Query 024362
Match_columns 268
No_of_seqs 214 out of 1258
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_M 26S protease regulatory 99.7 3.3E-18 1.1E-22 165.3 10.9 149 2-155 184-395 (434)
2 4b4t_J 26S protease regulatory 99.7 4.4E-18 1.5E-22 163.1 11.0 148 5-155 154-362 (405)
3 4b4t_I 26S protease regulatory 99.7 8.2E-18 2.8E-22 162.4 10.5 146 5-155 188-396 (437)
4 4b4t_L 26S protease subunit RP 99.7 1E-17 3.5E-22 161.9 10.5 81 5-85 187-288 (437)
5 4b4t_K 26S protease regulatory 99.7 1.7E-17 5.9E-22 160.0 9.7 81 5-85 178-279 (428)
6 4b4t_H 26S protease regulatory 99.7 3.2E-17 1.1E-21 159.5 11.1 146 5-155 215-423 (467)
7 3cf2_A TER ATPase, transitiona 99.5 6.6E-15 2.3E-19 151.5 7.7 148 4-156 482-692 (806)
8 3cf2_A TER ATPase, transitiona 99.4 1.5E-13 5E-18 141.6 9.4 145 6-155 211-415 (806)
9 2x8a_A Nuclear valosin-contain 99.3 5.5E-12 1.9E-16 113.8 11.1 81 5-85 16-117 (274)
10 3cf0_A Transitional endoplasmi 99.3 1E-10 3.6E-15 105.9 16.4 82 4-85 20-122 (301)
11 3t15_A Ribulose bisphosphate c 99.3 2.3E-12 7.8E-17 116.9 4.5 62 24-85 41-113 (293)
12 2qz4_A Paraplegin; AAA+, SPG7, 99.2 5.9E-11 2E-15 103.2 11.0 82 4-85 11-112 (262)
13 2ce7_A Cell division protein F 99.2 7.2E-11 2.5E-15 115.1 10.7 81 4-85 21-122 (476)
14 1lv7_A FTSH; alpha/beta domain 99.1 3.9E-10 1.3E-14 98.9 12.2 83 2-85 15-118 (257)
15 3h4m_A Proteasome-activating n 99.1 2.3E-10 7.8E-15 101.3 10.7 82 4-85 22-124 (285)
16 2c9o_A RUVB-like 1; hexameric 99.1 1.3E-10 4.6E-15 111.3 9.0 82 4-85 42-140 (456)
17 2dhr_A FTSH; AAA+ protein, hex 99.0 1.8E-09 6E-14 105.9 11.7 81 4-85 36-137 (499)
18 3vfd_A Spastin; ATPase, microt 99.0 3.3E-08 1.1E-12 92.4 18.6 83 3-85 119-221 (389)
19 3hu3_A Transitional endoplasmi 99.0 2.1E-09 7E-14 104.9 10.6 81 5-85 210-311 (489)
20 2r62_A Cell division protease 99.0 4.3E-10 1.5E-14 98.8 5.1 62 24-85 49-117 (268)
21 1ixz_A ATP-dependent metallopr 98.9 9.6E-09 3.3E-13 89.8 11.2 62 24-85 54-122 (254)
22 1xwi_A SKD1 protein; VPS4B, AA 98.9 7.4E-09 2.5E-13 95.0 10.8 82 4-85 17-119 (322)
23 3eie_A Vacuolar protein sortin 98.9 3.5E-09 1.2E-13 96.6 7.9 84 2-85 21-124 (322)
24 1ypw_A Transitional endoplasmi 98.8 5.1E-10 1.8E-14 115.0 1.1 62 24-85 516-584 (806)
25 2qp9_X Vacuolar protein sortin 98.8 6E-09 2.1E-13 96.9 7.2 81 5-85 57-157 (355)
26 3pfi_A Holliday junction ATP-d 98.8 2.7E-08 9.3E-13 90.1 10.4 81 4-85 34-120 (338)
27 1iy2_A ATP-dependent metallopr 98.8 2.8E-08 9.6E-13 88.4 9.7 62 24-85 78-146 (278)
28 3b9p_A CG5977-PA, isoform A; A 98.7 2.6E-08 8.9E-13 88.6 9.1 82 4-85 26-127 (297)
29 3d8b_A Fidgetin-like protein 1 98.7 3.4E-08 1.2E-12 91.6 8.9 82 4-85 89-190 (357)
30 1hqc_A RUVB; extended AAA-ATPa 98.7 3.8E-08 1.3E-12 88.1 8.3 81 4-85 17-104 (324)
31 2zan_A Vacuolar protein sortin 98.7 3.8E-08 1.3E-12 94.3 8.1 82 4-85 139-241 (444)
32 3u61_B DNA polymerase accessor 98.7 3.8E-08 1.3E-12 88.8 7.6 72 11-84 34-118 (324)
33 3hws_A ATP-dependent CLP prote 98.7 2.8E-08 9.7E-13 91.7 6.7 62 24-85 56-130 (363)
34 1jbk_A CLPB protein; beta barr 98.6 7.7E-08 2.6E-12 77.8 7.6 76 10-85 29-129 (195)
35 3syl_A Protein CBBX; photosynt 98.6 8.4E-08 2.9E-12 85.5 7.7 82 3-85 35-144 (309)
36 3co5_A Putative two-component 98.6 3.2E-08 1.1E-12 80.0 4.4 77 5-85 10-89 (143)
37 1sxj_A Activator 1 95 kDa subu 98.6 1.1E-07 3.6E-12 92.6 8.8 83 2-85 42-162 (516)
38 1in4_A RUVB, holliday junction 98.6 1.1E-07 3.8E-12 87.2 8.3 75 10-85 32-116 (334)
39 1ofh_A ATP-dependent HSL prote 98.6 1.3E-07 4.6E-12 83.6 8.3 62 24-85 55-130 (310)
40 3n70_A Transport activator; si 98.5 1.4E-07 4.8E-12 76.3 7.0 77 6-85 8-90 (145)
41 2chg_A Replication factor C sm 98.5 2.4E-07 8.3E-12 76.6 8.5 75 10-85 24-116 (226)
42 1d2n_A N-ethylmaleimide-sensit 98.5 9.8E-08 3.3E-12 84.3 5.7 61 24-84 69-137 (272)
43 2p65_A Hypothetical protein PF 98.5 1.4E-07 4.9E-12 76.5 5.2 75 11-85 30-129 (187)
44 3pvs_A Replication-associated 98.5 2.1E-07 7.3E-12 89.6 7.2 60 24-85 55-120 (447)
45 1um8_A ATP-dependent CLP prote 98.4 3.2E-07 1.1E-11 84.9 7.4 62 24-85 77-151 (376)
46 1sxj_C Activator 1 40 kDa subu 98.4 4.1E-06 1.4E-10 76.4 14.3 76 9-85 31-124 (340)
47 3bos_A Putative DNA replicatio 98.4 1.3E-07 4.5E-12 80.0 4.0 74 9-85 37-118 (242)
48 3te6_A Regulatory protein SIR3 98.4 5.4E-07 1.8E-11 83.6 8.1 78 7-84 28-145 (318)
49 3ec2_A DNA replication protein 98.4 1.2E-07 4.1E-12 78.6 3.3 78 7-84 18-113 (180)
50 2w58_A DNAI, primosome compone 98.4 1.8E-07 6.1E-12 78.6 3.7 77 8-84 34-128 (202)
51 1njg_A DNA polymerase III subu 98.4 1.4E-06 4.7E-11 72.5 8.9 60 24-84 50-139 (250)
52 2bjv_A PSP operon transcriptio 98.3 1.6E-06 5.6E-11 75.9 9.4 79 5-85 12-114 (265)
53 1g41_A Heat shock protein HSLU 98.3 2.2E-07 7.7E-12 89.9 4.1 60 24-85 55-121 (444)
54 2v1u_A Cell division control p 98.3 8.4E-07 2.9E-11 80.3 7.2 62 24-85 49-144 (387)
55 2qby_B CDC6 homolog 3, cell di 98.3 1.2E-06 4.3E-11 79.7 8.1 81 5-85 26-147 (384)
56 4fcw_A Chaperone protein CLPB; 98.2 2.5E-06 8.5E-11 75.8 8.5 79 5-85 23-133 (311)
57 1l8q_A Chromosomal replication 98.2 3.7E-07 1.3E-11 82.5 2.9 61 24-85 42-112 (324)
58 2chq_A Replication factor C sm 98.2 7.1E-07 2.4E-11 79.0 4.5 75 10-85 24-116 (319)
59 1ypw_A Transitional endoplasmi 98.2 9.9E-07 3.4E-11 90.6 5.5 81 5-85 210-311 (806)
60 1sxj_B Activator 1 37 kDa subu 98.2 1.3E-06 4.5E-11 77.4 5.7 75 10-85 28-121 (323)
61 1fnn_A CDC6P, cell division co 98.2 6.6E-06 2.3E-10 74.7 9.9 78 5-83 23-137 (389)
62 2qby_A CDC6 homolog 1, cell di 98.2 1.5E-06 5.2E-11 78.4 5.4 62 24-85 50-142 (386)
63 1sxj_D Activator 1 41 kDa subu 98.2 1.1E-06 3.6E-11 79.3 4.3 74 11-85 45-147 (353)
64 1tue_A Replication protein E1; 98.2 1E-06 3.6E-11 77.6 4.1 68 10-84 43-116 (212)
65 1r6b_X CLPA protein; AAA+, N-t 98.2 5.9E-06 2E-10 83.4 10.0 79 5-85 464-571 (758)
66 1jr3_A DNA polymerase III subu 98.1 3.1E-06 1.1E-10 76.8 7.1 61 24-85 43-133 (373)
67 2r44_A Uncharacterized protein 98.1 9.6E-07 3.3E-11 79.9 3.5 61 24-85 51-123 (331)
68 1qvr_A CLPB protein; coiled co 98.1 3.3E-06 1.1E-10 86.8 7.7 76 10-85 177-277 (854)
69 1iqp_A RFCS; clamp loader, ext 98.1 1.9E-06 6.5E-11 76.5 5.0 75 10-85 32-124 (327)
70 2qgz_A Helicase loader, putati 98.1 1.1E-06 3.8E-11 80.3 3.5 76 8-83 133-226 (308)
71 3uk6_A RUVB-like 2; hexameric 98.1 2.9E-06 9.9E-11 77.3 6.0 28 24-51 75-104 (368)
72 2z4s_A Chromosomal replication 98.1 1.5E-06 5E-11 83.2 3.5 61 24-85 135-208 (440)
73 1r6b_X CLPA protein; AAA+, N-t 98.0 8.6E-06 3E-10 82.2 8.3 75 11-85 194-292 (758)
74 1a5t_A Delta prime, HOLB; zinc 98.0 1.5E-05 5.2E-10 73.0 9.1 203 11-222 10-258 (334)
75 2gno_A DNA polymerase III, gam 98.0 9E-06 3.1E-10 74.4 7.1 76 10-85 4-96 (305)
76 3m6a_A ATP-dependent protease 98.0 5.6E-06 1.9E-10 81.3 5.9 61 24-85 113-189 (543)
77 3pxi_A Negative regulator of g 98.0 1.6E-05 5.4E-10 80.5 8.7 80 5-85 497-593 (758)
78 2kjq_A DNAA-related protein; s 98.0 5.9E-06 2E-10 67.7 4.5 54 24-85 41-97 (149)
79 1ojl_A Transcriptional regulat 97.9 2.4E-05 8.3E-10 71.0 8.6 79 5-85 8-110 (304)
80 1sxj_E Activator 1 40 kDa subu 97.8 3.7E-05 1.2E-09 69.6 7.8 35 9-43 20-60 (354)
81 1w5s_A Origin recognition comp 97.8 4.4E-05 1.5E-09 69.9 7.8 60 25-84 58-151 (412)
82 1qvr_A CLPB protein; coiled co 97.7 5.3E-05 1.8E-09 77.9 7.9 80 4-85 563-674 (854)
83 2fna_A Conserved hypothetical 97.7 0.00011 3.6E-09 65.5 8.7 45 9-54 19-65 (357)
84 3pxg_A Negative regulator of g 97.7 2.6E-05 8.9E-10 75.0 4.9 68 11-78 188-274 (468)
85 1svm_A Large T antigen; AAA+ f 97.7 5.3E-05 1.8E-09 71.6 6.5 70 11-85 158-230 (377)
86 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 5.7E-05 1.9E-09 73.9 5.8 60 24-85 46-123 (500)
87 1u0j_A DNA replication protein 97.6 7E-05 2.4E-09 68.0 5.8 67 10-84 88-161 (267)
88 3pxi_A Negative regulator of g 97.6 4.8E-05 1.6E-09 77.0 4.9 69 10-78 187-274 (758)
89 1g8p_A Magnesium-chelatase 38 97.5 6.9E-05 2.3E-09 67.4 4.4 21 24-44 50-70 (350)
90 4akg_A Glutathione S-transfera 97.5 0.00014 4.7E-09 83.2 7.4 61 24-85 1272-1350(2695)
91 2qen_A Walker-type ATPase; unk 97.4 0.0002 6.9E-09 63.6 5.8 43 9-53 18-63 (350)
92 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00019 6.3E-09 67.1 3.2 62 24-85 128-196 (331)
93 4akg_A Glutathione S-transfera 97.1 0.00031 1.1E-08 80.4 5.5 61 24-85 650-711 (2695)
94 3k1j_A LON protease, ATP-depen 97.0 0.00057 1.9E-08 67.6 5.6 38 9-46 47-87 (604)
95 3f9v_A Minichromosome maintena 97.0 4.8E-05 1.7E-09 75.6 -2.9 62 24-85 332-405 (595)
96 3kb2_A SPBC2 prophage-derived 96.7 0.002 6.9E-08 51.5 5.1 28 25-52 7-34 (173)
97 2r2a_A Uncharacterized protein 96.5 0.0019 6.4E-08 55.6 3.8 61 24-85 10-101 (199)
98 3vaa_A Shikimate kinase, SK; s 96.4 0.0015 5.1E-08 54.8 2.7 47 5-51 8-57 (199)
99 1qhx_A CPT, protein (chloramph 96.4 0.0022 7.6E-08 52.0 3.6 29 24-52 8-36 (178)
100 3trf_A Shikimate kinase, SK; a 96.4 0.0015 5E-08 53.6 2.5 28 24-51 10-37 (185)
101 3cmw_A Protein RECA, recombina 96.2 0.0012 4.1E-08 72.9 1.7 63 24-86 1087-1175(1706)
102 1via_A Shikimate kinase; struc 96.2 0.0018 6.3E-08 52.8 2.4 28 24-51 9-36 (175)
103 1kag_A SKI, shikimate kinase I 96.2 0.0026 8.8E-08 51.4 3.3 26 24-49 9-34 (173)
104 1zuh_A Shikimate kinase; alpha 96.2 0.0019 6.6E-08 52.2 2.5 28 24-51 12-39 (168)
105 2ga8_A Hypothetical 39.9 kDa p 96.2 0.001 3.4E-08 62.8 0.7 45 5-49 5-54 (359)
106 3vkg_A Dynein heavy chain, cyt 96.1 0.0064 2.2E-07 70.7 6.5 69 15-84 1297-1387(3245)
107 2iyv_A Shikimate kinase, SK; t 96.0 0.0026 9E-08 52.0 2.5 28 24-51 7-34 (184)
108 2ze6_A Isopentenyl transferase 96.0 0.0032 1.1E-07 55.3 3.1 28 25-52 7-34 (253)
109 3cmu_A Protein RECA, recombina 95.9 0.0082 2.8E-07 67.3 6.5 62 24-85 1432-1519(2050)
110 1e6c_A Shikimate kinase; phosp 95.9 0.0032 1.1E-07 50.7 2.5 28 24-51 7-34 (173)
111 3iij_A Coilin-interacting nucl 95.9 0.0033 1.1E-07 51.4 2.4 27 24-50 16-42 (180)
112 1v5w_A DMC1, meiotic recombina 95.9 0.017 5.9E-07 53.0 7.6 43 24-67 127-178 (343)
113 3upu_A ATP-dependent DNA helic 95.9 0.014 4.7E-07 55.5 7.1 51 3-54 26-84 (459)
114 2rhm_A Putative kinase; P-loop 95.8 0.0034 1.2E-07 51.3 2.3 27 24-50 10-36 (193)
115 3vkg_A Dynein heavy chain, cyt 95.8 0.0085 2.9E-07 69.7 6.0 62 23-85 608-670 (3245)
116 2cvh_A DNA repair and recombin 95.8 0.012 4.1E-07 48.9 5.5 42 24-66 25-66 (220)
117 2orw_A Thymidine kinase; TMTK, 95.8 0.0034 1.2E-07 52.8 2.0 60 24-83 8-88 (184)
118 2pbr_A DTMP kinase, thymidylat 95.7 0.0095 3.2E-07 48.5 4.6 28 25-52 6-36 (195)
119 3lw7_A Adenylate kinase relate 95.7 0.0043 1.5E-07 49.1 2.4 26 24-50 6-31 (179)
120 1y63_A LMAJ004144AAA protein; 95.7 0.0039 1.3E-07 51.6 2.1 28 24-51 15-43 (184)
121 1u94_A RECA protein, recombina 95.7 0.02 6.7E-07 53.4 7.1 62 24-85 68-155 (356)
122 2pt5_A Shikimate kinase, SK; a 95.7 0.0046 1.6E-07 49.6 2.5 28 24-51 5-32 (168)
123 1tev_A UMP-CMP kinase; ploop, 95.7 0.0047 1.6E-07 50.2 2.5 27 24-50 8-34 (196)
124 2c95_A Adenylate kinase 1; tra 95.7 0.0044 1.5E-07 50.8 2.3 28 24-51 14-41 (196)
125 3t61_A Gluconokinase; PSI-biol 95.6 0.0054 1.8E-07 51.1 2.8 28 24-51 23-50 (202)
126 2if2_A Dephospho-COA kinase; a 95.6 0.0046 1.6E-07 51.4 2.3 26 25-51 7-32 (204)
127 1knq_A Gluconate kinase; ALFA/ 95.6 0.0057 1.9E-07 49.6 2.8 27 24-50 13-39 (175)
128 2zr9_A Protein RECA, recombina 95.6 0.021 7.1E-07 53.0 6.9 61 24-84 66-152 (349)
129 2cdn_A Adenylate kinase; phosp 95.6 0.0051 1.8E-07 51.2 2.5 27 24-50 25-51 (201)
130 2r8r_A Sensor protein; KDPD, P 95.6 0.018 6.2E-07 51.0 6.1 31 24-54 11-44 (228)
131 3cm0_A Adenylate kinase; ATP-b 95.6 0.0042 1.5E-07 50.7 1.9 27 24-50 9-35 (186)
132 2z0h_A DTMP kinase, thymidylat 95.6 0.012 4E-07 48.2 4.5 29 24-52 5-36 (197)
133 1n0w_A DNA repair protein RAD5 95.5 0.017 5.8E-07 48.7 5.6 55 13-68 11-81 (243)
134 1ny5_A Transcriptional regulat 95.5 0.053 1.8E-06 50.6 9.4 76 8-85 146-245 (387)
135 1kht_A Adenylate kinase; phosp 95.5 0.0043 1.5E-07 50.4 1.7 26 24-49 8-38 (192)
136 1cke_A CK, MSSA, protein (cyti 95.5 0.0071 2.4E-07 50.9 3.2 26 24-49 10-35 (227)
137 2bwj_A Adenylate kinase 5; pho 95.5 0.0053 1.8E-07 50.4 2.3 27 24-50 17-43 (199)
138 3sfz_A APAF-1, apoptotic pepti 95.5 0.027 9.2E-07 58.1 7.9 46 9-54 130-189 (1249)
139 1qf9_A UMP/CMP kinase, protein 95.5 0.0056 1.9E-07 49.7 2.3 27 24-50 11-37 (194)
140 1zp6_A Hypothetical protein AT 95.5 0.0077 2.6E-07 49.3 3.1 28 24-51 14-41 (191)
141 2pez_A Bifunctional 3'-phospho 95.5 0.0093 3.2E-07 48.7 3.6 28 24-51 10-40 (179)
142 3ake_A Cytidylate kinase; CMP 95.5 0.0062 2.1E-07 50.3 2.5 27 25-51 8-34 (208)
143 2v54_A DTMP kinase, thymidylat 95.4 0.01 3.5E-07 48.9 3.8 29 24-52 9-38 (204)
144 1xp8_A RECA protein, recombina 95.4 0.028 9.4E-07 52.7 7.0 61 24-84 79-165 (366)
145 4eun_A Thermoresistant glucoki 95.4 0.0085 2.9E-07 50.1 3.2 26 24-49 34-59 (200)
146 1jjv_A Dephospho-COA kinase; P 95.4 0.0067 2.3E-07 50.6 2.5 27 24-51 7-33 (206)
147 3dl0_A Adenylate kinase; phosp 95.4 0.007 2.4E-07 50.8 2.6 27 24-50 5-31 (216)
148 1aky_A Adenylate kinase; ATP:A 95.3 0.0071 2.4E-07 51.2 2.4 27 24-50 9-35 (220)
149 3fb4_A Adenylate kinase; psych 95.3 0.0075 2.6E-07 50.6 2.5 27 24-50 5-31 (216)
150 1ak2_A Adenylate kinase isoenz 95.3 0.0071 2.4E-07 51.9 2.4 27 24-50 21-47 (233)
151 2jaq_A Deoxyguanosine kinase; 95.3 0.0091 3.1E-07 49.0 2.9 25 25-49 6-30 (205)
152 1z6t_A APAF-1, apoptotic prote 95.2 0.029 9.8E-07 54.2 6.8 47 8-54 129-189 (591)
153 2z43_A DNA repair and recombin 95.2 0.022 7.6E-07 51.6 5.6 45 24-69 112-165 (324)
154 3nwj_A ATSK2; P loop, shikimat 95.2 0.01 3.5E-07 52.7 3.2 42 10-51 33-80 (250)
155 1ukz_A Uridylate kinase; trans 95.2 0.0085 2.9E-07 49.7 2.6 28 24-51 20-47 (203)
156 3be4_A Adenylate kinase; malar 95.2 0.0077 2.6E-07 51.1 2.2 27 24-50 10-36 (217)
157 2vli_A Antibiotic resistance p 95.1 0.008 2.7E-07 48.8 2.0 25 24-48 10-34 (183)
158 1gvn_B Zeta; postsegregational 95.1 0.026 9E-07 50.6 5.7 49 4-52 8-66 (287)
159 1zd8_A GTP:AMP phosphotransfer 95.1 0.0088 3E-07 50.9 2.3 27 24-50 12-38 (227)
160 3e1s_A Exodeoxyribonuclease V, 95.0 0.023 7.8E-07 56.1 5.4 78 2-83 189-291 (574)
161 3uie_A Adenylyl-sulfate kinase 95.0 0.016 5.4E-07 48.4 3.6 28 24-51 30-60 (200)
162 2p5t_B PEZT; postsegregational 94.9 0.026 8.8E-07 49.2 5.0 30 24-53 37-66 (253)
163 1ly1_A Polynucleotide kinase; 94.9 0.011 3.8E-07 47.5 2.3 24 24-47 7-31 (181)
164 4a74_A DNA repair and recombin 94.9 0.036 1.2E-06 46.2 5.6 45 24-69 30-83 (231)
165 1e4v_A Adenylate kinase; trans 94.9 0.011 3.8E-07 49.8 2.3 27 24-50 5-31 (214)
166 2plr_A DTMP kinase, probable t 94.9 0.028 9.5E-07 46.3 4.7 27 24-50 9-37 (213)
167 4e22_A Cytidylate kinase; P-lo 94.7 0.018 6.3E-07 50.3 3.3 26 24-49 32-57 (252)
168 3hr8_A Protein RECA; alpha and 94.6 0.068 2.3E-06 49.9 7.2 62 24-85 66-153 (356)
169 2h92_A Cytidylate kinase; ross 94.5 0.017 5.7E-07 48.5 2.6 28 24-51 8-35 (219)
170 2grj_A Dephospho-COA kinase; T 94.5 0.016 5.5E-07 49.2 2.5 27 25-51 18-44 (192)
171 1zak_A Adenylate kinase; ATP:A 94.5 0.01 3.4E-07 50.3 1.1 27 24-50 10-36 (222)
172 3r20_A Cytidylate kinase; stru 94.5 0.021 7.1E-07 50.4 3.2 27 24-50 14-40 (233)
173 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.026 9E-07 46.8 3.6 30 24-53 28-60 (235)
174 3crm_A TRNA delta(2)-isopenten 94.4 0.02 6.7E-07 53.1 3.0 28 24-51 10-37 (323)
175 1uf9_A TT1252 protein; P-loop, 94.4 0.017 5.8E-07 47.5 2.3 27 24-51 13-39 (203)
176 2b8t_A Thymidine kinase; deoxy 94.4 0.072 2.5E-06 46.5 6.4 28 24-51 17-47 (223)
177 2xb4_A Adenylate kinase; ATP-b 94.3 0.024 8.1E-07 48.4 3.1 27 24-50 5-31 (223)
178 1q3t_A Cytidylate kinase; nucl 94.3 0.024 8.3E-07 48.6 3.2 28 24-51 21-48 (236)
179 1ye8_A Protein THEP1, hypothet 94.3 0.018 6.2E-07 48.1 2.4 25 24-48 5-29 (178)
180 1vht_A Dephospho-COA kinase; s 94.2 0.02 6.8E-07 48.2 2.5 27 24-51 9-35 (218)
181 3cmw_A Protein RECA, recombina 94.2 0.063 2.2E-06 59.5 6.9 62 24-85 39-126 (1706)
182 3tlx_A Adenylate kinase 2; str 94.2 0.02 6.9E-07 49.7 2.5 27 24-50 34-60 (243)
183 1rz3_A Hypothetical protein rb 94.2 0.064 2.2E-06 44.8 5.4 31 24-54 27-60 (201)
184 2bdt_A BH3686; alpha-beta prot 94.1 0.029 1E-06 45.9 3.2 25 24-48 7-31 (189)
185 4b3f_X DNA-binding protein smu 94.1 0.062 2.1E-06 53.3 6.1 48 3-54 190-243 (646)
186 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.033 1.1E-06 48.8 3.7 29 24-52 9-40 (260)
187 1nks_A Adenylate kinase; therm 94.1 0.016 5.5E-07 46.9 1.5 28 24-51 6-36 (194)
188 2bbw_A Adenylate kinase 4, AK4 94.1 0.026 8.8E-07 48.6 2.9 26 24-49 32-57 (246)
189 3fdi_A Uncharacterized protein 94.0 0.025 8.4E-07 48.1 2.6 26 24-49 11-36 (201)
190 2qt1_A Nicotinamide riboside k 94.0 0.022 7.4E-07 47.5 2.1 26 25-50 27-53 (207)
191 3dzd_A Transcriptional regulat 93.9 0.21 7.1E-06 46.3 9.0 60 24-85 157-236 (368)
192 3c8u_A Fructokinase; YP_612366 93.9 0.041 1.4E-06 46.2 3.7 46 10-55 6-61 (208)
193 2fz4_A DNA repair protein RAD2 93.9 0.079 2.7E-06 45.8 5.7 37 17-53 104-142 (237)
194 1g5t_A COB(I)alamin adenosyltr 93.8 0.092 3.2E-06 45.3 5.9 46 24-70 33-81 (196)
195 3asz_A Uridine kinase; cytidin 93.7 0.033 1.1E-06 46.4 2.8 29 24-52 11-39 (211)
196 2wwf_A Thymidilate kinase, put 93.7 0.012 4.1E-07 48.8 0.0 23 24-46 15-37 (212)
197 3a8t_A Adenylate isopentenyltr 93.6 0.029 1E-06 52.3 2.6 28 24-51 45-72 (339)
198 1uj2_A Uridine-cytidine kinase 93.6 0.033 1.1E-06 48.3 2.7 31 24-54 27-65 (252)
199 2yvu_A Probable adenylyl-sulfa 93.6 0.048 1.6E-06 44.6 3.6 28 24-51 18-48 (186)
200 1vt4_I APAF-1 related killer D 93.6 0.16 5.3E-06 54.5 8.2 45 10-54 135-191 (1221)
201 2ged_A SR-beta, signal recogni 93.5 0.067 2.3E-06 43.2 4.3 35 9-43 27-72 (193)
202 2i1q_A DNA repair and recombin 93.5 0.071 2.4E-06 47.9 4.8 45 24-69 103-166 (322)
203 2zts_A Putative uncharacterize 93.4 0.1 3.5E-06 43.9 5.4 42 24-68 35-80 (251)
204 3tr0_A Guanylate kinase, GMP k 93.4 0.045 1.6E-06 45.0 3.1 21 24-44 12-32 (205)
205 1htw_A HI0065; nucleotide-bind 93.3 0.061 2.1E-06 44.2 3.8 34 10-43 21-57 (158)
206 1sky_E F1-ATPase, F1-ATP synth 93.3 0.06 2E-06 52.4 4.3 33 11-43 141-175 (473)
207 2a5y_B CED-4; apoptosis; HET: 93.2 0.2 6.8E-06 48.5 7.9 18 24-41 157-174 (549)
208 3sr0_A Adenylate kinase; phosp 93.1 0.052 1.8E-06 46.5 3.1 25 24-48 5-29 (206)
209 1cr0_A DNA primase/helicase; R 93.0 0.066 2.3E-06 47.2 3.8 42 12-53 25-73 (296)
210 1pzn_A RAD51, DNA repair and r 93.0 0.11 3.9E-06 47.8 5.4 20 24-43 136-155 (349)
211 2px0_A Flagellar biosynthesis 93.0 0.17 5.8E-06 45.6 6.5 30 24-53 110-143 (296)
212 3cmu_A Protein RECA, recombina 92.9 0.14 4.9E-06 57.6 6.9 74 12-85 1069-1173(2050)
213 2dr3_A UPF0273 protein PH0284; 92.9 0.07 2.4E-06 44.9 3.6 41 24-67 28-71 (247)
214 2v9p_A Replication protein E1; 92.6 0.085 2.9E-06 48.3 3.9 35 10-44 114-151 (305)
215 3zvl_A Bifunctional polynucleo 92.5 0.065 2.2E-06 50.5 3.2 25 25-49 264-288 (416)
216 3kta_A Chromosome segregation 92.5 0.051 1.8E-06 44.1 2.2 22 24-45 31-52 (182)
217 3d3q_A TRNA delta(2)-isopenten 92.5 0.057 2E-06 50.3 2.7 27 24-50 12-38 (340)
218 2f6r_A COA synthase, bifunctio 92.4 0.05 1.7E-06 48.4 2.2 25 25-50 81-105 (281)
219 3tqc_A Pantothenate kinase; bi 92.4 0.29 9.8E-06 45.0 7.4 55 7-61 72-139 (321)
220 1m7g_A Adenylylsulfate kinase; 92.4 0.066 2.3E-06 44.9 2.7 28 24-51 30-61 (211)
221 1nn5_A Similar to deoxythymidy 92.3 0.025 8.5E-07 46.9 0.0 27 24-50 14-43 (215)
222 3hdt_A Putative kinase; struct 92.3 0.058 2E-06 46.9 2.4 35 17-51 8-46 (223)
223 2jeo_A Uridine-cytidine kinase 92.3 0.057 1.9E-06 46.6 2.3 39 8-46 11-52 (245)
224 1yrb_A ATP(GTP)binding protein 92.2 0.097 3.3E-06 44.8 3.6 29 25-53 20-50 (262)
225 2j41_A Guanylate kinase; GMP, 92.0 0.062 2.1E-06 44.1 2.0 20 24-43 11-30 (207)
226 1znw_A Guanylate kinase, GMP k 91.8 0.071 2.4E-06 44.7 2.3 21 24-44 25-45 (207)
227 3umf_A Adenylate kinase; rossm 91.8 0.088 3E-06 45.7 2.9 25 24-48 34-58 (217)
228 1sq5_A Pantothenate kinase; P- 91.7 0.41 1.4E-05 43.0 7.4 34 24-57 85-123 (308)
229 1kgd_A CASK, peripheral plasma 91.7 0.076 2.6E-06 43.6 2.3 21 24-44 10-30 (180)
230 2v3c_C SRP54, signal recogniti 91.7 0.15 5E-06 48.7 4.6 30 24-53 104-136 (432)
231 3lda_A DNA repair protein RAD5 91.7 0.2 6.8E-06 47.4 5.4 45 24-69 183-236 (400)
232 1nrj_B SR-beta, signal recogni 91.7 0.17 5.9E-06 41.7 4.5 20 24-43 17-36 (218)
233 1z6g_A Guanylate kinase; struc 91.6 0.088 3E-06 44.8 2.7 32 12-43 13-47 (218)
234 1ltq_A Polynucleotide kinase; 91.6 0.058 2E-06 47.5 1.5 26 24-49 7-33 (301)
235 3a00_A Guanylate kinase, GMP k 91.6 0.083 2.8E-06 43.5 2.4 21 24-44 6-26 (186)
236 3foz_A TRNA delta(2)-isopenten 91.4 0.09 3.1E-06 48.6 2.7 27 24-50 15-41 (316)
237 3tau_A Guanylate kinase, GMP k 91.3 0.083 2.9E-06 44.4 2.2 22 24-45 13-34 (208)
238 2wsm_A Hydrogenase expression/ 91.2 0.31 1.1E-05 40.3 5.7 28 24-51 35-64 (221)
239 1gtv_A TMK, thymidylate kinase 91.2 0.05 1.7E-06 45.1 0.7 20 25-44 6-25 (214)
240 1odf_A YGR205W, hypothetical 3 91.2 0.37 1.3E-05 43.3 6.4 57 8-64 13-82 (290)
241 4eaq_A DTMP kinase, thymidylat 91.1 0.15 5E-06 44.1 3.6 27 24-50 31-59 (229)
242 3gmt_A Adenylate kinase; ssgci 91.1 0.11 3.8E-06 45.7 2.8 27 24-50 13-39 (230)
243 2ehv_A Hypothetical protein PH 91.0 0.094 3.2E-06 44.2 2.2 17 24-40 35-51 (251)
244 3exa_A TRNA delta(2)-isopenten 91.0 0.1 3.5E-06 48.4 2.5 26 24-49 8-33 (322)
245 2eyu_A Twitching motility prot 90.9 0.11 3.7E-06 46.1 2.6 33 10-44 15-50 (261)
246 4i1u_A Dephospho-COA kinase; s 90.8 0.11 3.7E-06 45.1 2.5 26 26-52 16-41 (210)
247 2qor_A Guanylate kinase; phosp 90.6 0.12 4E-06 43.2 2.4 21 24-44 17-37 (204)
248 2qm8_A GTPase/ATPase; G protei 90.5 0.23 7.9E-06 45.5 4.6 43 9-51 42-90 (337)
249 3def_A T7I23.11 protein; chlor 90.5 0.91 3.1E-05 39.3 8.2 40 4-43 15-60 (262)
250 2dpy_A FLII, flagellum-specifi 90.4 0.31 1.1E-05 46.5 5.5 43 10-53 146-191 (438)
251 2obl_A ESCN; ATPase, hydrolase 90.4 0.3 1E-05 45.1 5.2 42 10-52 60-104 (347)
252 1nlf_A Regulatory protein REPA 90.2 0.11 3.6E-06 45.7 1.9 20 24-43 35-54 (279)
253 3lnc_A Guanylate kinase, GMP k 90.1 0.095 3.2E-06 44.5 1.5 21 24-44 32-53 (231)
254 2i3b_A HCR-ntpase, human cance 90.0 0.13 4.4E-06 43.4 2.2 20 24-43 6-25 (189)
255 1a7j_A Phosphoribulokinase; tr 89.9 0.088 3E-06 47.3 1.1 30 25-54 11-43 (290)
256 1x6v_B Bifunctional 3'-phospho 89.8 0.18 6.1E-06 50.6 3.4 28 24-51 57-87 (630)
257 2pcj_A ABC transporter, lipopr 89.7 0.13 4.4E-06 44.3 2.0 21 25-45 36-56 (224)
258 3tif_A Uncharacterized ABC tra 89.7 0.12 4.2E-06 44.8 1.9 22 25-46 37-58 (235)
259 1lvg_A Guanylate kinase, GMP k 89.7 0.14 4.8E-06 42.8 2.2 21 24-44 9-29 (198)
260 1c9k_A COBU, adenosylcobinamid 89.7 0.2 6.9E-06 42.5 3.2 29 25-54 5-33 (180)
261 2onk_A Molybdate/tungstate ABC 89.6 0.15 5.2E-06 44.6 2.4 22 24-45 29-50 (240)
262 1xjc_A MOBB protein homolog; s 89.4 0.26 8.8E-06 41.3 3.6 31 24-54 9-42 (169)
263 4hlc_A DTMP kinase, thymidylat 89.3 0.32 1.1E-05 41.4 4.2 43 26-68 9-53 (205)
264 3eph_A TRNA isopentenyltransfe 89.3 0.16 5.3E-06 48.6 2.4 26 25-50 8-33 (409)
265 3p32_A Probable GTPase RV1496/ 89.2 0.23 7.8E-06 45.5 3.4 29 24-52 84-115 (355)
266 1b0u_A Histidine permease; ABC 89.2 0.16 5.3E-06 45.0 2.2 22 25-46 38-59 (262)
267 3b9q_A Chloroplast SRP recepto 89.2 0.35 1.2E-05 43.7 4.6 45 6-50 71-134 (302)
268 1lw7_A Transcriptional regulat 89.2 0.14 4.9E-06 46.9 2.0 22 25-46 176-197 (365)
269 2cbz_A Multidrug resistance-as 89.1 0.14 4.9E-06 44.5 1.8 20 25-44 37-56 (237)
270 3aez_A Pantothenate kinase; tr 89.1 0.33 1.1E-05 44.1 4.3 31 24-54 95-130 (312)
271 2rcn_A Probable GTPase ENGC; Y 89.0 0.23 7.9E-06 46.4 3.3 32 13-44 207-240 (358)
272 1g6h_A High-affinity branched- 89.0 0.17 5.7E-06 44.5 2.2 22 25-46 39-60 (257)
273 2pt7_A CAG-ALFA; ATPase, prote 89.0 0.24 8.1E-06 45.3 3.3 35 11-45 160-197 (330)
274 1mv5_A LMRA, multidrug resista 89.0 0.15 5.1E-06 44.4 1.9 20 25-44 34-53 (243)
275 2r6a_A DNAB helicase, replicat 89.0 0.29 9.8E-06 46.4 4.0 31 24-54 208-242 (454)
276 1u0l_A Probable GTPase ENGC; p 88.9 0.26 8.9E-06 44.1 3.5 23 24-46 174-196 (301)
277 2pze_A Cystic fibrosis transme 88.9 0.17 5.9E-06 43.6 2.2 21 25-45 40-60 (229)
278 3vr4_A V-type sodium ATPase ca 88.9 0.6 2.1E-05 46.6 6.3 58 24-83 237-306 (600)
279 1s96_A Guanylate kinase, GMP k 88.9 0.18 6.2E-06 43.4 2.3 22 24-45 21-42 (219)
280 3dm5_A SRP54, signal recogniti 88.8 0.61 2.1E-05 44.8 6.2 47 6-52 74-136 (443)
281 3bh0_A DNAB-like replicative h 88.8 0.27 9.2E-06 44.3 3.6 30 24-53 73-105 (315)
282 3kl4_A SRP54, signal recogniti 88.8 0.6 2E-05 44.7 6.1 47 7-53 71-134 (433)
283 3zq6_A Putative arsenical pump 88.8 0.23 7.8E-06 44.9 3.1 41 24-68 19-62 (324)
284 2gk6_A Regulator of nonsense t 88.6 0.28 9.6E-06 48.5 3.8 48 3-54 181-234 (624)
285 3gfo_A Cobalt import ATP-bindi 88.4 0.17 5.8E-06 45.3 1.9 22 25-46 40-61 (275)
286 4g1u_C Hemin import ATP-bindin 88.4 0.17 5.7E-06 45.0 1.8 21 25-45 43-63 (266)
287 1sgw_A Putative ABC transporte 88.3 0.2 6.8E-06 43.2 2.2 23 24-46 40-62 (214)
288 2ff7_A Alpha-hemolysin translo 88.3 0.17 6E-06 44.3 1.9 22 25-46 41-62 (247)
289 1ji0_A ABC transporter; ATP bi 88.3 0.2 6.8E-06 43.6 2.2 22 25-46 38-59 (240)
290 2gza_A Type IV secretion syste 88.2 0.34 1.1E-05 44.7 3.8 33 13-45 166-201 (361)
291 2qi9_C Vitamin B12 import ATP- 88.2 0.18 6.1E-06 44.4 1.9 28 24-52 31-58 (249)
292 1w4r_A Thymidine kinase; type 88.2 0.54 1.8E-05 40.4 4.8 28 24-51 25-55 (195)
293 3b85_A Phosphate starvation-in 88.2 0.17 5.8E-06 43.3 1.6 30 9-42 13-45 (208)
294 2h57_A ADP-ribosylation factor 88.1 0.28 9.5E-06 39.6 2.9 20 24-43 26-45 (190)
295 3io5_A Recombination and repai 88.1 0.44 1.5E-05 44.4 4.5 32 23-54 32-68 (333)
296 2olj_A Amino acid ABC transpor 88.0 0.21 7.2E-06 44.4 2.2 22 25-46 56-77 (263)
297 2ghi_A Transport protein; mult 87.9 0.19 6.5E-06 44.3 1.9 20 25-44 52-71 (260)
298 2dyk_A GTP-binding protein; GT 87.9 0.24 8E-06 38.3 2.2 20 24-43 6-25 (161)
299 3pqc_A Probable GTP-binding pr 87.8 0.66 2.3E-05 36.9 4.9 19 24-42 28-46 (195)
300 3mfy_A V-type ATP synthase alp 87.8 0.51 1.7E-05 47.0 5.0 58 24-83 232-301 (588)
301 1p5z_B DCK, deoxycytidine kina 87.8 0.15 5E-06 44.3 1.0 24 24-47 29-53 (263)
302 1p9r_A General secretion pathw 87.8 0.47 1.6E-05 45.0 4.6 40 10-51 157-202 (418)
303 1vpl_A ABC transporter, ATP-bi 87.8 0.22 7.5E-06 44.0 2.2 22 25-46 47-68 (256)
304 3v9p_A DTMP kinase, thymidylat 87.7 0.38 1.3E-05 41.9 3.7 28 24-51 30-64 (227)
305 2ihy_A ABC transporter, ATP-bi 87.7 0.22 7.6E-06 44.5 2.2 22 25-46 53-74 (279)
306 3sop_A Neuronal-specific septi 87.7 0.22 7.7E-06 44.2 2.2 22 25-46 8-29 (270)
307 3kjh_A CO dehydrogenase/acetyl 87.7 0.23 7.9E-06 41.6 2.2 29 26-54 7-38 (254)
308 2wji_A Ferrous iron transport 87.5 0.24 8.1E-06 39.3 2.1 19 24-42 8-26 (165)
309 2nq2_C Hypothetical ABC transp 87.5 0.21 7.3E-06 43.9 1.9 22 24-45 36-57 (253)
310 2f9l_A RAB11B, member RAS onco 87.5 0.25 8.4E-06 40.5 2.2 20 24-43 10-29 (199)
311 1fzq_A ADP-ribosylation factor 87.5 0.78 2.7E-05 36.9 5.2 19 24-42 21-39 (181)
312 2ixe_A Antigen peptide transpo 87.5 0.21 7.1E-06 44.4 1.9 22 25-46 51-72 (271)
313 1rj9_A FTSY, signal recognitio 87.5 0.23 7.9E-06 45.0 2.2 21 24-44 107-127 (304)
314 2qmh_A HPR kinase/phosphorylas 87.4 0.27 9.2E-06 42.8 2.5 25 25-50 40-64 (205)
315 2q6t_A DNAB replication FORK h 87.4 0.34 1.2E-05 45.8 3.4 30 24-53 205-238 (444)
316 2d2e_A SUFC protein; ABC-ATPas 87.4 0.24 8.1E-06 43.3 2.2 18 25-42 35-52 (250)
317 2yz2_A Putative ABC transporte 87.4 0.24 8.2E-06 43.8 2.2 22 25-46 39-60 (266)
318 4a1f_A DNAB helicase, replicat 87.4 0.54 1.9E-05 43.5 4.7 30 24-53 51-83 (338)
319 2p67_A LAO/AO transport system 87.4 0.57 2E-05 42.7 4.8 28 24-51 61-91 (341)
320 2fh5_B SR-beta, signal recogni 87.4 0.58 2E-05 38.4 4.4 19 24-42 12-30 (214)
321 1tq4_A IIGP1, interferon-induc 87.3 0.5 1.7E-05 44.9 4.5 20 24-43 74-93 (413)
322 3b1v_A Ferrous iron uptake tra 87.3 1 3.4E-05 39.9 6.2 19 24-42 8-26 (272)
323 1z2a_A RAS-related protein RAB 87.2 0.27 9.2E-06 38.1 2.2 19 24-42 10-28 (168)
324 3ney_A 55 kDa erythrocyte memb 87.2 0.27 9.1E-06 42.1 2.3 21 24-44 24-44 (197)
325 2oze_A ORF delta'; para, walke 87.1 0.64 2.2E-05 40.6 4.8 52 2-54 14-75 (298)
326 3fvq_A Fe(3+) IONS import ATP- 87.1 0.25 8.6E-06 46.2 2.2 23 24-46 35-57 (359)
327 2ce2_X GTPase HRAS; signaling 87.1 0.26 8.9E-06 37.8 2.0 19 24-42 8-26 (166)
328 3bgw_A DNAB-like replicative h 87.0 0.66 2.3E-05 44.2 5.2 31 24-54 202-235 (444)
329 4dzz_A Plasmid partitioning pr 87.0 0.47 1.6E-05 38.6 3.7 29 26-54 9-40 (206)
330 1oix_A RAS-related protein RAB 87.0 0.26 8.8E-06 40.3 2.0 20 24-43 34-53 (191)
331 2pjz_A Hypothetical protein ST 86.9 0.23 8E-06 44.1 1.9 20 24-43 35-54 (263)
332 2vp4_A Deoxynucleoside kinase; 86.9 0.3 1E-05 41.6 2.5 27 24-51 25-51 (230)
333 2it1_A 362AA long hypothetical 86.9 0.28 9.5E-06 45.8 2.4 23 24-46 34-56 (362)
334 1kao_A RAP2A; GTP-binding prot 86.9 0.29 1E-05 37.7 2.2 19 24-42 8-26 (167)
335 3iby_A Ferrous iron transport 86.8 0.92 3.1E-05 39.6 5.6 19 24-42 6-24 (256)
336 1z47_A CYSA, putative ABC-tran 86.8 0.29 9.8E-06 45.7 2.4 23 24-46 46-68 (355)
337 3gqb_A V-type ATP synthase alp 86.7 0.69 2.4E-05 46.0 5.3 59 24-84 226-296 (578)
338 2zu0_C Probable ATP-dependent 86.7 0.27 9.4E-06 43.5 2.2 19 25-43 52-70 (267)
339 2ocp_A DGK, deoxyguanosine kin 86.7 0.36 1.2E-05 41.2 2.8 21 24-44 7-27 (241)
340 2yv5_A YJEQ protein; hydrolase 86.7 0.46 1.6E-05 42.7 3.7 21 24-45 170-190 (302)
341 2nzj_A GTP-binding protein REM 86.5 0.29 1E-05 38.3 2.1 19 24-42 9-27 (175)
342 1ek0_A Protein (GTP-binding pr 86.5 0.31 1.1E-05 37.7 2.2 19 24-42 8-26 (170)
343 2zej_A Dardarin, leucine-rich 86.5 0.27 9.1E-06 39.7 1.8 19 24-42 7-25 (184)
344 1u8z_A RAS-related protein RAL 86.4 0.32 1.1E-05 37.5 2.2 19 24-42 9-27 (168)
345 3rlf_A Maltose/maltodextrin im 86.4 0.31 1E-05 46.0 2.4 23 24-46 34-56 (381)
346 2yyz_A Sugar ABC transporter, 86.3 0.31 1.1E-05 45.5 2.4 23 24-46 34-56 (359)
347 1g29_1 MALK, maltose transport 86.3 0.31 1.1E-05 45.6 2.4 23 24-46 34-56 (372)
348 2erx_A GTP-binding protein DI- 86.3 0.32 1.1E-05 37.7 2.2 19 24-42 8-26 (172)
349 3q9l_A Septum site-determining 86.3 0.52 1.8E-05 40.0 3.7 29 26-54 10-41 (260)
350 4edh_A DTMP kinase, thymidylat 86.3 0.66 2.3E-05 39.7 4.3 28 24-51 11-41 (213)
351 1v43_A Sugar-binding transport 86.2 0.31 1.1E-05 45.6 2.4 23 24-46 42-64 (372)
352 2wjg_A FEOB, ferrous iron tran 86.2 0.32 1.1E-05 38.8 2.2 19 24-42 12-30 (188)
353 3e70_C DPA, signal recognition 86.2 0.3 1E-05 44.9 2.2 28 24-51 134-164 (328)
354 3ch4_B Pmkase, phosphomevalona 86.0 0.72 2.5E-05 39.8 4.4 32 24-55 16-48 (202)
355 3k9g_A PF-32 protein; ssgcid, 86.0 0.52 1.8E-05 40.5 3.6 30 25-54 34-65 (267)
356 3q72_A GTP-binding protein RAD 86.0 0.26 8.9E-06 38.3 1.5 19 24-42 7-25 (166)
357 1g3q_A MIND ATPase, cell divis 85.9 0.56 1.9E-05 39.3 3.7 29 26-54 10-41 (237)
358 1f2t_A RAD50 ABC-ATPase; DNA d 85.9 0.32 1.1E-05 39.1 2.0 20 24-43 28-47 (149)
359 3ug7_A Arsenical pump-driving 85.9 0.52 1.8E-05 43.2 3.7 41 25-69 32-75 (349)
360 1z0j_A RAB-22, RAS-related pro 85.8 0.35 1.2E-05 37.5 2.2 20 24-43 11-30 (170)
361 1c1y_A RAS-related protein RAP 85.8 0.35 1.2E-05 37.4 2.2 19 24-42 8-26 (167)
362 1g16_A RAS-related protein SEC 85.8 0.33 1.1E-05 37.7 2.0 19 24-42 8-26 (170)
363 1r2q_A RAS-related protein RAB 85.8 0.35 1.2E-05 37.4 2.2 19 24-42 11-29 (170)
364 2axn_A 6-phosphofructo-2-kinas 85.8 0.48 1.6E-05 46.1 3.6 28 25-52 41-71 (520)
365 3q85_A GTP-binding protein REM 85.8 0.34 1.2E-05 37.8 2.1 19 24-42 7-25 (169)
366 2hxs_A RAB-26, RAS-related pro 85.7 0.37 1.3E-05 37.9 2.3 19 24-42 11-29 (178)
367 2wjy_A Regulator of nonsense t 85.7 0.49 1.7E-05 48.5 3.7 48 3-54 357-410 (800)
368 4gp7_A Metallophosphoesterase; 85.7 0.35 1.2E-05 39.3 2.1 17 24-40 14-30 (171)
369 1wms_A RAB-9, RAB9, RAS-relate 85.5 0.37 1.3E-05 37.9 2.2 19 24-42 12-30 (177)
370 1vma_A Cell division protein F 85.5 0.54 1.8E-05 42.7 3.6 46 7-52 79-140 (306)
371 1r8s_A ADP-ribosylation factor 85.5 0.37 1.3E-05 37.3 2.2 19 24-42 5-23 (164)
372 1m8p_A Sulfate adenylyltransfe 85.5 0.39 1.3E-05 47.4 2.8 28 25-52 402-433 (573)
373 3jvv_A Twitching mobility prot 85.5 0.33 1.1E-05 45.1 2.1 58 24-81 128-206 (356)
374 1z08_A RAS-related protein RAB 85.5 0.37 1.3E-05 37.5 2.2 19 24-42 11-29 (170)
375 2yhs_A FTSY, cell division pro 85.4 0.68 2.3E-05 45.3 4.4 27 25-51 299-328 (503)
376 1np6_A Molybdopterin-guanine d 85.4 0.63 2.2E-05 38.7 3.7 30 24-53 11-43 (174)
377 2qe7_A ATP synthase subunit al 85.4 1.1 3.7E-05 43.9 5.8 27 24-50 167-194 (502)
378 2xzl_A ATP-dependent helicase 85.2 0.81 2.8E-05 46.9 5.1 48 3-54 361-414 (802)
379 1q57_A DNA primase/helicase; d 85.2 0.51 1.7E-05 45.1 3.4 31 24-54 247-281 (503)
380 2bbs_A Cystic fibrosis transme 85.2 0.3 1E-05 44.0 1.7 20 25-44 70-89 (290)
381 2ph1_A Nucleotide-binding prot 85.2 0.63 2.2E-05 40.2 3.7 29 26-54 26-57 (262)
382 3ice_A Transcription terminati 85.2 1 3.4E-05 43.2 5.3 20 24-43 179-198 (422)
383 3tw8_B RAS-related protein RAB 85.1 0.32 1.1E-05 38.1 1.7 19 24-42 14-32 (181)
384 1j8m_F SRP54, signal recogniti 85.1 0.49 1.7E-05 42.6 3.1 48 7-54 72-136 (297)
385 1fx0_A ATP synthase alpha chai 85.1 1 3.5E-05 44.1 5.5 27 24-50 168-195 (507)
386 3clv_A RAB5 protein, putative; 85.1 0.4 1.4E-05 38.1 2.2 19 24-42 12-30 (208)
387 2y8e_A RAB-protein 6, GH09086P 85.0 0.38 1.3E-05 37.7 2.0 19 24-42 19-37 (179)
388 2j37_W Signal recognition part 84.9 0.54 1.8E-05 45.8 3.4 46 7-52 75-137 (504)
389 3d31_A Sulfate/molybdate ABC t 84.9 0.26 8.9E-06 45.8 1.1 23 24-46 31-53 (348)
390 3cr8_A Sulfate adenylyltranfer 84.8 0.27 9.3E-06 48.4 1.3 29 24-52 374-406 (552)
391 3ea0_A ATPase, para family; al 84.8 0.68 2.3E-05 38.9 3.7 29 26-54 12-44 (245)
392 1ky3_A GTP-binding protein YPT 84.8 0.41 1.4E-05 37.5 2.2 19 24-42 13-31 (182)
393 3con_A GTPase NRAS; structural 84.8 0.41 1.4E-05 38.3 2.2 19 24-42 26-44 (190)
394 2gj8_A MNME, tRNA modification 84.8 0.39 1.3E-05 38.5 2.0 19 24-42 9-27 (172)
395 1xx6_A Thymidine kinase; NESG, 84.8 0.61 2.1E-05 39.4 3.3 28 24-51 13-43 (191)
396 2oap_1 GSPE-2, type II secreti 84.7 0.67 2.3E-05 45.1 4.0 33 181-213 475-508 (511)
397 2cxx_A Probable GTP-binding pr 84.7 0.38 1.3E-05 38.2 1.9 19 24-42 6-24 (190)
398 2fn4_A P23, RAS-related protei 84.6 0.4 1.4E-05 37.6 2.0 19 24-42 14-32 (181)
399 3oaa_A ATP synthase subunit al 84.6 1 3.4E-05 44.3 5.2 27 24-50 167-194 (513)
400 3gd7_A Fusion complex of cysti 84.6 0.35 1.2E-05 45.6 1.9 20 25-44 53-72 (390)
401 3k53_A Ferrous iron transport 84.5 0.39 1.3E-05 41.9 2.0 19 24-42 8-26 (271)
402 1m2o_B GTP-binding protein SAR 84.5 0.39 1.3E-05 39.1 1.9 19 24-42 28-46 (190)
403 3t1o_A Gliding protein MGLA; G 84.5 0.44 1.5E-05 37.9 2.2 21 24-44 19-39 (198)
404 2ewv_A Twitching motility prot 84.4 0.4 1.4E-05 44.5 2.2 21 24-44 141-161 (372)
405 1z0f_A RAB14, member RAS oncog 84.4 0.45 1.5E-05 37.2 2.2 19 24-42 20-38 (179)
406 3end_A Light-independent proto 84.4 0.63 2.1E-05 41.1 3.4 31 24-54 46-79 (307)
407 3hjn_A DTMP kinase, thymidylat 84.4 1 3.6E-05 37.8 4.6 28 26-53 7-37 (197)
408 1qhl_A Protein (cell division 84.4 0.27 9.1E-06 42.9 0.9 22 24-45 32-53 (227)
409 3bc1_A RAS-related protein RAB 84.4 0.45 1.5E-05 37.7 2.2 19 24-42 16-34 (195)
410 1upt_A ARL1, ADP-ribosylation 84.2 0.47 1.6E-05 36.9 2.2 19 24-42 12-30 (171)
411 1pui_A ENGB, probable GTP-bind 84.2 0.19 6.6E-06 41.1 -0.1 20 24-43 31-50 (210)
412 4dsu_A GTPase KRAS, isoform 2B 84.1 0.46 1.6E-05 37.6 2.2 20 24-43 9-28 (189)
413 1jr3_D DNA polymerase III, del 84.1 0.94 3.2E-05 40.6 4.5 58 24-82 23-87 (343)
414 1hyq_A MIND, cell division inh 84.1 0.75 2.6E-05 39.3 3.7 29 26-54 10-41 (263)
415 2lkc_A Translation initiation 84.0 0.48 1.6E-05 37.2 2.2 19 24-42 13-31 (178)
416 2og2_A Putative signal recogni 84.0 0.42 1.4E-05 44.5 2.1 27 25-51 163-192 (359)
417 1h65_A Chloroplast outer envel 83.9 1.1 3.8E-05 38.9 4.7 41 3-43 17-63 (270)
418 1svi_A GTP-binding protein YSX 83.9 0.44 1.5E-05 38.2 2.0 19 24-42 28-46 (195)
419 2r9v_A ATP synthase subunit al 83.9 1 3.4E-05 44.3 4.8 27 24-50 180-207 (515)
420 1zj6_A ADP-ribosylation factor 83.6 0.93 3.2E-05 36.2 3.8 24 18-41 11-38 (187)
421 2f1r_A Molybdopterin-guanine d 83.6 0.23 7.8E-06 41.3 0.1 30 24-53 7-39 (171)
422 1oxx_K GLCV, glucose, ABC tran 83.6 0.26 9E-06 45.7 0.6 23 24-46 36-58 (353)
423 2oil_A CATX-8, RAS-related pro 83.4 0.51 1.8E-05 37.9 2.2 19 24-42 30-48 (193)
424 2npi_A Protein CLP1; CLP1-PCF1 83.4 0.44 1.5E-05 45.8 2.0 30 14-43 130-162 (460)
425 1cp2_A CP2, nitrogenase iron p 83.3 0.73 2.5E-05 39.5 3.2 30 25-54 7-39 (269)
426 2www_A Methylmalonic aciduria 83.3 0.77 2.6E-05 42.1 3.6 20 24-43 79-98 (349)
427 1ls1_A Signal recognition part 83.2 0.82 2.8E-05 41.0 3.7 47 7-53 74-135 (295)
428 1g8f_A Sulfate adenylyltransfe 83.2 1.1 3.8E-05 43.7 4.9 43 10-52 379-433 (511)
429 1zu4_A FTSY; GTPase, signal re 83.2 0.81 2.8E-05 41.7 3.7 29 25-53 111-142 (320)
430 3qks_A DNA double-strand break 83.1 0.4 1.4E-05 40.4 1.5 22 24-45 28-49 (203)
431 3tui_C Methionine import ATP-b 83.1 0.47 1.6E-05 44.5 2.1 22 25-46 60-81 (366)
432 1f6b_A SAR1; gtpases, N-termin 83.1 0.39 1.3E-05 39.5 1.3 18 24-41 30-47 (198)
433 1ex7_A Guanylate kinase; subst 83.1 0.79 2.7E-05 38.7 3.3 23 24-46 6-28 (186)
434 2c61_A A-type ATP synthase non 83.0 1.1 3.6E-05 43.6 4.6 22 24-45 157-178 (469)
435 3ez2_A Plasmid partition prote 82.9 0.79 2.7E-05 42.3 3.5 29 26-54 116-153 (398)
436 2bme_A RAB4A, RAS-related prot 82.8 0.53 1.8E-05 37.3 2.0 19 24-42 15-33 (186)
437 2g6b_A RAS-related protein RAB 82.8 0.57 2E-05 36.8 2.2 19 24-42 15-33 (180)
438 3tmk_A Thymidylate kinase; pho 82.7 0.77 2.6E-05 39.6 3.2 28 24-51 10-37 (216)
439 2iwr_A Centaurin gamma 1; ANK 82.7 0.46 1.6E-05 37.5 1.6 19 24-42 12-30 (178)
440 2a9k_A RAS-related protein RAL 82.6 0.58 2E-05 36.8 2.2 19 24-42 23-41 (187)
441 2efe_B Small GTP-binding prote 82.5 0.59 2E-05 36.8 2.2 19 24-42 17-35 (181)
442 1m7b_A RND3/RHOE small GTP-bin 82.5 0.55 1.9E-05 37.6 2.0 19 24-42 12-30 (184)
443 1mh1_A RAC1; GTP-binding, GTPa 82.4 0.6 2E-05 36.8 2.2 19 24-42 10-28 (186)
444 2afh_E Nitrogenase iron protei 82.4 0.82 2.8E-05 39.9 3.2 30 25-54 8-40 (289)
445 2gf9_A RAS-related protein RAB 82.2 0.61 2.1E-05 37.4 2.2 19 24-42 27-45 (189)
446 1ksh_A ARF-like protein 2; sma 82.2 0.56 1.9E-05 37.3 2.0 20 24-43 23-42 (186)
447 2xxa_A Signal recognition part 82.0 0.92 3.2E-05 43.2 3.7 48 7-54 74-139 (433)
448 3bwd_D RAC-like GTP-binding pr 82.0 0.64 2.2E-05 36.6 2.2 19 24-42 13-31 (182)
449 2hf9_A Probable hydrogenase ni 81.9 0.58 2E-05 38.8 2.0 21 24-44 43-63 (226)
450 3tkl_A RAS-related protein RAB 81.7 0.65 2.2E-05 37.1 2.2 19 24-42 21-39 (196)
451 3nh6_A ATP-binding cassette SU 81.7 0.35 1.2E-05 44.0 0.6 22 25-46 86-107 (306)
452 3cwq_A Para family chromosome 81.7 0.94 3.2E-05 38.0 3.3 28 26-54 8-38 (209)
453 3iqw_A Tail-anchored protein t 81.6 1 3.5E-05 41.3 3.7 41 24-68 21-64 (334)
454 1vg8_A RAS-related protein RAB 81.6 0.65 2.2E-05 37.6 2.2 20 24-43 13-32 (207)
455 3kkq_A RAS-related protein M-R 81.6 0.67 2.3E-05 36.7 2.2 19 24-42 23-41 (183)
456 2xj4_A MIPZ; replication, cell 81.5 1.1 3.7E-05 39.4 3.7 29 26-54 12-43 (286)
457 3fkq_A NTRC-like two-domain pr 81.5 1 3.5E-05 41.4 3.7 28 26-53 151-181 (373)
458 3lxx_A GTPase IMAP family memb 81.5 0.64 2.2E-05 39.4 2.2 20 24-43 34-53 (239)
459 1z06_A RAS-related protein RAB 81.4 0.68 2.3E-05 37.1 2.2 19 24-42 25-43 (189)
460 3reg_A RHO-like small GTPase; 81.1 0.7 2.4E-05 37.2 2.2 20 24-43 28-47 (194)
461 2fg5_A RAB-22B, RAS-related pr 81.1 0.65 2.2E-05 37.5 2.0 19 24-42 28-46 (192)
462 1zbd_A Rabphilin-3A; G protein 81.1 0.7 2.4E-05 37.4 2.2 19 24-42 13-31 (203)
463 2atv_A RERG, RAS-like estrogen 81.0 0.7 2.4E-05 37.4 2.2 19 24-42 33-51 (196)
464 1x3s_A RAS-related protein RAB 80.9 0.72 2.5E-05 36.7 2.2 19 24-42 20-38 (195)
465 2bov_A RAla, RAS-related prote 80.9 0.72 2.4E-05 37.2 2.2 19 24-42 19-37 (206)
466 3dz8_A RAS-related protein RAB 80.9 0.67 2.3E-05 37.3 2.0 20 24-43 28-47 (191)
467 1zd9_A ADP-ribosylation factor 80.9 0.72 2.5E-05 37.1 2.2 19 24-42 27-45 (188)
468 2aka_B Dynamin-1; fusion prote 80.9 1.2 4.2E-05 38.5 3.8 34 10-43 6-50 (299)
469 3oes_A GTPase rhebl1; small GT 80.9 0.67 2.3E-05 37.7 2.0 19 24-42 29-47 (201)
470 2p5s_A RAS and EF-hand domain 80.7 0.74 2.5E-05 37.4 2.2 19 24-42 33-51 (199)
471 3cph_A RAS-related protein SEC 80.6 0.75 2.6E-05 37.4 2.2 19 24-42 25-43 (213)
472 2gf0_A GTP-binding protein DI- 80.5 0.7 2.4E-05 37.0 2.0 18 24-41 13-30 (199)
473 1bif_A 6-phosphofructo-2-kinas 80.5 0.37 1.3E-05 45.8 0.3 22 24-45 44-65 (469)
474 3c5c_A RAS-like protein 12; GD 80.5 0.75 2.6E-05 37.1 2.2 19 24-42 26-44 (187)
475 2a5j_A RAS-related protein RAB 80.4 0.77 2.6E-05 37.0 2.2 18 25-42 27-44 (191)
476 3t5g_A GTP-binding protein RHE 80.3 0.73 2.5E-05 36.4 2.0 18 24-41 11-28 (181)
477 2bcg_Y Protein YP2, GTP-bindin 80.3 0.72 2.5E-05 37.5 2.0 19 24-42 13-31 (206)
478 1tf7_A KAIC; homohexamer, hexa 80.2 0.65 2.2E-05 44.8 2.0 29 24-52 286-317 (525)
479 2h17_A ADP-ribosylation factor 80.2 0.69 2.3E-05 36.9 1.8 19 24-42 26-44 (181)
480 3vr4_D V-type sodium ATPase su 80.1 1.4 4.7E-05 42.8 4.2 22 24-45 156-177 (465)
481 1w36_D RECD, exodeoxyribonucle 80.1 0.69 2.4E-05 45.7 2.1 31 24-54 169-206 (608)
482 2b6h_A ADP-ribosylation factor 79.9 0.53 1.8E-05 38.3 1.0 18 24-41 34-51 (192)
483 3a1s_A Iron(II) transport prot 79.8 0.77 2.6E-05 40.1 2.2 19 24-42 10-28 (258)
484 1wcv_1 SOJ, segregation protei 79.8 0.84 2.9E-05 39.2 2.4 29 26-54 14-45 (257)
485 1yqt_A RNAse L inhibitor; ATP- 79.6 0.72 2.5E-05 45.0 2.1 19 25-43 53-71 (538)
486 1moz_A ARL1, ADP-ribosylation 79.5 0.5 1.7E-05 37.4 0.8 18 24-41 23-40 (183)
487 3ec1_A YQEH GTPase; atnos1, at 79.5 1.6 5.5E-05 40.3 4.3 35 8-42 149-185 (369)
488 3cbq_A GTP-binding protein REM 79.5 0.57 2E-05 38.4 1.1 19 24-42 28-46 (195)
489 3gqb_B V-type ATP synthase bet 79.5 1.4 4.8E-05 42.7 4.0 22 24-45 152-173 (464)
490 2woo_A ATPase GET3; tail-ancho 79.2 1.3 4.6E-05 40.0 3.6 41 24-68 24-67 (329)
491 4tmk_A Protein (thymidylate ki 79.2 1.8 6.1E-05 37.1 4.2 20 24-43 8-27 (213)
492 2il1_A RAB12; G-protein, GDP, 79.1 0.73 2.5E-05 37.3 1.7 19 24-42 31-49 (192)
493 4bas_A ADP-ribosylation factor 79.1 0.74 2.5E-05 36.9 1.7 19 24-42 22-40 (199)
494 3i8s_A Ferrous iron transport 79.0 0.77 2.6E-05 40.3 1.9 19 24-42 8-26 (274)
495 3ld9_A DTMP kinase, thymidylat 79.0 0.96 3.3E-05 39.3 2.5 26 24-49 26-55 (223)
496 2qnr_A Septin-2, protein NEDD5 79.0 0.71 2.4E-05 41.4 1.7 19 24-42 23-41 (301)
497 2qag_B Septin-6, protein NEDD5 78.9 0.71 2.4E-05 44.2 1.7 32 12-43 30-66 (427)
498 2q3h_A RAS homolog gene family 78.8 0.87 3E-05 36.8 2.1 19 24-42 25-43 (201)
499 2atx_A Small GTP binding prote 78.8 0.86 2.9E-05 36.6 2.0 19 24-42 23-41 (194)
500 2qu8_A Putative nucleolar GTP- 78.7 0.84 2.9E-05 38.2 2.0 19 24-42 34-52 (228)
No 1
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.3e-18 Score=165.28 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMEL 62 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L 62 (268)
.--+++|++|...+..||...+ +|||||||||+||+|||++++++++.++.++.. .+...+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~i 263 (434)
T 4b4t_M 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLV 263 (434)
T ss_dssp CSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHH
Confidence 4457899999999999887543 589999999999999999999999999998742 244678
Q ss_pred HHHHHhcC--CCeeEEEeCCccchhhhhhhhhhc-----------------C--CCCcee----eeee-------cccCC
Q 024362 63 RNLLIATE--NKSLLVVEDIDCSIELQNRHAQAL-----------------A--VNPMVS----NMNY-------TARPG 110 (268)
Q Consensus 63 ~~lf~~~p--~~~IiliEDID~~~~~~~R~~~~~-----------------~--~~~~~v----TLN~-------kiRPG 110 (268)
+.+|..+. .||||+|||||+++. .|..... + ....+| |+|. .+|||
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~--~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpG 341 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGT--KRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSG 341 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHC--CCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTT
T ss_pred HHHHHHHHhcCCeEEeecchhhhhh--ccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCC
Confidence 99998664 699999999999876 3322111 1 111222 2777 39999
Q ss_pred CCcccccccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 111 INQGPQVGSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 111 RvD~~I~~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
|+|++| .|. .+.+.|+. ...--+..+.... .++|+|||..++
T Consensus 342 RfD~~I-~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t--~G~sGADi~~l~ 395 (434)
T 4b4t_M 342 RLDRKI-EFPLPSEDSRAQILQIHSRKMTTDDDINWQELARST--DEFNGAQLKAVT 395 (434)
T ss_dssp SEEEEE-ECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHC--SSCCHHHHHHHH
T ss_pred ceeEEE-EeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC--CCCCHHHHHHHH
Confidence 999999 443 11121211 1111244444433 368999998765
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.4e-18 Score=163.13 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+++|++|..-+...+...+ +|||||||||+||+|+|++++++++.++.++.. .+...++.+
T Consensus 154 ~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~l 233 (405)
T 4b4t_J 154 TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233 (405)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHH
Confidence 4677777776666444321 699999999999999999999999999998742 245778999
Q ss_pred HHhc--CCCeeEEEeCCccchhhhhhhhhhc---------------C--CCCceee----eee-------cccCCCCccc
Q 024362 66 LIAT--ENKSLLVVEDIDCSIELQNRHAQAL---------------A--VNPMVSN----MNY-------TARPGINQGP 115 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~~~~R~~~~~---------------~--~~~~~vT----LN~-------kiRPGRvD~~ 115 (268)
|..+ ..||||+|||||+++..+....... + ....+|. +|. .+||||+|++
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~ 313 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRK 313 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCE
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceE
Confidence 9877 4699999999999986322111110 0 1222332 777 2999999999
Q ss_pred ccccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 116 QVGSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 116 I~~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
| .|. .+.+.|+. ...--+..+.... .++|+|||..++
T Consensus 314 I-~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t--~G~SGADi~~l~ 362 (405)
T 4b4t_J 314 I-EFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKM--NGCSGADVKGVC 362 (405)
T ss_dssp E-ECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred E-EcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHC--CCCCHHHHHHHH
Confidence 9 433 12222221 1111244444433 368999998764
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.2e-18 Score=162.41 Aligned_cols=146 Identities=17% Similarity=0.103 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+++|++|...+..|+...+ +|||||||||+||.|||+++++++|.++.++.. -+...++.+
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~l 267 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQI 267 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHH
Confidence 5789999999999886543 589999999999999999999999999988732 244668899
Q ss_pred HHhc--CCCeeEEEeCCccchhhhhhhhhhcC-------------------CCCcee----eeee-------cccCCCCc
Q 024362 66 LIAT--ENKSLLVVEDIDCSIELQNRHAQALA-------------------VNPMVS----NMNY-------TARPGINQ 113 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~~~~R~~~~~~-------------------~~~~~v----TLN~-------kiRPGRvD 113 (268)
|..+ ..||||+|||||+++. .|...... ....+| |+|. .+||||+|
T Consensus 268 F~~Ar~~aP~IIfiDEiDai~~--~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD 345 (437)
T 4b4t_I 268 FKVAGENAPSIVFIDEIDAIGT--KRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRID 345 (437)
T ss_dssp HHHHHHTCSEEEEEEEESSSSC--CCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEE
T ss_pred HHHHHhcCCcEEEEehhhhhcc--cCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCcee
Confidence 9876 4699999999999986 44222110 111222 1677 39999999
Q ss_pred ccccccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 114 GPQVGSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 114 ~~I~~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
++| .|. .+.+.|+. ...--+..+.... .++|+|||..++
T Consensus 346 ~~I-~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T--~GfSGADI~~l~ 396 (437)
T 4b4t_I 346 RKI-LFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTK--DDLSGADIQAMC 396 (437)
T ss_dssp EEE-CCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred EEE-EcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC--CCCCHHHHHHHH
Confidence 999 443 12222221 1111244444433 368999998765
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-17 Score=161.91 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+++|++|...+..++...+ +|||||||||+||.|||+++|+++|.++.++.. .+...++.+
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~ 266 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHH
Confidence 5788999888888776532 689999999999999999999999999988732 234668888
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..||||+|||||+++.
T Consensus 267 F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSC
T ss_pred HHHHHhcCCceeeeeccccccc
Confidence 8876 4699999999999986
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=159.98 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+++|++|...+..|+...+ +|||||||||+||+|||+++++++|.+++++.. .+...++.+
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~l 257 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDV 257 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHH
Confidence 5789999999999887653 589999999999999999999999999998732 244778999
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..||||+|||||+.+.
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~ 279 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIAT 279 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHC
T ss_pred HHHHHHcCCCeeechhhhhhhc
Confidence 9876 4699999999999986
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.2e-17 Score=159.46 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
+++|++|...|..+|...+ +|||||||||+||.|||++++++++.++.++.. .+...++.+
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~l 294 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHH
Confidence 5688888888877665432 689999999999999999999999999988732 245678999
Q ss_pred HHhc--CCCeeEEEeCCccchhhhhhhhhhc-------------------CCCCcee----eeee-------cccCCCCc
Q 024362 66 LIAT--ENKSLLVVEDIDCSIELQNRHAQAL-------------------AVNPMVS----NMNY-------TARPGINQ 113 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~~~~R~~~~~-------------------~~~~~~v----TLN~-------kiRPGRvD 113 (268)
|..+ ..||||+|||||+++. .|..... .....+| |+|. .+||||+|
T Consensus 295 F~~Ar~~aP~IIfiDEiDai~~--~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 295 FEMARTKKACIIFFDEIDAVGG--ARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRID 372 (467)
T ss_dssp HHHHHHTCSEEEEEECCTTTSB--CCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCC
T ss_pred HHHHHhcCCceEeecccccccc--cccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccccc
Confidence 9876 5699999999999986 3322110 0112222 2776 29999999
Q ss_pred ccccccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 114 GPQVGSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 114 ~~I~~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
++| .|. .+.+.|+. ...--+..+.... .++|+|||..++
T Consensus 373 ~~I-~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T--~GfSGADI~~l~ 423 (467)
T 4b4t_H 373 RKV-EFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLC--PNSTGAELRSVC 423 (467)
T ss_dssp EEE-CCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred EEE-EeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHC--CCCCHHHHHHHH
Confidence 999 443 12222221 1111244454443 368999998765
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.53 E-value=6.6e-15 Score=151.49 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-++.|++|...+...+...+ +|||||||||.|++|||++++++++.++.++. +.++..++.
T Consensus 482 l~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~ 561 (806)
T 3cf2_A 482 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561 (806)
T ss_dssp CHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHH
Confidence 35677777666665543321 69999999999999999999999999998763 357788999
Q ss_pred HHHhcC--CCeeEEEeCCccchhhhhhhhhh---cC----------------CCCceee----eee-------cccCCCC
Q 024362 65 LLIATE--NKSLLVVEDIDCSIELQNRHAQA---LA----------------VNPMVSN----MNY-------TARPGIN 112 (268)
Q Consensus 65 lf~~~p--~~~IiliEDID~~~~~~~R~~~~---~~----------------~~~~~vT----LN~-------kiRPGRv 112 (268)
+|..+. .||||+|||||+.+. .|.... .. ....+|- +|. .+||||+
T Consensus 562 lF~~Ar~~~P~IifiDEiDsl~~--~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRf 639 (806)
T 3cf2_A 562 IFDKARQAAPCVLFFDELDSIAK--ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRL 639 (806)
T ss_dssp HHHHHHTTCSEEEECSCGGGCC----------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTS
T ss_pred HHHHHHHcCCceeechhhhHHhh--ccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcc
Confidence 999874 599999999999986 443211 00 1112222 666 2999999
Q ss_pred cccccccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHhh
Q 024362 113 QGPQVGSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERLM 156 (268)
Q Consensus 113 D~~I~~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l~ 156 (268)
|++| .|. .+.+.|+. ...--+..+.... .++|+|||.+++.
T Consensus 640 d~~i-~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t--~g~SGadi~~l~~ 692 (806)
T 3cf2_A 640 DQLI-YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT--NGFSGADLTEICQ 692 (806)
T ss_dssp CCEE-EC-----CHHHHTTTTTSSCC--CCC------------------CHHHHHH
T ss_pred eEEE-EECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhC--CCCCHHHHHHHHH
Confidence 9999 222 23333332 1111133333332 3689999988653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.44 E-value=1.5e-13 Score=141.55 Aligned_cols=145 Identities=13% Similarity=0.062 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHH
Q 024362 6 DVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLL 66 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf 66 (268)
++|++|..-+...|...+ +|||||||||+|++|||+++|.++|.++.++. +.+...++.+|
T Consensus 211 ~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF 290 (806)
T 3cf2_A 211 KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290 (806)
T ss_dssp TTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHH
Confidence 466777666655454322 58999999999999999999999999997662 23457799999
Q ss_pred HhcC--CCeeEEEeCCccchhhhhhhhhhcC----------------CCCceee----eee-------cccCCCCccccc
Q 024362 67 IATE--NKSLLVVEDIDCSIELQNRHAQALA----------------VNPMVSN----MNY-------TARPGINQGPQV 117 (268)
Q Consensus 67 ~~~p--~~~IiliEDID~~~~~~~R~~~~~~----------------~~~~~vT----LN~-------kiRPGRvD~~I~ 117 (268)
..+. .||||+|||||+.+. .|.....+ ....+|. +|. ..||||+|++|
T Consensus 291 ~~A~~~~PsIIfIDEiDal~~--~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I- 367 (806)
T 3cf2_A 291 EEAEKNAPAIIFIDELDAIAP--KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV- 367 (806)
T ss_dssp HHHTTSCSEEEEEESGGGTCC--TTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEE-
T ss_pred HHHHHcCCeEEEEehhccccc--ccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEE-
Confidence 9875 599999999999986 34322111 0112222 555 38999999999
Q ss_pred ccc--------ccccccCC----CchhhHHHHHHhhhcCCCChHHHHHHh
Q 024362 118 GSK--------CWAPTTLE----SEHPFSLEIEELTEKVMVTPADVAERL 155 (268)
Q Consensus 118 ~f~--------~~a~~y~~----~~~~lf~~i~~~~~~~~~tpAei~~~l 155 (268)
.+. .+.+.|+. ...--+..+... ..++++||+..++
T Consensus 368 ~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~--T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE--THGHVGADLAALC 415 (806)
T ss_dssp ECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH--CCSCCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHh--cCCCCHHHHHHHH
Confidence 333 22222322 111123444433 3468999988764
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.33 E-value=5.5e-12 Score=113.77 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc-----ChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR-----GNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~-----~d~~L~~l 65 (268)
+++|+.|...+..++.... .|||+|||||+|+.|||+.++.+++.++.++... ....++.+
T Consensus 16 ~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~v 95 (274)
T 2x8a_A 16 EDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 95 (274)
T ss_dssp HHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHH
Confidence 4567777666665554421 6899999999999999999999999998766211 23457888
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|... ..+||+++||||..+.
T Consensus 96 f~~a~~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 96 FQRAKNSAPCVIFFDEVDALCP 117 (274)
T ss_dssp HHHHHHTCSEEEEEETCTTTCC
T ss_pred HHHHHhcCCCeEeeehhhhhhc
Confidence 8875 4689999999998764
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.28 E-value=1e-10 Score=105.95 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHhh-----------cCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFL-----------KRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl-----------~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-+.+|+.|..-+...+ .+.. +||++|||||+|+.|||+.++.+++.++.++. +.+...++.
T Consensus 20 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~ 99 (301)
T 3cf0_A 20 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 99 (301)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHH
Confidence 4567777777776542 2222 79999999999999999999999999986652 234566788
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||....
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHH
T ss_pred HHHHHHhcCCeEEEEEChHHHhh
Confidence 88876 3589999999999875
No 11
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.26 E-value=2.3e-12 Score=116.94 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=48.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
+|||||||||+|+.|||+.+|++++.++.++.. .....++.+|..+ ..+|||+|||||.++.
T Consensus 41 l~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 689999999999999999999999999987621 1345677888766 2689999999999875
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.21 E-value=5.9e-11 Score=103.25 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHhhcCcc-------------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRKD-------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~~-------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
-+..|+.|.+-+..+..+.. +||++|||||+++.++|+.++.+++.++.+... .+...++.+
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHH
Confidence 45667776554443322221 689999999999999999999999999987621 233567778
Q ss_pred HHhcC--CCeeEEEeCCccchh
Q 024362 66 LIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~ 85 (268)
|..+. .+|||+|||||....
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HHHHHHTCSEEEEEECC-----
T ss_pred HHHHHhcCCeEEEEeCcchhhc
Confidence 87664 589999999999864
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.18 E-value=7.2e-11 Score=115.09 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHhhcCc------------c--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRK------------D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~------------~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~ 64 (268)
-++.|++|..-+ .|+... . +||+||||||+|++|||+.++.+++.++.++.. .....++.
T Consensus 21 ~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~ 99 (476)
T 2ce7_A 21 AEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRD 99 (476)
T ss_dssp CHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHH
Confidence 356677665444 454321 1 689999999999999999999999999987632 23456788
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||+.+.
T Consensus 100 lf~~A~~~~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 100 LFAQAKAHAPCIVFIDEIDAVGR 122 (476)
T ss_dssp HHHHHHHTCSEEEEEETGGGTCC
T ss_pred HHHHHHhcCCCEEEEechhhhhh
Confidence 88876 4689999999999875
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.13 E-value=3.9e-10 Score=98.86 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHhhcC------------cc--ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKR------------KD--FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMEL 62 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~------------~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L 62 (268)
+-.+..|+.|..-+ .|+.. .. .||++|||||+|+.|||+.++.+++.++.+.. +.....+
T Consensus 15 ~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~ 93 (257)
T 1lv7_A 15 AGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 93 (257)
T ss_dssp CSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHH
T ss_pred cCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHH
Confidence 34466777775544 44432 11 78999999999999999999999999987652 2345678
Q ss_pred HHHHHhcC--CCeeEEEeCCccchh
Q 024362 63 RNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 63 ~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
+.+|..+. .+||++|||||..+.
T Consensus 94 ~~~~~~a~~~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 94 RDMFEQAKKAAPCIIFIDEIDAVGR 118 (257)
T ss_dssp HHHHHHHHTTCSEEEEETTHHHHTC
T ss_pred HHHHHHHHHcCCeeehhhhhhhhcc
Confidence 88888763 479999999998764
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.13 E-value=2.3e-10 Score=101.31 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhhcC-----------cc---ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKR-----------KD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~-----------~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~ 64 (268)
-+.+++.|..-+..++.. .. +||++|||||+|+.++|+.++.+++.++.+... .....+..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 101 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKD 101 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHH
Confidence 456777777776665332 11 799999999999999999999999999887631 12345667
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||....
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHB
T ss_pred HHHHHHHcCCeEEEEECHHHhcc
Confidence 77665 3579999999999853
No 16
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.11 E-value=1.3e-10 Score=111.35 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHhhcCc----c--ccccCCCCHHHHHHHHHhhcC--CcEEEEeccccc---cC-hHHHHHHHHhc--
Q 024362 4 DFDVKKMIMDDLEMFLKRK----D--FHRRVGRGKSSLIAGMANFLN--FDVYDLELSALL---RG-NMELRNLLIAT-- 69 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~----~--~Y~~~GTGKTSl~~AlA~~l~--~~iy~l~ls~~~---~~-d~~L~~lf~~~-- 69 (268)
.++.|+.+..-++.+.... . +|||||||||+|+.|+|+.++ .+++.++.+... .. ...++.+|..+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~ 121 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG 121 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3455665544444333332 1 899999999999999999999 899999887632 11 13488899887
Q ss_pred ---CCCeeEEEeCCccchh
Q 024362 70 ---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 ---p~~~IiliEDID~~~~ 85 (268)
..+|||+|||||+.+.
T Consensus 122 ~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 122 LRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EEEEEEEEEEEEEEEEEEE
T ss_pred hhhcCCcEEEEechhhccc
Confidence 4689999999999986
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.00 E-value=1.8e-09 Score=105.86 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHhhcCc--------------cccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRK--------------DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~--------------~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~ 64 (268)
-++.|.+|. ++..|+... -.||++|||||+|++|||+.++.+++.++.++.. .....++.
T Consensus 36 ~~~~k~~l~-~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 36 AEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp CHHHHHHHH-HHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHH
Confidence 355666664 455555432 1689999999999999999999999999987631 12356788
Q ss_pred HHHhcC--CCeeEEEeCCccchh
Q 024362 65 LLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~p--~~~IiliEDID~~~~ 85 (268)
+|.... .+||++|||||..+.
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCC
T ss_pred HHHHHHhcCCCEEEEehHHHHHH
Confidence 888875 479999999999864
No 18
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.96 E-value=3.3e-08 Score=92.37 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhhcC-----------cc--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHH
Q 024362 3 VDFDVKKMIMDDLEMFLKR-----------KD--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRN 64 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~-----------~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~ 64 (268)
-.+.+++.|..-+...+.. .. +||++|||||+|+.|||..++.+++.++.+... .....++.
T Consensus 119 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 198 (389)
T 3vfd_A 119 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRA 198 (389)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHH
Confidence 3456677776666554431 11 799999999999999999999999999987621 23455677
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||.++.
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC-
T ss_pred HHHHHHhcCCeEEEEECchhhcc
Confidence 77655 3579999999999854
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.96 E-value=2.1e-09 Score=104.90 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhc-----------Ccc---ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLK-----------RKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~-----------~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
+.+++.|..-+...+. +.. +||++|||||+++.|||+.++.+++.++.+.. +.....++.+
T Consensus 210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~ 289 (489)
T 3hu3_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (489)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHH
Confidence 4556666666665522 222 79999999999999999999999999997652 1233567788
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..+|||+|||||....
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCB
T ss_pred HHHHHhcCCcEEEecchhhhcc
Confidence 8776 3579999999998865
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.96 E-value=4.3e-10 Score=98.82 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=48.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHHHHhc--CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~lf~~~--p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.|||+.++.+++.++.+... .+...++.+|..+ ..++||+|||||....
T Consensus 49 l~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 49 LVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp CBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc
Confidence 799999999999999999999999998876521 1223344555544 3579999999999865
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=9.6e-09 Score=89.79 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=50.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.+||+.++..++.++.... ......+..+|.... .+|++++||||..+.
T Consensus 54 l~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 54 LVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc
Confidence 78999999999999999999999998876541 112345778888864 479999999998764
No 22
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.88 E-value=7.4e-09 Score=95.02 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhhcCc-----------c--ccccCCCCHHHHHHHHHhhc-CCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRK-----------D--FHRRVGRGKSSLIAGMANFL-NFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~-----------~--~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-+++|+.|..-+...+... . +|||||||||+|+.|+|+.+ +.+++.++.++. +.+...++.
T Consensus 17 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~ 96 (322)
T 1xwi_A 17 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 96 (322)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHH
Confidence 3567777777776544322 1 68999999999999999999 999999998762 235577888
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||....
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGC
T ss_pred HHHHHHhcCCcEEEeecHHHhcc
Confidence 88765 4689999999999864
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.87 E-value=3.5e-09 Score=96.59 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCc-----------c--ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRK-----------D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELR 63 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~-----------~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~ 63 (268)
+--++.|+.|..-+...+... . +||+||||||+|+.|+|+.++.+++.++.+.. +.....++
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~ 100 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 100 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHH
Confidence 334667777777775544322 1 68999999999999999999999999997652 12345677
Q ss_pred HHHHhc--CCCeeEEEeCCccchh
Q 024362 64 NLLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 64 ~lf~~~--p~~~IiliEDID~~~~ 85 (268)
.+|..+ ..+|||+|||||....
T Consensus 101 ~~f~~a~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 101 QLFAMARENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHHHHHHHTSSEEEEEECGGGGSC
T ss_pred HHHHHHHhcCCeEEEechhhhhhc
Confidence 888765 3579999999999865
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.83 E-value=5.1e-10 Score=114.97 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=53.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
+||+||||||+|++|||+.++.+++.++.+.. +.....++.+|..+. .+|||||||||..+.
T Consensus 516 L~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp CBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh
Confidence 79999999999999999999999999987762 234577888998764 579999999999865
No 25
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.80 E-value=6e-09 Score=96.86 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhcCc-----------c--ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRK-----------D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLL 66 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~-----------~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf 66 (268)
+..|+.|..-+...+... . +||+||||||+|+.|+|+.++.+++.++.++. +.....++.+|
T Consensus 57 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f 136 (355)
T 2qp9_X 57 EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF 136 (355)
T ss_dssp GGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHH
Confidence 456666666665433221 1 79999999999999999999999999987652 23456778888
Q ss_pred HhcC--CCeeEEEeCCccchh
Q 024362 67 IATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 67 ~~~p--~~~IiliEDID~~~~ 85 (268)
..+. .+|||+|||||....
T Consensus 137 ~~a~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 137 AMARENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHHHHTSSEEEEEECGGGGTC
T ss_pred HHHHHcCCeEEEEechHhhcc
Confidence 7763 689999999999864
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.77 E-value=2.7e-08 Score=90.11 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhcCc----c--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEE
Q 024362 4 DFDVKKMIMDDLEMFLKRK----D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVV 77 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~----~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~Iili 77 (268)
.+..++.|..-+.....+. . +||++|||||+|+.++|..++.+++.++.+. ......+..++.....+++|+|
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vl~l 112 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM-IEKSGDLAAILTNLSEGDILFI 112 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG-CCSHHHHHHHHHTCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh-ccchhHHHHHHHhccCCCEEEE
Confidence 4556666666666664322 2 7999999999999999999999999999876 4566788899999999999999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
||||.+..
T Consensus 113 DEi~~l~~ 120 (338)
T 3pfi_A 113 DEIHRLSP 120 (338)
T ss_dssp ETGGGCCH
T ss_pred echhhcCH
Confidence 99998753
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.75 E-value=2.8e-08 Score=88.36 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=49.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHHHHhcC--CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNLLIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~lf~~~p--~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.+||+.++..++.++.... ......+..+|.... .+|++++||||..+.
T Consensus 78 l~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 78 LVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146 (278)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC
T ss_pred EECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc
Confidence 68999999999999999999999988876541 112245677888763 579999999998754
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.74 E-value=2.6e-08 Score=88.64 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHhhc----------C-cc--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-----cChHHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLK----------R-KD--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-----RGNMELRNL 65 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~----------~-~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-----~~d~~L~~l 65 (268)
.+..++.|..-+...+. + .. +||++|||||+|+.++|+.++.+++.++.+... .....++.+
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 105 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRAL 105 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHH
Confidence 45666777666655332 1 12 799999999999999999999999999987631 123445666
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..++||+|||||....
T Consensus 106 ~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 106 FAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp HHHHHHTCSEEEEEETGGGTSB
T ss_pred HHHHHHcCCcEEEeccHHHhcc
Confidence 6654 4689999999999865
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.70 E-value=3.4e-08 Score=91.60 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhhcCc-----------c--ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc-----ChHHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLKRK-----------D--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR-----GNMELRNL 65 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~~-----------~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~-----~d~~L~~l 65 (268)
.+..++.|..-+...+... . +||++|||||+|+.|||+.++.+++.++.+.... ....++.+
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 168 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL 168 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHH
Confidence 3566777777666543221 1 6899999999999999999999999999876321 23456777
Q ss_pred HHhc--CCCeeEEEeCCccchh
Q 024362 66 LIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~--p~~~IiliEDID~~~~ 85 (268)
|..+ ..++||+|||||....
T Consensus 169 ~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 169 FAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp HHHHHHTCSEEEEEETHHHHTB
T ss_pred HHHHHhcCCeEEEEeCchhhhc
Confidence 7655 4689999999998754
No 30
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.68 E-value=3.8e-08 Score=88.12 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHhhc---C-c--cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHh-cCCCeeEE
Q 024362 4 DFDVKKMIMDDLEMFLK---R-K--DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIA-TENKSLLV 76 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~---~-~--~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~-~p~~~Iil 76 (268)
.+..++.+..-+..+.. + . =+||++|||||+|+.++|..++.+++.++.+. ......+...|.. +..+++|+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~l~ 95 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPA-IEKPGDLAAILANSLEEGDILF 95 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTT-CCSHHHHHHHHTTTCCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-cCChHHHHHHHHHhccCCCEEE
Confidence 34555666666655542 1 1 27999999999999999999999999998876 4556778888887 78899999
Q ss_pred EeCCccchh
Q 024362 77 VEDIDCSIE 85 (268)
Q Consensus 77 iEDID~~~~ 85 (268)
|||||....
T Consensus 96 lDEi~~l~~ 104 (324)
T 1hqc_A 96 IDEIHRLSR 104 (324)
T ss_dssp ETTTTSCCH
T ss_pred EECCccccc
Confidence 999998764
No 31
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.66 E-value=3.8e-08 Score=94.29 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhhc----------C-cc--ccccCCCCHHHHHHHHHhhc-CCcEEEEecccc-----ccChHHHHH
Q 024362 4 DFDVKKMIMDDLEMFLK----------R-KD--FHRRVGRGKSSLIAGMANFL-NFDVYDLELSAL-----LRGNMELRN 64 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~----------~-~~--~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~ls~~-----~~~d~~L~~ 64 (268)
-+..|+.|..-+...+. + .. +|||||||||+|+.|||+.+ +.+++.++.++. +.+...++.
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 218 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN 218 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHH
Confidence 35667777766644322 1 11 79999999999999999999 999999988762 123455777
Q ss_pred HHHhc--CCCeeEEEeCCccchh
Q 024362 65 LLIAT--ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 65 lf~~~--p~~~IiliEDID~~~~ 85 (268)
+|..+ ..+|||+|||||....
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCC
T ss_pred HHHHHHHcCCeEEEEechHhhcc
Confidence 88765 4689999999999854
No 32
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.66 E-value=3.8e-08 Score=88.81 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHh----cC---CCeeEEE
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIA----TE---NKSLLVV 77 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~----~p---~~~Iili 77 (268)
++..+..++.... |||++|||||+++.++|+.++.+++.++.+. ...+.++.++.. .+ .++||+|
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~--~~~~~i~~~~~~~~~~~~~~~~~~vlii 111 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD--CKIDFVRGPLTNFASAASFDGRQKVIVI 111 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT--CCHHHHHTHHHHHHHBCCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc--cCHHHHHHHHHHHHhhcccCCCCeEEEE
Confidence 3455556665432 6788999999999999999999999999876 335566554433 33 6899999
Q ss_pred eCCccch
Q 024362 78 EDIDCSI 84 (268)
Q Consensus 78 EDID~~~ 84 (268)
||||...
T Consensus 112 DEi~~l~ 118 (324)
T 3u61_B 112 DEFDRSG 118 (324)
T ss_dssp ESCCCGG
T ss_pred ECCcccC
Confidence 9999986
No 33
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.65 E-value=2.8e-08 Score=91.72 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=50.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccC-------hHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRG-------NMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~-------d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
+|||||||||+++.+||..++.+++.++.+..... ...+..+|...+ .+|||+|||||.+..
T Consensus 56 l~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~ 130 (363)
T 3hws_A 56 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR 130 (363)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc
Confidence 79999999999999999999999999998763211 345677777653 478999999998764
No 34
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=7.7e-08 Score=77.80 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccccc-------ChHHHHHHHH
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALLR-------GNMELRNLLI 67 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~~-------~d~~L~~lf~ 67 (268)
..+..+..++.... .||++|||||+|+.++|..+ +.+++.++++.... ....+..++.
T Consensus 29 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 29 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHH
Confidence 34455555555432 79999999999999999997 78999988765211 1234556655
Q ss_pred h---cCCCeeEEEeCCccchh
Q 024362 68 A---TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 ~---~p~~~IiliEDID~~~~ 85 (268)
. ...++||+|||||.+..
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT
T ss_pred HHhhcCCCeEEEEeCHHHHhc
Confidence 4 35688999999999864
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.59 E-value=8.4e-08 Score=85.48 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHhh------------cCc----cccccCCCCHHHHHHHHHhhcCC-------cEEEEeccccc---
Q 024362 3 VDFDVKKMIMDDLEMFL------------KRK----DFHRRVGRGKSSLIAGMANFLNF-------DVYDLELSALL--- 56 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl------------~~~----~~Y~~~GTGKTSl~~AlA~~l~~-------~iy~l~ls~~~--- 56 (268)
--+..|+.|..-+..+. ... =+||+||||||+++.++|..++. +++.++.+...
T Consensus 35 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 114 (309)
T 3syl_A 35 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY 114 (309)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc
Confidence 34566777766666543 111 17999999999999999999843 78888876521
Q ss_pred --cChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 57 --RGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 57 --~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
.....+..+|... .++||+|||||..+.
T Consensus 115 ~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 115 IGHTAPKTKEVLKRA-MGGVLFIDEAYYLYR 144 (309)
T ss_dssp TTCHHHHHHHHHHHH-TTSEEEEETGGGSCC
T ss_pred ccccHHHHHHHHHhc-CCCEEEEEChhhhcc
Confidence 2335567777776 468999999998753
No 36
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.58 E-value=3.2e-08 Score=80.05 Aligned_cols=77 Identities=14% Similarity=-0.019 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCc
Q 024362 5 FDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDID 81 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID 81 (268)
....+.+.+.+..+..... +||++|||||+++.+|+...+ +++.++.+. +.+..+..+|.... .++|+|||||
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~--~~~~~~~~~~~~a~-~~~l~lDei~ 85 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE--YLIDMPMELLQKAE-GGVLYVGDIA 85 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT--HHHHCHHHHHHHTT-TSEEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh--CChHhhhhHHHhCC-CCeEEEeChH
Confidence 3456677788888776654 799999999999999999988 888887765 33333566666554 6799999999
Q ss_pred cchh
Q 024362 82 CSIE 85 (268)
Q Consensus 82 ~~~~ 85 (268)
....
T Consensus 86 ~l~~ 89 (143)
T 3co5_A 86 QYSR 89 (143)
T ss_dssp TCCH
T ss_pred HCCH
Confidence 9864
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=1.1e-07 Score=92.61 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhhcC----------------cc--ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKR----------------KD--FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELR 63 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~----------------~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~ 63 (268)
+-.+..++.|...+..|... .. +||++|||||+++.++|..+|++++.++.++ ..+...+.
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~-~~~~~~~~ 120 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD-VRSKTLLN 120 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS-CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC-cchHHHHH
Confidence 34556677777777665421 12 7999999999999999999999999999877 33433333
Q ss_pred HHHH-------------hc-------CCCeeEEEeCCccchh
Q 024362 64 NLLI-------------AT-------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 64 ~lf~-------------~~-------p~~~IiliEDID~~~~ 85 (268)
..+. .+ ..++||+|||||....
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 121 AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred HHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 3332 22 4689999999999864
No 38
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.57 E-value=1.1e-07 Score=87.22 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCc----------cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeC
Q 024362 10 MIMDDLEMFLKRK----------DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVED 79 (268)
Q Consensus 10 ~i~~Di~~Fl~~~----------~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliED 79 (268)
.++.++..++... -+|||+|||||||+.+||+.++.++...+.+. .....++..++..+..++|++|||
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~-~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV-LVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT-CCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH-hcCHHHHHHHHHHccCCCEEEEcc
Confidence 4566677666431 27999999999999999999999988877655 345567778887787889999999
Q ss_pred Cccchh
Q 024362 80 IDCSIE 85 (268)
Q Consensus 80 ID~~~~ 85 (268)
||....
T Consensus 111 ~~~l~~ 116 (334)
T 1in4_A 111 IHRLNK 116 (334)
T ss_dssp GGGCCH
T ss_pred hhhcCH
Confidence 998754
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.57 E-value=1.3e-07 Score=83.56 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=50.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc-------ChHHHHHHHHhcC-------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR-------GNMELRNLLIATE-------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~-------~d~~L~~lf~~~p-------~~~IiliEDID~~~~ 85 (268)
+||++|||||+++.++|..++.+++.++.+.... ....+..++...+ .++||+|||||.+..
T Consensus 55 l~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 55 MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 7999999999999999999999999998876211 1345777777553 478999999999864
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.54 E-value=1.4e-07 Score=76.31 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeC
Q 024362 6 DVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVED 79 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliED 79 (268)
...+.+...++.+..... +||++|||||+++.+|+... +.+++ ++.+. ..++..+..+|... ..++++|||
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~-~~~~~~~~~~~~~a-~~g~l~lde 84 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT-PDNAPQLNDFIALA-QGGTLVLSH 84 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC-TTTSSCHHHHHHHH-TTSCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC-CCcchhhhcHHHHc-CCcEEEEcC
Confidence 445667777777765554 79999999999999999987 77888 88776 33334455566555 457899999
Q ss_pred Cccchh
Q 024362 80 IDCSIE 85 (268)
Q Consensus 80 ID~~~~ 85 (268)
||....
T Consensus 85 i~~l~~ 90 (145)
T 3n70_A 85 PEHLTR 90 (145)
T ss_dssp GGGSCH
T ss_pred hHHCCH
Confidence 998864
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.53 E-value=2.4e-07 Score=76.57 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccccChHHHHHHHHhc--------CC
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALLRGNMELRNLLIAT--------EN 71 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~~~d~~L~~lf~~~--------p~ 71 (268)
..+..+..++.... +||++|||||+|+.++|..+ ...++.++.+. ..+...+...+... ..
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-ERGIDVVRHKIKEFARTAPIGGAP 102 (226)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC-TTCHHHHHHHHHHHHTSCCSTTCS
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc-ccChHHHHHHHHHHhcccCCCccC
Confidence 45566667776542 68999999999999999986 45577777655 33444444443332 46
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
++||+|||+|....
T Consensus 103 ~~vliiDe~~~l~~ 116 (226)
T 2chg_A 103 FKIIFLDEADALTA 116 (226)
T ss_dssp CEEEEEETGGGSCH
T ss_pred ceEEEEeChhhcCH
Confidence 89999999999754
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.51 E-value=9.8e-08 Score=84.30 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=49.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecccccc--Ch----HHHHHHHHhc--CCCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLR--GN----MELRNLLIAT--ENKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~--~d----~~L~~lf~~~--p~~~IiliEDID~~~ 84 (268)
+||++|||||+|+.++|..++.+++.++.++... .. ..++.+|..+ ..++||+|||||..+
T Consensus 69 l~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 69 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLL 137 (272)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHT
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhh
Confidence 7999999999999999999999999998765221 11 4567777764 458999999999874
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.46 E-value=1.4e-07 Score=76.46 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-------cChHHHHHHHHh
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-------RGNMELRNLLIA 68 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-------~~d~~L~~lf~~ 68 (268)
.+..+..++.... +||++|||||+|+.++|..+ +.+++.++++... .....+..++..
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKE 109 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHH
Confidence 4455555555432 79999999999999999998 8889988876521 111235555554
Q ss_pred c---CCCeeEEEeCCccchh
Q 024362 69 T---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ~---p~~~IiliEDID~~~~ 85 (268)
+ ..++||+|||||.+..
T Consensus 110 ~~~~~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 110 VQDAEGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHTTTSEEEEETTGGGGSS
T ss_pred HHhcCCceEEEEeCHHHhcc
Confidence 4 4578999999999863
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.46 E-value=2.1e-07 Score=89.59 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=49.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhc------CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIAT------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~------p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.+||+.++.+++.++... .+-..++.+|..+ ..++||+|||||.+..
T Consensus 55 L~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 55 LWGPPGTGKTTLAEVIARYANADVERISAVT--SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCEEEEEETTT--CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeEEEEecc--CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH
Confidence 7999999999999999999999999998765 4556677766654 3689999999998754
No 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.43 E-value=3.2e-07 Score=84.92 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=48.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc---c----ChHHHHHHHHhcC------CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL---R----GNMELRNLLIATE------NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~---~----~d~~L~~lf~~~p------~~~IiliEDID~~~~ 85 (268)
+||++|||||+++.+||..++.+++.++.+... . -...+..++...+ .++||+|||||.+..
T Consensus 77 l~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 799999999999999999999999999876621 1 1234666666554 579999999999864
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=4.1e-06 Score=76.37 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHHHHHHHHhc--------C
Q 024362 9 KMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNMELRNLLIAT--------E 70 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~L~~lf~~~--------p 70 (268)
+.+++.+..++.... +|||+|||||+++.++|+.+. ..+..++.++ ...-+.++.++..+ .
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~-~~~~~~ir~~i~~~~~~~~~~~~ 109 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-DRGIDVVRNQIKDFASTRQIFSK 109 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS-CCSHHHHHTHHHHHHHBCCSSSC
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc-cccHHHHHHHHHHHHhhcccCCC
Confidence 456777888877654 689999999999999999973 3466666654 22334454444321 2
Q ss_pred CCeeEEEeCCccchh
Q 024362 71 NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 ~~~IiliEDID~~~~ 85 (268)
.+.|++|||+|....
T Consensus 110 ~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 110 GFKLIILDEADAMTN 124 (340)
T ss_dssp SCEEEEETTGGGSCH
T ss_pred CceEEEEeCCCCCCH
Confidence 378999999998753
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=1.3e-07 Score=79.96 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCC
Q 024362 9 KMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMELRNLLIATENKSLLVVEDI 80 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDI 80 (268)
+.++..+..+..... +||++|||||+|+.++|..++ +.++.++.+... ..+...+..+..+++|+|||+
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~vliiDe~ 113 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA---SISTALLEGLEQFDLICIDDV 113 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG---GSCGGGGTTGGGSSEEEEETG
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH---HHHHHHHHhccCCCEEEEecc
Confidence 456677787776421 799999999999999999875 788888877621 112334455567899999999
Q ss_pred ccchh
Q 024362 81 DCSIE 85 (268)
Q Consensus 81 D~~~~ 85 (268)
|....
T Consensus 114 ~~~~~ 118 (242)
T 3bos_A 114 DAVAG 118 (242)
T ss_dssp GGGTT
T ss_pred ccccC
Confidence 98754
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.4e-07 Score=83.59 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccc----------------
Q 024362 7 VKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSAL---------------- 55 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~---------------- 55 (268)
+.+.|..-|...+.... .||+||||||+++.+++..+ ++.++.+|....
T Consensus 28 E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g 107 (318)
T 3te6_A 28 DFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107 (318)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 33444445555554332 78999999999999999999 345555553220
Q ss_pred -----ccChHHHHHHHHhc----CCCeeEEEeCCccch
Q 024362 56 -----LRGNMELRNLLIAT----ENKSLLVVEDIDCSI 84 (268)
Q Consensus 56 -----~~~d~~L~~lf~~~----p~~~IiliEDID~~~ 84 (268)
......|..+|..+ ..++||+|||||...
T Consensus 108 ~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 108 ENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred CCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 11234678888876 347899999999986
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=1.2e-07 Score=78.58 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhcCc-----c---ccccCCCCHHHHHHHHHhhc----CCcEEEEeccccc------cChHHHHHHHHh
Q 024362 7 VKKMIMDDLEMFLKRK-----D---FHRRVGRGKSSLIAGMANFL----NFDVYDLELSALL------RGNMELRNLLIA 68 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~-----~---~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~~~------~~d~~L~~lf~~ 68 (268)
..+.++.-+..|+.+- . +||++|||||+|+.+||+.+ |..++.++..+.. .+......++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT 97 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH
Confidence 4556678888887542 1 78999999999999999988 7777777765411 000011134455
Q ss_pred cCCCeeEEEeCCccch
Q 024362 69 TENKSLLVVEDIDCSI 84 (268)
Q Consensus 69 ~p~~~IiliEDID~~~ 84 (268)
+..+.+++|||+++.+
T Consensus 98 ~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSER 113 (180)
T ss_dssp HHTCSEEEEETCSSSC
T ss_pred hcCCCEEEEeCCCCCc
Confidence 5678899999999754
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.37 E-value=1.8e-07 Score=78.62 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcCc------c---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc------cChHHHHHHHHhc
Q 024362 8 KKMIMDDLEMFLKRK------D---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL------RGNMELRNLLIAT 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~------~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~------~~d~~L~~lf~~~ 69 (268)
...++..+..|+... . +||++|||||+|+.+||+.+ +..++.++.+... ..+..+..++..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI 113 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh
Confidence 445666677776532 2 68999999999999999988 7788887765410 1111123334444
Q ss_pred CCCeeEEEeCCccch
Q 024362 70 ENKSLLVVEDIDCSI 84 (268)
Q Consensus 70 p~~~IiliEDID~~~ 84 (268)
....+|+|||||...
T Consensus 114 ~~~~~lilDei~~~~ 128 (202)
T 2w58_A 114 KKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHSSEEEEEEECCC-
T ss_pred cCCCEEEEcCCCCCc
Confidence 445699999998753
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.36 E-value=1.4e-06 Score=72.49 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=45.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHHHHHHHHhcC------CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNMELRNLLIATE------NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~L~~lf~~~p------~~~ 73 (268)
.||++|||||+|+.++|..++. +++.++... ......++.++..+. .++
T Consensus 50 l~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFK 128 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSSSE
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCCce
Confidence 7899999999999999998854 344444433 233456778887754 478
Q ss_pred eEEEeCCccch
Q 024362 74 LLVVEDIDCSI 84 (268)
Q Consensus 74 IiliEDID~~~ 84 (268)
+|+|||+|...
T Consensus 129 vlviDe~~~l~ 139 (250)
T 1njg_A 129 VYLIDEVHMLS 139 (250)
T ss_dssp EEEEETGGGSC
T ss_pred EEEEECccccc
Confidence 99999999864
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.34 E-value=1.6e-06 Score=75.95 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHHH-HHHHh---------
Q 024362 5 FDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMELR-NLLIA--------- 68 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L~-~lf~~--------- 68 (268)
......++.-+..+..... +||++|||||+++.+|+..+. .+++.++.+. ...+.+. .+|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~g~~~~~~~g~~ 89 (265)
T 2bjv_A 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA--LNENLLDSELFGHEAGAFTGAQ 89 (265)
T ss_dssp CHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG--SCHHHHHHHHHCCC--------
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC--CChhHHHHHhcCCccccccccc
Confidence 3455667777777765543 799999999999999999885 6799998876 4444443 23321
Q ss_pred --------cCCCeeEEEeCCccchh
Q 024362 69 --------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 --------~p~~~IiliEDID~~~~ 85 (268)
....++|+|||||....
T Consensus 90 ~~~~~~l~~a~~~~l~lDEi~~l~~ 114 (265)
T 2bjv_A 90 KRHPGRFERADGGTLFLDELATAPM 114 (265)
T ss_dssp -CCCCHHHHTTTSEEEEESGGGSCH
T ss_pred ccccchhhhcCCcEEEEechHhcCH
Confidence 12467999999998754
No 53
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.34 E-value=2.2e-07 Score=89.86 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=44.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccc-------cChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALL-------RGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~-------~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||+||||||+++.+||+.++++++.++.+... -....++.+|.... .++.+|++|....
T Consensus 55 l~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~--~~~~~De~d~~~~ 121 (444)
T 1g41_A 55 MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAM--KLVRQQEIAKNRA 121 (444)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHH--HHHHHHHHHSCC-
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHH--hcchhhhhhhhhc
Confidence 699999999999999999999999999976521 13466777777642 2334677776543
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.32 E-value=8.4e-07 Score=80.34 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=44.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---------CCcEEEEecccc---------------------ccChHH-HHHHHHhc---
Q 024362 24 FHRRVGRGKSSLIAGMANFL---------NFDVYDLELSAL---------------------LRGNME-LRNLLIAT--- 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~---------------------~~~d~~-L~~lf~~~--- 69 (268)
.||++|||||+|+.++++.+ ++.++.++.... +.+... +..++..+
T Consensus 49 l~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 128 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRL 128 (387)
T ss_dssp ECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 79999999999999999998 778888875431 011222 33444333
Q ss_pred CCCeeEEEeCCccchh
Q 024362 70 ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 p~~~IiliEDID~~~~ 85 (268)
..++||+|||||.+..
T Consensus 129 ~~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 129 RGIYIIVLDEIDFLPK 144 (387)
T ss_dssp CSEEEEEEETTTHHHH
T ss_pred CCeEEEEEccHhhhcc
Confidence 4578999999999864
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=1.2e-06 Score=79.74 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-----------CCcEEEEeccccc------------
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-----------NFDVYDLELSALL------------ 56 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-----------~~~iy~l~ls~~~------------ 56 (268)
+...+.|..-+..++.... .||++|||||+|+.++|+.+ ++.++.++.....
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 105 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAG 105 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHH
Confidence 3455666666666655432 79999999999999999998 8999998855411
Q ss_pred -----------cC-hHHHHHHHHhcCC-CeeEEEeCCccchh
Q 024362 57 -----------RG-NMELRNLLIATEN-KSLLVVEDIDCSIE 85 (268)
Q Consensus 57 -----------~~-d~~L~~lf~~~p~-~~IiliEDID~~~~ 85 (268)
.+ ..-+..++..+.. ++||+|||||.+..
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~ 147 (384)
T 2qby_B 106 KLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK 147 (384)
T ss_dssp HHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc
Confidence 01 1223444444433 44999999999764
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.25 E-value=2.5e-06 Score=75.81 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcC-------c---cccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHH----------
Q 024362 5 FDVKKMIMDDLEMFLKR-------K---DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNME---------- 61 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~-------~---~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~---------- 61 (268)
...++.|..-+...... . -+||++|||||+++.+||+.+ +.+++.++.+. ......
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~ 101 (311)
T 4fcw_A 23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE-YMEKHAVSRLIGAPPG 101 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG-CCSTTHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc-ccccccHHHhcCCCCc
Confidence 44556666666666421 1 279999999999999999998 56689888876 222222
Q ss_pred ---------HHHHHHhcCCCeeEEEeCCccchh
Q 024362 62 ---------LRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 62 ---------L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+...+... +.+||+|||||.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~-~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 102 YVGYEEGGQLTEAVRRR-PYSVILFDAIEKAHP 133 (311)
T ss_dssp STTTTTCCHHHHHHHHC-SSEEEEEETGGGSCH
T ss_pred cccccccchHHHHHHhC-CCeEEEEeChhhcCH
Confidence 22333332 368999999998754
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=3.7e-07 Score=82.53 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=45.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccCh-------HHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGN-------MELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d-------~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.+||+.+ +.+++.++.... ..+ ..+..+......++||+|||||....
T Consensus 42 l~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 42 IYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC
Confidence 79999999999999999999 899999987652 110 01122222334588999999999763
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.23 E-value=7.1e-07 Score=79.02 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccccCh----HHHHHHHHhc----CC
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALLRGN----MELRNLLIAT----EN 71 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~~~d----~~L~~lf~~~----p~ 71 (268)
.++..+..++.... +||++|||||+++.++|..+ +.+++.++.++. .+. ..+..+.... ..
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (319)
T 2chq_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE-RGIDVVRHKIKEFARTAPIGGAP 102 (319)
T ss_dssp HHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST-TCTTTSSHHHHHHHHSCCSSSCC
T ss_pred HHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc-cChHHHHHHHHHHHhcCCCCCCC
Confidence 45556666766543 79999999999999999987 456778887652 122 2223333222 34
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
+.||+|||+|....
T Consensus 103 ~~vliiDe~~~l~~ 116 (319)
T 2chq_A 103 FKIIFLDEADALTA 116 (319)
T ss_dssp CEEEEEETGGGSCH
T ss_pred ceEEEEeCCCcCCH
Confidence 88999999998753
No 59
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.20 E-value=9.9e-07 Score=90.62 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhcCCcEEEEecccc-----ccChHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFLNFDVYDLELSAL-----LRGNMELRNL 65 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~-----~~~d~~L~~l 65 (268)
+.+++.|..-+..++...+ +||++|||||+|+.|||+.++.+++.++.++. ......++.+
T Consensus 210 ~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~v 289 (806)
T 1ypw_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289 (806)
T ss_dssp SGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHH
Confidence 5677888888887665432 58999999999999999999999999986552 1233567788
Q ss_pred HHhcC--CCeeEEEeCCccchh
Q 024362 66 LIATE--NKSLLVVEDIDCSIE 85 (268)
Q Consensus 66 f~~~p--~~~IiliEDID~~~~ 85 (268)
|..+. .+||++|||||....
T Consensus 290 f~~a~~~~p~il~iDEid~l~~ 311 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAP 311 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSC
T ss_pred HHHHHhcCCcEEEeccHHHhhh
Confidence 87753 589999999998865
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=1.3e-06 Score=77.38 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccccChHHHHHHHHhc--------C-
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALLRGNMELRNLLIAT--------E- 70 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~~~d~~L~~lf~~~--------p- 70 (268)
.+++.+..++.... +||++|||||+++.++|..+ +.+++.++.++ ..+-+.++.++..+ .
T Consensus 28 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 106 (323)
T 1sxj_B 28 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-DRGIDVVRNQIKHFAQKKLHLPPG 106 (323)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-CCSHHHHHTHHHHHHHBCCCCCTT
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-ccChHHHHHHHHHHHhccccCCCC
Confidence 34455666665532 79999999999999999986 45677777665 33445666655532 2
Q ss_pred CCeeEEEeCCccchh
Q 024362 71 NKSLLVVEDIDCSIE 85 (268)
Q Consensus 71 ~~~IiliEDID~~~~ 85 (268)
+++||+|||+|....
T Consensus 107 ~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 107 KHKIVILDEADSMTA 121 (323)
T ss_dssp CCEEEEEESGGGSCH
T ss_pred CceEEEEECcccCCH
Confidence 388999999998753
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=6.6e-06 Score=74.72 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcC---c--c--ccccCCCCHHHHHHHHHhhc----CCcEEEEeccccccC---------------
Q 024362 5 FDVKKMIMDDLEMFLKR---K--D--FHRRVGRGKSSLIAGMANFL----NFDVYDLELSALLRG--------------- 58 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~---~--~--~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~~~~~--------------- 58 (268)
+...+.|..-+..++.. . . .||++|||||+|+.++++.+ ++.++.++.+. ..+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l~~~ 101 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARSLNIP 101 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHHhCcc
Confidence 34455566666665433 2 2 68999999999999999999 67888888544 111
Q ss_pred -------hH----HHHHHHHhcCCCeeEEEeCCccc
Q 024362 59 -------NM----ELRNLLIATENKSLLVVEDIDCS 83 (268)
Q Consensus 59 -------d~----~L~~lf~~~p~~~IiliEDID~~ 83 (268)
.. .+...+.....++||+|||+|..
T Consensus 102 ~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 102 FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 11 12223333456889999999987
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.17 E-value=1.5e-06 Score=78.40 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=44.9
Q ss_pred ccccCCCCHHHHHHHHHhhc------CCcEEEEecccc---------------------ccChHH-HHH---HHHhcCCC
Q 024362 24 FHRRVGRGKSSLIAGMANFL------NFDVYDLELSAL---------------------LRGNME-LRN---LLIATENK 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l------~~~iy~l~ls~~---------------------~~~d~~-L~~---lf~~~p~~ 72 (268)
.||++|||||+|+.++|+.+ +..++.++.... ..+... +.. .+.....+
T Consensus 50 i~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 129 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQ 129 (386)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 79999999999999999999 888888885421 111222 223 33333458
Q ss_pred eeEEEeCCccchh
Q 024362 73 SLLVVEDIDCSIE 85 (268)
Q Consensus 73 ~IiliEDID~~~~ 85 (268)
+||+|||+|.+..
T Consensus 130 ~vlilDE~~~l~~ 142 (386)
T 2qby_A 130 VVIVLDEIDAFVK 142 (386)
T ss_dssp EEEEEETHHHHHH
T ss_pred EEEEEcChhhhhc
Confidence 9999999998763
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=1.1e-06 Score=79.32 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC------CcEEEEeccccccChHHHHHHH---Hh--------
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN------FDVYDLELSALLRGNMELRNLL---IA-------- 68 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~------~~iy~l~ls~~~~~d~~L~~lf---~~-------- 68 (268)
+++.+..++.... +||++|||||+++.++|+.++ ..+..++.++ ...-..++..+ ..
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD-ERGISIVREKVKNFARLTVSKPSK 123 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS-CCCHHHHTTHHHHHHHSCCCCCCT
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc-ccchHHHHHHHHHHhhhcccccch
Confidence 4556667776542 799999999999999999865 3577777655 22233333222 21
Q ss_pred -------cCCCeeEEEeCCccchh
Q 024362 69 -------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 69 -------~p~~~IiliEDID~~~~ 85 (268)
.+.+.||+|||||....
T Consensus 124 ~~~~~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 124 HDLENYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp THHHHSCCCSCEEEEETTGGGSCH
T ss_pred hhcccCCCCCceEEEEECCCccCH
Confidence 24567999999998754
No 64
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.16 E-value=1e-06 Score=77.60 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCc--c----ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccc
Q 024362 10 MIMDDLEMFLKRK--D----FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCS 83 (268)
Q Consensus 10 ~i~~Di~~Fl~~~--~----~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~ 83 (268)
..+..++.|++.. . +|||||||||++|.|||+.++-.++. ..+. .+. ..+..++...||+|||+|..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~--fans-~s~----f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS--FVNS-TSH----FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC--CCCS-SSC----GGGGGGTTCSSEEEEEECHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee--EEec-cch----hhhcccCCCCEEEEECCCch
Confidence 3578888898863 1 79999999999999999999765433 2210 110 11345566779999999975
Q ss_pred h
Q 024362 84 I 84 (268)
Q Consensus 84 ~ 84 (268)
.
T Consensus 116 ~ 116 (212)
T 1tue_A 116 C 116 (212)
T ss_dssp H
T ss_pred h
Confidence 3
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.16 E-value=5.9e-06 Score=83.39 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhc-------Cc---cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccC----------------
Q 024362 5 FDVKKMIMDDLEMFLK-------RK---DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRG---------------- 58 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~-------~~---~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~---------------- 58 (268)
+..++.|..-+..... +. =+||++|||||+++.+||..++.+++.++.+.. +.
T Consensus 464 ~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~-~~~~~~~~l~g~~~g~~g 542 (758)
T 1r6b_X 464 DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY-MERHTVSRLIGAPPGYVG 542 (758)
T ss_dssp HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC-SSSSCCSSSCCCCSCSHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh-cchhhHhhhcCCCCCCcC
Confidence 4455555555555432 11 178999999999999999999999999998872 21
Q ss_pred ---hHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 59 ---NMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 59 ---d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
...|...+...| .+||||||||.+..
T Consensus 543 ~~~~~~l~~~~~~~~-~~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 543 FDQGGLLTDAVIKHP-HAVLLLDEIEKAHP 571 (758)
T ss_dssp HHHTTHHHHHHHHCS-SEEEEEETGGGSCH
T ss_pred ccccchHHHHHHhCC-CcEEEEeCccccCH
Confidence 123455555544 89999999998753
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.15 E-value=3.1e-06 Score=76.80 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=44.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCC------------------------cEEEEeccccccChHHHHHHHHhcC------CCe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF------------------------DVYDLELSALLRGNMELRNLLIATE------NKS 73 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~------------------------~iy~l~ls~~~~~d~~L~~lf~~~p------~~~ 73 (268)
+||++|||||+++.++|..++. +++.++.+. ....+.++.++..+. .+.
T Consensus 43 l~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 121 (373)
T 1jr3_A 43 FSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFK 121 (373)
T ss_dssp EESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-SCCSSCHHHHHHHTTSCCSSSSSE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc-cCCHHHHHHHHHHHhhccccCCeE
Confidence 6999999999999999998865 455555443 222345666666543 478
Q ss_pred eEEEeCCccchh
Q 024362 74 LLVVEDIDCSIE 85 (268)
Q Consensus 74 IiliEDID~~~~ 85 (268)
||+|||+|....
T Consensus 122 vliiDe~~~l~~ 133 (373)
T 1jr3_A 122 VYLIDEVHMLSR 133 (373)
T ss_dssp EEEEECGGGSCH
T ss_pred EEEEECcchhcH
Confidence 999999998753
No 67
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.14 E-value=9.6e-07 Score=79.90 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=43.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHH--HH-------hcCC---CeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNL--LI-------ATEN---KSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~l--f~-------~~p~---~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.++|+.++.+++.++.+. ..+..++... +. -.+. .+|++|||||.+..
T Consensus 51 l~G~pGtGKT~la~~la~~~~~~~~~i~~~~-~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~ 123 (331)
T 2r44_A 51 LEGVPGLAKTLSVNTLAKTMDLDFHRIQFTP-DLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA 123 (331)
T ss_dssp EESCCCHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeEEEecCC-CCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCH
Confidence 7999999999999999999999999998754 3333332110 00 0011 37999999998754
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.13 E-value=3.3e-06 Score=86.83 Aligned_cols=76 Identities=16% Similarity=0.350 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccccc-------ChHHHHHHHH
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALLR-------GNMELRNLLI 67 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~~-------~d~~L~~lf~ 67 (268)
..+..+..++.... +||+||||||+++.++|+.+ +..++.++++.... ....+..+|.
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~ 256 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQ 256 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHH
Confidence 44455556665542 79999999999999999998 89999999876321 1245777777
Q ss_pred hc---CCCeeEEEeCCccchh
Q 024362 68 AT---ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 ~~---p~~~IiliEDID~~~~ 85 (268)
.+ +.++||+|||||....
T Consensus 257 ~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 257 EVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HHHTTCSSEEEEECCC-----
T ss_pred HHHhcCCCeEEEEecHHHHhc
Confidence 66 4689999999999763
No 69
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.9e-06 Score=76.51 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccccccChHH----HHHHHHhc----CC
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLRGNME----LRNLLIAT----EN 71 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~~d~~----L~~lf~~~----p~ 71 (268)
.++..+..++.... +||++|||||+++.++|..++ .+++.++.++ ..+.+. +....... ..
T Consensus 32 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 110 (327)
T 1iqp_A 32 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-ERGINVIREKVKEFARTKPIGGAS 110 (327)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-HHHHHTTHHHHHHHHHSCCGGGCS
T ss_pred HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-cCchHHHHHHHHHHHhhCCcCCCC
Confidence 34445555555432 799999999999999999863 3466666554 111122 23333222 35
Q ss_pred CeeEEEeCCccchh
Q 024362 72 KSLLVVEDIDCSIE 85 (268)
Q Consensus 72 ~~IiliEDID~~~~ 85 (268)
++||+|||+|....
T Consensus 111 ~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 111 FKIIFLDEADALTQ 124 (327)
T ss_dssp CEEEEEETGGGSCH
T ss_pred CeEEEEeCCCcCCH
Confidence 88999999998753
No 70
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.12 E-value=1.1e-06 Score=80.25 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcC------cc--ccccCCCCHHHHHHHHHhhcC----CcEEEEecccc------ccChHHHHHHHHhc
Q 024362 8 KKMIMDDLEMFLKR------KD--FHRRVGRGKSSLIAGMANFLN----FDVYDLELSAL------LRGNMELRNLLIAT 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~------~~--~Y~~~GTGKTSl~~AlA~~l~----~~iy~l~ls~~------~~~d~~L~~lf~~~ 69 (268)
+..++..+..|+.. .. +||++|||||+|+.|||+.+. ..++.++.+.. ...+..+..++..+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 212 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV 212 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh
Confidence 34566677777763 22 799999999999999998665 78887776541 11222233333444
Q ss_pred CCCeeEEEeCCccc
Q 024362 70 ENKSLLVVEDIDCS 83 (268)
Q Consensus 70 p~~~IiliEDID~~ 83 (268)
....+|+||||+..
T Consensus 213 ~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 213 KNVPVLILDDIGAE 226 (308)
T ss_dssp HTSSEEEEETCCC-
T ss_pred cCCCEEEEcCCCCC
Confidence 45669999999764
No 71
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.11 E-value=2.9e-06 Score=77.31 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCC--cEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF--DVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~--~iy~l~ 51 (268)
+|||||||||+|+.++|..++. +++.++
T Consensus 75 l~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 75 IAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp EEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 7999999999999999999986 555555
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.08 E-value=1.5e-06 Score=83.21 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=45.6
Q ss_pred ccccCCCCHHHHHHHHHhhc-----CCcEEEEeccccccCh-------HHHHHHHHhcC-CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFL-----NFDVYDLELSALLRGN-------MELRNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~~~~~d-------~~L~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.|||+.+ +..++.++.... .++ ..+..+..... .++|+||||||....
T Consensus 135 l~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 135 IYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF-LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH-HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH-HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 79999999999999999998 889999887652 110 11122333445 789999999998764
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=8.6e-06 Score=82.16 Aligned_cols=75 Identities=24% Similarity=0.420 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc-------cChHHHHHHHHh
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL-------RGNMELRNLLIA 68 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~-------~~d~~L~~lf~~ 68 (268)
.+..+...+.... +||++|||||+++.++|..+ +..++.++++... .....++.+|..
T Consensus 194 ~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~ 273 (758)
T 1r6b_X 194 ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ 273 (758)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHH
Confidence 3445556665542 89999999999999999987 7788888876522 123567888887
Q ss_pred cCC--CeeEEEeCCccchh
Q 024362 69 TEN--KSLLVVEDIDCSIE 85 (268)
Q Consensus 69 ~p~--~~IiliEDID~~~~ 85 (268)
+.. ++||+|||||....
T Consensus 274 ~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 274 LEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp HSSSSCEEEEETTTTTTTT
T ss_pred HHhcCCeEEEEechHHHhh
Confidence 754 79999999998753
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=1.5e-05 Score=72.96 Aligned_cols=203 Identities=14% Similarity=0.022 Sum_probs=105.3
Q ss_pred HHHHHHHhhcCcc------ccccCCCCHHHHHHHHHhhcC------------------------CcEEEEecc--ccccC
Q 024362 11 IMDDLEMFLKRKD------FHRRVGRGKSSLIAGMANFLN------------------------FDVYDLELS--ALLRG 58 (268)
Q Consensus 11 i~~Di~~Fl~~~~------~Y~~~GTGKTSl~~AlA~~l~------------------------~~iy~l~ls--~~~~~ 58 (268)
+++.+...+.... +||++|||||+++.++|..+. .|++.++.. .....
T Consensus 10 ~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~ 89 (334)
T 1a5t_A 10 DFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG 89 (334)
T ss_dssp HHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBC
T ss_pred HHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCC
Confidence 3445555554432 799999999999999999875 467777764 22355
Q ss_pred hHHHHHHHHhc---C---CCeeEEEeCCccchhhh-hhhhhhcCCCCceee----eeecccCCCCccccccccccccccC
Q 024362 59 NMELRNLLIAT---E---NKSLLVVEDIDCSIELQ-NRHAQALAVNPMVSN----MNYTARPGINQGPQVGSKCWAPTTL 127 (268)
Q Consensus 59 d~~L~~lf~~~---p---~~~IiliEDID~~~~~~-~R~~~~~~~~~~~vT----LN~kiRPGRvD~~I~~f~~~a~~y~ 127 (268)
-+.++.++..+ | .+.||+|||+|...... +.--.--+.....+. .|. |.++.-.|...+....+-.
T Consensus 90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~---~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 90 VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE---PERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC---GGGSCHHHHTTSEEEECCC
T ss_pred HHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC---hHhCcHHHhhcceeeeCCC
Confidence 56777877765 2 47899999999875311 000000011111111 332 2222222211111111101
Q ss_pred CCchhhHHHHHHhhhcCCCChHHHHHHhhc-CCCHHHHHhhhHHHhh--hhhhHHHHHHhccccCCChHHHhhhhcCCCC
Q 024362 128 ESEHPFSLEIEELTEKVMVTPADVAERLMR-SEVPEVALRDLIDFLK--NKKREQEVEELTEKVMVTPADVAERLMRSEV 204 (268)
Q Consensus 128 ~~~~~lf~~i~~~~~~~~~tpAei~~~l~~-~~d~~~al~~~~~~Lk--~h~l~~eIe~li~e~~~SPAEVqg~Ll~k~d 204 (268)
.+..++...+.... .+++..+...... .+++..|+.-+..... ....++.+..++....+ .++...|. +.+
T Consensus 167 ~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~ 240 (334)
T 1a5t_A 167 PPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDW--YSLLAALN-HEQ 240 (334)
T ss_dssp CCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHHCCC--GGGHHHHC-STT
T ss_pred CCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhChHH--HHHHHHHh-ccc
Confidence 12333333333322 5677666544333 5778777654432211 11223334444432111 13444443 458
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024362 205 PEVALRDLIDFLKIKKRE 222 (268)
Q Consensus 205 p~~Al~~l~~wl~~~~~~ 222 (268)
+...+.-+..|++....-
T Consensus 241 ~~~~l~~l~~~~rdll~~ 258 (334)
T 1a5t_A 241 APARLHWLATLLMDALKR 258 (334)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998876643
No 75
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=9e-06 Score=74.41 Aligned_cols=76 Identities=9% Similarity=0.162 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc------CCcEEEEeccccccChHHHHHHHHhc---C---CC
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL------NFDVYDLELSALLRGNMELRNLLIAT---E---NK 72 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l------~~~iy~l~ls~~~~~d~~L~~lf~~~---p---~~ 72 (268)
++++.+..++.... ||||+|||||+++.++|..+ ..|++.++.++...+-+.++.++..+ | .+
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~ 83 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTR 83 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSS
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCc
Confidence 46677777877643 89999999999999999863 56899998764234555666666654 3 36
Q ss_pred eeEEEeCCccchh
Q 024362 73 SLLVVEDIDCSIE 85 (268)
Q Consensus 73 ~IiliEDID~~~~ 85 (268)
.||+|||+|....
T Consensus 84 kvviIdead~lt~ 96 (305)
T 2gno_A 84 KYVIVHDCERMTQ 96 (305)
T ss_dssp EEEEETTGGGBCH
T ss_pred eEEEeccHHHhCH
Confidence 7999999998753
No 76
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.99 E-value=5.6e-06 Score=81.32 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=46.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccC---------------hHHHHHHHHhcC-CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRG---------------NMELRNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~---------------d~~L~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
+|||+|||||+|+++||+.++.+++.++++. ..+ ...+..+|..+. ...|++|||||.+..
T Consensus 113 l~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~-~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~ 189 (543)
T 3m6a_A 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGG-VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSS 189 (543)
T ss_dssp EESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTCSSSEEEEEEESSSCC-
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEecc-cchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhh
Confidence 7999999999999999999999999998876 111 122344555553 455999999999875
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.96 E-value=1.6e-05 Score=80.52 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcC-------c---cccccCCCCHHHHHHHHHhhc---CCcEEEEecccccc----ChHHHHHHHH
Q 024362 5 FDVKKMIMDDLEMFLKR-------K---DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLR----GNMELRNLLI 67 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~-------~---~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~----~d~~L~~lf~ 67 (268)
+..++.|..-+...... . =+||++|||||+++.|||..+ +.+++.++++...- ....+...+.
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~ 576 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR 576 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH
Confidence 44555666666665421 1 179999999999999999998 78999999987211 1234445554
Q ss_pred hcCCCeeEEEeCCccchh
Q 024362 68 ATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 68 ~~p~~~IiliEDID~~~~ 85 (268)
.. +.+||||||||.+..
T Consensus 577 ~~-~~~vl~lDEi~~~~~ 593 (758)
T 3pxi_A 577 RK-PYSVVLLDAIEKAHP 593 (758)
T ss_dssp HC-SSSEEEEECGGGSCH
T ss_pred hC-CCeEEEEeCccccCH
Confidence 43 578999999998754
No 78
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=5.9e-06 Score=67.73 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=42.2
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+||++|||||+|+.++|+.+ |..+..++... .... .-+..+.|++|||++....
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~-~~~~-------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS-MPLT-------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT-SCCC-------GGGGGCSEEEEESTTCCCS
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH-hhHH-------HHHhCCCEEEEeCccccCh
Confidence 78999999999999999998 88888888776 2222 1134578999999998543
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.94 E-value=2.4e-05 Score=71.05 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHH-HHHHhc--------
Q 024362 5 FDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELR-NLLIAT-------- 69 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~-~lf~~~-------- 69 (268)
....+.++.-+..+..... .||++|||||+++.+|+... +.+++.++.+. +.++.+. .||...
T Consensus 8 s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~--~~~~l~~~~lfg~~~g~~tg~~ 85 (304)
T 1ojl_A 8 SPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA--LNESLLESELFGHEKGAFTGAD 85 (304)
T ss_dssp SHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS--CCHHHHHHHHTCCCSSCCC---
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC--CChHHHHHHhcCccccccCchh
Confidence 4455667777777765443 79999999999999999965 67888888776 4443332 233211
Q ss_pred ---------CCCeeEEEeCCccchh
Q 024362 70 ---------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 ---------p~~~IiliEDID~~~~ 85 (268)
...++|+|||||....
T Consensus 86 ~~~~g~~~~a~~g~L~LDEi~~l~~ 110 (304)
T 1ojl_A 86 KRREGRFVEADGGTLFLDEIGDISP 110 (304)
T ss_dssp CCCCCHHHHHTTSEEEEESCTTCCH
T ss_pred hhhcCHHHhcCCCEEEEeccccCCH
Confidence 1357999999999764
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=3.7e-05 Score=69.58 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHhh-cCcc-----ccccCCCCHHHHHHHHHhhc
Q 024362 9 KMIMDDLEMFL-KRKD-----FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 9 ~~i~~Di~~Fl-~~~~-----~Y~~~GTGKTSl~~AlA~~l 43 (268)
+.+++.+..++ .... +||++||||||++.++|+.+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566777777 5443 68999999999999999954
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.79 E-value=4.4e-05 Score=69.93 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=40.7
Q ss_pred cccCCCCHHHHHHHHHhhc---------CCcEEEEeccccc---------------------cChHH----HHHHHHhcC
Q 024362 25 HRRVGRGKSSLIAGMANFL---------NFDVYDLELSALL---------------------RGNME----LRNLLIATE 70 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~---------------------~~d~~----L~~lf~~~p 70 (268)
||++|||||+|+.+++..+ ++.++.++..... .+... |...+....
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 137 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVEN 137 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999887 5667777743210 01111 222233335
Q ss_pred CCeeEEEeCCccch
Q 024362 71 NKSLLVVEDIDCSI 84 (268)
Q Consensus 71 ~~~IiliEDID~~~ 84 (268)
.++||+|||+|.+.
T Consensus 138 ~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 138 HYLLVILDEFQSML 151 (412)
T ss_dssp CEEEEEEESTHHHH
T ss_pred CeEEEEEeCHHHHh
Confidence 68999999999864
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=5.3e-05 Score=77.90 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHhhcC----c------cccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccCh-----------
Q 024362 4 DFDVKKMIMDDLEMFLKR----K------DFHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGN----------- 59 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~----~------~~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d----------- 59 (268)
.+...+.|..-+.....+ . =+||++|||||+++.+||..+ +.+++.++.+.. ...
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~-~~~~~~s~l~g~~~ 641 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY-MEKHAVSRLIGAPP 641 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC-CSSGGGGGC-----
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc-cchhHHHHHcCCCC
Confidence 344555666666665421 1 279999999999999999999 889999998762 221
Q ss_pred --------HHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 60 --------MELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 60 --------~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
..|...+.. .+.+||||||||.+-.
T Consensus 642 ~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~~ 674 (854)
T 1qvr_A 642 GYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAHP 674 (854)
T ss_dssp ---------CHHHHHHH-CSSEEEEESSGGGSCH
T ss_pred CCcCccccchHHHHHHh-CCCeEEEEecccccCH
Confidence 223333333 3478999999998643
No 83
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=0.00011 Score=65.49 Aligned_cols=45 Identities=27% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCc--cccccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 9 KMIMDDLEMFLKRK--DFHRRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~--~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
+..++.|.. +... -.||++|+|||+|+..++..++.+++.+++..
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 344556666 5542 26899999999999999999888888888764
No 84
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.70 E-value=2.6e-05 Score=75.00 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEeccccc--cChHHHHHHHHhcC--C
Q 024362 11 IMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSALL--RGNMELRNLLIATE--N 71 (268)
Q Consensus 11 i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~~--~~d~~L~~lf~~~p--~ 71 (268)
.+..+...+.... +||+||||||+++.+||..+ +..++.++++... .....++.+|..+. .
T Consensus 188 ~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~ 267 (468)
T 3pxg_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAG 267 (468)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHhcC
Confidence 3444555564432 89999999999999999997 8889998887322 22356777777654 5
Q ss_pred CeeEEEe
Q 024362 72 KSLLVVE 78 (268)
Q Consensus 72 ~~IiliE 78 (268)
++|++||
T Consensus 268 ~~iLfiD 274 (468)
T 3pxg_A 268 NIILFID 274 (468)
T ss_dssp CCEEEEC
T ss_pred CeEEEEe
Confidence 7899988
No 85
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=5.3e-05 Score=71.61 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
+++++..=+.+.. .+|++|||||||+.+||+.++..++.++.+. +.+...+..++.++++++||+|....
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-----~~~~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-----DRLNFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-----TTHHHHHGGGTTCSCEEETTCCCSTT
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-----hhHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3444443333433 6899999999999999999988877644332 23444577788999999999998864
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.60 E-value=5.7e-05 Score=73.89 Aligned_cols=60 Identities=10% Similarity=-0.034 Sum_probs=37.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCC--cEEEEeccccccChHHH-----------HHHHHhc-----CCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF--DVYDLELSALLRGNMEL-----------RNLLIAT-----ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~--~iy~l~ls~~~~~d~~L-----------~~lf~~~-----p~~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.+||..++. ++..++..- .+.++| ...|... +.++|++||||+.+..
T Consensus 46 L~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~--~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~ 123 (500)
T 3nbx_X 46 LLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF--STPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGP 123 (500)
T ss_dssp EECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT--CCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCH
T ss_pred eecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc--CCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcH
Confidence 7999999999999999999965 333333221 111111 1122211 2467999999987654
No 87
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.59 E-value=7e-05 Score=67.97 Aligned_cols=67 Identities=10% Similarity=0.073 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCc-c------ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcCCCeeEEEeCCcc
Q 024362 10 MIMDDLEMFLKRK-D------FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATENKSLLVVEDIDC 82 (268)
Q Consensus 10 ~i~~Di~~Fl~~~-~------~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p~~~IiliEDID~ 82 (268)
.+..-+..|++.+ . +|||||||||.|+.|||+.+++-- .++-+. . ...|+.++.+.|++.||...
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G-~vn~~~-----~--~f~l~~~~~k~i~l~Ee~~~ 159 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN-----E--NFPFNDCVDKMVIWWEEGKM 159 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC-----S--SCTTGGGSSCSEEEECSCCE
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccc-eeeccc-----c--ccccccccccEEEEeccccc
Confidence 3556788898865 2 799999999999999999876632 223322 1 12466777888888888665
Q ss_pred ch
Q 024362 83 SI 84 (268)
Q Consensus 83 ~~ 84 (268)
.-
T Consensus 160 ~~ 161 (267)
T 1u0j_A 160 TA 161 (267)
T ss_dssp ET
T ss_pred hh
Confidence 43
No 88
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.57 E-value=4.8e-05 Score=76.99 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhc----------CCcEEEEecccc--ccChHHHHHHHHhcC--
Q 024362 10 MIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFL----------NFDVYDLELSAL--LRGNMELRNLLIATE-- 70 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l----------~~~iy~l~ls~~--~~~d~~L~~lf~~~p-- 70 (268)
..+..+...+.... +||+||||||+++.+||..+ +..++.+++... +.....++.+|..+.
T Consensus 187 ~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~ 266 (758)
T 3pxi_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQA 266 (758)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhc
Confidence 34445555664432 89999999999999999997 899998888331 123356778887664
Q ss_pred CCeeEEEe
Q 024362 71 NKSLLVVE 78 (268)
Q Consensus 71 ~~~IiliE 78 (268)
.++||+||
T Consensus 267 ~~~iLfiD 274 (758)
T 3pxi_A 267 GNIILFID 274 (758)
T ss_dssp CCCEEEEC
T ss_pred CCEEEEEc
Confidence 58899998
No 89
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.50 E-value=6.9e-05 Score=67.39 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=20.1
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+||++|||||+|+.++|..++
T Consensus 50 l~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 50 VFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EECCGGGCTTHHHHHHHHHSC
T ss_pred EECCCCccHHHHHHHHHHhCc
Confidence 799999999999999999987
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.47 E-value=0.00014 Score=83.21 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=48.7
Q ss_pred ccccCCCCHHHHH-HHHHhhcCCcEEEEeccccccChHHHHHHHHhc-------------C----CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLI-AGMANFLNFDVYDLELSALLRGNMELRNLLIAT-------------E----NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~-~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~-------------p----~~~IiliEDID~~~~ 85 (268)
+|||||||||+++ .++|...++.++.++.+. ..+...+...+... | .++||+|||||....
T Consensus 1272 L~GPpGtGKT~la~~~l~~~~~~~~~~infsa-~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~ 1350 (2695)
T 4akg_A 1272 LCGPPGSGKTMIMNNALRNSSLYDVVGINFSK-DTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKL 1350 (2695)
T ss_dssp EECSTTSSHHHHHHHHHHSCSSCEEEEEECCT-TCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCC
T ss_pred EECCCCCCHHHHHHHHHhcCCCCceEEEEeec-CCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccc
Confidence 8999999999999 777777799999999988 55666676666531 1 368999999998643
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.37 E-value=0.0002 Score=63.64 Aligned_cols=43 Identities=21% Similarity=0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEecc
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELS 53 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls 53 (268)
+..++.+...+.... .||++|+|||||+..++..++ ++.+++.
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 344555555554322 789999999999999999886 5556654
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00019 Score=67.10 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=40.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec--ccc----ccC-hHHHHHHHHhcCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL--SAL----LRG-NMELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l--s~~----~~~-d~~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
.||+||||||+|+.++|...|..++.+++ .+. ..+ +..+..++..+....+|+||+|++...
T Consensus 128 I~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~ 196 (331)
T 2vhj_A 128 VTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIG 196 (331)
T ss_dssp EECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-
T ss_pred EEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccc
Confidence 78999999999999999877666555555 221 111 222333444443222999999999754
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.15 E-value=0.00031 Score=80.42 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=54.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC-CCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
.+||+|||||++++++|..+|..++.++.++ .++-..+..+|..+- ..+++++|||+.+-.
T Consensus 650 l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e-~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~ 711 (2695)
T 4akg_A 650 FFGPAGTGKTETVKAFGQNLGRVVVVFNCDD-SFDYQVLSRLLVGITQIGAWGCFDEFNRLDE 711 (2695)
T ss_dssp EECCTTSCHHHHHHHHHHTTTCCCEEEETTS-SCCHHHHHHHHHHHHHHTCEEEEETTTSSCH
T ss_pred ccCCCCCCcHHHHHHHHHHhCCcEEEEECCC-CCChhHhhHHHHHHHhcCCEeeehhhhhcCh
Confidence 6899999999999999999999999999998 888899999887764 479999999998654
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.04 E-value=0.00057 Score=67.61 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCc
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
+.+++++...+.... ++|++|||||+|+.+||+.+...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 356678888887765 78999999999999999998643
No 95
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=4.8e-05 Score=75.62 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=41.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec--cccccChHHHHHHHHh----------cCCCeeEEEeCCccchh
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL--SALLRGNMELRNLLIA----------TENKSLLVVEDIDCSIE 85 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l--s~~~~~d~~L~~lf~~----------~p~~~IiliEDID~~~~ 85 (268)
+||+||||||+|+.++|..++..+|.... +...++.......+.. ...++|++|||||.+..
T Consensus 332 L~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 332 IIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD 405 (595)
T ss_dssp EEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS
T ss_pred EECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH
Confidence 78999999999999999999988877432 1111211111111111 12468999999999764
No 96
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.66 E-value=0.002 Score=51.54 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=24.7
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
-|++|+||||++..||..+++.++..+.
T Consensus 7 ~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp ECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 4899999999999999999998877653
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.46 E-value=0.0019 Score=55.58 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=40.2
Q ss_pred ccccCCCCHHHHHHHHHhh--------cC-CcEEEEecccccc---------------C-----hHHHHHHHHhcCC--C
Q 024362 24 FHRRVGRGKSSLIAGMANF--------LN-FDVYDLELSALLR---------------G-----NMELRNLLIATEN--K 72 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~--------l~-~~iy~l~ls~~~~---------------~-----d~~L~~lf~~~p~--~ 72 (268)
+.|+||||||+++.+++-. .| ..+|..++..... . ...+...+ ..|. .
T Consensus 10 ~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 88 (199)
T 2r2a_A 10 ITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWI-KKPENIG 88 (199)
T ss_dssp EECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHT-TSGGGTT
T ss_pred EEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHh-hccccCc
Confidence 5799999999999886433 35 7788777553211 1 12233322 2355 9
Q ss_pred eeEEEeCCccchh
Q 024362 73 SLLVVEDIDCSIE 85 (268)
Q Consensus 73 ~IiliEDID~~~~ 85 (268)
+||+|||.+..+.
T Consensus 89 ~vliIDEAq~l~~ 101 (199)
T 2r2a_A 89 SIVIVDEAQDVWP 101 (199)
T ss_dssp CEEEETTGGGTSB
T ss_pred eEEEEEChhhhcc
Confidence 9999999998754
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.0015 Score=54.78 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 5 FDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
++.....++|+.-=+.+.. ..|++|+||||++.+||..+|+.++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3444556667765555543 5699999999999999999999987654
No 99
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0022 Score=52.00 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|++|+||||++.+||..++..++.++.
T Consensus 8 l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 35899999999999999999998887654
No 100
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.37 E-value=0.0015 Score=53.56 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+||||++.+||..+|+.++..+
T Consensus 10 l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 5699999999999999999999988754
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.24 E-value=0.0012 Score=72.93 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=43.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc---EEEEeccc----------------cc-----cChHHHHHHHHhc--CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD---VYDLELSA----------------LL-----RGNMELRNLLIAT--ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~---iy~l~ls~----------------~~-----~~d~~L~~lf~~~--p~~~Iili 77 (268)
.||++|||||.|++++|.+-..+ ...++... +. .++..|+.+|..+ -.+|+|++
T Consensus 1087 ~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~ 1166 (1706)
T 3cmw_A 1087 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 1166 (1706)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEe
Confidence 69999999999999999755332 33333222 11 1355677777633 35999999
Q ss_pred eCCccchhh
Q 024362 78 EDIDCSIEL 86 (268)
Q Consensus 78 EDID~~~~~ 86 (268)
|+||+....
T Consensus 1167 d~~~al~~~ 1175 (1706)
T 3cmw_A 1167 DSVAALTPK 1175 (1706)
T ss_dssp SCGGGCCCH
T ss_pred CchHhcCcc
Confidence 999988763
No 102
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.24 E-value=0.0018 Score=52.79 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+||||++.+||..+|+.++..+
T Consensus 9 i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 9 FIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 4689999999999999999999887654
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.23 E-value=0.0026 Score=51.37 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
..|++|+||||++.+||+.+++.++.
T Consensus 9 l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp EECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 46899999999999999999986655
No 104
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.23 E-value=0.0019 Score=52.21 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=25.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|.+|+||||++..||..||++++..+
T Consensus 12 l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3588999999999999999999998865
No 105
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.19 E-value=0.001 Score=62.75 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhcCcc-----ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 5 FDVKKMIMDDLEMFLKRKD-----FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 5 ~~~K~~i~~Di~~Fl~~~~-----~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
..+.+.++..+..++.+.. ..|++|+||||++.+||+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 5678889999999998754 58999999999999999999998855
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.06 E-value=0.0064 Score=70.70 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=49.9
Q ss_pred HHHhhcCcc---ccccCCCCHHHHHHH-HHhhcCCcEEEEeccccccChHHHHHHHHh------c--------C----CC
Q 024362 15 LEMFLKRKD---FHRRVGRGKSSLIAG-MANFLNFDVYDLELSALLRGNMELRNLLIA------T--------E----NK 72 (268)
Q Consensus 15 i~~Fl~~~~---~Y~~~GTGKTSl~~A-lA~~l~~~iy~l~ls~~~~~d~~L~~lf~~------~--------p----~~ 72 (268)
+..++.... ..||+|||||+++.. ++...++.++.+++|+ ..+...+...+.. . | ++
T Consensus 1297 l~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~-~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS-ATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp HHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT-TCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred HHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC-CCCHHHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 444454443 789999999988754 6666688899999998 5666777777652 0 1 25
Q ss_pred eeEEEeCCccch
Q 024362 73 SLLVVEDIDCSI 84 (268)
Q Consensus 73 ~IiliEDID~~~ 84 (268)
+|++||||+-..
T Consensus 1376 ~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A 1376 LVVFCDEINLPS 1387 (3245)
T ss_dssp EEEEETTTTCCC
T ss_pred EEEEecccCCCC
Confidence 799999998654
No 107
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.05 E-value=0.0026 Score=52.05 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|+|||+++..||..+|+.++..+
T Consensus 7 l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4589999999999999999999988765
No 108
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.02 E-value=0.0032 Score=55.34 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=25.0
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.|++|+|||||+.+||..+++.++.++-
T Consensus 7 ~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred ECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 5899999999999999999998887653
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.94 E-value=0.0082 Score=67.34 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=44.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--------------------cChHHHHHHHHhc---CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--------------------RGNMELRNLLIAT---ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--------------------~~d~~L~~lf~~~---p~~~Iili 77 (268)
+|||+|||||+|+.++|... |..++.++..... -..+.+.+++..+ ..+++|+|
T Consensus 1432 l~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVI 1511 (2050)
T 3cmu_A 1432 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 1511 (2050)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 89999999999999997654 6778888766421 0112343444444 67899999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
|+|++...
T Consensus 1512 Dsi~al~p 1519 (2050)
T 3cmu_A 1512 DSVAALTP 1519 (2050)
T ss_dssp SCGGGCCC
T ss_pred cChhHhcc
Confidence 99997765
No 110
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.93 E-value=0.0032 Score=50.67 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|.+|+||||++..||..+|+.++..+
T Consensus 7 l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 4589999999999999999999887654
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.90 E-value=0.0033 Score=51.41 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++.+||..+|+.++.+
T Consensus 16 i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 579999999999999999999887764
No 112
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.90 E-value=0.017 Score=53.00 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=31.3
Q ss_pred ccccCCCCHHHHHHHHHhh---------cCCcEEEEeccccccChHHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMANF---------LNFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---------l~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
+||++|+|||+|+..+|.. .+..++.+++.. ..+...|...+.
T Consensus 127 I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~-~~~~~~l~~~~~ 178 (343)
T 1v5w_A 127 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN-TFRPDRLRDIAD 178 (343)
T ss_dssp EECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS-CCCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC-CCCHHHHHHHHH
Confidence 7999999999999999986 356788888765 233444444333
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.89 E-value=0.014 Score=55.51 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhhcCcc----ccccCCCCHHHHHHHHHhhc---CC-cEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD----FHRRVGRGKSSLIAGMANFL---NF-DVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~----~Y~~~GTGKTSl~~AlA~~l---~~-~iy~l~ls~ 54 (268)
|+++|++.+ .-+..|+.... ..|++|||||+++.+++..+ +. .|+.+..+.
T Consensus 26 Ln~~Q~~av-~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 26 LTEGQKNAF-NIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH 84 (459)
T ss_dssp CCHHHHHHH-HHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred CCHHHHHHH-HHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence 566777655 55556655443 67999999999999999887 44 677765554
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.85 E-value=0.0034 Score=51.33 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+||||++..||..+|+.++..
T Consensus 10 l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 458999999999999999999887663
No 115
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.80 E-value=0.0085 Score=69.67 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=54.3
Q ss_pred cccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC-CCeeEEEeCCccchh
Q 024362 23 DFHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE-NKSLLVVEDIDCSIE 85 (268)
Q Consensus 23 ~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p-~~~IiliEDID~~~~ 85 (268)
.-+||.|||||.+++++|..||..+++++-++ .++-..+.++|..+- ..+..++|||+.+-.
T Consensus 608 ~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~-~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~ 670 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQLGRFVLVFCCDE-GFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE 670 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEECSS-CCCHHHHHHHHHHHHHHTCEEEEETTTSSCH
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCC-CCCHHHHHHHHhhHhhcCcEEEehhhhcCCH
Confidence 36799999999999999999999999999988 888888988888764 578889999998643
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.79 E-value=0.012 Score=48.92 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=31.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLL 66 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf 66 (268)
.+|++|+|||+|+..+|+..+..++.++... ..+...+..++
T Consensus 25 i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~-~~~~~~~~~~~ 66 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGLLSGKKVAYVDTEG-GFSPERLVQMA 66 (220)
T ss_dssp EECSTTSSHHHHHHHHHHHHCSEEEEEESSC-CCCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEEEECCC-CCCHHHHHHHH
Confidence 7899999999999999997788888888765 23344444433
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.75 E-value=0.0034 Score=52.80 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=37.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc--c-----cc----------ChHHHHHHHHhcC-CCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA--L-----LR----------GNMELRNLLIATE-NKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~--~-----~~----------~d~~L~~lf~~~p-~~~IiliEDID~ 82 (268)
+||++|+|||+++.-+|..+ |..++.+...- . .. .-..+..++..++ ...+|+||||--
T Consensus 8 i~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~Q~ 87 (184)
T 2orw_A 8 ITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQF 87 (184)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCGGG
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECccc
Confidence 68999999999997777554 67776653220 0 00 0012334555554 456899999876
Q ss_pred c
Q 024362 83 S 83 (268)
Q Consensus 83 ~ 83 (268)
.
T Consensus 88 ~ 88 (184)
T 2orw_A 88 F 88 (184)
T ss_dssp S
T ss_pred C
Confidence 4
No 118
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.74 E-value=0.0095 Score=48.46 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=24.8
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
-|.+|+||||++..||..+ |+.++..+-
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp ECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4889999999999999998 999887753
No 119
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.74 E-value=0.0043 Score=49.12 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++.+| ..+|+.++.+
T Consensus 6 l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3589999999999999 8999987764
No 120
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.69 E-value=0.0039 Score=51.59 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhh-cCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANF-LNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~-l~~~iy~l~ 51 (268)
..|++||||||++.+||.. +|+.++.++
T Consensus 15 l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp EECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 5699999999999999999 788777654
No 121
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.69 E-value=0.02 Score=53.42 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=43.7
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--------------------cChHHHHHHHHhc---CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--------------------RGNMELRNLLIAT---ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--------------------~~d~~L~~lf~~~---p~~~Iili 77 (268)
+|+++|+|||+|+..+|..+ |..+..+++.... .+...+..++..+ ....+|+|
T Consensus 68 I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVI 147 (356)
T 1u94_A 68 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 147 (356)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 78999999999999988764 6788888874310 0123344444433 45779999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
|.+.....
T Consensus 148 Dsl~~l~~ 155 (356)
T 1u94_A 148 DSVAALTP 155 (356)
T ss_dssp ECGGGCCC
T ss_pred cCHHHhcc
Confidence 99988763
No 122
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.69 E-value=0.0046 Score=49.59 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|.+|+||||++..||..+|+.++..+
T Consensus 5 l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3588999999999999999999888754
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0047 Score=50.24 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|.+|+||||++..||..+|+.++..
T Consensus 8 l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 468999999999999999999877654
No 124
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.67 E-value=0.0044 Score=50.76 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=24.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||..+|+.++..+
T Consensus 14 l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp EEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 5699999999999999999999877653
No 125
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.65 E-value=0.0054 Score=51.11 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||..+|+.++..+
T Consensus 23 l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred EECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 4589999999999999999998776644
No 126
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.63 E-value=0.0046 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|++|+||||++..||+ +|+.++..+
T Consensus 7 ~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred ECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 58899999999999999 888777654
No 127
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.62 E-value=0.0057 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+||||++.+||+.+|+.++..
T Consensus 13 l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 13 LMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred EEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 458999999999999999998776654
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.61 E-value=0.021 Score=52.95 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=41.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc---------c-----------ChHHHHHHHHhc---CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL---------R-----------GNMELRNLLIAT---ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~---------~-----------~d~~L~~lf~~~---p~~~Iili 77 (268)
.||++|+|||+|+..+|... |..+..+++.... . +-..+..++..+ ..+.+|+|
T Consensus 66 I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVI 145 (349)
T 2zr9_A 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVI 145 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 78999999999999998654 5678888765411 0 112233333322 34789999
Q ss_pred eCCccch
Q 024362 78 EDIDCSI 84 (268)
Q Consensus 78 EDID~~~ 84 (268)
|++.+..
T Consensus 146 Dsl~~l~ 152 (349)
T 2zr9_A 146 DSVAALV 152 (349)
T ss_dssp ECGGGCC
T ss_pred cChHhhc
Confidence 9999886
No 129
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.59 E-value=0.0051 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+.++.+
T Consensus 25 l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 458999999999999999999987765
No 130
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.59 E-value=0.018 Score=50.96 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=26.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+.+++|+|||+++.++|..+ |+++..+++..
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45889999999999999876 89998888754
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.57 E-value=0.0042 Score=50.65 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+.++..
T Consensus 9 l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 468999999999999999999876654
No 132
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.55 E-value=0.012 Score=48.20 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.-|++|+||||++..||..| |++++...-
T Consensus 5 l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 34899999999999999999 999886644
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.55 E-value=0.017 Score=48.71 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHhhcC----c---cccccCCCCHHHHHHHHHhh--c-------CCcEEEEeccccccChHHHHHHHHh
Q 024362 13 DDLEMFLKR----K---DFHRRVGRGKSSLIAGMANF--L-------NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 13 ~Di~~Fl~~----~---~~Y~~~GTGKTSl~~AlA~~--l-------~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
..|+..|.+ . .++|++|+|||+|+..||+. + +..++.++... ..+...+..++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~-~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-TFRPERLLAVAER 81 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-CCCHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC-CcCHHHHHHHHHH
Confidence 345666643 1 27899999999999999995 3 45677777654 2234444444443
No 134
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.53 E-value=0.053 Score=50.57 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC---CcEEEEeccccccChHHH-HHHHHhc-----------
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN---FDVYDLELSALLRGNMEL-RNLLIAT----------- 69 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~~~~d~~L-~~lf~~~----------- 69 (268)
-+.+++-+...-.... .++++|||||.++.+|..... -+++.+|.+. +.++.+ ..||...
T Consensus 146 m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~--~~~~~~~~elfg~~~g~~tga~~~~ 223 (387)
T 1ny5_A 146 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVAS--IPRDIFEAELFGYEKGAFTGAVSSK 223 (387)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTT--SCHHHHHHHHHCBCTTSSTTCCSCB
T ss_pred hhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCC--CCHHHHHHHhcCCCCCCCCCccccc
Confidence 3445555555443332 689999999999999988764 5889998776 555544 3455421
Q ss_pred ------CCCeeEEEeCCccchh
Q 024362 70 ------ENKSLLVVEDIDCSIE 85 (268)
Q Consensus 70 ------p~~~IiliEDID~~~~ 85 (268)
....+++||||+..-.
T Consensus 224 ~g~~~~a~~gtlfldei~~l~~ 245 (387)
T 1ny5_A 224 EGFFELADGGTLFLDEIGELSL 245 (387)
T ss_dssp CCHHHHTTTSEEEEESGGGCCH
T ss_pred CCceeeCCCcEEEEcChhhCCH
Confidence 2356999999998754
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.53 E-value=0.0043 Score=50.44 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC-----CcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLN-----FDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~-----~~iy~ 49 (268)
..|++|+||||++..||..++ +.++.
T Consensus 8 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 568999999999999999998 66654
No 136
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.53 E-value=0.0071 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=22.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-|++|+||||++..||+.+|++++.
T Consensus 10 i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCccc
Confidence 45899999999999999999987655
No 137
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.53 E-value=0.0053 Score=50.41 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+||||++..||..+|+.++..
T Consensus 17 l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp EEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 569999999999999999999877664
No 138
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.51 E-value=0.027 Score=58.15 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcC---c----cccccCCCCHHHHHHHHHhh-------cCCcEEEEeccc
Q 024362 9 KMIMDDLEMFLKR---K----DFHRRVGRGKSSLIAGMANF-------LNFDVYDLELSA 54 (268)
Q Consensus 9 ~~i~~Di~~Fl~~---~----~~Y~~~GTGKTSl~~AlA~~-------l~~~iy~l~ls~ 54 (268)
++.++.|...|.. . ..+|..|.|||+|+..++.. +.-.++-++++.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 4566777787732 1 27899999999999998876 444566777765
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.49 E-value=0.0056 Score=49.69 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+||||++..||..+|+.++..
T Consensus 11 l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 468999999999999999999887765
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.47 E-value=0.0077 Score=49.29 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+|||||+.+||+.++...+.++
T Consensus 14 l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp EEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred EECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 4689999999999999999777655554
No 141
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.46 E-value=0.0093 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=25.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
.-|.+|+||||++.+||+.+ |++++.++
T Consensus 10 l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 35889999999999999998 99988776
No 142
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.46 E-value=0.0062 Score=50.34 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|++|+||||++.+||..+|+.++..+
T Consensus 8 ~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp ECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 488999999999999999999888754
No 143
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.44 E-value=0.01 Score=48.92 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.9
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~l~l 52 (268)
+-|++|+||||++..||..+ |++++.++-
T Consensus 9 l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 45899999999999999999 688887654
No 144
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.42 E-value=0.028 Score=52.66 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=42.6
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--------------------cChHHHHHHHHhc---CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--------------------RGNMELRNLLIAT---ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--------------------~~d~~L~~lf~~~---p~~~Iili 77 (268)
.|+++|+|||+|+..+|... |..+..+++.... .+-+.+..++..+ ....+|||
T Consensus 79 I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVI 158 (366)
T 1xp8_A 79 IYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVV 158 (366)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 78999999999999888764 6788888876421 0113333334333 35779999
Q ss_pred eCCccch
Q 024362 78 EDIDCSI 84 (268)
Q Consensus 78 EDID~~~ 84 (268)
|.|....
T Consensus 159 Dsl~~l~ 165 (366)
T 1xp8_A 159 DSVAALT 165 (366)
T ss_dssp ECTTTCC
T ss_pred eChHHhc
Confidence 9999876
No 145
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.40 E-value=0.0085 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-|++|+||||++.+||+.+|..++.
T Consensus 34 l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 35899999999999999999875554
No 146
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.39 E-value=0.0067 Score=50.58 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||+ +|+.++..+
T Consensus 7 l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 358999999999999999 888876543
No 147
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.38 E-value=0.007 Score=50.84 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+.++..
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 358999999999999999999887766
No 148
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.31 E-value=0.0071 Score=51.16 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++..||..+++.++..
T Consensus 9 l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 569999999999999999999877665
No 149
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.30 E-value=0.0075 Score=50.56 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+||||++..||..+|+.++..
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 358999999999999999999888765
No 150
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.29 E-value=0.0071 Score=51.90 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++.+||..|++.++..
T Consensus 21 l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecH
Confidence 579999999999999999999887765
No 151
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.27 E-value=0.0091 Score=48.95 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
-|.+|+||||++..||..+++.++.
T Consensus 6 ~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred ECCCccCHHHHHHHHHHhcCCcEEc
Confidence 4889999999999999999986653
No 152
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.24 E-value=0.029 Score=54.17 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcC---c----cccccCCCCHHHHHHHHHh-------hcCCcEEEEeccc
Q 024362 8 KKMIMDDLEMFLKR---K----DFHRRVGRGKSSLIAGMAN-------FLNFDVYDLELSA 54 (268)
Q Consensus 8 K~~i~~Di~~Fl~~---~----~~Y~~~GTGKTSl~~AlA~-------~l~~~iy~l~ls~ 54 (268)
++..++.|...+.. . .-+|+.|.|||+|+..++. .|.-.++.++++.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 34566777887752 1 2689999999999999864 3333466666654
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.22 E-value=0.022 Score=51.65 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=34.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---------CCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---------NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
+||++|+|||+|+..+|... +..++.+++.. ..+...+...+..+
T Consensus 112 i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~-~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 112 FFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG-TFRWERIENMAKAL 165 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS-CCCHHHHHHHHHHT
T ss_pred EECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC-CCCHHHHHHHHHHh
Confidence 79999999999999999865 56788888776 33456666555544
No 154
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.22 E-value=0.01 Score=52.69 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=33.2
Q ss_pred HHHHHHHHhhc----Ccc--ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 10 MIMDDLEMFLK----RKD--FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 10 ~i~~Di~~Fl~----~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.+++|+.-=+. .+. .-|++|+||||++.+||+.+|+.++..+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46777755444 333 5699999999999999999999888754
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.21 E-value=0.0085 Score=49.71 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
+.|++|+||||++..||..+|+.++..+
T Consensus 20 l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 4699999999999999999998766643
No 156
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.17 E-value=0.0077 Score=51.10 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=24.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++..||..+|+.++..
T Consensus 10 l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 568999999999999999999888765
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.11 E-value=0.008 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=19.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
.-|.+|+||||++..||..+++.++
T Consensus 10 l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EECCC----CHHHHHHHHHSTTCEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4689999999999999999999877
No 158
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.11 E-value=0.026 Score=50.57 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHH-hhcCc----c-----ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 4 DFDVKKMIMDDLEM-FLKRK----D-----FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 4 d~~~K~~i~~Di~~-Fl~~~----~-----~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.++....+++++-. ++... . .-|++|+||||++.+|+..++-.++.||.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 44555555555544 33321 1 46999999999999999998545566654
No 159
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.06 E-value=0.0088 Score=50.90 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++..||..+|+.++.+
T Consensus 12 l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 12 IMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 579999999999999999999887754
No 160
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.02 E-value=0.023 Score=56.15 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCcc--ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc---------cChHHHHHHHH
Q 024362 2 AVDFDVKKMIMDDLEMFLKRKD--FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL---------RGNMELRNLLI 67 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~---------~~d~~L~~lf~ 67 (268)
.|+++|++.+.. .+.+.- ..|+||||||+++.+|+..+ +..|..+..+... ....++..++.
T Consensus 189 ~L~~~Q~~Av~~----~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~ 264 (574)
T 3e1s_A 189 GLSEEQASVLDQ----LAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLG 264 (574)
T ss_dssp TCCHHHHHHHHH----HTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTT
T ss_pred CCCHHHHHHHHH----HHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHc
Confidence 367777776533 223332 57999999999999998865 7888877655421 12233455553
Q ss_pred hcC-----------CCeeEEEeCCccc
Q 024362 68 ATE-----------NKSLLVVEDIDCS 83 (268)
Q Consensus 68 ~~p-----------~~~IiliEDID~~ 83 (268)
..| ...+|+|||.--+
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml 291 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMM 291 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGC
T ss_pred CCcchhhhhhcccccCCEEEEcCccCC
Confidence 333 3468888886543
No 161
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.97 E-value=0.016 Score=48.42 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
.-|++|+||||++.+||+.+ |.-+|.++
T Consensus 30 l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 46999999999999999999 65545554
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.94 E-value=0.026 Score=49.19 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=24.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls 53 (268)
..|++|+||||++.+||..++..++.++..
T Consensus 37 l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp EESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 458999999999999999998766666543
No 163
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHh-hcCCcE
Q 024362 24 FHRRVGRGKSSLIAGMAN-FLNFDV 47 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~-~l~~~i 47 (268)
..|++|+||||++..||. .+++.+
T Consensus 7 i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred EecCCCCCHHHHHHHHHhhcCCcEE
Confidence 458999999999999999 566443
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.89 E-value=0.036 Score=46.16 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=29.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCC---------cEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF---------DVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~---------~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
..|++|+|||+|+..||+.+-. .++.++... ......+..+++..
T Consensus 30 l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~-~~~~~~i~~~~~~~ 83 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN-TFRPERIREIAQNR 83 (231)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS-CCCHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC-CCCHHHHHHHHHHc
Confidence 6799999999999999996543 244444433 23344555555543
No 165
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.86 E-value=0.011 Score=49.81 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=24.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++..||..+|+.++..
T Consensus 5 l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 458999999999999999999887765
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.85 E-value=0.028 Score=46.28 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCC--cEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF--DVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~--~iy~l 50 (268)
+-|++|+||||++..||..++. +++..
T Consensus 9 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4689999999999999999987 46543
No 167
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.66 E-value=0.018 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-|+.|+||||++..||..||+.++.
T Consensus 32 I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 45899999999999999999987665
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.59 E-value=0.068 Score=49.95 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=40.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccc--------------------cChHHHHHHHHh---cCCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALL--------------------RGNMELRNLLIA---TENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~--------------------~~d~~L~~lf~~---~p~~~Iili 77 (268)
.||++|+|||+|+..+|..+ +..+..++..... .+-..+..++.. -....+|+|
T Consensus 66 I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVI 145 (356)
T 3hr8_A 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVV 145 (356)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEe
Confidence 68999999999999999875 5677777765410 111222222222 134678999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
|.|-+...
T Consensus 146 DSi~~l~~ 153 (356)
T 3hr8_A 146 DSVAALVP 153 (356)
T ss_dssp ECTTTCCC
T ss_pred hHhhhhcC
Confidence 99888763
No 169
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.52 E-value=0.017 Score=48.48 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+|||+++..||..+|+.++..+
T Consensus 8 i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 8 LDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 4689999999999999999998877754
No 170
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.51 E-value=0.016 Score=49.21 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.4
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
-|.+|+||||++..||..+|++++..+
T Consensus 18 tG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 378999999999999999998877744
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.49 E-value=0.01 Score=50.29 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=23.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+-|++|+||||++..||..+++.++.+
T Consensus 10 l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 10 ISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecH
Confidence 469999999999999999999865543
No 172
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.45 E-value=0.021 Score=50.36 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+.++..
T Consensus 14 i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 459999999999999999999887664
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.43 E-value=0.026 Score=46.84 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=25.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
++|++|+|||+|+..||+.+ +..++.++..
T Consensus 28 i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 78999999999999999765 5677777654
No 174
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.42 E-value=0.02 Score=53.08 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
..|++|+|||+|+.+||..++..++.+|
T Consensus 10 i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 10 LMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 4699999999999999999998888775
No 175
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.39 E-value=0.017 Score=47.47 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=23.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||.. |+.++..+
T Consensus 13 i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred EECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 4589999999999999998 88887755
No 176
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.36 E-value=0.072 Score=46.51 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.7
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+||++|+|||+++..+|..+ |..++.+.
T Consensus 17 itG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 17 ITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 57999999999999888776 77888883
No 177
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.32 E-value=0.024 Score=48.41 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|++|+||||++..||..+|+.++..
T Consensus 5 l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 358999999999999999999876665
No 178
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.32 E-value=0.024 Score=48.59 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||+.||+.++..+
T Consensus 21 i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 21 IDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 4589999999999999999998877643
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.31 E-value=0.018 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
..|++|+|||||+.+|++.++..+.
T Consensus 5 l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4689999999999999999875443
No 180
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.24 E-value=0.02 Score=48.16 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-|++|+||||++..||. +|+.++..+
T Consensus 9 i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 458999999999999999 888777653
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.21 E-value=0.063 Score=59.49 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=47.4
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccc--------------------cChHHHHHHHHhc---CCCeeEEE
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALL--------------------RGNMELRNLLIAT---ENKSLLVV 77 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~--------------------~~d~~L~~lf~~~---p~~~Iili 77 (268)
.||++|||||+|+.++|-. .|..++.+++.... .+.+.+..++..+ ...++|+|
T Consensus 39 I~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~LVVI 118 (1706)
T 3cmw_A 39 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 118 (1706)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCCEEEE
Confidence 7999999999999998765 47788888887621 1344556666655 56889999
Q ss_pred eCCccchh
Q 024362 78 EDIDCSIE 85 (268)
Q Consensus 78 EDID~~~~ 85 (268)
|+|.....
T Consensus 119 DSLt~L~~ 126 (1706)
T 3cmw_A 119 DSVAALTP 126 (1706)
T ss_dssp SCSTTCCC
T ss_pred cchhhhcc
Confidence 99999865
No 182
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.19 E-value=0.02 Score=49.73 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..|++|+||||++..||..+|+.++..
T Consensus 34 l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 679999999999999999999887765
No 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.15 E-value=0.064 Score=44.85 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=25.6
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.-|++|+|||||+.+|++.+ +.+++.++...
T Consensus 27 i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 45899999999999999986 77888775543
No 184
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.13 E-value=0.029 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=20.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
.-|++|+|||||+.+||+.++..++
T Consensus 7 l~G~~GaGKSTl~~~L~~~~~g~~~ 31 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAAQLDNSAY 31 (189)
T ss_dssp EECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred EECCCCCcHHHHHHHHhcccCCeEE
Confidence 3589999999999999998765444
No 185
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.12 E-value=0.062 Score=53.30 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
|++.|++.|..=+ ..+. -.||||||||+.+..+...+ +..|..+.-|.
T Consensus 190 LN~~Q~~AV~~al----~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 190 LDTSQKEAVLFAL----SQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCHHHHHHHHHHH----HCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCHHHHHHHHHHh----cCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 7888998886544 3343 46999999998777665544 77888877665
No 186
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.09 E-value=0.033 Score=48.78 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=24.4
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~l 52 (268)
.-|.+|+||||++..||.. +|+.++.++.
T Consensus 9 l~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4589999999999999998 7888875543
No 187
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.06 E-value=0.016 Score=46.89 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.3
Q ss_pred ccccCCCCHHHHHHHHHhhcC---CcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLN---FDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ 51 (268)
..|++|+||||++..||..++ +.+..++
T Consensus 6 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 358999999999999999886 3355554
No 188
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.05 E-value=0.026 Score=48.63 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-|++|+|||||+.+||..+|+..+.
T Consensus 32 l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEec
Confidence 56999999999999999888876543
No 189
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.99 E-value=0.025 Score=48.11 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-++.|||||+++..||..||+++|.
T Consensus 11 i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 11 IGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 45789999999999999999999886
No 190
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.96 E-value=0.022 Score=47.55 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.0
Q ss_pred cccCCCCHHHHHHHHHhhc-CCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFL-NFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l-~~~iy~l 50 (268)
-|++|+||||++..|++.+ ++.++..
T Consensus 27 ~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp EESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred ECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 4789999999999999988 5554443
No 191
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.93 E-value=0.21 Score=46.27 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=43.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc--EEEEeccccccChHHH-HHHHHhc-----------------CCCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD--VYDLELSALLRGNMEL-RNLLIAT-----------------ENKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~--iy~l~ls~~~~~d~~L-~~lf~~~-----------------p~~~IiliEDID~~ 83 (268)
.+|++||||+.++.+|....+.. ++.+|.+. +.++.+ ..||... .....++||||+..
T Consensus 157 i~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~--~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l 234 (368)
T 3dzd_A 157 ITGESGTGKEIVARLIHRYSGRKGAFVDLNCAS--IPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL 234 (368)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCSCEEEEESSS--SCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS
T ss_pred EEeCCCchHHHHHHHHHHhccccCCcEEEEccc--CChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhC
Confidence 68999999999999999877654 88888776 444443 3444321 24567999999997
Q ss_pred hh
Q 024362 84 IE 85 (268)
Q Consensus 84 ~~ 85 (268)
-.
T Consensus 235 ~~ 236 (368)
T 3dzd_A 235 DQ 236 (368)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 192
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.90 E-value=0.041 Score=46.24 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcC----cc---ccccCCCCHHHHHHHHHhhcC---CcEEEEecccc
Q 024362 10 MIMDDLEMFLKR----KD---FHRRVGRGKSSLIAGMANFLN---FDVYDLELSAL 55 (268)
Q Consensus 10 ~i~~Di~~Fl~~----~~---~Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~~ 55 (268)
.+++.|-+-+.. .. .-|++|+|||||+.+|++.+. .++-.+.+...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 455555554432 12 568999999999999999986 35666666553
No 193
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.89 E-value=0.079 Score=45.81 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=28.7
Q ss_pred HhhcCcc--ccccCCCCHHHHHHHHHhhcCCcEEEEecc
Q 024362 17 MFLKRKD--FHRRVGRGKSSLIAGMANFLNFDVYDLELS 53 (268)
Q Consensus 17 ~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls 53 (268)
.++.... ..+++|+|||.++.+++..++..++++.-+
T Consensus 104 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 104 RWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp HHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred HHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3555543 678999999999999999988777777644
No 194
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.82 E-value=0.092 Score=45.30 Aligned_cols=46 Identities=22% Similarity=0.110 Sum_probs=33.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIATE 70 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~p 70 (268)
.|+.+|+||||.+.++|-.. |+.|+.+.... +..+..-..++..++
T Consensus 33 v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K-g~~~~gE~~~l~~L~ 81 (196)
T 1g5t_A 33 VFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK-GTWPNGERNLLEPHG 81 (196)
T ss_dssp EEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC-CSSCCHHHHHHGGGT
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC-CCCCccHHHHHHhCC
Confidence 79999999999999998665 99999997654 212233344555553
No 195
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.71 E-value=0.033 Score=46.38 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=22.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.-|+.|+|||||+..|++.++-.+..++.
T Consensus 11 i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 11 IAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp EEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34899999999999999998733444443
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.66 E-value=0.012 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.-|.+|+||||++..||..++..
T Consensus 15 l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999987543
No 197
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.64 E-value=0.029 Score=52.31 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.-||+|+|||+|+..||..++..|+..|
T Consensus 45 I~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 45 LMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 4699999999999999999998776654
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.60 E-value=0.033 Score=48.32 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc--------EEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD--------VYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~--------iy~l~ls~ 54 (268)
.-|++|+||||++..||..||+. ++.+++.+
T Consensus 27 I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 45899999999999999999986 44566555
No 199
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.59 E-value=0.048 Score=44.62 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=22.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+.|.+|+||||++.+||..+ |.+++.++
T Consensus 18 l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 56899999999999999988 45566554
No 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.58 E-value=0.16 Score=54.48 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcC---c---cccccCCCCHHHHHHHHHh------hcCCcEEEEeccc
Q 024362 10 MIMDDLEMFLKR---K---DFHRRVGRGKSSLIAGMAN------FLNFDVYDLELSA 54 (268)
Q Consensus 10 ~i~~Di~~Fl~~---~---~~Y~~~GTGKTSl~~AlA~------~l~~~iy~l~ls~ 54 (268)
..+..|...|.. . .-+|+.|.|||+|+..+++ .|...++-++++.
T Consensus 135 ~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp HHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 445555555543 1 2689999999999998885 4565677777765
No 201
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.067 Score=43.22 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCc-------c----ccccCCCCHHHHHHHHHhhc
Q 024362 9 KMIMDDLEMFLKRK-------D----FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~-------~----~Y~~~GTGKTSl~~AlA~~l 43 (268)
..+...+..++... . ..|++|+|||||+.++.+..
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34555666665421 1 57899999999999999864
No 202
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.48 E-value=0.071 Score=47.88 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=32.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---------------C----CcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---------------N----FDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---------------~----~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
+||++|+|||+|+..+|... | ..++.+++.. ..+...|...+..+
T Consensus 103 i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~-~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 103 FAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG-TFRPERIMQMAEHA 166 (322)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS-CCCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC-CCCHHHHHHHHHHc
Confidence 78999999999999988642 3 5788888765 33455565555443
No 203
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.42 E-value=0.1 Score=43.86 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=29.8
Q ss_pred ccccCCCCHHHHHHHHHh----hcCCcEEEEeccccccChHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN----FLNFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~----~l~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
++|+||+|||+|+.-+|- ..+..++.+++. ++...+..-+.+
T Consensus 35 i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E---~~~~~~~~~~~~ 80 (251)
T 2zts_A 35 LTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE---ERARDLRREMAS 80 (251)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS---SCHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc---CCHHHHHHHHHH
Confidence 799999999999986653 347788888875 345555444443
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.40 E-value=0.045 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.7
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|++|+|||||+.+|++.+.
T Consensus 12 l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHSS
T ss_pred EECcCCCCHHHHHHHHHhhCC
Confidence 458999999999999999864
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.33 E-value=0.061 Score=44.20 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l 43 (268)
.+++++.-=+.+.+ ..|+.|+|||||+++||+.+
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555555455554 56999999999999999987
No 206
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.33 E-value=0.06 Score=52.40 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCcc--ccccCCCCHHHHHHHHHhhc
Q 024362 11 IMDDLEMFLKRKD--FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 11 i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l 43 (268)
.++-+..+.+... +++++|+|||+|+..|+...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 3455555555554 89999999999999988764
No 207
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.23 E-value=0.2 Score=48.47 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
-+|..|.|||+||..+++
T Consensus 157 I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 157 LHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 689999999999999996
No 208
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.08 E-value=0.052 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
+.|+||+||+|.|.-||..+|+..+
T Consensus 5 l~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 5 FLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4699999999999999999987654
No 209
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.02 E-value=0.066 Score=47.22 Aligned_cols=42 Identities=19% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc----CCcEEEEecc
Q 024362 12 MDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL----NFDVYDLELS 53 (268)
Q Consensus 12 ~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls 53 (268)
++++.-=+.+.+ ..|++|+|||+|+..||+.+ |..++.+++.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 455552244443 67999999999999999986 5568777764
No 210
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.96 E-value=0.11 Score=47.77 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=18.8
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.||++|+|||+|+..+|+..
T Consensus 136 I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.96 E-value=0.17 Score=45.64 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls 53 (268)
+.|+.|+||||++..||+.+ |..|..++..
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45788999999999999876 5677777654
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.88 E-value=0.14 Score=57.58 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHH--HhhcCcc---ccccCCCCHHHHHHHHHhh---cCCcEEEEeccccc---------------------cC--hH
Q 024362 12 MDDLE--MFLKRKD---FHRRVGRGKSSLIAGMANF---LNFDVYDLELSALL---------------------RG--NM 60 (268)
Q Consensus 12 ~~Di~--~Fl~~~~---~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls~~~---------------------~~--d~ 60 (268)
++++- -|+.+.. +|+++|||||+|+.+++.. .|..++.+++.... .. ..
T Consensus 1069 Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~ 1148 (2050)
T 3cmu_A 1069 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 1148 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHH
T ss_pred HHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHH
Confidence 34555 2565554 8999999999999998753 37888888887620 00 12
Q ss_pred HHHHHHHhcCCCeeEEEeCCccchh
Q 024362 61 ELRNLLIATENKSLLVVEDIDCSIE 85 (268)
Q Consensus 61 ~L~~lf~~~p~~~IiliEDID~~~~ 85 (268)
.+...+.....+.+|+||+|.....
T Consensus 1149 ~i~~~l~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1149 EICDALARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHHHHHhCCCCEEEECCcccccc
Confidence 2334445567799999999998743
No 213
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.85 E-value=0.07 Score=44.86 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=29.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLI 67 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~ 67 (268)
.+|++|+|||+|+..+|..+ +..++.+++.. +...+...+.
T Consensus 28 i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~---~~~~~~~~~~ 71 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE---HPVQVRQNMA 71 (247)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS---CHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC---CHHHHHHHHH
Confidence 78999999999988877643 67888887654 3445544444
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.55 E-value=0.085 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.+++++.-=+.+.+ ..|++|+|||||+.+|++.+.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 46777776666655 679999999999999999983
No 215
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.55 E-value=0.065 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.9
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
-|++|+||||++.+||..+++.++.
T Consensus 264 ~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp ESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred ECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4788999999999999999865443
No 216
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.52 E-value=0.051 Score=44.09 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.+|+.|+|||||+.||+..++-
T Consensus 31 i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 31 IVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECTTSSHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHcC
Confidence 5799999999999999998863
No 217
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.47 E-value=0.057 Score=50.30 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
.-|++|+|||+|+..||..++..|+.+
T Consensus 12 I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 12 IVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred EECCCcCcHHHHHHHHHHHcCCceecc
Confidence 358999999999999999998555443
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.44 E-value=0.05 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=20.9
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
-|++|+||||++..|| .+|+.++..
T Consensus 81 ~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred ECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4788999999999999 688876654
No 219
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.44 E-value=0.29 Score=44.99 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCcc--------ccccCCCCHHHHHHHHHhhcCC-----cEEEEeccccccChHH
Q 024362 7 VKKMIMDDLEMFLKRKD--------FHRRVGRGKSSLIAGMANFLNF-----DVYDLELSALLRGNME 61 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~--------~Y~~~GTGKTSl~~AlA~~l~~-----~iy~l~ls~~~~~d~~ 61 (268)
.++.+..-...|+.... .-|++|+|||||+.+|++.++. .+..+++.....+...
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~ 139 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK 139 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhh
Confidence 34555555667877641 4589999999999999999863 5777777664444443
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.36 E-value=0.066 Score=44.94 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.2
Q ss_pred ccccCCCCHHHHHHHHHhhcC----CcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLN----FDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~----~~iy~l~ 51 (268)
+-|++|+||||++..||..++ ++++.++
T Consensus 30 ~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 468999999999999999875 5566665
No 221
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.32 E-value=0.025 Score=46.86 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=21.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l 50 (268)
.-|.+|+||||++..||..+ ++++..+
T Consensus 14 l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 45899999999999999876 4555443
No 222
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.31 E-value=0.058 Score=46.93 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=26.0
Q ss_pred HhhcCc----cccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 17 MFLKRK----DFHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 17 ~Fl~~~----~~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
.|++.+ ..-+++|||||+++..||..||+++|.-+
T Consensus 8 ~~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~ 46 (223)
T 3hdt_A 8 RFMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDD 46 (223)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred cccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHH
Confidence 466643 25689999999999999999999987743
No 223
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.30 E-value=0.057 Score=46.57 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCc
Q 024362 8 KKMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
...+++++.--+.+.. .-|+.|+|||||+..||+.+|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3456777776565554 45899999999999999998854
No 224
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.17 E-value=0.097 Score=44.76 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=24.4
Q ss_pred cccCCCCHHHHHHHHHhhc--CCcEEEEecc
Q 024362 25 HRRVGRGKSSLIAGMANFL--NFDVYDLELS 53 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l--~~~iy~l~ls 53 (268)
-++.|+||||++..||..+ |+.+..+++.
T Consensus 20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp ECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4788999999999999776 7888888754
No 225
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.96 E-value=0.062 Score=44.14 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=18.5
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|++|+||||++..|++.+
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 46899999999999999987
No 226
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.85 E-value=0.071 Score=44.67 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=19.0
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|+.|+|||||+.+|+|.+.
T Consensus 25 l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHST
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 459999999999999999985
No 227
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.77 E-value=0.088 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVY 48 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy 48 (268)
..|+||+||||.|..||..||+..+
T Consensus 34 llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCceE
Confidence 4799999999999999999987643
No 228
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.74 E-value=0.41 Score=42.95 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=26.4
Q ss_pred ccccCCCCHHHHHHHHHhhcC-----CcEEEEecccccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSALLR 57 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~~~~ 57 (268)
.-|+.|+|||||+.+|++.++ -.|..+++.....
T Consensus 85 I~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence 458999999999999999886 2377777665333
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.71 E-value=0.076 Score=43.57 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=18.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-||+|+|||||+.+|++.+.
T Consensus 10 i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EECCTTSSHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 458999999999999999864
No 230
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.69 E-value=0.15 Score=48.75 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
+.|++|+||||++.+||+.+ |+.++.++..
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45778999999999999987 4677776653
No 231
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.66 E-value=0.2 Score=47.37 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=29.6
Q ss_pred ccccCCCCHHHHHHHHH--hhc-------CCcEEEEeccccccChHHHHHHHHhc
Q 024362 24 FHRRVGRGKSSLIAGMA--NFL-------NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA--~~l-------~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
.+|++|+|||+|+..+| ..+ +-.++.++... ......++.+...+
T Consensus 183 I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~-~~~~~rl~~~a~~~ 236 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG-TFRPVRLVSIAQRF 236 (400)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-CCCHHHHHHHHHHT
T ss_pred EEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC-ccCHHHHHHHHHHc
Confidence 57999999999999655 332 34477777655 34455555555544
No 232
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.66 E-value=0.17 Score=41.75 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.0
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++++..
T Consensus 17 ~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 17 IAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EECSTTSSHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999864
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.63 E-value=0.088 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=19.9
Q ss_pred HHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc
Q 024362 12 MDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 12 ~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l 43 (268)
++|+.-=+.+.+ .-||.|+|||||+.+|++.+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455555555554 45899999999999999987
No 234
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.58 E-value=0.058 Score=47.48 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=20.7
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~iy~ 49 (268)
.-|++|+||||++.+||..+ |+.++.
T Consensus 7 l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 7 TIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 35899999999999999974 655443
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.56 E-value=0.083 Score=43.50 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-||.|+|||||+.+|++.+.
T Consensus 6 l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHCG
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 358999999999999999874
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.42 E-value=0.09 Score=48.64 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=23.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
..||+|+|||+|+..||..++..|+..
T Consensus 15 i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred EECCCccCHHHHHHHHHHhCCCcEEec
Confidence 469999999999999999998766554
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.31 E-value=0.083 Score=44.44 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.5
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.-||+|+|||||+.+|++.+.-
T Consensus 13 l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EECCTTSCHHHHHHHHHHSTTC
T ss_pred EECcCCCCHHHHHHHHHhhCCC
Confidence 4699999999999999998853
No 238
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.25 E-value=0.31 Score=40.32 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCC--cEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF--DVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~--~iy~l~ 51 (268)
.-|.+|+|||||+.++++.+.. .+..++
T Consensus 35 i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 35 IMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 5689999999999999988643 344444
No 239
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.19 E-value=0.05 Score=45.06 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.2
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|++|+||||++..|+..++
T Consensus 6 ~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999985
No 240
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.15 E-value=0.37 Score=43.33 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcC--cc-----ccccCCCCHHHHHHHHHhhcCC-----cEEEE-eccccccChHHHHH
Q 024362 8 KKMIMDDLEMFLKR--KD-----FHRRVGRGKSSLIAGMANFLNF-----DVYDL-ELSALLRGNMELRN 64 (268)
Q Consensus 8 K~~i~~Di~~Fl~~--~~-----~Y~~~GTGKTSl~~AlA~~l~~-----~iy~l-~ls~~~~~d~~L~~ 64 (268)
-+.|+.-|..+... .. .-|++|+|||||+..|++.++. .+..+ ++.+...+.+.+..
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~ 82 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLK 82 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHH
Confidence 34566666666332 11 4589999999999999999974 34445 77664455544433
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.09 E-value=0.15 Score=44.07 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHHHHHHhhcC--CcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLN--FDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~--~~iy~l 50 (268)
+-|++|+||||++..||..++ ++++..
T Consensus 31 i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 559999999999999999996 566554
No 242
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.08 E-value=0.11 Score=45.75 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
+.|+||+|||+++..||..+|+..+..
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 679999999999999999999887654
No 243
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.99 E-value=0.094 Score=44.17 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=16.0
Q ss_pred ccccCCCCHHHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMA 40 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA 40 (268)
..|++|+|||+|+.+||
T Consensus 35 l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 67999999999999999
No 244
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.97 E-value=0.1 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=21.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~ 49 (268)
.-||+|+|||+|+.+||..++..|..
T Consensus 8 i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EECCCcCCHHHHHHHHHHhCccceee
Confidence 35899999999999999998865543
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.94 E-value=0.11 Score=46.06 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcC
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.+++++. +.+.+ .-|+.|+|||||..+|++.+.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3677777 55554 569999999999999999873
No 246
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.80 E-value=0.11 Score=45.12 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred ccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 26 RRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
|..|||||+++..++. +|+++++.|.
T Consensus 16 GgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 16 GGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred CCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 7889999999999998 9999998775
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.64 E-value=0.12 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.0
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|++|+||||++.+|+..++
T Consensus 17 l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EECCTTSCHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhCc
Confidence 459999999999999999885
No 248
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.51 E-value=0.23 Score=45.45 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
..+++++.--+.+.. .-|++|+|||||+.+|++.+ +-.|+.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 356677764444444 56899999999999999887 55666554
No 249
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.47 E-value=0.91 Score=39.33 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHhhcC--cc----ccccCCCCHHHHHHHHHhhc
Q 024362 4 DFDVKKMIMDDLEMFLKR--KD----FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 4 d~~~K~~i~~Di~~Fl~~--~~----~Y~~~GTGKTSl~~AlA~~l 43 (268)
.+..++.+..-+..+... +. ..|.+|+|||||+.++.+.-
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 15 PAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555555554443 22 67999999999999999754
No 250
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.43 E-value=0.31 Score=46.53 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEecc
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLELS 53 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls 53 (268)
.+++++ --+.+.+ ..|+.|+|||+|...||+....+...+-+.
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~ 191 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI 191 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence 467777 3344433 679999999999999999998776555443
No 251
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.39 E-value=0.3 Score=45.11 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
.+++++ --+...+ ..|+.|+|||+|+..||+...-++..+-+
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 456666 3334433 67999999999999999999887665544
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.24 E-value=0.11 Score=45.67 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=17.8
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.+|++|+|||+|+..+|+.+
T Consensus 35 i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999754
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.10 E-value=0.095 Score=44.50 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=11.6
Q ss_pred ccccCCCCHHHHHHHHH-hhcC
Q 024362 24 FHRRVGRGKSSLIAGMA-NFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA-~~l~ 44 (268)
.-|+.|+|||||+.+|+ +.+.
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECSCC----CHHHHHHC----
T ss_pred EECCCCCCHHHHHHHHHhcCCC
Confidence 45899999999999999 8864
No 254
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.98 E-value=0.13 Score=43.41 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.5
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|+.|+|||||+..||+.+
T Consensus 6 i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhhc
Confidence 46899999999999999988
No 255
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.86 E-value=0.088 Score=47.28 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.0
Q ss_pred cccCCCCHHHHHHHHHhhcC---CcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFLN---FDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~---~~iy~l~ls~ 54 (268)
-|+.|+||||++..|+..++ +.+..+++.+
T Consensus 11 tG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 11 TGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp ESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 47899999999999999876 5677777666
No 256
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.78 E-value=0.18 Score=50.65 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=25.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+-|.+|+||||++.+||..| |+++|.++
T Consensus 57 LtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 57 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 34778999999999999999 99999985
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.70 E-value=0.13 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.6
Q ss_pred cccCCCCHHHHHHHHHhhcCC
Q 024362 25 HRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.|+.|+|||||..+|||.+..
T Consensus 36 iG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp EECTTSCHHHHHHHHTTSSCC
T ss_pred ECCCCCCHHHHHHHHhcCCCC
Confidence 489999999999999998754
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.69 E-value=0.12 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||..+|+|.+.-+
T Consensus 37 iG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 4899999999999999987643
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.66 E-value=0.14 Score=42.82 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.6
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-||.|+|||||+..|++.+.
T Consensus 9 lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EECCTTSSHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhCc
Confidence 458999999999999999763
No 260
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.66 E-value=0.2 Score=42.45 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=25.8
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~ 54 (268)
+|.+|+|||+|+..+|.. +.+++++....
T Consensus 5 ~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 5 TGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred ECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 688999999999999988 88888888765
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.61 E-value=0.15 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
..|+.|+|||||..+|||.+..
T Consensus 29 liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EECCTTSSHHHHHHHHHTSSCC
T ss_pred EECCCCCCHHHHHHHHhCCCCC
Confidence 3589999999999999998754
No 262
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.36 E-value=0.26 Score=41.27 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+-|+.|+|||+|+..|+..| |+.+..+....
T Consensus 9 i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 45788999999999999876 68888877543
No 263
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.33 E-value=0.32 Score=41.37 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=27.8
Q ss_pred ccCCCCHHHHHHHHHhhc--CCcEEEEeccccccChHHHHHHHHh
Q 024362 26 RRVGRGKSSLIAGMANFL--NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l--~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
|..|+||||++..|+..| |++++...-+........++.++..
T Consensus 9 G~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~ 53 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLE 53 (205)
T ss_dssp CCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHS
T ss_pred CCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhc
Confidence 788999999999999998 6666655432211112445555543
No 264
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.31 E-value=0.16 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.4
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
-||+|+|||+|+.+||..++..|+..
T Consensus 8 ~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 8 AGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred ECcchhhHHHHHHHHHHHCCCeEeec
Confidence 48999999999999999998766543
No 265
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.24 E-value=0.23 Score=45.53 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=23.4
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.-|++|+|||||+.+||..+ |..+..++.
T Consensus 84 i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 84 ITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 56899999999999999886 666665554
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.23 E-value=0.16 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+..+
T Consensus 38 iG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 4899999999999999987653
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.18 E-value=0.35 Score=43.69 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCcc----------------ccccCCCCHHHHHHHHHhhc---CCcEEEE
Q 024362 6 DVKKMIMDDLEMFLKRKD----------------FHRRVGRGKSSLIAGMANFL---NFDVYDL 50 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~----------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l 50 (268)
..++.+.+.+...+.+.. .-|+.|+||||++..||+.+ +-.|+..
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345556666666664421 34788899999999999987 4455544
No 268
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.16 E-value=0.14 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||+.+|||.+..+
T Consensus 176 vG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTTCE
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 3689999999999999998654
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.10 E-value=0.14 Score=44.50 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.|+.|+|||||..+|+|.+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCC
Confidence 48899999999999999864
No 270
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.08 E-value=0.33 Score=44.12 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=24.5
Q ss_pred ccccCCCCHHHHHHHHHhhcC-----CcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN-----FDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~-----~~iy~l~ls~ 54 (268)
.-|+.|+|||||+.+|++.+. ..+..+....
T Consensus 95 I~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred EECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 458999999999999999885 3466666554
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.05 E-value=0.23 Score=46.42 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=23.3
Q ss_pred HHHHHhhcCcc--ccccCCCCHHHHHHHHHhhcC
Q 024362 13 DDLEMFLKRKD--FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 13 ~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
++|...+.++. +.|++|+|||||+.+|++.+.
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34444444332 568999999999999999876
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.00 E-value=0.17 Score=44.55 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+..+
T Consensus 39 iG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 4899999999999999987643
No 273
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.99 E-value=0.24 Score=45.32 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 11 IMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 11 i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+++++..-+.+.+ .-|+.|+|||||..+|++.+.-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 6677776666655 4589999999999999999753
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.98 E-value=0.15 Score=44.42 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.0
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||||..+|||.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhcCCC
Confidence 48899999999999999875
No 275
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.95 E-value=0.29 Score=46.40 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.5
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
++|+||+|||+|+..+|..+ |.++..+++..
T Consensus 208 I~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 208 VAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 46899999999999998864 66888888753
No 276
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.88 E-value=0.26 Score=44.15 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
+-|++|+|||||+.+|++....+
T Consensus 174 l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EECSTTSSHHHHHHHHSTTCCCC
T ss_pred EECCCCCcHHHHHHHhccccccc
Confidence 45889999999999999987654
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.86 E-value=0.17 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.6
Q ss_pred cccCCCCHHHHHHHHHhhcCC
Q 024362 25 HRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
-|+.|+|||||..+|+|.+..
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSCC
T ss_pred ECCCCCCHHHHHHHHhCCCcC
Confidence 488999999999999998754
No 278
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.85 E-value=0.6 Score=46.62 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=43.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC------------CCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE------------NKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p------------~~~IiliEDID~~ 83 (268)
.++++|||||.|+..||+.-+.++++.-+-. ....+..+++..++ .+++++.---|..
T Consensus 237 Ifgg~g~GKT~L~~~ia~~~~~~v~V~~~iG--ER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p 306 (600)
T 3vr4_A 237 VPGPFGAGKTVVQHQIAKWSDVDLVVYVGCG--ERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMP 306 (600)
T ss_dssp EECCTTSCHHHHHHHHHHHSSCSEEEEEEEE--ECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSC
T ss_pred eecCCCccHHHHHHHHHhccCCCEEEEEEec--ccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCC
Confidence 6788999999999999999888877665543 45567777777764 2677776665554
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.85 E-value=0.18 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.-||.|+|||||+.+|++.+..
T Consensus 21 l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EECCTTSCHHHHHHHHHHHSCT
T ss_pred EECCCCCCHHHHHHHHhccCCC
Confidence 3489999999999999998763
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.84 E-value=0.61 Score=44.83 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCcc-------------ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 6 DVKKMIMDDLEMFLKRKD-------------FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 6 ~~K~~i~~Di~~Fl~~~~-------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.+.+.+.+.|..+|.+.. +-|++|+||||++..||.++ |+.+..++.
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345567777788877521 35778999999999999877 677776664
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.84 E-value=0.27 Score=44.35 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=24.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
+.++||+|||+|+..+|... |.++..+++-
T Consensus 73 i~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 73 IAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 46899999999999998654 4678888875
No 282
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.79 E-value=0.6 Score=44.68 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 7 VKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
+.+.+.+.+..+|.+.. +-|++|+||||++..||..+ |..+..++..
T Consensus 71 v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 71 FISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 44566667777777531 34788999999999999877 7777776643
No 283
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.79 E-value=0.23 Score=44.94 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
+-++.|+||||++.++|-.+ |..+..+++.- ...+..+|..
T Consensus 19 ~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~----~~~l~~~l~~ 62 (324)
T 3zq6_A 19 IGGKGGVGKTTISAATALWMARSGKKTLVISTDP----AHSLSDSLER 62 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS----SCCHHHHHTS
T ss_pred EeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC----CcCHHHHhCC
Confidence 34678899999999998765 88999998754 2356666654
No 284
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.57 E-value=0.28 Score=48.50 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHhhcCc--cccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRK--DFHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~--~~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
|++.+++.+..=+ ... -..|+||||||+++.+++..+ +..|..+.-+.
T Consensus 181 ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 181 LNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp CCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 6777887765433 222 267999999999988877654 45677766554
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.37 E-value=0.17 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||+.+|+|.+.-+
T Consensus 40 iGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 4899999999999999988654
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.35 E-value=0.17 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.6
Q ss_pred cccCCCCHHHHHHHHHhhcCC
Q 024362 25 HRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
-|+.|+|||||..+|||.+.-
T Consensus 43 iG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSSCC
T ss_pred ECCCCCcHHHHHHHHhcCCCC
Confidence 488999999999999998754
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.32 E-value=0.2 Score=43.17 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|+|.+..+
T Consensus 40 iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCC
Confidence 35899999999999999987644
No 288
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.32 E-value=0.17 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||..+|+|.+..+
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 4889999999999999987643
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.29 E-value=0.2 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+.-+
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 4899999999999999987643
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.25 E-value=0.34 Score=44.74 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC
Q 024362 13 DDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 13 ~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+++.--+.+.. .-|+.|+|||||+.+|++.+..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 77766666665 4589999999999999998753
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.19 E-value=0.18 Score=44.40 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=22.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~l 52 (268)
..|+.|+|||||..+|||.+.-+ =.+.+
T Consensus 31 liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred EECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 34899999999999999998654 44433
No 292
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.18 E-value=0.54 Score=40.45 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.6
Q ss_pred ccccCCCCHH-HHHHHHHhhc--CCcEEEEe
Q 024362 24 FHRRVGRGKS-SLIAGMANFL--NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKT-Sl~~AlA~~l--~~~iy~l~ 51 (268)
.||+.|+||| .|..++.++. +..++.+.
T Consensus 25 iyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 25 ILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 5999999999 8999988765 67888876
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.16 E-value=0.17 Score=43.31 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhh
Q 024362 9 KMIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 9 ~~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~ 42 (268)
..+++|+ .+.+ ..|+.|+|||||..+|||.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567776 2333 5699999999999999996
No 294
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.13 E-value=0.28 Score=39.55 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.4
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+..
T Consensus 26 v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEECTTSSHHHHHHHTSCGG
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 46889999999999998765
No 295
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.07 E-value=0.44 Score=44.37 Aligned_cols=32 Identities=9% Similarity=-0.174 Sum_probs=23.7
Q ss_pred cccccCCCCHHHHHHHHHhhc-----CCcEEEEeccc
Q 024362 23 DFHRRVGRGKSSLIAGMANFL-----NFDVYDLELSA 54 (268)
Q Consensus 23 ~~Y~~~GTGKTSl~~AlA~~l-----~~~iy~l~ls~ 54 (268)
..||++|||||+|+.-+|... +-.+..++...
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 379999999999977665443 55677777544
No 296
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.01 E-value=0.21 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+..+
T Consensus 56 iG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred EcCCCCcHHHHHHHHHcCCCCC
Confidence 4899999999999999987643
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.90 E-value=0.19 Score=44.34 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-|+.|+|||||..+|+|.+.
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 48899999999999999864
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.86 E-value=0.24 Score=38.28 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++++..
T Consensus 6 v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 45889999999999999753
No 299
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.84 E-value=0.66 Score=36.85 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 28 v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 28 FVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4688999999999999876
No 300
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.83 E-value=0.51 Score=47.01 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=42.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC------------CCeeEEEeCCccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE------------NKSLLVVEDIDCS 83 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p------------~~~IiliEDID~~ 83 (268)
-++++|||||+|+..||+.-+-++++.-+-. .-..+..+++..++ .+++|+.---|..
T Consensus 232 I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iG--ER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 232 IPGPAGSGKTVTQHQLAKWSDAQVVIYIGCG--ERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp ECSCCSHHHHHHHHHHHHHSSCSEEEEEECC--SSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred eecCCCCCHHHHHHHHHhccCCCEEEEEEec--ccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 6789999999999999998877776665543 44456666666654 2677776665554
No 301
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.82 E-value=0.15 Score=44.34 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=20.2
Q ss_pred ccccCCCCHHHHHHHHHhhc-CCcE
Q 024362 24 FHRRVGRGKSSLIAGMANFL-NFDV 47 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-~~~i 47 (268)
+-|..|+||||++..||..| ++.+
T Consensus 29 ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 29 IEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999 5433
No 302
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.79 E-value=0.47 Score=45.04 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCcc---ccccCCCCHHHHHHHHHhhcCC---cEEEEe
Q 024362 10 MIMDDLEMFLKRKD---FHRRVGRGKSSLIAGMANFLNF---DVYDLE 51 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l~~---~iy~l~ 51 (268)
.++.++ +..+.. .-|+.|+|||||..+|++.+.- .|+.+.
T Consensus 157 ~~L~~l--~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 157 DNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp HHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred HHHHHH--HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 466777 344444 5699999999999999999853 566654
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.79 E-value=0.22 Score=44.00 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.1
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||..+|||.+..+
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 4889999999999999987643
No 304
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.74 E-value=0.38 Score=41.89 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=20.6
Q ss_pred ccccCCCCHHHHHHHHHhhc-------CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL-------NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-------~~~iy~l~ 51 (268)
+-|++|+||||++..|+..| |++++...
T Consensus 30 ~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 30 FEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 56999999999999999998 77776543
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.71 E-value=0.22 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+..+
T Consensus 53 iG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 4899999999999999988654
No 306
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.68 E-value=0.22 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=18.3
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||+.+|+|....+
T Consensus 8 vG~nGaGKSTLln~L~g~~~~~ 29 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVSR 29 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 4899999999999999987543
No 307
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.67 E-value=0.23 Score=41.58 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=25.3
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
++.|+|||+++..||..| |+.+..+++.-
T Consensus 7 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 577899999999999988 88999998765
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.52 E-value=0.24 Score=39.28 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++++.
T Consensus 8 lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EECSTTSSHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4689999999999999974
No 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.51 E-value=0.21 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
..|+.|+|||||..+|||.+.-
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EECCSSSSHHHHHHHHTTSSCC
T ss_pred EECCCCCCHHHHHHHHhCCCCC
Confidence 3489999999999999998754
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.50 E-value=0.25 Score=40.46 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++++..
T Consensus 10 lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHhcCC
Confidence 46899999999999999864
No 311
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.50 E-value=0.78 Score=36.86 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++.+.
T Consensus 21 ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 21 LLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEESTTSSHHHHHHHHCCS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5689999999999999976
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.49 E-value=0.21 Score=44.41 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|+|.+..+
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 4889999999999999987644
No 313
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.48 E-value=0.23 Score=45.04 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.4
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
..|+.|+|||||+..||+.+.
T Consensus 107 lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 107 VVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EECSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHHH
Confidence 458889999999999999873
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.45 E-value=0.27 Score=42.82 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=20.5
Q ss_pred cccCCCCHHHHHHHHHhhcCCcEEEE
Q 024362 25 HRRVGRGKSSLIAGMANFLNFDVYDL 50 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~iy~l 50 (268)
-|++|+|||+|+.+||...+ .++..
T Consensus 40 ~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp ECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred ECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 48899999999999999876 54443
No 315
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.45 E-value=0.34 Score=45.76 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=24.7
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls 53 (268)
.+|+||+|||+|+..+|... |.++..+++-
T Consensus 205 i~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 205 IAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 57899999999999888653 6778888875
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.43 E-value=0.24 Score=43.34 Aligned_cols=18 Identities=33% Similarity=0.183 Sum_probs=16.7
Q ss_pred cccCCCCHHHHHHHHHhh
Q 024362 25 HRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~ 42 (268)
.|+.|+|||||..+|+|.
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 489999999999999997
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.42 E-value=0.24 Score=43.79 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.|+.|+|||||..+|||.+..+
T Consensus 39 iG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 4899999999999999987654
No 318
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.41 E-value=0.54 Score=43.47 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=25.4
Q ss_pred ccccCCCCHHHHHHHHHhh---cCCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANF---LNFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~---l~~~iy~l~ls 53 (268)
+.++||+|||+|+..+|.. .|.++..+++-
T Consensus 51 IaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 51 IGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4588999999999999877 47889888875
No 319
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.37 E-value=0.57 Score=42.65 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=22.6
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
..|++|+|||||+.+|++.+ +..+..++
T Consensus 61 i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 56899999999999999876 55555554
No 320
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.37 E-value=0.58 Score=38.36 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 12 vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 12 FVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5689999999999999864
No 321
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.28 E-value=0.5 Score=44.91 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.9
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|++|+|||||+.+|+|.+
T Consensus 74 lvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEECTTSSHHHHHHHHHTCC
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 46999999999999999954
No 322
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.27 E-value=1 Score=39.91 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||..++.+.
T Consensus 8 lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 8 LIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EECCTTSSHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 4689999999999999984
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.24 E-value=0.27 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 10 v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 10 VVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4689999999999999874
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.24 E-value=0.27 Score=42.14 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.9
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-||.|+|||||+.+|++.+.
T Consensus 24 l~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EECCTTSSHHHHHHHHHHHCT
T ss_pred EECcCCCCHHHHHHHHHhhCC
Confidence 469999999999999999865
No 325
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.09 E-value=0.64 Score=40.64 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCc----ccc---ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 2 AVDFDVKKMIMDDLEMFLKRK----DFH---RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 2 iLd~~~K~~i~~Di~~Fl~~~----~~Y---~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+++...+. .+..+.+.+.+. .+. .+.|+|||+++..||..| |+.+..+++.-
T Consensus 14 ~~~~~~~~-~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~ 75 (298)
T 2oze_A 14 VMEKEELK-ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75 (298)
T ss_dssp -CCHHHHH-HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred HhhhhhHH-HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34444443 345566666543 244 477899999999999776 78999988765
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.09 E-value=0.25 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..||.|+|||||..+|||.+.-+
T Consensus 35 llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEESTTSSHHHHHHHHHTSSCCS
T ss_pred EECCCCchHHHHHHHHhcCCCCC
Confidence 35899999999999999987543
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.07 E-value=0.26 Score=37.80 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++++.
T Consensus 8 v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4688999999999999875
No 328
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.03 E-value=0.66 Score=44.16 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=25.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+.++||+|||+|+.-+|... |.++..+++-.
T Consensus 202 IaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 202 IAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45889999999999888765 77898888754
No 329
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.99 E-value=0.47 Score=38.65 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=24.2
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
...|+|||+++..||..| |..+..+++..
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456799999999998876 78999999854
No 330
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.95 E-value=0.26 Score=40.33 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.5
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|++|+|||||+.++++..
T Consensus 34 lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHhcCC
Confidence 45899999999999999864
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.94 E-value=0.23 Score=44.06 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.0
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|+.|+|||||..+|||.+
T Consensus 35 i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 35 ILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 34889999999999999987
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.93 E-value=0.3 Score=41.62 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=21.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
+-|+.|+||||++.+|++. +-.|+...
T Consensus 25 i~G~~GsGKSTl~~~L~~~-~g~v~~~~ 51 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKY-KNDICLLT 51 (230)
T ss_dssp EECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred EECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence 3488899999999999998 55666554
No 333
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.86 E-value=0.28 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+..+
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCS
T ss_pred EECCCCchHHHHHHHHhcCCCCC
Confidence 35899999999999999987643
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.85 E-value=0.29 Score=37.67 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 8 v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4689999999999999864
No 335
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.82 E-value=0.92 Score=39.62 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++.+.
T Consensus 6 lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 6 LIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEESTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 4689999999999999986
No 336
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.75 E-value=0.29 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+..+
T Consensus 46 llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCS
T ss_pred EECCCCCcHHHHHHHHhCCCCCC
Confidence 45899999999999999987643
No 337
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=86.73 E-value=0.69 Score=45.98 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=43.2
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEeccccccChHHHHHHHHhcC------------CCeeEEEeCCccch
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLELSALLRGNMELRNLLIATE------------NKSLLVVEDIDCSI 84 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ls~~~~~d~~L~~lf~~~p------------~~~IiliEDID~~~ 84 (268)
-++++|||||+|+..||+.-+.++++.-+-. ....+..+++..++ .+++++.---|...
T Consensus 226 Ifg~~g~GKT~l~~~ia~~~~~~v~V~~~iG--ER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~ 296 (578)
T 3gqb_A 226 IPGPFGSGKSVTQQSLAKWSNADVVVYVGSG--ERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPV 296 (578)
T ss_dssp ECCCTTSCHHHHHHHHHHHSSCSEEEEEEEE--ECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCH
T ss_pred eeCCCCccHHHHHHHHHhccCCCEEEEEEec--ccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCH
Confidence 5788999999999999998887876665543 45567777777653 26777776655543
No 338
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.70 E-value=0.27 Score=43.49 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=17.2
Q ss_pred cccCCCCHHHHHHHHHhhc
Q 024362 25 HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l 43 (268)
.|+.|+|||||..+|||.+
T Consensus 52 ~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECCTTSSHHHHHHHHHTCT
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 4889999999999999974
No 339
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.69 E-value=0.36 Score=41.20 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.7
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
+-|..|+||||++..||..++
T Consensus 7 ~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 7 IEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEECTTSSHHHHHHHHHHHCT
T ss_pred EEcCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999994
No 340
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.68 E-value=0.46 Score=42.69 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
+-|++|+|||||+.+|+ .+..
T Consensus 170 l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SCCC
T ss_pred EECCCCCCHHHHHHHHH-HhhC
Confidence 45889999999999999 6553
No 341
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.53 E-value=0.29 Score=38.28 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 9 i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 9 LLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EECCTTSSHHHHHHHHHCC
T ss_pred EECCCCccHHHHHHHHhcC
Confidence 4689999999999999864
No 342
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.53 E-value=0.31 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4689999999999999864
No 343
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.51 E-value=0.27 Score=39.72 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+..+++.
T Consensus 7 ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EESCTTSSHHHHHHHHTCC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4589999999999999984
No 344
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.41 E-value=0.32 Score=37.48 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 9 v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4689999999999999864
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.36 E-value=0.31 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..||.|+|||||..+|||.+.-+
T Consensus 34 llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEcCCCchHHHHHHHHHcCCCCC
Confidence 46899999999999999987643
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.34 E-value=0.31 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..||.|+|||||..+|||.+.-+
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEcCCCchHHHHHHHHHCCCCCC
Confidence 45899999999999999987643
No 347
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.33 E-value=0.31 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+..+
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCS
T ss_pred EECCCCcHHHHHHHHHHcCCCCC
Confidence 45899999999999999987543
No 348
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.31 E-value=0.32 Score=37.71 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EECCTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4588999999999999873
No 349
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.29 E-value=0.52 Score=39.98 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
...|+|||+++..||..| |+.+..+++.-
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456799999999998876 78999998864
No 350
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.29 E-value=0.66 Score=39.70 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=22.9
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+-|++|+||||++..|+..| |++++...
T Consensus 11 ~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 56899999999999999988 46665543
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.24 E-value=0.31 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+..+
T Consensus 42 llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCS
T ss_pred EECCCCChHHHHHHHHHcCCCCC
Confidence 45899999999999999987654
No 352
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.19 E-value=0.32 Score=38.79 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=17.0
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++++.
T Consensus 12 lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EECSTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5689999999999999984
No 353
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.16 E-value=0.3 Score=44.87 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=21.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+-|+.|+||||++..||+.+ +..|+...
T Consensus 134 lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34788899999999999987 44555543
No 354
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.00 E-value=0.72 Score=39.83 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc-EEEEecccc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD-VYDLELSAL 55 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~-iy~l~ls~~ 55 (268)
.-|.||+||++++..+...+|.+ +..++++++
T Consensus 16 itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 16 FSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp EEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred EECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 56899999999999999988764 777888874
No 355
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.98 E-value=0.52 Score=40.55 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.7
Q ss_pred cccCCCCHHHHHHHHHhhc--CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL--NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l--~~~iy~l~ls~ 54 (268)
-...|+|||+++..||..| |+.+..+++.-
T Consensus 34 s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~ 65 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLSKNNKVLLIDMDT 65 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHTTTSCEEEEEECT
T ss_pred eCCCCchHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3556799999999988877 78899998864
No 356
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.97 E-value=0.26 Score=38.31 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 7 ~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 7 LLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEESTTSSHHHHHHHHCCC
T ss_pred EECCCCCCHHHHHHHHcCc
Confidence 4689999999999999764
No 357
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=85.95 E-value=0.56 Score=39.26 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
...|+|||+++..||..| |+.+..+++..
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 456799999999999887 88999998864
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.92 E-value=0.32 Score=39.10 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.8
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.||+.|+|||++..||.-.+
T Consensus 28 I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 68999999999999998655
No 359
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.90 E-value=0.52 Score=43.18 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=33.0
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHhc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIAT 69 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~~ 69 (268)
-++.|+||||++.++|-.+ |..+..+++.- ...|..+|..-
T Consensus 32 sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~----~~~l~~~l~~~ 75 (349)
T 3ug7_A 32 GGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP----AHSLRDIFEQE 75 (349)
T ss_dssp ECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT----TCHHHHHHCSC
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC----CCCHHHHhCCC
Confidence 4677899999999999876 89999999764 35788888654
No 360
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.84 E-value=0.35 Score=37.51 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+.-
T Consensus 11 v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHHcCC
Confidence 46899999999999998753
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.83 E-value=0.35 Score=37.38 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++.+.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4588999999999999863
No 362
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.83 E-value=0.33 Score=37.68 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEESTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4589999999999999864
No 363
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.82 E-value=0.35 Score=37.39 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 11 v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4689999999999999863
No 364
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=85.79 E-value=0.48 Score=46.10 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.6
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
-|.||+|||+++..||.+| +++...++.
T Consensus 41 vGlpGSGKSTia~~La~~L~~~~~d~~v~s~ 71 (520)
T 2axn_A 41 VGLPARGKTYISKKLTRYLNWIGVPTKVFNV 71 (520)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence 4789999999999999988 556655554
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.78 E-value=0.34 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 7 ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4589999999999999764
No 366
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=85.71 E-value=0.37 Score=37.89 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 11 v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 11 VLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EECCTTSSHHHHHHHHHGG
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4689999999999999864
No 367
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.70 E-value=0.49 Score=48.54 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhhcCc--cccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRK--DFHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~--~~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
|++.|++.+..=+ .+. -..|+||||||+++.+++..+ +..|..+.-+.
T Consensus 357 Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn 410 (800)
T 2wjy_A 357 LNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 410 (800)
T ss_dssp CCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSH
T ss_pred CCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcH
Confidence 6778887765433 222 267999999999988877654 45666665444
No 368
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.67 E-value=0.35 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.8
Q ss_pred ccccCCCCHHHHHHHHH
Q 024362 24 FHRRVGRGKSSLIAGMA 40 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA 40 (268)
..|++|+|||||+.++.
T Consensus 14 l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EECCTTSCHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHc
Confidence 46899999999999855
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.54 E-value=0.37 Score=37.86 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 12 v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5689999999999999864
No 370
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.54 E-value=0.54 Score=42.70 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCcc-------------ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 7 VKKMIMDDLEMFLKRKD-------------FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~-------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.++.+.+-+...+.+.. .-|++|+||||++..||+.+ |..|+.++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 45556666667765421 34778899999999999987 566776654
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.52 E-value=0.37 Score=37.32 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 5 ~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 3588999999999999764
No 372
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.50 E-value=0.39 Score=47.40 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=23.9
Q ss_pred cccCCCCHHHHHHHHHhhcC----CcEEEEec
Q 024362 25 HRRVGRGKSSLIAGMANFLN----FDVYDLEL 52 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~----~~iy~l~l 52 (268)
-|.+|+||||++.+||..|+ ++++.++.
T Consensus 402 ~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 402 TGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred ecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 37789999999999999987 77888763
No 373
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.50 E-value=0.33 Score=45.06 Aligned_cols=58 Identities=22% Similarity=0.453 Sum_probs=36.1
Q ss_pred ccccCCCCHHHHHHHHHhhcC----CcEEEEeccc-c--------------ccChHHHHHHHHhc--CCCeeEEEeCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLN----FDVYDLELSA-L--------------LRGNMELRNLLIAT--ENKSLLVVEDID 81 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~----~~iy~l~ls~-~--------------~~~d~~L~~lf~~~--p~~~IiliEDID 81 (268)
.-|+.|+|||||..+|++.+. -.|+.+.=+- . ......+...+..+ ..|-||++||+-
T Consensus 128 I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCC
T ss_pred EECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCC
Confidence 569999999999999999873 3444432110 0 01112233344432 468899999985
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.47 E-value=0.37 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 11 v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 11 LLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EECCTTSCHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4689999999999999865
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.43 E-value=0.68 Score=45.31 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.5
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
-|+.|+|||||+..||+.+ +..|+...
T Consensus 299 VGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 4788999999999999987 44565543
No 376
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.40 E-value=0.63 Score=38.70 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=23.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
+-|+.|+|||||+.+|++.+ ++.+..+...
T Consensus 11 i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 45889999999999999874 5666666543
No 377
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=85.35 E-value=1.1 Score=43.90 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.5
Q ss_pred ccccCCCCHHHHH-HHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLI-AGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~-~AlA~~l~~~iy~l 50 (268)
.++++|||||+|+ ..||+.-+-+++++
T Consensus 167 Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 167 IIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp EEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred EECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 6889999999994 59999998886543
No 378
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.22 E-value=0.81 Score=46.92 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHhhcCc--cccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 3 VDFDVKKMIMDDLEMFLKRK--DFHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~--~~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
|++.|++.|..- +... -..|+||||||+++..++..+ +..|..+.-+.
T Consensus 361 Ln~~Q~~Av~~~----l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 361 LNSSQSNAVSHV----LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp CCHHHHHHHHHH----TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CCHHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 677888777543 2232 267999999999988776544 56777776665
No 379
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.20 E-value=0.51 Score=45.09 Aligned_cols=31 Identities=16% Similarity=-0.061 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
+.++||+|||+|+..+|-.. |.++..+++-.
T Consensus 247 i~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 247 VTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp EEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred EeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 57899999999999888654 66788888753
No 380
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.20 E-value=0.3 Score=43.99 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.|+.|+|||||..+|+|.+.
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCcHHHHHHHHhcCCC
Confidence 37889999999999999875
No 381
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=85.18 E-value=0.63 Score=40.21 Aligned_cols=29 Identities=28% Similarity=0.180 Sum_probs=24.5
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
++.|+|||+++..||..| |+.+..+++.-
T Consensus 26 ~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 26 GKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 556799999999999877 88999998764
No 382
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.17 E-value=1 Score=43.22 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.3
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.++++|||||+|+..||+..
T Consensus 179 IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 179 IVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EECCSSSSHHHHHHHHHHHH
T ss_pred EecCCCCChhHHHHHHHHHH
Confidence 78999999999999999865
No 383
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.14 E-value=0.32 Score=38.14 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 14 v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EECCTTSCHHHHHHHHCSC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5689999999999999863
No 384
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.11 E-value=0.49 Score=42.65 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcCc--c------------ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 7 VKKMIMDDLEMFLKRK--D------------FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~--~------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.++.+.+.+...+.+. . +.+++|+||||++..||+.+ |..+..++..-
T Consensus 72 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 72 FIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4455667777777542 1 34778899999999999888 77888877653
No 385
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=85.07 E-value=1 Score=44.13 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.1
Q ss_pred ccccCCCCHHHH-HHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSL-IAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl-~~AlA~~l~~~iy~l 50 (268)
.++++|||||+| ...||+..+-+++++
T Consensus 168 Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 195 (507)
T 1fx0_A 168 IIGDRQTGKTAVATDTILNQQGQNVICV 195 (507)
T ss_dssp EEESSSSSHHHHHHHHHHTCCTTTCEEE
T ss_pred EecCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 578899999999 469999998885533
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.06 E-value=0.4 Score=38.11 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 12 v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 12 LLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5689999999999999986
No 387
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.00 E-value=0.38 Score=37.66 Aligned_cols=19 Identities=32% Similarity=0.309 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 19 v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5799999999999999853
No 388
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.92 E-value=0.54 Score=45.85 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCc--c------------ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 7 VKKMIMDDLEMFLKRK--D------------FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~--~------------~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
..+.+.+.|...+.+. . +-+++|+||||++.+||..+ |..+..++.
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3444555566776652 1 23677899999999999776 777777765
No 389
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.92 E-value=0.26 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+.-+
T Consensus 31 llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EECCCTHHHHHHHHHHHTSSCCS
T ss_pred EECCCCccHHHHHHHHHcCCCCC
Confidence 45899999999999999987654
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=84.85 E-value=0.27 Score=48.44 Aligned_cols=29 Identities=34% Similarity=0.254 Sum_probs=23.3
Q ss_pred ccccCCCCHHHHHHHHHhhcC----CcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFLN----FDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~----~~iy~l~l 52 (268)
.-|++|+|||||+.+||+.++ ..++.++.
T Consensus 374 LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 374 FTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred EECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 458999999999999999986 45655554
No 391
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.85 E-value=0.68 Score=38.86 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=23.4
Q ss_pred ccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
...|+|||+++..||..| |..+..+++.-
T Consensus 12 ~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 12 AKGGDGGSCIAANFAFALSQEPDIHVLAVDISL 44 (245)
T ss_dssp SSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred CCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence 456799999999998876 67788888754
No 392
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.84 E-value=0.41 Score=37.53 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5699999999999999875
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.82 E-value=0.41 Score=38.32 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++++.
T Consensus 26 vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4688999999999999875
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.76 E-value=0.39 Score=38.54 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++++.
T Consensus 9 ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 9 IAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEESTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4588999999999999975
No 395
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=84.75 E-value=0.61 Score=39.43 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=24.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
+||+.|+|||+.+.-+|..+ |+.++.+.
T Consensus 13 ~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 13 IVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 68999999999999998876 88888885
No 396
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.75 E-value=0.67 Score=45.08 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHhccccCCChHHHhhhhcC-CCCHHHHHHHHH
Q 024362 181 VEELTEKVMVTPADVAERLMR-SEVPEVALRDLI 213 (268)
Q Consensus 181 Ie~li~e~~~SPAEVqg~Ll~-k~dp~~Al~~l~ 213 (268)
++.++..+..|..||..++.. ..+|+..++.+.
T Consensus 475 l~~~v~~g~~~~~ev~~~~~~~~~~p~~~~~~~~ 508 (511)
T 2oap_1 475 LELMLKRGIRNYKEVTRYIHAYYRNPELAMTKME 508 (511)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 446777888999999998884 568998887764
No 397
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.67 E-value=0.38 Score=38.22 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++.+.
T Consensus 6 v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 3588999999999999874
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.64 E-value=0.4 Score=37.59 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=17.0
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+.++.+.
T Consensus 14 v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEECTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5689999999999999875
No 399
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=84.62 E-value=1 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.3
Q ss_pred ccccCCCCHHHH-HHHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSL-IAGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl-~~AlA~~l~~~iy~l 50 (268)
.++++|||||+| ..+|++.-+-+++++
T Consensus 167 Ifg~~g~GKT~l~l~~I~n~~~~dv~~V 194 (513)
T 3oaa_A 167 IIGDRQTGKTALAIDAIINQRDSGIKCI 194 (513)
T ss_dssp EEESSSSSHHHHHHHHHHTTSSSSCEEE
T ss_pred eecCCCCCcchHHHHHHHhhccCCceEE
Confidence 688999999999 478999888886543
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.60 E-value=0.35 Score=45.62 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=17.6
Q ss_pred cccCCCCHHHHHHHHHhhcC
Q 024362 25 HRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~ 44 (268)
-||.|+|||||..+|||.+.
T Consensus 53 lGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EESTTSSHHHHHHHHHTCSE
T ss_pred ECCCCChHHHHHHHHhCCCC
Confidence 47889999999999999764
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.52 E-value=0.39 Score=41.86 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
+-|++|+|||||+.++.+.
T Consensus 8 lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 8 LVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEECSSSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5689999999999999986
No 402
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.51 E-value=0.39 Score=39.09 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 28 ~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 28 FLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 6799999999999999973
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.46 E-value=0.44 Score=37.91 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=18.0
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|++|+|||||+..+.+.+.
T Consensus 19 vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSC
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999988664
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.44 E-value=0.4 Score=44.49 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.8
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|++|+|||||+.+|++.+.
T Consensus 141 ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EECSSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhcC
Confidence 569999999999999999874
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.40 E-value=0.45 Score=37.23 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 20 v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4689999999999999874
No 406
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.40 E-value=0.63 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=26.2
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
++++-|+|||+++..||..| |+.+..+++.-
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred EECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 44888899999999888876 88999998864
No 407
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.39 E-value=1 Score=37.78 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=23.3
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
|.-|+||||.+..|+..| |+++....-+
T Consensus 7 G~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 678999999999999988 7787766544
No 408
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.39 E-value=0.27 Score=42.92 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.4
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
..||.|+|||||..|||+.+.-
T Consensus 32 i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhccccc
Confidence 4699999999999999998853
No 409
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.38 E-value=0.45 Score=37.69 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 16 v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 16 ALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4689999999999999863
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.16 E-value=0.47 Score=36.92 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 12 v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 12 ILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5689999999999999763
No 411
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.16 E-value=0.19 Score=41.08 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|++|+|||||+.+|++..
T Consensus 31 lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 31 FAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEECTTSSHHHHHTTTCCC-
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999864
No 412
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.15 E-value=0.46 Score=37.60 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
+.|++|+|||||+.++.+.-
T Consensus 9 v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHhCC
Confidence 56899999999999998643
No 413
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=84.13 E-value=0.94 Score=40.55 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=38.8
Q ss_pred ccccCCCCHHHHHHHHHhhc---CC-cEEEEeccccccChHHHHHHHHhc---CCCeeEEEeCCcc
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NF-DVYDLELSALLRGNMELRNLLIAT---ENKSLLVVEDIDC 82 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~-~iy~l~ls~~~~~d~~L~~lf~~~---p~~~IiliEDID~ 82 (268)
+||+.|+||++.+.+|+..+ ++ +...+.+.. ..+-..+..-+... ..+-||+|++.|.
T Consensus 23 ~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 23 LLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred EECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 79999999999999998865 43 323333332 23334444444433 3578999999987
No 414
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.12 E-value=0.75 Score=39.28 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+..|+|||+++..||..| |..+..+++..
T Consensus 10 ~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 10 GKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 566899999999999877 88999998764
No 415
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.99 E-value=0.48 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 13 v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 13 IMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EESCTTTTHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5689999999999999874
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.99 E-value=0.42 Score=44.54 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=21.1
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEe
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLE 51 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ 51 (268)
-|+.|+||||++..||+.+ +-.|+...
T Consensus 163 vG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4788899999999999987 44555443
No 417
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.95 E-value=1.1 Score=38.89 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHhhcCc--c----ccccCCCCHHHHHHHHHhhc
Q 024362 3 VDFDVKKMIMDDLEMFLKRK--D----FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 3 Ld~~~K~~i~~Di~~Fl~~~--~----~Y~~~GTGKTSl~~AlA~~l 43 (268)
++...++.|.+-+....... . ..|++|+|||||+.+|.+.-
T Consensus 17 l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 17 FAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45555666655555555432 1 57999999999999998753
No 418
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.94 E-value=0.44 Score=38.21 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 28 v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4689999999999999875
No 419
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=83.91 E-value=1 Score=44.30 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.6
Q ss_pred ccccCCCCHHHHH-HHHHhhcCCcEEEE
Q 024362 24 FHRRVGRGKSSLI-AGMANFLNFDVYDL 50 (268)
Q Consensus 24 ~Y~~~GTGKTSl~-~AlA~~l~~~iy~l 50 (268)
.++++|||||+|+ ..||+.-+-+++++
T Consensus 180 I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 180 IIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp EEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred EEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 6889999999995 59999999886543
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.61 E-value=0.93 Score=36.25 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=19.5
Q ss_pred hhcCcc----ccccCCCCHHHHHHHHHh
Q 024362 18 FLKRKD----FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 18 Fl~~~~----~Y~~~GTGKTSl~~AlA~ 41 (268)
++..+. ..|++|+|||||+.++.+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 455543 679999999999999995
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.58 E-value=0.23 Score=41.28 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=22.1
Q ss_pred ccccCCCCHHHHHHHHHhhcCC---cEEEEecc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF---DVYDLELS 53 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~---~iy~l~ls 53 (268)
.-++.|+|||||+..|++.+.- ..-.+.+.
T Consensus 7 IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 3478899999999999999843 35555444
No 422
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.57 E-value=0.26 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
..|+.|+|||||..+|||.+.-+
T Consensus 36 llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSSCCS
T ss_pred EECCCCCcHHHHHHHHhCCCCCC
Confidence 45899999999999999987543
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.42 E-value=0.51 Score=37.94 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 30 v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 30 LIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4689999999999999874
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.39 E-value=0.44 Score=45.79 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHhhcCcc---ccccCCCCHHHHHHHHHhhc
Q 024362 14 DLEMFLKRKD---FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 14 Di~~Fl~~~~---~Y~~~GTGKTSl~~AlA~~l 43 (268)
++.--+.+.+ .-|+.|+|||||+++|||.+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3433344444 35899999999999999987
No 425
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.28 E-value=0.73 Score=39.50 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.0
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.++-|+|||+++..||..| |+.+..+++..
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3567899999999998876 88999988764
No 426
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.26 E-value=0.77 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.1
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
.-|+||+|||||+.+|++.+
T Consensus 79 lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 56999999999999999865
No 427
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.20 E-value=0.82 Score=40.95 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcCc---------c---ccccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 7 VKKMIMDDLEMFLKRK---------D---FHRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~---------~---~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
...-+++++...+.+. . ..++.|+||||++..||+.+ +..+..++..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 74 ILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp HHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3444556666655432 1 34777899999999999987 6677777654
No 428
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.18 E-value=1.1 Score=43.71 Aligned_cols=43 Identities=7% Similarity=-0.062 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCc--c----c-cccCCCCHHHHHHHHHhhcCC-----cEEEEec
Q 024362 10 MIMDDLEMFLKRK--D----F-HRRVGRGKSSLIAGMANFLNF-----DVYDLEL 52 (268)
Q Consensus 10 ~i~~Di~~Fl~~~--~----~-Y~~~GTGKTSl~~AlA~~l~~-----~iy~l~l 52 (268)
++.+-+..++.++ . | -|.+|+||||++.+||..|+. .++.++.
T Consensus 379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 4455555565332 1 3 478899999999999999985 4555554
No 429
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.18 E-value=0.81 Score=41.67 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.8
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
.++.|+||||++..||+.+ |..|..++..
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999999999987 6777777654
No 430
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=83.13 E-value=0.4 Score=40.39 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.3
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.||+.|+||||+..||.-.|+-
T Consensus 28 I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EECCTTSSHHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999877654
No 431
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.12 E-value=0.47 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.216 Sum_probs=18.8
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||.++|+|.+.-+
T Consensus 60 iGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred EcCCCchHHHHHHHHhcCCCCC
Confidence 4788999999999999987543
No 432
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=83.09 E-value=0.39 Score=39.46 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 30 lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 30 FLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEETTSSHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 679999999999999986
No 433
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.09 E-value=0.79 Score=38.67 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=18.9
Q ss_pred ccccCCCCHHHHHHHHHhhcCCc
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
.-||.|+|||||+.+|...+.-.
T Consensus 6 i~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 6 ISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp EECCTTSSHHHHHHHHHHHCTTT
T ss_pred EECCCCCCHHHHHHHHHHhCCCC
Confidence 45899999999999998876433
No 434
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=83.02 E-value=1.1 Score=43.58 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=20.0
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.++.+|||||+|...||.....
T Consensus 157 Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 157 IFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp EEECTTSCHHHHHHHHHHHCBC
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 6788999999999999999876
No 435
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.93 E-value=0.79 Score=42.25 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=24.1
Q ss_pred ccCCCCHHHHHHHHHhhc---------CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---------NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---------~~~iy~l~ls~ 54 (268)
++-|+|||+++..||..| |..+..+|+.-
T Consensus 116 ~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 116 LKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp SSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 456699999999998875 78999999864
No 436
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=82.78 E-value=0.53 Score=37.34 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 15 v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 15 VIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4689999999999999864
No 437
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.76 E-value=0.57 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 15 v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 15 LVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4588999999999999874
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.71 E-value=0.77 Score=39.60 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=23.6
Q ss_pred ccccCCCCHHHHHHHHHhhcCCcEEEEe
Q 024362 24 FHRRVGRGKSSLIAGMANFLNFDVYDLE 51 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~~iy~l~ 51 (268)
+-|++|+||||++..|+..|+.++..+.
T Consensus 10 ~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 10 IEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp EEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 5689999999999999999998654443
No 439
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=82.65 E-value=0.46 Score=37.52 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+..+.+.
T Consensus 12 ~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 12 VLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EECCGGGCHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5689999999999999874
No 440
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=82.64 E-value=0.58 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 23 v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 23 MVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhhC
Confidence 5689999999999999864
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=82.48 E-value=0.59 Score=36.79 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 17 v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 17 LLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EECCTTSCHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 5689999999999999864
No 442
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.47 E-value=0.55 Score=37.63 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 12 v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 12 VVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5689999999999999875
No 443
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=82.43 E-value=0.6 Score=36.83 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 10 ~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4689999999999999853
No 444
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.36 E-value=0.82 Score=39.93 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=25.3
Q ss_pred cccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 25 HRRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
+++.|+|||+++..||..| |+.+..+++.-
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4677899999999999876 88999888764
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=82.21 E-value=0.61 Score=37.44 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 27 vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4588999999999999864
No 446
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.16 E-value=0.56 Score=37.35 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=17.4
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+.-
T Consensus 23 v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 23 MLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EECSTTSSHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 67999999999999998743
No 447
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.00 E-value=0.92 Score=43.17 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCcc--------------ccccCCCCHHHHHHHHHhhc----CCcEEEEeccc
Q 024362 7 VKKMIMDDLEMFLKRKD--------------FHRRVGRGKSSLIAGMANFL----NFDVYDLELSA 54 (268)
Q Consensus 7 ~K~~i~~Di~~Fl~~~~--------------~Y~~~GTGKTSl~~AlA~~l----~~~iy~l~ls~ 54 (268)
..+-+.+-+..+|.+.. +.++.|+||||++..||..| |..+..+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp THHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 34445555666665421 34677899999999999776 78888877653
No 448
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=81.96 E-value=0.64 Score=36.61 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=16.7
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 13 v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 13 TVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5689999999999999864
No 449
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.91 E-value=0.58 Score=38.80 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.2
Q ss_pred ccccCCCCHHHHHHHHHhhcC
Q 024362 24 FHRRVGRGKSSLIAGMANFLN 44 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~ 44 (268)
.-|.+|+|||||+..++..+.
T Consensus 43 ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 43 FMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 458999999999999998753
No 450
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=81.71 E-value=0.65 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 21 v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 5689999999999999864
No 451
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.67 E-value=0.35 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.8
Q ss_pred cccCCCCHHHHHHHHHhhcCCc
Q 024362 25 HRRVGRGKSSLIAGMANFLNFD 46 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l~~~ 46 (268)
-|+.|+|||||+.+|++.+..+
T Consensus 86 vG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSSCCS
T ss_pred ECCCCchHHHHHHHHHcCCCCC
Confidence 4778899999999999988653
No 452
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=81.65 E-value=0.94 Score=37.99 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.6
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.+-|+|||+++..||..| | .+..+++..
T Consensus 8 ~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 8 FKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp SSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred CCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 456899999999999876 7 898888765
No 453
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=81.63 E-value=1 Score=41.32 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=32.3
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
+-++.|+||||++.++|-.+ |..+..+++.. ...|..+|..
T Consensus 21 ~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~----~~~l~~~l~~ 64 (334)
T 3iqw_A 21 VGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP----AHNLSDAFSQ 64 (334)
T ss_dssp EECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS----SCHHHHHHTS
T ss_pred EeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC----CCChhHHhcc
Confidence 34677899999999999876 78999998763 3467777764
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=81.63 E-value=0.65 Score=37.56 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.4
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+.-
T Consensus 13 v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 13 ILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EECCTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHHcCC
Confidence 56999999999999998753
No 455
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=81.58 E-value=0.67 Score=36.72 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 23 v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5699999999999999864
No 456
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.52 E-value=1.1 Score=39.39 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.5
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
.+.|+|||+++..||..| |+.+..+++.-
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 456799999999999877 88999988765
No 457
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.51 E-value=1 Score=41.39 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=24.2
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEecc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELS 53 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls 53 (268)
+..|+||||++..||..| |..+..+++.
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 466799999999998876 8999999987
No 458
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.50 E-value=0.64 Score=39.36 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=17.6
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.+|.+..
T Consensus 34 lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EECCTTSSHHHHHHHHHTSC
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999854
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=81.36 E-value=0.68 Score=37.15 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 25 v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4688999999999999853
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.09 E-value=0.7 Score=37.22 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=17.2
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+.-
T Consensus 28 ~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EECSTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHhcCC
Confidence 56899999999999998753
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=81.09 E-value=0.65 Score=37.52 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 28 vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEECTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4588999999999999864
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=81.06 E-value=0.7 Score=37.42 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 13 IIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4589999999999999864
No 463
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.03 E-value=0.7 Score=37.37 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 33 v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5689999999999999874
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=80.95 E-value=0.72 Score=36.73 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 20 v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5689999999999999864
No 465
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=80.93 E-value=0.72 Score=37.18 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 19 v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5699999999999999864
No 466
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.92 E-value=0.67 Score=37.34 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.3
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
..|++|+|||||+.++.+.-
T Consensus 28 v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 28 IIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCcCHHHHHHHHhcCC
Confidence 45889999999999999754
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=80.91 E-value=0.72 Score=37.14 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 27 v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4688999999999999864
No 468
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=80.89 E-value=1.2 Score=38.53 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCcc-----------ccccCCCCHHHHHHHHHhhc
Q 024362 10 MIMDDLEMFLKRKD-----------FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 10 ~i~~Di~~Fl~~~~-----------~Y~~~GTGKTSl~~AlA~~l 43 (268)
.+++.+.+.|..-. .-|++|+|||||+.+|.+.-
T Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 35666666655321 45889999999999998753
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.88 E-value=0.67 Score=37.75 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=17.0
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 29 vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCcCHHHHHHHHHhC
Confidence 5689999999999999974
No 470
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.69 E-value=0.74 Score=37.43 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 33 v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 33 LAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EESSTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4688999999999999864
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.56 E-value=0.75 Score=37.38 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 25 v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 25 LIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5699999999999999864
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.54 E-value=0.7 Score=37.01 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 13 vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 13 VFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHc
Confidence 568999999999999987
No 473
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=80.51 E-value=0.37 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.-|.+|+||||++..||..+++
T Consensus 44 lvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 44 MVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EECCTTSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999998754
No 474
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.49 E-value=0.75 Score=37.15 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 26 vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCcHHHHHHHHHhC
Confidence 4688999999999999864
No 475
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=80.39 E-value=0.77 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.7
Q ss_pred cccCCCCHHHHHHHHHhh
Q 024362 25 HRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~ 42 (268)
.|++|+|||||+.++.+.
T Consensus 27 ~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHhcC
Confidence 478889999999999874
No 476
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=80.33 E-value=0.73 Score=36.41 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=16.1
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 11 ~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHc
Confidence 568999999999999984
No 477
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=80.27 E-value=0.72 Score=37.53 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.6
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 13 LIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEESTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4689999999999999864
No 478
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.24 E-value=0.65 Score=44.77 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=22.1
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEec
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLEL 52 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~l 52 (268)
.+|++|+|||+|+..+|+.+ |-.+..++.
T Consensus 286 i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 286 ATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 57999999999999999876 344444443
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.19 E-value=0.69 Score=36.93 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 26 v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 26 IVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEETTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4588899999999999875
No 480
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=80.10 E-value=1.4 Score=42.76 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.|+.+|||||+|+..||+....
T Consensus 156 Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 156 VFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp EEECTTSCHHHHHHHHHHHCBC
T ss_pred EeCCCCcChHHHHHHHHHHHHh
Confidence 6788999999999999998765
No 481
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=80.09 E-value=0.69 Score=45.67 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=22.3
Q ss_pred ccccCCCCHHHHHHHHHhhc-------CCcEEEEeccc
Q 024362 24 FHRRVGRGKSSLIAGMANFL-------NFDVYDLELSA 54 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l-------~~~iy~l~ls~ 54 (268)
..|++|||||+++.++...+ +..|..+..+.
T Consensus 169 i~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg 206 (608)
T 1w36_D 169 ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 (608)
T ss_dssp EECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh
Confidence 46999999999988776554 35666665443
No 482
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=79.91 E-value=0.53 Score=38.35 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.7
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 34 v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 34 MVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEESTTSSHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 468899999999999975
No 483
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=79.85 E-value=0.77 Score=40.08 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.9
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 10 lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 10 LAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EECCTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 5689999999999999983
No 484
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=79.84 E-value=0.84 Score=39.20 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHHHhhc---CCcEEEEeccc
Q 024362 26 RRVGRGKSSLIAGMANFL---NFDVYDLELSA 54 (268)
Q Consensus 26 ~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~ 54 (268)
...|+|||+++..||..| |..+..+++..
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 566799999999999876 78999998865
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.63 E-value=0.72 Score=44.98 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=17.5
Q ss_pred cccCCCCHHHHHHHHHhhc
Q 024362 25 HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 25 Y~~~GTGKTSl~~AlA~~l 43 (268)
-|+.|+|||||.++|||.+
T Consensus 53 vG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999976
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.50 E-value=0.5 Score=37.36 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=16.0
Q ss_pred ccccCCCCHHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMAN 41 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~ 41 (268)
..|++|+|||||+.++.+
T Consensus 23 v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 23 ILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEETTSSHHHHHHHTCC
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 679999999999999874
No 487
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=79.48 E-value=1.6 Score=40.31 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCcc--ccccCCCCHHHHHHHHHhh
Q 024362 8 KKMIMDDLEMFLKRKD--FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 8 K~~i~~Di~~Fl~~~~--~Y~~~GTGKTSl~~AlA~~ 42 (268)
-++|+..|..++.... ..|.+|+|||||+.+|.+.
T Consensus 149 i~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 149 MAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp HHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhh
Confidence 3456666666665554 5689999999999999987
No 488
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=79.46 E-value=0.57 Score=38.38 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|++|+|||||+..+++.
T Consensus 28 vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EECSTTSSHHHHHHHTCCE
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4689999999999999753
No 489
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=79.45 E-value=1.4 Score=42.70 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.7
Q ss_pred ccccCCCCHHHHHHHHHhhcCC
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF 45 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~ 45 (268)
.|+.+|+|||+|+..||+....
T Consensus 152 Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 152 IFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp EEEETTSCHHHHHHHHHHHCBC
T ss_pred EecCCCCCchHHHHHHHHHHHh
Confidence 6788999999999999999865
No 490
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=79.24 E-value=1.3 Score=40.01 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=31.5
Q ss_pred ccccCCCCHHHHHHHHHhhc---CCcEEEEeccccccChHHHHHHHHh
Q 024362 24 FHRRVGRGKSSLIAGMANFL---NFDVYDLELSALLRGNMELRNLLIA 68 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l---~~~iy~l~ls~~~~~d~~L~~lf~~ 68 (268)
+-++.|+|||+++.++|-.+ |+.+..+++.- . ..+..+|..
T Consensus 24 ~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~---~-~~l~~~l~~ 67 (329)
T 2woo_A 24 VGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP---A-HNLSDAFGT 67 (329)
T ss_dssp EECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT---T-CHHHHHHSS
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC---C-cCHHHHhCC
Confidence 34778899999999999776 88999998764 1 456666653
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=79.18 E-value=1.8 Score=37.06 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.4
Q ss_pred ccccCCCCHHHHHHHHHhhc
Q 024362 24 FHRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l 43 (268)
+-|..|+||||++..|+..|
T Consensus 8 ~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 8 IEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999988
No 492
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=79.13 E-value=0.73 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 31 vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EECSTTSSHHHHHHHHCC-
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4588899999999999764
No 493
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=79.07 E-value=0.74 Score=36.89 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.5
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 22 v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 22 MCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EECCTTSCHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5688999999999999864
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=79.05 E-value=0.77 Score=40.33 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.1
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 8 lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 8 LIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEECTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5789999999999999874
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=79.04 E-value=0.96 Score=39.29 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.8
Q ss_pred ccccCCCCHHHHHHHHHhhcCC----cEEE
Q 024362 24 FHRRVGRGKSSLIAGMANFLNF----DVYD 49 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~l~~----~iy~ 49 (268)
+-|..|+||||++..|+..|+. +++.
T Consensus 26 ~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 26 FEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 5689999999999999998754 6665
No 496
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=79.01 E-value=0.71 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.3
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
.-|+.|+|||||+.+|++.
T Consensus 23 lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 23 VVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEETTSSHHHHHHHHHC-
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4589999999999999885
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.91 E-value=0.71 Score=44.19 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=24.1
Q ss_pred HHHHHHhhcCccc-----cccCCCCHHHHHHHHHhhc
Q 024362 12 MDDLEMFLKRKDF-----HRRVGRGKSSLIAGMANFL 43 (268)
Q Consensus 12 ~~Di~~Fl~~~~~-----Y~~~GTGKTSl~~AlA~~l 43 (268)
+.++.-=+.+... -|++|+|||||+.+|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 5666655555544 4999999999999999974
No 498
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=78.84 E-value=0.87 Score=36.77 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=16.2
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 25 ~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EECSTTSSHHHHHHHHHC-
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5689999999999999864
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.81 E-value=0.86 Score=36.59 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 23 v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 23 VVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEECTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4688999999999999975
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=78.72 E-value=0.84 Score=38.18 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.8
Q ss_pred ccccCCCCHHHHHHHHHhh
Q 024362 24 FHRRVGRGKSSLIAGMANF 42 (268)
Q Consensus 24 ~Y~~~GTGKTSl~~AlA~~ 42 (268)
..|++|+|||||+.++.+.
T Consensus 34 vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 34 LSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EECSTTSSHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5689999999999999874
Done!