|consen 520 FRKARQVAPCIIFFDEIDALAG--SRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRII 597 (693)
T ss_pred HHHHhhcCCeEEehhhHHhHhh--ccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeE
Confidence 99875 379999999999986 55322211 0112333 343 29999999999
Q ss_pred -----------ccccccccccC-CCchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 117 -----------VGSKCWAPTTL-ESEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 117 -----------~~f~~~a~~y~-~~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
..|++.++... +.+ -.+.++... ...+|.|||.+++.
T Consensus 598 yVplPD~~aR~~Ilk~~~kkmp~~~~-vdl~~La~~--T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 598 YVPLPDLEARLEILKQCAKKMPFSED-VDLEELAQA--TEGYSGAEIVAVCQ 646 (693)
T ss_pred eecCccHHHHHHHHHHHHhcCCCCcc-ccHHHHHHH--hccCChHHHHHHHH
Confidence 22333332211 111 112333322 34799999988764
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.4e-15 Score=154.48 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhhcCcc-------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD-------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLL 66 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf 66 (268)
+++|.+|++-|+..|...+ +|||||||||-||+|+|-++++++..+...+. +.+++.+|++|
T Consensus 678 eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 678 EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVF 757 (953)
T ss_pred HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHH
Confidence 5789999999987554321 89999999999999999999999999988774 56899999999
Q ss_pred HhcC--CCeeEEEeCCccchhhhhhhhh
Q 024362 67 IATE--NKSLLVVEDIDCSIELQNRHAQ 92 (268)
Q Consensus 67 ~~~p--~~~IiliEDID~~~~~~~R~~~ 92 (268)
.++. .||||++||||+....++|..+
T Consensus 758 erAR~A~PCVIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred HHhhccCCeEEEeccccccCccCCCCCC
Confidence 9986 5999999999999884444433
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.2e-14 Score=141.94 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=57.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHA 91 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~ 91 (268)
+|||||||||+|+.||||++++++|.|+.++. +-++..+++||..+. .||||+|||||+++. .|+.
T Consensus 228 lHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~p--kRe~ 300 (802)
T KOG0733|consen 228 LHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITP--KREE 300 (802)
T ss_pred eeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeeccccccc--chhh
Confidence 57999999999999999999999999998773 347789999999986 499999999999987 4543
No 9
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.3e-14 Score=141.22 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=93.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhhhhcC-
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHAQALA- 95 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~~- 95 (268)
.||+||||||.|+-|+|...++.|+.+...+. +.++...|.+|.++. .|||+++||.|+... .|+.++.+
T Consensus 706 LyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP--kRGhDsTGV 783 (952)
T KOG0735|consen 706 LYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP--KRGHDSTGV 783 (952)
T ss_pred EECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--ccCCCCCCc
Confidence 69999999999999999999999999988773 568899999999875 699999999999987 55544321
Q ss_pred ---------------CCCceee-eee----------cccCCCCcccc-----------ccccccccccCCCchhhHHHHH
Q 024362 96 ---------------VNPMVSN-MNY----------TARPGINQGPQ-----------VGSKCWAPTTLESEHPFSLEIE 138 (268)
Q Consensus 96 ---------------~~~~~vT-LN~----------kiRPGRvD~~I-----------~~f~~~a~~y~~~~~~lf~~i~ 138 (268)
++-.+|+ |-+ ++||||+|+.| ..++.+.+.++-.+.-.|.-++
T Consensus 784 TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 784 TDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred hHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 1222343 333 39999999999 2222333333222333344444
Q ss_pred HhhhcCCCChHHHHHHhh
Q 024362 139 ELTEKVMVTPADVAERLM 156 (268)
Q Consensus 139 ~~~~~~~~tpAei~~~l~ 156 (268)
.. ..++|.||+|.+|-
T Consensus 864 ~~--T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 864 QK--TDGFTGADLQSLLY 879 (952)
T ss_pred hh--cCCCchhhHHHHHH
Confidence 43 34799999999875
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-13 Score=137.12 Aligned_cols=132 Identities=18% Similarity=0.116 Sum_probs=93.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhhhhc--
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHAQAL-- 94 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~-- 94 (268)
.|||||||||-|++|+||+-|++|..+...+. +-++-.++.+|+.+. .||||++||||+....++.+....
T Consensus 550 L~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~ 629 (802)
T KOG0733|consen 550 LCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSS 629 (802)
T ss_pred EeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHH
Confidence 58999999999999999999999999987763 236677899999885 599999999999876322221110
Q ss_pred ----------C--CCCceee----eee-------cccCCCCcccc-----------ccccccccccCC--CchhhHHHHH
Q 024362 95 ----------A--VNPMVSN----MNY-------TARPGINQGPQ-----------VGSKCWAPTTLE--SEHPFSLEIE 138 (268)
Q Consensus 95 ----------~--~~~~~vT----LN~-------kiRPGRvD~~I-----------~~f~~~a~~y~~--~~~~lf~~i~ 138 (268)
+ ....+|+ +|. -+||||+|... ...+.+.++... ...--|.+|.
T Consensus 630 RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 630 RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 1 1234555 555 29999999987 222344444222 2223467777
Q ss_pred HhhhcCCCChHHHHHHh
Q 024362 139 ELTEKVMVTPADVAERL 155 (268)
Q Consensus 139 ~~~~~~~~tpAei~~~l 155 (268)
....-.+||.||+..+.
T Consensus 710 ~~~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALV 726 (802)
T ss_pred hcccccCCchhhHHHHH
Confidence 76665689999998654
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.6e-14 Score=133.03 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---cCh--HHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---RGN--MELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~~d--~~L~~l 65 (268)
+.+.++|...++..|...+ .|+.||||||-|++|+||.....|..+-.|+.. +.| .-.+.|
T Consensus 191 e~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRql 270 (440)
T KOG0726|consen 191 ESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVREL 270 (440)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHH
Confidence 4567788888887776554 478999999999999999999999988887742 222 345888
Q ss_pred HHhcC--CCeeEEEeCCccchhhhhhhhhhcC---------------------CCCceee--eee-------cccCCCCc
Q 024362 66 LIATE--NKSLLVVEDIDCSIELQNRHAQALA---------------------VNPMVSN--MNY-------TARPGINQ 113 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~~~~R~~~~~~---------------------~~~~~vT--LN~-------kiRPGRvD 113 (268)
|+-+. .+|||+|||||+++- .|-...++ .++-+|- +|. +|||||||
T Consensus 271 F~vA~e~apSIvFiDEIdAiGt--KRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrID 348 (440)
T KOG0726|consen 271 FRVAEEHAPSIVFIDEIDAIGT--KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRID 348 (440)
T ss_pred HHHHHhcCCceEEeehhhhhcc--ccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccc
Confidence 88764 599999999999996 33222110 0111222 444 39999999
Q ss_pred ccccccc
Q 024362 114 GPQVGSK 120 (268)
Q Consensus 114 ~~I~~f~ 120 (268)
++| .|.
T Consensus 349 rKI-ef~ 354 (440)
T KOG0726|consen 349 RKI-EFP 354 (440)
T ss_pred ccc-ccC
Confidence 999 776
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-13 Score=126.82 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=71.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhhhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHAQALAV 96 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~~~ 96 (268)
.|+|||||||-|+.|+|-+..+.++.+|.|+.+ -.....+.||--+. .||||++||||+++. .|...+.+
T Consensus 186 LygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs--~r~e~~~g- 262 (404)
T KOG0728|consen 186 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--SRVESGSG- 262 (404)
T ss_pred EecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccc--ccccCCCC-
Confidence 799999999999999999999999999999853 23355688887765 499999999999998 55443321
Q ss_pred CCceee------------------------eee-------cccCCCCcccccccc
Q 024362 97 NPMVSN------------------------MNY-------TARPGINQGPQVGSK 120 (268)
Q Consensus 97 ~~~~vT------------------------LN~-------kiRPGRvD~~I~~f~ 120 (268)
+++.|- +|. ++||||||++| .|-
T Consensus 263 gdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki-efp 316 (404)
T KOG0728|consen 263 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI-EFP 316 (404)
T ss_pred ccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc-cCC
Confidence 222221 333 39999999999 775
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.43 E-value=3.8e-13 Score=133.04 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=53.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|||||||||++++|||+.+++++|.++.+.. +.++..++.+|..+ ..||||+|||||.++.
T Consensus 264 L~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 264 LVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332 (489)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc
Confidence 79999999999999999999999999997652 24567889999854 4699999999999875
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.42 E-value=5.9e-13 Score=128.64 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-+.+|++|..-+..++...+ +|||||||||+|+.|+|+.++.+++.++.+.. +.+...++.
T Consensus 150 l~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~ 229 (398)
T PTZ00454 150 LDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRD 229 (398)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHH
Confidence 35678888888877665432 58999999999999999999999999876552 123456778
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..||||+|||||+++.
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhcc
Confidence 88765 4689999999999875
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.42 E-value=5.5e-13 Score=131.48 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELR 63 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~ 63 (268)
-.+..|++|.. +-.|+.... +|||||||||+|++|||+.++++++.++.++. +.+...++
T Consensus 59 g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~ 137 (495)
T TIGR01241 59 GIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVR 137 (495)
T ss_pred CHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHH
Confidence 34567777654 444554321 68999999999999999999999999997753 24567899
Q ss_pred HHHHhcC--CCeeEEEeCCccchh
Q 024362 64 NLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 64 ~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.+|..+. .||||+|||||+++.
T Consensus 138 ~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 138 DLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred HHHHHHHhcCCCEEEEechhhhhh
Confidence 9998864 589999999999976
No 16
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.41 E-value=1.9e-12 Score=124.14 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=54.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC-------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE-------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p-------~~~IiliEDID~~~~ 85 (268)
.|||||||||.+|.|||+.+|.+++.++.++. +-++..++.+|..+. .+|||+|||||+.+.
T Consensus 153 L~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g 226 (413)
T PLN00020 153 IWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG 226 (413)
T ss_pred eeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC
Confidence 79999999999999999999999999998773 245688999998764 599999999999875
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.41 E-value=1.8e-12 Score=133.50 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-+..|+.|...+...+...+ +|||||||||+|++|+|+.++.+++.++.++. +.++..++.
T Consensus 458 ~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~ 537 (733)
T TIGR01243 458 LEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIRE 537 (733)
T ss_pred HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHH
Confidence 35677777777665444321 69999999999999999999999999987652 245678999
Q ss_pred HHHhcC--CCeeEEEeCCccchh
Q 024362 65 LLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~p--~~~IiliEDID~~~~ 85 (268)
+|..+. .+|||+|||||+.+.
T Consensus 538 ~f~~A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 538 IFRKARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred HHHHHHhcCCEEEEEEChhhhhc
Confidence 998764 589999999999876
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.9e-13 Score=123.40 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=54.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.|||||||||-|++|+|++....++.+..|+++ -.....+++|.-+. .|+||+|||||++..
T Consensus 194 lygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 194 LYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred EeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh
Confidence 699999999999999999999999999999863 35577899998764 599999999999875
No 19
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.35 E-value=5.8e-13 Score=132.28 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcE--------EEEecccc-------c
Q 024362 6 DVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDV--------YDLELSAL-------L 56 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~i--------y~l~ls~~-------~ 56 (268)
.+++.|..-+...+...+ +|||||||||++++|+|+.++.++ +.+++... +
T Consensus 189 ~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvG 268 (512)
T TIGR03689 189 SQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVG 268 (512)
T ss_pred HHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccc
Confidence 456666666655333221 689999999999999999998763 33333211 1
Q ss_pred cChHHHHHHHHhcC------CCeeEEEeCCccchhhhhhhhhhc---------------C--CCCceee----eee----
Q 024362 57 RGNMELRNLLIATE------NKSLLVVEDIDCSIELQNRHAQAL---------------A--VNPMVSN----MNY---- 105 (268)
Q Consensus 57 ~~d~~L~~lf~~~p------~~~IiliEDID~~~~~~~R~~~~~---------------~--~~~~~vT----LN~---- 105 (268)
.+...++.+|..+. .+|||||||||+.+. .|..... + ....+|. +|.
T Consensus 269 ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~--~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~L 346 (512)
T TIGR03689 269 ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR--TRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMI 346 (512)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc--ccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhC
Confidence 23456777877653 589999999999875 3322100 0 0112222 676
Q ss_pred ---cccCCCCcccccccc
Q 024362 106 ---TARPGINQGPQVGSK 120 (268)
Q Consensus 106 ---kiRPGRvD~~I~~f~ 120 (268)
.+||||+|++| .|.
T Consensus 347 DpALlRpGRfD~~I-~~~ 363 (512)
T TIGR03689 347 DPAILRPGRLDVKI-RIE 363 (512)
T ss_pred CHhhcCccccceEE-EeC
Confidence 29999999999 655
No 20
>CHL00176 ftsH cell division protein; Validated
Probab=99.34 E-value=1.6e-12 Score=132.29 Aligned_cols=80 Identities=19% Similarity=0.338 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
++.|+++ .++..|+.... +|||||||||+|++|+|++++.+++.++.+.. +.....++.+
T Consensus 189 ~~~k~~l-~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~l 267 (638)
T CHL00176 189 EEAKEEF-EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDL 267 (638)
T ss_pred HHHHHHH-HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHH
Confidence 4555554 56666666432 68999999999999999999999999988763 2245678889
Q ss_pred HHhcC--CCeeEEEeCCccchh
Q 024362 66 LIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~ 85 (268)
|..+. .+|||+|||||+.+.
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGR 289 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhh
Confidence 98864 589999999999875
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.34 E-value=4e-12 Score=122.17 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+.++++|..-+..++.... .|||||||||++++|+|+.++.+++.++.+... .+...++.+
T Consensus 137 ~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 216 (389)
T PRK03992 137 EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVREL 216 (389)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHH
Confidence 4567777777766554421 599999999999999999999999999877631 234567788
Q ss_pred HHhcC--CCeeEEEeCCccchh
Q 024362 66 LIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~ 85 (268)
|..+. .+|||+|||||+.+.
T Consensus 217 f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 217 FELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred HHHHHhcCCeEEEEechhhhhc
Confidence 87654 589999999999875
No 22
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.31 E-value=3.4e-12 Score=139.71 Aligned_cols=129 Identities=9% Similarity=0.015 Sum_probs=82.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc-------------C--------------------------------
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR-------------G-------------------------------- 58 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~-------------~-------------------------------- 58 (268)
.|||||||||.||+|||+..+++++.+++++... +
T Consensus 1635 LiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~ 1714 (2281)
T CHL00206 1635 VIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMP 1714 (2281)
T ss_pred EECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhh
Confidence 7999999999999999999999999999987431 0
Q ss_pred ---hHHHHHHHHhc--CCCeeEEEeCCccchhhhhhhhh--------hcC---CCCcee-e---eee-------cccCCC
Q 024362 59 ---NMELRNLLIAT--ENKSLLVVEDIDCSIELQNRHAQ--------ALA---VNPMVS-N---MNY-------TARPGI 111 (268)
Q Consensus 59 ---d~~L~~lf~~~--p~~~IiliEDID~~~~~~~R~~~--------~~~---~~~~~v-T---LN~-------kiRPGR 111 (268)
...++.+|..+ -.||||+|||||+.+....+... ++. ....+| . +|. .+||||
T Consensus 1715 ~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGR 1794 (2281)
T CHL00206 1715 KIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNK 1794 (2281)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCC
Confidence 01256777766 46999999999999863221110 001 112233 2 676 399999
Q ss_pred Ccccccccc------------ccc---cccCCCchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 112 NQGPQVGSK------------CWA---PTTLESEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 112 vD~~I~~f~------------~~a---~~y~~~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
+|++| ... .+. ..++......+..++.. ..++|+||+.+++
T Consensus 1795 FDR~I-~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLv 1850 (2281)
T CHL00206 1795 LNTCI-KIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALT 1850 (2281)
T ss_pred CCeEE-EeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHH
Confidence 99999 222 111 11221111123444443 3478999998764
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.7e-12 Score=122.51 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=71.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhhhhc--
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHAQAL-- 94 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~-- 94 (268)
+|||||||||.|++|+|++++.+++.++.++. +.+...++.+|..+. .+|||+|||||+.+. .|.....
T Consensus 281 l~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~--~r~~~~~~~ 358 (494)
T COG0464 281 LYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS--GRGPSEDGS 358 (494)
T ss_pred EECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc--cCCCCCchH
Confidence 89999999999999999999999999998862 235688999999886 699999999999987 3332211
Q ss_pred ------------C--CCCceee----eee-------cccCCCCcccc
Q 024362 95 ------------A--VNPMVSN----MNY-------TARPGINQGPQ 116 (268)
Q Consensus 95 ------------~--~~~~~vT----LN~-------kiRPGRvD~~I 116 (268)
+ ...+.|- +|. .+||||+|..|
T Consensus 359 ~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i 405 (494)
T COG0464 359 GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLI 405 (494)
T ss_pred HHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEe
Confidence 0 1122222 666 29999999999
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.29 E-value=5e-12 Score=123.64 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=50.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.|+|+.++.+++.++.++.. .+...++.+|..+ ..+|||+|||||+++.
T Consensus 222 L~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 222 LYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 589999999999999999999999999876631 2334477787765 4589999999999875
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.2e-12 Score=116.30 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=70.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhcC--CCeeEEEeCCccchhhhhhhhhhc--
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIATE--NKSLLVVEDIDCSIELQNRHAQAL-- 94 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~-- 94 (268)
.|+|||||||.++.|+||..+.-++.+-.|+.+ -....++.||.-+. .-|||++||||+++-.+......+
T Consensus 216 lygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdn 295 (435)
T KOG0729|consen 216 LYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDN 295 (435)
T ss_pred EeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcH
Confidence 699999999999999999999999998887743 24466799998764 689999999999986332221111
Q ss_pred ----------------CC-CCceee--eee-------cccCCCCcccccccc
Q 024362 95 ----------------AV-NPMVSN--MNY-------TARPGINQGPQVGSK 120 (268)
Q Consensus 95 ----------------~~-~~~~vT--LN~-------kiRPGRvD~~I~~f~ 120 (268)
++ ++-+|- +|. ++||||+|++| .|+
T Consensus 296 evqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkv-ef~ 346 (435)
T KOG0729|consen 296 EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKV-EFG 346 (435)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccce-ecc
Confidence 01 111222 454 39999999999 776
No 26
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.1e-12 Score=117.86 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=51.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---c--ChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---R--GNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~--~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.||+||||||-+|.|+|..+|.++..++.+..+ . +.--+++.|+.+. .+|||+++|||+.+-
T Consensus 171 l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigG 239 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGG 239 (388)
T ss_pred EeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhcc
Confidence 799999999999999999999999999887732 1 2233577777775 389999999999984
No 27
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.18 E-value=2.8e-11 Score=123.37 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=53.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.||++|||||+++.++|+.++.+++.++.++. ..+...++.+|..+. .||||+|||||+.+.
T Consensus 190 l~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 190 MVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 68999999999999999999999999998752 245577888888764 589999999999975
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.15 E-value=9.5e-11 Score=111.20 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+.++++|..-+..++.... .|||||||||+|+.|+|+.++.+++.++.+... .+...++.+
T Consensus 128 ~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~ 207 (364)
T TIGR01242 128 EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREI 207 (364)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHH
Confidence 4677777777766554422 589999999999999999999999988765421 122446777
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..+|||+|||||..+.
T Consensus 208 f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 208 FELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred HHHHHhcCCcEEEhhhhhhhcc
Confidence 7655 4689999999999864
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=7.7e-11 Score=108.63 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=65.1
Q ss_pred HHHHHHhhcCcc-----------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---cCh--HHHHHHHHhcC--CCe
Q 024362 12 MDDLEMFLKRKD-----------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---RGN--MELRNLLIATE--NKS 73 (268)
Q Consensus 12 ~~Di~~Fl~~~~-----------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~~d--~~L~~lf~~~p--~~~ 73 (268)
.+=|..||.+.+ ||||||||||.|++|+||+.+.+++.+..++.. ..| ..+++|+..+. .||
T Consensus 133 crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPc 212 (368)
T COG1223 133 CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPC 212 (368)
T ss_pred HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCe
Confidence 355677887642 699999999999999999999999999987731 222 56889998885 599
Q ss_pred eEEEeCCccchhhhhhhhhh
Q 024362 74 LLVVEDIDCSIELQNRHAQA 93 (268)
Q Consensus 74 IiliEDID~~~~~~~R~~~~ 93 (268)
||+|||+|+++. +|+.++
T Consensus 213 ivFiDE~DAiaL--dRryQe 230 (368)
T COG1223 213 IVFIDELDAIAL--DRRYQE 230 (368)
T ss_pred EEEehhhhhhhh--hhhHHH
Confidence 999999999998 776553
No 30
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.3e-11 Score=111.25 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=48.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---c-ChHHH-HHHHHhcC--CCeeEEEeCCccchhh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---R-GNMEL-RNLLIATE--NKSLLVVEDIDCSIEL 86 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~-~d~~L-~~lf~~~p--~~~IiliEDID~~~~~ 86 (268)
.|||||||||-|+.|.|...+..+.-+-....+ . +...| ++.|.-+. .||||+|||||++|..
T Consensus 210 mYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtK 279 (424)
T KOG0652|consen 210 MYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 279 (424)
T ss_pred eeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccc
Confidence 699999999999999999998877666554422 2 33444 77777654 5999999999999973
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.05 E-value=2.5e-10 Score=90.58 Aligned_cols=63 Identities=22% Similarity=0.474 Sum_probs=53.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhc--CC-CeeEEEeCCccchhh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIAT--EN-KSLLVVEDIDCSIEL 86 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~--p~-~~IiliEDID~~~~~ 86 (268)
.||+||||||+++.++|..++.+++.++.+... .+...+..+|..+ .. +|||+|||+|..+..
T Consensus 3 l~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred EECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 489999999999999999999999999988743 1336678888875 33 799999999999873
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.97 E-value=1.2e-09 Score=98.67 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcC----c------cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEe
Q 024362 9 KMIMDDLEMFLKR----K------DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVE 78 (268)
Q Consensus 9 ~~i~~Di~~Fl~~----~------~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliE 78 (268)
+.|+.-+.-|+.. . =||||||||||||+..||++++.+++.++.+. .....+|..++..+..+.|++||
T Consensus 30 ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~-i~k~~dl~~il~~l~~~~ILFID 108 (233)
T PF05496_consen 30 EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA-IEKAGDLAAILTNLKEGDILFID 108 (233)
T ss_dssp HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC---SCHHHHHHHHT--TT-EEEEC
T ss_pred HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchh-hhhHHHHHHHHHhcCCCcEEEEe
Confidence 3455556666542 1 28999999999999999999999999988765 33458899999999999999999
Q ss_pred CCccchh
Q 024362 79 DIDCSIE 85 (268)
Q Consensus 79 DID~~~~ 85 (268)
||...-.
T Consensus 109 EIHRlnk 115 (233)
T PF05496_consen 109 EIHRLNK 115 (233)
T ss_dssp TCCC--H
T ss_pred chhhccH
Confidence 9998754
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.96 E-value=2.5e-09 Score=110.39 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.+||+.++.+++.++.+.. +.+...++.+|..+ ..+|||+|||||+...
T Consensus 217 L~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 217 LYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAP 285 (733)
T ss_pred EECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc
Confidence 68999999999999999999999999987652 12346788899875 3579999999999875
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=98.95 E-value=6.7e-08 Score=95.32 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcCc---c--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc------
Q 024362 1 MAVDFDVKKMIMDDLEMFLKRK---D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT------ 69 (268)
Q Consensus 1 viLd~~~K~~i~~Di~~Fl~~~---~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~------ 69 (268)
|+..+..++.|...+..|.++. . +|||||||||+++.|+|+.++++++.++.++ ..+.+.+..++...
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd-~r~~~~i~~~i~~~~~~~sl 94 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD-QRTADVIERVAGEAATSGSL 94 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc-cccHHHHHHHHHHhhccCcc
Confidence 4567888899999999998643 2 7999999999999999999999999999887 44445555554432
Q ss_pred --CCCeeEEEeCCccchh
Q 024362 70 --ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 --p~~~IiliEDID~~~~ 85 (268)
..+.||+|||+|....
T Consensus 95 ~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 95 FGARRKLILLDEVDGIHG 112 (482)
T ss_pred cCCCCeEEEEecCccccc
Confidence 2578999999998753
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.9e-10 Score=109.27 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=83.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCC-cEEEEecccc-----ccChHHHHHHHHhcCC----------CeeEEEeCCccchhhh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF-DVYDLELSAL-----LRGNMELRNLLIATEN----------KSLLVVEDIDCSIELQ 87 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~-~iy~l~ls~~-----~~~d~~L~~lf~~~p~----------~~IiliEDID~~~~~~ 87 (268)
.|||||||||-+++-|...|+. +=-++|..+- +.+++.+|+||..+.. =-||++||||++..
T Consensus 261 LyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK-- 338 (744)
T KOG0741|consen 261 LYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK-- 338 (744)
T ss_pred EECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH--
Confidence 6999999999999999999865 4455555541 4688999999998731 23999999999986
Q ss_pred hhhhhhc--CCCCc----------eee-e---------ee-------cccCCCCcccc-----------ccccc-----c
Q 024362 88 NRHAQAL--AVNPM----------VSN-M---------NY-------TARPGINQGPQ-----------VGSKC-----W 122 (268)
Q Consensus 88 ~R~~~~~--~~~~~----------~vT-L---------N~-------kiRPGRvD~~I-----------~~f~~-----~ 122 (268)
.|....+ +.+++ +|- | |. ++||||..+|+ +.++. -
T Consensus 339 qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMr 418 (744)
T KOG0741|consen 339 QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMR 418 (744)
T ss_pred hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhh
Confidence 4443322 11111 111 3 33 39999998888 33331 1
Q ss_pred ccccCCCchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 123 APTTLESEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 123 a~~y~~~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
..+|++.+.+ ..+++++. ..+|.||+.++.-
T Consensus 419 e~~~l~~dVd-l~elA~lT--KNfSGAEleglVk 449 (744)
T KOG0741|consen 419 ENNKLSADVD-LKELAALT--KNFSGAELEGLVK 449 (744)
T ss_pred hcCCCCCCcC-HHHHHHHh--cCCchhHHHHHHH
Confidence 2234443333 34455443 3689999988653
No 36
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.6e-09 Score=99.29 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=51.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---c--ChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---R--GNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~--~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.|||||||||.|++|+|-+.+-.++.+|-|+.+ | ++.-++.||.-+. .|+||+|||||+..-
T Consensus 171 LyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 171 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCG 239 (439)
T ss_pred EeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhcc
Confidence 499999999999999999999999999987743 2 3344578887664 599999999998765
No 37
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3e-08 Score=95.63 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=53.0
Q ss_pred HHhhcCc--cc-----cccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCc
Q 024362 16 EMFLKRK--DF-----HRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDID 81 (268)
Q Consensus 16 ~~Fl~~~--~~-----Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID 81 (268)
-+|+..- -| +||||||||-|++|+|.+.|--|+.|+-+.. +-++.-++-||.-+. .|++|+|||||
T Consensus 235 Pe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEID 314 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEID 314 (491)
T ss_pred HHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHH
Confidence 3566653 25 7999999999999999999999999986652 123333455554443 59999999999
Q ss_pred cchh
Q 024362 82 CSIE 85 (268)
Q Consensus 82 ~~~~ 85 (268)
+...
T Consensus 315 slcs 318 (491)
T KOG0738|consen 315 SLCS 318 (491)
T ss_pred HHHh
Confidence 9987
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.73 E-value=4.2e-08 Score=91.83 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=53.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.++|+.++.+++.++.+. ......+..++..+...+||+|||||....
T Consensus 56 l~GppG~GKT~la~~ia~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 56 LYGPPGLGKTTLANIIANEMGVNIRITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSP 116 (328)
T ss_pred EECCCCccHHHHHHHHHHHhCCCeEEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcch
Confidence 8999999999999999999999998887665 445577899999999999999999998753
No 39
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.68 E-value=6.1e-08 Score=89.01 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=52.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.++|..++.+++.++.+. ...-..+..++..+....|++|||||.+..
T Consensus 35 l~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEMGVNLKITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSP 95 (305)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEeccch-hcCchhHHHHHHhcccCCEEEEehHhhhCH
Confidence 7999999999999999999999988887654 344567888888888899999999998754
No 40
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.68 E-value=3.3e-08 Score=92.09 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhcCcc----------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEE
Q 024362 8 KKMIMDDLEMFLKRKD----------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~----------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~Iili 77 (268)
++.+.+-++-|+.... +|||||.|||||+..||+++|.++-..+.+. ..-..+|..++..+.+..|++|
T Consensus 31 Q~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~-leK~gDlaaiLt~Le~~DVLFI 109 (332)
T COG2255 31 QEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPA-LEKPGDLAAILTNLEEGDVLFI 109 (332)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccc-ccChhhHHHHHhcCCcCCeEEE
Confidence 3456677788887532 8999999999999999999999999988876 4566889999999999999999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
|||.....
T Consensus 110 DEIHrl~~ 117 (332)
T COG2255 110 DEIHRLSP 117 (332)
T ss_pred ehhhhcCh
Confidence 99998865
No 41
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.60 E-value=1.5e-07 Score=86.06 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEE
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLV 76 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~Iil 76 (268)
+.+|+.|++-...|+.... .||.+||||||+++|+.+.+ |+.++.+.-.. ..+=..|...+...|.+-||+
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~-L~~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED-LGDLPELLDLLRDRPYKFILF 111 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH-hccHHHHHHHHhcCCCCEEEE
Confidence 5789999999999999874 79999999999999999987 66666665444 344467778888889999999
Q ss_pred EeCCc
Q 024362 77 VEDID 81 (268)
Q Consensus 77 iEDID 81 (268)
+||+-
T Consensus 112 ~DDLs 116 (249)
T PF05673_consen 112 CDDLS 116 (249)
T ss_pred ecCCC
Confidence 99964
No 42
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.9e-07 Score=85.14 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=104.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc----ccChHHHHHHHHhcC---CCeeEEEeCCccchhhhhhhhhhc--
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL----LRGNMELRNLLIATE---NKSLLVVEDIDCSIELQNRHAQAL-- 94 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~----~~~d~~L~~lf~~~p---~~~IiliEDID~~~~~~~R~~~~~-- 94 (268)
.|||||||||-|++|+|.+.|.++..|+++.. .-....|-+....++ .||||+||+||+... .|.....
T Consensus 132 L~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~--~R~s~dHEa 209 (386)
T KOG0737|consen 132 LYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLG--QRRSTDHEA 209 (386)
T ss_pred ecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHh--hcccchHHH
Confidence 58999999999999999999999999999872 112244544455555 499999999999875 3422111
Q ss_pred ------------C---CC-Cceee----eee---------cccCCCCcccc---ccccccccccCC----CchhhHHHHH
Q 024362 95 ------------A---VN-PMVSN----MNY---------TARPGINQGPQ---VGSKCWAPTTLE----SEHPFSLEIE 138 (268)
Q Consensus 95 ------------~---~~-~~~vT----LN~---------kiRPGRvD~~I---~~f~~~a~~y~~----~~~~lf~~i~ 138 (268)
+ .+ +..|- +|. +==|-|+-+.+ .....+.+-++. ..+--+.++.
T Consensus 210 ~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA 289 (386)
T KOG0737|consen 210 TAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIA 289 (386)
T ss_pred HHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHH
Confidence 1 11 11232 454 12256666555 111112121221 1122234444
Q ss_pred HhhhcCCCChHHHHHHhhcCCCHHHHHhhhHHHhhhhhhHHHHHHhccccCCChHHHhhhhcCC---CCHHHHHHHHHHH
Q 024362 139 ELTEKVMVTPADVAERLMRSEVPEVALRDLIDFLKNKKREQEVEELTEKVMVTPADVAERLMRS---EVPEVALRDLIDF 215 (268)
Q Consensus 139 ~~~~~~~~tpAei~~~l~~~~d~~~al~~~~~~Lk~h~l~~eIe~li~e~~~SPAEVqg~Ll~k---~dp~~Al~~l~~w 215 (268)
.. ..++|..|+.+++. ..|+.++.+.+..+....+....+.+...+|+-=.+.+++. +|-..|...+-.-
T Consensus 290 ~~--t~GySGSDLkelC~-----~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 290 QM--TEGYSGSDLKELCR-----LAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred Hh--cCCCcHHHHHHHHH-----HHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 33 34789999988664 35666666666664112234455556677777644555542 3444555444333
No 43
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.51 E-value=2.1e-07 Score=84.85 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcC----c---cccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--------cChHHHHHHHHhc
Q 024362 8 KKMIMDDLEMFLKR----K---DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--------RGNMELRNLLIAT 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~----~---~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--------~~d~~L~~lf~~~ 69 (268)
.+.++..+..|... . =+||++|||||+|+.|||+++ |..++.+++++.. .++.....++..+
T Consensus 81 q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l 160 (244)
T PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL 160 (244)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh
Confidence 34467777777753 1 178999999999999999999 8889998887632 1223456778888
Q ss_pred CCCeeEEEeCCccch
Q 024362 70 ENKSLLVVEDIDCSI 84 (268)
Q Consensus 70 p~~~IiliEDID~~~ 84 (268)
....+|+||||++..
T Consensus 161 ~~~dlLvIDDig~~~ 175 (244)
T PRK07952 161 SNVDLLVIDEIGVQT 175 (244)
T ss_pred ccCCEEEEeCCCCCC
Confidence 888899999999865
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=9.9e-08 Score=101.02 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=65.3
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccc----c-ccChHHHHHHHHhcCC--CeeEEEeCCccchhhhhhhh
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSA----L-LRGNMELRNLLIATEN--KSLLVVEDIDCSIELQNRHA 91 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~----~-~~~d~~L~~lf~~~p~--~~IiliEDID~~~~~~~R~~ 91 (268)
|||+||||||+++.|+|+.. +..+|.-+..+ + +-.+.+|+.||..+.+ ++||+.|+||.....+.+..
T Consensus 304 ~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq 383 (1080)
T KOG0732|consen 304 FHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ 383 (1080)
T ss_pred ecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH
Confidence 89999999999999999988 33444444433 2 2355789999999864 99999999998877433221
Q ss_pred hhc---------------CCCCceee---eee-------cccCCCCcccc
Q 024362 92 QAL---------------AVNPMVSN---MNY-------TARPGINQGPQ 116 (268)
Q Consensus 92 ~~~---------------~~~~~~vT---LN~-------kiRPGRvD~~I 116 (268)
... +.++..|+ +|. ..||||+|+..
T Consensus 384 Eqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref 433 (1080)
T KOG0732|consen 384 EQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREF 433 (1080)
T ss_pred HHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeE
Confidence 110 11222233 665 39999999998
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.51 E-value=1.5e-07 Score=90.95 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=52.1
Q ss_pred cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 23 DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 23 ~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
-||||||||||||+.+||+.++++|+.+|... .+-.+++.+|... .++.|++||||..+-.
T Consensus 52 Il~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCceEEecccc--ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 38999999999999999999999999999765 5557788777765 3589999999998743
No 46
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.48 E-value=4.1e-07 Score=82.94 Aligned_cols=79 Identities=22% Similarity=0.177 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHH-------------------
Q 024362 6 DVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELR------------------- 63 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~------------------- 63 (268)
..-+.+++.+..|+.... .+|++|||||+++.+||..+|.+++.++.+. .++..+|-
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~-~~~~~dllg~~~~~~~~~~~~~~~~~~ 83 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA-ELTTSDLVGSYAGYTRKKVHDQFIHNV 83 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc-cCCHHHHhhhhcccchhhHHHHHHHHh
Confidence 345678899999998764 7899999999999999999999999998776 33322220
Q ss_pred --------------HHHHhcCCCeeEEEeCCccchh
Q 024362 64 --------------NLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 64 --------------~lf~~~p~~~IiliEDID~~~~ 85 (268)
-|+..+....+++|||||.+-.
T Consensus 84 ~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~ 119 (262)
T TIGR02640 84 VKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKP 119 (262)
T ss_pred hhhhcccceeecCchHHHHHHcCCEEEEcchhhCCH
Confidence 1233344567999999998643
No 47
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.46 E-value=3.2e-07 Score=88.85 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=54.4
Q ss_pred HHHhhcCcc-----ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC------CCeeEEEeCCccc
Q 024362 15 LEMFLKRKD-----FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE------NKSLLVVEDIDCS 83 (268)
Q Consensus 15 i~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p------~~~IiliEDID~~ 83 (268)
+..++.... +||++|||||+|+.+||..++.+++.++.+. .+...++.++..+. .+.||+|||||..
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~--~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l 104 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT--SGVKDLREVIEEARQRRSAGRRTILFIDEIHRF 104 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc--ccHHHHHHHHHHHHHhhhcCCceEEEEechhhh
Confidence 555555443 7999999999999999999999999998765 34456666666552 6789999999987
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
..
T Consensus 105 ~~ 106 (413)
T PRK13342 105 NK 106 (413)
T ss_pred CH
Confidence 53
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=9.1e-07 Score=69.42 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcC--cc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHH-----------HHHHhc
Q 024362 9 KMIMDDLEMFLKR--KD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELR-----------NLLIAT 69 (268)
Q Consensus 9 ~~i~~Di~~Fl~~--~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~-----------~lf~~~ 69 (268)
+.++..+..++.. .. .+|++|||||+|+.++++.+ +..++.++.+. ........ ......
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD-LLEGLVVAELFGHFLVRLLFELAEK 82 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh-hhhhhHHHHHhhhhhHhHHHHhhcc
Confidence 4567777777765 22 78999999999999999999 99999999876 32222222 122234
Q ss_pred CCCeeEEEeCCccc
Q 024362 70 ENKSLLVVEDIDCS 83 (268)
Q Consensus 70 p~~~IiliEDID~~ 83 (268)
..+++|+|||++..
T Consensus 83 ~~~~~lilDe~~~~ 96 (151)
T cd00009 83 AKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEEeChhhh
Confidence 56899999999976
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.43 E-value=5.6e-07 Score=93.74 Aligned_cols=80 Identities=24% Similarity=0.233 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhc-C--c----cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccC---------------hHHH
Q 024362 5 FDVKKMIMDDLEMFLK-R--K----DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRG---------------NMEL 62 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~-~--~----~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~---------------d~~L 62 (268)
+..|+.|..-+..... + + -+|||||||||+++.+||+.++.+++.++++. ..+ ...+
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~-~~~~~~i~g~~~~~~g~~~g~i 404 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGG-VRDEAEIRGHRRTYVGAMPGRI 404 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCC-cccHHHHcCCCCceeCCCCchH
Confidence 3456666655544322 1 1 18999999999999999999999999998765 211 2344
Q ss_pred HHHHHhcC-CCeeEEEeCCccchh
Q 024362 63 RNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 63 ~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
...|.... .+.||||||||.+..
T Consensus 405 ~~~l~~~~~~~~villDEidk~~~ 428 (775)
T TIGR00763 405 IQGLKKAKTKNPLFLLDEIDKIGS 428 (775)
T ss_pred HHHHHHhCcCCCEEEEechhhcCC
Confidence 55565543 456999999999974
No 50
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.8e-07 Score=92.47 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=55.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--C-CeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--N-KSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~-~~IiliEDID~~~~ 85 (268)
.|+|||||||.++.|+|++.+..++.++.++- +-+++.|+..|..+. . |+||+|||||+...
T Consensus 223 l~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p 292 (693)
T KOG0730|consen 223 LYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCP 292 (693)
T ss_pred ccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC
Confidence 69999999999999999999999999988752 457899999999874 3 89999999999875
No 51
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.36 E-value=1.9e-07 Score=76.01 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=45.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHh---------------cCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIA---------------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~---------------~p~~~IiliEDID~~~~ 85 (268)
.+|++|||||+|+..+|..++.+++.++++. ..+..+|.....- +..++|++||||+.+-.
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~-~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSS-DTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP 79 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TT-TSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEecc-ccccccceeeeeecccccccccccccccccceeEEEECCcccCCH
Confidence 4799999999999999999999999999998 5555555422221 12588999999997653
No 52
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=1.1e-06 Score=82.08 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHHHHHHHHh---c------CC
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNMELRNLLIA---T------EN 71 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~L~~lf~~---~------p~ 71 (268)
++.-|..++.... +||||||||||++.|+|..+. ..+..++.++ ..+-+.++.++.. . ..
T Consensus 21 ~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd-~~~~~~vr~~i~~~~~~~~~~~~~~ 99 (319)
T PLN03025 21 AVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD-DRGIDVVRNKIKMFAQKKVTLPPGR 99 (319)
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc-cccHHHHHHHHHHHHhccccCCCCC
Confidence 4455666666543 799999999999999999972 2344455444 2233445544332 1 23
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
..||+|||+|....
T Consensus 100 ~kviiiDE~d~lt~ 113 (319)
T PLN03025 100 HKIVILDEADSMTS 113 (319)
T ss_pred eEEEEEechhhcCH
Confidence 67999999999764
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.33 E-value=1.5e-06 Score=80.15 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHH----HHHHHHhc--
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNME----LRNLLIAT-- 69 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~----L~~lf~~~-- 69 (268)
+..+..++. +..|+.... +||++|||||+++.++|..++.+++.++.+. .. -+. +.......
T Consensus 24 ~~~~~~~~~----l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~-~~~i~~~l~~~~~~~~~ 97 (316)
T PHA02544 24 ILPAADKET----FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR-IDFVRNRLTRFASTVSL 97 (316)
T ss_pred cCcHHHHHH----HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc-HHHHHHHHHHHHHhhcc
Confidence 344444444 445554443 3899999999999999999999999999876 22 222 33333333
Q ss_pred -CCCeeEEEeCCccch
Q 024362 70 -ENKSLLVVEDIDCSI 84 (268)
Q Consensus 70 -p~~~IiliEDID~~~ 84 (268)
..+.||+|||+|...
T Consensus 98 ~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 98 TGGGKVIIIDEFDRLG 113 (316)
T ss_pred cCCCeEEEEECccccc
Confidence 368899999999873
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.8e-05 Score=79.96 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccC
Q 024362 9 KMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRG 58 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~ 58 (268)
+.+++-|..++.... |||++||||||++.++|..|++ +++.++-++ ...
T Consensus 22 e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-~rg 100 (830)
T PRK07003 22 EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-NRG 100 (830)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc-ccc
Confidence 345556667776643 8999999999999999999975 566666554 334
Q ss_pred hHHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 59 NMELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 59 d~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
-++++.++..+ | +..|+||||+|....
T Consensus 101 VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 101 VDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133 (830)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEeChhhCCH
Confidence 45677777653 2 467999999998754
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.29 E-value=9.8e-07 Score=91.38 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccccc-------ChHHHHHHHHh
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALLR-------GNMELRNLLIA 68 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~~-------~d~~L~~lf~~ 68 (268)
.+..+-..|.++. +||+||||||+++.+||..+ ++.+|.++++.... ....|+.+|..
T Consensus 190 ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~ 269 (731)
T TIGR02639 190 ELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSE 269 (731)
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHH
Confidence 3444555555542 89999999999999999988 88999999776321 23688999987
Q ss_pred cC--CCeeEEEeCCccchh
Q 024362 69 TE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ~p--~~~IiliEDID~~~~ 85 (268)
+. .++|++|||||....
T Consensus 270 ~~~~~~~ILfiDEih~l~~ 288 (731)
T TIGR02639 270 IEKEPNAILFIDEIHTIVG 288 (731)
T ss_pred HhccCCeEEEEecHHHHhc
Confidence 64 489999999998864
No 56
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-06 Score=89.97 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=51.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHH----HHHHhcC------------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELR----NLLIATE------------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~----~lf~~~p------------~~~IiliEDID~~~~ 85 (268)
++||||+|||||+.+||..+|..++.++|.. +.|++.++ ..+.++| ..-++||||||-.+.
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGG-vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGG-VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS 431 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCc-cccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccC
Confidence 8999999999999999999999999999998 77777774 3333333 345899999999986
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.25 E-value=1.8e-06 Score=81.08 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcC-------cc--ccccCCCCHHHHHHHHHhhc---CCcEEEEecccc------ccChHHHHHHHHhc
Q 024362 8 KKMIMDDLEMFLKR-------KD--FHRRVGRGKSSLIAGMANFL---NFDVYDLELSAL------LRGNMELRNLLIAT 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~-------~~--~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~------~~~d~~L~~lf~~~ 69 (268)
+..++.-+..|+.. +. +||++|||||.|+.|||+.+ |+.++.+..+.. ..++..+...+..+
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l 215 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV 215 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 44445555666652 12 78999999999999999998 888988887652 12344567788888
Q ss_pred CCCeeEEEeCCccch
Q 024362 70 ENKSLLVVEDIDCSI 84 (268)
Q Consensus 70 p~~~IiliEDID~~~ 84 (268)
..-.+++||||.+-.
T Consensus 216 ~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 216 KEAPVLMLDDIGAEQ 230 (306)
T ss_pred cCCCEEEEecCCCcc
Confidence 888999999998753
No 58
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.25 E-value=1.3e-06 Score=79.34 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=43.6
Q ss_pred ccccCCCCHHHHHHHHHhhc---C----CcEEEEecccc-----ccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---N----FDVYDLELSAL-----LRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~----~~iy~l~ls~~-----~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+|||||||||+++.++|..+ + .+++.++-++. +.+...++.+|.... .+||+|||||...
T Consensus 47 l~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-~~VL~IDE~~~L~ 118 (261)
T TIGR02881 47 FKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-GGVLFIDEAYSLA 118 (261)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-CCEEEEechhhhc
Confidence 79999999999999999875 2 24555444331 123456678887765 5899999999864
No 59
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.24 E-value=1.8e-06 Score=66.69 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=47.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc---EEEEecccccc-------------------ChHHHHHHHHhcCC--CeeEEEeC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD---VYDLELSALLR-------------------GNMELRNLLIATEN--KSLLVVED 79 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~---iy~l~ls~~~~-------------------~d~~L~~lf~~~p~--~~IiliED 79 (268)
.+|++|||||+++.++|..++.. ++.++.+.... ....+..++..+.. ++||+|||
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe 86 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 68999999999999999999886 88888775211 12344555555543 49999999
Q ss_pred Cccchh
Q 024362 80 IDCSIE 85 (268)
Q Consensus 80 ID~~~~ 85 (268)
|+....
T Consensus 87 i~~~~~ 92 (148)
T smart00382 87 ITSLLD 92 (148)
T ss_pred CcccCC
Confidence 999876
No 60
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.23 E-value=3.4e-06 Score=88.25 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhcCc-------cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHH---------------
Q 024362 5 FDVKKMIMDDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMEL--------------- 62 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L--------------- 62 (268)
+.+|+.|+.-+....... -+||||||||||++.+||+.++.+++.++++. ..+...+
T Consensus 328 ~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~-~~d~~~i~g~~~~~~g~~~G~~ 406 (784)
T PRK10787 328 ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG-VRDEAEIRGHRRTYIGSMPGKL 406 (784)
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC-CCCHHHhccchhccCCCCCcHH
Confidence 467788877666544321 17999999999999999999999999999876 3333333
Q ss_pred HHHHHhcC-CCeeEEEeCCccchh
Q 024362 63 RNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 63 ~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
...|.... ...||||||||.+..
T Consensus 407 ~~~l~~~~~~~~villDEidk~~~ 430 (784)
T PRK10787 407 IQKMAKVGVKNPLFLLDEIDKMSS 430 (784)
T ss_pred HHHHHhcCCCCCEEEEEChhhccc
Confidence 23344433 456899999999875
No 61
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=6.1e-05 Score=75.62 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=46.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHHHHHHHHhc---C---CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNMELRNLLIAT---E---NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~L~~lf~~~---p---~~~ 73 (268)
|||++||||||++.++|..++. |++.++.++ ...-+.++.++..+ | ++.
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-~~~vd~ir~l~~~~~~~p~~~~~k 121 (527)
T PRK14969 43 FTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-NTQVDAMRELLDNAQYAPTRGRFK 121 (527)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc-cCCHHHHHHHHHHHhhCcccCCce
Confidence 8999999999999999999976 466666554 33445677776654 3 367
Q ss_pred eEEEeCCccchh
Q 024362 74 LLVVEDIDCSIE 85 (268)
Q Consensus 74 IiliEDID~~~~ 85 (268)
|++|||+|....
T Consensus 122 VvIIDEad~ls~ 133 (527)
T PRK14969 122 VYIIDEVHMLSK 133 (527)
T ss_pred EEEEcCcccCCH
Confidence 999999998753
No 62
>PRK12377 putative replication protein; Provisional
Probab=98.20 E-value=4e-06 Score=76.63 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=48.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecccccc-------ChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLR-------GNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~-------~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|||+.+ |+.+..+++++... +......++..+....+|+||||+...
T Consensus 106 l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 106 FSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 78999999999999999998 67888887766211 122355778888899999999998754
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=98.20 E-value=1.6e-06 Score=77.44 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
.||++|||||+|+.|+|+++ +..+..++++.. +.....++..+.+..+++||||+...
T Consensus 44 l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 44 IWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS---QYFSPAVLENLEQQDLVCLDDLQAVI 104 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh---hhhhHHHHhhcccCCEEEEeChhhhc
Confidence 57999999999999999986 567777777541 12234556667777899999999864
No 64
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.20 E-value=3.3e-06 Score=73.81 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeC
Q 024362 8 KKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVED 79 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliED 79 (268)
.+.++.-++.++.... .||++|||||+|+.+++..+ +.+++.++.+. +++ ....++..+....+|+|||
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~--~~~-~~~~~~~~~~~~~lLvIDd 98 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE--LAQ-ADPEVLEGLEQADLVCLDD 98 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH--HHH-hHHHHHhhcccCCEEEEeC
Confidence 4556777777764321 78999999999999999887 46788888766 322 2345566666677999999
Q ss_pred Cccchh
Q 024362 80 IDCSIE 85 (268)
Q Consensus 80 ID~~~~ 85 (268)
||....
T Consensus 99 i~~l~~ 104 (226)
T TIGR03420 99 VEAIAG 104 (226)
T ss_pred hhhhcC
Confidence 998653
No 65
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.19 E-value=1.9e-06 Score=84.08 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=47.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc------C-hHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR------G-NMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~------~-d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
++||+|||||+|+.+||..++.+++.++.+.... + +..+..++... ..++||+|||||.+..
T Consensus 113 l~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 113 LIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 6899999999999999999999999999876211 1 12344554432 2589999999999864
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4e-06 Score=83.06 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=51.5
Q ss_pred HHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHH
Q 024362 12 MDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNME 61 (268)
Q Consensus 12 ~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~ 61 (268)
+.-+..++.... +||||||||||+|.++|..++. +++.++.++ ..+-+.
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-~~gid~ 101 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-NRGIDE 101 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-cCCHHH
Confidence 444555555432 7999999999999999999875 677777653 233455
Q ss_pred HHHHHHhc---C---CCeeEEEeCCccch
Q 024362 62 LRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 62 L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
++.+...+ | .+.||+|||+|...
T Consensus 102 iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 102 IRKIRDAVGYRPMEGKYKVYIIDEVHMLT 130 (472)
T ss_pred HHHHHHHHhhChhcCCeEEEEEEChHHhH
Confidence 66655443 2 46799999999874
No 67
>PRK08181 transposase; Validated
Probab=98.18 E-value=1.9e-06 Score=79.57 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=55.2
Q ss_pred HHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCC
Q 024362 13 DDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDI 80 (268)
Q Consensus 13 ~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDI 80 (268)
..+..|+.... +||++|||||+|+.|||..+ |+.++.++.+... ..+..+..++..+....+++|||+
T Consensus 97 ~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDl 176 (269)
T PRK08181 97 AAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDL 176 (269)
T ss_pred HHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecc
Confidence 44557887654 89999999999999999754 8888888876521 123456677888888889999999
Q ss_pred ccch
Q 024362 81 DCSI 84 (268)
Q Consensus 81 D~~~ 84 (268)
+...
T Consensus 177 g~~~ 180 (269)
T PRK08181 177 AYVT 180 (269)
T ss_pred cccc
Confidence 8764
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=5.7e-05 Score=79.87 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCc------------------------EEEEeccccccCh
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFD------------------------VYDLELSALLRGN 59 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~------------------------iy~l~ls~~~~~d 59 (268)
.|+.-|..++.... |||++||||||+++++|..++.. ++.++.++ ...-
T Consensus 23 ~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-~~kV 101 (944)
T PRK14949 23 HVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-RTKV 101 (944)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc-ccCH
Confidence 34555666666542 79999999999999999999763 23333332 1223
Q ss_pred HHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 60 MELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 60 ~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
+.++.+...+ | ++-|++|||+|.+..
T Consensus 102 DdIReLie~v~~~P~~gk~KViIIDEAh~LT~ 133 (944)
T PRK14949 102 DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR 133 (944)
T ss_pred HHHHHHHHHHHhhhhcCCcEEEEEechHhcCH
Confidence 4566666544 2 356999999999853
No 69
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.16 E-value=5.3e-06 Score=77.83 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC---------CcEEEEeccccccC------------
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN---------FDVYDLELSALLRG------------ 58 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~---------~~iy~l~ls~~~~~------------ 58 (268)
+++.+.|..-+..++.+.. .||+||||||+++.+++..+. +.++.++... ..+
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQL 99 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHH
Confidence 3456667777776665432 699999999999999998763 4566666433 111
Q ss_pred --------------hHHHHHHHHhc---CCCeeEEEeCCccch
Q 024362 59 --------------NMELRNLLIAT---ENKSLLVVEDIDCSI 84 (268)
Q Consensus 59 --------------d~~L~~lf~~~---p~~~IiliEDID~~~ 84 (268)
.+.+..++..+ .++.||+|||+|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 100 RGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred hhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 11123333333 457899999999985
No 70
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=0.00015 Score=73.41 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC------------------------CcEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN------------------------FDVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~------------------------~~iy~l~ls~~~~~d~ 60 (268)
+++-+...+.... |||++||||||++.++|..++ .|++.++.++ ...-+
T Consensus 24 v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-~~~vd 102 (559)
T PRK05563 24 ITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS-NNGVD 102 (559)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-cCCHH
Confidence 4444555554432 799999999999999999985 5777887755 33445
Q ss_pred HHHHHHHhc---C---CCeeEEEeCCccch
Q 024362 61 ELRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
.++.+...+ | .+-|++|||+|...
T Consensus 103 ~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt 132 (559)
T PRK05563 103 EIRDIRDKVKYAPSEAKYKVYIIDEVHMLS 132 (559)
T ss_pred HHHHHHHHHhhCcccCCeEEEEEECcccCC
Confidence 677666653 3 36699999999874
No 71
>PHA02244 ATPase-like protein
Probab=98.15 E-value=6.2e-06 Score=79.62 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEecccc--c-----cChHHHH--HHHHhcCCCeeE
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL--L-----RGNMELR--NLLIATENKSLL 75 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~--~-----~~d~~L~--~lf~~~p~~~Ii 75 (268)
-..+..++..|+.... .+|++|||||+|+.+||..++++++.++.... . ..+..+. .++..+....++
T Consensus 105 ~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvL 184 (383)
T PHA02244 105 FHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLF 184 (383)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEE
Confidence 4456678888888764 78999999999999999999999999873210 0 0111111 445556778999
Q ss_pred EEeCCccchh
Q 024362 76 VVEDIDCSIE 85 (268)
Q Consensus 76 liEDID~~~~ 85 (268)
+|||||.+..
T Consensus 185 iLDEId~a~p 194 (383)
T PHA02244 185 FIDEIDASIP 194 (383)
T ss_pred EEeCcCcCCH
Confidence 9999998754
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.9e-06 Score=84.82 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=49.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHHHHHHHHhcC------CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNMELRNLLIATE------NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~L~~lf~~~p------~~~ 73 (268)
|||++||||||+++++|..+++ |++.++.++ ...-+.++.++..++ ++.
T Consensus 42 F~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-~~~VddIReli~~~~y~P~~gk~K 120 (702)
T PRK14960 42 FTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-RTKVEDTRELLDNVPYAPTQGRFK 120 (702)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-cCCHHHHHHHHHHHhhhhhcCCcE
Confidence 8999999999999999999976 778888765 345567888877652 467
Q ss_pred eEEEeCCccch
Q 024362 74 LLVVEDIDCSI 84 (268)
Q Consensus 74 IiliEDID~~~ 84 (268)
|++|||+|...
T Consensus 121 V~IIDEVh~LS 131 (702)
T PRK14960 121 VYLIDEVHMLS 131 (702)
T ss_pred EEEEechHhcC
Confidence 99999999874
No 73
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.14 E-value=6.5e-06 Score=75.46 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEE
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLV 76 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~Iil 76 (268)
+.+|+.|++--..|+.... .||-||||||||++|+=+.+ |+.++.|+=.+ ..+=..|..++...|.+-||+
T Consensus 66 d~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d-l~~Lp~l~~~Lr~~~~kFIlF 144 (287)
T COG2607 66 DRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED-LATLPDLVELLRARPEKFILF 144 (287)
T ss_pred hHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH-HhhHHHHHHHHhcCCceEEEE
Confidence 4689999999999999863 89999999999999999888 67777776555 445577788888899999999
Q ss_pred EeCC
Q 024362 77 VEDI 80 (268)
Q Consensus 77 iEDI 80 (268)
.||.
T Consensus 145 cDDL 148 (287)
T COG2607 145 CDDL 148 (287)
T ss_pred ecCC
Confidence 9995
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=6.8e-06 Score=72.56 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcC---cc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeC
Q 024362 9 KMIMDDLEMFLKR---KD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVED 79 (268)
Q Consensus 9 ~~i~~Di~~Fl~~---~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliED 79 (268)
+.++.-+..+... .. +||++|||||+|+.|+|+.+ +..++.++... . ...+.......+|+|||
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~--~-----~~~~~~~~~~~~liiDd 98 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS--P-----LLAFDFDPEAELYAVDD 98 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH--h-----HHHHhhcccCCEEEEeC
Confidence 3455556666542 12 79999999999999999975 67888887765 1 12234455667899999
Q ss_pred Cccch
Q 024362 80 IDCSI 84 (268)
Q Consensus 80 ID~~~ 84 (268)
||...
T Consensus 99 i~~l~ 103 (227)
T PRK08903 99 VERLD 103 (227)
T ss_pred hhhcC
Confidence 99864
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.8e-06 Score=81.65 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
++.-|..++.... |||++||||||+|.++|..++. +++.++..+ ..+-+
T Consensus 26 iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-~~gVd 104 (484)
T PRK14956 26 AIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS-NRGIE 104 (484)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh-cccHH
Confidence 4444555555532 8999999999999999999986 466666533 23345
Q ss_pred HHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 61 ELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 61 ~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
.++.+...+ | ...|++|||+|....
T Consensus 105 ~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 105 NIRELRDNVKFAPMGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEechhhcCH
Confidence 566665543 2 356999999998753
No 76
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.10 E-value=4.5e-06 Score=79.25 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=45.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHH-------------------HHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRN-------------------LLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~-------------------lf~~~p~~~IiliEDID~~~ 84 (268)
..|++|||||+++.+||..+|++++.++++.. ++..+|.- |-..+..++++|+||||.+-
T Consensus 69 L~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~-l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~ 147 (327)
T TIGR01650 69 VQGYHGTGKSTHIEQIAARLNWPCVRVNLDSH-VSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGR 147 (327)
T ss_pred EEeCCCChHHHHHHHHHHHHCCCeEEEEecCC-CChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccC
Confidence 78999999999999999999999999998873 32222210 11112467899999999875
Q ss_pred h
Q 024362 85 E 85 (268)
Q Consensus 85 ~ 85 (268)
.
T Consensus 148 p 148 (327)
T TIGR01650 148 P 148 (327)
T ss_pred H
Confidence 4
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00015 Score=73.95 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCc----c--ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRK----D--FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~----~--~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
+++-+..++... . ||||+||||||++.++|..+.. |++.++.++ ...-+
T Consensus 24 iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-~igVd 102 (605)
T PRK05896 24 IKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS-NNGVD 102 (605)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc-ccCHH
Confidence 444555555332 2 7999999999999999999852 666676544 23334
Q ss_pred HHHHHHHh---cC---CCeeEEEeCCccch
Q 024362 61 ELRNLLIA---TE---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~lf~~---~p---~~~IiliEDID~~~ 84 (268)
.++.+... .| .+-|++|||+|...
T Consensus 103 ~IReIi~~~~~~P~~~~~KVIIIDEad~Lt 132 (605)
T PRK05896 103 EIRNIIDNINYLPTTFKYKVYIIDEAHMLS 132 (605)
T ss_pred HHHHHHHHHHhchhhCCcEEEEEechHhCC
Confidence 56665543 33 36699999999864
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.5e-06 Score=81.46 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
+++-|..++.... |||++||||||++.++|..++. |++.++.++ ...-+
T Consensus 24 v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-~~~v~ 102 (509)
T PRK14958 24 VVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-RTKVE 102 (509)
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-cCCHH
Confidence 4444555554432 8999999999999999999975 377787655 34445
Q ss_pred HHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 61 ELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 61 ~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
+++.++..+ | +..|++|||+|....
T Consensus 103 ~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 103 DTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred HHHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 677777654 2 356999999998753
No 79
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.09 E-value=3.9e-06 Score=72.37 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=50.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC----cEEEEeccccccC----hHHHHHHHHhcCC------CeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF----DVYDLELSALLRG----NMELRNLLIATEN------KSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~----~iy~l~ls~~~~~----d~~L~~lf~~~p~------~~IiliEDID~~~~ 85 (268)
++||+|||||.|+.+||..+.. ++..++++. ... +..+..++...|. ..||||||||-+..
T Consensus 8 l~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~-~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE-YSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG-HCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc-ccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 6899999999999999999997 999999998 444 4556677776652 45999999999875
No 80
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=1.2e-05 Score=76.62 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
+++-+...+.... +|||+||||||++.++|..++. +++.++.++ ...-+
T Consensus 24 ~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-~~~v~ 102 (363)
T PRK14961 24 IVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-RTKVE 102 (363)
T ss_pred HHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc-cCCHH
Confidence 3344555554432 8999999999999999999863 556665443 23335
Q ss_pred HHHHHHHhc---C---CCeeEEEeCCccch
Q 024362 61 ELRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
.++.++..+ | .+.|++|||+|...
T Consensus 103 ~ir~i~~~~~~~p~~~~~kviIIDEa~~l~ 132 (363)
T PRK14961 103 EMREILDNIYYSPSKSRFKVYLIDEVHMLS 132 (363)
T ss_pred HHHHHHHHHhcCcccCCceEEEEEChhhcC
Confidence 566666653 3 35699999999875
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.3e-06 Score=83.30 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC-----------------------------cEEEEeccc
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF-----------------------------DVYDLELSA 54 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~-----------------------------~iy~l~ls~ 54 (268)
.+++-|.+++.... |||++||||||++.+||..+++ |++.++.++
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas 102 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS 102 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc
Confidence 44555666666543 7999999999999999999986 667777654
Q ss_pred cccChHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 55 LLRGNMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 55 ~~~~d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
..+=+++++++..+ .+..|+||||+|....
T Consensus 103 -~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 103 -NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred -cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH
Confidence 34446677777654 2467999999998753
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=8.6e-06 Score=79.57 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcC----------ccccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-cC---hHHHHHHH
Q 024362 1 MAVDFDVKKMIMDDLEMFLKR----------KDFHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-RG---NMELRNLL 66 (268)
Q Consensus 1 viLd~~~K~~i~~Di~~Fl~~----------~~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-~~---d~~L~~lf 66 (268)
|||.+.++..| .||-.=-.+ -=||||||||||-++.-||.+-|+|+..+-..+-. +. =..++.||
T Consensus 357 ViL~psLe~Ri-e~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lF 435 (630)
T KOG0742|consen 357 VILHPSLEKRI-EDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLF 435 (630)
T ss_pred eecCHHHHHHH-HHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHH
Confidence 68888888877 555543332 22899999999999999999999999888766510 22 25577888
Q ss_pred Hhc---CCCeeEEEeCCccchh
Q 024362 67 IAT---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 67 ~~~---p~~~IiliEDID~~~~ 85 (268)
.=. .+.-+++|||-|++.-
T Consensus 436 DWakkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 436 DWAKKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred HHHhhcccceEEEehhhHHHHH
Confidence 744 3466899999999875
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=9.8e-06 Score=72.81 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCc-----cccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCc
Q 024362 10 MIMDDLEMFLKRK-----DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDID 81 (268)
Q Consensus 10 ~i~~Di~~Fl~~~-----~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID 81 (268)
..+..+..+.... -+|||+|||||+|+.|+|+.+ |..+..+++..... ....++..+....+|+||||+
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~---~~~~~~~~~~~~dlliiDdi~ 107 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW---FVPEVLEGMEQLSLVCIDNIE 107 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---hhHHHHHHhhhCCEEEEeChh
Confidence 3556666665332 279999999999999999876 45677777765211 223444444445689999999
Q ss_pred cch
Q 024362 82 CSI 84 (268)
Q Consensus 82 ~~~ 84 (268)
...
T Consensus 108 ~~~ 110 (235)
T PRK08084 108 CIA 110 (235)
T ss_pred hhc
Confidence 864
No 84
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.04 E-value=5.9e-06 Score=77.80 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=39.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------cEEEEecccc-c--------cChHHHHHHHH-hc----CCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------DVYDLELSAL-L--------RGNMELRNLLI-AT----ENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------~iy~l~ls~~-~--------~~d~~L~~lf~-~~----p~~~IiliEDID~~ 83 (268)
|||||||||||.|.|+|..++- .++.++.|.. + .+-+.+..+.. .. |+.-||+|||.|+.
T Consensus 62 FyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm 141 (346)
T KOG0989|consen 62 FYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM 141 (346)
T ss_pred eeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh
Confidence 9999999999999999999865 2333333331 0 11233333331 22 23359999999997
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
..
T Consensus 142 ts 143 (346)
T KOG0989|consen 142 TS 143 (346)
T ss_pred hH
Confidence 64
No 85
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00024 Score=74.97 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC--------------------------CcEEEEeccccccC
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN--------------------------FDVYDLELSALLRG 58 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~--------------------------~~iy~l~ls~~~~~ 58 (268)
+++-|..++.... |||++||||||++.+||..|+ +||+.++..+ ...
T Consensus 23 v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-~~~ 101 (824)
T PRK07764 23 VTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-HGG 101 (824)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-cCC
Confidence 3444555555532 899999999999999999996 3456665533 223
Q ss_pred hHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 59 NMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 59 d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
=++++.|...+ ....|+||||+|.+..
T Consensus 102 Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 102 VDDARELRERAFFAPAESRYKIFIIDEAHMVTP 134 (824)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEechhhcCH
Confidence 34555554322 3567999999999854
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.01 E-value=7.6e-06 Score=84.97 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=44.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHh-------cCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIA-------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~-------~p~~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.++|+.++.+++.++-+.... ..++..+.. ...+.|++|||||....
T Consensus 57 L~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i--~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 57 LYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV--KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred EECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh--HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 8999999999999999999999888877654222 233333322 24577999999998754
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.01 E-value=7e-06 Score=86.18 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=57.3
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-----c--ChHHHHHHHH
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-----R--GNMELRNLLI 67 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-----~--~d~~L~~lf~ 67 (268)
+.++-+...|..+. .||+||||||+++.++|..+ ++.||.+++++.. . -+..|+.+|.
T Consensus 186 ~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~ 265 (821)
T CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFD 265 (821)
T ss_pred HHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHH
Confidence 33444555555443 89999999999999999987 5899999987522 1 2357888888
Q ss_pred hcC--CCeeEEEeCCccchh
Q 024362 68 ATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 ~~p--~~~IiliEDID~~~~ 85 (268)
.+. .++|++||||+....
T Consensus 266 ~~~~~~~~ILfiDEih~l~~ 285 (821)
T CHL00095 266 EIQENNNIILVIDEVHTLIG 285 (821)
T ss_pred HHHhcCCeEEEEecHHHHhc
Confidence 764 489999999998764
No 88
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.00 E-value=2.1e-05 Score=74.67 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-----CCcEEEEecc
Q 024362 6 DVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-----NFDVYDLELS 53 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls 53 (268)
+..++|..-+..++.... .||+||||||+++..++..+ ++.++.++..
T Consensus 37 ~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 37 EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 344556666666654322 69999999999999999987 5777777754
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.00 E-value=6.4e-06 Score=76.24 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=44.7
Q ss_pred ccccCCCCHHHHHHHHHhhcC---C----cEEEEecccc-----ccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---F----DVYDLELSAL-----LRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~----~iy~l~ls~~-----~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||+||||||+++.++|..+. + +++.++.++. +.+...++.+|..+. +++++|||||...
T Consensus 63 l~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-~gvL~iDEi~~L~ 134 (284)
T TIGR02880 63 FTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-GGVLFIDEAYYLY 134 (284)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-CcEEEEechhhhc
Confidence 789999999999999998873 2 5777765432 123455677787764 4899999999764
No 90
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.00 E-value=1e-05 Score=85.39 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=51.3
Q ss_pred ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccccc-------ChHHHHHHHHhc---CCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALLR-------GNMELRNLLIAT---ENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~~-------~d~~L~~lf~~~---p~~~IiliEDID~~ 83 (268)
+||+||||||+++.+||..+ ++.+|.++++.... -...|+.+|..+ ..++|++||||+..
T Consensus 204 L~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 204 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence 79999999999999999998 89999999887321 224688888764 46899999999998
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
..
T Consensus 284 ~~ 285 (857)
T PRK10865 284 VG 285 (857)
T ss_pred cc
Confidence 64
No 91
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.99 E-value=9.6e-06 Score=74.18 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=46.7
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHH-HHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMEL-RNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L-~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||.|+.|||+.+ |..++.+..++.. .++..+ ..|...+.+--+++||||-..-
T Consensus 110 l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 110 LLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 89999999999999999988 7889999888742 122223 3444557777799999988753
No 92
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=3.8e-06 Score=72.81 Aligned_cols=68 Identities=25% Similarity=0.384 Sum_probs=47.9
Q ss_pred HhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 17 MFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 17 ~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
.|+.... +||++|||||.|+.|||..+ |+.++.++.++.. ..+.....++..+.+.-+++|||+....
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP 121 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS-
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceee
Confidence 4666544 78999999999999999876 8999999887631 2334556677777777899999987543
No 93
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.5e-06 Score=81.65 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=51.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
.|||||||||-|++|||.+.+..++.++.++. +.++-.++.||.-+ -.++||+|||||..+.
T Consensus 191 LfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls 259 (428)
T KOG0740|consen 191 LFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLS 259 (428)
T ss_pred eecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHh
Confidence 79999999999999999999999999987773 22334567777655 4699999999999997
No 94
>CHL00181 cbbX CbbX; Provisional
Probab=97.97 E-value=8.1e-06 Score=75.85 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=43.7
Q ss_pred ccccCCCCHHHHHHHHHhhcC---C----cEEEEecccc-----ccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---F----DVYDLELSAL-----LRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~----~iy~l~ls~~-----~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||+||||||+++.++|..+. + +++.++.+.. +.+......+|.... .+||+|||+|..+
T Consensus 64 l~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-ggVLfIDE~~~l~ 135 (287)
T CHL00181 64 FTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-GGVLFIDEAYYLY 135 (287)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-CCEEEEEccchhc
Confidence 699999999999999999762 2 4676664431 123344566777654 5799999999864
No 95
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.96 E-value=1.2e-05 Score=78.57 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=47.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc---cc---C-hHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL---LR---G-NMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~---~~---~-d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
++||+|||||+++.+||..++.+++.++.+.. +. + ...|..++...+ .++||+|||||.+..
T Consensus 121 L~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 121 LIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred EECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 68999999999999999999999998886542 11 1 234556655433 478999999998864
No 96
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=2.7e-05 Score=77.85 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC-----------------------cEEEEeccccccChHH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF-----------------------DVYDLELSALLRGNME 61 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~-----------------------~iy~l~ls~~~~~d~~ 61 (268)
++.-|..++.... ||||+||||||++.++|..+.. +++.++.++ ..+-+.
T Consensus 22 v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-~~~vd~ 100 (504)
T PRK14963 22 VKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-NNSVED 100 (504)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc-cCCHHH
Confidence 4555666666553 7999999999999999999853 466677653 333445
Q ss_pred HHHHHHh---c---CCCeeEEEeCCccch
Q 024362 62 LRNLLIA---T---ENKSLLVVEDIDCSI 84 (268)
Q Consensus 62 L~~lf~~---~---p~~~IiliEDID~~~ 84 (268)
++.+... . ..+.||||||+|...
T Consensus 101 iR~l~~~~~~~p~~~~~kVVIIDEad~ls 129 (504)
T PRK14963 101 VRDLREKVLLAPLRGGRKVYILDEAHMMS 129 (504)
T ss_pred HHHHHHHHhhccccCCCeEEEEECccccC
Confidence 5555332 2 257799999999764
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=2.9e-05 Score=77.71 Aligned_cols=74 Identities=11% Similarity=0.276 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC----------------------------cEEEEecccc
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF----------------------------DVYDLELSAL 55 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~----------------------------~iy~l~ls~~ 55 (268)
.+++-+...+.... +||+|||||||++.++|..++. |++.++..+
T Consensus 28 ~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas- 106 (507)
T PRK06645 28 VLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS- 106 (507)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC-
Confidence 34555565444432 7999999999999999999864 556666544
Q ss_pred ccChHHHHHHHHhc---C---CCeeEEEeCCccch
Q 024362 56 LRGNMELRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 56 ~~~d~~L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
...-++++.++..+ | ++.||+|||+|...
T Consensus 107 ~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls 141 (507)
T PRK06645 107 KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS 141 (507)
T ss_pred CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC
Confidence 33446777777664 2 46799999999864
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=3e-05 Score=78.78 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC--------------------------CcEEEEeccccc
Q 024362 9 KMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN--------------------------FDVYDLELSALL 56 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~--------------------------~~iy~l~ls~~~ 56 (268)
+.+++-|..++.... |||++||||||++.++|..++ .|++.++.++ .
T Consensus 19 ~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-~ 97 (584)
T PRK14952 19 EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-H 97 (584)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccc-c
Confidence 345566777777643 899999999999999999876 3566666544 2
Q ss_pred cChHHHHHHHHh---cC---CCeeEEEeCCccchh
Q 024362 57 RGNMELRNLLIA---TE---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 57 ~~d~~L~~lf~~---~p---~~~IiliEDID~~~~ 85 (268)
..=+.++.+... .| .+-|++|||+|....
T Consensus 98 ~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 98 GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH
Confidence 223444444332 33 467999999998753
No 99
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.3e-05 Score=76.25 Aligned_cols=89 Identities=16% Similarity=0.292 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHhh---cCc------c------ccccCCCCHHHHHHHHHhhcCCc-------EEEEecccc---
Q 024362 1 MAVDFDVKKMIMDDLEMFL---KRK------D------FHRRVGRGKSSLIAGMANFLNFD-------VYDLELSAL--- 55 (268)
Q Consensus 1 viLd~~~K~~i~~Di~~Fl---~~~------~------~Y~~~GTGKTSl~~AlA~~l~~~-------iy~l~ls~~--- 55 (268)
++.|.++|+++++=.-.-+ .-+ . .+|||||||||||+|||..|... -..+.+++.
T Consensus 144 Liyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF 223 (423)
T KOG0744|consen 144 LIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF 223 (423)
T ss_pred HhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH
Confidence 3567788888876543322 111 1 38999999999999999998532 122333331
Q ss_pred ----ccChHHHHHHHHhcC-----CCe--eEEEeCCccchhhhhhhh
Q 024362 56 ----LRGNMELRNLLIATE-----NKS--LLVVEDIDCSIELQNRHA 91 (268)
Q Consensus 56 ----~~~d~~L~~lf~~~p-----~~~--IiliEDID~~~~~~~R~~ 91 (268)
.-+..-+..+|+++. +.| -|||||+.+.+. .|..
T Consensus 224 SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~--aR~s 268 (423)
T KOG0744|consen 224 SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA--ARTS 268 (423)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH--HHHh
Confidence 112233466676652 333 468899999886 4543
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=2.9e-05 Score=80.12 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccCh
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGN 59 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d 59 (268)
.+++-|..++.... |||++|||||+++.++|..+++ |++.++.++ ...-
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs-~~gV 101 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS-NTGI 101 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc-cCCH
Confidence 44555666666543 7999999999999999999865 345555444 3444
Q ss_pred HHHHHHHHhc------CCCeeEEEeCCccch
Q 024362 60 MELRNLLIAT------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 60 ~~L~~lf~~~------p~~~IiliEDID~~~ 84 (268)
+.++.++..+ .++.||||||+|...
T Consensus 102 d~IRelle~a~~~P~~gk~KVIIIDEad~Ls 132 (709)
T PRK08691 102 DNIREVLENAQYAPTAGKYKVYIIDEVHMLS 132 (709)
T ss_pred HHHHHHHHHHHhhhhhCCcEEEEEECccccC
Confidence 6788877643 346799999999754
No 101
>PRK06526 transposase; Provisional
Probab=97.93 E-value=4.8e-06 Score=76.20 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=50.0
Q ss_pred HhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 17 MFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 17 ~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+|+.... +|||+|||||+|+.|||..+ |+.++..+.+... .....+...+..+....+|+|||++...
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4665543 79999999999999998875 7888777665421 1223455666777778899999998753
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.93 E-value=1.5e-05 Score=84.04 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=56.4
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-------cChHHHHHHHHh
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-------RGNMELRNLLIA 68 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-------~~d~~L~~lf~~ 68 (268)
.++.+-.-|.++. +||+||||||+++.++|..+ ++.++.++++... .-...|+.+|..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~ 260 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNE 260 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHH
Confidence 3455555454432 89999999999999999986 8899999887632 122467888876
Q ss_pred c---CCCeeEEEeCCccchh
Q 024362 69 T---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ~---p~~~IiliEDID~~~~ 85 (268)
+ +.++||+||||+....
T Consensus 261 ~~~~~~~~ILfIDEih~l~~ 280 (852)
T TIGR03346 261 VTKSEGQIILFIDELHTLVG 280 (852)
T ss_pred HHhcCCCeEEEeccHHHhhc
Confidence 5 4589999999998763
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.92 E-value=3.2e-05 Score=71.42 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccc
Q 024362 9 KMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSA 54 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~ 54 (268)
+.++..+..++.... +|||+|||||+++.++|..+. .++..++.++
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 446677777777654 899999999999999999884 3456666553
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=2.9e-05 Score=74.95 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=44.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCC--------------------------------cEEEEeccccccChHHHHHHHHhc--
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF--------------------------------DVYDLELSALLRGNMELRNLLIAT-- 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~--------------------------------~iy~l~ls~~~~~d~~L~~lf~~~-- 69 (268)
||||+||||||++.++|..++. |++.++..+ ...-+.++.+...+
T Consensus 43 f~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~-~~~id~Ir~l~~~~~~ 121 (397)
T PRK14955 43 FSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS-NNSVDDIRLLRENVRY 121 (397)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc-cCCHHHHHHHHHHHhh
Confidence 8999999999999999999965 344444332 22236677776666
Q ss_pred -C---CCeeEEEeCCccch
Q 024362 70 -E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 70 -p---~~~IiliEDID~~~ 84 (268)
| .+.||+|||+|...
T Consensus 122 ~p~~~~~kvvIIdea~~l~ 140 (397)
T PRK14955 122 GPQKGRYRVYIIDEVHMLS 140 (397)
T ss_pred chhcCCeEEEEEeChhhCC
Confidence 4 46799999999875
No 105
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.92 E-value=3.2e-05 Score=70.66 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC------------------------CcEEEEeccccc
Q 024362 4 DFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN------------------------FDVYDLELSALL 56 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~------------------------~~iy~l~ls~~~ 56 (268)
.+.....+...+..+-+... +|||+|||||+++.++|..+. .+++.++-++..
T Consensus 6 ~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~ 85 (325)
T COG0470 6 WQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR 85 (325)
T ss_pred chhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccC
Confidence 34444555555554432222 799999999999999999998 799999988743
Q ss_pred c---ChHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 57 R---GNMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 57 ~---~d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
. .-+.++.+..... ..-||+|||+|....
T Consensus 86 ~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 86 KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH
Confidence 3 2456666666543 356999999999765
No 106
>PRK08116 hypothetical protein; Validated
Probab=97.91 E-value=1.1e-05 Score=74.30 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--c-------ChHHHHHHHHhcCCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--R-------GNMELRNLLIATENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--~-------~d~~L~~lf~~~p~~~IiliEDID~ 82 (268)
+||++|||||+|+.|||+++ +..++.++.+... + +......++..+....+++|||+..
T Consensus 119 l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 119 LWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 79999999999999999986 7889888876521 0 1122345566666667999999864
No 107
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.91 E-value=1.1e-05 Score=83.69 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=46.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccCh-------------------HHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGN-------------------MELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d-------------------~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
|+||+|||||.|+.+||..++.+++.+++++ .... ..|...+.. .+.|||||||||.+-
T Consensus 489 f~Gp~GvGKT~lA~~la~~l~~~~~~~d~se-~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-~p~~VvllDEieka~ 566 (731)
T TIGR02639 489 FTGPTGVGKTELAKQLAEALGVHLERFDMSE-YMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-HPHCVLLLDEIEKAH 566 (731)
T ss_pred EECCCCccHHHHHHHHHHHhcCCeEEEeCch-hhhcccHHHHhcCCCCCcccchhhHHHHHHHh-CCCeEEEEechhhcC
Confidence 7899999999999999999999999999877 2221 123333333 357999999999875
Q ss_pred h
Q 024362 85 E 85 (268)
Q Consensus 85 ~ 85 (268)
.
T Consensus 567 ~ 567 (731)
T TIGR02639 567 P 567 (731)
T ss_pred H
Confidence 4
No 108
>PRK08727 hypothetical protein; Validated
Probab=97.91 E-value=1.5e-05 Score=71.54 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=45.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|..+ |+.+.++++.. . ...+...+..+....+|+|||||...
T Consensus 46 l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~--~-~~~~~~~~~~l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 46 LSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA--A-AGRLRDALEALEGRSLVALDGLESIA 106 (233)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH--h-hhhHHHHHHHHhcCCEEEEeCccccc
Confidence 68999999999999997664 67777777655 1 13466777788888899999999775
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=3e-05 Score=79.25 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC-----------------------------cEEEEeccc
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF-----------------------------DVYDLELSA 54 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~-----------------------------~iy~l~ls~ 54 (268)
.++.-|..++.... |||++||||||++.++|..+++ |++.++.++
T Consensus 23 ~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas 102 (618)
T PRK14951 23 HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS 102 (618)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc
Confidence 35566667776643 7899999999999999999875 466666544
Q ss_pred cccChHHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 55 LLRGNMELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 55 ~~~~d~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
...-++++.++..+ | +.-|++|||+|....
T Consensus 103 -~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 103 -NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred -ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 33445677777653 2 356999999998754
No 110
>PRK06921 hypothetical protein; Provisional
Probab=97.90 E-value=2.9e-05 Score=71.38 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=43.5
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccccc--c--ChHHHHHHHHhcCCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSALL--R--GNMELRNLLIATENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~~~--~--~d~~L~~lf~~~p~~~IiliEDID~ 82 (268)
+||++|||||.|+.|||+.+ |..++.++..+.. + .-+.+...+..+..-.+|+|||++.
T Consensus 122 l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 122 LLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred EECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 79999999999999999986 6778887765421 0 0123344556677788999999954
No 111
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.89 E-value=7.7e-06 Score=78.76 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=43.0
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+++ +..++.++..... ..+..+..+...+....+|+|||||...
T Consensus 141 l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 141 IYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA 212 (405)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc
Confidence 69999999999999999987 6788888765411 0011122333344556799999999764
No 112
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=4e-05 Score=72.77 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhc----Ccc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--c------ChHHHHHHHHhcC
Q 024362 9 KMIMDDLEMFLK----RKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--R------GNMELRNLLIATE 70 (268)
Q Consensus 9 ~~i~~Di~~Fl~----~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--~------~d~~L~~lf~~~p 70 (268)
+.++.-...|.. ... +||++|||||+|+.|||+.+ |+.|..++..... + .+......+..+.
T Consensus 166 ~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~ 245 (329)
T PRK06835 166 EKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI 245 (329)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence 345554555555 333 89999999999999999987 8888888776521 1 1122233356667
Q ss_pred CCeeEEEeCCccch
Q 024362 71 NKSLLVVEDIDCSI 84 (268)
Q Consensus 71 ~~~IiliEDID~~~ 84 (268)
.--+++|||+....
T Consensus 246 ~~DLLIIDDlG~e~ 259 (329)
T PRK06835 246 NCDLLIIDDLGTEK 259 (329)
T ss_pred cCCEEEEeccCCCC
Confidence 77799999997754
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=97.88 E-value=1.6e-05 Score=71.52 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=41.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+++ +..+++++..+..... ..++..+..--+++||||+...
T Consensus 50 l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~---~~~~~~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 50 LWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---PELLDNLEQYELVCLDDLDVIA 110 (234)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh---HHHHHhhhhCCEEEEechhhhc
Confidence 67999999999999999764 6788888886622222 2333444444589999999764
No 114
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=4.4e-05 Score=76.14 Aligned_cols=73 Identities=11% Similarity=0.180 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhc------------------------CCcEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFL------------------------NFDVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l------------------------~~~iy~l~ls~~~~~d~ 60 (268)
+++=+...+.... |||++||||||++.++|..+ ..|++.++.++ ..+-+
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-~~~vd 99 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-NTSVD 99 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-CCCHH
Confidence 4444555554432 89999999999999999865 45788888876 34556
Q ss_pred HHHHHHHhc---C---CCeeEEEeCCccch
Q 024362 61 ELRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
+++.++..+ | ++-|++|||+|...
T Consensus 100 dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls 129 (491)
T PRK14964 100 DIKVILENSCYLPISSKFKVYIIDEVHMLS 129 (491)
T ss_pred HHHHHHHHHHhccccCCceEEEEeChHhCC
Confidence 677776654 3 46799999998764
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=9.6e-06 Score=79.34 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=44.1
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+++ +..++.++..+.. +.+.....+...+....+|+|||||...
T Consensus 153 l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 153 IYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLA 224 (450)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhc
Confidence 69999999999999999998 6678888765421 1111223344455567799999999864
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.86 E-value=2.6e-05 Score=75.42 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=47.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc-EEEEeccccccChHHHHHHHHhc-------CCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD-VYDLELSALLRGNMELRNLLIAT-------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~-iy~l~ls~~~~~d~~L~~lf~~~-------p~~~IiliEDID~~~ 84 (268)
++||||||||||++.||+--.-+ +..+.+|.-..+-.+++.+|.+. .++.|++||||..+-
T Consensus 167 lWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 167 LWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred EecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 78999999999999999987655 33344444336667888888875 479999999998864
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=4.4e-05 Score=77.04 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=49.1
Q ss_pred HHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHH
Q 024362 12 MDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNME 61 (268)
Q Consensus 12 ~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~ 61 (268)
++-+..++.... |||++|||||+++.++|..++. +++.++..+ ...-+.
T Consensus 25 v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-~~gvd~ 103 (546)
T PRK14957 25 LNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-RTGVEE 103 (546)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc-ccCHHH
Confidence 344555555432 7999999999999999998874 666676533 122234
Q ss_pred HHHHHH---hcC---CCeeEEEeCCccchh
Q 024362 62 LRNLLI---ATE---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 62 L~~lf~---~~p---~~~IiliEDID~~~~ 85 (268)
++.++. ..| .+-|++|||+|....
T Consensus 104 ir~ii~~~~~~p~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 104 TKEILDNIQYMPSQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechhhccH
Confidence 444443 334 467999999998753
No 118
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.85 E-value=5.8e-05 Score=70.44 Aligned_cols=74 Identities=22% Similarity=0.372 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC------------------------CcEEEEeccccccCh
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN------------------------FDVYDLELSALLRGN 59 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~------------------------~~iy~l~ls~~~~~d 59 (268)
.+++.+..++.... +||++|+|||+++.++|..+. .+++.++... ..+-
T Consensus 21 ~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-~~~~ 99 (355)
T TIGR02397 21 HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS-NNGV 99 (355)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-cCCH
Confidence 34455555555432 799999999999999998874 3455555443 2333
Q ss_pred HHHHHHHHhc---C---CCeeEEEeCCccch
Q 024362 60 MELRNLLIAT---E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 60 ~~L~~lf~~~---p---~~~IiliEDID~~~ 84 (268)
+.++.++..+ | .+-||+|||+|...
T Consensus 100 ~~~~~l~~~~~~~p~~~~~~vviidea~~l~ 130 (355)
T TIGR02397 100 DDIREILDNVKYAPSSGKYKVYIIDEVHMLS 130 (355)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEeChhhcC
Confidence 4566666653 3 35699999999764
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=2.7e-05 Score=81.34 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=46.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHH----------------h--cCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLI----------------A--TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~----------------~--~p~~~IiliEDID~~~~ 85 (268)
|+||+|||||.|+.++|..++.+++.+++++ .........||. . -.+.|||||||||.+-.
T Consensus 493 f~GP~GvGKT~lAk~LA~~l~~~~i~id~se-~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~ 571 (758)
T PRK11034 493 FAGPTGVGKTEVTVQLSKALGIELLRFDMSE-YMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcEEeechh-hcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH
Confidence 7899999999999999999999999999887 222222233321 1 13479999999999854
No 120
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.8e-05 Score=80.01 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=47.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccCh-HHH---------------HHHHHhcC-CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGN-MEL---------------RNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d-~~L---------------~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
|+||||.||||++++||..||..++.+|+.. ++| +++ .+.+.++. ..-+|||||||-.|.
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG--~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 443 FVGPPGVGKTSIAKSIARALNRKFFRFSVGG--MTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS 519 (906)
T ss_pred EeCCCCCCcccHHHHHHHHhCCceEEEeccc--cccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC
Confidence 9999999999999999999999999999986 444 443 23333332 355899999999984
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=7.4e-05 Score=70.81 Aligned_cols=73 Identities=16% Similarity=0.309 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------cEEEEeccccccChHHHHHHHHh---c
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------DVYDLELSALLRGNMELRNLLIA---T 69 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------~iy~l~ls~~~~~d~~L~~lf~~---~ 69 (268)
++..+..++.... +||++|+|||+++.++|..++. +++.++-.. ..+-+.++.++.. .
T Consensus 25 ~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~~l~~~~~~~ 103 (367)
T PRK14970 25 ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS-NNSVDDIRNLIDQVRIP 103 (367)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc-CCCHHHHHHHHHHHhhc
Confidence 4455555554432 7999999999999999998743 334343222 2233677777764 2
Q ss_pred C---CCeeEEEeCCccch
Q 024362 70 E---NKSLLVVEDIDCSI 84 (268)
Q Consensus 70 p---~~~IiliEDID~~~ 84 (268)
| .+.||+|||+|...
T Consensus 104 p~~~~~kiviIDE~~~l~ 121 (367)
T PRK14970 104 PQTGKYKIYIIDEVHMLS 121 (367)
T ss_pred cccCCcEEEEEeChhhcC
Confidence 3 46799999999764
No 122
>PRK09183 transposase/IS protein; Provisional
Probab=97.80 E-value=2e-05 Score=72.13 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=50.3
Q ss_pred HHHHHH--HhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccc------cChHHHHHHHHh-cCCCeeE
Q 024362 11 IMDDLE--MFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALL------RGNMELRNLLIA-TENKSLL 75 (268)
Q Consensus 11 i~~Di~--~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~------~~d~~L~~lf~~-~p~~~Ii 75 (268)
.+..+. .|+.... +|||+|||||+|+.|||.. .|+.++.++.++.. ..+..+...|.. +....++
T Consensus 89 ~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlL 168 (259)
T PRK09183 89 QLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLL 168 (259)
T ss_pred HHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEE
Confidence 444443 3555544 7899999999999999766 48888888765421 112235556655 5667899
Q ss_pred EEeCCccc
Q 024362 76 VVEDIDCS 83 (268)
Q Consensus 76 liEDID~~ 83 (268)
+||||+..
T Consensus 169 iiDdlg~~ 176 (259)
T PRK09183 169 IIDEIGYL 176 (259)
T ss_pred EEcccccC
Confidence 99999865
No 123
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=5.3e-05 Score=77.84 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
+++-|...+.... |||++||||||++.++|..++. |++.++.++ ...-+
T Consensus 24 vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-~~~Vd 102 (647)
T PRK07994 24 VLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-RTKVE 102 (647)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-cCCHH
Confidence 3445555555432 7999999999999999999977 456666553 23345
Q ss_pred HHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 61 ELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 61 ~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
.++.+...+. ++-|++|||+|....
T Consensus 103 diR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 103 DTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 6777766542 456999999998753
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.76 E-value=5.4e-05 Score=79.97 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=50.0
Q ss_pred ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-----c--ChHHHHHHHHhc---CCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-----R--GNMELRNLLIAT---ENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-----~--~d~~L~~lf~~~---p~~~IiliEDID~~ 83 (268)
++|+||||||+++.++|..+ +..+|.++++... . -...|+.+|..+ +.++|++||||++.
T Consensus 213 LvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l 292 (852)
T TIGR03345 213 LTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTL 292 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHh
Confidence 89999999999999999876 4778888887621 1 126788888876 35899999999998
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
..
T Consensus 293 ~~ 294 (852)
T TIGR03345 293 IG 294 (852)
T ss_pred cc
Confidence 64
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=9.5e-05 Score=71.83 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhh---------cCcc--ccccCCCCHHHHHHHHHhhcCCc-----------------------EEEE
Q 024362 5 FDVKKMIMDDLEMFL---------KRKD--FHRRVGRGKSSLIAGMANFLNFD-----------------------VYDL 50 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl---------~~~~--~Y~~~GTGKTSl~~AlA~~l~~~-----------------------iy~l 50 (268)
+..++.|.+-+.... -+.. ||||+|+|||+++.++|..+..+ ++.+
T Consensus 11 ~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i 90 (394)
T PRK07940 11 EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVV 90 (394)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 445555655555532 1111 89999999999999999987653 4455
Q ss_pred eccccccChHHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 51 ELSALLRGNMELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 51 ~ls~~~~~d~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
........-++++.++..+ | ++.|++|||+|....
T Consensus 91 ~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 91 APEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE 131 (394)
T ss_pred ccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH
Confidence 4433234556788887764 2 467999999999854
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00012 Score=75.02 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC--------------------------------cEEEEe
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF--------------------------------DVYDLE 51 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~--------------------------------~iy~l~ 51 (268)
.++.-|..++.... |||++|||||+++.++|..++. |+..++
T Consensus 23 ~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d 102 (620)
T PRK14954 23 HITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFD 102 (620)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEec
Confidence 34445666665532 7999999999999999999976 333444
Q ss_pred ccccccChHHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 52 LSALLRGNMELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 52 ls~~~~~d~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
..+ ...-+.++.+...+ | .+-||+|||+|....
T Consensus 103 ~~s-~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 103 AAS-NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST 141 (620)
T ss_pred ccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH
Confidence 322 22346777777666 3 467999999998753
No 127
>PRK06620 hypothetical protein; Validated
Probab=97.68 E-value=4.7e-05 Score=67.81 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=33.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~ 82 (268)
+||++|||||+|+.|+|+..+. |.++... ..+. .+ ....+++|||||.
T Consensus 49 l~Gp~G~GKThLl~a~~~~~~~--~~~~~~~--~~~~----~~---~~~d~lliDdi~~ 96 (214)
T PRK06620 49 IKGPSSSGKTYLTKIWQNLSNA--YIIKDIF--FNEE----IL---EKYNAFIIEDIEN 96 (214)
T ss_pred EECCCCCCHHHHHHHHHhccCC--EEcchhh--hchh----HH---hcCCEEEEecccc
Confidence 6999999999999999999875 4433221 1221 11 2346899999994
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00014 Score=74.48 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC--------------------------cEEEEecccccc
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF--------------------------DVYDLELSALLR 57 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~--------------------------~iy~l~ls~~~~ 57 (268)
.++.-|..++.... |||++|||||+++.++|..++. |++.++-.. ..
T Consensus 23 ~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~-~~ 101 (620)
T PRK14948 23 AIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAAS-NT 101 (620)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccc-cC
Confidence 34455555555432 8999999999999999999875 455554432 23
Q ss_pred ChHHHHHHHHhcC------CCeeEEEeCCccch
Q 024362 58 GNMELRNLLIATE------NKSLLVVEDIDCSI 84 (268)
Q Consensus 58 ~d~~L~~lf~~~p------~~~IiliEDID~~~ 84 (268)
.-+.++.++..+. .+-||+|||+|...
T Consensus 102 ~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt 134 (620)
T PRK14948 102 GVDNIRELIERAQFAPVQARWKVYVIDECHMLS 134 (620)
T ss_pred CHHHHHHHHHHHhhChhcCCceEEEEECccccC
Confidence 4467777776542 45699999999874
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00013 Score=74.12 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccCh
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGN 59 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d 59 (268)
.+++.|..++.... |||++|||||+++.++|..++. |++.++..+ ...-
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-~~~v 101 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-NTGV 101 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-ccCH
Confidence 34455556655432 8999999999999999999864 355666544 2233
Q ss_pred HHHHHHHHh---cC---CCeeEEEeCCccchh
Q 024362 60 MELRNLLIA---TE---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 60 ~~L~~lf~~---~p---~~~IiliEDID~~~~ 85 (268)
++++.+... .| ++-|++|||+|....
T Consensus 102 ~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 102 DDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred HHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 455555544 34 356999999998753
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00015 Score=72.26 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccCh
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGN 59 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d 59 (268)
.++.-+...+.... |||++|||||+++.++|..++. |++.++.++ ...-
T Consensus 23 ~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas-~~gv 101 (486)
T PRK14953 23 IVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS-NRGI 101 (486)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc-CCCH
Confidence 34455566665532 7999999999999999999863 466666544 2333
Q ss_pred HHH---HHHHHhcC---CCeeEEEeCCccch
Q 024362 60 MEL---RNLLIATE---NKSLLVVEDIDCSI 84 (268)
Q Consensus 60 ~~L---~~lf~~~p---~~~IiliEDID~~~ 84 (268)
+.+ ...+...| .+.|++|||+|...
T Consensus 102 d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt 132 (486)
T PRK14953 102 DDIRALRDAVSYTPIKGKYKVYIIDEAHMLT 132 (486)
T ss_pred HHHHHHHHHHHhCcccCCeeEEEEEChhhcC
Confidence 334 44444455 46799999999764
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00013 Score=71.83 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC-------------------------cEEEEeccccccC
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF-------------------------DVYDLELSALLRG 58 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~-------------------------~iy~l~ls~~~~~ 58 (268)
.++..+..++.... |||++|||||+++.++|..+.. +++.++..+ ...
T Consensus 24 ~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~-~~g 102 (451)
T PRK06305 24 AVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS-HRG 102 (451)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc-cCC
Confidence 34556666665432 7999999999999999998853 455555432 222
Q ss_pred hHHHHHHHHhc------CCCeeEEEeCCccch
Q 024362 59 NMELRNLLIAT------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 59 d~~L~~lf~~~------p~~~IiliEDID~~~ 84 (268)
-+.++.+...+ ..+.||+|||+|...
T Consensus 103 id~ir~i~~~l~~~~~~~~~kvvIIdead~lt 134 (451)
T PRK06305 103 IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT 134 (451)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC
Confidence 34555544443 357899999999874
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=3.8e-05 Score=75.35 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=41.1
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cChHHHHHHHHhcC-CCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGNMELRNLLIATE-NKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d~~L~~lf~~~p-~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+++ +..+++++..... +....+........ ...++||||||...
T Consensus 135 lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 135 IYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred EEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 68999999999999999986 5678887765410 01111222222222 46799999999764
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.64 E-value=0.00022 Score=65.29 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC---C--cEEEEeccccccCh----HHHHHHHHhcC----C
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN---F--DVYDLELSALLRGN----MELRNLLIATE----N 71 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~---~--~iy~l~ls~~~~~d----~~L~~lf~~~p----~ 71 (268)
+++.-+..++.... +||++|||||+++.++|+.+. + +++.++.+. .... ..+..+....| .
T Consensus 24 ~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 102 (319)
T PRK00440 24 EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD-ERGIDVIRNKIKEFARTAPVGGAP 102 (319)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc-ccchHHHHHHHHHHHhcCCCCCCC
Confidence 45556666665542 899999999999999999872 2 334443333 1121 22333333333 2
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
+.+|+|||+|....
T Consensus 103 ~~vviiDe~~~l~~ 116 (319)
T PRK00440 103 FKIIFLDEADNLTS 116 (319)
T ss_pred ceEEEEeCcccCCH
Confidence 56999999998753
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00018 Score=72.95 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
++..+..++.... |||++|||||+++.++|..++. |++.++..+ ...-+
T Consensus 24 iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-~~~vd 102 (563)
T PRK06647 24 VVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-NTSVQ 102 (563)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc-cCCHH
Confidence 3444555554432 8999999999999999999864 455555433 23335
Q ss_pred HHHHHHH---hcC---CCeeEEEeCCccch
Q 024362 61 ELRNLLI---ATE---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~lf~---~~p---~~~IiliEDID~~~ 84 (268)
+++.+.. ..| .+-|++|||+|...
T Consensus 103 dIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls 132 (563)
T PRK06647 103 DVRQIKEEIMFPPASSRYRVYIIDEVHMLS 132 (563)
T ss_pred HHHHHHHHHHhchhcCCCEEEEEEChhhcC
Confidence 6666653 233 46799999999874
No 135
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.62 E-value=4.3e-05 Score=68.19 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=45.9
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
.||++|+|||.|..|+++++ +..|.+++..... +.+..+..+...+..--+++||||+....
T Consensus 39 l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 39 LYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred EECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence 58999999999999999875 6678888765521 12233455556677778999999999764
No 136
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.00017 Score=73.25 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=42.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCC-------------------------cEEEEeccccccChHHHHHHHHhc------CCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF-------------------------DVYDLELSALLRGNMELRNLLIAT------ENK 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~-------------------------~iy~l~ls~~~~~d~~L~~lf~~~------p~~ 72 (268)
|||++|||||+++.++|..++. |++.++.+. ..+-+.++.+...+ ..+
T Consensus 43 f~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~-~~~vd~ir~ii~~~~~~p~~~~~ 121 (585)
T PRK14950 43 FTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS-HTSVDDAREIIERVQFRPALARY 121 (585)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc-cCCHHHHHHHHHHHhhCcccCCe
Confidence 7999999999999999988752 344455432 34445566665432 246
Q ss_pred eeEEEeCCccch
Q 024362 73 SLLVVEDIDCSI 84 (268)
Q Consensus 73 ~IiliEDID~~~ 84 (268)
-||+|||+|...
T Consensus 122 kVvIIDEa~~L~ 133 (585)
T PRK14950 122 KVYIIDEVHMLS 133 (585)
T ss_pred EEEEEeChHhCC
Confidence 799999999764
No 137
>PF13173 AAA_14: AAA domain
Probab=97.62 E-value=6.9e-05 Score=60.74 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=45.8
Q ss_pred ccccCCCCHHHHHHHHHhhcC--CcEEEEeccccccC---hHHHHHHHHhc--CCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--FDVYDLELSALLRG---NMELRNLLIAT--ENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--~~iy~l~ls~~~~~---d~~L~~lf~~~--p~~~IiliEDID~~~ 84 (268)
.+|+||+|||+|+.-+|..+. -++..+++.+.... +..+...+.+. +.+++|+||||..+-
T Consensus 7 l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 7 LTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred EECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc
Confidence 589999999999999999887 88999998873221 11133444443 468999999998874
No 138
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=6.8e-05 Score=76.92 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCcc----------ccccCCCCHHHHHHHHHhhcCCcEEEE-ecc----------------c----cccCh
Q 024362 11 IMDDLEMFLKRKD----------FHRRVGRGKSSLIAGMANFLNFDVYDL-ELS----------------A----LLRGN 59 (268)
Q Consensus 11 i~~Di~~Fl~~~~----------~Y~~~GTGKTSl~~AlA~~l~~~iy~l-~ls----------------~----~~~~d 59 (268)
.+.++..|+.+.. +|||+|||||+++.++|+.++++++.. +-. + ....-
T Consensus 92 ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~ 171 (637)
T TIGR00602 92 KIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQI 171 (637)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchH
Confidence 4456666665421 699999999999999999999876542 100 0 00112
Q ss_pred HHHHHHHHhc------------CCCeeEEEeCCccchh
Q 024362 60 MELRNLLIAT------------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 60 ~~L~~lf~~~------------p~~~IiliEDID~~~~ 85 (268)
+.+..++..+ +.+.||||||||.++.
T Consensus 172 ~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~ 209 (637)
T TIGR00602 172 EVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY 209 (637)
T ss_pred HHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch
Confidence 4445544432 3577999999998764
No 139
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=4.5e-05 Score=75.08 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+.+ +..+.+++..... .....+..+-.......+++||||+...
T Consensus 146 L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 146 LFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhc
Confidence 79999999999999999987 6888888765411 0111111222224566799999999864
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00018 Score=73.72 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~ 60 (268)
++.-|..++.... |||++|||||+++.++|..++. |++.++.++ ...-+
T Consensus 24 v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-~~~Id 102 (624)
T PRK14959 24 VKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-NRGID 102 (624)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-ccCHH
Confidence 4455566665543 7999999999999999999975 366665432 12223
Q ss_pred HHHHH---HHhcC---CCeeEEEeCCccch
Q 024362 61 ELRNL---LIATE---NKSLLVVEDIDCSI 84 (268)
Q Consensus 61 ~L~~l---f~~~p---~~~IiliEDID~~~ 84 (268)
.++.+ +...| .+.||+|||+|...
T Consensus 103 ~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt 132 (624)
T PRK14959 103 DAKRLKEAIGYAPMEGRYKVFIIDEAHMLT 132 (624)
T ss_pred HHHHHHHHHHhhhhcCCceEEEEEChHhCC
Confidence 44443 33333 46799999999874
No 141
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.00011 Score=75.81 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=48.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc----------CCCeeEEEeCCccch
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT----------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~----------p~~~IiliEDID~~~ 84 (268)
.|++|-||||||+.||.+.||.+..||.|+ ..+...++.-+..+ .+|.-++|||||.+.
T Consensus 332 ~GppGlGKTTLAHViAkqaGYsVvEINASD-eRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 332 CGPPGLGKTTLAHVIAKQAGYSVVEINASD-ERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ecCCCCChhHHHHHHHHhcCceEEEecccc-cccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 588999999999999999999999999998 67777766544432 345557799999986
No 142
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.58 E-value=0.00015 Score=62.24 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=44.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHHHHHHHHhc---C---CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNMELRNLLIAT---E---NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~L~~lf~~~---p---~~~ 73 (268)
+||++|+|||+++.++|..+.. |++.++......+-+.++.++..+ | .+.
T Consensus 19 ~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k 98 (188)
T TIGR00678 19 FAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRR 98 (188)
T ss_pred EECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccCCeE
Confidence 7999999999999999999753 456665544234446666555543 3 467
Q ss_pred eEEEeCCccchh
Q 024362 74 LLVVEDIDCSIE 85 (268)
Q Consensus 74 IiliEDID~~~~ 85 (268)
||+|||+|....
T Consensus 99 viiide~~~l~~ 110 (188)
T TIGR00678 99 VVIIEDAERMNE 110 (188)
T ss_pred EEEEechhhhCH
Confidence 999999998754
No 143
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.55 E-value=8.6e-05 Score=77.57 Aligned_cols=62 Identities=24% Similarity=0.469 Sum_probs=48.1
Q ss_pred ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-------cChHHHHHHHHhc--CCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-------RGNMELRNLLIAT--ENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-------~~d~~L~~lf~~~--p~~~IiliEDID~~~ 84 (268)
.||++|||||+++.++|... +..+|.++++... ..+..++.+|..+ ..++|++|||||...
T Consensus 212 LvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~ 291 (758)
T PRK11034 212 LVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291 (758)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHh
Confidence 79999999999999999764 7788888776522 1235577777655 357899999999876
Q ss_pred h
Q 024362 85 E 85 (268)
Q Consensus 85 ~ 85 (268)
.
T Consensus 292 g 292 (758)
T PRK11034 292 G 292 (758)
T ss_pred c
Confidence 4
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=8.5e-05 Score=73.21 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=43.9
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cCh--HHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGN--MELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d--~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.|+|+++ ++.+++++..+.. +.. ..+..+........+++||||+...
T Consensus 146 i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 146 IYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccccc
Confidence 69999999999999999965 5788888765521 011 2344444455667799999999765
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=6.7e-05 Score=76.60 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=44.0
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccc------cChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALL------RGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~------~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.|||+++ ++.+++++..... +.+..+..+........+||||||+....
T Consensus 319 LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 319 IYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED 391 (617)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC
Confidence 58999999999999999987 6788888876521 01111222333445678999999998754
No 146
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.53 E-value=0.0002 Score=67.24 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=50.4
Q ss_pred HHHHHhhcCcc--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHH--HHHHh----------cC----CC--
Q 024362 13 DDLEMFLKRKD--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELR--NLLIA----------TE----NK-- 72 (268)
Q Consensus 13 ~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~--~lf~~----------~p----~~-- 72 (268)
.-+..++.... .=|+||||||.|+.++|..+++++..+.++. .++.+++- ..+.. .+ ..
T Consensus 35 ~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~-~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 35 LALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP-DLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR 113 (329)
T ss_pred HHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC-CCCHHHhcCchhHhhhhccCCeEEEecCCcccccc
Confidence 33444444444 4589999999999999999999999999987 55444431 12221 11 12
Q ss_pred eeEEEeCCccchh
Q 024362 73 SLLVVEDIDCSIE 85 (268)
Q Consensus 73 ~IiliEDID~~~~ 85 (268)
+|+++|||+.+..
T Consensus 114 ~ill~DEInra~p 126 (329)
T COG0714 114 VILLLDEINRAPP 126 (329)
T ss_pred eEEEEeccccCCH
Confidence 3999999999864
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.00027 Score=73.44 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=42.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC---------------------cEEEEeccccccChHHHHHHHHhc---C---CCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF---------------------DVYDLELSALLRGNMELRNLLIAT---E---NKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~---------------------~iy~l~ls~~~~~d~~L~~lf~~~---p---~~~Iil 76 (268)
||||+|||||++|.++|..+.. +++.++..+ ...-+.++.+...+ | .+.|++
T Consensus 45 F~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas-n~~vd~IReLie~~~~~P~~g~~KV~I 123 (725)
T PRK07133 45 FSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS-NNGVDEIRELIENVKNLPTQSKYKIYI 123 (725)
T ss_pred EECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc-cCCHHHHHHHHHHHHhchhcCCCEEEE
Confidence 8999999999999999998854 334444322 22334466655543 3 477999
Q ss_pred EeCCccch
Q 024362 77 VEDIDCSI 84 (268)
Q Consensus 77 iEDID~~~ 84 (268)
|||+|...
T Consensus 124 IDEa~~LT 131 (725)
T PRK07133 124 IDEVHMLS 131 (725)
T ss_pred EEChhhCC
Confidence 99999864
No 148
>PHA02624 large T antigen; Provisional
Probab=97.51 E-value=0.00025 Score=72.40 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCc
Q 024362 8 KKMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDID 81 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID 81 (268)
...++.=++.|+++.. +|||+|||||+|++||+..||-.+..++.+. +.+.--+.-+...-++||||+-
T Consensus 414 ~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt-----~ks~FwL~pl~D~~~~l~dD~t 488 (647)
T PHA02624 414 DDVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP-----DKLNFELGCAIDQFMVVFEDVK 488 (647)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc-----chhHHHhhhhhhceEEEeeecc
Confidence 3566667788887642 8999999999999999999954444455332 4455555666677899999986
Q ss_pred cc
Q 024362 82 CS 83 (268)
Q Consensus 82 ~~ 83 (268)
..
T Consensus 489 ~~ 490 (647)
T PHA02624 489 GQ 490 (647)
T ss_pred cc
Confidence 44
No 149
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00042 Score=69.91 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC------------------------CcEEEEeccccccChH
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN------------------------FDVYDLELSALLRGNM 60 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~------------------------~~iy~l~ls~~~~~d~ 60 (268)
++.-+..++.... |||++|||||+++.++|..+. ++++.++.++ ...=+
T Consensus 22 v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-~~gId 100 (535)
T PRK08451 22 VSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-NRGID 100 (535)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-ccCHH
Confidence 3455555555442 799999999999999999873 3566665443 22346
Q ss_pred HHHHHHHh---cC---CCeeEEEeCCccchh
Q 024362 61 ELRNLLIA---TE---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 61 ~L~~lf~~---~p---~~~IiliEDID~~~~ 85 (268)
.++.++.. .| ++-|++|||+|....
T Consensus 101 ~IRelie~~~~~P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 101 DIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred HHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 78877765 33 466999999988753
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.47 E-value=0.00011 Score=77.39 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=44.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChH-------------------HHHHHHHhcCCCeeEEEeCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNM-------------------ELRNLLIATENKSLLVVEDID 81 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~-------------------~L~~lf~~~p~~~IiliEDID 81 (268)
|+||+|||||+|+.+||..+ +.++..+++++. .... .|...+.. .+.|||||||||
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~-~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeie 621 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY-MEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIE 621 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc-cccccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChh
Confidence 68999999999999999987 467888888762 2221 23333333 346999999999
Q ss_pred cchh
Q 024362 82 CSIE 85 (268)
Q Consensus 82 ~~~~ 85 (268)
.+-.
T Consensus 622 ka~~ 625 (821)
T CHL00095 622 KAHP 625 (821)
T ss_pred hCCH
Confidence 8754
No 151
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.00038 Score=71.05 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=43.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc-----------------------------EEEEeccccccChHHHHHHHHhc---C-
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD-----------------------------VYDLELSALLRGNMELRNLLIAT---E- 70 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~-----------------------------iy~l~ls~~~~~d~~L~~lf~~~---p- 70 (268)
+||++|||||+++.++|..+++. ++.++..+ ...-++++.++..+ |
T Consensus 51 ~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s-~~gvd~IReIie~~~~~P~ 129 (598)
T PRK09111 51 LTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAAS-HTGVDDIREIIESVRYRPV 129 (598)
T ss_pred EECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccc-cCCHHHHHHHHHHHHhchh
Confidence 79999999999999999998753 33443332 23345677766544 3
Q ss_pred --CCeeEEEeCCccch
Q 024362 71 --NKSLLVVEDIDCSI 84 (268)
Q Consensus 71 --~~~IiliEDID~~~ 84 (268)
.+-||+|||+|...
T Consensus 130 ~a~~KVvIIDEad~Ls 145 (598)
T PRK09111 130 SARYKVYIIDEVHMLS 145 (598)
T ss_pred cCCcEEEEEEChHhCC
Confidence 47799999998875
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.43 E-value=0.00045 Score=73.06 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhc-------Ccc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHH-----
Q 024362 5 FDVKKMIMDDLEMFLK-------RKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLL----- 66 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~-------~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf----- 66 (268)
+...+.|..-|..... |.. |+||+|||||.++.+||..+ +.++..++++. ......+..|+
T Consensus 571 ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~-~~~~~~~~~l~g~~~g 649 (852)
T TIGR03346 571 DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSE-YMEKHSVARLIGAPPG 649 (852)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechh-hcccchHHHhcCCCCC
Confidence 4445566666666532 112 78999999999999999987 46888888876 32322223222
Q ss_pred -----------H--hcCCCeeEEEeCCccchh
Q 024362 67 -----------I--ATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 67 -----------~--~~p~~~IiliEDID~~~~ 85 (268)
. ...+.+||||||||.+-.
T Consensus 650 ~~g~~~~g~l~~~v~~~p~~vlllDeieka~~ 681 (852)
T TIGR03346 650 YVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP 681 (852)
T ss_pred ccCcccccHHHHHHHcCCCcEEEEeccccCCH
Confidence 1 123568999999998754
No 153
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.43 E-value=0.00017 Score=57.35 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.5
Q ss_pred ccccCCCCHHHHHHHHHhhc--------CCcEEEEecccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL--------NFDVYDLELSAL 55 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l--------~~~iy~l~ls~~ 55 (268)
.||++|+|||+++..++..+ ..+++.++++..
T Consensus 9 i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 58999999999999999998 788888888773
No 154
>PHA00729 NTP-binding motif containing protein
Probab=97.39 E-value=0.00014 Score=65.85 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=37.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccc---------cccChHHHHHHHHh----cCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSA---------LLRGNMELRNLLIA----TENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~---------~~~~d~~L~~lf~~----~p~~~IiliEDID~~~ 84 (268)
.+|+||||||+||.+||..++.+++.+++.. ...+-+.|...+.. ....-+++|||+-.-.
T Consensus 22 ItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 22 IFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWL 95 (226)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhh
Confidence 6899999999999999999875444432211 11233334333332 2222488999965443
No 155
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00051 Score=66.18 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcCCc-----EEEEeccccccChHHHHHHHH-------
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLNFD-----VYDLELSALLRGNMELRNLLI------- 67 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~~~-----iy~l~ls~~~~~d~~L~~lf~------- 67 (268)
+++.+.+...+..++++.. .||++|||||+.+.-++.++.-. ++.+|--.......-+..+++
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~ 102 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL 102 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC
Confidence 4556666666777776643 79999999999999999998555 677765442111222333333
Q ss_pred --------------hcC---CCeeEEEeCCccchh
Q 024362 68 --------------ATE---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 --------------~~p---~~~IiliEDID~~~~ 85 (268)
.++ ..-||+|||||....
T Consensus 103 ~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 103 TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 222 377999999999875
No 156
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.38 E-value=0.00011 Score=77.64 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=44.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccCh-------------------HHHHHHHHhcCCCeeEEEeCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGN-------------------MELRNLLIATENKSLLVVEDID 81 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d-------------------~~L~~lf~~~p~~~IiliEDID 81 (268)
|.||+|||||.|+.+||..+ .-.++.+++++ .... ..|...+.. .+.|||||||||
T Consensus 601 f~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse-~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEie 678 (852)
T TIGR03345 601 LVGPSGVGKTETALALAELLYGGEQNLITINMSE-FQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVE 678 (852)
T ss_pred EECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHH-hhhhhhhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechh
Confidence 67999999999999999998 45788888876 2211 224444444 467999999999
Q ss_pred cchh
Q 024362 82 CSIE 85 (268)
Q Consensus 82 ~~~~ 85 (268)
.+-.
T Consensus 679 ka~~ 682 (852)
T TIGR03345 679 KAHP 682 (852)
T ss_pred hcCH
Confidence 7654
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.00056 Score=70.04 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC-------------------------CcEEEEeccccccCh
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN-------------------------FDVYDLELSALLRGN 59 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~-------------------------~~iy~l~ls~~~~~d 59 (268)
+++.|..++.... |||++|+|||+++.++|..++ +|++.++.++ ..+-
T Consensus 25 ~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-~~~v 103 (614)
T PRK14971 25 LTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS-NNSV 103 (614)
T ss_pred HHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc-cCCH
Confidence 3444555554432 899999999999999999885 5777777654 3344
Q ss_pred HHHHHHHHhc---C---CCeeEEEeCCccchh
Q 024362 60 MELRNLLIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 60 ~~L~~lf~~~---p---~~~IiliEDID~~~~ 85 (268)
+.++.++..+ | .+-||+|||+|....
T Consensus 104 d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 104 DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 6777777443 3 366999999998753
No 158
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.34 E-value=0.00032 Score=63.48 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=51.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC-CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
-+||.|||||..++++|..||..+++.+-+. .++-..+.++|..+- ..+-+++||++..-.
T Consensus 37 ~~GpagtGKtetik~La~~lG~~~~vfnc~~-~~~~~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 37 LSGPAGTGKTETIKDLARALGRFVVVFNCSE-QMDYQSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp EESSTTSSHHHHHHHHHHCTT--EEEEETTS-SS-HHHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CcCCCCCCchhHHHHHHHHhCCeEEEecccc-cccHHHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 6899999999999999999999999999988 888899999998764 589999999998653
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.32 E-value=0.00084 Score=66.50 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc-----EEEEeccc------------cc-----cChHHHHHHHHhc----CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD-----VYDLELSA------------LL-----RGNMELRNLLIAT----ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~-----iy~l~ls~------------~~-----~~d~~L~~lf~~~----p~~~Iili 77 (268)
+||+||||||+++.++|..++.. +..+..+. +. ..+.-+.+++..+ ..++|++|
T Consensus 199 l~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliI 278 (459)
T PRK11331 199 LQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFII 278 (459)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEE
Confidence 89999999999999999988542 11111111 00 1122344444443 35899999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
||||.+..
T Consensus 279 DEINRani 286 (459)
T PRK11331 279 DEINRANL 286 (459)
T ss_pred ehhhccCH
Confidence 99999875
No 160
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00038 Score=66.36 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=49.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc---ccCh----HHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL---LRGN----MELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~---~~~d----~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
.-||.|+|||-|+..||..|+.+|.+-+.+.. +.-. +-|.+|++... .+.||.|||||-+..
T Consensus 102 LiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 102 LIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 35899999999999999999999999987762 2222 34567777653 589999999999764
No 161
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.28 E-value=0.0018 Score=58.06 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhcC
Q 024362 4 DFDVKKMIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.....+.++..+...+.... .+|++|+|||+++..+++.+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34556678888888776543 689999999999999999986
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=97.28 E-value=0.0097 Score=63.12 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=44.5
Q ss_pred cCCCCHHHHHHHHHhhc-----CCcEEEEeccccccChHHHHHHHHhc----C----CCeeEEEeCCccchh
Q 024362 27 RVGRGKSSLIAGMANFL-----NFDVYDLELSALLRGNMELRNLLIAT----E----NKSLLVVEDIDCSIE 85 (268)
Q Consensus 27 ~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~~~d~~L~~lf~~~----p----~~~IiliEDID~~~~ 85 (268)
|++.||||+|.|||+.+ +.+++.+|.|+ ..+-+.++.++..+ | +.-||+|||+|....
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd-~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~ 644 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASD-ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 644 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCC-cccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH
Confidence 56699999999999998 66899999887 34445677665432 2 236999999999854
No 163
>PHA02774 E1; Provisional
Probab=97.27 E-value=0.00055 Score=69.57 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCcEEE-EeccccccChHHHHHHHHhcCCCeeEEEeCC
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFDVYD-LELSALLRGNMELRNLLIATENKSLLVVEDI 80 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~iy~-l~ls~~~~~d~~L~~lf~~~p~~~IiliEDI 80 (268)
.++..++.|+++.- +|||||||||.|+.+|++.++-.++. +|..+ .--|+.+...-|+||||.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s--------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS--------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc--------ccccchhccCCEEEEecC
Confidence 57788999998632 89999999999999999999766544 55332 111555666679999998
No 164
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.27 E-value=0.0034 Score=57.92 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-C--Cc--EEEEeccccccChHHHH---HHHHh----cC--
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-N--FD--VYDLELSALLRGNMELR---NLLIA----TE-- 70 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-~--~~--iy~l~ls~~~~~d~~L~---~lf~~----~p-- 70 (268)
+.+.-++-|.+... +-||||||||+-+.|||..| | |. +..+|.|+ ...=+-.+ +.|.. +|
T Consensus 34 ~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd-eRGIDvVRn~IK~FAQ~kv~lp~g 112 (333)
T KOG0991|consen 34 DTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD-ERGIDVVRNKIKMFAQKKVTLPPG 112 (333)
T ss_pred HHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc-ccccHHHHHHHHHHHHhhccCCCC
Confidence 34555666666553 67999999999999999987 3 22 33344433 11112232 34443 34
Q ss_pred CCeeEEEeCCccchh
Q 024362 71 NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 ~~~IiliEDID~~~~ 85 (268)
++-||+|||-|+...
T Consensus 113 rhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 113 RHKIIILDEADSMTA 127 (333)
T ss_pred ceeEEEeeccchhhh
Confidence 367999999999865
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.25 E-value=0.00034 Score=74.07 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=43.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH------------------hcCCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI------------------ATENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~------------------~~p~~~IiliEDID~ 82 (268)
|+||+|||||+|+.+||..+ +..++.++++. .........||. ...+.++|+||||+.
T Consensus 603 f~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se-~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEiek 681 (857)
T PRK10865 603 FLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE-FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK 681 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH-hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhh
Confidence 67999999999999999987 45688888876 222222333331 112458999999997
Q ss_pred chh
Q 024362 83 SIE 85 (268)
Q Consensus 83 ~~~ 85 (268)
+-.
T Consensus 682 a~~ 684 (857)
T PRK10865 682 AHP 684 (857)
T ss_pred CCH
Confidence 653
No 166
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00024 Score=74.14 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=54.2
Q ss_pred ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHHHHHHHhcC------------------CCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMELRNLLIATE------------------NKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L~~lf~~~p------------------~~~IiliEDID~ 82 (268)
|-||.|+|||-|+++||..|. -.+..+|+|+ .+....+.+|+...| +.||||+|||.-
T Consensus 526 F~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSE-y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 526 FLGPTGVGKTELAKALAEALFGDEQALIRIDMSE-YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred eeCCCcccHHHHHHHHHHHhcCCCccceeechHH-HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh
Confidence 559999999999999999998 8999999999 888888899888865 589999999998
Q ss_pred chh
Q 024362 83 SIE 85 (268)
Q Consensus 83 ~~~ 85 (268)
+=.
T Consensus 605 AHp 607 (786)
T COG0542 605 AHP 607 (786)
T ss_pred cCH
Confidence 743
No 167
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.22 E-value=0.00015 Score=57.37 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=38.0
Q ss_pred ccccCCCCHHHHHHHHHhhcC--------CcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--------FDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--------~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
.||++|+|||+|+.-||..+. .++|..+.. .+.+..-....++++||+.+...
T Consensus 3 i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~---------~~~w~gY~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG---------DKFWDGYQGQPVVIIDDFGQDND 63 (107)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc---------cchhhccCCCcEEEEeecCcccc
Confidence 589999999999999887765 345543222 23345555678899999888753
No 168
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.17 E-value=0.00029 Score=55.52 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=25.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.|++|+||||++..||..+|+.++.++-
T Consensus 5 ~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 5899999999999999999998877765
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0017 Score=60.41 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC--------cEEEEec-cccccChHHHHHHHHhc---C--
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF--------DVYDLEL-SALLRGNMELRNLLIAT---E-- 70 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~--------~iy~l~l-s~~~~~d~~L~~lf~~~---p-- 70 (268)
+++.+...+.... |||+.|+|||+++.++|..+.. |++.+.. .....+-++++.+...+ |
T Consensus 12 ~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~ 91 (313)
T PRK05564 12 IKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYE 91 (313)
T ss_pred HHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCccc
Confidence 3344455554432 8999999999999999998732 5555544 22234556788887743 3
Q ss_pred -CCeeEEEeCCccchh
Q 024362 71 -NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 -~~~IiliEDID~~~~ 85 (268)
.+-|++|+++|....
T Consensus 92 ~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 92 GDKKVIIIYNSEKMTE 107 (313)
T ss_pred CCceEEEEechhhcCH
Confidence 467999999988743
No 170
>PRK09087 hypothetical protein; Validated
Probab=97.15 E-value=0.00052 Score=61.62 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~ 83 (268)
+||++|+|||+|+.|+|...+.. +++... .+.+-+..+. . .+|+|||||..
T Consensus 49 l~G~~GsGKThLl~~~~~~~~~~--~i~~~~--~~~~~~~~~~----~-~~l~iDDi~~~ 99 (226)
T PRK09087 49 LAGPVGSGKTHLASIWREKSDAL--LIHPNE--IGSDAANAAA----E-GPVLIEDIDAG 99 (226)
T ss_pred EECCCCCCHHHHHHHHHHhcCCE--EecHHH--cchHHHHhhh----c-CeEEEECCCCC
Confidence 68999999999999999887655 333322 2333333222 2 47888999975
No 171
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.08 E-value=0.00082 Score=64.74 Aligned_cols=64 Identities=23% Similarity=0.192 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcC----cc---ccccCCCCHHHHHHHHHhhcCC-------cEEEEec----ccc-----ccChHH
Q 024362 5 FDVKKMIMDDLEMFLKR----KD---FHRRVGRGKSSLIAGMANFLNF-------DVYDLEL----SAL-----LRGNME 61 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~----~~---~Y~~~GTGKTSl~~AlA~~l~~-------~iy~l~l----s~~-----~~~d~~ 61 (268)
++.+++|++.++..... +. +.||||||||||+.+||+.++. .+|.+.. +.. .+-...
T Consensus 57 ~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~ 136 (361)
T smart00763 57 EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDE 136 (361)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHH
Confidence 45678888888887762 12 6899999999999999999987 9999988 431 234466
Q ss_pred HHHHHHh
Q 024362 62 LRNLLIA 68 (268)
Q Consensus 62 L~~lf~~ 68 (268)
++..|..
T Consensus 137 ~r~~~~~ 143 (361)
T smart00763 137 LREDLED 143 (361)
T ss_pred HHHHHHH
Confidence 6666644
No 172
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00075 Score=69.84 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCc----c--ccccCCCCHHHHHHHHHhhcCCcEE----EEecccc-ccChHH----HHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRK----D--FHRRVGRGKSSLIAGMANFLNFDVY----DLELSAL-LRGNME----LRNLL 66 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~----~--~Y~~~GTGKTSl~~AlA~~l~~~iy----~l~ls~~-~~~d~~----L~~lf 66 (268)
+..+..|++..+ .+++|- . .||+.|||||.|++||+.++..|.| .++-+.. ...-+. |+..|
T Consensus 411 i~~~s~kke~~n---~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf 487 (952)
T KOG0735|consen 411 IQVPSYKKENAN---QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF 487 (952)
T ss_pred eecchhhhhhhh---hhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH
Confidence 345566666555 555552 1 7899999999999999999965433 2333321 111233 34444
Q ss_pred Hhc--CCCeeEEEeCCccchh
Q 024362 67 IAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 67 ~~~--p~~~IiliEDID~~~~ 85 (268)
... -.|+||+|||+||.+.
T Consensus 488 se~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred HHHHhhCCcEEEEcchhhhhc
Confidence 443 3599999999999875
No 173
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00094 Score=65.88 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=49.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc---ccC----hHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL---LRG----NMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~---~~~----d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
.-||.|+|||-|+.-||..++.+|.+++-+.. +.- ++-+.+|+..+. .+-||+|||||-+..
T Consensus 231 llGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 231 LLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred EECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 46899999999999999999999999997763 221 245677777664 588999999999874
No 174
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.02 E-value=0.002 Score=68.56 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhcCc---c---ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccc---c-----------
Q 024362 6 DVKKMIMDDLEMFLKRK---D---FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSA---L----------- 55 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~---~---~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~---~----------- 55 (268)
++.++|..=|...+... . .||+||||||..+..+...| .+.++.||... +
T Consensus 762 eEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL 841 (1164)
T PTZ00112 762 KEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL 841 (1164)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH
Confidence 34444544444444321 1 49999999999999998776 25566666422 0
Q ss_pred -------c-cChHHHHHHHHhcCC----CeeEEEeCCccchh
Q 024362 56 -------L-RGNMELRNLLIATEN----KSLLVVEDIDCSIE 85 (268)
Q Consensus 56 -------~-~~d~~L~~lf~~~p~----~~IiliEDID~~~~ 85 (268)
+ .....|..+|..++. .+||+|||||....
T Consensus 842 ~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 842 FNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT 883 (1164)
T ss_pred cCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc
Confidence 0 012345666766532 46999999998864
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.002 Score=60.91 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccC
Q 024362 9 KMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRG 58 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~ 58 (268)
+.++..+...+.... |||++|+|||+++.++|..+.. |++.+........
T Consensus 12 ~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~ 91 (329)
T PRK08058 12 PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIK 91 (329)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCC
Confidence 446667777776543 8999999999999999998742 4666655433344
Q ss_pred hHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 59 NMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 59 d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
=++++.+...++ .+-|++||++|....
T Consensus 92 id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~ 124 (329)
T PRK08058 92 KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA 124 (329)
T ss_pred HHHHHHHHHHHhhCCcccCceEEEeehHhhhCH
Confidence 567888776654 356999999988754
No 176
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0014 Score=68.43 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC-
Q 024362 11 IMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE- 70 (268)
Q Consensus 11 i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p- 70 (268)
.+.-+..++.++. .+|+||||||+++.+.|.+||+++|.++-.+. ..++..|...|.++.
T Consensus 409 ~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~ 488 (953)
T KOG0736|consen 409 KVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARR 488 (953)
T ss_pred HHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhh
Confidence 3346667777752 47999999999999999999999999986552 457788999998875
Q ss_pred -CCeeEEEeCCccchh
Q 024362 71 -NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 -~~~IiliEDID~~~~ 85 (268)
++|||+|-+.|-.+.
T Consensus 489 ~~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 489 CSPAVLFLRNLDVLGI 504 (953)
T ss_pred cCceEEEEeccceeee
Confidence 699999999999885
No 177
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.97 E-value=0.0043 Score=53.34 Aligned_cols=78 Identities=17% Similarity=0.108 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHH-HHHHHhc---------
Q 024362 6 DVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMEL-RNLLIAT--------- 69 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L-~~lf~~~--------- 69 (268)
..-+++++-++.+..... .||++||||+.+|.+|-+.- +-+++.+|.+. ++++.+ ..||...
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~--~~~~~~e~~LFG~~~~~~~~~~~ 83 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAA--LPEELLESELFGHEKGAFTGARS 83 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTT--S-HHHHHHHHHEBCSSSSTTTSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhh--hhcchhhhhhhcccccccccccc
Confidence 344567777777776654 79999999999999998865 35899999887 666666 4566532
Q ss_pred --------CCCeeEEEeCCccchh
Q 024362 70 --------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 --------p~~~IiliEDID~~~~ 85 (268)
...-.++|||||....
T Consensus 84 ~~~G~l~~A~~GtL~Ld~I~~L~~ 107 (168)
T PF00158_consen 84 DKKGLLEQANGGTLFLDEIEDLPP 107 (168)
T ss_dssp EBEHHHHHTTTSEEEEETGGGS-H
T ss_pred ccCCceeeccceEEeecchhhhHH
Confidence 1466899999999865
No 178
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.94 E-value=0.0035 Score=56.48 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcC--c-----cccccCCCCHHHHHHHHHhh--c--CCc-EEEEeccccccChHHHHHHHHh---------
Q 024362 10 MIMDDLEMFLKR--K-----DFHRRVGRGKSSLIAGMANF--L--NFD-VYDLELSALLRGNMELRNLLIA--------- 68 (268)
Q Consensus 10 ~i~~Di~~Fl~~--~-----~~Y~~~GTGKTSl~~AlA~~--l--~~~-iy~l~ls~~~~~d~~L~~lf~~--------- 68 (268)
.-++.|..+|.. . ..||.+|+|||+||..++.. . .++ ++-++++.......-+..++..
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 82 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSIS 82 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSS
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 345566666665 2 27999999999999999977 2 233 3445555421111112222222
Q ss_pred ---------------c-CCCeeEEEeCCccchh
Q 024362 69 ---------------T-ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ---------------~-p~~~IiliEDID~~~~ 85 (268)
+ ..+|+||||||+....
T Consensus 83 ~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~ 115 (287)
T PF00931_consen 83 DPKDIEELQDQLRELLKDKRCLLVLDDVWDEED 115 (287)
T ss_dssp CCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHH
T ss_pred cccccccccccchhhhccccceeeeeeeccccc
Confidence 1 3499999999998764
No 179
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.92 E-value=0.00071 Score=60.99 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=35.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc---------------ccChHHHHHHHHhcC----CCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL---------------LRGNMELRNLLIATE----NKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~---------------~~~d~~L~~lf~~~p----~~~IiliEDID~~~ 84 (268)
+||++||||||++..+|+.. -+...+.+.. ....+.+.+.+..++ ..-+||||.|+.+.
T Consensus 17 iyG~~G~GKtt~a~~~~~~~--~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 17 IYGKPGTGKTSTIKYLPGKT--LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQ 94 (220)
T ss_pred EECCCCCCHHHHHHhcCCCC--EEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHH
Confidence 79999999999999998631 1111111110 112234444444332 35689999999865
Q ss_pred h
Q 024362 85 E 85 (268)
Q Consensus 85 ~ 85 (268)
.
T Consensus 95 ~ 95 (220)
T TIGR01618 95 N 95 (220)
T ss_pred H
Confidence 4
No 180
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.83 E-value=0.0019 Score=55.36 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCc--c---ccccCCCCHHHHHHHHHhhcC
Q 024362 8 KKMIMDDLEMFLKRK--D---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~--~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++-++.|..++... . -|||+|+|||||+..+...+.
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 345567788888763 2 689999999999999999883
No 181
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.82 E-value=0.0036 Score=50.43 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.||++|||||+|+.++|+.+ +-.+..++...
T Consensus 4 i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 58999999999999999987 56777776543
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.79 E-value=0.0055 Score=53.62 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhc---CCcEEEEecccccc---------ChHHHHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLR---------GNMELRNLL 66 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~---------~d~~L~~lf 66 (268)
|+++|++.+. .++.+.. ..|++|||||+++.+++..+ |+.|+.+..+.... .-..+..++
T Consensus 2 L~~~Q~~a~~----~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l 77 (196)
T PF13604_consen 2 LNEEQREAVR----AILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFL 77 (196)
T ss_dssp S-HHHHHHHH----HHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHT
T ss_pred CCHHHHHHHH----HHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHH
Confidence 6777777663 3455543 56999999999999987666 78888888776211 112233333
Q ss_pred Hh-----------cCCCeeEEEeCCccch
Q 024362 67 IA-----------TENKSLLVVEDIDCSI 84 (268)
Q Consensus 67 ~~-----------~p~~~IiliEDID~~~ 84 (268)
.. .++..+|+|||.--+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~vliVDEasmv~ 106 (196)
T PF13604_consen 78 YRIPNGDDEGRPELPKKDVLIVDEASMVD 106 (196)
T ss_dssp TEECCEECCSSCC-TSTSEEEESSGGG-B
T ss_pred hcCCcccccccccCCcccEEEEecccccC
Confidence 32 2345799999965544
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.75 E-value=0.002 Score=52.79 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC---cEEEEeccccccChHHHHHHHHhcCCCeeEEEeCC
Q 024362 7 VKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF---DVYDLELSALLRGNMELRNLLIATENKSLLVVEDI 80 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~---~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDI 80 (268)
.-+++.+.++.+..... .+|++||||++++.+|...-+. +++.++... .+ .+++..+ ....++|+||
T Consensus 6 ~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~--~~----~~~l~~a-~~gtL~l~~i 78 (138)
T PF14532_consen 6 AMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS--LP----AELLEQA-KGGTLYLKNI 78 (138)
T ss_dssp HHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC--TC----HHHHHHC-TTSEEEEECG
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh--Cc----HHHHHHc-CCCEEEECCh
Confidence 45677888888887765 7999999999999999998765 333333332 23 4466666 6667889999
Q ss_pred ccchh
Q 024362 81 DCSIE 85 (268)
Q Consensus 81 D~~~~ 85 (268)
|....
T Consensus 79 ~~L~~ 83 (138)
T PF14532_consen 79 DRLSP 83 (138)
T ss_dssp CCS-H
T ss_pred HHCCH
Confidence 99865
No 184
>PRK08118 topology modulation protein; Reviewed
Probab=96.70 E-value=0.0028 Score=54.14 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=37.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccc-----cccChHHHHHHHHhc-CCCeeEEEeC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSA-----LLRGNMELRNLLIAT-ENKSLLVVED 79 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~-----~~~~d~~L~~lf~~~-p~~~IiliED 79 (268)
-.|++|+|||||+..||..++++++.++--- ...+++.+..++..+ ..++ .+||-
T Consensus 6 I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~-wVidG 66 (167)
T PRK08118 6 LIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDE-WIIDG 66 (167)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCC-EEEeC
Confidence 3689999999999999999999999887221 124455555555543 3344 34444
No 185
>PRK10646 ADP-binding protein; Provisional
Probab=96.68 E-value=0.013 Score=50.12 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 4 DFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+++.-+.+-..|-.++.+.. ..|+-|+|||+|+++||..||.
T Consensus 10 s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 10 DEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 55666778888888888865 7899999999999999999986
No 186
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.67 E-value=0.0022 Score=64.19 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+++++.+..-+-... .+|+||||||+||.+||..++.
T Consensus 26 e~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 26 SHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 334444444443332 7899999999999999998754
No 187
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.66 E-value=0.0038 Score=62.88 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.5
Q ss_pred ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~ 54 (268)
+||++|||||++|++++.+. +.+++.++.+.
T Consensus 91 i~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 91 IYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred EECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 89999999999999997642 35788888764
No 188
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.66 E-value=0.0014 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.+|++|||||+++.+||..+|+.++..+
T Consensus 9 l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 9 LIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 5799999999999999999999988765
No 189
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.65 E-value=0.0019 Score=63.54 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=37.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc------c-ChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL------R-GNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~------~-~d~~L~~lf~~~ 69 (268)
+|||||||||+++.+||..++.+++.++.+... . .+..++.+|...
T Consensus 52 LiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 52 MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 789999999999999999999999999976421 1 235667777765
No 190
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.61 E-value=0.0033 Score=63.34 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 4 DFDVKKMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
....-++|-.+|+..+.+.. .+||+|||||+++.+||.++|++|....
T Consensus 24 hkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 33334445555554433332 6899999999999999999999998864
No 191
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.0091 Score=57.24 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCC
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++..+...+.... ++|++|+|||+|+.++|..+..
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44566666666553 5899999999999999999865
No 192
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.57 E-value=0.0038 Score=53.75 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=26.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
..|++|+|||+++..+|..++.+++.+....
T Consensus 6 i~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 6 VTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 3589999999999999999998888877655
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.53 E-value=0.02 Score=48.62 Aligned_cols=76 Identities=20% Similarity=0.272 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhc-----------------------CCcEEEEecccc--ccC
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFL-----------------------NFDVYDLELSAL--LRG 58 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l-----------------------~~~iy~l~ls~~--~~~ 58 (268)
++++-+...+.... +||+.|+||++++.++|..+ .-|++.++-... ...
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~ 83 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK 83 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhh
Confidence 34455555555543 79999999999999999876 236777776653 456
Q ss_pred hHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 59 NMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 59 d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
-++++.+...+. ..-|++||++|.+..
T Consensus 84 i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~ 116 (162)
T PF13177_consen 84 IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE 116 (162)
T ss_dssp HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH
Confidence 688888888763 356999999998754
No 194
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.51 E-value=0.012 Score=55.81 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHH-HHHh----------
Q 024362 6 DVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRN-LLIA---------- 68 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~-lf~~---------- 68 (268)
..-+.++..+..+..... .+|++||||+.++.+|-..- +-+++.+|.+. ++++.+.. ||..
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~--~~~~~l~~~lfG~~~g~~~ga~~ 83 (329)
T TIGR02974 6 NAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAA--LSENLLDSELFGHEAGAFTGAQK 83 (329)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCC--CChHHHHHHHhccccccccCccc
Confidence 345667788888876654 78999999999999986544 46899998876 55665543 4321
Q ss_pred -------cCCCeeEEEeCCccchh
Q 024362 69 -------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 -------~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 84 ~~~G~~~~a~gGtL~Ldei~~L~~ 107 (329)
T TIGR02974 84 RHQGRFERADGGTLFLDELATASL 107 (329)
T ss_pred ccCCchhhCCCCEEEeCChHhCCH
Confidence 22467899999998754
No 195
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.49 E-value=0.004 Score=53.28 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l 43 (268)
|++.|++.| ..+++... ..||||||||+++.+++..+
T Consensus 2 ln~~Q~~Ai----~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 2 LNESQREAI----QSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp --HHHHHHH----HHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHH----HHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 567777766 56666654 46999999998777777666
No 196
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.45 E-value=0.0046 Score=63.37 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.2
Q ss_pred ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~ 54 (268)
+||++|||||+|+.++++.. +.+++.++.+.
T Consensus 180 L~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 180 LYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred EECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 79999999999999998776 34577777554
No 197
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.012 Score=56.79 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC
Q 024362 10 MIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.++.-+...+.... |||++|+||++|+.++|..+.
T Consensus 26 ~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 26 AAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445555555542 799999999999999999884
No 198
>PRK13947 shikimate kinase; Provisional
Probab=96.42 E-value=0.0024 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=26.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.-|.+|||||+++..||..||+++|..+.
T Consensus 6 l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 6 LIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 35899999999999999999999998774
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.42 E-value=0.011 Score=59.11 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHH-HHHh-----------
Q 024362 7 VKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRN-LLIA----------- 68 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~-lf~~----------- 68 (268)
.-+++++.++.+..... .+|++|||||+++.+|.... +-+++.+|.+. ++++.+.. ||..
T Consensus 204 ~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~--~~~~~~~~~lfg~~~~~~~~~~~~ 281 (534)
T TIGR01817 204 AMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA--LSETLLESELFGHEKGAFTGAIAQ 281 (534)
T ss_pred HHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC--CCHHHHHHHHcCCCCCccCCCCcC
Confidence 34556667777665543 68999999999999998774 56899999876 56665543 3321
Q ss_pred ------cCCCeeEEEeCCccchh
Q 024362 69 ------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ------~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 282 ~~g~~~~a~~GtL~ldei~~L~~ 304 (534)
T TIGR01817 282 RKGRFELADGGTLFLDEIGEISP 304 (534)
T ss_pred CCCcccccCCCeEEEechhhCCH
Confidence 12356899999998754
No 200
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.42 E-value=0.0033 Score=61.99 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc------cC-hHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL------RG-NMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~------~~-d~~L~~lf~~~ 69 (268)
++||+|||||+|+.+||..++.+++.++.+... .+ ++.++.||..+
T Consensus 55 liGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 55 MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred EECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 789999999999999999999999999976532 12 36667777765
No 201
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.40 E-value=0.0045 Score=61.08 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh----cCCcEEEEeccccccChHHHHHHHHhcCCCeeE
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF----LNFDVYDLELSALLRGNMELRNLLIATENKSLL 75 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~----l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~Ii 75 (268)
++..+|-..+..+-.|+.+.. ..||+|||||+|+.+|+.+ .| ...+.+. +=.+.-...+..+....+|
T Consensus 190 ~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~--Lf~~L~~~~lg~v~~~DlL 264 (449)
T TIGR02688 190 FEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAK--LFYNISTRQIGLVGRWDVV 264 (449)
T ss_pred CChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHH--HHHHHHHHHHhhhccCCEE
Confidence 455666677777878888775 8999999999999998776 23 1111111 1011112455556678899
Q ss_pred EEeCCccch
Q 024362 76 VVEDIDCSI 84 (268)
Q Consensus 76 liEDID~~~ 84 (268)
+||||.-.-
T Consensus 265 I~DEvgylp 273 (449)
T TIGR02688 265 AFDEVATLK 273 (449)
T ss_pred EEEcCCCCc
Confidence 999998843
No 202
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.0088 Score=55.35 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=41.4
Q ss_pred ccccCCCCHHHHHHHHHhhc----C-CcEEEEecccc---------------------ccChHHHHHHHHhcCCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL----N-FDVYDLELSAL---------------------LRGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~-~~iy~l~ls~~---------------------~~~d~~L~~lf~~~p~~~Iili 77 (268)
+.|+.|+|||+++..||.++ | ..|..++.... ..+...|..++..+....+|||
T Consensus 199 ~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~d~vli 278 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDKDLILI 278 (282)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCCCEEEE
Confidence 56889999999999999987 4 78888877541 1234566777777766677776
Q ss_pred eC
Q 024362 78 ED 79 (268)
Q Consensus 78 ED 79 (268)
|.
T Consensus 279 Dt 280 (282)
T TIGR03499 279 DT 280 (282)
T ss_pred eC
Confidence 64
No 203
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.37 E-value=0.0035 Score=60.87 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=34.1
Q ss_pred ccccCCCCHHHHHHHHHhhcC--CcEEEEeccccccCh----HHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--FDVYDLELSALLRGN----MELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--~~iy~l~ls~~~~~d----~~L~~lf~~~ 69 (268)
+-||||||||.|+.|||.+|| .||+.++.|+-...+ +.|.+.|++.
T Consensus 55 iaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa~Rra 106 (398)
T PF06068_consen 55 IAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQAFRRA 106 (398)
T ss_dssp EEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHHHHCS
T ss_pred EeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHHHHHh
Confidence 569999999999999999998 789999988843333 4467777653
No 204
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.36 E-value=0.0029 Score=51.72 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=26.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.+|++|+|||+++.+||..+|+.++..+.
T Consensus 4 l~G~~GsGKstla~~la~~l~~~~~~~d~ 32 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKALGLPFVDLDE 32 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 46899999999999999999999988763
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.0052 Score=59.52 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.3
Q ss_pred ccccCCCCHHHHHHHHHhhc----C-CcEEEEecccc---------------------ccChHHHHHHHHhcCCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL----N-FDVYDLELSAL---------------------LRGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~-~~iy~l~ls~~---------------------~~~d~~L~~lf~~~p~~~Iili 77 (268)
+.||+|+|||+++..||..+ | ..|..+..... ..+..++...+..+....+|||
T Consensus 142 lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLI 221 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLI 221 (374)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEE
Confidence 67999999999999999864 4 35666654331 1344567777788888888886
Q ss_pred eCCc
Q 024362 78 EDID 81 (268)
Q Consensus 78 EDID 81 (268)
|...
T Consensus 222 DTaG 225 (374)
T PRK14722 222 DTIG 225 (374)
T ss_pred cCCC
Confidence 6644
No 206
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.32 E-value=0.0066 Score=50.73 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcE
Q 024362 4 DFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
+++.-+.+-..|-..+.+.. ..|+.|+|||+|++++|..+|+.-
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~ 50 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQG 50 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCC
Confidence 45556677788888887764 689999999999999999998753
No 207
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.27 E-value=0.0032 Score=50.83 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|||||+++..||..+|+++|..+
T Consensus 4 i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 3589999999999999999999998877
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.26 E-value=0.0032 Score=52.66 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=34.9
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHH--HHh---------cC-CCeeEEEeCCccchh
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNL--LIA---------TE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~l--f~~---------~p-~~~IiliEDID~~~~ 85 (268)
.+.||+|||+++.++|..+|+++-.|..+. .+..+++.-. +.. -| -..|+|+|||..+-.
T Consensus 5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tp-dllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp 76 (131)
T PF07726_consen 5 EGVPGVGKTTLAKALARSLGLSFKRIQFTP-DLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP 76 (131)
T ss_dssp ES---HHHHHHHHHHHHHTT--EEEEE--T-T--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H
T ss_pred ECCCccHHHHHHHHHHHHcCCceeEEEecC-CCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH
Confidence 578999999999999999999999998764 3333333211 110 01 155999999988765
No 209
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.26 E-value=0.022 Score=48.58 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 4 DFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++....+-..+-..+.+.. ..|+-|+|||||+++||..||
T Consensus 7 ~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 7 DEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 56666777788888887765 679999999999999999998
No 210
>PRK03839 putative kinase; Provisional
Probab=96.26 E-value=0.0032 Score=53.52 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.||+||||++..||..++++++.++
T Consensus 5 l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 5 ITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3589999999999999999999987654
No 211
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.011 Score=56.21 Aligned_cols=195 Identities=15% Similarity=0.071 Sum_probs=97.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccc--cccChHHHHHHHHhcC------C
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSA--LLRGNMELRNLLIATE------N 71 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~--~~~~d~~L~~lf~~~p------~ 71 (268)
|+|++|+|||+++.++|..+.. |++.+.... ....=++++.+...+. .
T Consensus 27 f~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~ 106 (328)
T PRK05707 27 LHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGG 106 (328)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCC
Confidence 7999999999999999999965 667775432 1234467777766542 3
Q ss_pred CeeEEEeCCccchhhh-hhhhhhcCCCCceee--eeecccCCCCccccccccccccccCCCchhhHHHHHHhhhcCCCCh
Q 024362 72 KSLLVVEDIDCSIELQ-NRHAQALAVNPMVSN--MNYTARPGINQGPQVGSKCWAPTTLESEHPFSLEIEELTEKVMVTP 148 (268)
Q Consensus 72 ~~IiliEDID~~~~~~-~R~~~~~~~~~~~vT--LN~kiRPGRvD~~I~~f~~~a~~y~~~~~~lf~~i~~~~~~~~~tp 148 (268)
+-|++||++|...... +.--+.-++....++ |=. -.|.++--.|...++...+......+...-+.... ...++
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t-~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~--~~~~~ 183 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS-HQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL--PESDE 183 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE-CChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc--ccCCh
Confidence 5688999999875411 000000011111222 100 11222322331222111111112222222222211 12344
Q ss_pred HHHHHHh-hcCCCHHHHHhhhHH-Hhhhhh-hHHHHHHhccccCCChHHHhhhhcCCCCHHHHHHHHHHHHHHHHHhc
Q 024362 149 ADVAERL-MRSEVPEVALRDLID-FLKNKK-REQEVEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFLKIKKREQ 223 (268)
Q Consensus 149 Aei~~~l-~~~~d~~~al~~~~~-~Lk~h~-l~~eIe~li~e~~~SPAEVqg~Ll~k~dp~~Al~~l~~wl~~~~~~k 223 (268)
.+....+ +.+++|..|+.-... ++..+. ....+..+.. ...++-++.+.+. +.+....+.-+..|+.....-+
T Consensus 184 ~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~-~~~~~~~~~~~~~-k~~~~~~l~~l~~~~~D~l~~~ 259 (328)
T PRK05707 184 RERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLK-QQQSASQLAESWL-KVPLLLLFDWFCDWAHDILRYQ 259 (328)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhc-CcccHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 4443333 235677777643321 222222 2234444443 3346667777664 4567778888888888765533
No 212
>PRK06217 hypothetical protein; Validated
Probab=96.21 E-value=0.0039 Score=53.50 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|+||||++.+||..+|++++.++
T Consensus 6 i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 6 ITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3588999999999999999999988775
No 213
>PF05729 NACHT: NACHT domain
Probab=96.18 E-value=0.0073 Score=49.16 Aligned_cols=61 Identities=26% Similarity=0.400 Sum_probs=38.4
Q ss_pred cccCCCCHHHHHHHHHhhcCCc---------EEEEeccccccCh--HHHHHHHH------------------hcCCCeeE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD---------VYDLELSALLRGN--MELRNLLI------------------ATENKSLL 75 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~---------iy~l~ls~~~~~d--~~L~~lf~------------------~~p~~~Ii 75 (268)
+|++|+|||+++..+|..+... ++.+++....... ..|..++. ..+.+++|
T Consensus 6 ~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 85 (166)
T PF05729_consen 6 SGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKRVLL 85 (166)
T ss_pred ECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCceEE
Confidence 6899999999999999777222 2233333311111 12333222 23568899
Q ss_pred EEeCCccchh
Q 024362 76 VVEDIDCSIE 85 (268)
Q Consensus 76 liEDID~~~~ 85 (268)
+||.+|.+..
T Consensus 86 ilDglDE~~~ 95 (166)
T PF05729_consen 86 ILDGLDELEE 95 (166)
T ss_pred EEechHhccc
Confidence 9999999875
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.16 E-value=0.014 Score=50.55 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~ 54 (268)
.||++|||||+|+..+|.. .|..++.++...
T Consensus 17 i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 17 IYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 7999999999999988854 367888888864
No 215
>PRK00625 shikimate kinase; Provisional
Probab=96.16 E-value=0.0039 Score=53.87 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=25.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|.||+|||+++..||..++++++.+|
T Consensus 6 iG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 6 CGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 478999999999999999999999887
No 216
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.15 E-value=0.017 Score=49.85 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=26.8
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
.|++|+|||+|+..+|...+-+++++....
T Consensus 5 ~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 5 TGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 589999999999999988888898888776
No 217
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.08 E-value=0.014 Score=51.42 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHhhcCc-------cccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 13 DDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 13 ~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
..|+..|..- ..||++|||||+|+..+|... +..++.++..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4566677532 279999999999999998744 7888888876
No 218
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0038 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
=|.||||||+|+..||..+|+..+.++
T Consensus 13 tGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 13 TGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred eCCCCCCchhHHHHHHHHhCCceEehh
Confidence 478999999999999999999988764
No 219
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.03 E-value=0.0073 Score=55.80 Aligned_cols=71 Identities=24% Similarity=0.390 Sum_probs=43.0
Q ss_pred HHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCc---EEEEeccccccChHHHHHHHHhc-------------CCCee
Q 024362 14 DLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFD---VYDLELSALLRGNMELRNLLIAT-------------ENKSL 74 (268)
Q Consensus 14 Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~---iy~l~ls~~~~~d~~L~~lf~~~-------------p~~~I 74 (268)
=++.++.... ..|++|||||+++...=..+.-+ +..++.|. ..+...++.++.+- .+++|
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~-~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA-QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T-THHHHHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC-CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 3455555554 78999999999997655444433 33455555 33444555554431 25889
Q ss_pred EEEeCCccchh
Q 024362 75 LVVEDIDCSIE 85 (268)
Q Consensus 75 iliEDID~~~~ 85 (268)
++||||.....
T Consensus 104 ~fiDDlN~p~~ 114 (272)
T PF12775_consen 104 LFIDDLNMPQP 114 (272)
T ss_dssp EEEETTT-S--
T ss_pred EEecccCCCCC
Confidence 99999988754
No 220
>PRK07261 topology modulation protein; Provisional
Probab=96.01 E-value=0.0053 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|++|+|||||+..||..++++++.++.
T Consensus 5 i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 35899999999999999999999887763
No 221
>PRK13949 shikimate kinase; Provisional
Probab=95.99 E-value=0.0049 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=26.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+|||+++..||..++++++.++
T Consensus 6 liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 6 LVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4689999999999999999999998877
No 222
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0041 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.5
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
|.|||||||+|..|+ .+|++++.++
T Consensus 7 GTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 7 GTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred CCCCCchHHHHHHHH-HhCCceeeHH
Confidence 789999999999999 9999987754
No 223
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.017 Score=54.72 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC-------------------------CcEEEEeccc---------cccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN-------------------------FDVYDLELSA---------LLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~-------------------------~~iy~l~ls~---------~~~~d~~L~~lf~~~ 69 (268)
|+|++|+|||+++.++|..+. -|++.++..+ ....=++++.+...+
T Consensus 26 f~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~ 105 (325)
T PRK08699 26 FAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREIIDNV 105 (325)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHHHHH
Confidence 899999999999999999974 4677776532 113446677776655
Q ss_pred C------CCeeEEEeCCccchh
Q 024362 70 E------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 p------~~~IiliEDID~~~~ 85 (268)
. .+-|++||++|..-.
T Consensus 106 ~~~p~~~~~kV~iiEp~~~Ld~ 127 (325)
T PRK08699 106 YLTSVRGGLRVILIHPAESMNL 127 (325)
T ss_pred hhCcccCCceEEEEechhhCCH
Confidence 2 366999999998754
No 224
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=95.96 E-value=0.0044 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 28 VGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 28 ~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
||+||||+...||..||++++++|-
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH
Confidence 6999999999999999999999874
No 225
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.92 E-value=0.0061 Score=51.56 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|+||+|||+++..||..+|+..+.+
T Consensus 4 i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 4 VLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 369999999999999999999765554
No 226
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0049 Score=60.86 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=45.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
.|+++|||||+++.++|+. +.....++.+.. +.+...++.+|.... .++|+++|++|+...
T Consensus 23 ~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~ 90 (494)
T COG0464 23 LHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAP 90 (494)
T ss_pred eeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhccc
Confidence 7999999999999999999 444433433321 234566778887764 369999999999876
No 227
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.91 E-value=0.0066 Score=51.01 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|.+|+||||++..||..+|+++|..+.
T Consensus 7 ~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 7 LVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 45889999999999999999999998764
No 228
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.86 E-value=0.033 Score=52.56 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHH-HHHh-----------
Q 024362 7 VKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRN-LLIA----------- 68 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~-lf~~----------- 68 (268)
.-+.+++.+........ .+|.+||||+.++.+|-..- +-+++.++.+. ++++.+.. +|..
T Consensus 14 ~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~--~~~~~~~~~lfg~~~~~~~g~~~~ 91 (326)
T PRK11608 14 SFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA--LNENLLDSELFGHEAGAFTGAQKR 91 (326)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC--CCHHHHHHHHccccccccCCcccc
Confidence 44567777888876654 68999999999999996544 35889888876 55655543 3321
Q ss_pred ------cCCCeeEEEeCCccchh
Q 024362 69 ------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ------~p~~~IiliEDID~~~~ 85 (268)
......++|+|||..-.
T Consensus 92 ~~g~l~~a~gGtL~l~~i~~L~~ 114 (326)
T PRK11608 92 HPGRFERADGGTLFLDELATAPM 114 (326)
T ss_pred cCCchhccCCCeEEeCChhhCCH
Confidence 12356789999999764
No 229
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.84 E-value=0.012 Score=55.00 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhhcCcc---------ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD---------FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~---------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
|+++.++.+..=++.++.-.. .-|.+|||||+++..||..||+++|.++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 577777777777777665421 3589999999999999999999999765
No 230
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.84 E-value=0.026 Score=58.24 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHH-HHHH-----------
Q 024362 6 DVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELR-NLLI----------- 67 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~-~lf~----------- 67 (268)
...+.+++.++.+..... .+|++|||||.++.+|.... +.+++.++... +++..+. .+|.
T Consensus 383 ~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~--~~~~~~~~~lfg~~~~~~~g~~~ 460 (686)
T PRK15429 383 EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA--MPAGLLESDLFGHERGAFTGASA 460 (686)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc--CChhHhhhhhcCccccccccccc
Confidence 345667777777766553 78999999999999997654 56888888765 4443332 2222
Q ss_pred ------hcCCCeeEEEeCCccchh
Q 024362 68 ------ATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 ------~~p~~~IiliEDID~~~~ 85 (268)
.......++|||||..-.
T Consensus 461 ~~~g~le~a~~GtL~Ldei~~L~~ 484 (686)
T PRK15429 461 QRIGRFELADKSSLFLDEVGDMPL 484 (686)
T ss_pred chhhHHHhcCCCeEEEechhhCCH
Confidence 123467899999998754
No 231
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.83 E-value=0.0049 Score=49.68 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=19.0
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.|+||+||||++..++..++
T Consensus 5 ~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EESTTSSHHHHHHHHHHHST
T ss_pred ECCCCCCHHHHHHHHHHHCC
Confidence 58999999999999999999
No 232
>PLN02199 shikimate kinase
Probab=95.81 E-value=0.015 Score=54.87 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhhcCcc--ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 4 DFDVKKMIMDDLEMFLKRKD--FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
|+..-+..-..|..|+.+.. .-|.+|+|||++...||..+|+++++.+.
T Consensus 85 de~~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 85 DEDILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 55555556678888998876 56999999999999999999999998873
No 233
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=95.78 E-value=0.0052 Score=58.58 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcCC----c--EEEEecccc-cc-ChHHHHHHHHhcC-----
Q 024362 9 KMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLNF----D--VYDLELSAL-LR-GNMELRNLLIATE----- 70 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~~----~--iy~l~ls~~-~~-~d~~L~~lf~~~p----- 70 (268)
++++.-+.+|.+... ||+||||||||.+.|.|..|-- . +..+++|+. +. ....=..+|+.+.
T Consensus 47 ~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~f 126 (360)
T KOG0990|consen 47 EPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTY 126 (360)
T ss_pred CchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceec
Confidence 456677788866543 8999999999999999997633 2 233444441 11 1122345555554
Q ss_pred ----CCeeEEEeCCccchh
Q 024362 71 ----NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 ----~~~IiliEDID~~~~ 85 (268)
..-.|+|||-|+...
T Consensus 127 st~~~fKlvILDEADaMT~ 145 (360)
T KOG0990|consen 127 STHAAFKLVILDEADAMTR 145 (360)
T ss_pred cccCceeEEEecchhHhhH
Confidence 445899999999764
No 234
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.78 E-value=0.0077 Score=54.63 Aligned_cols=29 Identities=31% Similarity=0.618 Sum_probs=23.1
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
|++|+||||+|.++..++ |.+++.+||--
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 799999999999999987 67899999865
No 235
>PRK14532 adenylate kinase; Provisional
Probab=95.77 E-value=0.0075 Score=51.53 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|+||+|||+++..||..+|+..+..
T Consensus 5 ~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 479999999999999999999877665
No 236
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.76 E-value=0.0081 Score=50.06 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.5
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.|++|+||||++.+||+.+++.++.
T Consensus 4 ~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 4 MGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred ECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4899999999999999999865543
No 237
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.74 E-value=0.0081 Score=51.42 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|++|+|||+++..||+.++++++..+-
T Consensus 9 liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred EECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 46899999999999999999999988763
No 238
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.70 E-value=0.0084 Score=50.93 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=23.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|+||+|||+++..||..+|+.++.+
T Consensus 4 i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 4 LLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 478999999999999999998776554
No 239
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.69 E-value=0.019 Score=49.94 Aligned_cols=52 Identities=10% Similarity=0.326 Sum_probs=33.8
Q ss_pred ccCCCCHHHHHHHHHhhcC-CcE-EEEeccccccChHHH-HHHHHhc--CCCeeEEEeC
Q 024362 26 RRVGRGKSSLIAGMANFLN-FDV-YDLELSALLRGNMEL-RNLLIAT--ENKSLLVVED 79 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~-~~i-y~l~ls~~~~~d~~L-~~lf~~~--p~~~IiliED 79 (268)
+.+|||||+++.||++.|| |-- -.=+.+.+ ....+ ...+..+ ....+|+.|=
T Consensus 6 AtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k--~~~~f~~~~l~~L~~~~~~vViaDR 62 (168)
T PF08303_consen 6 ATIGCGKTTVALALSNLFGEWGHVQNDNITGK--RKPKFIKAVLELLAKDTHPVVIADR 62 (168)
T ss_pred cCCCcCHHHHHHHHHHHcCCCCccccCCCCCC--CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4689999999999999999 643 22223321 33444 3456667 6666777664
No 240
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.67 E-value=0.029 Score=57.83 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
|++.++..|. .++.+.. ++||||||||+++.++...+ |..|..+..+.
T Consensus 158 ln~~Q~~Av~----~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn 211 (637)
T TIGR00376 158 LNESQKEAVS----FALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSN 211 (637)
T ss_pred CCHHHHHHHH----HHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcH
Confidence 6777777663 3555533 78999999999999888775 77888877655
No 241
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.64 E-value=0.0072 Score=58.59 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.2
Q ss_pred ccccCCCCHHHHHHHHHhhcC--CcEEEEeccccccCh----HHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--FDVYDLELSALLRGN----MELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--~~iy~l~ls~~~~~d----~~L~~lf~~~ 69 (268)
+-||||||||.|+.+||.+|| .+|+.++.|+....+ +.|.+.|++.
T Consensus 70 i~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~Rra 121 (450)
T COG1224 70 IVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRRA 121 (450)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHHh
Confidence 679999999999999999997 567777777632222 4566666653
No 242
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0086 Score=52.18 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.5
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
-|+|||||||++.-||.++||.+|.
T Consensus 6 sG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 6 SGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred ccCCCCChhHHHHHHHHHhCCceee
Confidence 4899999999999999999999887
No 243
>PRK06547 hypothetical protein; Provisional
Probab=95.60 E-value=0.015 Score=50.11 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.+|++|+|||+++..||..+++.++.++
T Consensus 20 i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 5699999999999999999887766544
No 244
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.59 E-value=0.017 Score=48.01 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCcc--------ccccCCCCHHHHHHHHHhhc
Q 024362 7 VKKMIMDDLEMFLKRKD--------FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~--------~Y~~~GTGKTSl~~AlA~~l 43 (268)
.++.|++=|..|+.+.. |+|++|||||.++.-||..+
T Consensus 33 a~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 33 AVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46778899999997642 99999999999999999985
No 245
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.58 E-value=0.039 Score=56.37 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHH-HHHHHhc-----------
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMEL-RNLLIAT----------- 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L-~~lf~~~----------- 69 (268)
-.+++..++.+..... .+|++||||+.++.+|..... -+++.+|-.. +.++.+ ..||...
T Consensus 334 ~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~--~~~~~~~~elfg~~~~~~~~~~~g~ 411 (638)
T PRK11388 334 MRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQL--YPDEALAEEFLGSDRTDSENGRLSK 411 (638)
T ss_pred HHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCC--CChHHHHHHhcCCCCcCccCCCCCc
Confidence 4556677777776654 689999999999999987653 5899998776 555544 4566532
Q ss_pred ---CCCeeEEEeCCccchh
Q 024362 70 ---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 ---p~~~IiliEDID~~~~ 85 (268)
.....++|||||..-.
T Consensus 412 ~~~a~~GtL~ldei~~l~~ 430 (638)
T PRK11388 412 FELAHGGTLFLEKVEYLSP 430 (638)
T ss_pred eeECCCCEEEEcChhhCCH
Confidence 2456899999998754
No 246
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.56 E-value=0.015 Score=42.43 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=22.3
Q ss_pred ccCCCCHHHHHHHHHhhc-CCcEEEEec
Q 024362 26 RRVGRGKSSLIAGMANFL-NFDVYDLEL 52 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l-~~~iy~l~l 52 (268)
|++|+|||+++.+|+..| +.+++.++-
T Consensus 6 G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 6 GGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 789999999999999997 466666543
No 247
>PRK13946 shikimate kinase; Provisional
Probab=95.54 E-value=0.009 Score=51.42 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=26.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.-|.+|+|||+++..||..||+++|..+.
T Consensus 15 l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 15 LVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 45899999999999999999999998874
No 248
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.54 E-value=0.008 Score=52.43 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
+-|.+|+||||+-++||..|++++++.|
T Consensus 7 LiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 7 LIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred EEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 3478999999999999999999999987
No 249
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.53 E-value=0.011 Score=49.87 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=23.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+..+..
T Consensus 8 i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 468999999999999999998876654
No 250
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.50 E-value=0.013 Score=48.91 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcC---c--c---ccccCCCCHHHHHHHHHhhcCCc---EEEEeccc
Q 024362 8 KKMIMDDLEMFLKR---K--D---FHRRVGRGKSSLIAGMANFLNFD---VYDLELSA 54 (268)
Q Consensus 8 K~~i~~Di~~Fl~~---~--~---~Y~~~GTGKTSl~~AlA~~l~~~---iy~l~ls~ 54 (268)
+++.++.+..++.. . . .+|++|+|||+|+.+++..+.-. ++.++...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 35566777888831 1 1 58999999999999988887555 67766665
No 251
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.021 Score=60.84 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=45.4
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccc-----cc-------cChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSA-----LL-------RGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~-----~~-------~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
-||.|+|||=|++|||.++ .-.+..|++++ .. ..-+..-.|...+ ++.||||+||||-|-.
T Consensus 597 lGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 597 LGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred ECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 3899999999999999998 34688888886 11 2223444555555 4689999999998854
No 252
>PRK06762 hypothetical protein; Provisional
Probab=95.48 E-value=0.013 Score=48.91 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|+|||+++..|+..++..++.++
T Consensus 7 i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 7 IRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 3589999999999999999977777665
No 253
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.45 E-value=0.03 Score=54.47 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHH---hcC--CCeeEEEeCC
Q 024362 10 MIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLI---ATE--NKSLLVVEDI 80 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~---~~p--~~~IiliEDI 80 (268)
.++..+..++.... .||||+||||+|..-+...+.-.+..++..+...+...+.+.+. .+. .++.|+||||
T Consensus 24 ~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEI 103 (398)
T COG1373 24 KLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEI 103 (398)
T ss_pred hhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecc
Confidence 45555566665543 68999999999998888877554333333332455555433333 333 4589999999
Q ss_pred ccchh
Q 024362 81 DCSIE 85 (268)
Q Consensus 81 D~~~~ 85 (268)
.++-.
T Consensus 104 q~v~~ 108 (398)
T COG1373 104 QNVPD 108 (398)
T ss_pred cCchh
Confidence 99754
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.44 E-value=0.017 Score=65.11 Aligned_cols=58 Identities=21% Similarity=0.364 Sum_probs=45.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHh--------------------cCCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIA--------------------TENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~--------------------~p~~~IiliEDID~~ 83 (268)
.=|.||.|||||+.|||+..|-.+..||||+ + .+|-+||.+ +...--||||||.-+
T Consensus 1548 LEGsPGVGKTSlItaLAr~tG~kliRINLSe--Q--TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1548 LEGSPGVGKTSLITALARKTGKKLIRINLSE--Q--TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred ecCCCCccHHHHHHHHHHHhcCceEEeeccc--c--chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 4578999999999999999999999999998 2 345555543 344557888998765
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
..
T Consensus 1624 SQ 1625 (4600)
T COG5271 1624 SQ 1625 (4600)
T ss_pred HH
Confidence 43
No 255
>PF14516 AAA_35: AAA-like domain
Probab=95.42 E-value=0.02 Score=54.14 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
-++||.+|||||...++..+ |+.+..+|+..
T Consensus 36 I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~ 69 (331)
T PF14516_consen 36 IKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQ 69 (331)
T ss_pred EECcccCCHHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 46899999999999887666 88888888876
No 256
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.41 E-value=0.013 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.6
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.|++|+||||++..|+..++..++.
T Consensus 5 ~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 5 MGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 5899999999999999998865543
No 257
>PRK06696 uridine kinase; Validated
Probab=95.41 E-value=0.045 Score=48.48 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=29.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccCh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGN 59 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d 59 (268)
--|.+|+|||||+..||..| |..++.+++-+....+
T Consensus 27 I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~ 65 (223)
T PRK06696 27 IDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR 65 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence 46899999999999999999 7888888877644333
No 258
>PRK04182 cytidylate kinase; Provisional
Probab=95.38 E-value=0.012 Score=49.07 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.5
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.|.+|+|||+++.+||..+|++++..
T Consensus 6 ~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 6 SGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred ECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 47899999999999999999988773
No 259
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.37 E-value=0.056 Score=54.78 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh-----------cCCcEEEEeccccccChHHHHH-HHHh----
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF-----------LNFDVYDLELSALLRGNMELRN-LLIA---- 68 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~-----------l~~~iy~l~ls~~~~~d~~L~~-lf~~---- 68 (268)
-+.+..-+..|-.... .+|++||||+.++.+|-.. -+-+++.+|.+. +.++.+.. ||..
T Consensus 228 m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaa--l~e~lleseLFG~~~ga 305 (538)
T PRK15424 228 MEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA--IAESLLEAELFGYEEGA 305 (538)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeeccc--CChhhHHHHhcCCcccc
Confidence 3456666777666553 6899999999999999776 466899999876 55655543 3331
Q ss_pred --------------cCCCeeEEEeCCccchh
Q 024362 69 --------------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 --------------~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 306 ftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~ 336 (538)
T PRK15424 306 FTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 336 (538)
T ss_pred ccCccccccCCchhccCCCEEEEcChHhCCH
Confidence 12356799999998765
No 260
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.007 Score=55.36 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 9 KMIMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
++|+++++-.+++.+. .||.|+|||||+.+|+|+-+|.|-.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~ 60 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEec
Confidence 6899999999999874 5899999999999999998887654
No 261
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.32 E-value=0.061 Score=53.71 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHH-HHHHh-------------
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELR-NLLIA------------- 68 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~-~lf~~------------- 68 (268)
+.+++-++.+-.... .+|++|||||.++.+|.... +-+++.+|.+. +.++.+. .||..
T Consensus 197 ~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~--~~~~~~e~~lfG~~~g~~~ga~~~~~ 274 (509)
T PRK05022 197 QQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAA--LPESLAESELFGHVKGAFTGAISNRS 274 (509)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEccc--CChHHHHHHhcCccccccCCCcccCC
Confidence 445555555444433 68999999999999998764 46888888776 5554443 34431
Q ss_pred ----cCCCeeEEEeCCccchh
Q 024362 69 ----TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ----~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 275 g~~~~a~gGtL~ldeI~~L~~ 295 (509)
T PRK05022 275 GKFELADGGTLFLDEIGELPL 295 (509)
T ss_pred cchhhcCCCEEEecChhhCCH
Confidence 12345789999999765
No 262
>PRK02496 adk adenylate kinase; Provisional
Probab=95.31 E-value=0.013 Score=50.04 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|+||+|||+++..||..+|+..+.+
T Consensus 6 i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 469999999999999999999876654
No 263
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.30 E-value=0.014 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|++|+|||+++.+||..+|+++|..
T Consensus 5 i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 5 ISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EECCCCCCHHHHHHHHHHHcCCceecH
Confidence 468999999999999999999997764
No 264
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.26 E-value=0.051 Score=52.52 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccccChHHHHH-HHHh-------------
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALLRGNMELRN-LLIA------------- 68 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~~~d~~L~~-lf~~------------- 68 (268)
..++.++..+..... .+|++||||+.++.++... .+.+++.++... +.+..+.. ||..
T Consensus 153 ~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~--~~~~~~~~~lfg~~~~~~~~~~~~~~ 230 (457)
T PRK11361 153 MDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAA--LPESLLESELFGHEKGAFTGAQTLRQ 230 (457)
T ss_pred hHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCC--CCHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 345666666665543 6899999999999999665 356888888876 55555543 3331
Q ss_pred ----cCCCeeEEEeCCccchh
Q 024362 69 ----TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ----~p~~~IiliEDID~~~~ 85 (268)
.....+|+|||||..-.
T Consensus 231 g~~~~a~~gtl~ld~i~~l~~ 251 (457)
T PRK11361 231 GLFERANEGTLLLDEIGEMPL 251 (457)
T ss_pred CceEECCCCEEEEechhhCCH
Confidence 12356899999999765
No 265
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.26 E-value=0.012 Score=48.56 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.0
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
.|+||+|||++|..||..+|+..+
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~~~i 25 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGLVHI 25 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTSEEE
T ss_pred cCCCCCChHHHHHHHHHhcCccee
Confidence 589999999999999999986533
No 266
>PF13245 AAA_19: Part of AAA domain
Probab=95.26 E-value=0.035 Score=41.75 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=21.6
Q ss_pred cccCCCCHH-HHHHHHHhhc------CCcEEEEeccc
Q 024362 25 HRRVGRGKS-SLIAGMANFL------NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKT-Sl~~AlA~~l------~~~iy~l~ls~ 54 (268)
-++|||||| +++.+++..+ +-.|..+..+.
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~ 52 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTR 52 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCH
Confidence 589999999 5555555555 56788877665
No 267
>PRK14531 adenylate kinase; Provisional
Probab=95.25 E-value=0.014 Score=50.01 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|+||+|||+++..||..+|+..+.+
T Consensus 7 i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 7 FLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 579999999999999999999876553
No 268
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.24 E-value=0.015 Score=49.28 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.1
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
|++||||||++.+||+.+|..++.-+
T Consensus 2 G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 78999999999999999987655443
No 269
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.034 Score=56.47 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=48.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc--ccCh----HHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL--LRGN----MELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~--~~~d----~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
+.|++|+|||+|++-||-.-+++++-+--.+. ++++ ..+...|..+ .+-+||++|||.....
T Consensus 543 l~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 543 LEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred EecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 56899999999999999999999887643331 3555 4578888887 3578999999987654
No 270
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.24 E-value=0.022 Score=58.40 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=26.0
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~l 52 (268)
+-||||+|||||+.+||..+ .+++|.+..
T Consensus 108 LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 108 LLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred EecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 56999999999999999988 679999865
No 271
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.24 E-value=0.015 Score=52.79 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.+||+|||||.++.++|..+|.+|+.+|-
T Consensus 6 i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 6 IVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred EECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 47999999999999999999999998874
No 272
>PRK13948 shikimate kinase; Provisional
Probab=95.23 E-value=0.016 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=25.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|.+|+||||+...||..+|+++++.|
T Consensus 16 iG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 16 AGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 478999999999999999999999877
No 273
>PRK14530 adenylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=50.86 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|+||+||||++..||..+|++.+..
T Consensus 8 i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 8 LLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 469999999999999999999877743
No 274
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.14 E-value=0.071 Score=57.64 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEecccc---------ccChHHHHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSAL---------LRGNMELRNLL 66 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~---------~~~d~~L~~lf 66 (268)
.|+++|++.| ...+.+.. +-|.+|||||+++.++... .|+.|..+-++.. +....++..++
T Consensus 346 ~Ls~eQr~Av----~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll 421 (988)
T PRK13889 346 VLSGEQADAL----AHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLE 421 (988)
T ss_pred CCCHHHHHHH----HHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHH
Confidence 3777888764 34455443 6799999999998876654 4888888876653 22335566665
Q ss_pred Hh-------cCCCeeEEEeCCccch
Q 024362 67 IA-------TENKSLLVVEDIDCSI 84 (268)
Q Consensus 67 ~~-------~p~~~IiliEDID~~~ 84 (268)
.. +....||||||.--+.
T Consensus 422 ~~~~~~~~~l~~~~vlIVDEASMv~ 446 (988)
T PRK13889 422 HGWGQGRDLLTSRDVLVIDEAGMVG 446 (988)
T ss_pred hhhcccccccccCcEEEEECcccCC
Confidence 43 3456799999966544
No 275
>PRK08233 hypothetical protein; Provisional
Probab=95.11 E-value=0.021 Score=47.85 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.4
Q ss_pred cccCCCCHHHHHHHHHhhcC-CcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLN-FDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~-~~iy~l~ 51 (268)
-|++|+|||||+..||..|+ ..++.++
T Consensus 9 ~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 9 AAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred ECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 47899999999999999996 4444444
No 276
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.08 E-value=0.013 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
..|.+|||||||+.+||.. |+.+.
T Consensus 4 i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 4 ITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4688999999999999999 77644
No 277
>PRK14528 adenylate kinase; Provisional
Probab=94.99 E-value=0.019 Score=49.74 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|+||+|||+++..||..+|+.++.+
T Consensus 6 i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 6 FMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 469999999999999999999877653
No 278
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.97 E-value=0.03 Score=46.19 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCc
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
+=+.|-..+.+.. .+|+-|+|||+|++++|..+|.+
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3345556666664 79999999999999999999875
No 279
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.90 E-value=0.099 Score=50.94 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHH-HHHh--------------
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRN-LLIA-------------- 68 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~-lf~~-------------- 68 (268)
.+...+........ ..|++|||||+++.+|.... +.+++.++.+. ++++.+.. ||..
T Consensus 149 ~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~--~~~~~~~~~lfg~~~g~~~~~~~~~~g 226 (469)
T PRK10923 149 DVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAA--IPKDLIESELFGHEKGAFTGANTIRQG 226 (469)
T ss_pred HHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCC--CCHHHHHHHhcCCCCCCCCCCCcCCCC
Confidence 34444444443332 67999999999999998876 46889999876 56665543 4332
Q ss_pred ---cCCCeeEEEeCCccchh
Q 024362 69 ---TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ---~p~~~IiliEDID~~~~ 85 (268)
......++||+||....
T Consensus 227 ~~~~a~~Gtl~l~~i~~l~~ 246 (469)
T PRK10923 227 RFEQADGGTLFLDEIGDMPL 246 (469)
T ss_pred CeeECCCCEEEEeccccCCH
Confidence 12345689999998654
No 280
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.89 E-value=0.099 Score=52.49 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHH-HHHHhc------------
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELR-NLLIAT------------ 69 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~-~lf~~~------------ 69 (268)
..++..++.+..... .+|.+||||+.|+.||-..- +-+++.+|.+. +.++.+. .||...
T Consensus 214 ~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~--~~~~~~e~elFG~~~~~~~~~~~~~~ 291 (520)
T PRK10820 214 RQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCAS--IPDDVVESELFGHAPGAYPNALEGKK 291 (520)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEecccc--CCHHHHHHHhcCCCCCCcCCcccCCC
Confidence 456677776655543 68999999999999985433 35788888776 5565554 445322
Q ss_pred -----CCCeeEEEeCCccchh
Q 024362 70 -----ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 -----p~~~IiliEDID~~~~ 85 (268)
.....|+|||||....
T Consensus 292 g~~e~a~~GtL~LdeI~~L~~ 312 (520)
T PRK10820 292 GFFEQANGGSVLLDEIGEMSP 312 (520)
T ss_pred ChhhhcCCCEEEEeChhhCCH
Confidence 2346789999998754
No 281
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.89 E-value=0.031 Score=54.84 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=35.9
Q ss_pred ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHHHHHHHhcC-----------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMELRNLLIATE-----------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L~~lf~~~p-----------~~~IiliEDID~~~~ 85 (268)
.||+.|.|||+|.+|++++.. -+.-++-+++ +.-...+...+. .--+++||||+...-
T Consensus 118 i~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 118 IYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS----EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH----HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 589999999999999999873 2222333322 111122222221 344999999999764
No 282
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.16 Score=49.54 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.7
Q ss_pred ccccCCCCHHHHHHHHHhhc-------CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL-------NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-------~~~iy~l~ls~ 54 (268)
++|+.|+||||.+.-||..+ |..|..++...
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 68999999999999999876 46777777655
No 283
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.89 E-value=0.045 Score=48.05 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=38.5
Q ss_pred ccccCCCCHHHHHHHHHhh-----cCCcEE-----------EEecc--cc---cc-----ChHHHHHHHHhcC--CCeeE
Q 024362 24 FHRRVGRGKSSLIAGMANF-----LNFDVY-----------DLELS--AL---LR-----GNMELRNLLIATE--NKSLL 75 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~-----l~~~iy-----------~l~ls--~~---~~-----~d~~L~~lf~~~p--~~~Ii 75 (268)
.-|+.|+|||+|.++|++. .|.++- .-.++ +. .+ .-..+..++..+. .+.++
T Consensus 30 ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~ll 109 (199)
T cd03283 30 ITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLF 109 (199)
T ss_pred EECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCCCeEE
Confidence 3589999999999999953 454431 01111 10 01 1145778888888 89999
Q ss_pred EEeCCcc
Q 024362 76 VVEDIDC 82 (268)
Q Consensus 76 liEDID~ 82 (268)
|+||.=+
T Consensus 110 llDEp~~ 116 (199)
T cd03283 110 LLDEIFK 116 (199)
T ss_pred EEecccC
Confidence 9999543
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.87 E-value=0.064 Score=44.43 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=38.6
Q ss_pred cccCCCCHHHHHHHHHhhcCC-----------cEEEEeccccccChHHHHHHHH---hcCCCeeEEEeCCccchhhhh
Q 024362 25 HRRVGRGKSSLIAGMANFLNF-----------DVYDLELSALLRGNMELRNLLI---ATENKSLLVVEDIDCSIELQN 88 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~-----------~iy~l~ls~~~~~d~~L~~lf~---~~p~~~IiliEDID~~~~~~~ 88 (268)
-|+.|+|||+|..+|+|.+.. .+..+. .++....+++.- -+.++.|+++||-.+..+...
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~----~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFE----QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEc----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 488899999999999998742 222222 133444443322 246788999999777665333
No 285
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.86 E-value=0.026 Score=47.13 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.1
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.|.+|+|||||+.+|+..+ +++++.++.
T Consensus 5 ~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 5 TGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5789999999999999999 777777653
No 286
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.86 E-value=0.083 Score=53.38 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccccChHHHHH-HHHh-----------
Q 024362 7 VKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALLRGNMELRN-LLIA----------- 68 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~~~d~~L~~-lf~~----------- 68 (268)
.-+.+..-++.|-.... .+|++||||+.++.+|-.. -+-+++.+|-.. +.++.+.. ||..
T Consensus 220 ~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~--l~e~lleseLFG~~~gaftga~~~ 297 (526)
T TIGR02329 220 PMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGA--IAESLLEAELFGYEEGAFTGARRG 297 (526)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEecccc--CChhHHHHHhcCCccccccccccc
Confidence 34556677777776654 6899999999999999754 456899998776 55555543 4431
Q ss_pred -------cCCCeeEEEeCCccchh
Q 024362 69 -------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 -------~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 298 ~~~Gl~e~A~gGTLfLdeI~~Lp~ 321 (526)
T TIGR02329 298 GRTGLIEAAHRGTLFLDEIGEMPL 321 (526)
T ss_pred ccccchhhcCCceEEecChHhCCH
Confidence 12356799999998765
No 287
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.78 E-value=0.05 Score=45.84 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHhhc---------------CCcEEEEe---------ccccccChHHHHHHHHhcC--CCeeEEEeC
Q 024362 26 RRVGRGKSSLIAGMANFL---------------NFDVYDLE---------LSALLRGNMELRNLLIATE--NKSLLVVED 79 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---------------~~~iy~l~---------ls~~~~~d~~L~~lf~~~p--~~~IiliED 79 (268)
||.|+|||++..+++-.+ |+.+...+ +|.....--.|...+...+ ++.++||||
T Consensus 28 G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDE 107 (162)
T cd03227 28 GPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDE 107 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeC
Confidence 677899999999975444 33333333 2221111133455555545 889999999
Q ss_pred Cccchhhhhh
Q 024362 80 IDCSIELQNR 89 (268)
Q Consensus 80 ID~~~~~~~R 89 (268)
+....+...+
T Consensus 108 p~~gld~~~~ 117 (162)
T cd03227 108 IDRGLDPRDG 117 (162)
T ss_pred CCCCCCHHHH
Confidence 9988764433
No 288
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.76 E-value=0.031 Score=40.90 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+++..|+|||+++..+|..+ |+.+..++
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 46777999999999999998 77777666
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.73 E-value=0.084 Score=46.07 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=37.2
Q ss_pred HHHHHhhcCc-------cccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHh
Q 024362 13 DDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 13 ~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
..|+..|..- ..+|+||||||+|+..+|... |.++..++... ..+..++.+...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~--~~~~~~~~~~~~ 69 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG--LSSERFRQIAGD 69 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC--CCHHHHHHHHhH
Confidence 4566667531 268999999999999998665 67888887654 223556655544
No 290
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.72 E-value=0.054 Score=45.57 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=29.1
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
-|+.|+||||++..||+.+ |+.++.+.-.........++..+.
T Consensus 6 eG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 51 (200)
T cd01672 6 EGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLL 51 (200)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHh
Confidence 3789999999999999999 777766654331112234444433
No 291
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.72 E-value=0.025 Score=48.62 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-|++|+|||||+.+||+.++.+++.
T Consensus 7 l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EECCCCCCHHHHHHHHhccCCCeEEE
Confidence 45899999999999999999876554
No 292
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.70 E-value=0.27 Score=51.23 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhcCc----ccc--ccCCCCHHHHHHHHHhhcC----------CcEEEEeccccc-------------
Q 024362 6 DVKKMIMDDLEMFLKRK----DFH--RRVGRGKSSLIAGMANFLN----------FDVYDLELSALL------------- 56 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~----~~Y--~~~GTGKTSl~~AlA~~l~----------~~iy~l~ls~~~------------- 56 (268)
....+|-+=++.|+... .+| |-||||||.++..+-..|. ++++.||.-...
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~l 482 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEAL 482 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhc
Confidence 34455556666666662 255 7899999999999988664 555566543311
Q ss_pred ----cCh----HHHHHHHHhcC----CCeeEEEeCCccchhhhhhhhhhc-------CCCCceee----eee-----ccc
Q 024362 57 ----RGN----MELRNLLIATE----NKSLLVVEDIDCSIELQNRHAQAL-------AVNPMVSN----MNY-----TAR 108 (268)
Q Consensus 57 ----~~d----~~L~~lf~~~p----~~~IiliEDID~~~~~~~R~~~~~-------~~~~~~vT----LN~-----kiR 108 (268)
.+. +.|..-|. .| +.|||||||.|... +|...-- .-..++++ =|. ++=
T Consensus 483 sg~~~~~~~al~~L~~~f~-~~k~~~~~~VvLiDElD~Lv---tr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l 558 (767)
T KOG1514|consen 483 SGERVTWDAALEALNFRFT-VPKPKRSTTVVLIDELDILV---TRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLL 558 (767)
T ss_pred ccCcccHHHHHHHHHHhhc-cCCCCCCCEEEEeccHHHHh---cccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHh
Confidence 011 22333333 22 48999999999876 3433210 11234444 233 477
Q ss_pred CCCCcccccccc
Q 024362 109 PGINQGPQVGSK 120 (268)
Q Consensus 109 PGRvD~~I~~f~ 120 (268)
++||=-.+ +|.
T Consensus 559 ~nrvsSRl-g~t 569 (767)
T KOG1514|consen 559 MNRVSSRL-GLT 569 (767)
T ss_pred ccchhhhc-cce
Confidence 77777777 665
No 293
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.69 E-value=0.047 Score=48.72 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=28.7
Q ss_pred ccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHHH
Q 024362 26 RRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNMEL 62 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~L 62 (268)
|++|+|||||+.+|++.+. ..+..+++.+...+...+
T Consensus 6 G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~ 47 (220)
T cd02025 6 GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKEL 47 (220)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHH
Confidence 7899999999999999984 467788877754444444
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.12 Score=52.55 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=39.6
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEecccc---------------------ccChHHHHHHHHhcCCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSAL---------------------LRGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~---------------------~~~d~~L~~lf~~~p~~~Iili 77 (268)
+.|+.|+|||+++..||..+ +..|..++.... ..+...|..++..+....+|||
T Consensus 355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLI 434 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLI 434 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEe
Confidence 45889999999999999865 345666654220 1234567777887777778886
Q ss_pred eCC
Q 024362 78 EDI 80 (268)
Q Consensus 78 EDI 80 (268)
|..
T Consensus 435 DTa 437 (559)
T PRK12727 435 DTA 437 (559)
T ss_pred cCC
Confidence 664
No 295
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=94.62 E-value=0.037 Score=58.95 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=48.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc--------------------CCCeeEEEeCCccch
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT--------------------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~--------------------p~~~IiliEDID~~~ 84 (268)
+|++|.|||+.++++|..+|++|+..|-+. ..+...|..-+..+ ..+-|||+||||..+
T Consensus 363 ~G~pGigKT~~~h~~~k~~g~~v~E~Nas~-~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~ 441 (871)
T KOG1968|consen 363 SGPPGIGKTTAAHKAAKELGFKVVEKNASD-VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMF 441 (871)
T ss_pred cCCCCCCchhhHhhhhhhcccceeecCccc-cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccccc
Confidence 689999999999999999999999999987 43444443322221 114499999999998
Q ss_pred hhhhhh
Q 024362 85 ELQNRH 90 (268)
Q Consensus 85 ~~~~R~ 90 (268)
. .+|.
T Consensus 442 ~-~dRg 446 (871)
T KOG1968|consen 442 G-EDRG 446 (871)
T ss_pred c-hhhh
Confidence 6 4554
No 296
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.62 E-value=0.025 Score=51.00 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.2
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
|+.|+|||||+.+||.+++..++.
T Consensus 11 G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 11 GMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred cccccCHHHHHHHHHHHhCCceee
Confidence 788999999999999999976554
No 297
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.096 Score=55.23 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhcCc-cccccCCCCHHHHHHHHHhhc----------CCcEEEEecccccc-------ChHHHHHHHHhc
Q 024362 8 KKMIMDDLEMFLKRK-DFHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALLR-------GNMELRNLLIAT 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~-~~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~~-------~d~~L~~lf~~~ 69 (268)
.+.++.-+.+..++. -.-|+||.|||.++-.+|... +..+|.+++++.+. =++.|+.++..+
T Consensus 179 I~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev 258 (786)
T COG0542 179 IRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV 258 (786)
T ss_pred HHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH
Confidence 334444444444433 388999999999999999754 78899999988432 347888888877
Q ss_pred C--CCeeEEEeCCccch
Q 024362 70 E--NKSLLVVEDIDCSI 84 (268)
Q Consensus 70 p--~~~IiliEDID~~~ 84 (268)
. .+.|+|||||....
T Consensus 259 ~~~~~vILFIDEiHtiV 275 (786)
T COG0542 259 EKSKNVILFIDEIHTIV 275 (786)
T ss_pred hcCCCeEEEEechhhhc
Confidence 4 38999999999864
No 298
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.53 E-value=0.027 Score=48.94 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=33.7
Q ss_pred ccccCCCCHHHHHHHH----HhhcCCcEEEEeccccc---cCh---------------------HHHHHHHHhcCCCeeE
Q 024362 24 FHRRVGRGKSSLIAGM----ANFLNFDVYDLELSALL---RGN---------------------MELRNLLIATENKSLL 75 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~Al----A~~l~~~iy~l~ls~~~---~~d---------------------~~L~~lf~~~p~~~Ii 75 (268)
+.|.||+|||+.+... |-.-|..||. |+.... ... ..--.....+|..+||
T Consensus 5 ~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 83 (193)
T PF05707_consen 5 ITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGSLI 83 (193)
T ss_dssp EE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-EE
T ss_pred EEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCcEE
Confidence 4589999999988666 3334888887 765211 000 0112233446689999
Q ss_pred EEeCCccchh
Q 024362 76 VVEDIDCSIE 85 (268)
Q Consensus 76 liEDID~~~~ 85 (268)
||||+...+.
T Consensus 84 viDEa~~~~~ 93 (193)
T PF05707_consen 84 VIDEAQNFFP 93 (193)
T ss_dssp EETTGGGTSB
T ss_pred EEECChhhcC
Confidence 9999999887
No 299
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.12 Score=42.85 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEecccc------------------ccChHHHHHHH---H
Q 024362 12 MDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL------------------LRGNMELRNLL---I 67 (268)
Q Consensus 12 ~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~------------------~~~d~~L~~lf---~ 67 (268)
+.++.--+.+.+ ..|+.|+|||+|..+|+|.+..+-=.+.+... .++-.+.+++. .
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARA 94 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHH
Confidence 334433344433 35899999999999999987532111111110 02233333221 1
Q ss_pred hcCCCeeEEEeCCccchhhhhh
Q 024362 68 ATENKSLLVVEDIDCSIELQNR 89 (268)
Q Consensus 68 ~~p~~~IiliEDID~~~~~~~R 89 (268)
-+..+.++++||..+..+...+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHH
Confidence 2346789999998887764443
No 300
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.50 E-value=0.13 Score=49.81 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHH-Hh------------
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLL-IA------------ 68 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf-~~------------ 68 (268)
-.+++..+..+..... ..+..||||+.++.+|.... +.+++.++... ++++.+...+ ..
T Consensus 143 ~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~--~~~~~~~~~lfg~~~~~~~~~~~~~ 220 (463)
T TIGR01818 143 MQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA--IPKDLIESELFGHEKGAFTGANTRR 220 (463)
T ss_pred HHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC--CCHHHHHHHhcCCCCCCCCCcccCC
Confidence 3455566655444332 67999999999999998764 46888888776 5666665443 21
Q ss_pred -----cCCCeeEEEeCCccchh
Q 024362 69 -----TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 -----~p~~~IiliEDID~~~~ 85 (268)
......++|||||....
T Consensus 221 ~g~~~~a~~gtl~l~ei~~l~~ 242 (463)
T TIGR01818 221 QGRFEQADGGTLFLDEIGDMPL 242 (463)
T ss_pred CCcEEECCCCeEEEEchhhCCH
Confidence 12367899999999765
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.47 E-value=0.04 Score=46.32 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~ 54 (268)
.+|+||||||+|+..+|.. -|..+..+++..
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3799999999999876554 377888887753
No 302
>PRK04040 adenylate kinase; Provisional
Probab=94.46 E-value=0.031 Score=48.82 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.8
Q ss_pred ccccCCCCHHHHHHHHHhhc--CCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL--NFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l--~~~iy 48 (268)
.+|.|||||||++..++..+ ++.++
T Consensus 7 v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 7 VTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 57999999999999999999 65553
No 303
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.41 E-value=0.058 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.2
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
|++||||||++..||..|||.+...
T Consensus 8 G~~GsGKST~ak~la~~l~~~~~~~ 32 (712)
T PRK09518 8 GPAGVGKSSVSRALAQYLGYAYLDT 32 (712)
T ss_pred CCCCCCHHHHHHHHHHHhCCcEeec
Confidence 8999999999999999999876544
No 304
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.41 E-value=0.091 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
++|+||||||+++.++|..++-+
T Consensus 42 l~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 42 LIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred EECCCCCCHHHHHHHHHHHcCch
Confidence 78999999999999999999755
No 305
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.38 E-value=0.098 Score=51.41 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.1
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~ 54 (268)
+.|+.|+|||+++..||..+ +..|..++...
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 57899999999999998865 46788887654
No 306
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.31 E-value=0.043 Score=47.27 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.1
Q ss_pred cccCCCCHHHHHHHHHhhc-CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL-NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~ 54 (268)
-|++|+|||+|+.+|++.+ +..++.+++..
T Consensus 5 ~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 5 AGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 3789999999999999997 34566666654
No 307
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.046 Score=55.15 Aligned_cols=60 Identities=15% Similarity=0.327 Sum_probs=40.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcE------------------------EEEeccccccChHHHHHHHHhc---C---CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDV------------------------YDLELSALLRGNMELRNLLIAT---E---NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~i------------------------y~l~ls~~~~~d~~L~~lf~~~---p---~~~ 73 (268)
|-|+|||||||+++.+|..+++.- ..++..+ ...=++.|.+..++ | +.-
T Consensus 43 fsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaAS-n~gVddiR~i~e~v~y~P~~~ryK 121 (515)
T COG2812 43 FSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAAS-NTGVDDIREIIEKVNYAPSEGRYK 121 (515)
T ss_pred hcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhh-ccChHHHHHHHHHhccCCccccce
Confidence 669999999999999999887641 1222111 11225677777765 3 345
Q ss_pred eEEEeCCccch
Q 024362 74 LLVVEDIDCSI 84 (268)
Q Consensus 74 IiliEDID~~~ 84 (268)
|.+|||+.-..
T Consensus 122 VyiIDEvHMLS 132 (515)
T COG2812 122 VYIIDEVHMLS 132 (515)
T ss_pred EEEEecHHhhh
Confidence 99999988653
No 308
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.21 E-value=0.048 Score=47.49 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=24.5
Q ss_pred cccCCCCHHHHHHHHHhhc-CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL-NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~ 54 (268)
-|++|+|||+|+.+|++.+ +..+..++...
T Consensus 12 ~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 12 AGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 4889999999999999998 34666676654
No 309
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.18 E-value=0.15 Score=53.65 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEecccc---------ccChHHHHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSAL---------LRGNMELRNLL 66 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~---------~~~d~~L~~lf 66 (268)
.|+++|++.+- ..+.+.. +-|.+|||||+++.++...+ |+.|..+-.+.. +....++..++
T Consensus 352 ~Ls~~Q~~Av~----~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 352 RLSEEQYEAVR----HVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CCCHHHHHHHH----HHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence 36777777652 2344333 56999999999999987543 788888866552 11223444543
Q ss_pred Hh-------cCCCeeEEEeCCccc
Q 024362 67 IA-------TENKSLLVVEDIDCS 83 (268)
Q Consensus 67 ~~-------~p~~~IiliEDID~~ 83 (268)
.. +....+|+|||.--+
T Consensus 428 ~~~~~~~~~~~~~~llIvDEasMv 451 (744)
T TIGR02768 428 YAWANGRDLLSDKDVLVIDEAGMV 451 (744)
T ss_pred hhhccCcccCCCCcEEEEECcccC
Confidence 32 335789999995443
No 310
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.17 E-value=0.038 Score=48.39 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|+||+|||+++..||..+|+..+.+
T Consensus 4 i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 368999999999999999999877654
No 311
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.16 E-value=0.04 Score=48.43 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|+||+|||+++..||..+|+..+.+
T Consensus 5 v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 5 LLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 479999999999999999999877765
No 312
>PRK15115 response regulator GlrR; Provisional
Probab=94.13 E-value=0.17 Score=48.95 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=43.7
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHH-HHHh-----------------cCCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRN-LLIA-----------------TENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~-lf~~-----------------~p~~~IiliEDID~ 82 (268)
.++++|||||+++.+|.... +.+++.++... +++..+.. ||.. ......++|||||.
T Consensus 162 i~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~--~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~ 239 (444)
T PRK15115 162 INGQSGTGKEILAQAIHNASPRASKPFIAINCGA--LPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 (444)
T ss_pred EEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCC--CCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEcccc
Confidence 67999999999999997764 46888888776 56665543 3321 12356799999998
Q ss_pred chh
Q 024362 83 SIE 85 (268)
Q Consensus 83 ~~~ 85 (268)
.-.
T Consensus 240 l~~ 242 (444)
T PRK15115 240 MPA 242 (444)
T ss_pred CCH
Confidence 754
No 313
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.08 E-value=0.045 Score=49.14 Aligned_cols=28 Identities=36% Similarity=0.344 Sum_probs=24.0
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
-|.||+||||++.+||..+ +++++.++.
T Consensus 5 ~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 5 TGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 4889999999999999988 577777764
No 314
>PLN02200 adenylate kinase family protein
Probab=94.07 E-value=0.043 Score=49.54 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=22.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
..|+||+|||+++..||..+|+..+.
T Consensus 48 I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 48 VLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 36999999999999999999976433
No 315
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.02 E-value=0.044 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.1
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
|++|+||||++..||..+++.++.
T Consensus 9 G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 9 GPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred CCCCCCHHHHHHHHHHHhCCceee
Confidence 789999999999999999988775
No 316
>PRK14527 adenylate kinase; Provisional
Probab=93.99 E-value=0.032 Score=48.09 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.+|+||+|||+++..||..+|+..+..
T Consensus 11 i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 11 FLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 579999999999999999998765543
No 317
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.97 E-value=0.16 Score=46.53 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHhhcCc-------cccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHh
Q 024362 13 DDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 13 ~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
..|+.+|.+. +.||++|||||-||.-||-.. +-.+++++-.. ..+-..|.++...
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~-~f~~~Rl~~i~~~ 95 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG-TFSPERLQQIAER 95 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS-SS-HHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC-CCCHHHHHHHhhc
Confidence 4678888763 489999999999998777433 44588888665 5666777776654
No 318
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.93 E-value=0.044 Score=49.48 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|+||+|||+++..||..+|+.++.++
T Consensus 11 l~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 11 LFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 5799999999999999999998766543
No 319
>PRK14526 adenylate kinase; Provisional
Probab=93.87 E-value=0.048 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
++|+||+|||+++..||..+++..+.
T Consensus 5 l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 5 FLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceee
Confidence 57999999999999999999876543
No 320
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.86 E-value=0.054 Score=46.68 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.9
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEecccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSAL 55 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~ 55 (268)
|.+|+|||+|+..|+..+ |.++..+++.+.
T Consensus 6 G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 6 GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 789999999999999998 578888887764
No 321
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.83 E-value=0.12 Score=45.49 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
.||++|||||+|+..+|... +..++.++... ..+...|..++..
T Consensus 24 i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~-~~~~~rl~~~~~~ 76 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG-TFRPERLVQIAER 76 (235)
T ss_pred EECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC-CcCHHHHHHHHHH
Confidence 79999999999999887442 25777777655 3344555555443
No 322
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.28 Score=48.46 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhcCc----------cccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 6 DVKKMIMDDLEMFLKRK----------DFHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~----------~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
..+..++..+..++... -+.|+.|+||||++..||..+ |..+..++.
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 35666666666666432 167899999999999999877 455666655
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.81 E-value=0.11 Score=45.98 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=38.0
Q ss_pred ccccCCCCHHHHHHHHHh-----hcCCcEEEEec---------cc-----c---ccC-----hHHHHHHHHhcCCCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMAN-----FLNFDVYDLEL---------SA-----L---LRG-----NMELRNLLIATENKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-----~l~~~iy~l~l---------s~-----~---~~~-----d~~L~~lf~~~p~~~Iil 76 (268)
..|+.|+|||+|.++++. ..|+.+..-+. +. . .++ =..+..++..+..+++||
T Consensus 34 itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvl 113 (213)
T cd03281 34 ITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVL 113 (213)
T ss_pred EECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEE
Confidence 578999999999999983 33443322111 00 0 001 033444555567899999
Q ss_pred EeCCccchh
Q 024362 77 VEDIDCSIE 85 (268)
Q Consensus 77 iEDID~~~~ 85 (268)
|||+-....
T Consensus 114 lDE~~~gtd 122 (213)
T cd03281 114 IDEFGKGTD 122 (213)
T ss_pred eccccCCCC
Confidence 999887654
No 324
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=93.79 E-value=0.18 Score=48.35 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccccChHHHHHHH-Hh-------------
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALLRGNMELRNLL-IA------------- 68 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~~~d~~L~~lf-~~------------- 68 (268)
..++.++..+-.... .++.+||||+.++.+|-.. .+.+++.++.+. ++++.+...+ ..
T Consensus 149 ~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~--~~~~~~~~~lfg~~~~~~~~~~~~~~ 226 (441)
T PRK10365 149 QHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAA--LNESLLESELFGHEKGAFTGADKRRE 226 (441)
T ss_pred HHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCC--CCHHHHHHHhcCCCCCCcCCCCcCCC
Confidence 445566644433322 6799999999999999644 456899999876 5666665433 21
Q ss_pred ----cCCCeeEEEeCCccchh
Q 024362 69 ----TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ----~p~~~IiliEDID~~~~ 85 (268)
......++|||||....
T Consensus 227 g~~~~a~~gtl~ldei~~l~~ 247 (441)
T PRK10365 227 GRFVEADGGTLFLDEIGDISP 247 (441)
T ss_pred CceeECCCCEEEEeccccCCH
Confidence 11367899999999865
No 325
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.78 E-value=0.12 Score=47.97 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred HHHHHhhcCc-------cccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHhc
Q 024362 13 DDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 13 ~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.+++..|..- ..||+||||||+||.-+|-.. +-.++.++... ..+.+.|.+++...
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~-~f~~~rl~~~~~~~ 153 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN-TFRPERIMQMAEAR 153 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC-CCCHHHHHHHHHHc
Confidence 4566666642 379999999999999887553 23778888765 45566777666543
No 326
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.76 E-value=0.11 Score=45.37 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=33.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---C------CcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---N------FDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~------~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.||++|+|||+|+..+|... + ..++.++... ..+...|..++...
T Consensus 24 I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~-~~~~~rl~~~~~~~ 77 (226)
T cd01393 24 IFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG-AFRPERLVQLAVRF 77 (226)
T ss_pred EeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC-CCCHHHHHHHHHHh
Confidence 79999999999999998753 2 5677777655 45566777776653
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.75 E-value=0.082 Score=52.24 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=42.2
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc-------------------cChHHHHHHHHhcC--CCeeEEEeC
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL-------------------RGNMELRNLLIATE--NKSLLVVED 79 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~-------------------~~d~~L~~lf~~~p--~~~IiliED 79 (268)
.||+||+|||+|+..+|..+ +..+++++..+.. ..+..+..++..+. .+.+|+||.
T Consensus 85 I~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVIDS 164 (446)
T PRK11823 85 IGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVIDS 164 (446)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEec
Confidence 68999999999999998866 6788888765410 01123444444442 466899999
Q ss_pred Cccch
Q 024362 80 IDCSI 84 (268)
Q Consensus 80 ID~~~ 84 (268)
|-...
T Consensus 165 Iq~l~ 169 (446)
T PRK11823 165 IQTMY 169 (446)
T ss_pred hhhhc
Confidence 98765
No 328
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.70 E-value=0.053 Score=46.75 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCcc--ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 11 IMDDLEMFLKRKD--FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 11 i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
-+..+..++.++. +.|+.|.|||||+.+|.+...+.+-.
T Consensus 25 g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~ 65 (161)
T PF03193_consen 25 GIEELKELLKGKTSVLLGQSGVGKSSLINALLPEAKQKTGE 65 (161)
T ss_dssp THHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----S-
T ss_pred CHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhcchhhhh
Confidence 3567888888875 88999999999999999987554433
No 329
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.69 E-value=0.045 Score=46.46 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=21.9
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
-|++|+||||++.+|+..++..++.+
T Consensus 8 ~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 8 NGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred ECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 48899999999999999988765543
No 330
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.67 E-value=0.16 Score=48.29 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCcc--------ccccCCCCHHHHHHHHHhhc
Q 024362 6 DVKKMIMDDLEMFLKRKD--------FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~--------~Y~~~GTGKTSl~~AlA~~l 43 (268)
-.++.|++-|+.|+.+.. |+|.+||||+..+..||..+
T Consensus 89 la~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 89 LAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 357889999999998752 99999999999999999975
No 331
>PLN02165 adenylate isopentenyltransferase
Probab=93.56 E-value=0.05 Score=52.10 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+|||+|+.+||..++..|+..+
T Consensus 48 IiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 48 IMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 5689999999999999999998766654
No 332
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.55 E-value=0.045 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=17.8
Q ss_pred cccCCCCHHHHHHHHHhhc
Q 024362 25 HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l 43 (268)
.|.+|+||||++..|+..+
T Consensus 4 ~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997
No 333
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.52 E-value=0.15 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++++|||||+|+..|++.+.-
T Consensus 21 I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 21 IVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EECCCCCCHHHHHHHHHhcccc
Confidence 7899999999999999998754
No 334
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.49 E-value=0.047 Score=48.88 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.-|++|+||||++..||..||+.+|....
T Consensus 9 i~g~~gsGksti~~~la~~~~~~~~~~~~ 37 (225)
T PRK00023 9 IDGPAGSGKGTVAKILAKKLGFHYLDTGA 37 (225)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccCch
Confidence 45899999999999999999999887655
No 335
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.49 E-value=0.076 Score=44.66 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=26.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+.|++|+|||+++..+|..+ |..+..++...
T Consensus 5 ~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 5 LVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 46899999999999999876 77888887654
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.49 E-value=0.13 Score=44.85 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|++|+||||++.++++++.
T Consensus 6 I~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 358999999999999999885
No 337
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.48 E-value=0.073 Score=44.96 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=23.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
+-|.+|+|||+++.+||+.+ |.+++.++.
T Consensus 9 ~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 9 FTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 45889999999999999998 556776654
No 338
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.47 E-value=0.35 Score=46.07 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=43.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEecc-ccccChHHHHHHHHhc---C---CC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELS-ALLRGNMELRNLLIAT---E---NK 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls-~~~~~d~~L~~lf~~~---p---~~ 72 (268)
|+|+.|+||++++.++|..+.. |++.+... .....=+.++.+...+ | .+
T Consensus 29 f~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~ 108 (325)
T PRK06871 29 FKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGN 108 (325)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCc
Confidence 7899999999999999999854 34445431 1124556777766554 2 35
Q ss_pred eeEEEeCCccchh
Q 024362 73 SLLVVEDIDCSIE 85 (268)
Q Consensus 73 ~IiliEDID~~~~ 85 (268)
-|++||+.|....
T Consensus 109 KV~iI~~a~~m~~ 121 (325)
T PRK06871 109 KVVYIQGAERLTE 121 (325)
T ss_pred eEEEEechhhhCH
Confidence 5899999998754
No 339
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.46 E-value=0.18 Score=39.93 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 4 i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 4 LVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEcCCCCCHHHHHHHHccC
Confidence 4589999999999999986
No 340
>PRK01184 hypothetical protein; Provisional
Probab=93.45 E-value=0.062 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=20.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
-|+||+||||++. +|..+|++++.
T Consensus 7 ~G~~GsGKsT~a~-~~~~~g~~~i~ 30 (184)
T PRK01184 7 VGMPGSGKGEFSK-IAREMGIPVVV 30 (184)
T ss_pred ECCCCCCHHHHHH-HHHHcCCcEEE
Confidence 4899999999876 88999987755
No 341
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=93.44 E-value=0.036 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
+||+.||||||++.||.-.|+-.
T Consensus 24 i~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 24 IYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp EEESTTSSHHHHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHHHcCC
Confidence 79999999999999999888654
No 342
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.42 E-value=0.17 Score=47.37 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHhhcCc-------cccccCCCCHHHHHHHHHhh---------cCCcEEEEeccccccChHHHHHHHHhc
Q 024362 12 MDDLEMFLKRK-------DFHRRVGRGKSSLIAGMANF---------LNFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 12 ~~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~---------l~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
..+++.+|... ..||++|||||+||.-+|-. ++-.+++++... ..+-+.|.+....+
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~-~f~~~rl~~~~~~~ 160 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG-TFRPERIEQMAEAL 160 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC-CcCHHHHHHHHHHc
Confidence 35666666642 27999999999999988854 244788888765 45567777766554
No 343
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.40 E-value=0.07 Score=45.68 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.6
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.|.+|+||||++..++. +|+.++..+
T Consensus 5 tG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 5 TGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred ECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 58899999999999999 888877655
No 344
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.38 E-value=0.066 Score=46.77 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=23.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCC-cEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF-DVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~-~iy~l~ls 53 (268)
..|++|+|||||+.+|++.++. ++..++..
T Consensus 11 I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D 41 (207)
T TIGR00235 11 IGGGSGSGKTTVARKIYEQLGKLEIVIISQD 41 (207)
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCeEeccc
Confidence 5689999999999999998863 45555443
No 345
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.34 E-value=0.2 Score=46.03 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCc--------cccccCCCCHHHHHHHHHhhcCCc----EEEEeccccccCh--HHHHHHHHhc
Q 024362 11 IMDDLEMFLKRK--------DFHRRVGRGKSSLIAGMANFLNFD----VYDLELSALLRGN--MELRNLLIAT 69 (268)
Q Consensus 11 i~~Di~~Fl~~~--------~~Y~~~GTGKTSl~~AlA~~l~~~----iy~l~ls~~~~~d--~~L~~lf~~~ 69 (268)
+.+-|.+++... ..||+.|+||||++..+-..+.-+ ++.+..+.+..++ +-+..++..+
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l 76 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEEL 76 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHH
Confidence 344455555543 279999999999999999999877 7777777765553 3334444443
No 346
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.30 E-value=0.068 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.001 Sum_probs=21.2
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~ 49 (268)
..|+|||||||++..||..+ ++.++.
T Consensus 7 l~G~pGSGKSTla~~L~~~~~~~~~l~ 33 (300)
T PHA02530 7 TVGVPGSGKSTWAREFAAKNPKAVNVN 33 (300)
T ss_pred EEcCCCCCHHHHHHHHHHHCCCCEEEe
Confidence 35899999999999999998 554333
No 347
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.19 Score=47.87 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=45.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccc--cccChHHHHHHHHhcC------C
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSA--LLRGNMELRNLLIATE------N 71 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~--~~~~d~~L~~lf~~~p------~ 71 (268)
|+|+.|+||++++.++|..+.. |++.+.... ....=+.++.+...+. .
T Consensus 29 f~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~ 108 (334)
T PRK07993 29 IQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGG 108 (334)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCC
Confidence 8999999999999999999843 455554322 1345567777776652 3
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
+-|++||+.|..-.
T Consensus 109 ~kV~iI~~ae~m~~ 122 (334)
T PRK07993 109 AKVVWLPDAALLTD 122 (334)
T ss_pred ceEEEEcchHhhCH
Confidence 56999999998754
No 348
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.23 E-value=0.13 Score=45.42 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
+-++||||||+|+..+|-.+ |.+++.+++-.
T Consensus 18 I~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 18 IAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 56899999999988877655 89999999864
No 349
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=93.21 E-value=0.052 Score=55.86 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=19.2
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
++|++|||||+++.+|+..+
T Consensus 30 i~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 30 IRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred EEcCCCCcHHHHHHHHHHhC
Confidence 78999999999999999998
No 350
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.18 E-value=0.16 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++++|+|||+|..+||+.+..
T Consensus 116 i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 116 IISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEcCCCCCHHHHHHHHhCccCC
Confidence 4799999999999999999854
No 351
>smart00350 MCM minichromosome maintenance proteins.
Probab=93.18 E-value=0.044 Score=54.84 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=39.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec--cccccChHHHHHHH----------HhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL--SALLRGNMELRNLL----------IATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l--s~~~~~d~~L~~lf----------~~~p~~~IiliEDID~~~~ 85 (268)
.+|+||||||.|+.+++......+|.... +..+++...++.-+ ..+....+++|||||.+-.
T Consensus 241 L~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~ 314 (509)
T smart00350 241 LLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred EeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH
Confidence 57999999999999999988776666421 11112222221111 0123467999999999754
No 352
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.17 E-value=0.08 Score=46.70 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
..|.||+|||+++..||..+|+.+
T Consensus 8 i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 8 IGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeE
Confidence 358899999999999999998754
No 353
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.17 E-value=0.22 Score=49.04 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.3
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+.+++|||||+|+.+|++.+.
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EECCCCCChhHHHHHHHHhhc
Confidence 889999999999999999854
No 354
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.16 E-value=0.057 Score=51.54 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=19.5
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
++|+||||||+++.++|+.+
T Consensus 34 l~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 34 VFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred EEcCCCCCHHHHHHHHHHHC
Confidence 89999999999999999999
No 355
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.09 E-value=0.066 Score=46.56 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=21.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|+||+||||+|..||..++ +.-+|.
T Consensus 5 ilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred EECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 468999999999999999944 555553
No 356
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.07 E-value=0.078 Score=50.20 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCc-cccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 10 MIMDDLEMFLKRK-DFHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 10 ~i~~Di~~Fl~~~-~~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.|..-+..|+... -..|.+|||||+|+.+||+.++..++.
T Consensus 152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 3445556666544 377999999999999999999988743
No 357
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.05 E-value=0.081 Score=44.69 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=22.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC---CcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---FDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ 51 (268)
+-|.+|+||||++.+|++.|. ..++.++
T Consensus 12 i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 12 ITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 468999999999999999986 3355554
No 358
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.02 E-value=0.41 Score=46.22 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHH-HHh--------------
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNL-LIA-------------- 68 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~l-f~~-------------- 68 (268)
.+..-+..+..... .+|.+||||+.++.++.... +-+++.++.+. +.++.+... |..
T Consensus 150 ~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~--~~~~~~~~~lfg~~~~~~~~~~~~~~g 227 (445)
T TIGR02915 150 KICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAA--IPENLLESELFGYEKGAFTGAVKQTLG 227 (445)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCC--CChHHHHHHhcCCCCCCcCCCccCCCC
Confidence 34444444433322 57999999999999997654 45788888776 566666443 321
Q ss_pred ---cCCCeeEEEeCCccchh
Q 024362 69 ---TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ---~p~~~IiliEDID~~~~ 85 (268)
......++|||||..-.
T Consensus 228 ~~~~a~~gtl~l~~i~~l~~ 247 (445)
T TIGR02915 228 KIEYAHGGTLFLDEIGDLPL 247 (445)
T ss_pred ceeECCCCEEEEechhhCCH
Confidence 12356899999999764
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.97 E-value=0.15 Score=49.45 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=40.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc-------------------cChHHHHHHHHhc--CCCeeEEEeC
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL-------------------RGNMELRNLLIAT--ENKSLLVVED 79 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~-------------------~~d~~L~~lf~~~--p~~~IiliED 79 (268)
+||+||+|||+|+..+|..+ +..+++++..... ..+..+..++..+ ..+.+|+||.
T Consensus 87 I~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVIDS 166 (372)
T cd01121 87 IGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIIDS 166 (372)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEcc
Confidence 78999999999999998765 3578777654310 1112233343333 3577899999
Q ss_pred Cccch
Q 024362 80 IDCSI 84 (268)
Q Consensus 80 ID~~~ 84 (268)
|....
T Consensus 167 Iq~l~ 171 (372)
T cd01121 167 IQTVY 171 (372)
T ss_pred hHHhh
Confidence 87664
No 360
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.94 E-value=0.4 Score=45.57 Aligned_cols=190 Identities=14% Similarity=-0.006 Sum_probs=93.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCC-----------------------cEEEEecc--ccccChHHHHHHHHhc---C---CC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF-----------------------DVYDLELS--ALLRGNMELRNLLIAT---E---NK 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~-----------------------~iy~l~ls--~~~~~d~~L~~lf~~~---p---~~ 72 (268)
|+|+.|+||++++.++|..+.. |++.+... .....=+.++.+...+ | ..
T Consensus 30 ~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~ 109 (319)
T PRK06090 30 LQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGY 109 (319)
T ss_pred eECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCc
Confidence 7899999999999999998743 56666543 1234556677665443 2 25
Q ss_pred eeEEEeCCccchhhh-hhhhhhcCCCCceee--eeecccCCCCccccccccccccccCCCchhhHHHHHHhhhcCCCChH
Q 024362 73 SLLVVEDIDCSIELQ-NRHAQALAVNPMVSN--MNYTARPGINQGPQVGSKCWAPTTLESEHPFSLEIEELTEKVMVTPA 149 (268)
Q Consensus 73 ~IiliEDID~~~~~~-~R~~~~~~~~~~~vT--LN~kiRPGRvD~~I~~f~~~a~~y~~~~~~lf~~i~~~~~~~~~tpA 149 (268)
-|++|++.|...... +--=+.-++....+. |=+ -.|.|+==.|-..++...+.....+.... .+...+++.+
T Consensus 110 kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t-~~~~~lLpTI~SRCq~~~~~~~~~~~~~~----~L~~~~~~~~ 184 (319)
T PRK06090 110 RLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVT-HNQKRLLPTIVSRCQQWVVTPPSTAQAMQ----WLKGQGITVP 184 (319)
T ss_pred eEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEE-CChhhChHHHHhcceeEeCCCCCHHHHHH----HHHHcCCchH
Confidence 699999999875410 000000011111111 111 11222222221222111111112222222 2222223322
Q ss_pred HHHHHhhcCCCHHHHHhhhH-HHhhhh-hhHHHHHHhccccCCChHHHhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 024362 150 DVAERLMRSEVPEVALRDLI-DFLKNK-KREQEVEELTEKVMVTPADVAERLMRSEVPEVALRDLIDFLKIKKR 221 (268)
Q Consensus 150 ei~~~l~~~~d~~~al~~~~-~~Lk~h-~l~~eIe~li~e~~~SPAEVqg~Ll~k~dp~~Al~~l~~wl~~~~~ 221 (268)
.. ..-+..++|..|++-+. .+.... .....+...+.....++-++++++-+.. ...+.-+..|+.....
T Consensus 185 ~~-~l~l~~G~p~~A~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~--~~~l~~L~~ll~Dll~ 255 (319)
T PRK06090 185 AY-ALKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGPVSDQLKCASLIAADP--LTHLSWLWLLLTDAQK 255 (319)
T ss_pred HH-HHHHcCCCHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCcccHHHHHHHHhcCc--HHHHHHHHHHHHHHHH
Confidence 11 11123577777765443 222222 2344555555666678888888885432 3366777778776554
No 361
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=92.90 E-value=0.045 Score=52.20 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred ccccCCCCHHHHHHHHHhhcC--CcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--FDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--~~iy~l~ls~ 54 (268)
+-+|||||||.|+.||+.+|| .+||.+..|+
T Consensus 69 laGppgtGKTAlAlaisqELG~kvPFcpmvgSE 101 (456)
T KOG1942|consen 69 LAGPPGTGKTALALAISQELGPKVPFCPMVGSE 101 (456)
T ss_pred EecCCCCchhHHHHHHHHHhCCCCCcccccchh
Confidence 679999999999999999996 5777777777
No 362
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=92.83 E-value=0.09 Score=45.15 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|||||+++..++...+++++..+
T Consensus 4 itG~~gsGKst~~~~l~~~~~~~~i~~D 31 (188)
T TIGR00152 4 LTGGIGSGKSTVANYLADKYHFPVIDAD 31 (188)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCC
Confidence 3588999999999999999878887654
No 363
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=92.82 E-value=0.075 Score=45.43 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=20.5
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
-|..|+||||++.+|+.++++.+.
T Consensus 5 eG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 5 EGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred ECCCCCCHHHHHHHHHHHhCCccc
Confidence 478999999999999999876543
No 364
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=92.81 E-value=0.097 Score=46.61 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=34.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc-Ch-HHHHHHHHhcCCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR-GN-MELRNLLIATENK 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~-~d-~~L~~lf~~~p~~ 72 (268)
..|.+|+|||+++..++..+|++++..+.-...+ .. .-+..++...+..
T Consensus 11 lTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~ 61 (204)
T PRK14733 11 ITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDE 61 (204)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHH
Confidence 5689999999999999999999988877544221 22 2345555555543
No 365
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.79 E-value=0.17 Score=43.26 Aligned_cols=43 Identities=28% Similarity=0.210 Sum_probs=28.1
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
=|+.|+||||++..|+..+ |..++...-.........++.++.
T Consensus 9 eG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 54 (205)
T PRK00698 9 EGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLL 54 (205)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHh
Confidence 3889999999999999987 455555543321223344555554
No 366
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.79 E-value=0.15 Score=48.15 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=38.2
Q ss_pred HHHHhhcCc-------cccccCCCCHHHHHHHHHh---------hcCCcEEEEeccccccChHHHHHHHHhc
Q 024362 14 DLEMFLKRK-------DFHRRVGRGKSSLIAGMAN---------FLNFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 14 Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~---------~l~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.++..|... ..||++|||||.||+-+|- -.+-.+++++.-. ..+.++|..+...+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~-~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG-TFRPDRIRAIAERF 154 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC-CCCHHHHHHHHHHc
Confidence 455556541 3799999999999987662 2355788888765 45667777766654
No 367
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.70 E-value=0.078 Score=41.12 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=16.8
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.|++|+|||||+..+++...
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS-
T ss_pred ECcCCCCHHHHHHHHhcCCC
Confidence 47899999999999998643
No 368
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.69 E-value=0.085 Score=47.76 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=38.4
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEec------------cccccChHHHHHHHHhcCC---C-eeEEEeCCccch
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLEL------------SALLRGNMELRNLLIATEN---K-SLLVVEDIDCSI 84 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~l------------s~~~~~d~~L~~lf~~~p~---~-~IiliEDID~~~ 84 (268)
||.|+||||+++.||..||+.+..--+ .-...+.+.+..++..++- + -=|++++-|-..
T Consensus 11 GPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs~ 85 (222)
T COG0283 11 GPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVSE 85 (222)
T ss_pred CCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhhh
Confidence 799999999999999999998765211 1111234666777776652 2 235556655543
No 369
>PF13479 AAA_24: AAA domain
Probab=92.64 E-value=0.2 Score=44.25 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=36.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc--------------ccChHHHHHHHHhc----CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL--------------LRGNMELRNLLIAT----ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~--------------~~~d~~L~~lf~~~----p~~~IiliEDID~~~~ 85 (268)
-||++|+|||||+.-+- +...|+.-.. ..+.+++...+..+ ..--.|+||-|+.+..
T Consensus 8 IyG~~G~GKTt~a~~~~-----k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~ 82 (213)
T PF13479_consen 8 IYGPPGSGKTTLAASLP-----KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLED 82 (213)
T ss_pred EECCCCCCHHHHHHhCC-----CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHH
Confidence 59999999999998872 2333332221 13557777766543 3445788898888754
No 370
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.62 E-value=0.29 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++++|||||+|+..||+.+.-
T Consensus 138 IvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 138 IVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999997743
No 371
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.62 E-value=0.38 Score=50.34 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhhcCc--cccccCCCCHHHHHHHHHhhc---C--CcEEEEecccc---------ccChHHHHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKRK--DFHRRVGRGKSSLIAGMANFL---N--FDVYDLELSAL---------LRGNMELRNLL 66 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~--~~Y~~~GTGKTSl~~AlA~~l---~--~~iy~l~ls~~---------~~~d~~L~~lf 66 (268)
|+++|++.+.. .+..+ -.-|.+|||||+++.+|...+ + ..|+.+..+.. +....++.++|
T Consensus 324 l~~~Q~~Ai~~----~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 324 LSEEQKQALDT----AIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CCHHHHHHHHH----HHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHh
Confidence 55666665433 22322 146999999999999886655 4 67777765542 12224566666
Q ss_pred HhcC------------CCeeEEEeCCccc
Q 024362 67 IATE------------NKSLLVVEDIDCS 83 (268)
Q Consensus 67 ~~~p------------~~~IiliEDID~~ 83 (268)
...+ ...+|+|||.--+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMv 428 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMM 428 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccC
Confidence 4322 2468888985443
No 372
>PRK12338 hypothetical protein; Provisional
Probab=92.62 E-value=0.093 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred cccCCCCHHHHHHHHHhhcCCcE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
-|.+||||||++.+||..+|+..
T Consensus 10 ~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 10 GSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred ECCCCCCHHHHHHHHHHHCCCeE
Confidence 47899999999999999999764
No 373
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.60 E-value=0.17 Score=45.61 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
..+++|+|||+|+..+|..+ |.++..+++-.
T Consensus 35 i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 35 LTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 57899999999999887764 88999998865
No 374
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.60 E-value=0.19 Score=43.34 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|++|+|||+|+.+||+.++..
T Consensus 8 l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 8 LMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EECCCCCCHHHHHHHHHHhcCCE
Confidence 46899999999999999999874
No 375
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.59 E-value=0.097 Score=45.98 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=21.8
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
|.+|+|||+|+..|+..++ .+..+++.+
T Consensus 6 G~sgsGKTtla~~l~~~~~-~~~~i~~Dd 33 (187)
T cd02024 6 GVTNSGKTTLAKLLQRILP-NCCVIHQDD 33 (187)
T ss_pred CCCCCCHHHHHHHHHHHcC-CCeEEcccc
Confidence 6789999999999999984 344455554
No 376
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.56 E-value=0.05 Score=52.44 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcCCcE
Q 024362 11 IMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 11 i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
.++|+.-.+.+.+| -||.||||||+-++|||.-.-+=
T Consensus 20 av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~ 59 (352)
T COG3842 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59 (352)
T ss_pred EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 34566666777664 59999999999999999765443
No 377
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.52 E-value=0.45 Score=40.92 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=39.0
Q ss_pred cccCCCCHHHHHHHHH-----hhcCCcE--------------EEEeccccc--------cChHHHHHHHHhcCCCeeEEE
Q 024362 25 HRRVGRGKSSLIAGMA-----NFLNFDV--------------YDLELSALL--------RGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA-----~~l~~~i--------------y~l~ls~~~--------~~d~~L~~lf~~~p~~~Iili 77 (268)
.|+.|.|||+|.+++| ...|..+ ..+.+.+.. ..-..+..++..+..++++|+
T Consensus 5 tG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llll 84 (185)
T smart00534 5 TGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSLVLL 84 (185)
T ss_pred ECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5888999999999998 2334332 112221100 011345666777778999999
Q ss_pred eCCccchhh
Q 024362 78 EDIDCSIEL 86 (268)
Q Consensus 78 EDID~~~~~ 86 (268)
||+-.....
T Consensus 85 DEp~~g~d~ 93 (185)
T smart00534 85 DELGRGTST 93 (185)
T ss_pred ecCCCCCCH
Confidence 998776553
No 378
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.51 E-value=0.2 Score=46.34 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=31.8
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccccc-----c----ChHHHHHHHH-----hcCCCeeEEEeCCcc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSALL-----R----GNMELRNLLI-----ATENKSLLVVEDIDC 82 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~-----~----~d~~L~~lf~-----~~p~~~IiliEDID~ 82 (268)
.|-||+|||+++..|+.+| ++.+..++-.... . .+..++..+. .+....||++||.--
T Consensus 7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY 81 (270)
T ss_dssp E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch
Confidence 5789999999999999985 6888888743321 1 1222332222 346678999998653
No 379
>PRK13975 thymidylate kinase; Provisional
Probab=92.49 E-value=0.15 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
+-|++|+||||++..||..|+..
T Consensus 7 ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 7 FEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 45899999999999999999863
No 380
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.48 E-value=0.35 Score=52.98 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEecccc---------ccChHHHHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSAL---------LRGNMELRNLL 66 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~---------~~~d~~L~~lf 66 (268)
.|+++|++.|.. + ..+.. +-|.+|||||++..++... .|+.|+-+-++.. +..-.++..++
T Consensus 381 ~Ls~eQ~~Av~~-i---~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 381 RLSDEQKTAIEH-V---AGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CCCHHHHHHHHH-H---hccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH
Confidence 477888887533 3 23332 6799999999999998774 4889988876653 12223455543
Q ss_pred Hh-------cCCCeeEEEeCCccch
Q 024362 67 IA-------TENKSLLVVEDIDCSI 84 (268)
Q Consensus 67 ~~-------~p~~~IiliEDID~~~ 84 (268)
.. ++.+.||||||.--+.
T Consensus 457 l~~~~~~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 457 LRWNQGRDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred hhhccCccCCCCCcEEEEECcccCC
Confidence 22 3457899999965544
No 381
>PTZ00202 tuzin; Provisional
Probab=92.47 E-value=0.18 Score=50.62 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=37.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE 70 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p 70 (268)
.-|++|||||+|+..++..++...|.+|+.. .++-|+.++..+.
T Consensus 291 LtG~~G~GKTTLlR~~~~~l~~~qL~vNprg---~eElLr~LL~ALG 334 (550)
T PTZ00202 291 FTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG---TEDTLRSVVKALG 334 (550)
T ss_pred EECCCCCCHHHHHHHHHhcCCceEEEECCCC---HHHHHHHHHHHcC
Confidence 5689999999999999999999999999874 2566777777775
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.46 E-value=0.31 Score=42.29 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=37.3
Q ss_pred ccccCCCCHHHHHHHHH--------hhc-----CCcE------E-EEecccc---cc-----ChHHHHHHHHhcCCCeeE
Q 024362 24 FHRRVGRGKSSLIAGMA--------NFL-----NFDV------Y-DLELSAL---LR-----GNMELRNLLIATENKSLL 75 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA--------~~l-----~~~i------y-~l~ls~~---~~-----~d~~L~~lf~~~p~~~Ii 75 (268)
..|+.|+|||+|.+.|+ |.+ +..+ + .+.+... .+ .-..+..++..+.++.++
T Consensus 33 ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~ll 112 (200)
T cd03280 33 ITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLV 112 (200)
T ss_pred EECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEE
Confidence 46899999999999999 422 0111 1 0111100 00 012344555567789999
Q ss_pred EEeCCccchhh
Q 024362 76 VVEDIDCSIEL 86 (268)
Q Consensus 76 liEDID~~~~~ 86 (268)
|+||.-+....
T Consensus 113 llDEp~~glD~ 123 (200)
T cd03280 113 LLDELGSGTDP 123 (200)
T ss_pred EEcCCCCCCCH
Confidence 99998876653
No 383
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.43 E-value=0.34 Score=43.56 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=37.6
Q ss_pred ccccCCCCHHHHHHHHHh-h----cCCcE---------E-----EEeccccc--------cChHHHHHHHHhcCCCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMAN-F----LNFDV---------Y-----DLELSALL--------RGNMELRNLLIATENKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-~----l~~~i---------y-----~l~ls~~~--------~~d~~L~~lf~~~p~~~Iil 76 (268)
.-|+.|+|||++...+++ . .|..+ + .+.-++.. ..=.++..++..+.++++||
T Consensus 36 itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvl 115 (222)
T cd03287 36 ITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVI 115 (222)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEE
Confidence 457888999999999998 1 12211 1 11111100 01144667788888999999
Q ss_pred EeCCccc
Q 024362 77 VEDIDCS 83 (268)
Q Consensus 77 iEDID~~ 83 (268)
|||+..-
T Consensus 116 lDE~~~g 122 (222)
T cd03287 116 LDELGRG 122 (222)
T ss_pred EccCCCC
Confidence 9997543
No 384
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.42 E-value=0.07 Score=50.52 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=31.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChH
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNM 60 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~ 60 (268)
.||+.|.|||||+..|||...-+-=.+.++...+.|+
T Consensus 29 lFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds 65 (352)
T COG4148 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDA 65 (352)
T ss_pred EecCCCCChhhHHHHHhccCCccccEEEECCEEeecc
Confidence 7999999999999999999998888888887555443
No 385
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.41 E-value=0.21 Score=42.57 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.0
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
=|.+|+||||++..||..| |+.+..+.
T Consensus 9 eG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 9 EGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4889999999999999998 55665544
No 386
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.36 E-value=0.074 Score=42.59 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
..|+.|+|||+|+.+|+|.+..
T Consensus 16 i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEESTTSSHHHHHHHHTTSSHE
T ss_pred EEccCCCccccceeeecccccc
Confidence 4589999999999999998754
No 387
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.36 E-value=0.21 Score=47.95 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=31.7
Q ss_pred ccccCCCCHHHHHHHHHhh---------cCCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANF---------LNFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---------l~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.||++|||||.||+-+|-. ++-.+.+++.-. ..+.++|..+...+
T Consensus 131 I~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~-tF~peRl~~ia~~~ 184 (344)
T PLN03187 131 AFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG-TFRPDRIVPIAERF 184 (344)
T ss_pred EecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC-CCCHHHHHHHHHHc
Confidence 7999999999999877622 234677777755 44566666666554
No 388
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.36 E-value=0.16 Score=47.97 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=28.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
..|++|||||+++..||..||++. +++ -+.+++.+...
T Consensus 97 I~G~sgsGKStlA~~La~~l~~~~-vi~-------~D~~re~~R~~ 134 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRLGIRS-VIG-------TDSIREVMRKI 134 (301)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCE-EEe-------chHHHHHHHHh
Confidence 468999999999999999999873 333 24566555543
No 389
>PLN02796 D-glycerate 3-kinase
Probab=92.34 E-value=0.18 Score=48.65 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=32.3
Q ss_pred cccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHHHHHHH
Q 024362 25 HRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
-|+.|+|||||+.+|++.+. +.+..+++.+..++......+-.
T Consensus 106 ~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 106 SAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred ECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 47889999999999999985 45777777775566555555433
No 390
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.29 E-value=0.1 Score=44.10 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=18.9
Q ss_pred cccCCCCHHHHHHHHHhhcCC
Q 024362 25 HRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
-|++|+|||+|+.+||+.++.
T Consensus 7 ~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 7 VGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred ECCCCCCHHHHHHHHHHHcCc
Confidence 489999999999999998864
No 391
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=92.28 E-value=0.13 Score=44.74 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|++|+|||+++..++. +|+.++..+.
T Consensus 7 ltG~~gsGKst~~~~l~~-~g~~~i~~D~ 34 (194)
T PRK00081 7 LTGGIGSGKSTVANLFAE-LGAPVIDADA 34 (194)
T ss_pred EECCCCCCHHHHHHHHHH-cCCEEEEecH
Confidence 468999999999999998 8988777663
No 392
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.27 E-value=0.34 Score=39.21 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|.+|+|||||+.++.+.
T Consensus 4 iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 4 ILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEcCCCCCHHHHHHHHhcC
Confidence 3588999999999999876
No 393
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=92.25 E-value=0.11 Score=45.35 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+|||+++..++..+|+.++..+
T Consensus 6 itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 6 LTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 3589999999999999999898877544
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.25 E-value=0.33 Score=39.97 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=17.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 19 i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 19 ILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEccCCCCHHHHHHHHhcC
Confidence 5699999999999999996
No 395
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.16 Score=50.39 Aligned_cols=47 Identities=47% Similarity=0.645 Sum_probs=42.6
Q ss_pred hhhHHHHHHhhhcCCCChHHHHHHhhcCC-CHHHHHhhhHHHhhhhhh
Q 024362 131 HPFSLEIEELTEKVMVTPADVAERLMRSE-VPEVALRDLIDFLKNKKR 177 (268)
Q Consensus 131 ~~lf~~i~~~~~~~~~tpAei~~~l~~~~-d~~~al~~~~~~Lk~h~l 177 (268)
|+||.+|..++.+..+|||||++.||.+. |++.|++++++.+++++.
T Consensus 389 h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~ 436 (457)
T KOG0743|consen 389 HRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKE 436 (457)
T ss_pred cchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhh
Confidence 36899999999999999999999999975 899999999999988765
No 396
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.16 E-value=0.14 Score=46.75 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~ 54 (268)
++|+||||||+|+.-+|-. .|..+..+++-.
T Consensus 41 I~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 41 ITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 7899999999999876553 377888888864
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.16 E-value=0.25 Score=42.94 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=38.9
Q ss_pred ccccCCCCHHHHHHHHHh-h----cCCcE--------------EEEecccc--------ccChHHHHHHHHhcCCCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMAN-F----LNFDV--------------YDLELSAL--------LRGNMELRNLLIATENKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-~----l~~~i--------------y~l~ls~~--------~~~d~~L~~lf~~~p~~~Iil 76 (268)
..|+.|+|||+|..+||+ . .|..+ +.+..... ...-..+..++..+..+.+++
T Consensus 34 l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~lll 113 (202)
T cd03243 34 ITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVL 113 (202)
T ss_pred EECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEE
Confidence 468899999999999993 2 23222 11111110 011144566677778899999
Q ss_pred EeCCccchh
Q 024362 77 VEDIDCSIE 85 (268)
Q Consensus 77 iEDID~~~~ 85 (268)
+||.-+...
T Consensus 114 lDEp~~gld 122 (202)
T cd03243 114 IDELGRGTS 122 (202)
T ss_pred EecCCCCCC
Confidence 999876554
No 398
>PRK13973 thymidylate kinase; Provisional
Probab=92.14 E-value=0.24 Score=43.60 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=31.2
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
|..|+||||++..||.+| |+.++...-+........++.++.
T Consensus 10 G~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 10 GGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc
Confidence 778999999999999999 988888765542233445555544
No 399
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.12 E-value=0.11 Score=52.58 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.-|.+|+||||+...||..||+++++++-
T Consensus 11 LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 11 IIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 34889999999999999999999999874
No 400
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.11 E-value=0.57 Score=44.51 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=40.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC---------------------cEEEEe--ccc------cccChHHHHHHHHhc---C-
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF---------------------DVYDLE--LSA------LLRGNMELRNLLIAT---E- 70 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~---------------------~iy~l~--ls~------~~~~d~~L~~lf~~~---p- 70 (268)
|+|+.|+||++++.++|..+.. |++.+. -.. ....=+.++.+...+ |
T Consensus 31 f~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~ 110 (319)
T PRK08769 31 ICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQ 110 (319)
T ss_pred eECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcc
Confidence 8999999999999999987743 344442 111 012235566666544 2
Q ss_pred --CCeeEEEeCCccchh
Q 024362 71 --NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 --~~~IiliEDID~~~~ 85 (268)
.+-|++||+.|....
T Consensus 111 ~g~~kV~iI~~ae~m~~ 127 (319)
T PRK08769 111 YGIAQVVIVDPADAINR 127 (319)
T ss_pred cCCcEEEEeccHhhhCH
Confidence 245888898888753
No 401
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.11 E-value=0.34 Score=41.64 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
-|..+|+||||++.++|-.. |+.+..+..-
T Consensus 7 vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFl 39 (159)
T cd00561 7 VYTGNGKGKTTAALGLALRALGHGYRVGVVQFL 39 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 57888999999999887543 8899996643
No 402
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.09 E-value=0.38 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
|+|++|+||++|+.++|..+..
T Consensus 26 f~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 26 LHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred EECCCCCCHHHHHHHHHHHHcC
Confidence 7999999999999999998855
No 403
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.09 E-value=0.14 Score=45.37 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.8
Q ss_pred cc-ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FH-RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y-~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
|+ |-.|.|||+++.||+..| |+.+|.|+...
T Consensus 27 W~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 27 WFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred EeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 77 678999999999999988 99999987644
No 404
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.08 E-value=0.094 Score=45.30 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.5
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|++|+|||+|+.+|+..|+
T Consensus 5 ~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 5 AGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EESTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 37899999999999999997
No 405
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.02 E-value=0.17 Score=47.17 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
..+++++..-..... .-|++|+|||||+.+++..+ |+.+..+++.
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 345666543223322 45899999999999999877 7777777654
No 406
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.00 E-value=0.38 Score=39.22 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=16.2
Q ss_pred cccCCCCHHHHHHHHHhhc
Q 024362 25 HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l 43 (268)
-|++|+|||||+.++.+.+
T Consensus 5 vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EecCCCCHHHHHHHHhhhc
Confidence 4789999999999998653
No 407
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.00 E-value=0.12 Score=51.67 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.4
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
-|.+||||||++..||..+|++++..+-
T Consensus 6 ~G~~GsGKSTv~~~La~~lg~~~id~D~ 33 (488)
T PRK13951 6 VGMMGSGKSTIGKRVSEVLDLQFIDMDE 33 (488)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEECcH
Confidence 4789999999999999999999998763
No 408
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.98 E-value=0.16 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
++|+||||||+++.++|..+..
T Consensus 55 ~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 55 MIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred EECCCCCcHHHHHHHHHHHcCh
Confidence 7899999999999999999864
No 409
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.92 E-value=0.28 Score=44.31 Aligned_cols=43 Identities=14% Similarity=-0.028 Sum_probs=32.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.||+||||||+|+.-.+... |.+++.+++.. +...|...+.+.
T Consensus 28 I~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e---~~~~l~~~~~~~ 73 (260)
T COG0467 28 ITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE---SPEELLENARSF 73 (260)
T ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC---CHHHHHHHHHHc
Confidence 68999999999987665443 78899999875 566676666654
No 410
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.91 E-value=0.12 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.3
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
..|++|+|||+|+.+|++.+.
T Consensus 10 i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 10 LSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EECCCCCCHHHHHHHHHhhCc
Confidence 569999999999999999986
No 411
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.91 E-value=0.29 Score=47.47 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=42.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC------------CCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE------------NKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p------------~~~IiliEDID~~ 83 (268)
-+++.|||||+|...||+..+.++++.-+-. ..-.+..+++..+| .|+|++.--=|..
T Consensus 162 I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iG--ERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p 231 (369)
T cd01134 162 IPGPFGCGKTVIQQSLSKYSNSDIVIYVGCG--ERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMP 231 (369)
T ss_pred EECCCCCChHHHHHHHHhCCCCCEEEEEEeC--CChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCC
Confidence 5788999999999999999998887655543 44455666666543 3777776665554
No 412
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=91.87 E-value=0.24 Score=43.79 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCcc-------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccc
Q 024362 11 IMDDLEMFLKRKD-------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCS 83 (268)
Q Consensus 11 i~~Di~~Fl~~~~-------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~ 83 (268)
++.=+...+.|.. +.|+-|+||||++..|+.. .|.=++.. ..+.+.+. .+....||.|||+++.
T Consensus 37 l~~~Var~~~pg~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~-~~~kd~~~----~l~~~~iveldEl~~~ 107 (198)
T PF05272_consen 37 LVGAVARAYEPGCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND-FDDKDFLE----QLQGKWIVELDELDGL 107 (198)
T ss_pred HHHHHHHHhCCCCcCceeeeEecCCcccHHHHHHHHhHH----hccCcccc-CCCcHHHH----HHHHhHheeHHHHhhc
Confidence 3444444455532 5678889999999999666 22222222 22233333 3455579999999987
Q ss_pred h
Q 024362 84 I 84 (268)
Q Consensus 84 ~ 84 (268)
.
T Consensus 108 ~ 108 (198)
T PF05272_consen 108 S 108 (198)
T ss_pred c
Confidence 5
No 413
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.85 E-value=0.096 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=18.0
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.+|+||||||.++.++++.|
T Consensus 27 l~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 27 LIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp EES-CCCTHHHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999987
No 414
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=91.82 E-value=0.23 Score=48.78 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCc--c----ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeC
Q 024362 10 MIMDDLEMFLKRK--D----FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVED 79 (268)
Q Consensus 10 ~i~~Di~~Fl~~~--~----~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliED 79 (268)
..+..++.||++. . +||||+||||.|+..|-..|+=.|....-+. + +--++-+..--|.||||
T Consensus 247 ~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~-----S--hFWLqPL~d~Ki~llDD 315 (432)
T PF00519_consen 247 SFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK-----S--HFWLQPLADAKIALLDD 315 (432)
T ss_dssp HHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTT-----S--CGGGGGGCT-SSEEEEE
T ss_pred HHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCC-----C--cccccchhcCcEEEEcC
Confidence 4678899999874 2 8999999999999999999987755421111 1 11223344455788888
No 415
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.78 E-value=0.2 Score=46.44 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=42.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcE-EEEeccccccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDV-YDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~i-y~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
+|+..++|||+++.+.|+.+|-+- +. .++..|+..|....... +...++|||+..+-
T Consensus 198 l~G~Ss~GKTt~~~~a~Sv~G~p~~l~---~sw~~T~n~le~~a~~~-nd~~l~lDE~~~~~ 255 (286)
T PF06048_consen 198 LYGQSSSGKTTALQLAASVWGNPDGLI---RSWNSTDNGLERTAAAH-NDLPLVLDELSQAD 255 (286)
T ss_pred EEeCCCCCHHHHHHHhhhhCcCchhhh---hcchhhHHHHHHHHHHc-CCcceEehhccccc
Confidence 789999999999999999999987 22 22345666666554444 47789999997654
No 416
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.75 E-value=0.57 Score=48.97 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCc-c-ccccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 9 KMIMDDLEMFLKRK-D-FHRRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~-~-~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
..|+.-+..-.+.+ . ..+|.|.||||++...+...+ ++.-++|..
T Consensus 20 ~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~ 66 (903)
T PRK04841 20 ERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDE 66 (903)
T ss_pred hHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCc
Confidence 44555555433222 1 679999999999999888777 777777754
No 417
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.75 E-value=0.43 Score=43.62 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=17.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.+|.+.
T Consensus 36 lvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 36 VLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 7899999999999999985
No 418
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.72 E-value=0.12 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=20.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
..|++|+|||||+.+|++.+....
T Consensus 6 l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred EECCCCCCHHHHHHHHHccCcccc
Confidence 468999999999999999875533
No 419
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.70 E-value=0.17 Score=43.86 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.2
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
+-|.+|+|||+|+.+|++.+ |...+.++.
T Consensus 29 i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~ 60 (198)
T PRK03846 29 FTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60 (198)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 45789999999999999987 455666653
No 420
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.69 E-value=0.55 Score=43.50 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=42.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccCh----HHHHHHHHhc---CCCeeEEEeCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGN----MELRNLLIAT---ENKSLLVVEDI 80 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d----~~L~~lf~~~---p~~~IiliEDI 80 (268)
.-|..||||+|+++-.|-..+++++.+.++. ..+- ++|+.++..+ ..+++++|+|=
T Consensus 36 LvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~-~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 36 LVGVGGSGRQSLARLAAFICGYEVFQIEITK-GYSIKDFKEDLKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp EECTTTSCHHHHHHHHHHHTTEEEE-TTTST-TTHHHHHHHHHHHHHHHHHCS-S-EEEEEECC
T ss_pred EecCCCccHHHHHHHHHHHhccceEEEEeeC-CcCHHHHHHHHHHHHHHHhccCCCeEEEecCc
Confidence 6788999999999988888899999999887 4333 5677777654 35889999983
No 421
>PLN02674 adenylate kinase
Probab=91.68 E-value=0.23 Score=45.55 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCc-----c--ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 7 VKKMIMDDLEMFLKRK-----D--FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~-----~--~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
=+..++.++-.++... . ..|+||+|||+++..||..+|+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 12 PSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred chHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 3455666776666521 1 5799999999999999999986543
No 422
>PTZ00035 Rad51 protein; Provisional
Probab=91.67 E-value=0.41 Score=45.67 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHhhcCc-------cccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHhc
Q 024362 13 DDLEMFLKRK-------DFHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 13 ~Di~~Fl~~~-------~~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
..++..|.+. ..||++|||||+|+..+|... +-.+.+++... ..+...+..++...
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~-~f~~eri~~ia~~~ 176 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG-TFRPERIVQIAERF 176 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC-CCCHHHHHHHHHHh
Confidence 3456666542 278999999999999887533 34566667654 34566677776654
No 423
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.66 E-value=0.19 Score=43.11 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.5
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
|-+|+|||+|+.+|...| |.++|.|+...
T Consensus 9 GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 9 GLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 678999999999999988 89999997543
No 424
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=91.65 E-value=0.34 Score=39.12 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++++.
T Consensus 5 ~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 5 SMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4589999999999999874
No 425
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.59 E-value=0.11 Score=40.51 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.+|.+.
T Consensus 4 iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEESTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 4689999999999999974
No 426
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=91.58 E-value=0.29 Score=48.60 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=35.5
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcC
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATE 70 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p 70 (268)
=|+.|+|||||+.+|++.+ ++.+..|++.+..++......+-..-|
T Consensus 218 sG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP 266 (460)
T PLN03046 218 SAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNP 266 (460)
T ss_pred ECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCc
Confidence 3788999999999999988 456888888886677777666554433
No 427
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=91.58 E-value=0.16 Score=44.70 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=23.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|+|||+++..+++ +|+.++..+
T Consensus 10 itG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 10 VTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred EECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 468999999999999997 888888765
No 428
>PRK07667 uridine kinase; Provisional
Probab=91.58 E-value=0.2 Score=43.47 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.-|.+|+|||+++..|+..+ |.++..+++.+
T Consensus 22 I~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 22 IDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 45899999999999999987 45777777766
No 429
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.49 E-value=0.15 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDV 47 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~i 47 (268)
..|.+|||||||+.+||..+|...
T Consensus 224 I~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 224 ILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCe
Confidence 458889999999999999998874
No 430
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.47 E-value=0.36 Score=45.81 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=17.1
Q ss_pred ccCCCCHHHHHHHHHhhc
Q 024362 26 RRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l 43 (268)
|.||||||-|+..+|..+
T Consensus 8 G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 8 GGAGTGKTVLALNLAKEL 25 (352)
T ss_pred ecCCcCHHHHHHHHHHHh
Confidence 789999999999999998
No 431
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.46 E-value=0.17 Score=48.16 Aligned_cols=28 Identities=11% Similarity=-0.047 Sum_probs=19.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
.||++|||||+|+..++... |-.+..++
T Consensus 60 I~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 60 IYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 89999999999987655433 44454444
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.43 E-value=0.36 Score=43.35 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=21.6
Q ss_pred ccccCCCCHHHHHHH-HHhhc--CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAG-MANFL--NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~A-lA~~l--~~~iy~l~ls 53 (268)
.+|++|||||+|+.. +++.+ |..+..++..
T Consensus 29 i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 29 IEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 689999999999744 44432 6677777743
No 433
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.41 E-value=0.16 Score=47.93 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-||+|+|||+|+..||..++..|...
T Consensus 9 i~GptgsGKt~la~~la~~~~~~iis~ 35 (307)
T PRK00091 9 IVGPTASGKTALAIELAKRLNGEIISA 35 (307)
T ss_pred EECCCCcCHHHHHHHHHHhCCCcEEec
Confidence 358999999999999999998765544
No 434
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.41 E-value=0.34 Score=42.51 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=29.9
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccccccChHHHHHHHHhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSALLRGNMELRNLLIATE 70 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~~~~~d~~L~~lf~~~p 70 (268)
-+|+||||||+|+.-++-.. |-.++.+++.. +...+.+-+.++.
T Consensus 24 i~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee---~~~~l~~~~~s~g 71 (226)
T PF06745_consen 24 ISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE---PPEELIENMKSFG 71 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS----HHHHHHHHHTTT
T ss_pred EEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC---CHHHHHHHHHHcC
Confidence 47999999999998655332 88999999865 3456666666654
No 435
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=91.30 E-value=0.19 Score=47.15 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|++|+|||+|+..||..++..|+.++
T Consensus 5 ~G~t~~GKs~la~~l~~~~~~~iis~D 31 (287)
T TIGR00174 5 MGPTAVGKSQLAIQLAKKLNAEIISVD 31 (287)
T ss_pred ECCCCCCHHHHHHHHHHhCCCcEEEec
Confidence 489999999999999999998876654
No 436
>PRK05973 replicative DNA helicase; Provisional
Probab=91.27 E-value=0.35 Score=44.13 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=28.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
-+|+||+|||+|+.-+|-.. |..++++++-. +.+++..=+.
T Consensus 69 IaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe---s~~~i~~R~~ 112 (237)
T PRK05973 69 LGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY---TEQDVRDRLR 112 (237)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC---CHHHHHHHHH
Confidence 36899999999988765543 88888888754 3444443333
No 437
>PRK05439 pantothenate kinase; Provisional
Probab=91.21 E-value=0.58 Score=44.40 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCc----c----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHHHH
Q 024362 8 KKMIMDDLEMFLKRK----D----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNMELR 63 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~----~----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~L~ 63 (268)
...+-..+..|+... . --|++|+||||||..|+..++ ..+..+++-+....++.|.
T Consensus 67 ~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~ 135 (311)
T PRK05439 67 NQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLE 135 (311)
T ss_pred hHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHh
Confidence 344556677788622 1 348899999999999999774 3577888777555555553
No 438
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.19 E-value=0.13 Score=44.89 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4445543344444 348999999999999999864
No 439
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.96 E-value=0.65 Score=53.13 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhc-------CCcEEEEecccc--------ccChHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFL-------NFDVYDLELSAL--------LRGNMELR 63 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l-------~~~iy~l~ls~~--------~~~d~~L~ 63 (268)
|++++++.| ..++.+.+ +-|.+|||||+++.++...+ ++.|.-+-.+.. ++.-.++.
T Consensus 968 Lt~~Q~~Av----~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~ 1043 (1747)
T PRK13709 968 LTSGQRAAT----RMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLA 1043 (1747)
T ss_pred CCHHHHHHH----HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHH
Confidence 667777764 45565532 77999999999999887664 455666544431 34446677
Q ss_pred HHHHhc-----------CCCeeEEEeCCccch
Q 024362 64 NLLIAT-----------ENKSLLVVEDIDCSI 84 (268)
Q Consensus 64 ~lf~~~-----------p~~~IiliEDID~~~ 84 (268)
.+|... ..+.||+|||.--+.
T Consensus 1044 s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~ 1075 (1747)
T PRK13709 1044 SFLHDTQLQQRSGETPDFSNTLFLLDESSMVG 1075 (1747)
T ss_pred HHhcccccccccccCCCCCCcEEEEEcccccc
Confidence 776531 135799999955443
No 440
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.89 E-value=0.45 Score=42.05 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=35.7
Q ss_pred ccccCCCCHHHHHHHHHh-----hcCCcEEEE------------ecccc-ccC---------hHHHHHHHHhcCCCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMAN-----FLNFDVYDL------------ELSAL-LRG---------NMELRNLLIATENKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-----~l~~~iy~l------------~ls~~-~~~---------d~~L~~lf~~~p~~~Iil 76 (268)
..|+.|+|||++.+++++ ..|+.+... .+... ... -.++..++..+.+++++|
T Consensus 34 l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvl 113 (204)
T cd03282 34 ITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVL 113 (204)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEE
Confidence 568899999999999873 223322111 11000 000 024556666677899999
Q ss_pred EeCCccc
Q 024362 77 VEDIDCS 83 (268)
Q Consensus 77 iEDID~~ 83 (268)
|||+..-
T Consensus 114 lDE~~~g 120 (204)
T cd03282 114 IDELGRG 120 (204)
T ss_pred eccccCC
Confidence 9997543
No 441
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.86 E-value=0.18 Score=43.31 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.9
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcE
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDV 47 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~i 47 (268)
|+||+|||||+.-++..+ ++++
T Consensus 6 G~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 6 GPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp S-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CcCCCCHHHHHHHHHHHhhccCCcc
Confidence 789999999999999999 6665
No 442
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=90.84 E-value=0.37 Score=42.81 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=36.4
Q ss_pred ccccCCCCHHHHHHHHHh-----hcCCcEE-------EEe--cccc--------ccCh-----HHHHHHHHhcCCCeeEE
Q 024362 24 FHRRVGRGKSSLIAGMAN-----FLNFDVY-------DLE--LSAL--------LRGN-----MELRNLLIATENKSLLV 76 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-----~l~~~iy-------~l~--ls~~--------~~~d-----~~L~~lf~~~p~~~Iil 76 (268)
..|+.|+|||+|.+.+|+ ..|..+- .++ .+.. +++. ..+..++..+.+++++|
T Consensus 35 l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~lll 114 (216)
T cd03284 35 ITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVL 114 (216)
T ss_pred EECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEE
Confidence 568999999999999974 3343322 000 0000 1111 24667777788999999
Q ss_pred EeCC
Q 024362 77 VEDI 80 (268)
Q Consensus 77 iEDI 80 (268)
|||.
T Consensus 115 lDEp 118 (216)
T cd03284 115 LDEI 118 (216)
T ss_pred EecC
Confidence 9997
No 443
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=90.82 E-value=0.18 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.5
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
|++|+||||++..||..||+.+..
T Consensus 291 G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 291 GPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred CCCCCCHHHHHHHHHHHcCCeEec
Confidence 678899999999999999865443
No 444
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=90.70 E-value=0.27 Score=50.34 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=39.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc--EEEEeccccccChHHH------HHHHH-h----------cCCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD--VYDLELSALLRGNMEL------RNLLI-A----------TENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~--iy~l~ls~~~~~d~~L------~~lf~-~----------~p~~~IiliEDID~~~ 84 (268)
..|++|||||+|+.+|+..+... +..+.++ .+++.| ...+. . .....+++||||+.+.
T Consensus 21 l~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~---~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~ 97 (589)
T TIGR02031 21 IRARAGTGKTALARALAEILPPIMPFVELPLG---VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLD 97 (589)
T ss_pred EEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc---cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCC
Confidence 57999999999999999998764 6666642 222211 11111 1 1234699999999876
Q ss_pred h
Q 024362 85 E 85 (268)
Q Consensus 85 ~ 85 (268)
.
T Consensus 98 ~ 98 (589)
T TIGR02031 98 D 98 (589)
T ss_pred H
Confidence 5
No 445
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.67 E-value=0.22 Score=44.33 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
|.+|+|||+++..++. +|+++++.+
T Consensus 9 G~igsGKStva~~~~~-~G~~vidaD 33 (201)
T COG0237 9 GGIGSGKSTVAKILAE-LGFPVIDAD 33 (201)
T ss_pred cCCCCCHHHHHHHHHH-cCCeEEEcc
Confidence 6789999999999999 898888755
No 446
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.67 E-value=0.58 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=16.0
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
.+|++|+|||||+.++..
T Consensus 5 ~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 5 VVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 578999999999999975
No 447
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.66 E-value=0.15 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
|++++|+|||+++..+|..+
T Consensus 37 i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 37 IAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEECSTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999998876
No 448
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=90.65 E-value=0.39 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=34.9
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccch
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSI 84 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~ 84 (268)
||..|||||||+||-+.+|=....||.+. +.|.-=+.-+-..=.||+||+=...
T Consensus 162 GPvNsGKTTlAAAlLdL~gG~~LNvN~p~-----dkl~FELG~AiDQfmVvFEDVKGq~ 215 (417)
T PF06431_consen 162 GPVNSGKTTLAAALLDLCGGKSLNVNCPP-----DKLNFELGCAIDQFMVVFEDVKGQP 215 (417)
T ss_dssp -STTSSHHHHHHHHHHHH-EEEE-TSS-T-----TTHHHHHCCCTT-SEEEEEEE--SS
T ss_pred cCcCCchHHHHHHHHHhcCCceeecCCCh-----hhcchhhheeeceEEEEEEecCCCc
Confidence 66779999999999999886655555443 5565555555567789999987653
No 449
>PLN02459 probable adenylate kinase
Probab=90.63 E-value=0.21 Score=46.32 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
+.|+||+|||+++.-||..+|+..+.
T Consensus 34 ~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 34 FLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 46999999999999999999976554
No 450
>PRK14529 adenylate kinase; Provisional
Probab=90.59 E-value=0.17 Score=45.76 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
+.|+||+||||++..||..+++..+
T Consensus 5 l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 5 IFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4689999999999999999998765
No 451
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.59 E-value=0.26 Score=41.26 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=23.6
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
-|+.|+|||+++..++..+ |..++.++..
T Consensus 5 ~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 5 TGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred ECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 4789999999999999987 6677776644
No 452
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.56 E-value=0.26 Score=41.97 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=25.8
Q ss_pred hhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 18 FLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 18 Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
+.++.. +-|.+|+|||+++.+|++.+ |.+++.++.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 444443 45889999999999999997 455666553
No 453
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.52 E-value=0.16 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.3
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|+.|+|||||..+|||.+.
T Consensus 29 i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EECCCCCCHHHHHHHHhcCCC
Confidence 358999999999999999764
No 454
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.46 E-value=0.16 Score=43.99 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||||+.+|||.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred ECCCCCCHHHHHHHHhcCCC
Confidence 48899999999999999764
No 455
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.42 E-value=0.4 Score=47.55 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=39.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecccc-----------c--------cChHHHHHHHHhc--CCCeeEEEeC
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSAL-----------L--------RGNMELRNLLIAT--ENKSLLVVED 79 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~-----------~--------~~d~~L~~lf~~~--p~~~IiliED 79 (268)
.+|+||+|||+|+..+|..+ +..+++++.-+. + ..+..+..+...+ ..+.+|+||-
T Consensus 99 I~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVIDS 178 (454)
T TIGR00416 99 IGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVIDS 178 (454)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEec
Confidence 68999999999999987765 456777776331 0 1112233333333 2467899998
Q ss_pred Cccch
Q 024362 80 IDCSI 84 (268)
Q Consensus 80 ID~~~ 84 (268)
|-...
T Consensus 179 Iq~l~ 183 (454)
T TIGR00416 179 IQTLY 183 (454)
T ss_pred chhhc
Confidence 87654
No 456
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=90.37 E-value=0.54 Score=45.52 Aligned_cols=31 Identities=32% Similarity=0.421 Sum_probs=26.5
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~ 54 (268)
+.||+|+|||||+..|-..| .+++|.+..+-
T Consensus 93 L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~P 124 (358)
T PF08298_consen 93 LLGPVGGGKSSLAELLKRGLEEYPIYTLKGCP 124 (358)
T ss_pred EECCCCCCHHHHHHHHHHHhheEEEEEecCCc
Confidence 46999999999999998877 67999996554
No 457
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=90.35 E-value=0.17 Score=44.16 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
|..|||||++..|++..|+++++.-+
T Consensus 19 GvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 19 GVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred ecCCCChhhHHHHHHHHhCCcccccc
Confidence 78899999999999999999999865
No 458
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.31 E-value=0.17 Score=43.87 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||||..+|||.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 32 LGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 48899999999999999764
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.27 E-value=0.17 Score=43.89 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.8
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||||..+|||.+.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 31 LGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 48999999999999999764
No 460
>PLN02748 tRNA dimethylallyltransferase
Probab=90.24 E-value=0.2 Score=50.01 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|||||+|+..||..++..|+..+
T Consensus 27 i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 27 VMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred EECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 3589999999999999999997776655
No 461
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.23 E-value=1.2 Score=41.99 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHh-hcCcc-ccccCCCCHHHHHHHHHhhcCC----------------cEEEEecccc--ccChHHHHHH
Q 024362 6 DVKKMIMDDLEMF-LKRKD-FHRRVGRGKSSLIAGMANFLNF----------------DVYDLELSAL--LRGNMELRNL 65 (268)
Q Consensus 6 ~~K~~i~~Di~~F-l~~~~-~Y~~~GTGKTSl~~AlA~~l~~----------------~iy~l~ls~~--~~~d~~L~~l 65 (268)
...+.|.+-++.= +...- |+|+.|+||++++.++|..+.. |++.+..... ..+=+..+.+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 3444554444441 11121 7899999999999999998843 4555532211 2344566666
Q ss_pred HHhc---C---CCeeEEEeCCccchh
Q 024362 66 LIAT---E---NKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~---p---~~~IiliEDID~~~~ 85 (268)
...+ | ..-|++|++.|....
T Consensus 84 ~~~~~~~p~e~~~kv~ii~~ad~mt~ 109 (290)
T PRK05917 84 KKQIWIHPYESPYKIYIIHEADRMTL 109 (290)
T ss_pred HHHHhhCccCCCceEEEEechhhcCH
Confidence 6654 2 245889999998754
No 462
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=90.19 E-value=0.27 Score=45.58 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=29.4
Q ss_pred HHHHHHhhcCcc--ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 12 MDDLEMFLKRKD--FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 12 ~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
++++..++.++. +.|++|+|||||+.+|.+......-.+
T Consensus 152 i~~L~~~L~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v 192 (287)
T cd01854 152 LDELREYLKGKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192 (287)
T ss_pred HHHHHhhhccceEEEECCCCCCHHHHHHHHhchhhccccce
Confidence 355666777653 789999999999999999876554433
No 463
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.18 E-value=0.18 Score=43.71 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.4
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|+.|+|||+|..+|||.+.
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCC
Confidence 358999999999999999764
No 464
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.15 E-value=0.88 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.+|+.|+|||++.-||.-.++.
T Consensus 27 i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 27 IVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred EECCCCCCHHHHHHHHHHHcCc
Confidence 5799999999999998666543
No 465
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.14 E-value=0.18 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444433334443 358999999999999999874
No 466
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.13 E-value=0.14 Score=46.59 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcCC
Q 024362 10 MIMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++.|+. ++.+.+. -|+.|+|||||..+|+|.+.-
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4778887 6666654 489999999999999998753
No 467
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=90.12 E-value=0.32 Score=41.17 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.5
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
-|+.|+|||+|+.+|+..+ |+.+..+...
T Consensus 5 ~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 5 VGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4788999999999999976 7888888643
No 468
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.04 E-value=0.18 Score=43.05 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.++ -|+.|+|||||..+|+|.+.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455444445443 48999999999999999764
No 469
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.04 E-value=0.18 Score=43.73 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+. -|+.|+|||||..+|||.+.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55555544445443 48999999999999999764
No 470
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.01 E-value=0.19 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+..
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3444433334443 3589999999999999998643
No 471
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.99 E-value=0.21 Score=43.30 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444433334443 348999999999999999864
No 472
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=89.99 E-value=0.41 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.=|++|||||+|+..|-..+..
T Consensus 18 iIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred EECCCCCCHHHHHHHHHHhhcc
Confidence 4589999999999998877644
No 473
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.99 E-value=0.59 Score=46.30 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
++|++|+|||+++..||.+| |+.+..++...
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 67899999999999999888 67777776654
No 474
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.98 E-value=0.33 Score=43.00 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=25.9
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~ 54 (268)
.++++|||||+|+..++-. -|..++.+++..
T Consensus 30 i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 30 IEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred EECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 6899999999999998644 378899988854
No 475
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.96 E-value=0.43 Score=48.70 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCcc-------ccccCCCCHHHHHHHHHhhcCC----cEEEEec
Q 024362 9 KMIMDDLEMFLKRKD-------FHRRVGRGKSSLIAGMANFLNF----DVYDLEL 52 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~-------~Y~~~GTGKTSl~~AlA~~l~~----~iy~l~l 52 (268)
.++.+=|.++..++. +.|.+||||||++.+||..|+. +++.++.
T Consensus 375 peV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~ 429 (568)
T PRK05537 375 PEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG 429 (568)
T ss_pred HHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC
Confidence 445555556655542 3589999999999999999986 4555544
No 476
>PRK04296 thymidine kinase; Provisional
Probab=89.95 E-value=0.28 Score=42.53 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=23.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
++|++|+|||+++.-+|..+ |..++.+.
T Consensus 7 itG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 7 IYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57899999999998888766 77888774
No 477
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=89.92 E-value=0.2 Score=43.91 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=17.5
Q ss_pred cccCCCCHHHHHHHHHhhc
Q 024362 25 HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l 43 (268)
-|+.|+|||||..+|||.+
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 4889999999999999987
No 478
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=89.89 E-value=0.24 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~ 54 (268)
.-|+||+|||+++..+...+ +-++..|+...
T Consensus 20 ~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~ 51 (199)
T PF06414_consen 20 IAGQPGSGKSTLARQLLEEFGGGGIVVIDADE 51 (199)
T ss_dssp EES-TTSTTHHHHHHHHHHT-TT-SEEE-GGG
T ss_pred EeCCCCCCHHHHHHHhhhhccCCCeEEEehHH
Confidence 34999999999999999998 77777777655
No 479
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.88 E-value=0.2 Score=42.64 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.8
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||+|+.+|||.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred ECCCCCCHHHHHHHHhCCCC
Confidence 48899999999999999864
No 480
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=89.86 E-value=0.9 Score=51.64 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhc-------CCcEEEEecccc--------ccChHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFL-------NFDVYDLELSAL--------LRGNMELR 63 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l-------~~~iy~l~ls~~--------~~~d~~L~ 63 (268)
|.+++++.+ ..+|.+.. +-|.+|||||+++.++...+ ++.|.-+-.+.. +..-..+.
T Consensus 836 Lt~~Qr~Av----~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TIa 911 (1623)
T PRK14712 836 LTSGQRAAT----RMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLA 911 (1623)
T ss_pred cCHHHHHHH----HHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhHH
Confidence 667777764 45565432 67999999999977765432 456665544332 34446677
Q ss_pred HHHHhc-----------CCCeeEEEeCCccc
Q 024362 64 NLLIAT-----------ENKSLLVVEDIDCS 83 (268)
Q Consensus 64 ~lf~~~-----------p~~~IiliEDID~~ 83 (268)
.+|... .+..||||||---+
T Consensus 912 sfL~~~~~~~~~~~~~~~~~~llIVDEASMV 942 (1623)
T PRK14712 912 SFLHDTQLQQRSGETPDFSNTLFLLDESSMV 942 (1623)
T ss_pred HHhccccchhhcccCCCCCCcEEEEEccccc
Confidence 777631 13579999994433
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.83 E-value=0.32 Score=42.69 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls 53 (268)
+++++|||||+|+..+|.. -|-.+..+++.
T Consensus 25 i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 25 VTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred EECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 7899999999999876642 25567777763
No 482
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=89.81 E-value=0.19 Score=44.44 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCccc---cccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKDF---HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~~---Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++|+.-=+.+.+. -|+.|+|||||..+|||.+.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45555444444443 48899999999999999864
No 483
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=89.81 E-value=1.9 Score=41.09 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhc----------------------CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFL----------------------NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l----------------------~~~iy~l~ls~ 54 (268)
|++.....|+.-+..+-.... ..|.+|+||||++.+|-+.. |..+..+|...
T Consensus 16 ~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPG 95 (313)
T TIGR00991 16 FPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPG 95 (313)
T ss_pred CCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCC
Confidence 455666666665555444331 57999999999999988742 22444555443
Q ss_pred cccChH-----H----HHHHHHhcCCCeeEEEeCCccc
Q 024362 55 LLRGNM-----E----LRNLLIATENKSLLVVEDIDCS 83 (268)
Q Consensus 55 ~~~~d~-----~----L~~lf~~~p~~~IiliEDID~~ 83 (268)
+.+. . ++..+...+.++|++++.+|..
T Consensus 96 --L~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~ 131 (313)
T TIGR00991 96 --LIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY 131 (313)
T ss_pred --CCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc
Confidence 3221 1 2222223357889999988864
No 484
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.80 E-value=0.19 Score=44.20 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++|+.-=+.+.+ ..|+.|+|||+|+.+|||.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444443344444 458999999999999999864
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=89.79 E-value=0.2 Score=43.70 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.--+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444444444444 348999999999999999764
No 486
>PRK13768 GTPase; Provisional
Probab=89.78 E-value=0.32 Score=44.29 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=24.6
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
-|+.|+||||++..+|..+ |.++..+++..
T Consensus 8 ~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 8 LGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred ECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4788999999998888766 67888888754
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.75 E-value=0.2 Score=44.32 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.4
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|+.|+|||||..+|||.+.
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EECCCCCCHHHHHHHHhCCCC
Confidence 358999999999999999874
No 488
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.75 E-value=0.38 Score=38.85 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=25.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
..++.|+|||+++..+|..+ +.++..++..
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 46789999999999999887 7788877743
No 489
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.75 E-value=0.2 Score=44.26 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3444433334433 358999999999999999864
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.74 E-value=0.91 Score=42.62 Aligned_cols=53 Identities=25% Similarity=0.176 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCc---c-----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHHH
Q 024362 10 MIMDDLEMFLKRK---D-----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNMEL 62 (268)
Q Consensus 10 ~i~~Di~~Fl~~~---~-----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~L 62 (268)
.+-.-...|+... . .-|++|+|||||+..|++.+. -.+..+++.....+.+.+
T Consensus 45 ~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l 110 (290)
T TIGR00554 45 RRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVL 110 (290)
T ss_pred hHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHH
Confidence 3444555677543 1 458999999999999988874 246666666533443433
No 491
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=89.67 E-value=0.87 Score=38.24 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCcc--ccccCCCCHHHHHHHHHh
Q 024362 11 IMDDLEMFLKRKD--FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 11 i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~ 41 (268)
++++|--...+.. ..|++|+|||||+.++.+
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555543333332 679999999999999987
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.60 E-value=0.29 Score=40.32 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|++|+|||||+.+|+..+...
T Consensus 5 ~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred ECCCCCCHHHHHHHHHhcCCcc
Confidence 4899999999999999987544
No 493
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=89.60 E-value=0.28 Score=43.38 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.8
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
|.-|+||||++..||..++..++.
T Consensus 6 G~~GsGKSTl~~~L~~~l~~~~~~ 29 (219)
T cd02030 6 GNIASGKGKLAKELAEKLGMKYFP 29 (219)
T ss_pred cCCCCCHHHHHHHHHHHhCCCeee
Confidence 678999999999999999876553
No 494
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=89.59 E-value=0.62 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.9
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 5 ~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 358899999999999986
No 495
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.58 E-value=0.21 Score=43.72 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+++++.-=+.+.+ .-|+.|+|||||..+|||.+.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444433344444 348999999999999999764
No 496
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=89.57 E-value=0.51 Score=45.26 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=32.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.||+||+|||.|+.-+|-.. +-.++.++.-. ..+.++|.++...+
T Consensus 128 i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~-~f~~eRl~qia~~~ 181 (342)
T PLN03186 128 IYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG-TFRPQRLIQIAERF 181 (342)
T ss_pred EECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC-CccHHHHHHHHHHc
Confidence 79999999999999777322 22677888766 45667777776654
No 497
>PRK13808 adenylate kinase; Provisional
Probab=89.56 E-value=0.26 Score=47.20 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
++|+||+|||+++.-||..||+..+.+
T Consensus 5 v~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 5 LLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecc
Confidence 579999999999999999999866654
No 498
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=89.56 E-value=0.51 Score=44.59 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=31.1
Q ss_pred ccccCCCCHHHHHHHHHhhcC---------CcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---------FDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---------~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.||++|+|||+|+..+|.... -.++.++... ..+...+..+....
T Consensus 101 i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~-~f~~~Rl~~ia~~~ 154 (316)
T TIGR02239 101 IFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG-TFRPERLLAIAERY 154 (316)
T ss_pred EECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC-CCCHHHHHHHHHHc
Confidence 689999999999998886321 2556677655 34555676666554
No 499
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.55 E-value=0.22 Score=46.16 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=24.3
Q ss_pred HHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 12 MDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 12 ~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
++|+.--+.+.+ .-||.|+|||||.+|||+.+..
T Consensus 18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 344443334433 3589999999999999998874
No 500
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=89.54 E-value=0.23 Score=37.95 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.4
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.|++|+|||||+.++.+...
T Consensus 2 iG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCc
Confidence 48899999999999988655
Done!