Your job contains 1 sequence.
>024366
MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP
FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN
VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG
GYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDR
RRSPDYGRNRSPNFGRYRSRSPVRRSRT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024366
(268 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 856 1.4e-85 1
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 786 3.8e-78 1
TAIR|locus:2131864 - symbol:RS40 "arginine/serine-rich sp... 664 3.2e-65 1
TAIR|locus:2173088 - symbol:RS41 "arginine/serine-rich sp... 651 7.6e-64 1
DICTYBASE|DDB_G0275409 - symbol:DDB_G0275409 "RNA-binding... 242 6.8e-22 2
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 179 2.8e-20 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 179 2.8e-20 2
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 190 2.1e-18 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 212 2.5e-17 1
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 212 2.5e-17 1
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 182 2.9e-17 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 182 2.9e-17 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 211 3.2e-17 1
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 209 5.3e-17 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 174 7.2e-17 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 207 8.6e-17 1
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 207 8.6e-17 1
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 207 8.6e-17 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 178 9.2e-17 2
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 205 1.4e-16 1
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 205 1.4e-16 1
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 204 1.8e-16 1
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 204 1.8e-16 1
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 204 1.8e-16 1
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 204 1.8e-16 1
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 204 1.8e-16 1
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 204 1.8e-16 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 203 2.3e-16 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 203 2.3e-16 1
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 202 2.9e-16 1
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 201 3.7e-16 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 200 4.7e-16 1
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 200 4.7e-16 1
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 199 6.0e-16 1
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 197 9.8e-16 1
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 197 9.8e-16 1
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 204 1.1e-15 1
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 204 1.1e-15 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 204 1.2e-15 1
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 203 1.5e-15 1
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 172 1.5e-15 2
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 193 2.6e-15 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 167 3.0e-15 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 195 1.1e-14 1
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 168 1.1e-14 2
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 154 1.8e-14 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 166 2.1e-14 2
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 184 2.3e-14 1
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 167 3.3e-14 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 166 5.5e-14 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 166 5.5e-14 2
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 152 9.6e-14 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 178 1.0e-13 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 158 1.0e-13 2
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 164 1.4e-13 2
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 167 1.9e-13 2
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 174 2.7e-13 1
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 156 5.3e-13 2
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 170 7.1e-13 2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 169 9.1e-13 1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 170 1.1e-12 2
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 170 1.1e-12 2
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 170 1.1e-12 2
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 168 1.2e-12 1
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 168 1.2e-12 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 168 1.2e-12 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 168 1.2e-12 1
UNIPROTKB|H0YIB4 - symbol:SRSF9 "Serine/arginine-rich-spl... 142 1.3e-12 2
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 167 1.7e-12 2
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 167 1.8e-12 2
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 170 1.8e-12 2
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 166 1.9e-12 1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 170 2.3e-12 2
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 170 2.3e-12 2
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 170 2.3e-12 2
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 165 2.4e-12 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 165 2.4e-12 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 164 3.1e-12 1
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 149 3.5e-12 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 135 3.8e-12 2
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 135 3.8e-12 2
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 135 3.8e-12 2
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 135 3.8e-12 2
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 135 3.8e-12 2
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 135 3.8e-12 2
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 170 4.1e-12 1
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 120 4.8e-12 2
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 134 5.0e-12 2
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 167 9.2e-12 2
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 167 9.2e-12 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 169 1.2e-11 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 158 1.3e-11 1
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 141 1.4e-11 2
FB|FBgn0011640 - symbol:lark "lark" species:7227 "Drosoph... 171 1.4e-11 1
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 167 2.1e-11 1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 172 2.1e-11 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 170 2.2e-11 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 147 2.3e-11 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 155 2.8e-11 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 153 4.5e-11 1
WARNING: Descriptions of 498 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 171/257 (66%), Positives = 198/257 (77%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++RRLSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V
Sbjct: 62 YEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVT 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDR SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRS 181
Query: 181 ---GYGRHXXXXXXXXXXXXXXX--XXDYGRGRSPAYDRYNGPV-YDQRRSPDHGRHRSP 234
Y R DYGR RSP YDRY GP Y++RRSPD+GR S
Sbjct: 182 LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSD 241
Query: 235 VPVYDRRRSPDYGRNRS 251
Y R+RSP Y R RS
Sbjct: 242 ---YGRQRSPGYDRYRS 255
Score = 118 (46.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNF 254
D GRSP R PVY +R SPD+GR P P RR SPDYGR RSP +
Sbjct: 171 DRNGGRSPR--RSLSPVYRRRPSPDYGRR--PSPGQGRRPSPDYGRARSPEY 218
Score = 109 (43.4 bits), Expect = 0.00066, P = 0.00066
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSPNFG 255
Y R SP Y R P +R SPD+GR RSP YDR + P Y R RSP++G
Sbjct: 186 YRRRPSPDYGRRPSPGQGRRPSPDYGRARSPE--YDRYKGPAAYERRRSPDYG 236
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 159/254 (62%), Positives = 192/254 (75%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R ++VGNF+Y+TR S+LERLFSK+GR++RVDMKSG+AFVYFED+RDA DAIR DN FG
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFG 61
Query: 63 YDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
Y RR+LSVEWA+ GERG+ RDG K+++NQRPTKTLFVINFDPIRTRERD++RHFEPYG
Sbjct: 62 YGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VL+VR+RRNFAFVQF TQE+ATKAL+ST SKL+D+V+SVEYAL++ ER+DRY RR
Sbjct: 121 KVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSRR 180
Query: 180 GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV-YDQRRSPDHGRHRSPVPVY 238
DY R RSP YDRY GP Y++R+SPD+GR S
Sbjct: 181 ---------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYG-R 230
Query: 239 DRRRSPDYGRNRSP 252
R RSP Y R+RSP
Sbjct: 231 ARARSPGYDRSRSP 244
Score = 119 (46.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN---------RSPNF 254
R SP Y R P Y +RRSP++ R++ P P Y+RR+SPDYGR RSP +
Sbjct: 182 RSPSPVYRRRPSPDYTRRRSPEYDRYKGPAP-YERRKSPDYGRRSSDYGRARARSPGY 238
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 137/256 (53%), Positives = 174/256 (67%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 61
Query: 63 YDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RRL VEW + ERG R GS+ S ++ RP+KTLFVINFD TR RD+++HFEPY
Sbjct: 62 RKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPY 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VISVEYA+KDD R + + SP
Sbjct: 122 GKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH-SPE 180
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R DYGRG SP Y +R SPD+GR RSP P
Sbjct: 181 RRRDRSPERRRRSPSPYKRERGSPDYGRGASPVA-AYR----KERTSPDYGRRRSPSPYK 235
Query: 239 DRRR-SPDYGRNRSPN 253
RR SP+YGR+R N
Sbjct: 236 KSRRGSPEYGRDRRGN 251
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 136/252 (53%), Positives = 171/252 (67%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERG-RHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG R G +S + RP+KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP-AYDRYNGPVYDQRRSPDHGR-HRSPVPV 237
DYGRG SP A+ R +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR-------ERTSPDYGRGRRSPSPY 233
Query: 238 YDRRRSPDYGRN 249
R SPDY R+
Sbjct: 234 KRARLSPDYKRD 245
>DICTYBASE|DDB_G0275409 [details] [associations]
symbol:DDB_G0275409 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0275409 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_001134599.1 ProteinModelPortal:Q1ZXL1
EnsemblProtists:DDB0233346 GeneID:8619946 KEGG:ddi:DDB_G0275409
eggNOG:NOG288151 InParanoid:Q1ZXL1 OMA:DIKNGYA Uniprot:Q1ZXL1
Length = 737
Score = 242 (90.2 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR-IERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN +T ++E LF Y + IE+VD+K+G+AFV + D ++ L F
Sbjct: 142 IFVGNLPRDTIVKDIENLFKNYVKSIEKVDIKNGYAFVIVSTN-DPDIVVKELHRKEFL- 199
Query: 64 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
+ L+V+ A+ E + ++ S+ + +P++ +F++N++ +T DI PYGNV
Sbjct: 200 -NKSLTVQIAKSE-SKKKEESEEV---KPSRAIFIVNYNVSKTTTNDIADWCSPYGNVNR 254
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY---ALKDDSERDDRYDS 176
V++ +NF FV+FET ++A+KAL++ D ++VEY ++ D+ + DRY S
Sbjct: 255 VQMVKNFCFVEFETIDQASKALKALDLKSFDGHSLTVEYVNGSIDRDNYQRDRYGS 310
Score = 151 (58.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
+P++ +F++N++ +T DI PYGNV V++ +NF FV+FET ++A+KAL++ D
Sbjct: 222 KPSRAIFIVNYNVSKTTTNDIADWCSPYGNVNRVQMVKNFCFVEFETIDQASKALKALDL 281
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSP 210
++VEY + +RD+ Y R YG + + + R
Sbjct: 282 KSFDGHSLTVEY-VNGSIDRDN-YQRDR---YGSNHFNHNLYHNHHFNYHHHSHQQYR-- 334
Query: 211 AYDRYNGPVYDQRRSPDHGRHR 232
D YN R P H H+
Sbjct: 335 --DNYNN-----HRHPHHHNHQ 349
Score = 48 (22.0 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 221 DQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRSPN 253
D++RS H GR RS DRR + +Y N + N
Sbjct: 623 DKKRSRSHSRGRSRSRSHSGDRRNN-NYNNNNTNN 656
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 179 (68.1 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R+ E+E +F KYGRI+ VD+KSG FAFV FED RDA DA+R D
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 61 FGYDRRRLSVEWARG 75
F D RR+ VE+ RG
Sbjct: 71 F--DGRRIRVEFTRG 83
Score = 85 (35.0 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 151
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 152 KLVDRVISVEY 162
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 75 (31.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 40/164 (24%), Positives = 54/164 (32%)
Query: 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAF 132
RG RG R G QR T ++ P +D+K H G+V + + R+
Sbjct: 106 RGGRGGGRGGGP----QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGV 161
Query: 133 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXX 192
V+F E+ A+ D +K Y R+D GG GR
Sbjct: 162 VEFTRYEDVKYAVRKLDDTKFRSHEGETAYI----RVREDNSSGGGSGGGGRDRSRSRSP 217
Query: 193 XXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R RS + R RSP RSP P
Sbjct: 218 RAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPS----RSPSP 257
Score = 70 (29.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 179 (68.1 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R+ E+E +F KYGRI+ VD+KSG FAFV FED RDA DA+R D
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 61 FGYDRRRLSVEWARG 75
F D RR+ VE+ RG
Sbjct: 71 F--DGRRIRVEFTRG 83
Score = 85 (35.0 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 151
++V N P RE++++ F YG + +V I+ FAFV+FE +A A+ + D
Sbjct: 11 VYVGNL-PGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 152 KLVDRVISVEY 162
+ R I VE+
Sbjct: 70 EFDGRRIRVEF 80
Score = 75 (31.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 40/164 (24%), Positives = 54/164 (32%)
Query: 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAF 132
RG RG R G QR T ++ P +D+K H G+V + + R+
Sbjct: 106 RGGRGGGRGGGP----QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGV 161
Query: 133 VQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXX 192
V+F E+ A+ D +K Y R+D GG GR
Sbjct: 162 VEFTRYEDVKYAVRKLDDTKFRSHEGETAYI----RVREDNSSGGGSGGGGRDRSRSRSP 217
Query: 193 XXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R RS + R RSP RSP P
Sbjct: 218 RAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPS----RSPSP 257
Score = 70 (29.7 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 20/51 (39%), Positives = 23/51 (45%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
D R RSP +R P Y RRS R RS R RS +RSP+
Sbjct: 210 DRSRSRSPRAERRASPKYSPRRSRSRSRSRSR----SRSRSASRSPSRSPS 256
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 190 (71.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 60/191 (31%), Positives = 88/191 (46%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ +++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKDD 167
D+K H G+V + + R+ V+F +E+ T A+ D +K Y +K D
Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 168 SERDDRYDSPR 178
R Y R
Sbjct: 196 GPRSPSYGRSR 206
Score = 46 (21.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 239 DRRRSPDYGRNRS 251
D RSP YGR+RS
Sbjct: 195 DGPRSPSYGRSRS 207
Score = 39 (18.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 221 DQRRSPDHGRHRS 233
D RSP +GR RS
Sbjct: 195 DGPRSPSYGRSRS 207
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 77/265 (29%), Positives = 107/265 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
S R S R R +S + R P Q+R
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 242
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRS 251
R +SP V DR+RS R+RS
Sbjct: 243 S-SRSKSPASV-DRQRSRSRSRSRS 265
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 77/265 (29%), Positives = 107/265 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
S R S R R +S + R P Q+R
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 242
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRS 251
R +SP V DR+RS R+RS
Sbjct: 243 S-SRSKSPASV-DRQRSRSRSRSRS 265
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 182 (69.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 46/111 (41%), Positives = 58/111 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDIKR 113
RL VE ARG+ RG R GS+S +R P R +R RD KR
Sbjct: 64 SMRLVVEMARGKPRGNDRHGSRS-PRRRSRSPRRRSRTPPRRRSRSRDRKR 113
Score = 132 (51.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 163 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
Score = 43 (20.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 208 RSPAYDRYNGPVYDQRRSP----DHGRHRSPVPVY---DRRRSPDYGRNRS 251
RSP+ R + RSP D R RS P DR+RS GR+ S
Sbjct: 139 RSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHS 189
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 182 (69.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 46/111 (41%), Positives = 58/111 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDIKR 113
RL VE ARG+ RG R GS+S +R P R +R RD KR
Sbjct: 64 SMRLVVEMARGKPRGNDRHGSRS-PRRRSRSPRRRSRTPPRRRSRSRDRKR 113
Score = 132 (51.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 42/153 (27%), Positives = 63/153 (41%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
P RERD++R + YG + ++ ++ FAFV FE +A A D + + +
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVV 69
Query: 163 ALKDDSER-DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
+ R +DR+ S PRR R RS + R PV
Sbjct: 70 EMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPV 129
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
+ RR + RSP P D +R + R+RSP
Sbjct: 130 RESRRRSES---RSPSPKRDLKR--EASRSRSP 157
Score = 43 (20.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 208 RSPAYDRYNGPVYDQRRSP----DHGRHRSPVPVY---DRRRSPDYGRNRS 251
RSP+ R + RSP D R RS P DR+RS GR+ S
Sbjct: 139 RSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRSVSRGRSHS 189
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 77/270 (28%), Positives = 110/270 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQ-RRS 225
S R S R R RS + PV ++ ++
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKR 242
Query: 226 PDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
R +SP V DR+RS R+RS + G
Sbjct: 243 GSSSRSKSPASV-DRQRSRSRSRSRSVDSG 271
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 74/247 (29%), Positives = 103/247 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGS----------KSMANQRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G + R ++ +++ P +
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 191
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR Y RS RY SP H
Sbjct: 192 ----KVDGPRSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY---------SPRH 238
Query: 229 GRHRSPV 235
R RSPV
Sbjct: 239 SRSRSPV 245
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 174 (66.3 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 41/93 (44%), Positives = 56/93 (60%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN 89
D + +D RL VE A G R R D ++ N
Sbjct: 66 DG--YDFDGHRLRVELAHGGR-RSSDDTRGSFN 95
Score = 134 (52.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 72/242 (29%), Positives = 98/242 (40%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPF-GYDRR-------RLSVEWARGE-----RGRHR-- 81
G+AFV F+D RDA DAI G D F G+ R R S + RG RG R
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGR 105
Query: 82 -DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-------FV 133
DG ++R + V P +D+K H G+V ++ R+ +
Sbjct: 106 GDGGSRGPSRRSEFRVLVTGL-PSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYT 164
Query: 134 QFETQEEATKALESTD-RSKLVDRVISV-EYALKDDSERDDRYDSPRRG-GYGRHXXXXX 190
+E + A K L+ T+ R+ + + V EY DS +D R SP RG Y +
Sbjct: 165 CYEDMKYALKKLDDTEFRNAFSNGYVRVREY----DSRKDSR--SPSRGRSYSK------ 212
Query: 191 XXXXXXXXXXXXDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN 249
R RS + R P RRSP RSP P + RSP R+
Sbjct: 213 ----SRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRS 267
Query: 250 RS 251
RS
Sbjct: 268 RS 269
Score = 90 (36.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---R--NFAFVQFETQEEATK 143
+ R ++T++V N P RER+++ F YG V+ + ++ R +AFV+F+ +A
Sbjct: 2 SSRSSRTVYVGNL-PGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 144 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 183
A+ D + VE A DD S GG G
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRG 100
Score = 62 (26.9 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 18/48 (37%), Positives = 21/48 (43%)
Query: 205 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
GR S + R G + RS R RSP RRSP +RSP
Sbjct: 207 GRSYSKSRSRSRGRSVSRSRSRSRSRSRSP-KAKSSRRSPAKSTSRSP 253
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 78/269 (28%), Positives = 109/269 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
R R S R R +S + R P Q+R
Sbjct: 183 HRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGS 241
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
R +SP V DR+RS R+RS + G
Sbjct: 242 S-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 78/269 (28%), Positives = 109/269 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
R R S R R +S + R P Q+R
Sbjct: 183 HRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGS 241
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
R +SP V DR+RS R+RS + G
Sbjct: 242 S-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 78/269 (28%), Positives = 109/269 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
R R S R R +S + R P Q+R
Sbjct: 183 HRSRS-RSRSRTRSSSRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGS 241
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
R +SP V DR+RS R+RS + G
Sbjct: 242 S-SRSKSPASV-DRQRSRSRSRSRSVDSG 268
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 178 (67.7 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 58/179 (32%), Positives = 89/179 (49%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR ++VG Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLN--- 56
Query: 61 FGYDR--RRLSVEWARGER--GRHRDGSKSM--------ANQR---PTKT---LFVINFD 102
G D +R+ VE G+R G +R G + R PT+T L V N
Sbjct: 57 -GKDLCGKRVIVEHTIGQRRDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLS 115
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + R+N ++F + +ALE D +++ R I
Sbjct: 116 S-RCSWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 173
Score = 118 (46.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
R RE+D++R F+ YG +L V ++ + FV+F+ +A A+ + L + + VE+ +
Sbjct: 12 RAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTI 71
Query: 165 ---KDDSERDDRYDSPRRGGYG 183
+D R R + RGG G
Sbjct: 72 GQRRDGGNRSGRSNRYGRGGGG 93
Score = 53 (23.7 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 205 GRGRSPAYDRYNG---PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
G RS A+ R P DQRR R RS RS Y R+RS
Sbjct: 312 GTHRSRAHSRSRSQTPPNADQRRE-SRSRSRSRSKSRSHSRSQSYSRSRS 360
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 74/247 (29%), Positives = 102/247 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRSPV 235
R RS +
Sbjct: 242 SRSRSHI 248
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 74/247 (29%), Positives = 102/247 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRSPV 235
R RS +
Sbjct: 242 SRSRSHI 248
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 62/190 (32%), Positives = 94/190 (49%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWAR--GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R G RG G +S R + +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-- 174
G+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHEGETSY-IRVYPERSTSYGY 192
Query: 175 DSPRRGGYGR 184
R G GR
Sbjct: 193 SRSRSGSRGR 202
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 75/252 (29%), Positives = 107/252 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG+ R+ ++E+ F YGRI + +K+GF FV FED RDA DAI L+ D
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL-CD 64
Query: 65 RRRLSVEWARGERGRHRDGSK-SMANQR-------PTKTLFVINFDPIRTRE--RDIKRH 114
RR+++E AR RGR R + S +Q P +T I + + +R +D+K
Sbjct: 65 ERRVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSSRISWQDLKDV 124
Query: 115 FEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 171
G V +V R RN V+F + + ALE D ++L R I L +D R
Sbjct: 125 MRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRRIK----LIEDHRRH 180
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRH 231
R S R R R R+P Y Q+
Sbjct: 181 SRSRSRSRS---RSRSRSRSRSRSRSRSRSRSRSRSRTPKKS------YSQKSHRSSLPA 231
Query: 232 RSPVPVYDRRRS 243
SP P +R+S
Sbjct: 232 SSPSPSSSKRKS 243
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 74/245 (30%), Positives = 101/245 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----------TKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G P ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV--- 192
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDH 228
+ D PR YGR R SP R P Y SP H
Sbjct: 193 ----KVDGPRSPSYGRSRSRSRSRSRNRSRSNSRS--RSYSPRRSR-GSPRY----SPRH 241
Query: 229 GRHRS 233
R RS
Sbjct: 242 SRSRS 246
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 63/191 (32%), Positives = 93/191 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWAR--GERGRH-RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ Y + RL VE+ R G RG R G +R + V P + + D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ-DLKDHMR 132
Query: 117 PYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY- 174
G+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 133 EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY-IRVYPERSTSYG 191
Query: 175 -DSPRRGGYGR 184
R G GR
Sbjct: 192 YSRSRSGSRGR 202
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 62/191 (32%), Positives = 92/191 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ Y + RL VE+ R G G R G +R + V P + + D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ-DLKDHMR 132
Query: 117 PYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY- 174
G+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 133 EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY-IRVYPERSTSYG 191
Query: 175 -DSPRRGGYGR 184
R G GR
Sbjct: 192 YSRSRSGSRGR 202
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 62/191 (32%), Positives = 92/191 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ Y + RL VE+ R G G R G +R + V P + + D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ-DLKDHMR 132
Query: 117 PYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY- 174
G+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 133 EAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY-IRVYPERSTSYG 191
Query: 175 -DSPRRGGYGR 184
R G GR
Sbjct: 192 YSRSRSGSRGR 202
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 61/190 (32%), Positives = 95/190 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 75
Query: 60 PFGYDRRRLSVEWAR--GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R G RG G+++ R + +++ P +D+K H
Sbjct: 76 -YDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 134
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-- 174
G+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 135 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY-IRVYPERSTSYGY 193
Query: 175 DSPRRGGYGR 184
R G GR
Sbjct: 194 SRSRSGSRGR 203
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 59/188 (31%), Positives = 91/188 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ A G RG S++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY--DS 176
+V + ++++ V++ +E+ AL D +K Y ++ ER Y
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY-IRVYPERGTSYGCSR 194
Query: 177 PRRGGYGR 184
R G GR
Sbjct: 195 SRSGSRGR 202
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 83/269 (30%), Positives = 121/269 (44%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SG--FAFVYFEDDRDAADAIRG 55
+SR I+VGN ++E F KYG I + D+K SG FAF+ FED RDAADAI+
Sbjct: 7 VSR-IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKE 65
Query: 56 LDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPT--KTLFVINFD--PIRTRER 109
D F ++ R+ V + E GR+ R G + M ++ P + +V+ PI +
Sbjct: 66 KDGCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQ 125
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE----STDRSKLVDRV-ISVEYA 163
D+K H G H + ++ V F +++ +A++ S RS ++ IS+
Sbjct: 126 DLKDHLREAGECGHADVFKDGTGEVSFFNKDDMLEAIDKFNGSIFRSHEGEKSKISIRQK 185
Query: 164 LKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXX-DYGRGRSPAYDRYNGPVYDQ 222
K RDD GGYGR+ Y R RS +Y + Y +
Sbjct: 186 -KTLWRRDD-------GGYGRYNSRHRSYSSRSYSRSGKRSYTRSRSRSYSSRS---YSR 234
Query: 223 RRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RS R RS DRRR Y + RS
Sbjct: 235 SRSSS-SRSRSRS--MDRRRDT-YDKKRS 259
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 83/269 (30%), Positives = 121/269 (44%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SG--FAFVYFEDDRDAADAIRG 55
+SR I+VGN ++E F KYG I + D+K SG FAF+ FED RDAADAI+
Sbjct: 7 VSR-IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKE 65
Query: 56 LDNIPFGYDRRRLSVEWARGERGRH--RDGSKSMANQRPT--KTLFVINFD--PIRTRER 109
D F ++ R+ V + E GR+ R G + M ++ P + +V+ PI +
Sbjct: 66 KDGCDFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQ 125
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALE----STDRSKLVDRV-ISVEYA 163
D+K H G H + ++ V F +++ +A++ S RS ++ IS+
Sbjct: 126 DLKDHLREAGECGHADVFKDGTGEVSFFNKDDMLEAIDKFNGSIFRSHEGEKSKISIRQK 185
Query: 164 LKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXX-DYGRGRSPAYDRYNGPVYDQ 222
K RDD GGYGR+ Y R RS +Y + Y +
Sbjct: 186 -KTLWRRDD-------GGYGRYNSRHRSYSSRSYSRSGKRSYTRSRSRSYSSRS---YSR 234
Query: 223 RRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RS R RS DRRR Y + RS
Sbjct: 235 SRSSS-SRSRSRS--MDRRRDT-YDKKRS 259
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 204 (76.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 74/270 (27%), Positives = 119/270 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGER--GRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERD 110
R+ VE ARG R G + G +R PT+T + + + + +R +D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K + G V + + R+N ++F + + +ALE D +++ R I + K
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPG 178
Query: 168 SERDDRYDSPR---RG-GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQR 223
S R Y R R RH R RS ++ R Q
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
RS + +S P D + R+RSP+
Sbjct: 239 RSRSK-KEKSRSPSKDNKSR---SRSRSPD 264
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 204 (76.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 74/270 (27%), Positives = 119/270 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGER--GRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERD 110
R+ VE ARG R G + G +R PT+T + + + + +R +D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K + G V + + R+N ++F + + +ALE D +++ R I + K
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPG 178
Query: 168 SERDDRYDSPR---RG-GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQR 223
S R Y R R RH R RS ++ R Q
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
RS + +S P D + R+RSP+
Sbjct: 239 RSRSK-KEKSRSPSKDNKSR---SRSRSPD 264
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 204 (76.9 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 71/264 (26%), Positives = 117/264 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGER--GRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERD 110
R+ VE ARG R G + G +R PT+T + + + + +R +D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K + G V + + R+N ++F + + +ALE D +++ R I + K
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPG 178
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
S R Y R R + + RS + R + RS
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRS--RSGSRSRSKSRSRS 236
Query: 228 HGRHRSPVPVYDRRRSPDYGRNRS 251
R RS ++ RSP ++RS
Sbjct: 237 QSRSRSKK---EKSRSPSKDKSRS 257
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 203 (76.5 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 71/264 (26%), Positives = 117/264 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGER--GRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERD 110
R+ VE ARG R G + G +R PT+T + + + + +R +D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K + G V + + R+N ++F + + +ALE D +++ R I + K
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPG 178
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
S R Y R R + + RS + R + RS
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRS--RSGSRSRSKSRSRS 236
Query: 228 HGRHRSPVPVYDRRRSPDYGRNRS 251
R RS ++ RSP ++RS
Sbjct: 237 QSRSRSKK---EKSRSPSKEKSRS 257
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 172 (65.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 65 RRRLSVEWARGE-RGRHRDGSK 85
R++VE +RG RG +GS+
Sbjct: 71 GSRITVEASRGAPRGSRDNGSR 92
Score = 93 (37.8 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE +
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
Query: 165 KDDSERDDRYDSPRRG---GYGR 184
+ R R D+ RG G GR
Sbjct: 81 --GAPRGSR-DNGSRGPPPGSGR 100
Score = 53 (23.7 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 206 RGRSPAYDR-YN-GPVYDQRRSPDHGRHRSPVPVYDRRRSPD-YGRNRSP 252
R RSP+ R Y+ G Y + RSP R +S V DR RSP R+ SP
Sbjct: 163 RRRSPSRSRSYSRGRSYSRSRSPVR-REKS---VEDRSRSPKAMERSVSP 208
Score = 49 (22.3 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 211 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
+Y R PV + RSP R S Y R RS Y R+RSP
Sbjct: 150 SYSR--SPV--KSRSPRRRRSPSRSRSYSRGRS--YSRSRSP 185
Score = 48 (22.0 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 16/37 (43%), Positives = 17/37 (45%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 244
RSP R P +RRSP R S Y R RSP
Sbjct: 153 RSPVKSR--SP--RRRRSPSRSRSYSRGRSYSRSRSP 185
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 74/261 (28%), Positives = 101/261 (38%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE------RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRER 109
R +++E AR RGR+ D S+ N R P +T L V N R +
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS-RVSWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
D+K G V R N V+F + + A+E ++ R I + K
Sbjct: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
S R S R R +S + R P Q+R
Sbjct: 183 HSRSRSRSRSRTRSSSRSRSRSRSRRSKSYSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 242
Query: 227 DHGRHRSPVPVYDRRRSPDYG 247
R RS R RS D G
Sbjct: 243 S-SRSRSRSRSRSRSRSVDSG 262
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 167 (63.8 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 116 (45.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 69 (29.3 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 38/175 (21%), Positives = 66/175 (37%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T + + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +EY + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEYKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDYGRGRSPAYDRYNGPVYDQRRSP--DHGRHRSPVPVYDRRRSPD-YGRNRS 251
+GRS + + + P D G H + R RS D YG++RS
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHS-----HSRSRSKDKYGKSRS 274
Score = 49 (22.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 195 (73.7 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 72/267 (26%), Positives = 116/267 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGER--GRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERD 110
R+ VE ARG R G + G +R PT+T + + + + +R +D
Sbjct: 60 LCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQD 119
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K + G V + + R+N ++F + + +ALE D +++ R I + K
Sbjct: 120 LKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPG 178
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
S R Y R R + + RS + R + RS
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRS--RSGSRSRSKSRSRS 236
Query: 228 HGRHRSPVPVYDRR---RSPDYGRNRS 251
R RS R RS D R++S
Sbjct: 237 QSRSRSKKEKSRSRSHSRSADKRRSKS 263
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 168 (64.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 65 RRRLSVEWARGERGRHRD 82
R++VE++RG RD
Sbjct: 71 GSRITVEFSRGAPRGSRD 88
Score = 57 (25.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS +Y R PV + RSP R RSP R RS Y R+RSP
Sbjct: 145 RSGSYSR--SPV--RSRSPR--RRRSPSRSLSRSRS--YSRSRSP 181
Score = 53 (23.7 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 244
R RSP+ Y + RSP R RS V +R RSP
Sbjct: 161 RRRSPSRSLSRSRSYSRSRSPVRRRERS---VEERSRSP 196
Score = 40 (19.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 73 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
+R R R R S+S++ R + + P+R RER ++
Sbjct: 156 SRSPR-RRRSPSRSLSRSRS----YSRSRSPVRRRERSVE 190
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 154 (59.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 38/84 (45%), Positives = 49/84 (58%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+ D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDG 83
+ YD RL VE+ R RG R G
Sbjct: 76 -YDYDGYRLRVEFPRSGRGMGRGG 98
Score = 75 (31.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 32/126 (25%), Positives = 45/126 (35%)
Query: 109 RDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+D+K H G+V + + R+ V+F +E+ T A+ D +K Y
Sbjct: 144 QDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-- 201
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
+ D PR YGR + R SP R P Y SP
Sbjct: 202 -----KVDGPRSPSYGR--SRSRSRSRSRSRSRSNNRSRSYSPRRSR-GSPQY----SPR 249
Query: 228 HGRHRS 233
H R RS
Sbjct: 250 HSRSRS 255
Score = 53 (23.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 221 DQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
D RSP +GR RS R RS R+RS
Sbjct: 204 DGPRSPSYGRSRSRSRSRSRSRSRSNNRSRS 234
Score = 47 (21.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP-VPVYDRRRSPDYGRNRS 251
YGR RS + R RS + RS P Y SP + R+RS
Sbjct: 211 YGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQY----SPRHSRSRS 255
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 166 (63.5 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 115 (45.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 63 (27.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 39/172 (22%), Positives = 61/172 (35%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSK 152
L V N R +D+K G V + + R N ++F + + +AL+ D ++
Sbjct: 112 LIVENLSS-RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTE 170
Query: 153 LVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXXXXXDYG 205
+ R I +E + R R S RR R
Sbjct: 171 INGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRS 230
Query: 206 RGRSPAYDRYNGPVYDQRRSP--DHG---RHRSPVPVYDRRRSPDYGRNRSP 252
+GRS + + + P D G R RS Y++ RS R+RSP
Sbjct: 231 KGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKEYEKSRSRSRSRSRSP 282
Score = 47 (21.6 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 278 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPA-----PPSKARSVSP 318
Score = 41 (19.5 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 77/260 (29%), Positives = 110/260 (42%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R I+VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER----GRHRDGSKSMANQRPTKT----LFVINFDPIRTRE 108
D + +D RL VE A G R R S A++ P++ + V P + +
Sbjct: 66 DG--YDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPPSASWQ 123
Query: 109 RDIKRHFEPYGNVLHVRI---RRNFAFV----QFETQEEATKALESTD-RSKLVDRVISV 160
D+K H G+V + R+ + V ++ + A + L++T+ R+ I V
Sbjct: 124 -DLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRV 182
Query: 161 -EYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDR--YNG 217
EY + S D S R R R R + R Y+
Sbjct: 183 REYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSS 242
Query: 218 PVYDQRRSPDHGRHRSPVPV 237
Q RS R RS PV
Sbjct: 243 VSRSQSRSKSRSRSRSNSPV 262
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 167 (63.8 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 116 (45.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 59 (25.8 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 37/175 (21%), Positives = 65/175 (37%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T + + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +E + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDYGRGRSPAYDRYNGPVYDQRRSP--DHGRHRSPVPVYDRRRSPD-YGRNRS 251
+GRS + + + P D G H + R RS D YG++RS
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHS-----HSRSRSKDKYGKSRS 274
Score = 49 (22.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSHSPLPA-----PPSKARSMSP 317
Score = 41 (19.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 166 (63.5 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 115 (45.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 59 (25.8 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 40/179 (22%), Positives = 66/179 (36%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T F + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +E + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDY--GRGRSPAYDRYNGPVYDQRRSPDHG-RHRS---PVPVYDRRRSPDYGRNRSP 252
GR RS + R + + D G R RS Y++ RS R+RSP
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKAKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRSP 283
Score = 48 (22.0 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G V + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDVKSKSRSRSQSRSHSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 166 (63.5 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 115 (45.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 59 (25.8 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 39/179 (21%), Positives = 66/179 (36%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T F + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +E + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDYGRGRSPAYDRYNGPVYDQRRSP--DHG-RHRS---PVPVYDRRRSPDYGRNRSP 252
+GRS + + + P D G R RS Y++ RS R+RSP
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRSP 283
Score = 45 (20.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 152 (58.6 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E +F KYGRI +++K + FV FE RDA DAI+G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR 79
D + D RL VE A G RG+
Sbjct: 66 DG--YNLDGCRLRVELAHGGRGQ 86
Score = 76 (31.8 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 41/185 (22%), Positives = 67/185 (36%)
Query: 83 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQ 138
GS R ++ ++ P +D+K H G+V + R+ + V +
Sbjct: 110 GSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNY 169
Query: 139 EE---ATKALESTD-RSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXX 194
++ A + L+ T+ R+ I V+ K +S R R SP R R
Sbjct: 170 DDMKYAIRKLDDTEFRNPWARGFIRVK---KYESSRS-RSRSPSRSR-SRSRSRSRSRGR 224
Query: 195 XXXXXXXXDYGRGRSPAYDRYNGP------VYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
R +SP D P + RSP + +SP R +S R
Sbjct: 225 GRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSR 284
Query: 249 NRSPN 253
+RSP+
Sbjct: 285 SRSPS 289
Score = 43 (20.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 73 ARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHFEP 117
+RG RGR S+S++ + P K L + P R+ R I + P
Sbjct: 221 SRG-RGRSHSRSRSLSRSKSPRKDL---SKSPRRSLSRSISKSRSP 262
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/155 (30%), Positives = 81/155 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
I +++AFV E E+A +A+ D ++ R+I+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRIIA 142
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 158 (60.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRD 82
R + VE ARG R R RD
Sbjct: 64 R--VMVEHARGPR-RDRD 78
Score = 112 (44.5 bits), Expect = 0.00059, P = 0.00059
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVMVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD Y GG G
Sbjct: 74 RRDRDS-YGGGGGGGGG 89
Score = 72 (30.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 39/183 (21%), Positives = 61/183 (33%)
Query: 73 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRN 129
+R GR + G R L V N R +D+K G V + + R N
Sbjct: 97 SRSRTGRDKYGPPVRTEYR----LIVENLSS-RCSWQDLKDFMRQAGEVTYADAHKERAN 151
Query: 130 FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXX 189
++F + + +ALE D + + R I + ++D R Y R R
Sbjct: 152 EGVIEFRSYSDMRRALEKLDGTDINGRKIRL---VEDKPRRRRSYSGSRSRSRSRRRSRS 208
Query: 190 XXXXXXXXXXXXXDYGRGRSPAY-DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
R RS + R + +S R +SP R + R
Sbjct: 209 RSRRSSRSRSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRSKSPSSKSRSRNRKSHSR 268
Query: 249 NRS 251
+RS
Sbjct: 269 SRS 271
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 164 (62.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 113 (44.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 59 (25.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 39/179 (21%), Positives = 66/179 (36%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T F + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +E + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDYGRGRSPAYDRYNGPVYDQRRSP--DHG-RHRS---PVPVYDRRRSPDYGRNRSP 252
+GRS + + + P D G R RS Y++ RS R+RSP
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRSP 283
Score = 45 (20.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+P P R+ SP
Sbjct: 279 RSRSPK-ENGKGDIKSKSRSRSQSRSDSPLPA-----PPSKARSVSP 319
Score = 41 (19.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 167 (63.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 116 (45.9 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDDRYDSPRRGGYG 183
+RD R GG G
Sbjct: 74 RRDRDGYSYGSRSGGGG 90
Score = 52 (23.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 40/181 (22%), Positives = 68/181 (37%)
Query: 92 PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T + + + + +R +D+K G V + + R N ++F + + +AL+
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 147 STDRSKLVDRVIS-VEYALKDDSERD-----DRYDSPRRG-GYGRHXXXXXXXXXXXXXX 199
D +++ R I +E + R R S RR R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRS 224
Query: 200 XXXDYGRGRSPAYDR--------YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
+GRS + + + P D R S H R RS Y++ RS R+RS
Sbjct: 225 RSRSRSKGRSRSRSKGRKSRSKSKSKPKSD-RGSHSHSRSRSK-DEYEKSRSRS--RSRS 280
Query: 252 P 252
P
Sbjct: 281 P 281
Score = 51 (23.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RSP + G + + RS R SP+PV P R+ SP
Sbjct: 277 RSRSPK-ENGKGDIKSKSRSRSQSRSNSPLPV-----PPSKARSVSP 317
Score = 41 (19.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y RS + R +R S R RS R RS GR+RS + G
Sbjct: 191 YSGSRSRSRSRRRSRSRSRRSS--RSRSRSISKSRSRSRSRSKGRSRSRSKG 240
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 59/223 (26%), Positives = 95/223 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA---LKDDSERDDRYDSPRR- 179
I +++AFV E E+A +A+ D ++ + + V+ + L+ D+ R
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRHL 166
Query: 180 ---GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
G YGR RSP R PV
Sbjct: 167 LPTSGAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 208
Score = 115 (45.5 bits), Expect = 0.00010, P = 0.00010
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 156 (60.0 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R F YG++ D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 67 (28.6 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 42/196 (21%), Positives = 64/196 (32%)
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
G+ R S +R GR + G R L V N R +D+K G V
Sbjct: 86 GFGGRSNSGYSSRSRSGRDKYGPPVRTEYR----LIVENLSS-RCSWQDLKDFMRQAGEV 140
Query: 122 LHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
+ + R N ++F + + +AL+ D + + R I + ++D R Y + R
Sbjct: 141 TYADAHKERTNEGVIEFRSHSDMRRALDKLDVTDINGRKIRL---VEDKPRRRRSYSASR 197
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R R RS +G Y R H
Sbjct: 198 SRSRSRRRSRSRSRRSSRSQSRSRSRSRSRSKHSRSRSGRKYRSRSRSSRKSHSKSHSKK 257
Query: 239 DRRRS---PDYGRNRS 251
R RS + R+RS
Sbjct: 258 SRSRSRSRTEKSRSRS 273
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 170 (64.9 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 41 (19.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 204 YGRGRSPAYDRYNGPV 219
YGR RSP R GPV
Sbjct: 301 YGRDRSPLR-RATGPV 315
Score = 40 (19.1 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 243 SPDYGRNRSP 252
+P YGR+RSP
Sbjct: 298 TPYYGRDRSP 307
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 46/152 (30%), Positives = 76/152 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I +++AFV E E+A +A+ D ++ D
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQD 138
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 170 (64.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 170 (64.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 170 (64.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
YD+ + G + + S YGR+RSP
Sbjct: 271 YDRHLLQNSGSAATSAAMAAAASSSYYGRDRSP 303
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 42/109 (38%), Positives = 59/109 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWAR----GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109
R +++E AR G RGR R + +++RP N P+RT R
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDR-FSSRRPRNDRR--NAPPVRTENR 109
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 156 RVISVEYA 163
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 42/109 (38%), Positives = 59/109 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWAR----GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109
R +++E AR G RGR R + +++RP N P+RT R
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDR-FSSRRPRNDRR--NAPPVRTENR 109
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 156 RVISVEYA 163
+++E+A
Sbjct: 65 ERVTIEHA 72
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 -GYDRRRL 68
G+ RL
Sbjct: 137 QGWWSTRL 144
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 46/148 (31%), Positives = 77/148 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 142 (55.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G---FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ G FAFV FED RDA DAI G + +
Sbjct: 4 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGL 63
Query: 60 P 60
P
Sbjct: 64 P 64
Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 109 RDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKAL 145
+D+K H G+V + ++++ V++ +E+ AL
Sbjct: 70 QDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYAL 107
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 167 (63.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 44 (20.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 14/48 (29%), Positives = 14/48 (29%)
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
D YD G YGR RSP R GPV
Sbjct: 270 DPYDRHLLPTSGAAAAAAAAAAAAVTAASSSYYGRDRSPLR-RATGPV 316
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 167 (63.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 44 (20.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
DR+ P G YGR RSP R PV
Sbjct: 273 DRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 319
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 170 (64.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 37 (18.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDR--RRSPDYGRNRSP 252
YD+ P+ G + + S YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAANTSSYYGRDRSP 305
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R + VE ARG R R RDG
Sbjct: 64 R--VIVEHARGPR-RDRDG 79
Score = 106 (42.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 14 REKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGP 73
Query: 167 DSERDD-RYDSPRRGG 181
+RD Y S G
Sbjct: 74 RRDRDGYSYGSRMTNG 89
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 170 (64.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 36 (17.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 252
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 170 (64.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 36 (17.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 252
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 170 (64.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 36 (17.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 252
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 53/153 (34%), Positives = 77/153 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG+ R+ ++E+ F YGRI + +K+GF FV FED RDA DAI L+ D
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKEL-CD 64
Query: 65 RRRLSVEWARGERGRHRDGSK-SMANQR-------PTKTLFVINFDPIRTRE--RDIKRH 114
R +++E AR RGR R + S +Q P +T I + + +R +D+K
Sbjct: 65 ER-VTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSSRISWQDLKDV 123
Query: 115 FEPYGNVLHV---RIRRNFAFVQFET--QEEAT 142
G V +V R RN V+F + EE T
Sbjct: 124 MRKAGEVTYVDAHRNNRNEGVVEFASYSDEECT 156
Score = 116 (45.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
R RERD+++ F+ YG + + ++ F FV+FE +A A+ + +L D +++E+A
Sbjct: 14 RARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEHA 72
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 45/149 (30%), Positives = 75/149 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 41/107 (38%), Positives = 58/107 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWARGE-RGRHRDG-SKSMANQRPTKTLFVINFDPIRTRER 109
R +++E AR RGR R S +++RP + P+RT R
Sbjct: 66 R--VTIEHARARSRGRGRGRYSDRFSSRRPRSDRR--SAPPLRTENR 108
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 156 RVISVEYALKDDSER-----DDRYDSPR 178
+++E+A R DR+ S R
Sbjct: 65 ERVTIEHARARSRGRGRGRYSDRFSSRR 92
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 149 (57.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 48/166 (28%), Positives = 80/166 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + ++ ++E LF KYG+I +++K+ FAFV FED RDA DA+ G +
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG- 64
Query: 60 PFGYDRRRLSVEWARGERGRHRD---GSKSMANQR-----PTKT----LFVINFDPIRTR 107
+G+ +L VE+ R + G R PT+ + V P +
Sbjct: 65 -YGFGDCKLRVEYPRSSGSKFSGPAGGGGGGGGPRGRFGPPTRRSEFRVIVTGLPPTGSW 123
Query: 108 ERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSK 152
+ D+K H G+V ++R+ V+F +E+ AL D ++
Sbjct: 124 Q-DLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDSTE 168
Score = 90 (36.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDR 150
++V N P+ +ERDI+ F YG + + ++ N FAFV+FE +A A+ +
Sbjct: 6 IYVGNL-PMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG 64
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 183
D + VEY S ++ P GG G
Sbjct: 65 YGFGDCKLRVEYPRSSGS----KFSGPAGGGGG 93
Score = 59 (25.8 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP 244
R RS + RY P Y R SP R+RSP P + R SP
Sbjct: 193 RSRSRSRGRYTPP-YQSRGSPPP-RYRSP-PRHMTRHSP 228
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 135 (52.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 170 (64.9 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 76/250 (30%), Positives = 107/250 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--G--FAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ G FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RG-----RHRDGSKSMANQRP----TKTLFVINFDPIRT 106
+ YD RL VE+ RG RG R RDG M + P ++ ++ P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASG 126
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYALK 165
+D+K H G+V ++ + V + E K KL D R S E +
Sbjct: 127 SWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIK----KLDDSRFRSHEGEVA 182
Query: 166 DDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRS-PAYDRYNG-PVYDQR 223
R+D D+ R GG G D R RS + R G P Y
Sbjct: 183 YIRVREDSGDNDRGGG-GGGSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPV 241
Query: 224 RSPDHGRHRS 233
R + R RS
Sbjct: 242 RRQSYSRSRS 251
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 120 (47.3 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 41/160 (25%), Positives = 64/160 (40%)
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 148
NQ P K L V N + + + +++ FE YG V I +NFAFV +EA A++
Sbjct: 74 NQGPVK-LHVANVE--KGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGL 130
Query: 149 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYG-RHXXXXXXXXXXXXXXXXXDYGRG 207
D ++ + I V+ + +D Y P G + R+ G
Sbjct: 131 DNTEFQGKRIHVQISKSRPRGEEDDYGHPDAGYWPPRYPGERPEPPGYPRGRYGYPPGPP 190
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYG 247
P Y R +P + R R V Y++ R+ YG
Sbjct: 191 PPPPPPPPRRSPYPDRAAPAYERQRDVVDYYEKYRARPYG 230
Score = 109 (43.4 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+ V N E T EL LF YG + + FAFV+ + +A DAI+GLDN F
Sbjct: 80 LHVANVEKGT-DDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGK 138
Query: 65 RRRLSVEWARGERGRHRD 82
R + + +R RG D
Sbjct: 139 RIHVQISKSR-PRGEEDD 155
Score = 104 (41.7 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + EL+ LFS+YG + + FAFV+ +D + A AI+ L +
Sbjct: 4 IFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHL--YKLH 61
Query: 65 RRRLSVEWARGE 76
++VE +RG+
Sbjct: 62 GTPINVEASRGK 73
Score = 37 (18.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 216 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
NG Y++ R R+P+ R R P Y +P
Sbjct: 298 NGYSYERSRLSPVSMSRAPMYSVPRPRDP-YADRAAP 333
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 134 (52.2 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGGTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
Score = 45 (20.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 20/51 (39%), Positives = 22/51 (43%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
DY R RSP R P +RRS R RS R RS RN P+
Sbjct: 103 DYRR-RSPP-PRRRSP---RRRSFSRSRSRSLSRDRRRERSLSRERNHKPS 148
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 167 (63.8 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 37 (18.1 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
DR+ P G YGR RSP R PV
Sbjct: 273 DRHLLPTSGAAATAAAAAAAAAAVTAASTSY-YGRDRSPLR-RATAPV 318
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 167 (63.8 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T ++++ FE YG V+
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
Score = 37 (18.1 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
DR+ P G YGR RSP R PV
Sbjct: 273 DRHLLPTSGAAATAAAAAAAAAAVTAASTSY-YGRDRSPLR-RATAPV 318
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 169 (64.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 41/94 (43%), Positives = 54/94 (57%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LFSKYG + ++D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ 90
D + +D L VE A G R D S + +
Sbjct: 66 DG--YDFDGHHLRVELAHGGRRSSHDARGSYSGR 97
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 74/240 (30%), Positives = 97/240 (40%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPF-GYDRR-------RLSVEWARGE---RGRH-RDGS 84
G+AFV FED RDA DAI G D F G+ R R S ARG RGR R G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGG 105
Query: 85 KSMANQR-PTKTL---FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFE 136
+R P++ V++ P +D+K H G V ++ R+ V +
Sbjct: 106 DGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYT 165
Query: 137 TQEEATKALESTD-RSKLVDRVISV-EYALKDDSERDDRYDSPRRG-GYGRHXXXXXXXX 193
+ E+ AL+ T+ R+ + V EY DS RD R SP RG Y +
Sbjct: 166 SYEDMKYALDDTEFRNAFSHEYVRVREY----DSRRDSR--SPSRGRSYSKSRSRGRSPS 219
Query: 194 XXXXXXXXXDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RS + + P RRSP RSP R RS R+ SP
Sbjct: 220 RS----------RSRSRSRSKSRSPKAKSLRRSPAKSTSRSP-----RSRSRSKSRSLSP 264
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV FED RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSE 65
Query: 65 RRRLSVEWAR----GERGRHRDGSKSMANQRP 92
R +++E AR G RGR R + +++RP
Sbjct: 66 R--VTIEHARARSRGGRGRGRYSDR-FSSRRP 94
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ +P RE+D++R F+ YG + + ++R F FV+FE +A A+ D +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 156 RVISVEYA 163
+++E+A
Sbjct: 65 ERVTIEHA 72
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 141 (54.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARGE-RGRHRD 82
R + VE ARG RG +RD
Sbjct: 66 R--VVVEPARGTARGSNRD 82
Score = 122 (48.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
P RERD++R F+ YG + I+ + FV+FE +A A+ + +L+ + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 71
Query: 163 A--LKDDSERD---DRYDSPRRGGYGRH 185
A S RD DRY R GG GR+
Sbjct: 72 ARGTARGSNRDRYDDRYGGRRGGGGGRY 99
Score = 75 (31.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 45/178 (25%), Positives = 72/178 (40%)
Query: 75 GERGRHRDGSK-SMANQR---PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---R 125
G GR+ + +K S ++ R P +T + + + + +R +D+K + G V + +
Sbjct: 94 GGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHK 153
Query: 126 IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRH 185
RRN V+F + + A+E D ++L R I L +D R R S GG GR
Sbjct: 154 QRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH----LVED-RRGGR--SGGGGGSGRG 206
Query: 186 XXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS 243
R R ++ R + R GR +S PV R RS
Sbjct: 207 RSRSSSSRSRSRSRRRS---RSRRSSHSRSKSRSRSKSRG---GRSKSKSPVKSRSRS 258
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 171 (65.3 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 43/151 (28%), Positives = 76/151 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ +EL LF KYG + D+ + FV+ E ++ DAI+ L+ + +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNG--YTLN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A+ R A PT +FV N +TR +++ F+ YG V+
Sbjct: 67 EFAIKVEAAKSRR----------APNTPTTKIFVGNLTD-KTRAPEVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV + + A++ + ++VD
Sbjct: 116 DIVRNYGFVHLDCVGDVQDAIKELN-GRVVD 145
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 167 (63.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 74/266 (27%), Positives = 108/266 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++ER F YGRI +D+K GF FV D RDA DA+ LD +
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFV---DPRDADDAVYELDGKELCSE 62
Query: 65 RRRLSVEWARGE-----RGRHRD--GSKSMANQR----PTKT---LFVINFDPIRTRERD 110
R +++E AR RGR+ D S+ + R P +T L V N R +D
Sbjct: 63 R--VTIEHARARSRGRGRGRYSDRFSSRRPRSDRRSAPPLRTENRLIVENLSS-RVSWQD 119
Query: 111 IKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K G V R N V+F + + A+E ++ R I L +
Sbjct: 120 LKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKLSGKEINGRKIK----LIEG 175
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
S+R RY GY R R R +Y R + RS
Sbjct: 176 SKRH-RY------GYLRSRSRSRSRSRSSSRSRSRSRSRSRK-SYSRSRS----RSRSKS 223
Query: 228 HGRHRSPVPVYDRRRSPDYGRNRSPN 253
RSP+P ++R R++SP+
Sbjct: 224 RSVSRSPMPEKSQKRGSS-SRSKSPS 248
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 172 (65.6 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 54/166 (32%), Positives = 83/166 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H TK +FV N + T E D++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLHS-----------TK-VFVGNLSSMCTTE-DLQELFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+ +AFV E +E+A +A+E+ + R +SVE + S++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 170 (64.9 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 47/157 (29%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 147 (56.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++E+ F YGRI +++K+GF FV F+D RDA DA+ L+ +
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCSE 65
Query: 65 RRRLSVEWARGERGR 79
R +++E AR RGR
Sbjct: 66 R--VTIEHARSRRGR 78
Score = 109 (43.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ P RERD+++ F+ YG + + ++ F FV+F+ +A A+ + +L
Sbjct: 6 VFIGRLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64
Query: 156 RVISVEYALKDDSE-----RDDRYDSPRRGGY 182
+++E+A R+ SPR GGY
Sbjct: 65 ERVTIEHARSRRGRGGGPGMGGRF-SPRFGGY 95
Score = 56 (24.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 40/172 (23%), Positives = 57/172 (33%)
Query: 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFA 131
G R GS+ R + V N R +D+K G V V R ++N
Sbjct: 94 GYRQSRSGGSRYGPPVRTEHRIIVENLSS-RISWQDLKDLMRKVGEVTFVDAHRTKKNEG 152
Query: 132 FVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXX 191
V+F + + A+E D + L R + L +D +R+ R R
Sbjct: 153 VVEFASHSDMKNAIEKLDGTDLNGRKLK----LYEDRKRN------RSRSRSRSRSSSRS 202
Query: 192 XXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRS 243
R RS + R RSP RSP P + RS
Sbjct: 203 RSPSRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPS----RSPTPQRKQSRS 250
Score = 50 (22.7 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
R RS + R P + RSP+ G RS R NRSP+
Sbjct: 193 RSRSRSSSRSRSP--SRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPS 238
Score = 48 (22.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DR + RS R RSP R RSP+ G RS
Sbjct: 184 DRKRNRSRSRSRSRSSSRSRSP----SRSRSPERGSKRS 218
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ G D
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELN----GKD 59
Query: 65 R--RRLSVEWARGERGRHRDGS 84
R+ VE ARG R RDGS
Sbjct: 60 LCGERVIVEHARGPR---RDGS 78
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR 71
Query: 165 KDDSERDDRYDSPRRG-GYGR 184
RD Y S R G GY R
Sbjct: 72 --GPRRDGSYGSGRSGYGYRR 90
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 59/186 (31%), Positives = 79/186 (42%)
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 128
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLTGVNVVYDQRTGRSR 59
Query: 129 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GRHXX 187
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 60 GFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 188 XXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDY 246
GR R YDR YD+ D+ R RSP P Y R RS
Sbjct: 114 FLGGGMGCSGGGGGGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSR 173
Query: 247 GRNRSP 252
R+ SP
Sbjct: 174 SRSYSP 179
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 64/199 (32%), Positives = 82/199 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 93 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLT 148
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 149 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYSITK------RA 202
Query: 175 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 233
+P G Y GR Y RG YDRY YD R R RS
Sbjct: 203 HTPTPGIYMGRPTHSGGGGGGGAGRRRDSYYDRGYDRGYDRYEE--YDYRY-----RRRS 255
Query: 234 PVPVYDRRRSPDYGRNRSP 252
P P Y R RS R+ SP
Sbjct: 256 PSPYYSRYRSRSRSRSYSP 274
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 148 (57.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 56/184 (30%), Positives = 76/184 (41%)
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 128
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSR 59
Query: 129 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXX 188
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 60 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 189 XXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
GR R YDR YD+ D+ RSP P Y R RS R
Sbjct: 114 SGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRSPSPYYSRYRSRSRSR 173
Query: 249 NRSP 252
+ SP
Sbjct: 174 SYSP 177
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 162 (62.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 64/201 (31%), Positives = 84/201 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 89 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 144
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 198
Query: 175 DSPRRGGY-GR--HXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRH 231
+P G Y GR H GR R YDR YD+ D+ R
Sbjct: 199 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDY-RR 257
Query: 232 RSPVPVYDRRRSPDYGRNRSP 252
RSP P Y R RS R+ SP
Sbjct: 258 RSPSPYYSRYRSRSRSRSYSP 278
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 147 (56.8 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 51/156 (32%), Positives = 70/156 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN +SELER F YG + V + GFAFV FED RDA DA+R LD
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTL 70
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
R R VE + GE+ G N+RP + P + R +R F +
Sbjct: 71 CGCRVR--VELSNGEKRTRSRGPPPSWNRRPRDD-YRRRSSPPQRRRSPRRRSFSRSRSR 127
Query: 122 LHVRIRRNFAFVQFETQEEATKALE-STDRSKLVDR 156
R RR + E + +++ S RS+ DR
Sbjct: 128 SFSRERRRERSLSRERNHKPSRSFSRSRSRSRSNDR 163
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 164 (62.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 66/253 (26%), Positives = 110/253 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T E+ LFS+YG+I D+ F FV+ + +A +AI+ L + + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--YMLN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++G+ + TK L V N T + +++ FE YG V+
Sbjct: 62 GMAMNVEMSKGKP------------KTSTK-LHVGNISSSCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA---LKDD---SERDDRYDSPR 178
I +++AFV E E+A +A+ D + +++SV+ + L+ ER Y +
Sbjct: 108 DIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQ 167
Query: 179 RGGYGR------HXXXXXXXXXXXXXXXXXDYGRGRSPAYDR-YNG-PVYDQRRSPDHGR 230
G + + + D G R + R ++G P Y +P HG
Sbjct: 168 EGHWSKECPLDQNGSYREGPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSHGF 227
Query: 231 HRSP---VPVYDR 240
R VP Y R
Sbjct: 228 TRGAGYAVPGYGR 240
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 57/185 (30%), Positives = 77/185 (41%)
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 128
R RH GS+ AN P L V + T ERD++ F YG + V + R
Sbjct: 4 RRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLSGVNVVYDQRTGRSR 59
Query: 129 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXX 188
FAFV FE +++ +A+E + +L R I V+Y++ R +P G Y
Sbjct: 60 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RAHTPTPGIYMGRPTH 113
Query: 189 XXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRSPVPVYDRRRSPDYG 247
GR R YDR YD+ D+ R RSP P Y R RS
Sbjct: 114 SGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRS 173
Query: 248 RNRSP 252
R+ SP
Sbjct: 174 RSYSP 178
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 162 (62.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 52/183 (28%), Positives = 84/183 (45%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T + EL LF KYG + D+ + FV+ +++ A A+ L +
Sbjct: 4 IFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHK--HEVN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R++VE+A + R+ +K ++V N P IK F+P+G V+
Sbjct: 62 GSRITVEYATT---KVRNATK----------IYVGNV-PEGVAAAKIKELFQPFGKVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE--RDDRYDSPRRGGY 182
I +N+AFV + + EA A+ + SK+ + I V + + S R + Y P Y
Sbjct: 108 DIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSNPSRNGRGEDYYPPPPPHY 167
Query: 183 GRH 185
H
Sbjct: 168 PPH 170
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 157 (60.3 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 52/179 (29%), Positives = 78/179 (43%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATK 143
P +LFV N +R D++R F YG ++ V I R FA++QFE +A
Sbjct: 8 PNSSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 144 ALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXD 203
AL + DR + R I +++A + D + + + R R D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFA-QGDRKTPGQMKNKERSS-PRSSRYEDSDRRRRSRSRSYD 124
Query: 204 YGRGRSPAYDRY----NGPVYDQ-----RRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
R RSP+YDR + P + RRS +H RHR + R R+ R+RSP+
Sbjct: 125 RRRSRSPSYDRRRRRSDSPRESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPS 183
Score = 114 (45.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 37/117 (31%), Positives = 57/117 (48%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FV N E+R +L R F +YG I V D S GFA++ FED RDA DA+ L
Sbjct: 12 LFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNL 71
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
D R++ +++A+G+R + K+ P + + + R+R R R
Sbjct: 72 DRK--WVCGRQIEIQFAQGDR-KTPGQMKNKERSSPRSSRYEDSDRRRRSRSRSYDR 125
Score = 52 (23.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 16/44 (36%), Positives = 18/44 (40%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RS +DR+ G D RS RS P R R GR S
Sbjct: 154 RSREHDRHRGSTRDHHRSRTDAASRSRSPSRSRARG---GRRES 194
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 160 (61.4 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH------ 57
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+L E ++ KS A+ TK L V N P T +++ FE YG V+
Sbjct: 58 -HKLHGVCINVEASKN----KSKAS---TK-LHVGNISPTCTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E E+A +A+ D ++ + + V+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQ 144
Score = 118 (46.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R R+ + +R
Sbjct: 137 QGKRMRVQLSTSR 149
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 121 (47.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
MSR ++VGN + + ELE F +G + V + G+AF+ FED RDA DAIR LD
Sbjct: 1 MSR-VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALD 59
Query: 58 NIPFGYDRRRLSVEWARGERG 78
G + R+ RGERG
Sbjct: 60 ----GKNGWRVEQSHNRGERG 76
Score = 69 (29.3 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 24/49 (48%), Positives = 27/49 (55%)
Query: 205 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
GR RS + R P Y RRSP +GR RS P R RSP R RSP+
Sbjct: 121 GRRRSKSRSR-TPPRY--RRSPSYGR-RSYSP---RARSPPPPRRRSPS 162
Score = 64 (27.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 208 RSPAYDRYNGPVYDQR-RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RSP+Y R + Y R RSP R RSP P R RS Y R+ P
Sbjct: 137 RSPSYGRRS---YSPRARSPPPPRRRSPSPPPARGRS--YSRSPPP 177
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 157 (60.3 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 63/199 (31%), Positives = 83/199 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 175 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 233
+P G Y GR GR R YDR YD+ D+ R RS
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDY-RRRS 257
Query: 234 PVPVYDRRRSPDYGRNRSP 252
P P Y R RS R+ SP
Sbjct: 258 PSPYYSRYRSRSRSRSYSP 276
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 127 (49.8 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
M ++VG + ELE +F ++GRI +V + GFAFV ++D RDA DA+R LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 58 NIPFGYDRRR--LSVEWARGERGR 79
R R LS RG GR
Sbjct: 61 GSRICGVRARVELSTGQRRGGGGR 84
Score = 46 (21.3 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
RG+RGR R S+ R + D R R R+ R E
Sbjct: 102 RGDRGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERE 144
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 127 (49.8 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
M ++VG + ELE +F ++GRI +V + GFAFV ++D RDA DA+R LD
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALD 60
Query: 58 NIPFGYDRRR--LSVEWARGERGR 79
R R LS RG GR
Sbjct: 61 GSRICGVRARVELSTGQRRGGGGR 84
Score = 46 (21.3 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
RG+RGR R S+ R + D R R R+ R E
Sbjct: 102 RGDRGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERE 144
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 156 (60.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 61/199 (30%), Positives = 81/199 (40%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 175 DSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHRS 233
+P G Y GR R YDR YD+ D+ R RS
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRS 260
Query: 234 PVPVYDRRRSPDYGRNRSP 252
P P Y R RS R+ SP
Sbjct: 261 PSPYYSRYRSRSRSRSYSP 279
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 114 (45.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADA 52
+S +FV N YET++SELE +FS +G+IE + + GFA+V + D A +A
Sbjct: 293 ISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEA 352
Query: 53 IRGLD 57
R LD
Sbjct: 353 YRNLD 357
Score = 98 (39.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALES 147
+R + V NF T+ D+++ FEP+G + + + + A V F +EA KA +S
Sbjct: 474 ERGNLAILVKNFS-YGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPDEAQKAFKS 532
Query: 148 TDRSKLVDRVISVEYALKDDSERD 171
KL D ++ +E A KD E D
Sbjct: 533 LAYRKLGDSILFLEKAPKDLFEAD 556
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 156 (60.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 77/269 (28%), Positives = 111/269 (41%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59
S +++GN + ++E FS +G +I + + +GF F+ +ED DA D +
Sbjct: 6 STRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNGFGFIEYEDAMDARDIVPAFHGS 65
Query: 60 PFGYDRRRLSVEWARGERGRHR-DGSKSMAN-QRPTKTLF--VINFDPIRTRERDIKRHF 115
F +R L+V++ARG R + N RP +T+F +I+ P T +D+K
Sbjct: 66 DFKGER--LTVQFARGPRRKENFPVPTDRPNLPRPRRTIFRMIISGLP-ETSWQDLKDFA 122
Query: 116 EPYG-NVLHVRIRRN--FAFVQFETQEEATKALESTD-RSKLVDRVISV-EYALKDDSER 170
G +V++ R V+FET + A+E D R RV V + DD
Sbjct: 123 RQSGLDVVYSETGREPGRGIVEFETANDLKTAVEKLDGREFKGTRVTCVPDIQPYDDRPY 182
Query: 171 DDRYDS--PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDR--YNGPVYDQRRSP 226
D Y S PRRG Y Y R RSP R Y G Y +R P
Sbjct: 183 RDPYRSRSPRRG-YPPMDEYDRRYSVPRGYSPRSHY-RERSPIPMRRDYYGDGYGRRTPP 240
Query: 227 DHGRHRSPVPVYDRRRSPD-YGRNRSPNF 254
P P RR D YG P +
Sbjct: 241 RPRMEDYPPP---RRPYEDPYGPPPPPRY 266
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 155 (59.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 63/200 (31%), Positives = 83/200 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 175 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHR 232
+P G Y GR GR R YDR YD+ D+ R R
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRR 258
Query: 233 SPVPVYDRRRSPDYGRNRSP 252
SP P Y R RS R+ SP
Sbjct: 259 SPSPYYSRYRSRSRSRSYSP 278
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 155 (59.6 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 63/200 (31%), Positives = 83/200 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 91 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 146
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 147 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 200
Query: 175 DSPRRGGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-RHR 232
+P G Y GR GR R YDR YD+ D+ R R
Sbjct: 201 HTPTPGIYMGRPTHSGGGGGGGGGGGGGG--GRRRDSYYDRGYDRGYDRYEDYDYRYRRR 258
Query: 233 SPVPVYDRRRSPDYGRNRSP 252
SP P Y R RS R+ SP
Sbjct: 259 SPSPYYSRYRSRSRSRSYSP 278
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 154 (59.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 64/202 (31%), Positives = 84/202 (41%)
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y RRR R RH GS+ AN P L V + T ERD++ F YG +
Sbjct: 89 YRRRRSRSHSPMSNRRRHT-GSR--ANPDPNTCLGVFGLS-LYTTERDLREVFSRYGPLS 144
Query: 123 HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
V + R FAFV FE +++ +A+E + +L R I V+Y++ R
Sbjct: 145 GVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK------RA 198
Query: 175 DSPRRGGY-GR--HXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHG-R 230
+P G Y GR H GR R YDR YD+ D+ R
Sbjct: 199 HTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGG-GRRRDSYYDRGYDRGYDRYEDYDYRYR 257
Query: 231 HRSPVPVYDRRRSPDYGRNRSP 252
RSP P Y R RS R+ SP
Sbjct: 258 RRSPSPYYSRYRSRSRSRSYSP 279
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 155 (59.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 71/253 (28%), Positives = 101/253 (39%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK--SG--FAFVYFEDDRDAADAIRGLDNIP 60
+++G ET Q L FSKYG I R D+K +G +AFV +++ RDA DA++ L+
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMA-NQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
++SVEWA+G G++ D +K A Q N R+R+R + R
Sbjct: 63 LL--NSKISVEWAKG--GKNADNNKCFACGQEGHWIKSCPNGGKKRSRDRSLSRS----- 113
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
H R RR+ + S DRS+ R S + + RD D R
Sbjct: 114 ---HSRDRRSRRYRSPSWDRRDRSRDRSRDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRD 170
Query: 180 GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY-NGPVYDQRRSPDHGRHRSPVPVY 238
G R R R + DR +G + S D R+ S
Sbjct: 171 GRRERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSR 230
Query: 239 DRRRSPDYGRNRS 251
DR RS G S
Sbjct: 231 DRSRSNGGGSRYS 243
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 152 (58.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 46/132 (34%), Positives = 62/132 (46%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD-----NI 59
IF+G R+ ++ER F YGRI +D+K GF FV F+D RDA DA+ LD N
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNE 65
Query: 60 PFGYDRRRLSVEWARGERG------RHRDGSK-SMANQRPTKT---LFVINFDPIRTRER 109
+ R+ + RG G R+ GS+ S N P +T L V N R +
Sbjct: 66 RVTIEHARVRLRGGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLIVENLSS-RVSWQ 124
Query: 110 DIKRHFEPYGNV 121
D+K G V
Sbjct: 125 DLKDFMRQAGEV 136
Score = 113 (44.8 bits), Expect = 0.00026, P = 0.00026
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ +P RE+D++R F+ YG + + ++R F FV+F+ +A A+ D +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 156 RVISVEYA 163
+++E+A
Sbjct: 65 ERVTIEHA 72
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 152 (58.6 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 61/191 (31%), Positives = 82/191 (42%)
Query: 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------R 127
++ H G + AN P L V + T ERD++ F YG++ V +
Sbjct: 118 KKDSHNQGD-ARANPDPNTCLGVFGLS-LYTTERDLREVFSRYGSLAGVNVVYDQRTGRS 175
Query: 128 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY-GR-- 184
R FAFV FE ++A +A+E + +L R I V+Y++ R +P G Y GR
Sbjct: 176 RGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSITK------RPHTPTPGIYMGRPT 229
Query: 185 HXXXXXXXXXXXXXXXXXD--YGRGRSPAYDR-YNGPVYDQRRSPDHGRHRSPVPVYDRR 241
H D Y RG YDR Y+ YD R S R RSP P Y R
Sbjct: 230 HNGGGGGGGGSSSGGRRRDSYYDRGYDRGYDRGYDE--YDYRYS----RRRSPSPYYSRY 283
Query: 242 RSPDYGRNRSP 252
RS R+ SP
Sbjct: 284 RSRSRSRSYSP 294
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 156 (60.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 69/257 (26%), Positives = 109/257 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDN 58
I+VGN + E+ LF KYGRI+ +D+K S +AFV++ D +DA AI D
Sbjct: 14 IYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLKDADYAIERRDG 73
Query: 59 IPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
F D RL VE + R G++R + T+ ++ P R + +K
Sbjct: 74 YKF--DGFRLRVEHSGENRSFGKYRKKDDGVGPPIRTENRVIVTNLPDNCRWQHLKDIMR 131
Query: 117 PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYALKDDSERDDRY 174
G+V + I R V+F + ++ A+E D + K+ D V +++ ++ D +R Y
Sbjct: 132 QCGDVGYANIERGKGIVEFVSYDDMLYAIEKFDGAEFKVYDDVTNIK--VRRD-KRGSSY 188
Query: 175 DSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 234
R Y D R RS Y + + +R+ + H
Sbjct: 189 MKRYRNDYSPKYKKRRRYSNESGLS---DRDRSRSRRYSKSSNS--SNKRNNKYESHSQS 243
Query: 235 VPVYDRRRSPDYGRNRS 251
+ D R S Y RNRS
Sbjct: 244 LS--DNRNS--Y-RNRS 255
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 156 (60.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 69/257 (26%), Positives = 109/257 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDN 58
I+VGN + E+ LF KYGRI+ +D+K S +AFV++ D +DA AI D
Sbjct: 14 IYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLKDADYAIERRDG 73
Query: 59 IPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
F D RL VE + R G++R + T+ ++ P R + +K
Sbjct: 74 YKF--DGFRLRVEHSGENRSFGKYRKKDDGVGPPIRTENRVIVTNLPDNCRWQHLKDIMR 131
Query: 117 PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYALKDDSERDDRY 174
G+V + I R V+F + ++ A+E D + K+ D V +++ ++ D +R Y
Sbjct: 132 QCGDVGYANIERGKGIVEFVSYDDMLYAIEKFDGAEFKVYDDVTNIK--VRRD-KRGSSY 188
Query: 175 DSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 234
R Y D R RS Y + + +R+ + H
Sbjct: 189 MKRYRNDYSPKYKKRRRYSNESGLS---DRDRSRSRRYSKSSNS--SNKRNNKYESHSQS 243
Query: 235 VPVYDRRRSPDYGRNRS 251
+ D R S Y RNRS
Sbjct: 244 LS--DNRNS--Y-RNRS 255
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 120 (47.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 33/86 (38%), Positives = 47/86 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VG+ + ELER FS YG + V + GFAFV +ED RDA DA++G+D +
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVL 75
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKS 86
G R+ VE + G + R G S
Sbjct: 76 CG---ARVRVELSNGMSRKSRYGRPS 98
Score = 69 (29.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 206 RGRSPAYDR-YNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R RS + +R Y P Y +RRS RS P R RSP GR+RSP
Sbjct: 148 RSRSRSNERRYRSPSYSKRRS------RSGSPGRSRSRSPG-GRSRSP 188
Score = 59 (25.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 36/146 (24%), Positives = 52/146 (35%)
Query: 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
R +R F+P ++A+ + + ++ S RS+ R Y + S
Sbjct: 96 RPSRRQFDPNDRCYQCGETGHYAYDCYRFSKRRSRRSRSGSRSRSRSR--GRRYRSRSRS 153
Query: 169 ERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQR-RSPD 227
+ RY SP Y + GR RSP R PV R R+P
Sbjct: 154 N-ERRYRSP---SYSKRRSRSGSPGRSRSRSPG---GRSRSPVR-RSKSPVRRSRSRTPL 205
Query: 228 H--GRHRSPVPVYDRRRSPDYGRNRS 251
H R RS R+R R+RS
Sbjct: 206 HRDSRSRSRSRSGSRQRDRSVSRSRS 231
Score = 38 (18.4 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 26/110 (23%), Positives = 41/110 (37%)
Query: 73 ARGERGRHRDGSKSMANQRPTKTLFVINF-DPIRTRERDIK-RHFEPYGNVLH-VRIRRN 129
+RG R R R S + P+ + P R+R R R P VR R+
Sbjct: 142 SRGRRYRSRSRSNERRYRSPSYSKRRSRSGSPGRSRSRSPGGRSRSPVRRSKSPVRRSRS 201
Query: 130 FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+ +++ + S R + V R S ++ + R SPRR
Sbjct: 202 RTPLHRDSRSRSRSRSGSRQRDRSVSRSRSRSRSISHKKDSHSRSASPRR 251
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 34/82 (41%), Positives = 42/82 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + E+E FSKYG + V + GFAFV FED RDA DA RGLD
Sbjct: 13 VYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRC 72
Query: 62 GYDRRRLSVEWARGERGRHRDG 83
R R+ + R GR G
Sbjct: 73 CGTRIRVEMSSGRSREGRGGGG 94
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 40/92 (43%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDAADA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRP 92
R R VE + GE R R+R G +RP
Sbjct: 72 CGCRVR--VELSNGEKRSRNR-GPPPSWGRRP 100
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 150 (57.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 42/157 (26%), Positives = 79/157 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ TK L V N P T + +++ FE YG +L
Sbjct: 62 GVNINVEASK---------NKSKAS---TK-LHVGNISPTCTNQ-ELRAKFEAYGGLLRC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+++++ F+ E ++ A + D ++ + + V+
Sbjct: 108 FLKKDYIFIHLEREQPACLRVPGLDGTQAQGKRMHVQ 144
Score = 36 (17.7 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 220 YDQRRSPDHGRHRSPVPVYDRRRSPD--YGRNRSP 252
YD+ P+ G + + + YGR+RSP
Sbjct: 271 YDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSP 305
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 134 (52.2 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 45/117 (38%), Positives = 55/117 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN ++ELER F YG + V + GFAFV FED RDA DA+R LD
Sbjct: 16 VYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTL 75
Query: 62 GYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
R R VE + GE R R R G ++RP D R R RH P
Sbjct: 76 CGCRVR--VEMSNGEKRSRFR-GPPPSWSRRPRDDYR--RGDDYRRRSSPPARHRSP 127
Score = 79 (32.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 110 DIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
+++R F YG + V + RN FAFV+FE +AT A+ D L + VE +
Sbjct: 29 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVEMS--- 85
Query: 167 DSERDDRYDSP 177
+ E+ R+ P
Sbjct: 86 NGEKRSRFRGP 96
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
R P D G Y +R SP RHRSP + R RS R R
Sbjct: 102 RRPRDDYRRGDDYRRRSSPP-ARHRSPRRSFSRSRSRSLSRER 143
Score = 61 (26.5 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSP--DYGRNRS 251
RG P++ R P D RR D+ R SP P R RSP + R+RS
Sbjct: 94 RGPPPSWSRR--PRDDYRRGDDYRRRSSP-PA--RHRSPRRSFSRSRS 136
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 105 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 155
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 216 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 253
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 140 (54.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 58/170 (34%), Positives = 76/170 (44%)
Query: 105 RTRERDIKRHFEPYGNV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVD- 155
+T D++R FE YG++ +H+ R + F FV+F + +A AL+ TD KLVD
Sbjct: 29 QTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVDG 87
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
R + V A K D D+R R GG GR Y R RSP R
Sbjct: 88 RELRVTLA-KYDRPSDER--GGRGGGGGRRRSRSPRRRSRSPR-----YSRSRSPRRSRS 139
Query: 216 ---NGPVYDQRRSPDH-----GRHRSPVPVYD----RRRSPDYGRNRSPN 253
+ P D+R SPD R RSP P D RRS +RSP+
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPS 189
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 145 (56.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 48/162 (29%), Positives = 69/162 (42%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR-GGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 212
+ V+ Y D+ R PRR GGYGR R RS +
Sbjct: 84 ELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSR 143
Query: 213 DRYN---GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RY+ Y + RS R ++ P + +SP R+RS
Sbjct: 144 SRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRSRS 185
Score = 119 (46.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 ALL--DGRELRVQMAR--YGRPPDAHYSRRGAPPRR 109
>UNIPROTKB|I3LIU9 [details] [associations]
symbol:LOC100621482 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
Length = 148
Score = 112 (44.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VGN + T + ++ LFSK G I+++ M GF FV + DA +A+R ++ D
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMACGFCFVEYYSRADAENAMRYINGTRL--D 99
Query: 65 RRRLSVEWARG-----ERGRHRDGSK 85
R + +W G + GR R G +
Sbjct: 100 DRIIRTDWDAGFKEGRQYGRGRSGGQ 125
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 204 YGRGRSPAYDRYNGPVYDQ-RRSPDHGR 230
YGRGRS G V D+ R+ D GR
Sbjct: 117 YGRGRS------GGQVRDEYRQDYDAGR 138
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 151 (58.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 67/259 (25%), Positives = 106/259 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG + + ++ F YG+I + +GF FV ED RDA D + F
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMGS 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQ--RPTKT---LFVINF-DPIRTRE-RDIKRHF-E 116
R + VE ARGER R + +S A++ RP +T L V N + + ++ +D+ R E
Sbjct: 66 R--IVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGE 123
Query: 117 PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDS 176
P H R V+F T+E+ AL S + + + +++ D+ + +
Sbjct: 124 PTFTDAH-RENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRE--DPDAANEPLPEV 180
Query: 177 PRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHR-SPV 235
P R DY RG D Y D+RR G +R +
Sbjct: 181 PSR---------FRSRSPPARRRYRDDYRRGGDYRRDAYRPGRDDERRYAPRGEYRRNNR 231
Query: 236 PVYDRRRSPDYGRNRSPNF 254
Y R +Y RN ++
Sbjct: 232 DEYRRGGRDEYRRNSRSDY 250
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 145 (56.1 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 73/238 (30%), Positives = 98/238 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 73 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 118
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 119 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSVSLRRSRSASLR 177
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R G R RS + + P + RSP HRS P
Sbjct: 178 RSRSGSIIGSRYFQSRSRSRSRSRSISRPRS-SRSKSRSPSPKRSRSPSGSPHRSASP 234
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 144 (55.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 43/157 (27%), Positives = 81/157 (51%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + +L LFS++G ++ D+ + FV+ + ++A AIR L + +
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHH--YELK 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE ++G + R GS TK L V N T + +++ FE YG V+
Sbjct: 62 GQAINVELSKG---KPR-GS--------TK-LHVSNISSGCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +++AFV E ++A +A+ + + ++I V+
Sbjct: 108 DIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQ 144
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 208 RSPAYDRYNGPVYDQ--RRSPDHGRHRSPVPVYDRRRSPDY 246
R P+Y Y ++ R P R PV DR S DY
Sbjct: 228 RRPSYGEYGAEPRERYLTRVPTGYPERPPVYERDRFGSIDY 268
Score = 37 (18.1 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 218 PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
P Y + + R+ + VP R P Y R+R
Sbjct: 230 PSYGEYGAEPRERYLTRVPTGYPERPPVYERDR 262
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 120 (47.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 36/90 (40%), Positives = 48/90 (53%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
M+R ++VGN + E+E F +G + V + GFAF+ F+D RDA DAIR LD
Sbjct: 1 MAR-VYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLD 59
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSM 87
G+ R LS + G RGR R G M
Sbjct: 60 G-KNGW-RVELSTKAGSG-RGRDRSGGSDM 86
Score = 56 (24.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 206 RGRSPAYDRYNGPVYDQR---RSPDHGRH-RSPVPVYDRR--RSPDYGRNRS 251
R RSP Y R P Y + RSP + RSP P R RSP R RS
Sbjct: 131 RSRSPRYRR--SPSYGRSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRERS 180
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 118 (46.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + LE +FSKYG+I+ V D ++ GF FV FE+ DA DA+ G+
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 57 DNIPFGYDRRRLSVEWA----RGERGRHRDGS 84
+ D R++ V+ A RG +R GS
Sbjct: 68 NGKTV--DGRQIRVDQAGKSSNDRRGGYRGGS 97
Score = 40 (19.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 173 RYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
R+D+ GGYG GR +YD Y
Sbjct: 121 RFDNRSGGGYGGWIPDYYSSGRESSYGDRSAGGRSYRDSYDSY 163
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 108 (43.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 85 KSMANQ--RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQF 135
KS Q +P+ + + N P + ++I++ F YG + VRI R F FV+F
Sbjct: 784 KSNGGQPNKPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEF 842
Query: 136 ETQEEATKALESTDRSKLVDRVISVEYALKD 166
T+EEA A+E+ S R + ++YA +D
Sbjct: 843 LTEEEAKNAMEALGNSHFYGRHLVLQYAEQD 873
Score = 94 (38.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS--GFAFVYFEDDRDAADAIRGL 56
IFV N Y T++ +LE++FSK+G+I + D K G AF+ + +A A+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 57 DNIPF 61
D F
Sbjct: 423 DGKVF 427
Score = 75 (31.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG-Y 63
+ V N ++T++ EL LFSK+G + RV + E +A G N+ + +
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPN-EAKVGFKNLAYSKF 613
Query: 64 DRRRLSVEWA 73
L +EWA
Sbjct: 614 HHVPLYLEWA 623
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 33/78 (42%), Positives = 41/78 (52%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 62 GYDRRRLSVEWARGERGR 79
R R+ + R R
Sbjct: 73 CGSRVRVELSTGMPRRSR 90
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 73/238 (30%), Positives = 98/238 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 101
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 102 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 147
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 148 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSVSLRRSRSASLR 206
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R G R RS + + P + RSP HRS P
Sbjct: 207 RSRSGSIIGSRYFQSRSRSRSRSRSISRPRS-SRSKSRSPSPKRSRSPSGSPHRSASP 263
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 150 (57.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 51/153 (33%), Positives = 76/153 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 183
++L + V A D E+ RY +GG G
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 145 (56.1 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 49/176 (27%), Positives = 77/176 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK---------SGFAFVYFEDDRDAADAIRG 55
IFV N ++ L FS+YG + VD K GF F+YFE A A
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNV--VDAKVARDARGLSKGFGFIYFETPEAAQKACEE 132
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+N F + RR + + +RD + + + PT +L++ N P + + + F
Sbjct: 133 ANNT-FWHGRRINVAPRIKASKPGNRD-AMNQEERTPTSSLYIGNI-PYESTDAALNNLF 189
Query: 116 EPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ + VRI R FA F+ E ATKA+E +L+ R + V+Y+
Sbjct: 190 QDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYS 245
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 109 (43.4 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 33/86 (38%), Positives = 44/86 (51%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
MSR ++VGN + + ELE F +G I V + G+AF+ FED RDA DAIR +D
Sbjct: 1 MSR-VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVD 59
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDG 83
G+ + G RG R G
Sbjct: 60 G-KNGWRVEQSHNRGGGGGRGGGRGG 84
Score = 77 (32.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTD 149
++V N DP R ER+++ F +G + V + R +AF+ FE +A A+ D
Sbjct: 4 VYVGNLDP-RVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVD 59
Score = 67 (28.6 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 205 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
GR RS + R + P Y R+SP +G RS P R RSP R RSP+
Sbjct: 119 GRRRSRSRSR-SPPRY--RKSPTYGGRRSYSP---RARSPPPPRRRSPS 161
Score = 53 (23.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 214 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
R G +RRS R RSP P Y R+SP YG RS
Sbjct: 112 RSRGGSGGRRRS--RSRSRSP-PRY--RKSPTYGGRRS 144
Score = 48 (22.0 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 26/84 (30%), Positives = 29/84 (34%)
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD-HGRH--RSPV 235
RGG G YG GR R P +RRSP GR+ RSP
Sbjct: 114 RGGSGGRRRSRSRSRSPPRYRKSPTYG-GRRSYSPRARSPPPPRRRSPSPRGRNYSRSPP 172
Query: 236 PVYDRRRSP--------DYGRNRS 251
P R P D R+RS
Sbjct: 173 PYRARDEVPYANGNGLKDVRRSRS 196
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 120 (47.3 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 37/94 (39%), Positives = 44/94 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
D R L V+ AR GR D S P
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPP 107
Score = 106 (42.4 bits), Expect = 0.00080, P = 0.00080
Identities = 43/159 (27%), Positives = 61/159 (38%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD 213
+ V+ Y DS R PR R Y R +S +
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRSPR--RRRRSRSRSRSRSRSRSRSRYSRSKSRSRT 141
Query: 214 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R + RS + +S R RS R+RSP
Sbjct: 142 RSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 180
Score = 54 (24.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 170 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 197
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRTRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 121 (47.7 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 54 (24.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP PV +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPV-SKRESKSRSRSKSP 209
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 130 (50.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ I++G + ++E F YG+I V +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 61 FGYDRRRLSVEWARG---ERGRHRDGSKSMA 88
G +R L RG +RG G + A
Sbjct: 61 LGGERVILDYSKPRGGGGDRGGFGGGGRGGA 91
Score = 50 (22.7 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
R RS + DR RS R RSP P RR S R+RS
Sbjct: 215 RSRSRSRDRRRSRSRSSSRSKS--RSRSP-PKRSRRESKSKSRSRS 257
Score = 41 (19.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RS + R RS DRRRS +RS
Sbjct: 207 RSRSNSRSRSRSRSRDRRRSRSRSSSRS 234
Score = 41 (19.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
RS + R + P +R S R RS R RS D ++RSP+
Sbjct: 233 RSKSRSR-SPPKRSRRESKSKSRSRS------RSRSADNRKSRSPS 271
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 130 (50.8 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ I++G + ++E F YG+I V +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 61 FGYDRRRLSVEWARG---ERGRHRDGSKSMA 88
G +R L RG +RG G + A
Sbjct: 61 LGGERVILDYSKPRGGGGDRGGFGGGGRGGA 91
Score = 50 (22.7 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
R RS + DR RS R RSP P RR S R+RS
Sbjct: 215 RSRSRSRDRRRSRSRSSSRSKS--RSRSP-PKRSRRESKSKSRSRS 257
Score = 41 (19.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
RS + R RS DRRRS +RS
Sbjct: 207 RSRSNSRSRSRSRSRDRRRSRSRSSSRS 234
Score = 41 (19.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN 253
RS + R + P +R S R RS R RS D ++RSP+
Sbjct: 233 RSKSRSR-SPPKRSRRESKSKSRSRS------RSRSADNRKSRSPS 271
>DICTYBASE|DDB_G0284245 [details] [associations]
symbol:DDB_G0284245 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0284245 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 EMBL:AAFI02000064 ProtClustDB:CLSZ2846728
RefSeq:XP_638672.1 ProteinModelPortal:Q54PX3 PRIDE:Q54PX3
EnsemblProtists:DDB0233309 GeneID:8624501 KEGG:ddi:DDB_G0284245
eggNOG:KOG0106 InParanoid:Q54PX3 OMA:DDAINSE Uniprot:Q54PX3
Length = 365
Score = 121 (47.7 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS+ I++G ++ R+ +L FSK+G+I+R++++ GF F+ + D A DAI
Sbjct: 1 MSK-IYIGRLNHDAREDDLYGRFSKFGKIDRLELRKGFCFIEYFDKASADDAINSEHKQN 59
Query: 61 F-GYDRRRLSVEWARGERGRHRDGSKS 86
F G R + VE + +G R S S
Sbjct: 60 FLG---RNIIVELSNSSKGIKRPDSSS 83
Score = 63 (27.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 26/89 (29%), Positives = 30/89 (33%)
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSP 226
D RDDR S +R R D R RS DR D+ RS
Sbjct: 129 DRRRDDRRRSDKRRE--RDRSRSRSRSRDNRRRDDRDRSRDRSRDRDRSRDRSRDRDRSR 186
Query: 227 DHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
D R R R R D +R+ N G
Sbjct: 187 DRDRSRDRSRDRSRERERDRSNSRNNNNG 215
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 145 (56.1 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY RGG
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAARGG 334
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 147 (56.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGGYG 183
++L + V A D E+ RY +GG G
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGG 336
Score = 37 (18.1 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRTPGP 395
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 148 (57.2 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 50/194 (25%), Positives = 89/194 (45%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLD 57
S+ + V N + + L+ +F K I R+ +G +AFV FE+ D+ +A+ +
Sbjct: 467 SKVLVVNNLAFSASEDSLQSVFEKAVSI-RIPQNNGRPKGYAFVEFENVEDSKEALENCN 525
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
N + R + +E+++ +R R G N PTKTLFV T ++ +K F+
Sbjct: 526 NTDI--EGRSIRLEYSQNDRER---GGGGRGNSGPTKTLFVKGLSD-DTTDQTLKDSFD- 578
Query: 118 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169
+ RI + F FV F+ +++ A E+ D ++ ++++YA K E
Sbjct: 579 --GAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYA-KPKGE 635
Query: 170 RDDRYDSPRRGGYG 183
RGG+G
Sbjct: 636 GGRGGFGGGRGGFG 649
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 46/184 (25%), Positives = 86/184 (46%)
Query: 5 IFVGNF----EYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGL 56
+F+GN +++ +S + + FSK G +E D++ G F +V F + + A+
Sbjct: 292 LFLGNLNNNKDFDELKSAISKFFSKEG-LEIQDVRLGGTKKFGYVDFASEEELQKALE-- 348
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ ++L + + ++ R ++ S+ +R +TLFV N P + D++ F+
Sbjct: 349 ------LNGKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNL-PYSITQDDLREIFD 401
Query: 117 -------PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169
P GN R A+++F+T+ A KALE S + R I V++ D S
Sbjct: 402 QAVDIRVPMGNT---GTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFT-GDKSR 457
Query: 170 RDDR 173
+ R
Sbjct: 458 QGGR 461
Score = 114 (45.2 bits), Expect = 0.00085, P = 0.00085
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
+R +FV N Y Q +L +F + I RV M + G A++ F+ + A A+
Sbjct: 379 ARTLFVKNLPYSITQDDLREIFDQAVDI-RVPMGNTGTSRGIAYIEFKTEAIAEKALEEA 437
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
R + V++ G++ R G + + +K L V N E ++ FE
Sbjct: 438 QGSDV--QGRSIIVDFT-GDKSRQ--GGRGAPSA--SKVLVVNNL-AFSASEDSLQSVFE 489
Query: 117 PYGNVLHVRIRRN------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+ +RI +N +AFV+FE E++ +ALE+ + + + R I +EY+ ++D ER
Sbjct: 490 ---KAVSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYS-QNDRER 545
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/85 (37%), Positives = 42/85 (49%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + E+E F+KYG + V + GFAFV FED RDA DA R LD
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72
Query: 62 GYDRRRLSVEWARGERGRHRDGSKS 86
R R+ + R R +G S
Sbjct: 73 CGTRIRVEMSSGRSRDRRRGEGGSS 97
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 124 (48.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FVG +ET + LE++FSKYG++ V D +S GF FV FE+ DA DA+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 57 DNIPFGYDRRRLSVEWA----RGERGRHRDGS 84
+ D R++ V+ A RG +R GS
Sbjct: 68 NGK--SVDGRQIRVDQAGKSSNDRRGGYRGGS 97
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 145 (56.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 153 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 207
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 208 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 265
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY RGG
Sbjct: 266 TELEGSCLEVTLAKPVDKEQYSRYQKAARGG 296
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 342 GRGRGAAGNRAPGP 355
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 52/166 (31%), Positives = 78/166 (46%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + K GF + + D R A A+R L N
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQN 226
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + K M NQ TL V N DP + + D+ F +
Sbjct: 227 KPLR--RRKLDIHFSIP---KDNPSEKDM-NQG---TLVVFNLDPSISND-DLHGIFGAH 276
Query: 119 GNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G + +R +R+ FV+F A AL++ +R ++ + I VE
Sbjct: 277 GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVE 322
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 121 (47.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 119 (46.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 48/169 (28%), Positives = 66/169 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 50 (22.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP P +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPA-SKRESKSRSRSKSP 209
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 145 (56.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY RGG
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAARGG 334
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 380 GRGRGAAGNRAPGP 393
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 115 (45.5 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 46/154 (29%), Positives = 63/154 (40%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 143
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 144 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 195
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 196 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDH 228
DY RS + R + P RRS H
Sbjct: 127 RRSRSRSFDYNYRRSYS-PRNSRPTGRPRRSRSH 159
Score = 111 (44.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FV N +TR +L R F +YG I V D + GFA+V FED RDA DA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D R++ +++A+G+R
Sbjct: 72 DRK--WICGRQIEIQFAQGDR 90
Score = 49 (22.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 219 VYDQRRSPDHGRHR-SPVPVYDRRRSP----DYGRNRS 251
VY R D+ R+R S Y+RRRS DY RS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRS 141
Score = 44 (20.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 204 YGRGRSPAYDRYN---GPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
Y R YDRY Y++RRS + Y R S GR R
Sbjct: 105 YSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPR 154
Score = 39 (18.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 223 RRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
R++P+ + + VY R DY R R
Sbjct: 90 RKTPNQMKAKEGRNVYSSSRYDDYDRYR 117
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 141 (54.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 67/270 (24%), Positives = 107/270 (39%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 127
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P E I+ +F
Sbjct: 128 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKC-EIKVAQPKE 233
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYN-GPVYDQRRSP 226
+ +Y S RG R + G G Y +N G Y Q P
Sbjct: 234 VYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGN---Y--WNQGYGYQQGYGP 288
Query: 227 DHGRHR-SPVPVYDRRRSPDYGRNRSPNFG 255
+G + SP Y DY + S N+G
Sbjct: 289 GYGGYDYSPYGYYGYGPGYDYSQG-STNYG 317
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 124 (48.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 38/91 (41%), Positives = 47/91 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWARG---ERGRH 80
R ++ D + + VE A ERGRH
Sbjct: 66 ARDMNGKSL--DGKAIKVEQATKPSFERGRH 94
Score = 57 (25.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/78 (26%), Positives = 24/78 (30%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRG 299
Query: 216 NGPVYD-QRRSPDHGRHR 232
P Y R D+ R
Sbjct: 300 PPPSYGGSSRYDDYSSSR 317
Score = 44 (20.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYGDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYG 305
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 125 (49.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 49/161 (30%), Positives = 65/161 (40%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 143
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 144 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 195
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 196 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 235
DY RS Y N P RRS H + S V
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDSQV 165
Score = 111 (44.1 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FV N +TR +L R F +YG I V D + GFA+V FED RDA DA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D R++ +++A+G+R
Sbjct: 72 DRK--WICGRQIEIQFAQGDR 90
Score = 49 (22.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 219 VYDQRRSPDHGRHR-SPVPVYDRRRSP----DYGRNRS 251
VY R D+ R+R S Y+RRRS DY RS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRS 141
Score = 39 (18.8 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 223 RRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
R++P+ + + VY R DY R R
Sbjct: 90 RKTPNQMKAKEGRNVYSSSRYDDYDRYR 117
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 121 (47.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 113 (44.8 bits), Expect = 0.00013, P = 0.00013
Identities = 47/169 (27%), Positives = 65/169 (38%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGRHXXX-------XXXXXXXXXXXXXXD 203
+ V+ Y DS R PRR GYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRSR 143
Query: 204 YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
Y R +S + R + RS + +S R RS R+RSP
Sbjct: 144 YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSP 192
Score = 49 (22.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 224 RSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
RS R RSP P +R S R++SP
Sbjct: 182 RSRSRSRSRSPPPT-SKRESNSRSRSKSP 209
>ZFIN|ZDB-GENE-040912-155 [details] [associations]
symbol:ncoa5 "nuclear receptor coactivator 5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR004154 ZFIN:ZDB-GENE-040912-155 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF52954 Gene3D:3.40.50.800
GeneTree:ENSGT00530000064134 EMBL:CR847793 EMBL:CABZ01015279
IPI:IPI00864633 Ensembl:ENSDART00000124774 ArrayExpress:F1QRD4
Bgee:F1QRD4 Uniprot:F1QRD4
Length = 622
Score = 127 (49.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 55/185 (29%), Positives = 86/185 (46%)
Query: 1 MSRPIFVGNFEY-ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59
+ R IFVGN + ++E LF YG+I+ + + G+ FV FE DA A G +
Sbjct: 25 LERRIFVGNLPTAHMAKKDMEDLFRPYGKIQALSLFRGYGFVQFERLEDAEAAKAGHNGR 84
Query: 60 PF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD-IKRHFEP 117
+ GY +L V A ER +++ S+S +RP+ + + + +P R R R +
Sbjct: 85 VYRGY---KLDVNMA-AERRQNK--SRSSPPRRPSSS-YGESREP-RPRSRSPVHARDSR 136
Query: 118 YGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP 177
Y H R R E++ +T+ E DR +R E K+ S R++ YD
Sbjct: 137 Y----H-RESREMRASSRESRPSSTR--EHEDRPPAEERYRGSESREKEPSLREEGYDRY 189
Query: 178 RRGGY 182
RG Y
Sbjct: 190 YRGDY 194
Score = 59 (25.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 203 DYGRGRSPAY-DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 246
DY R + AY DRY P ++ RR P+ R R +RRR+ Y
Sbjct: 195 DYYRKKDEAYSDRYRDP-WNGRREPEEERIRPE----ERRRNELY 234
Score = 56 (24.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 208 RSPAYDRYNGPVYDQRRSPDHG---RHRSPVPVYDRRRSPDYGRNR 250
R YDRY YD R D R+R P ++ RR P+ R R
Sbjct: 182 REEGYDRYYRGDYDYYRKKDEAYSDRYRDP---WNGRREPEEERIR 224
Score = 42 (19.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY-DRRRSPDYGRNRSP 252
R + P+ R G YD+ D+ +R Y DR R P GR R P
Sbjct: 175 REKEPSL-REEG--YDRYYRGDYDYYRKKDEAYSDRYRDPWNGR-REP 218
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 137 (53.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 72/238 (30%), Positives = 97/238 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 73 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 118
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 119 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSVSLRRSRSASLR 177
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R G R RS + + P + RSP RS P
Sbjct: 178 RSRSGSIKGSRYFQSRSRSRSRSRSLSRPRS-SRSKSRSPSPKRSRSPSGSPRRSASP 234
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 135 (52.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 61/184 (33%), Positives = 81/184 (44%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + ELER FS YG + V + GFAFV FED RDA DA+ GLD
Sbjct: 11 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVLGLDGKII 70
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYGN 120
R R+ V R R+ D + +RP FDP R E K H+ Y
Sbjct: 71 CGSRVRVEVSTGMPRRSRY-DRPPA---RRP--------FDPNDRCYECGEKGHYA-YDC 117
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL-KDDSERDDRYDSPRR 179
+ R RR+ + + ++ + S RS+ R S Y + S R R SPRR
Sbjct: 118 HRYSRRRRSRSRSRSRSRSRGRRYSRSRSRSR-GRRSRSASYRRSRSISPRRYRSFSPRR 176
Query: 180 GGYG 183
G
Sbjct: 177 SRSG 180
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 136 (52.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 72/238 (30%), Positives = 97/238 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 73 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 118
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 119 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSISLRRSRSASLR 177
Query: 179 RGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVP 236
R G R RS + + P + RSP RS P
Sbjct: 178 RSRSGSIKGSRYFQSPSRSRSRSRSISRPRS-SRSKSRSPSPKRSRSPSGSPRRSASP 234
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 121 (47.7 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 37/96 (38%), Positives = 45/96 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK 94
D R L V+ AR GR D S P +
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPPRR 109
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 34/94 (36%), Positives = 46/94 (48%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 83
Query: 157 VISVE---YALKDDSERDDRYDSPRR---GGYGR 184
+ V+ Y DS R PRR GGYGR
Sbjct: 84 ELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR 117
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 144 (55.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 193 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 247
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S +
Sbjct: 248 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNG 305
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY +GG
Sbjct: 306 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 144 (55.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 193 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 247
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ S +
Sbjct: 248 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVLAMNSLNG 305
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY +GG
Sbjct: 306 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 336
Score = 36 (17.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A R GP
Sbjct: 383 GRGRGAAGSRAPGP 396
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 120 (47.3 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 37/94 (39%), Positives = 44/94 (46%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
D R L V+ AR GR D S P
Sbjct: 78 AVL--DGRELRVQMAR--YGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 143
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 144 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 195
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYDR 126
Query: 196 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
Score = 111 (44.1 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FV N +TR +L R F +YG I V D + GFA+V FED RDA DA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D R++ +++A+G+R
Sbjct: 72 DRK--WICGRQIEIQFAQGDR 90
Score = 53 (23.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 219 VYDQRRSPDHGRHR-SPVPVYDRRRSP----DYGRNRS 251
VY R D+ R+R S YDRRRS DY RS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYDRRRSRSRSFDYNYRRS 141
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 138 (53.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 66/269 (24%), Positives = 106/269 (39%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKC-EIKVAQPKE 233
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
+ +Y S GG G YG + Y Y Q P
Sbjct: 234 VYQQQQYGS---GGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG------YQQGYGPG 284
Query: 228 HGRHR-SPVPVYDRRRSPDYGRNRSPNFG 255
+G + SP Y DY + S N+G
Sbjct: 285 YGGYDYSPYGYYGYGPGYDYSQG-STNYG 312
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 142 (55.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 49/151 (32%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY +GG
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 142 (55.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 49/151 (32%), Positives = 75/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++L + V A D E+ RY +GG
Sbjct: 304 TELEGSCLEVTLAKPVDKEQYSRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 62/211 (29%), Positives = 87/211 (41%)
Query: 63 YDRRR-LSVEWARGERGRHRDGSKSMAN--QRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
YD+RR SV R R ++S+++ + P +L+V R ERD++ HF G
Sbjct: 46 YDKRRGRSVS-----RSLSRSPTRSVSSDAENPGNSLYVTGLSH-RVTERDLEDHFAKEG 99
Query: 120 NV--LHV------RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 171
V +H+ R R F F+ ++ +A + + S D S L RVI+VE A + R
Sbjct: 100 KVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARR----RR 155
Query: 172 DRYDSPR-----RGGYGRHXX------XXXXXXXXXXXXXXXDYGRGRSPAYDRYN---- 216
R +P R GRH D GR SP+Y R
Sbjct: 156 GRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRGRSSS 215
Query: 217 -GPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 246
P Y +RR R SP Y+RRR Y
Sbjct: 216 YSPFYRRRRFYSPSRSPSPDDRYNRRRDRSY 246
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 43/156 (27%), Positives = 79/156 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KS-GFAFVYFEDDRDAADAIRGL 56
+FVG+ + L+ F+K+G + + KS G+ FV F + ++A +AI G+
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 57 DNIPFGYDRRRLSVEWA---RGERGRHRDGSKSMAN--QRPTKTLFVINFDPIRTRERDI 111
+ G +R + WA E R + + + N + +++V N +T + D+
Sbjct: 287 NGKWIG--KRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQ-QTTDADL 343
Query: 112 KRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKAL 145
+ F YG++ VRI + +AFV++E +E ATKA+
Sbjct: 344 RDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAI 379
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 119 (46.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 9 NFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIP 60
N +TR+++L+ LF +G I R+ + GFAF+ F DAA AI G+
Sbjct: 43 NRREDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-- 100
Query: 61 FGYDRRRLSVEWAR 74
FGYD L+VEWA+
Sbjct: 101 FGYDHLILNVEWAK 114
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 127 (49.8 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 51/176 (28%), Positives = 71/176 (40%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATK 143
P +LFV N TR D++R F YG ++ V R R FA+VQFE +A
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 144 ALESTDRSKLVDRVISVEYALKDDSE------RDDR--YDSPRRGGYGRHXXXXXXXXXX 195
AL + DR + R I +++A D ++ R Y S R Y R+
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYER 126
Query: 196 XXXXXXX-DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
DY RS Y N P RRS H + P ++ + S Y +R
Sbjct: 127 RRSRSRSFDYNYRRS--YSPRNRPTGRPRRSRSHSDNDRPNCSWNTQYSSAYYTSR 180
Score = 111 (44.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FV N +TR +L R F +YG I V D + GFA+V FED RDA DA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D R++ +++A+G+R
Sbjct: 72 DRK--WICGRQIEIQFAQGDR 90
Score = 49 (22.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 219 VYDQRRSPDHGRHR-SPVPVYDRRRSP----DYGRNRS 251
VY R D+ R+R S Y+RRRS DY RS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRS 141
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 130 (50.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNI 59
R ++VG+ R+++LE +F YG + V + GFAFV FE RDAADA+RGLD
Sbjct: 8 RKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGR 67
Query: 60 PFGYDRRRLSVEWARGERGRHRDG 83
RR VE + G+ R G
Sbjct: 68 TVC--GRRARVELSTGKYARSGGG 89
Score = 37 (18.1 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 230 RHRSPVPVYDRRRSPDYGRNRS 251
RH RRRS + R+RS
Sbjct: 128 RHCRERKARQRRRSNSFSRSRS 149
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 139 (54.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 51/164 (31%), Positives = 82/164 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN + ET Q +L LF+ +G + + + FAFV+ + + A AIR L+ Y
Sbjct: 9 LFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGRE--YR 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH- 123
R L VE ++G R + +K +FV N + E D+ F PYG VL
Sbjct: 67 GRSLVVEESKG---RPLNSTK----------VFVGNLCASCSVE-DLYDLFSPYGKVLDC 112
Query: 124 --VRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
V+ + + +AFV E +E+A +A+E + + R ++VE
Sbjct: 113 DKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVE 156
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 129 (50.5 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 41/146 (28%), Positives = 69/146 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH----YK 59
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
+++ + + SK N+ T T L V N P T + ++ F YG
Sbjct: 60 LHGVNI---------NVEASK---NKSKTSTKLHVGNISPTCTN-KSLRSKFLCYGRAFI 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTD 149
+ I ++F FV + +++ AL +D
Sbjct: 107 LDIFKDFFFVHQQKKKKKVHALRISD 132
Score = 44 (20.5 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 13/48 (27%), Positives = 14/48 (29%)
Query: 172 DRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPV 219
DR+ P G YGR RSP R PV
Sbjct: 264 DRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLR-RATAPV 310
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 141 (54.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 48/176 (27%), Positives = 83/176 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL+ LF +YG I + + GF V + D R + A+R L
Sbjct: 165 SRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQG 224
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
+R+L + ++ + + S+ NQ TL V N P RD++ F Y
Sbjct: 225 KLL--KKRKLDIHFSIPKD----NPSEKDVNQG---TLVVFNLAP-SVSNRDLENIFGVY 274
Query: 119 GNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 171
G + +R +R+ FV+F A AL++ +R+++ + I +E++ + R+
Sbjct: 275 GEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRN 330
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 132 (51.5 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 71/231 (30%), Positives = 95/231 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 73 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 118
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 119 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSVSLRRSRSASLR 177
Query: 179 R---GGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRS 225
R G G + RSP+ R P RRS
Sbjct: 178 RSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSPRRS 228
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 139 (54.0 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 50/151 (33%), Positives = 74/151 (49%)
Query: 34 MKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP 92
MK+ GFAFV +E R AA A R L +++V+WA E D +++
Sbjct: 191 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV----- 245
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR 150
K L+V N I T E IK+ F + G V V+ R++AFV F T+E+A A+ + +
Sbjct: 246 -KILYVRNL-MIETTEDTIKKVFGQFNPGCVERVKKIRDYAFVHFTTREDAIHAMNNLNG 303
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
+L + V A D E+ RY +GG
Sbjct: 304 VELEGSCLEVTLAKPVDKEQYTRYQKAAKGG 334
Score = 37 (18.1 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 205 GRGRSPAYDRYNGP 218
GRGR A +R GP
Sbjct: 382 GRGRGAAGNRAPGP 395
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 131 (51.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 71/231 (30%), Positives = 95/231 (41%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 73 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 118
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYDSPR 178
+ R RR+ + + ++ + S RS+ R S + + S R R S R
Sbjct: 119 CHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSISLRRSRSASLR 177
Query: 179 R---GGY-GRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRS 225
R G G + RSP+ R P RRS
Sbjct: 178 RSRSGSIKGSRSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRS 228
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 47/172 (27%), Positives = 83/172 (48%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA +
Sbjct: 402 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 461
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+ +D G K+ +KTL + N T E ++ FE
Sbjct: 462 TEI--DGRSISLYYT-GEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEET-LQEVFE 517
Query: 117 PYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
H+++ +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 518 ---KATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 566
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 554
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 555 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-DTTEETLKESFDG 604
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 605 SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 663
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 664 GGRGGGRGGFG 674
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---G--FAFVYFEDDRDAADAI 53
I+VGN + R ++E +F KYG I +D+K+ G FAFV FED RDA DA+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 115 (45.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/76 (42%), Positives = 39/76 (51%)
Query: 7 VGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDN 58
V N Y T L R+F KYGR+ +R +S GFAFV F D RDA DA+ +D
Sbjct: 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 59 IPFGYDRRRLSVEWAR 74
D R L V+ AR
Sbjct: 78 AIL--DGRELRVQMAR 91
Score = 109 (43.4 bits), Expect = 0.00041, P = 0.00041
Identities = 48/167 (28%), Positives = 66/167 (39%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDR 156
RT ++R FE YG V V I R+ FAFV+F + +A A+++ D + L R
Sbjct: 24 RTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDGR 83
Query: 157 VISVE---YALKDDSERDD----RYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRS 209
+ V+ Y DS R S GG RH R RS
Sbjct: 84 ELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSRSPRRRRRSRSRSRSRSRS 143
Query: 210 PAYDRYN---GPVYDQRRSPDH--GRHRSPVPVYDRRRSPDYGRNRS 251
+ RY+ Y + RS H + +S P R RS R+RS
Sbjct: 144 RSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRS 190
Score = 49 (22.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 204 YGRGRSPAYDRYNG----PVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNR 250
Y R RS +Y R P + +SP R RS R RS NR
Sbjct: 149 YSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASNR 199
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 132 (51.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 73/241 (30%), Positives = 97/241 (40%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN-IP 60
++VGN + ELER FS YG + V + GFAFV FED RDA DA+RGLD +
Sbjct: 40 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 99
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
G R+ VE + G R R + A +RP FDP R E K H+ Y
Sbjct: 100 CG---SRVRVELSTGMPRRSRF-DRPPA-RRP--------FDPNDRCYECGEKGHYA-YD 145
Query: 120 NVLHVRIRRNF---AFVQFETQEEATKALESTDRSK-LVDRVISVEYALKDDSERDDRYD 175
+ R RRN + + ++ + S RS+ R S + + S R R
Sbjct: 146 CHRYSRRRRNLKNRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRS-RSVSLRRSRSA 204
Query: 176 SPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 235
S RR G R RS + + P + RSP RS
Sbjct: 205 SLRRSRSGSIKGSRYFQSRSRSRSRSRSLSRPRS-SRSKSRSPSPKRSRSPSGSPRRSAS 263
Query: 236 P 236
P
Sbjct: 264 P 264
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGL-------D 57
+++G ++E F YG++ V MK+GF FV F+D RDA DA+ L +
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGE 63
Query: 58 NIPFGYDRRRLSVEWAR---GERGRH----RDGSKSMANQ--RPTKTLFVINFDPIRTR 107
+ + RR++ R G RGR + G + +N+ RP T F + D + TR
Sbjct: 64 RVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTR 122
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGL-------D 57
+++G ++E F YG++ V MK+GF FV F+D RDA DA+ L +
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGE 63
Query: 58 NIPFGYDRRRLSVEWAR---GERGRH----RDGSKSMANQ--RPTKTLFVINFDPIRTR 107
+ + RR++ R G RGR + G + +N+ RP T F + D + TR
Sbjct: 64 RVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDNLSTR 122
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 140 (54.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG--FAFVYFEDDRDAADAIRGLDNI 59
SR ++VGN + + +L+ F +G +E V + AFV F+D +A +A +G+ N
Sbjct: 913 SRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNEAINAKKGMHNQ 972
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRP------TKTLFVINFDPIRTRERDIKR 113
G + + V + + +G + P ++ +++ N E++I++
Sbjct: 973 VLG--SQYIVVNFRHPKSDDFINGVPVVPITTPETLNSISRAIYIGNVSD-NLPEKEIRK 1029
Query: 114 HFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
E YG + +RI R AFV F AT AL++ + KL D ++ V Y
Sbjct: 1030 ECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTLNGKKLGDTIVRVNY 1080
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 116 (45.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGL-DNIPF 61
R ++VG +T + LE F K+G++ D+K+G+AFV F++++ A DAI + D+I
Sbjct: 175 RRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSI-- 232
Query: 62 GYDRRRLSVEWARGERGRHRD 82
D ++ VE + + +H D
Sbjct: 233 -VDGEKILVEKSHSGK-KHPD 251
Score = 103 (41.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 42/143 (29%), Positives = 63/143 (44%)
Query: 46 DRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS---KSMA-NQRPTKTLFVINF 101
DRD D R D YDR S E R R R R GS KS+ + + ++V
Sbjct: 128 DRDRHDRDRSRDR----YDRHDRSRERNRS-RTRSRSGSRRRKSIDFSLLAERRVYVGRI 182
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
TRE ++ F +G VL ++ +AFV+F+ ++ A A+E S + I VE
Sbjct: 183 SNKTTRE-SLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEMHDSIVDGEKILVE 241
Query: 162 YALKDDSERDDRYDSPRRGGYGR 184
+ D+ + RG + R
Sbjct: 242 KSHSGKKHPDECFICRGRGHWAR 264
Score = 58 (25.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/48 (45%), Positives = 24/48 (50%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY--GRNRS 251
R RSP Y R NG + RS D R RS DRR D GR+RS
Sbjct: 346 RSRSPRY-RSNGGNRYRDRSRDRSRDRSG----DRRGGSDRRSGRDRS 388
Score = 50 (22.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 214 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRN 249
RYN P Y+ + ++GR+R R RSP Y N
Sbjct: 322 RYN-P-YNNNNNNNNGRNRDRSYSRSRSRSPRYRSN 355
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 116 (45.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 47/182 (25%), Positives = 84/182 (46%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FV F + ++SEL +F +G ++ V + +GFAFV FE+ AA AI + F
Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA-- 184
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ L V +++ R+R K++ + L + RE ++ F ++
Sbjct: 185 NQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDL------ARENSLETTFSS----VNT 234
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS----ERDDRYDSPRRG 180
R ++F ++E +ALE + + VI+VE +DD+ R +R RG
Sbjct: 235 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE---RDDNPPPIRRSNRGGFRGRG 291
Query: 181 GY 182
G+
Sbjct: 292 GF 293
Score = 113 (44.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 78 GRHRDGSKSMANQRP---TKT-LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFV 133
G H G M +++ + T LFV F P+ +E ++ F P+G + V+I FAFV
Sbjct: 105 GEHMHGRPPMHHRQEGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFV 163
Query: 134 QFETQEEATKALESTDRSKLVDRVISVEYA 163
+FE E A KA+E ++ + V Y+
Sbjct: 164 EFEEAESAAKAIEEVHGKSFANQPLEVVYS 193
Score = 58 (25.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/71 (38%), Positives = 29/71 (40%)
Query: 167 DSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYD--RYN-GPVYDQR 223
DS R YDSPR GGY R YG R YD R + GP D
Sbjct: 348 DSPRGG-YDSPR-GGYSR---GGYGGPRNDYGPPRGSYGGSRG-GYDGPRGDYGPPRDAY 401
Query: 224 RSPDHGRHRSP 234
R+ D R RSP
Sbjct: 402 RTRDAPRERSP 412
Score = 51 (23.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 27/79 (34%), Positives = 30/79 (37%)
Query: 174 YDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 233
YDSPR GGY DYG R +Y G YD R D+G
Sbjct: 347 YDSPR-GGYD---SPRGGYSRGGYGGPRNDYGPPRG-SYGGSRGG-YDGPRG-DYG---- 395
Query: 234 PVPVYDRRRSPDYGRNRSP 252
P D R+ D R RSP
Sbjct: 396 --PPRDAYRTRDAPRERSP 412
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 119 (46.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+F+G ++T + LE++FSKYG+I V D ++ GF FV FE+ DA DA+ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 57 DNIPFGYDRRRLSVEWA---RGER-GRHRDGS 84
+ D R++ V+ A G+R G +R GS
Sbjct: 67 NGK--AVDGRQIRVDQAGKSSGDRRGGYRGGS 96
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 53/186 (28%), Positives = 86/186 (46%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSG----FAFVYFEDDRDAADA 52
M + + + +SEL RLFSK+G I + + ++G + FV + +R AA A
Sbjct: 39 MKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAA 98
Query: 53 IRGLDNIPFGYDRR--RLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 110
+ G+D GY+ R RL V +AR + S S L+V N P E+
Sbjct: 99 VNGMD----GYETRGKRLKVAFARPSE--YESTSSS---------LYVGNL-PTYMDEKK 142
Query: 111 IKRHFEPYGNVLHVRI-RRNF-------AFVQFETQEEATKALESTDRSKL--VDRVISV 160
++ F YGN++ V + R F AF+QFE +A A DR + R ++V
Sbjct: 143 VRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTV 202
Query: 161 EYALKD 166
++ ++
Sbjct: 203 KFVERE 208
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 131 (51.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 51/197 (25%), Positives = 86/197 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK--------SGFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 66 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILF---KDAASVEKVL 122
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 123 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 168
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 169 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHT-ISGSKCEIKVAQPKE 227
Query: 168 SERDDRYDSPRRGGYGR 184
+ +Y S RG R
Sbjct: 228 VYQQQQYGSGGRGNRNR 244
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 127 (49.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + ELER F YG + V + +GFAFV FED RDA D++RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVI 72
Query: 62 GYDRRRLSVEWARGERGRH 80
R R+ + R R+
Sbjct: 73 CGSRVRVELSTGMPRRSRY 91
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 42/157 (26%), Positives = 80/157 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI----ERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
+FV + YE +LE LFSKYG++ +D K G+ FV F +++A AI LD
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELD 170
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ Y ++L R + ++ ++ P+ LF+ P + +++ FEP
Sbjct: 171 G--YQYQNKKLLC--------RLSNLYTNLNSKYPSNNLFIKPL-PYDVTDDQLRKLFEP 219
Query: 118 YGNVLHVRI------RRNFA-FVQFETQEEATKALES 147
+G ++ ++ + FA FV+F ++ +A+KA+++
Sbjct: 220 FGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDA 256
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 109 (43.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 146
K+ +I + E D+K+ F +G VL +I +R FAFV F+ EA KAL
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALT 294
Query: 147 STDRSKLVDRVISVEYALKDD 167
+ + K+ DR ++V++A+ D
Sbjct: 295 AMNGKKIKDRQVAVDWAIAKD 315
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI--ERVDMK-----SGFAFVYFEDDRDAADAIRGLD 57
+ + N ++ EL+++FSK+G + R+ +K GFAFV F+ +A A R
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKA-RAAM 184
Query: 58 NIPFGYDRRRLSVEW 72
N DR + V+W
Sbjct: 185 NRKAIRDRP-VEVDW 198
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 132 (51.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 47/170 (27%), Positives = 82/170 (48%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA +
Sbjct: 46 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 105
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+++D G K+ +KTL + N T E ++ FE
Sbjct: 106 TEI--DGRSISLYYT-GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEET-LQEVFE 161
Query: 117 PYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ V +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 162 K-ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 210
Score = 121 (47.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 198
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 199 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-ETTEETLKESFDG 248
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 249 SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 307
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 308 GGRGGGRGGFG 318
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 131 (51.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 88 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 146
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 147 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 199
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 200 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 259
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 321 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 366
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 129 (50.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 51/197 (25%), Positives = 86/197 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKC-EIKVAQPKE 233
Query: 168 SERDDRYDSPRRGGYGR 184
+ +Y S RG R
Sbjct: 234 VYQQQQYGSGGRGNRNR 250
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 135 (52.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA
Sbjct: 392 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 451
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+++D G K+ +KTL + N T E ++ FE
Sbjct: 452 TEI--DGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET-LQEVFE 507
Query: 117 PYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ V +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 508 K-ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 556
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 545 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-DTTEETLKESFDG 594
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 595 SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 653
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 654 GGRGGGRGGFG 664
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 111 (44.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 60 (26.2 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 29/102 (28%), Positives = 33/102 (32%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D S R D P RG GYGR YG RS R
Sbjct: 237 DYTYRDYSHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 296
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 297 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 338
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG D Y G D P G +R Y RS R P++G
Sbjct: 251 DYPSRGYGDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 302
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 135 (52.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA
Sbjct: 393 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 452
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+++D G K+ +KTL + N T E ++ FE
Sbjct: 453 TEI--DGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET-LQEVFE 508
Query: 117 PYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ V +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 509 K-ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 557
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 546 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-DTTEETLKESFDG 595
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 596 SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 654
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 655 GGRGGGRGGFG 665
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 135 (52.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 47/170 (27%), Positives = 81/170 (47%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA
Sbjct: 394 ARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 453
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+++D G K+ +KTL + N T E ++ FE
Sbjct: 454 TEI--DGRSISLYYT-GEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET-LQEVFE 509
Query: 117 PYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ V +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 510 K-ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 558
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 546
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 547 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-DTTEETLKESFDG 596
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 597 SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 655
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 656 GGRGGGRGGFG 666
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 129 (50.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 51/197 (25%), Positives = 86/197 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKC-EIKVAQPKE 233
Query: 168 SERDDRYDSPRRGGYGR 184
+ +Y S RG R
Sbjct: 234 VYQQQQYGSGGRGNRNR 250
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+F+G +ET + LE+ F+KYGRI V D ++ GF FV FE+ DA DA+ +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 57 DNIPFGYDRRRLSVEWA---RGER-GRHRDGS 84
+ D R++ V+ A GER G +R GS
Sbjct: 67 NGK--SVDGRQIRVDQAGKSSGERRGGYRGGS 96
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 94 (38.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEAT 142
RP K LF+ + T E+ ++ F YG ++ V + R FAFV FE+ +A
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 143 KALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
A + L + I VE A K E + Y SPR GY
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFE--NVYLSPRDDGY 101
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 1 MSRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57
M+ +F+GN ++S++E +FSKYG+I + GFAFV + ++R+A A+ G D
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 92 (37.4 bits), Expect = 0.00045, P = 0.00045
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 156 RVISVEYALKDDSER 170
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 1 MSRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57
M+ +F+GN ++S++E +FSKYG+I + GFAFV + ++R+A A+ G D
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 92 (37.4 bits), Expect = 0.00045, P = 0.00045
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 156 RVISVEYALKDDSER 170
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 1 MSRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57
M+ +F+GN ++S++E +FSKYG+I + GFAFV + ++R+A A+ G D
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 92 (37.4 bits), Expect = 0.00045, P = 0.00045
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N + + ++ D++ F YG ++ + + FAFVQ+ + A A+ D +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 156 RVISVEYALKDDSER 170
+V+ + A + R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|B4DSU6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:AL135744 HOGENOM:HOG000231958 HOVERGEN:HBG002302
UniGene:Hs.508848 UniGene:Hs.708738 HGNC:HGNC:5035 ChiTaRS:HNRNPC
EMBL:AK299923 IPI:IPI00910718 SMR:B4DSU6 STRING:B4DSU6
Ensembl:ENST00000557442 Uniprot:B4DSU6
Length = 147
Score = 111 (44.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 1 MSRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57
M+ +F+GN ++S++E +FSKYG+I + GFAFV + ++R+A A+ G D
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 110 (43.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + LE++FSKYG+I V D ++ GF FV FE+ DA DA+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 57 DNIPFGYDRRRLSVEWA---RGERGR-HRDGS 84
+ D R++ V+ A R R +R GS
Sbjct: 68 NGK--SVDGRQIRVDQAGKSSDNRSRGYRGGS 97
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 129 (50.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 63/269 (23%), Positives = 106/269 (39%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +D++ + L
Sbjct: 76 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKVL 132
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 133 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 178
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ ++ K LE + + ++ A +
Sbjct: 179 GQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKC-EIKVAQPKE 237
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
+ +Y S GG G YG + Y Y Q P
Sbjct: 238 VYQQQQYGS---GGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG------YQQGYGPG 288
Query: 228 HGRHR-SPVPVYDRRRSPDYGRNRSPNFG 255
+G + SP Y DY + S N+G
Sbjct: 289 YGGYDYSPYGYYGYGPGYDYSQG-STNYG 316
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 129 (50.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 63/269 (23%), Positives = 106/269 (39%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +D++ + L
Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKVL 133
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 134 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 179
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ ++ K LE + + ++ A +
Sbjct: 180 GQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKC-EIKVAQPKE 238
Query: 168 SERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRYNGPVYDQRRSPD 227
+ +Y S GG G YG + Y Y Q P
Sbjct: 239 VYQQQQYGS---GGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYG------YQQGYGPG 289
Query: 228 HGRHR-SPVPVYDRRRSPDYGRNRSPNFG 255
+G + SP Y DY + S N+G
Sbjct: 290 YGGYDYSPYGYYGYGPGYDYSQG-STNYG 317
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 110 (43.8 bits), Expect = 0.00016, P = 0.00016
Identities = 45/160 (28%), Positives = 70/160 (43%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSK 152
++V N DP R ER+++ F+ +G + +V + R +AF++F+ + +A A+ + DR
Sbjct: 4 VYVGNLDP-RVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKN 62
Query: 153 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAY 212
VE + KD R RRGG + RGR
Sbjct: 63 ----GWRVELSHKDKGGRGG--GGGRRGGI----EDSKCYECGELGHFARECRRGRGSV- 111
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
R P +RRSPD+G R + RR SP R+ +P
Sbjct: 112 -RRRSPSPRRRRSPDYGYARRSISPRGRR-SPPRRRSVTP 149
Score = 104 (41.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLD 57
M+R ++VGN + + ELE F +G + V + G+AF+ F+D+RDA DAI LD
Sbjct: 1 MTR-VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
Query: 58 NIPFGYDRRRLSVE--WARGERGRHRDG 83
G+ R LS + RG G R G
Sbjct: 60 R-KNGW-RVELSHKDKGGRGGGGGRRGG 85
Score = 52 (23.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 240 RRRSPDYGRNRSPNFG 255
RRRSP R RSP++G
Sbjct: 112 RRRSPSPRRRRSPDYG 127
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 170 RDDRYDSPRR--GGYGR 184
R R DSPRR YGR
Sbjct: 163 RGSRRDSPRRRDSPYGR 179
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 131 (51.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 210 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 268
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 269 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 321
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 322 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 381
Score = 39 (18.8 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 443 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 488
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 127 (49.8 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 41/153 (26%), Positives = 73/153 (47%)
Query: 9 NFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLDNIPF 61
N + + ++ LF KYG + ++M G F+ +AA A++ L++
Sbjct: 100 NVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCE- 158
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP-YGN 120
Y+ RRL V++A+ ++ + + + PT LFV N R + +K F+ GN
Sbjct: 159 -YEGRRLKVDYAKTKK-KKTYAPRETPSPVPTFNLFVANL-AFEARAKHLKEFFDADTGN 215
Query: 121 VL------HVRIRRN--FAFVQFETQEEATKAL 145
V+ H RR+ + FV F+T+++A AL
Sbjct: 216 VVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 248
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 112 (44.5 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 56/184 (30%), Positives = 78/184 (42%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDNIPF 61
++VGN + ELER FS YG + V + GFAFV FED RDA ++ +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSRVI 72
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYGN 120
R R+ V R R+ D + +RP FDP R E K H+ Y
Sbjct: 73 CGSRVRVEVSTGMPRRSRY-DRPPA---RRP--------FDPNDRCYECGEKGHYA-YDC 119
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL-KDDSERDDRYDSPRR 179
+ R RR+ + + ++ + S RS+ R S Y + S R R SPRR
Sbjct: 120 HRYSRRRRSRSRSRSRSRSRGRRYSRSRSRSR-GRRSRSASYRRSRSVSPRRSRSVSPRR 178
Query: 180 GGYG 183
G
Sbjct: 179 SRSG 182
Score = 47 (21.6 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRS---PVPVYDRRRSPDYGRNRSPN 253
R SP R + RS R RS P + RSP R+RSP+
Sbjct: 172 RSVSPRRSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSPSPKRSRSPS 222
Score = 38 (18.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 206 RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
R RS + R RS + RSP P R RSP RS
Sbjct: 186 RSRSRSRSRSRSRSVTWPRS-SRSKSRSPSP--KRSRSPSGSPQRS 228
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 131 (51.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 480 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 525
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 131 (51.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 480 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 525
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 131 (51.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 131 (51.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 131 (51.2 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
Score = 39 (18.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
DY G Y Y+ + R G +P P R P GR
Sbjct: 481 DYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGR 526
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 108 (43.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLD 57
R ++
Sbjct: 66 ARDMN 70
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 108 (43.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 8 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
Query: 53 IRGLD 57
R ++
Sbjct: 68 ARDMN 72
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 108 (43.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 8 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
Query: 53 IRGLD 57
R ++
Sbjct: 68 ARDMN 72
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 132 (51.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 47/170 (27%), Positives = 82/170 (48%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--DMKS-GFAFVYFEDDRDAADAIRGLDN 58
+R + N Y+ Q EL+ +F I V D KS G A++ F+ + DA +
Sbjct: 405 ARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQG 464
Query: 59 IPFGYDRRRLSVEWARGERGRHRD--GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D R +S+ + GE+G+++D G K+ +KTL + N T E ++ FE
Sbjct: 465 TEI--DGRSISLYYT-GEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEET-LQEVFE 520
Query: 117 PYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ V +N +AF++F + E+A +AL S ++ ++ R I +E
Sbjct: 521 K-ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 569
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 49/191 (25%), Positives = 84/191 (43%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKS-GFAFVYFEDDRDAADAIRGLD 57
S+ + + N Y + L+ +F K I + + KS G+AF+ F DA +A+ +
Sbjct: 498 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 557
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R + +E +G RG A +P+KTLFV T E +K F+
Sbjct: 558 KREI--EGRAIRLE-LQGPRGSPN------ARSQPSKTLFVKGLSE-ETTEETLKESFDG 607
Query: 118 YGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
V R + F FV F ++E+A A E+ + ++ +++++A K E
Sbjct: 608 SIRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA-KPKGEGGF 666
Query: 173 RYDSPRRGGYG 183
RGG+G
Sbjct: 667 GGRGGGRGGFG 677
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 131 (51.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 5 IFVGNF-EYETRQSELERLFSKY--GRIERV------DMKS--GFAFVYFEDDRDAADAI 53
+FVG+ + +T+++ LE FSK G ++ + D K GF F+ +ED + AA A
Sbjct: 248 LFVGSIPKNKTKENILEE-FSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R L + ++VEWA + D + MA K LFV N T E +++
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA--DPVEEPD-PEVMAK---VKVLFVRNLATTVTEEI-LEK 359
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
F +G + V+ +++AFV FE + A KA++ + ++ I + A D +R +R
Sbjct: 360 SFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKER 419
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 126 (49.4 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 50/197 (25%), Positives = 85/197 (43%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDATSVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G + + + RR F F+ F+ +E K LE + + ++ A +
Sbjct: 175 GEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHT-ISGSKCEIKVAQPKE 233
Query: 168 SERDDRYDSPRRGGYGR 184
+ +Y S RG R
Sbjct: 234 VYQQQQYGSGGRGNRNR 250
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 111 (44.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 21/78 (26%), Positives = 24/78 (30%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRERDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHR 232
P Y R D+ R
Sbjct: 300 PPPSYGGSSRYDDYSSSR 317
Score = 47 (21.6 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRERDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRERDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 111 (44.1 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 239 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 298
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 299 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 340
Score = 46 (21.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 253 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 304
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 244 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 292
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 111 (44.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 341
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 111 (44.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 341
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 111 (44.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 341
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 111 (44.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 341
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 111 (44.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 66 ARDMNGKSL--DGKAIKVEQA 84
Score = 56 (24.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 300 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 341
Score = 46 (21.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 254 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 305
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 245 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 293
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 111 (44.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 33/81 (40%), Positives = 42/81 (51%)
Query: 3 RP--IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADA 52
RP +F+G ET + LE +F KYGRI +R KS GFAFV FE DA DA
Sbjct: 7 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 66
Query: 53 IRGLDNIPFGYDRRRLSVEWA 73
R ++ D + + VE A
Sbjct: 67 ARDMNGKSL--DGKAIKVEQA 85
Score = 56 (24.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 28/102 (27%), Positives = 32/102 (31%)
Query: 161 EYALKDDSERDDRYDSPRRG-----GYGRHXXXXXXXXXXXXXXXXXDYGRGRSPAYDRY 215
+Y +D R D P RG GYGR YG RS R
Sbjct: 241 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 300
Query: 216 NGPVYD-QRRSPDHGRHRSPV----PVYDRRRSPDY--GRNR 250
P Y R D+ R Y RS Y GR+R
Sbjct: 301 PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDR 342
Score = 46 (21.3 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 18/54 (33%), Positives = 21/54 (38%)
Query: 203 DY-GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DY RG S D Y G D P G +R Y RS R P++G
Sbjct: 255 DYPSRGYSDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYG 306
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 203 DYGRGRSPAYDRYNGPVYDQR----RSPDHGRHRSPVPVYDRRRSPDYGRNRS 251
DYG S + D Y Y R R D+ H S D S YG +RS
Sbjct: 246 DYGH--SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES--YGNSRS 294
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 127 (49.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 51/205 (24%), Positives = 92/205 (44%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
R +FVG +ET + EL F KYG IE +++K+ GFAF+ F + +A D +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT-EAIDKVS 114
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
D + +++ + A+ G+ +FV + +IK +
Sbjct: 115 AADEHII--NSKKVDPKKAKARHGK----------------IFVGGLTT-EISDEEIKTY 155
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL-K 165
F +GN++ V + R+ F F+ F++++ T L+ T + K+ + + V+ A K
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK-TPKQKIAGKEVDVKRATPK 214
Query: 166 DDSER-DDRYDSPR------RGGYG 183
+++ PR RGGYG
Sbjct: 215 PENQMMGGMRGGPRGGMRGGRGGYG 239
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 49/198 (24%), Positives = 90/198 (45%)
Query: 5 IFVGNFEYETRQSELERLF-SKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRG 55
IFVG+ + L+ F S Y + +R+ +S G+ FV F D+ + A+
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 56 LDNIPFGYDRRRLSVEWAR---G--ERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRER 109
++ + R+ + G ++ +++ + P T +FV DP E
Sbjct: 238 MNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPT-VAEE 296
Query: 110 DIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+++ F PYG ++HV+I + FVQF T+ A +AL S + ++L + I + +
Sbjct: 297 HLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPS 356
Query: 168 SERDDRYDSPRRGG--YG 183
S++ D+ GG YG
Sbjct: 357 SKQTDQTQWGGSGGAYYG 374
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 113 (44.8 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 146
K +I + E D+K F YG VL V I R FAF+QF+ EA KAL+
Sbjct: 113 KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALK 172
Query: 147 STDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ ++ R ++V++A+ D +D ++ S G
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGG 206
Score = 60 (26.2 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 23/99 (23%), Positives = 47/99 (47%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER---VDMKS-----GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ V K GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTK 94
++ +++V A+ + + + ++ K+ ++ P K
Sbjct: 66 TT----FEGCKINVTIAKKKLKNKSKETRKNENSESPKK 100
WARNING: HSPs involving 348 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 268 239 0.00092 113 3 11 22 0.41 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 598
No. of states in DFA: 561 (60 KB)
Total size of DFA: 174 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.99u 0.10s 21.09t Elapsed: 00:00:01
Total cpu time: 21.02u 0.10s 21.12t Elapsed: 00:00:01
Start: Fri May 10 03:02:56 2013 End: Fri May 10 03:02:57 2013
WARNINGS ISSUED: 2