BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024366
(268 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224068024|ref|XP_002302651.1| predicted protein [Populus trichocarpa]
gi|222844377|gb|EEE81924.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/250 (79%), Positives = 218/250 (87%), Gaps = 15/250 (6%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+RP+FVGNFE+ETRQS+LERLFSKYGR+ERVDMKSGFAFVYFEDDRDAADA+RGLDNIP
Sbjct: 1 MARPVFVGNFEHETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDDRDAADAVRGLDNIP 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
FGYDRRRLSVEWARGERGRHRDG +S ANQRPTKTLFVINFDPI TR DIKRHFE YG
Sbjct: 61 FGYDRRRLSVEWARGERGRHRDGPRSTANQRPTKTLFVINFDPIHTRVEDIKRHFERYGE 120
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
VLHVRIRRNFAFVQFETQE+ATKALE T +K++DRV+SVEYAL+DDSER DRYDSPRRG
Sbjct: 121 VLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDRYDSPRRG 180
Query: 181 GYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDR 240
Y GRSPSP YRRRPSPDY R RSP YD+YNGPVYD+R+SPD+GR+
Sbjct: 181 SYN-----GRSPSPVYRRRPSPDYVRARSPVYDKYNGPVYDRRQSPDYGRN--------- 226
Query: 241 RRSPDYGRNR 250
RSP+YGRNR
Sbjct: 227 -RSPEYGRNR 235
>gi|255564609|ref|XP_002523299.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537387|gb|EEF39015.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 259
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/259 (77%), Positives = 219/259 (84%), Gaps = 23/259 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+RPIFVGNFE+ETRQSELERLFSKYGR+ERVDMKSGFAFVYFED+RDAADAIRGLDNI
Sbjct: 1 MARPIFVGNFEFETRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAADAIRGLDNIS 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
FGYDRR+LSVEWARGERGRHRDGS+SMANQRPTKTLFVINFDPI TR DIKRHFE YG
Sbjct: 61 FGYDRRKLSVEWARGERGRHRDGSRSMANQRPTKTLFVINFDPIHTRVEDIKRHFERYGE 120
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
VLHVRIRRNFAFVQFETQE+ATKALE T +K++DRV+SVEYAL+DDSER D+ DSPRRG
Sbjct: 121 VLHVRIRRNFAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDKSDSPRRG 180
Query: 181 GYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDR 240
S YGRSPSP YRRRPSPDYGR RSP YD+YNGP YD+RR
Sbjct: 181 -----SHYGRSPSPVYRRRPSPDYGRARSPVYDKYNGPSYDRRR---------------- 219
Query: 241 RRSPDYGRNRSPNFGRYRS 259
SP+YGR++SP +GRYRS
Sbjct: 220 --SPEYGRDQSPEYGRYRS 236
>gi|356520256|ref|XP_003528779.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 259
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/268 (77%), Positives = 231/268 (86%), Gaps = 12/268 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GN EY+TRQSELERLF+KYGRI+RVDMKSGFAFVY+ED+RDA +AIR LDN+PFG
Sbjct: 2 RPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+++RRLSVEWARGERGRH DGSK ANQ+PTKTLFVINFDPIRTR RDI++HFEPYGNVL
Sbjct: 62 HEKRRLSVEWARGERGRHHDGSK--ANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVL 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
HVRIRRNFAFVQFETQE+ATKALE T+ SK++DRV+SVEYAL+DD ER D YDSPRR G
Sbjct: 120 HVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRRG- 178
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR 242
Y RSPSP Y RRPSPDYGR RSP YDRYNG D RRSPD+GRHRS P Y RRR
Sbjct: 179 ----GYERSPSP-YHRRPSPDYGRPRSPVYDRYNGGGPDMRRSPDYGRHRS--PDYGRRR 231
Query: 243 SPDYGRNRSPNFGRYR--SRSPVRRSRT 268
SPDYG+ RSP +GRYR SRSPVRRSRT
Sbjct: 232 SPDYGKPRSPEYGRYRSCSRSPVRRSRT 259
>gi|255645349|gb|ACU23171.1| unknown [Glycine max]
Length = 259
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/268 (77%), Positives = 230/268 (85%), Gaps = 12/268 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GN EY+TRQSELERLF+KYGRI+RVDMKSGFAFV++ED+RDA +AIR LDN+PFG
Sbjct: 2 RPIFAGNLEYDTRQSELERLFAKYGRIDRVDMKSGFAFVFYEDERDAEEAIRALDNVPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+++RRLSVEWARGERGRH DGSK ANQ+PTKTLFVINFDPIRTR RDI++HFEPYGNVL
Sbjct: 62 HEKRRLSVEWARGERGRHHDGSK--ANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVL 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
HVRIRRNFAFVQFETQE+ATKALE T+ SK++DRV+SVEYAL+DD ER D YDSPRR G
Sbjct: 120 HVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRRG- 178
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR 242
Y RSPSP Y RRPSPDYGR RSP YDRYNG D RRSPD+GRHRS P Y RRR
Sbjct: 179 ----GYERSPSP-YHRRPSPDYGRPRSPVYDRYNGGGPDMRRSPDYGRHRS--PDYGRRR 231
Query: 243 SPDYGRNRSPNFGRYR--SRSPVRRSRT 268
SPDYG+ RSP +GRYR SRS VRRSRT
Sbjct: 232 SPDYGKPRSPEYGRYRSCSRSLVRRSRT 259
>gi|356559961|ref|XP_003548264.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Glycine
max]
Length = 264
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/257 (77%), Positives = 225/257 (87%), Gaps = 11/257 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GN EY+TRQSELERLFSKYGRI+RVDMKSGFAFVY+ED+RDA +AIR LDN+PFG
Sbjct: 2 RPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+++RRLSVEWARGERGRHRDGSK ANQ+PTKTLFVINFDPIRTR RDI++HFEPYGNVL
Sbjct: 62 HEKRRLSVEWARGERGRHRDGSK--ANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVL 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
HVRIRRNFAFVQFETQE+ATKA+E T+ SK++DRV+SVEYAL+DD ER D YDSPRRGG
Sbjct: 120 HVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGG- 178
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR 242
Y RSPSP Y RRPSPDYGR RSP YDRYNG D+RRSPD+GRHRS P Y RRR
Sbjct: 179 -----YERSPSP-YHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDYGRHRS--PDYGRRR 230
Query: 243 SPDYGRNRSPNFGRYRS 259
SPDYGR +SP++G+ RS
Sbjct: 231 SPDYGRRKSPDYGKPRS 247
>gi|449432024|ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
gi|449477961|ref|XP_004155176.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
Length = 253
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 216/236 (91%), Gaps = 5/236 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIFVGNF Y+TRQSELERLFSKYGR+ER+DMKSGFAFVYFED+RDA DAIRGLDN+PFG
Sbjct: 2 RPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTR RDI+RHFEPYG VL
Sbjct: 62 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVL 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD-SPRR-G 180
+VRIRRNFAFVQFETQE+ATKALE T SK++DRV+SVEYAL+DD ER D +D SPRR G
Sbjct: 122 NVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAG 181
Query: 181 GYGR--HSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 234
GYGR SPY RSPSP +RRRPSPDYGR SPAYDRYNGP Y++RRSPD+GR+RSP
Sbjct: 182 GYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGP-YERRRSPDYGRNRSP 236
>gi|224130604|ref|XP_002320882.1| predicted protein [Populus trichocarpa]
gi|222861655|gb|EEE99197.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/251 (78%), Positives = 215/251 (85%), Gaps = 18/251 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIFVGNFE ETRQSELERLF KYGR+ERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG
Sbjct: 1 RPIFVGNFEQETRQSELERLFRKYGRVERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 60
Query: 63 YDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
YDRRRLSVEWAR GERGRHRDG +S NQRPTKTLFVINFDPI TR DIKRHFE YG
Sbjct: 61 YDRRRLSVEWARVYAGERGRHRDGPRSTVNQRPTKTLFVINFDPIHTRVEDIKRHFERYG 120
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VLHVRIRRNFAFVQFETQE+ATKAL+ T +K++DRV+SVEYAL+DDSER DRYDSPRR
Sbjct: 121 EVLHVRIRRNFAFVQFETQEDATKALQRTHMTKILDRVVSVEYALRDDSERGDRYDSPRR 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYD 239
G Y YGRSPSPA+ RRP+PDYGRG SP YD+YNGPV+D+RRSPD+GR+
Sbjct: 181 GSY-----YGRSPSPAHHRRPNPDYGRGHSPVYDKYNGPVHDRRRSPDYGRN-------- 227
Query: 240 RRRSPDYGRNR 250
RSP+YGR+R
Sbjct: 228 --RSPEYGRHR 236
>gi|225470972|ref|XP_002267297.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Vitis
vinifera]
Length = 241
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/230 (82%), Positives = 208/230 (90%), Gaps = 6/230 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNFEYETRQS+LERLFSKYGR+ERVDMKSGFAFVYFED+ DA DAIRGLDNIPFG
Sbjct: 2 RPIFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDEHDADDAIRGLDNIPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
YDRRRLSVEWA+GERGRHR+GS+SMANQRPTKTLFVINFDPIRTR RDI+RHFEPYG VL
Sbjct: 62 YDRRRLSVEWAKGERGRHREGSRSMANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVL 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
HVRIRRNFAFVQ+ETQE+ATKALE T SK++DRV+SVEYAL+DDS D+YDSPRRGGY
Sbjct: 122 HVRIRRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDS---DKYDSPRRGGY 178
Query: 183 GR--HSPYGRSPSPAYRR-RPSPDYGRGRSPAYDRYNGPVYDQRRSPDHG 229
R SPYGRSPSP RR RPSPDYGR +SP YDRYNGP Y++ RSP++G
Sbjct: 179 SRRGESPYGRSPSPVNRRGRPSPDYGRAQSPVYDRYNGPAYERNRSPEYG 228
>gi|357514487|ref|XP_003627532.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521554|gb|AET02008.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 301
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 192/257 (74%), Positives = 215/257 (83%), Gaps = 20/257 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN EY+TRQSELERLFSKYGRIERVDMKSGFAFVY+ED+RDA +AIR LDNIPFG
Sbjct: 2 RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+D+RRLSVEWARGERGRHRDGSK NQ+PTKTLFVINFDPIRTR DI+RHF+PYG +
Sbjct: 62 HDKRRLSVEWARGERGRHRDGSK--PNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLH 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 181
HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++DRV+SVEYAL+DDS+R D Y SPRRGG
Sbjct: 120 HVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGG 179
Query: 182 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR 241
RSPSP YRRRPSPDYGR RSP YDRY GP D+RRSPD+GR+
Sbjct: 180 -----GLARSPSPGYRRRPSPDYGRPRSPVYDRYTGP--DRRRSPDYGRN---------- 222
Query: 242 RSPDYGRNRSPNFGRYR 258
RSPDYGRNRSP +GRYR
Sbjct: 223 RSPDYGRNRSPEYGRYR 239
>gi|297821068|ref|XP_002878417.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
gi|297324255|gb|EFH54676.1| arginine/serine-rich splicing factor 31 [Arabidopsis lyrata subsp.
lyrata]
Length = 264
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 194/273 (71%), Positives = 221/273 (80%), Gaps = 19/273 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR+ERVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVERVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++RRLSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V+
Sbjct: 62 YEKRRLSVEWAKGERGRPRGDAKATSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVI 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDRY SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRYGGRSPRRS 181
Query: 181 GYG----RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSP 234
R SP YGR PSP Y RRPSPD GR RSP YDRY GP Y++RRSPD+G
Sbjct: 182 LSPVYRRRPSPDYGRRPSPDYGRRPSPDNGRARSPEYDRYKGPAAYERRRSPDYG----- 236
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
RRS DYGR RSP + RYRSRSPV R R
Sbjct: 237 ------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
>gi|217072928|gb|ACJ84824.1| unknown [Medicago truncatula]
Length = 242
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 190/256 (74%), Positives = 213/256 (83%), Gaps = 20/256 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN EY+TRQSELERLFSKYGRIERVDMKSGFAFVY+ED+RDA +AIR LDNIPFG
Sbjct: 2 RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+D+RRLSVEWARGERGRHRDGSK NQ+PTKTLFVINFDPIRTR DI+RHF+PYG +
Sbjct: 62 HDKRRLSVEWARGERGRHRDGSK--PNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLH 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 181
HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++DRV+SVEYAL+DDS+R D Y SPRRGG
Sbjct: 120 HVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGG 179
Query: 182 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR 241
RSPSP YRRRPSPDYGR RSP YDRY GP D+RRSPD+GR+
Sbjct: 180 -----GLARSPSPGYRRRPSPDYGRPRSPVYDRYTGP--DRRRSPDYGRN---------- 222
Query: 242 RSPDYGRNRSPNFGRY 257
SPDYGRNRSP +GRY
Sbjct: 223 GSPDYGRNRSPEYGRY 238
>gi|388506284|gb|AFK41208.1| unknown [Medicago truncatula]
Length = 249
Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 189/254 (74%), Positives = 212/254 (83%), Gaps = 20/254 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN EY+TRQSELERLFSKYGRIERVDMKSGFAFVY+ED+RDA +AIR LDNIPFG
Sbjct: 2 RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+D+RRLSVEWARGERGRHRDGSK NQ+PTKTLFVINFDPIRTR DI+RHF+PYG +
Sbjct: 62 HDKRRLSVEWARGERGRHRDGSK--PNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLH 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 181
HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++DRV+SVEYAL+DDS+R D Y SPRRGG
Sbjct: 120 HVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGG 179
Query: 182 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR 241
RSPSP YRRRPSPDYGR RSP YDRY GP D+RRSPD+GR+
Sbjct: 180 -----GLARSPSPGYRRRPSPDYGRPRSPVYDRYTGP--DRRRSPDYGRN---------- 222
Query: 242 RSPDYGRNRSPNFG 255
RSPDYGRNRSP +G
Sbjct: 223 RSPDYGRNRSPEYG 236
>gi|388494340|gb|AFK35236.1| unknown [Medicago truncatula]
Length = 249
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 211/254 (83%), Gaps = 20/254 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN EY+TRQSELERLFSKYGRIERVDMKSGFAFVY+ED+RDA +AIR LDNIPFG
Sbjct: 2 RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+D+RRLSVEWARGERGRHRDGSK NQ+PTKTLFVINFDPIRTR DI+RHF+PYG +
Sbjct: 62 HDKRRLSVEWARGERGRHRDGSK--PNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLH 119
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 181
HVRIRRNFAFVQ+ETQE+ATKALE T+ SK++DRV+SVEYAL+DDS+R D Y SPRRGG
Sbjct: 120 HVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGG 179
Query: 182 YGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRR 241
RSPSP YRRRPSPDYGR RSP YDRY GP D+RRSPD+GR+
Sbjct: 180 -----GLARSPSPGYRRRPSPDYGRPRSPVYDRYTGP--DRRRSPDYGRN---------- 222
Query: 242 RSPDYGRNRSPNFG 255
SPDYGRNRSP +G
Sbjct: 223 GSPDYGRNRSPEYG 236
>gi|18412169|ref|NP_567120.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
gi|26454661|sp|P92964.2|RSP31_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP31
gi|16612268|gb|AAL27502.1|AF439831_1 AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|21928093|gb|AAM78075.1| AT3g61860/F21F14_30 [Arabidopsis thaliana]
gi|332646749|gb|AEE80270.1| arginine/serine-rich-splicing factor RSP31 [Arabidopsis thaliana]
Length = 264
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 192/273 (70%), Positives = 219/273 (80%), Gaps = 19/273 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++RRLSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V
Sbjct: 62 YEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVT 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDR SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRS 181
Query: 181 GYG----RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSP 234
R SP YGR PSP RRPSPDYGR RSP YDRY GP Y++RRSPD+G
Sbjct: 182 LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYG----- 236
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
RRS DYGR RSP + RYRSRSPV R R
Sbjct: 237 ------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
>gi|1707366|emb|CAA67798.1| splicing factor [Arabidopsis thaliana]
Length = 264
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 191/273 (69%), Positives = 219/273 (80%), Gaps = 19/273 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++R+LSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V
Sbjct: 62 YEKRKLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVT 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDR SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRS 181
Query: 181 GYG----RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSP 234
R SP YGR PSP RRPSPDYGR RSP YDRY GP Y++RRSPD+G
Sbjct: 182 LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYG----- 236
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
RRS DYGR RSP + RYRSRSPV R R
Sbjct: 237 ------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
>gi|6899884|emb|CAB71893.1| ARGININE/SERINE-RICH SPLICING FACTOR RSP31 [Arabidopsis thaliana]
Length = 271
Score = 346 bits (888), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 213/265 (80%), Gaps = 19/265 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++RRLSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V
Sbjct: 62 YEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVT 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDR SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRS 181
Query: 181 GYG----RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSP 234
R SP YGR PSP RRPSPDYGR RSP YDRY GP Y++RRSPD+G
Sbjct: 182 LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYG----- 236
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRS 259
RRS DYGR RSP + RYRS
Sbjct: 237 ------RRSSDYGRQRSPGYDRYRS 255
>gi|297828391|ref|XP_002882078.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
gi|297327917|gb|EFH58337.1| hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp.
lyrata]
Length = 250
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 205/254 (80%), Gaps = 23/254 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNF+Y+TRQS+LERLFSKYGR+ERVDMKSG+AFVYFED+RDA DAIRG DN FG
Sbjct: 2 RPVFVGNFDYDTRQSDLERLFSKYGRVERVDMKSGYAFVYFEDERDAEDAIRGTDNTTFG 61
Query: 63 YDRRRLSVEWARG---ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
Y+RR+LSVEWA+G ERG+ RDG K+ +NQRPTKTLFVINFDPIRTRERD++RHFEPYG
Sbjct: 62 YERRKLSVEWAKGFKGERGKPRDG-KAASNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPR 178
VL+VRIRRNFAFVQF TQE+ATKAL+ T SK++DRV+SVEYAL++D ER+DRY SPR
Sbjct: 121 KVLNVRIRRNFAFVQFATQEDATKALDCTHNSKILDRVVSVEYALREDGEREDRYAGSPR 180
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPV--------YDQRRSPDHGR 230
R RSPSP YRRRPSPDYGR RSP YDRY GP +RRSPD+GR
Sbjct: 181 R----------RSPSPVYRRRPSPDYGRPRSPEYDRYKGPAPYERRRSPDYRRRSPDYGR 230
Query: 231 HRSPVPVYDRRRSP 244
R+ P YD RSP
Sbjct: 231 ARARSPGYDSSRSP 244
>gi|15226019|ref|NP_182184.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|4415941|gb|AAD20171.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|17529006|gb|AAL38713.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|24030496|gb|AAN41395.1| putative arginine/serine-rich splicing factor [Arabidopsis
thaliana]
gi|222423842|dbj|BAH19886.1| AT2G46610 [Arabidopsis thaliana]
gi|330255634|gb|AEC10728.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 250
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/269 (65%), Positives = 213/269 (79%), Gaps = 25/269 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R ++VGNF+Y+TR S+LERLFSK+GR++RVDMKSG+AFVYFED+RDA DAIR DN FG
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFG 61
Query: 63 YDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
Y RR+LSVEWA+ GERG+ RDG K+++NQRPTKTLFVINFDPIRTRERD++RHFEPYG
Sbjct: 62 YGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYG 120
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VL+VR+RRNFAFVQF TQE+ATKAL+ST SKL+D+V+SVEYAL++ ER+DRY RR
Sbjct: 121 KVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSRR 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPV-YDQRRSPDHGRHRSPVPVY 238
RSPSP YRRRPSPDY R RSP YDRY GP Y++R+SPD+G
Sbjct: 181 ---------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYG--------- 222
Query: 239 DRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
RRS DYGR R+ + G RSRSP++R+R
Sbjct: 223 --RRSSDYGRARARSPGYDRSRSPIQRAR 249
>gi|297745508|emb|CBI40588.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 316 bits (809), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 159/201 (79%), Positives = 178/201 (88%), Gaps = 6/201 (2%)
Query: 32 VDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR 91
+ + SGFAFVYFED+ DA DAIRGLDNIPFGYDRRRLSVEWA+GERGRHR+GS+SMANQR
Sbjct: 14 LHISSGFAFVYFEDEHDADDAIRGLDNIPFGYDRRRLSVEWAKGERGRHREGSRSMANQR 73
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS 151
PTKTLFVINFDPIRTR RDI+RHFEPYG VLHVRIRRNFAFVQ+ETQE+ATKALE T S
Sbjct: 74 PTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKALECTHMS 133
Query: 152 KLVDRVISVEYALKDDSERDDRYDSPRRGGYGR--HSPYGRSPSPAYRR-RPSPDYGRGR 208
K++DRV+SVEYAL+DDS D+YDSPRRGGY R SPYGRSPSP RR RPSPDYGR +
Sbjct: 134 KILDRVVSVEYALRDDS---DKYDSPRRGGYSRRGESPYGRSPSPVNRRGRPSPDYGRAQ 190
Query: 209 SPAYDRYNGPVYDQRRSPDHG 229
SP YDRYNGP Y++ RSP++G
Sbjct: 191 SPVYDRYNGPAYERNRSPEYG 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
++ +FV NF+ TR ++ER F YG++ V ++ FAFV +E DA A+
Sbjct: 75 TKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQYETQEDATKAL 127
>gi|357514489|ref|XP_003627533.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355521555|gb|AET02009.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 217
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 162/223 (72%), Positives = 183/223 (82%), Gaps = 20/223 (8%)
Query: 34 MKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT 93
MKSGFAFVY+ED+RDA +AIR LDNIPFG+D+RRLSVEWARGERGRHRDGSK NQ+PT
Sbjct: 1 MKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSK--PNQKPT 58
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
KTLFVINFDPIRTR DI+RHF+PYG + HVRIRRNFAFVQ+ETQE+ATKALE T+ SK+
Sbjct: 59 KTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKI 118
Query: 154 VDRVISVEYALKDDSERDDRY-DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 212
+DRV+SVEYAL+DDS+R D Y SPRRGG RSPSP YRRRPSPDYGR RSP Y
Sbjct: 119 LDRVVSVEYALRDDSDRVDNYGGSPRRGG-----GLARSPSPGYRRRPSPDYGRPRSPVY 173
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
DRY GP D+RRSPD+GR+ RSPDYGRNRSP +G
Sbjct: 174 DRYTGP--DRRRSPDYGRN----------RSPDYGRNRSPEYG 204
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ TR S++ER F YG + V ++ FAFV +E DA A+ N+
Sbjct: 58 TKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALE-CTNMS 116
Query: 61 FGYDRRRLSVEWA 73
D R +SVE+A
Sbjct: 117 KILD-RVVSVEYA 128
>gi|115456922|ref|NP_001052061.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|38344865|emb|CAE01291.2| OSJNBa0020P07.8 [Oryza sativa Japonica Group]
gi|113563632|dbj|BAF13975.1| Os04g0118900 [Oryza sativa Japonica Group]
gi|116317923|emb|CAH65946.1| H0716A07.4 [Oryza sativa Indica Group]
gi|218194243|gb|EEC76670.1| hypothetical protein OsI_14641 [Oryza sativa Indica Group]
gi|222628274|gb|EEE60406.1| hypothetical protein OsJ_13581 [Oryza sativa Japonica Group]
Length = 245
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 180/223 (80%), Gaps = 5/223 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGRI+R+DMKSGFAFVYFED+RD +AIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRIDRIDMKSGFAFVYFEDERDGDEAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDG-SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRRLSVEW+RG+RG RDG SK N +PTKTLFVINFDPI TR DI+RHFEP+G +
Sbjct: 62 PGRRRLSVEWSRGDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHFEPFGKL 121
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
+VRIRRNFAFVQFETQEEATKALE+T +KL+DRVISVEYA +DD+ER DRYD RGG
Sbjct: 122 SNVRIRRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRDDTERGDRYDGA-RGG 180
Query: 182 YGR--HSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN-GPVYD 221
YGR SPY RS SP YR RPSPDYGR RSP Y Y+ PV D
Sbjct: 181 YGRRDDSPYRRSVSPVYRSRPSPDYGRQRSPVYGSYDRSPVND 223
>gi|116784190|gb|ABK23251.1| unknown [Picea sitchensis]
Length = 299
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 166/291 (57%), Positives = 202/291 (69%), Gaps = 25/291 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P++ GN EY RQ E+ERLF +YGR++RVDMKSG+AF+Y ED+RDA DAIRGLDN FG
Sbjct: 2 KPLYCGNIEYAVRQIEIERLFGRYGRVDRVDMKSGYAFIYMEDERDAEDAIRGLDNTDFG 61
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRRL+VEW + +RG R DG +S A PTKTLFVINFDP T+ RD++RHFEPYG
Sbjct: 62 RQRRRLTVEWTKHADRGFRRFEDGRRSDAGLNPTKTLFVINFDPYSTKVRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAFVQ+E+QE+ATKALEST SK++DRVI+VEYA +DS+R Y SP +
Sbjct: 122 KLIYVRIRRNFAFVQYESQEDATKALESTHMSKMLDRVITVEYAQGEDSDRRGGYSSPIQ 181
Query: 180 G-GYGRHSPY---GRSPSPAYRRRP---SPDYGRGRSPAYDRYN-----------GPVYD 221
YG+ + RS SP Y RRP SPDYGR RSP Y R + P+Y
Sbjct: 182 SRRYGKAADVRDRDRSASPRYGRRPVRGSPDYGRARSPIYARSSERHSHDYGRAPSPIYA 241
Query: 222 ---QRRSPDHGRHRSPVPVY-DRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
+R S D+GR SPV V RR PDYGR SP RYRSRSPVRR R+
Sbjct: 242 RHPERHSHDYGRAASPVYVSRPRRDIPDYGRVASPVHERYRSRSPVRRLRS 292
>gi|242075010|ref|XP_002447441.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|241938624|gb|EES11769.1| hypothetical protein SORBIDRAFT_06g001100 [Sorghum bicolor]
gi|448878272|gb|AGE46099.1| arginine/serine-rich splicing factor RS28 transcript I [Sorghum
bicolor]
Length = 238
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/234 (65%), Positives = 180/234 (76%), Gaps = 7/234 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL++LF +YGR+ER+DMKSGFAFVYFED+RD DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDQLFYRYGRVERIDMKSGFAFVYFEDERDGNDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RG+R RDG+K AN +PT+TLFVINFDPI TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGDRAARRDGNKPEANTKPTRTLFVINFDPINTRVSDIERHFAPFGNLS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
VRIR+NFAFVQFET EEA KAL++T + L+DRVISVEYA +DDSER DRYDSPRRGG
Sbjct: 122 SVRIRKNFAFVQFETLEEARKALDATHATTLLDRVISVEYAFRDDSERSDRYDSPRRGGG 181
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN-GPVYDQ-RRSPDHGRHRSP 234
SP YR RPSPDYGR SP Y Y+ PV D+ RRSP + R RSP
Sbjct: 182 YGRR----GDSPVYRSRPSPDYGRPASPVYGSYDRSPVRDRYRRSPAY-RSRSP 230
>gi|116780574|gb|ABK21727.1| unknown [Picea sitchensis]
gi|116793253|gb|ABK26673.1| unknown [Picea sitchensis]
Length = 271
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/277 (59%), Positives = 198/277 (71%), Gaps = 18/277 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P++ GN EYE RQSE+ERLF +YGR+ERVDMKSG+AF+Y +D+RDA DAIRGLDN FG
Sbjct: 2 KPLYCGNLEYEARQSEIERLFGRYGRVERVDMKSGYAFIYMDDERDAEDAIRGLDNREFG 61
Query: 63 YDRRRLSVEWARG-ERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRRL VEW + E+G R G +S +P KTLFVINFDP T +D+++HFEPYG
Sbjct: 62 RQRRRLCVEWTKHPEKGFRRPEGGRRSTMYIKPAKTLFVINFDPADTGVKDLEKHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-R 178
VL+VRIRRNFAFVQFE+QEEATKAL STD+SK++D +ISVEYA +DD +R SP R
Sbjct: 122 KVLNVRIRRNFAFVQFESQEEATKALHSTDKSKVLDSIISVEYAQRDDGDRRGGRSSPVR 181
Query: 179 RGGYGRHSP-YGRSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 234
RG YGR + RS SP Y RR SPDYGR SP Y R + +R SPD+GR S
Sbjct: 182 RGSYGRSAEGRDRSESPIYSRRALRDSPDYGRAPSPIYARRS-----ERSSPDYGRAAS- 235
Query: 235 VPVYDRRR---SPDYGRNRSPNFGRYRSRSPVRRSRT 268
P+Y RR SPDYGR SP RYRSRSPV RSR+
Sbjct: 236 -PIYARRLQRDSPDYGRVLSPVHERYRSRSPVMRSRS 271
>gi|116786163|gb|ABK24003.1| unknown [Picea sitchensis]
Length = 289
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 193/293 (65%), Gaps = 35/293 (11%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P++ GN EYE RQSE+ERLF KYGR+ERVDMKSG+AFVY ED+RDA DAIR LD FG
Sbjct: 2 KPLYCGNIEYEVRQSEIERLFGKYGRVERVDMKSGYAFVYMEDERDAEDAIRALDKTEFG 61
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRRL+VEW + ERG R DG +S+ +PTKTLFVINFDP TR RD++RHFEPYG
Sbjct: 62 RQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRARDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VL+VRIRRNFAF+ + TQEEATKA ++T S L+DRVI+VEYA ++D R SP R
Sbjct: 122 KVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQREDGNRRGGPSSPIR 181
Query: 180 GG-YGRHSP----------------------YGRSPSPAYRRRP---SPDYGRGRSPAYD 213
GG YGR S YGR+PSP Y RRP SPDYGR SP Y
Sbjct: 182 GGRYGRSSEDHGRDRSASPIYGRRAMRGSPDYGRAPSPTYARRPERCSPDYGRATSPIYS 241
Query: 214 RYNGPVYDQRRSPDHGRHRSPV-PVYDRRRSPDYGRNRSPNFGRYRSRSPVRR 265
R ++ D+GR SPV ++ S DYGR+ SP R RSRSPVRR
Sbjct: 242 R-----RPEKHGSDYGRAASPVYASRPQKNSLDYGRDASPLLERDRSRSPVRR 289
>gi|47680295|gb|AAT37131.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|47680367|gb|AAT37122.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|195634831|gb|ACG36884.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 240
Score = 277 bits (708), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 159/251 (63%), Positives = 183/251 (72%), Gaps = 21/251 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+ LF +YGR+ER+DMKSGFAFVYFED+RD +DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDHLFYRYGRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RG+R RDG+K N +PTKTLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGDRAARRDGNKPEVNTKPTKTLFVINFDPMDTRVSDIERHFAPFGNIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +DD ER DRYDSPRRGG
Sbjct: 122 SVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFRDDDERSDRYDSPRRGGG 181
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDR-R 241
SPAYR RPSPDYGR SP Y Y GR RS PV DR R
Sbjct: 182 YGRR----GDSPAYRSRPSPDYGRPASPVYGSY-------------GRSRS--PVRDRYR 222
Query: 242 RSPDYGRNRSP 252
RSP Y R+RSP
Sbjct: 223 RSPAY-RSRSP 232
>gi|224035701|gb|ACN36926.1| unknown [Zea mays]
gi|414588139|tpg|DAA38710.1| TPA: arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/235 (64%), Positives = 179/235 (76%), Gaps = 8/235 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG+AFVYFED+RD DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RGE+ RDG+K AN +PT+TLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFTPFGNIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA +DDSE DRY SPRRGG
Sbjct: 122 SVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGSPRRGGG 181
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN--GPVYDQ-RRSPDHGRHRSP 234
SP YR RPSPDYGR SP Y Y+ GPV D+ RRSP + R RSP
Sbjct: 182 YGRR----GDSPVYRSRPSPDYGRPASPVYGSYDGPGPVRDRYRRSPAY-RSRSP 231
>gi|47680305|gb|AAT37136.1| arginine/serine-rich splicing factor 2 [Zea mays]
gi|47680373|gb|AAT37127.1| arginine/serine-rich splicing factor 2 [Zea mays]
Length = 239
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/234 (63%), Positives = 175/234 (74%), Gaps = 6/234 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG+AFVYFED+RD DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RGE+ RDG+K AN +PT+TLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFTPFGNIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA +DDSE DRY SPRRGG
Sbjct: 122 SVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGSPRRGGG 181
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN--GPVYDQRRSPDHGRHRSP 234
SP YR RPSPDYGR SP Y Y+ GPV D+ R R RSP
Sbjct: 182 YGRR----GDSPVYRSRPSPDYGRPASPVYGSYDGPGPVRDRYRRSLAYRSRSP 231
>gi|42571257|ref|NP_973702.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330255635|gb|AEC10729.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 224
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 152/240 (63%), Positives = 184/240 (76%), Gaps = 25/240 (10%)
Query: 32 VDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR---GERGRHRDGSKSMA 88
+ + +G+AFVYFED+RDA DAIR DN FGY RR+LSVEWA+ GERG+ RDG K+++
Sbjct: 5 LHIDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVS 63
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 148
NQRPTKTLFVINFDPIRTRERD++RHFEPYG VL+VR+RRNFAFVQF TQE+ATKAL+ST
Sbjct: 64 NQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDST 123
Query: 149 DRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGR 208
SKL+D+V+SVEYAL++ ER+DRY RR RSPSP YRRRPSPDY R R
Sbjct: 124 HNSKLLDKVVSVEYALREAGEREDRYAGSRR---------RRSPSPVYRRRPSPDYTRRR 174
Query: 209 SPAYDRYNGPV-YDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
SP YDRY GP Y++R+SPD+G RRS DYGR R+ + G RSRSP++R+R
Sbjct: 175 SPEYDRYKGPAPYERRKSPDYG-----------RRSSDYGRARARSPGYDRSRSPIQRAR 223
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ TR+ ++ER F YG++ V M+ FAFV F DA A+ N
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 61 FGYDRRRLSVEWARGERGRHRD 82
+ +SVE+A E G D
Sbjct: 128 LL--DKVVSVEYALREAGERED 147
>gi|413917962|gb|AFW57894.1| arginine/serine-rich splicing factor 1 variant 3 [Zea mays]
Length = 223
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 148/233 (63%), Positives = 171/233 (73%), Gaps = 17/233 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+ LF +YGR+ER+DMKSGFAFVYFED+RD +DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDHLFYRYGRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RG+R RDG+K N +PTKTLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGDRAARRDGNKPEVNTKPTKTLFVINFDPMDTRVSDIERHFAPFGNIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGY 182
VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +DD ER DRYDSPRRGG
Sbjct: 122 SVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFRDDDERSDRYDSPRRGGG 181
Query: 183 GRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 235
SPAYR RPSPDYGR SP Y Y GR RSPV
Sbjct: 182 YGRR----GDSPAYRSRPSPDYGRPASPVYGSY-------------GRSRSPV 217
>gi|242037183|ref|XP_002465986.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
gi|241919840|gb|EER92984.1| hypothetical protein SORBIDRAFT_01g049590 [Sorghum bicolor]
Length = 266
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/266 (59%), Positives = 199/266 (74%), Gaps = 21/266 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNF+++TRQ +LERLFSKYG I R+DMK+G+AF+YFED+RDA DAIR LDN+ FG
Sbjct: 2 RPVFCGNFDHDTRQYDLERLFSKYGSISRIDMKTGYAFIYFEDERDAEDAIRRLDNVSFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
YDRR+LSVEW+R + + + +PT+TLFVINFDP+RT+ +DI+RHFEPYG +
Sbjct: 62 YDRRKLSVEWSRQVEPVPKSRDRPTGDVKPTRTLFVINFDPMRTKVQDIERHFEPYGKIA 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL-KDDSERDDRYDSPRRGG 181
++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++DRV++VEYA DDSERDDRY SP+RG
Sbjct: 122 NIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDSERDDRYGSPKRGA 181
Query: 182 YGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
Y R +PY RSPSP YRR SPDY RGR P YDR +G +Y++R PVY
Sbjct: 182 YDRRRGNPYLRSPSPRYRREYSPDYDRRGRYPGYDRRDGAMYERR-----------SPVY 230
Query: 239 DRRRSPDYGRNRSPNFGRY-RSRSPV 263
DR Y R RSP + RY R RSPV
Sbjct: 231 DR-----YNRGRSPVYDRYNRGRSPV 251
>gi|148909122|gb|ABR17662.1| unknown [Picea sitchensis]
Length = 337
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 168/329 (51%), Positives = 209/329 (63%), Gaps = 65/329 (19%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P++ GN EYETRQSE+ERLF KYG+++RVDMKSGFAF+Y ED++DA DAIRGLD+ FG
Sbjct: 2 KPLYCGNVEYETRQSEIERLFGKYGKVDRVDMKSGFAFIYMEDEQDAEDAIRGLDSTEFG 61
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRRLSVEW + +RG R DG +S+ + +PTKTLFVINFD T+ DI+RHFEPYG
Sbjct: 62 TQRRRLSVEWTKNADRGVRRSEDGRRSVTDLKPTKTLFVINFDSYNTKVEDIERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK-------------- 165
+L+VRIRRNFAFVQ+E QE+ATKALEST SK++D+V++V+YA +
Sbjct: 122 KLLNVRIRRNFAFVQYELQEDATKALESTHLSKMLDKVLTVKYAQREDGDRRGRRSSPIR 181
Query: 166 --------DDSERDDRYDSPRRG--------GYGRHSP-------------YGRSPSPAY 196
+D +R DR SP G YGR S YGR+PSP Y
Sbjct: 182 RGRYSRAGEDHDR-DRSASPLHGRRAVRGSPDYGRASSPIHGRRPERRSPDYGRAPSPIY 240
Query: 197 RRRP---SPDYGRG-----------RSPAYDRYNGPVYD---QRRSPDHGRHRSPVPVYD 239
RRP SPDYGR RSP Y R P+Y +RRSPD+GR SPV
Sbjct: 241 ARRPERRSPDYGRAPSPIYAKRPERRSPDYGRAPSPIYAKRPERRSPDYGRAASPVYASR 300
Query: 240 RRR-SPDYGRNRSPNFGRYRSRSPVRRSR 267
R++ SPDYGR SP + RSRSP+R+SR
Sbjct: 301 RQKNSPDYGRVASPVHEQDRSRSPMRQSR 329
>gi|357165299|ref|XP_003580336.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 261
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/253 (63%), Positives = 186/253 (73%), Gaps = 20/253 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGRIER+DMKSGFAFVYFED+RD DAIR LD +PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRIERIDMKSGFAFVYFEDERDGDDAIRALDGVPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDG----SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RR+LSVEW+RG+RG RD SK N +PTKTLFVINFDPI TR DI+RHF+P+
Sbjct: 62 PGRRKLSVEWSRGDRGTRRDDRDGYSKPPVNTKPTKTLFVINFDPINTRVSDIERHFDPF 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G + +VRIR+NFAFVQFETQEEATKAL++T +KL+DRVISVEYA +DDSE DRYD P
Sbjct: 122 GKISNVRIRKNFAFVQFETQEEATKALDATHSTKLLDRVISVEYAFRDDSEPGDRYDRPI 181
Query: 179 RGGYGRH-------SPYGRSPSPAYRR-RPSPDYGRGRSPA--------YDRYNGPVYDQ 222
RGG G S Y RS SP YRR RPSPDYGR RSPA YDR PV D+
Sbjct: 182 RGGGGGGGYGRQDDSSYRRSVSPVYRRSRPSPDYGRPRSPAELSPVYGSYDRSRSPVRDR 241
Query: 223 RRSPDHGRHRSPV 235
R R RSP+
Sbjct: 242 YRGRSPLRSRSPL 254
>gi|41323931|gb|AAS00039.1| splicing factor-like protein [Vitis riparia]
Length = 478
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 187/260 (71%), Gaps = 13/260 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNF+Y+ RQS+LERLF +YG+++RVDMK+GFAF+Y ED+RDA DAIRGLD FG
Sbjct: 2 RPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGFG 61
Query: 63 YDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG R +S N RP KTLFVINFDP TR RD++RHF+PYG
Sbjct: 62 RKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDPYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY--DSPR 178
+L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL+DRVISVEYA++DD ER + Y D R
Sbjct: 122 ILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRR 181
Query: 179 RGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP-AYDRYNGPVYDQRRSPDHGRHRSPVP 236
R S GRS SP R R SPDYGRG SP AY R +R SPD+GR SP P
Sbjct: 182 RDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRR-------ERASPDYGRDPSPSP 234
Query: 237 VYDRRRSPDYGRNRSPNFGR 256
R PD+GR+RSP+ R
Sbjct: 235 RRRDRAMPDHGRSRSPSHHR 254
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 189 GRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
G S SP R PDY RG S + P + SPD+ R SP + R SP+YG
Sbjct: 403 GPSQSPQQGERALPDYARGPS------DSPYQRESISPDYDRGPSPNSKREERDSPNYGG 456
Query: 249 NRSPNFGRYRSRSPVRRSRT 268
+ SP GRYRSRSP R R+
Sbjct: 457 SASPMNGRYRSRSPPARERS 476
>gi|147863191|emb|CAN82624.1| hypothetical protein VITISV_021436 [Vitis vinifera]
Length = 479
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 187/260 (71%), Gaps = 13/260 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNF+Y+ RQS+LERLF +YG+++RVDMK+GFAF+Y ED+RDA DAIRGLD FG
Sbjct: 2 RPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGFG 61
Query: 63 YDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG R +S N RP KTLFVINFDP TR RD++RHF+PYG
Sbjct: 62 RKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDPYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY--DSPR 178
+L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL+DRVISVEYA++DD ER + Y D R
Sbjct: 122 ILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRR 181
Query: 179 RGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP-AYDRYNGPVYDQRRSPDHGRHRSPVP 236
R S GRS SP R R SPDYGRG SP AY R +R SPD+GR SP P
Sbjct: 182 RDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRR-------ERASPDYGRDPSPSP 234
Query: 237 VYDRRRSPDYGRNRSPNFGR 256
R PD+GR+RSP+ R
Sbjct: 235 RRRDRAIPDHGRSRSPSHHR 254
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 176 SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 235
SP+R Y R G S SP R PDY RG S + P + SPD+ R SP
Sbjct: 395 SPQRREYDR----GPSQSPQQGERALPDYSRGPS------DSPYQRESISPDYDRGPSPN 444
Query: 236 PVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
+ R SP+YG + SP GRYRSRSP R R+
Sbjct: 445 SKREERDSPNYGGSASPMNGRYRSRSPPARERS 477
>gi|359490360|ref|XP_002279907.2| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 480
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 187/260 (71%), Gaps = 13/260 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNF+Y+ RQS+LERLF +YG+++RVDMK+GFAF+Y ED+RDA DAIRGLD FG
Sbjct: 4 RPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRTGFG 63
Query: 63 YDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG R +S N RP KTLFVINFDP TR RD++RHF+PYG
Sbjct: 64 RKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDPYGK 123
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY--DSPR 178
+L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL+DRVISVEYA++DD ER + Y D R
Sbjct: 124 ILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRR 183
Query: 179 RGGYGRHS-PYGRSPSPAYRRRPSPDYGRGRSP-AYDRYNGPVYDQRRSPDHGRHRSPVP 236
R S GRS SP R R SPDYGRG SP AY R +R SPD+GR SP P
Sbjct: 184 RDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRR-------ERASPDYGRDPSPSP 236
Query: 237 VYDRRRSPDYGRNRSPNFGR 256
R PD+GR+RSP+ R
Sbjct: 237 RRRDRAIPDHGRSRSPSHHR 256
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 189 GRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR 248
G S SP R PDY RG S + P + SPD+ R SP + R SP+YG
Sbjct: 405 GPSQSPQQGERALPDYSRGPS------DSPYQRESISPDYDRGPSPNSKREERDSPNYGG 458
Query: 249 NRSPNFGRYRSRSPVRRSRT 268
+ SP GRYRSRSP R R+
Sbjct: 459 SASPMNGRYRSRSPPARERS 478
>gi|217071698|gb|ACJ84209.1| unknown [Medicago truncatula]
Length = 294
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/291 (53%), Positives = 194/291 (66%), Gaps = 25/291 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GN +++ RQS++ERLF KYG+I+RVD+KSGFAF+Y E +RDA AIR LD FG
Sbjct: 2 KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEGERDAEYAIRRLDQTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS---KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR+ VEW + ER R G KS N +P+KTLF+INFDP+ TR RD++RHF+PYG
Sbjct: 62 RKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+ ++RIRRNFAF+QFETQEEATKALE+T+ SK +DRVI+VEYA++DD + D Y RR
Sbjct: 122 KISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDRR 181
Query: 180 ------GGYGRHSP-----YGRSPSPAYRRRPSPDYGRGRSPAYDRYNG--PVYDQRRSP 226
G YGR SP GRSPSP R R SPDYGRG +PA G P Y++ SP
Sbjct: 182 GRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPGGSPKYERAESP 241
Query: 227 DHGRH--RSPVPVY-------DRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
+GR+ RSP P + R SP Y R SP RY SRSP R R+
Sbjct: 242 ANGRYDSRSPPPRGSNPPSRPEARGSPKYERAESPMNRRYDSRSPPPRDRS 292
>gi|195628072|gb|ACG35866.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 255
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/252 (58%), Positives = 189/252 (75%), Gaps = 9/252 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNF+++TRQ +LERLFSKYG I R+DMK G+AF+YFED+RDA DAIR LDN+ FG
Sbjct: 2 RPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y+RRRLSVEW+R + + + +PT+TLFVINFDPIRT+ +DI++HFEPYG +
Sbjct: 62 YNRRRLSVEWSRQVEPVPKSRDRPTGDVKPTRTLFVINFDPIRTKVQDIEKHFEPYGKIA 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDS-PRRGG 181
++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++DRV++VEYA +DD D P++G
Sbjct: 122 NIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRYDIPKQGA 181
Query: 182 YGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPAYDRYNGPVYDQRRSPDHGRH---RSPV 235
Y R SPY RSPSP YRR PDYG RGR P Y R +G +Y +RRSP + R+ RSP
Sbjct: 182 YDRRGGSPYMRSPSPRYRRDYGPDYGRRGRYPGYGRRDGAMY-ERRSPVYDRYGGGRSPA 240
Query: 236 -PVYDRRRSPDY 246
YDRRRSP Y
Sbjct: 241 YDRYDRRRSPGY 252
>gi|212722812|ref|NP_001131484.1| uncharacterized protein LOC100192821 [Zea mays]
gi|194691660|gb|ACF79914.1| unknown [Zea mays]
gi|224032781|gb|ACN35466.1| unknown [Zea mays]
gi|413957159|gb|AFW89808.1| arginine/serine-rich splicing factor RSP41 isoform 1 [Zea mays]
gi|413957160|gb|AFW89809.1| arginine/serine-rich splicing factor RSP41 isoform 2 [Zea mays]
gi|413957161|gb|AFW89810.1| arginine/serine-rich splicing factor RSP41 isoform 3 [Zea mays]
Length = 255
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/252 (58%), Positives = 189/252 (75%), Gaps = 9/252 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNF+++TRQ +LERLFSKYG I R+DMK G+AF+YFED+RDA DAIR LDN+ FG
Sbjct: 2 RPVFCGNFDHDTRQYDLERLFSKYGPISRIDMKLGYAFIYFEDERDAEDAIRRLDNVSFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y+RRRLSVEW+R + + + +PT+TLFVINFDPIRT+ +DI++HFEPYG +
Sbjct: 62 YNRRRLSVEWSRQVEPVPKSRDRPTGDVKPTRTLFVINFDPIRTKVQDIEKHFEPYGKIA 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDS-PRRGG 181
++RIRRNFAFVQ+ETQEEA+ A+++TD+S ++DRV++VEYA +DD D P++G
Sbjct: 122 NIRIRRNFAFVQYETQEEASAAVKNTDKSTILDRVVTVEYAFRDDDGDRDDRYDIPKQGA 181
Query: 182 YGRH--SPYGRSPSPAYRRRPSPDYG-RGRSPAYDRYNGPVYDQRRSPDHGRH---RSPV 235
Y R SPY RSPSP YRR PDYG RGR P Y R +G +Y +RRSP + R+ RSP
Sbjct: 182 YDRRGGSPYMRSPSPRYRRDYVPDYGRRGRYPGYGRRDGAMY-ERRSPVYDRYGGGRSPA 240
Query: 236 -PVYDRRRSPDY 246
YDRRRSP Y
Sbjct: 241 YDRYDRRRSPGY 252
>gi|388513547|gb|AFK44835.1| unknown [Medicago truncatula]
Length = 294
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/291 (53%), Positives = 194/291 (66%), Gaps = 25/291 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GN +++ RQS++ERLF KYG+I+RVD+KSGFAF+Y ED+RDA AIR LD FG
Sbjct: 2 KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS---KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR+ V W + ER R G KS N +P+KTLF+INFDP+ TR RD++RHF+PYG
Sbjct: 62 RKGRRIRVGWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+ ++RIRRNFAF+QFETQEEATKALE+T+ SK +DRVI+VEYA++DD + D Y RR
Sbjct: 122 KISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDRR 181
Query: 180 ------GGYGRHSP-----YGRSPSPAYRRRPSPDYGRGRSPAY--DRYNGPVYDQRRSP 226
G YGR SP GRSPSP R R SPDYGRG +PA + P Y++ SP
Sbjct: 182 GRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESP 241
Query: 227 DHGRH--RSPVPVY-------DRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
+GR+ RSP P + R SP Y R SP RY SRSP R R+
Sbjct: 242 ANGRYDSRSPPPRGSNPPSRPEARGSPKYERAESPMNRRYDSRSPPPRDRS 292
>gi|224136870|ref|XP_002322436.1| predicted protein [Populus trichocarpa]
gi|222869432|gb|EEF06563.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 163/287 (56%), Positives = 192/287 (66%), Gaps = 31/287 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNFEY+ RQ+ELERLF +YGR+ERVDMKSGFAF+Y ED+RDA DAIRGLD + FG
Sbjct: 2 RPIFCGNFEYDARQTELERLFKRYGRVERVDMKSGFAFIYMEDERDAEDAIRGLDRVEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKS--MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG R G S N RP+KTLFVINFDP TR +D++RHFEPYG
Sbjct: 62 RKGRRLRVEWTKQERGIRRPGGTSRRSTNTRPSKTLFVINFDPHHTRTKDLERHFEPYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
++ VRIRRNFAFVQ+E QE+ATKAL++T+ SKL+DRVISVEYA++DD ER D Y R
Sbjct: 122 IVSVRIRRNFAFVQYEAQEDATKALDATNLSKLLDRVISVEYAVRDDDERKDGYSPDRSR 181
Query: 181 GYG------------------RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYD 221
R SP YGR PSP + R SPDYGR RSP+ R +
Sbjct: 182 DRSPDRRGHDRRRSPSPYRRERGSPDYGRGPSPYRKERGSPDYGRRRSPSPYRRD----- 236
Query: 222 QRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
R SPD+GR S P Y R R+ G+ SP GR SRSP RR R+
Sbjct: 237 -RASPDYGRGTSRSP-YRRERA---GKRISPENGRGPSRSPYRRERS 278
>gi|357145457|ref|XP_003573649.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like
[Brachypodium distachyon]
Length = 277
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 189/285 (66%), Gaps = 30/285 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GN +Y+ RQSE+ERLFSKYGR+ERVD+K+GFAFVY ED+RDA DAI LD FG
Sbjct: 2 RPIFCGNLDYDARQSEIERLFSKYGRVERVDIKTGFAFVYMEDERDAEDAIHRLDRTDFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + +R R G+ +S + +PTKTLFVINFDPI TR RD+++HF+ YG
Sbjct: 62 RKGRRLRVEWTKEDRSGGRKGNPKRSPTSVKPTKTLFVINFDPISTRTRDLEKHFDQYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ ++RIRRNFAFVQ+E+QE+ATKAL+ T+ S L+DRVISVEYAL+DD E+ + Y RRG
Sbjct: 122 IANIRIRRNFAFVQYESQEDATKALDGTNGSTLMDRVISVEYALRDDDEKRNGYSPERRG 181
Query: 181 GYGRH-----------SPYGRSPSPAYRRRPSPDYGRGR---SPAYDRYNGPVYDQRRSP 226
G R SPYGR R R SPDYGRGR SP Y + R SP
Sbjct: 182 GRDRSPDRRDNRGRSGSPYGRG-----RERGSPDYGRGRERGSPDYGKGGA-----RGSP 231
Query: 227 DHGRHRSP-VPVYDRRRSPDYGRNR---SPNFGRYRSRSPVRRSR 267
D+ R SP D RRSP Y R R SP + R RSRSP R R
Sbjct: 232 DYVRGGSPYAGKGDERRSPKYDRERREASPGYDRPRSRSPAREDR 276
>gi|449463727|ref|XP_004149583.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 376
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/275 (56%), Positives = 182/275 (66%), Gaps = 27/275 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GNFEY+ RQ +LERLFS+YG+++RVDMKSGFAF+Y ED+RDA DAIR LD FG
Sbjct: 2 KPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS----------------KSMANQRPTKTLFVINFDPIRT 106
RRL VEW + ERG R G +S N RP+KTLFVINFDP T
Sbjct: 62 RKGRRLRVEWTKQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHT 121
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
R RD++RHF+PYG +L VRIRRNFAFVQ+E QE+AT+ALE T+ SKL+DRVISVEYA++D
Sbjct: 122 RTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRD 181
Query: 167 DSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSP 226
D ++ + Y SP R RS SP R R SPDYG G S P QR SP
Sbjct: 182 DDDKRNGY-SPDRNRDRSPDRKRRSSSPYRRERGSPDYGNGIS------RSPYRRQRASP 234
Query: 227 DHGRHRSPVPVYDRRR---SPDYGRNRSPNFGRYR 258
D+G RSP P Y R R SPDYGR RSPN YR
Sbjct: 235 DYGSRRSPSP-YQRERERGSPDYGRGRSPNHSPYR 268
>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
Length = 603
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 187/287 (65%), Gaps = 32/287 (11%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ RQSE+ERLFSKYGR+ERVDMKSGFAFVY ED+RDA +AI LD I FG
Sbjct: 326 RPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFG 385
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + +R GR + +S N RPTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 386 RKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLFVINFDPINTRTRDLERHFDQYGK 445
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ +VRIRRNFAFVQ+E QE+ATKALE T+ S L+DRVISVEYAL+DD E+ + Y RRG
Sbjct: 446 ISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYSPERRG 505
Query: 181 --------GY-GRH-SPYGRSPSPAYRRRPSPDYGRGR---SPAYDRY---NGPVYDQRR 224
Y GR SPYGR R R SPDYGRGR SP Y R P Y +
Sbjct: 506 RDRSPDRRDYRGRSASPYGRG-----RERGSPDYGRGRERGSPDYGRGGDRGSPDYHRGA 560
Query: 225 SPDHGRH----RSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
SP G SP YDR R R SP + R RSRSP R R
Sbjct: 561 SPQGGNKGDERGSPPNNYDRER-----REASPGYDRPRSRSPARYER 602
>gi|414588138|tpg|DAA38709.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 211
Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 148/179 (82%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG+AFVYFED+RD DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+RGE+ RDG+K AN +PT+TLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSRGEQAGRRDGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFTPFGNIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA +DDSE DRY SPRRGG
Sbjct: 122 SVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGSPRRGG 180
>gi|115443899|ref|NP_001045729.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|41053015|dbj|BAD07946.1| putative arginine/serine-rich splicing factor RSp41 [Oryza sativa
Japonica Group]
gi|113535260|dbj|BAF07643.1| Os02g0122800 [Oryza sativa Japonica Group]
gi|215768223|dbj|BAH00452.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 279
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/282 (56%), Positives = 185/282 (65%), Gaps = 22/282 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ RQSE+ERLFSKYGR+ERVDMKSGFAFVY ED+RDA +AI LD I FG
Sbjct: 2 RPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFG 61
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + +R GR + +S N RPTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLFVINFDPINTRTRDLERHFDQYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ +VRIRRNFAFVQ+E QE+ATKALE T+ S L+DRVISVEYAL+DD E+ + Y RRG
Sbjct: 122 ISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYSPERRG 181
Query: 181 ---GYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRY---NGPVYDQRRSPDHG 229
R GRS SP R R SPDYGRGR SP Y R P Y + SP G
Sbjct: 182 RDRSPDRRDYRGRSASPYGRGRERGSPDYGRGRERGSPDYGRGGDRGSPDYHRGASPQGG 241
Query: 230 RH----RSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
SP YDR R R SP + R RSRSP R R
Sbjct: 242 NKGDERGSPPNNYDRER-----REASPGYDRPRSRSPARYER 278
>gi|222622077|gb|EEE56209.1| hypothetical protein OsJ_05182 [Oryza sativa Japonica Group]
Length = 290
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/282 (56%), Positives = 185/282 (65%), Gaps = 22/282 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ RQSE+ERLFSKYGR+ERVDMKSGFAFVY ED+RDA +AI LD I FG
Sbjct: 13 RPVFCGNLDYDARQSEIERLFSKYGRVERVDMKSGFAFVYMEDERDADEAIHRLDRIEFG 72
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + +R GR + +S N RPTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 73 RKGRRLRVEWTKEDRSGGRRGNSKRSPNNTRPTKTLFVINFDPINTRTRDLERHFDQYGK 132
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ +VRIRRNFAFVQ+E QE+ATKALE T+ S L+DRVISVEYAL+DD E+ + Y RRG
Sbjct: 133 ISNVRIRRNFAFVQYELQEDATKALEGTNGSTLMDRVISVEYALRDDDEKRNGYSPERRG 192
Query: 181 ---GYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRY---NGPVYDQRRSPDHG 229
R GRS SP R R SPDYGRGR SP Y R P Y + SP G
Sbjct: 193 RDRSPDRRDYRGRSASPYGRGRERGSPDYGRGRERGSPDYGRGGDRGSPDYHRGASPQGG 252
Query: 230 RH----RSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
SP YDR R R SP + R RSRSP R R
Sbjct: 253 NKGDERGSPPNNYDRER-----REASPGYDRPRSRSPARYER 289
>gi|357114378|ref|XP_003558977.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 286
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/291 (50%), Positives = 188/291 (64%), Gaps = 52/291 (17%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNF+Y+TRQ++LERLFSK+GRI R+DMKSG+AF+YFED+RDA DAI+ L N FG
Sbjct: 2 RPVFCGNFDYDTRQADLERLFSKHGRIARIDMKSGYAFIYFEDERDAEDAIKRLANADFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y+RRRLSVEW+R ++ + + +PT+TLFVINFDP+RT+ +DI+RHFEPYG +
Sbjct: 62 YNRRRLSVEWSRQVEPVPKNRDRPTGDAKPTRTLFVINFDPLRTKIQDIERHFEPYGKIS 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER-----------D 171
++RIR+NFAFV++ETQEEA+ A++ TD+S ++DRV++VEYA +DD D
Sbjct: 122 NIRIRKNFAFVRYETQEEASVAVKHTDKSSILDRVLTVEYAFRDDDNERDDRYSSPKRGD 181
Query: 172 DRYDSPRRG--------------------------------GYGRHSPYGRSPSPAYRRR 199
DRY SPRRG G R SPY RSPSP YRR
Sbjct: 182 DRYSSPRRGDDRYVSTRRGDDRYVSPRRGDNRYGSPKRAERGRARGSPYMRSPSPRYRRD 241
Query: 200 PSPDYG-RGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV-YDRRRSPDYGR 248
SPDY R R+ YDR R +GR RSPV YDR RSP YGR
Sbjct: 242 YSPDYDRRPRNAGYDR-------PREGAPYGRSRSPVYARYDRGRSPGYGR 285
>gi|449463729|ref|XP_004149584.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
gi|449528505|ref|XP_004171244.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Cucumis
sativus]
Length = 367
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 178/269 (66%), Gaps = 21/269 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GNFEY+ RQ +LERLFS+YG+++RVDMKSGFAF+Y ED+R+A DAI LD FG
Sbjct: 2 KPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIHALDRREFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSM----------ANQRPTKTLFVINFDPIRTRERDIK 112
RRL VEW + ERG R N RP+KTLFVINFDP TR RD++
Sbjct: 62 RKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDLE 121
Query: 113 RHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
RHF+PYG +L+VRIRRNFAFVQ+E QE+AT+ALE T+ SKL+DRVISVEYA++DD E+ +
Sbjct: 122 RHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKRN 181
Query: 173 RYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHR 232
Y SP R RSPSP R R SPDYG G S P QR SPD+G R
Sbjct: 182 GY-SPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGIS------RSPYRRQRASPDYGSRR 234
Query: 233 SPVPVYDRRR---SPDYGRNRSPNFGRYR 258
SP P Y R R SPDY R RSP YR
Sbjct: 235 SPSP-YQRERERGSPDYSRGRSPKHSPYR 262
>gi|1667582|gb|AAB18813.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 350
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 146/274 (53%), Positives = 183/274 (66%), Gaps = 14/274 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYGR+ERVDMK+GFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGRVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFVINFDPIRTRERDIKRHFEPY 118
R L VEW + ERG + RP+KTLFVINFD TR RD+++HFEPY
Sbjct: 62 RRGRTLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPY 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VISVEYA+KDD R + + SP
Sbjct: 122 GKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH-SPE 180
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R RSP+P R R SPDYGRG SP +R SPD+GR RSP P
Sbjct: 181 RRRDRSPERRRRSPTPYKRERGSPDYGRGASPV-----AAYRKERTSPDYGRRRSPSPYK 235
Query: 239 DRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
RR SP+YGR+R N R R SP + SR+
Sbjct: 236 KSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 269
>gi|224120150|ref|XP_002318257.1| predicted protein [Populus trichocarpa]
gi|222858930|gb|EEE96477.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 179/271 (66%), Gaps = 21/271 (7%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R IF GNFEY+ RQ+ELERLF +YGR+ERVDMK+GFAF+Y ED+RDA DAIRGLD + FG
Sbjct: 2 RSIFCGNFEYDARQTELERLFKRYGRVERVDMKAGFAFIYMEDERDAEDAIRGLDRVEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDG--SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG + G S+ AN RP+KTLFVINFDP TR +D++RHFEPYG
Sbjct: 62 RKGRRLHVEWTKQERGARQPGGSSRKSANTRPSKTLFVINFDPHHTRTKDLERHFEPYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
++ VRIRRNFAFVQ+E QE+ATKAL++T+ SKL+ RVISVEYA +DD ER D + R
Sbjct: 122 IVSVRIRRNFAFVQYEAQEDATKALDATNMSKLLYRVISVEYAARDDGERKDGHSPDRSR 181
Query: 181 GYGRHSP---YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 237
RSPSP R R S DYG G S P +R SPD G RSP P
Sbjct: 182 DRSPDRRGHDRRRSPSPYRRERGSTDYGHGPS--------PYRKERVSPDSGCRRSPSPY 233
Query: 238 YDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
R SPDYGR +RSP RR R
Sbjct: 234 RRDRASPDYGRG--------STRSPSRRERA 256
>gi|162457883|ref|NP_001105264.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680309|gb|AAT37138.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
gi|47680375|gb|AAT37129.1| arginine/serine-rich splicing factor 2 variant 2 [Zea mays]
Length = 193
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/197 (65%), Positives = 154/197 (78%), Gaps = 9/197 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG+AFVYFED+RD DAIR LD PFG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGYAFVYFEDERDGNDAIRALDGYPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRLSVEW+R DG+K AN +PT+TLFVINFDP+ TR DI+RHF P+GN+
Sbjct: 62 PGRRRLSVEWSR-------DGNKPEANTKPTRTLFVINFDPMNTRVSDIERHFTPFGNIS 114
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR-GG 181
VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA +DDSE DRY SPRR GG
Sbjct: 115 SVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYAFRDDSEVSDRYGSPRRGGG 174
Query: 182 YGRHSPYGRSPSPAYRR 198
YG + RSP PA RR
Sbjct: 175 YGSLAYRSRSP-PAKRR 190
>gi|113205286|gb|ABI34327.1| Arginine/serine-rich splicing factor RSP41, putative [Solanum
demissum]
Length = 373
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/261 (56%), Positives = 185/261 (70%), Gaps = 9/261 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GN EY RQSELERLF +YG+++RVDMKSGFAFVY +D+RDA DAIRGLD I FG
Sbjct: 23 RPIFCGNVEYNARQSELERLFRRYGKVDRVDMKSGFAFVYMDDERDAEDAIRGLDRIEFG 82
Query: 63 YDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL +EW++ ER R KS ++ +P+KTLFVINFDP TR R+I+RHF+PYG
Sbjct: 83 RKGRRLRIEWSKEERNGRRPETSRKSSSSVKPSKTLFVINFDPYSTRSRNIERHFDPYGK 142
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+L++RIRRNFAFVQ+ETQE+AT+AL++T+ SKL+D+VI+VEYA KDD +R + + R
Sbjct: 143 ILNIRIRRNFAFVQYETQEDATRALDATNMSKLMDQVITVEYANKDDDDRRNGFSPDRNH 202
Query: 181 GYGRHSPY--GRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
G Y GRS SP R R SPDYGRGR+ R P+ R SPD+GR S P +
Sbjct: 203 DRGLKRGYDRGRSRSPYGRERGSPDYGRGRA----RSPSPIRQGRSSPDYGRRPSSNPNH 258
Query: 239 DRRRSPDYGRNRSPNFGRYRS 259
R R +YG RSPN + R+
Sbjct: 259 -RERDSEYGSGRSPNIRKERN 278
>gi|326509639|dbj|BAJ87035.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 190/287 (66%), Gaps = 50/287 (17%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNF+YETRQS+LERLFSKYG I R+D+KSG+AFVYF+D+RDA DAIR L N FG
Sbjct: 2 RPVFCGNFDYETRQSDLERLFSKYGPIRRIDIKSGYAFVYFQDERDAEDAIRRLSNAEFG 61
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+ RRRLSVEW+R E ++RD + A+ +PT+TLFVINFDP+RT+ DI+RHF+PYG
Sbjct: 62 HSRRRLSVEWSRQEEPVPKNRD-RPTGADAKPTRTLFVINFDPVRTKVVDIERHFQPYGK 120
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE----------- 169
+ ++RIR+NFAFVQ+E QE+A+ A+ TD+S ++DRV++VEYA +DD
Sbjct: 121 IANIRIRKNFAFVQYEMQEDASVAVNKTDKSTILDRVVTVEYAFRDDDNERDDRHGSPRQ 180
Query: 170 -RD---------DRYDSPRRGG--YGRHS-------PYGRSPSPAYRRRPSPDYGRGRSP 210
RD DRY SPRRGG YG PY RSPSP YRR SPDY R P
Sbjct: 181 GRDRYGSPRRGGDRYGSPRRGGDRYGSPKRANQGRRPYERSPSPRYRRDYSPDY--DRRP 238
Query: 211 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRY 257
YDR G Y GR RS PVYDR Y R RSP +GRY
Sbjct: 239 CYDRQYGAPY--------GRSRS--PVYDR-----YERGRSPGYGRY 270
>gi|15235112|ref|NP_194280.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|334186916|ref|NP_001190837.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|4033468|sp|P92965.2|RSP40_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP40
gi|2582641|emb|CAA67800.1| splicing factor [Arabidopsis thaliana]
gi|2980800|emb|CAA18176.1| splicing factor At-SRp40 [Arabidopsis thaliana]
gi|332659667|gb|AEE85067.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659670|gb|AEE85070.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 350
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 184/274 (67%), Gaps = 14/274 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RRL VEW + ERG + RP+KTLFVINFD TR RD+++HFEPY
Sbjct: 62 RKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPY 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VISVEYA+KDD R + + SP
Sbjct: 122 GKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH-SPE 180
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R RSPSP R R SPDYGRG SP +R SPD+GR RSP P
Sbjct: 181 RRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AAYRKERTSPDYGRRRSPSPYK 235
Query: 239 DRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
RR SP+YGR+R N R R SP + SR+
Sbjct: 236 KSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 269
>gi|7269400|emb|CAB81360.1| splicing factor At-SRp40 [Arabidopsis thaliana]
Length = 349
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 184/274 (67%), Gaps = 14/274 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD FG
Sbjct: 1 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 60
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RRL VEW +GERG + RP+KTLFVINFD TR RD+++HFEPY
Sbjct: 61 RKGRRLRVEWTKGERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPY 120
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +++VRIRRNFAF+Q+E QE+AT+AL++++ KL+D+VISVEYA+KDD R + + SP
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDASNNRKLMDKVISVEYAVKDDDARGNGH-SPE 179
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R RSPSP R R SPDYGRG SP +R SPD+GR RSP P
Sbjct: 180 RRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AAYRKERTSPDYGRRRSPSPYK 234
Query: 239 DRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
RR SP+YGR+R N R R SP + SR+
Sbjct: 235 KSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 268
>gi|224063963|ref|XP_002301323.1| predicted protein [Populus trichocarpa]
gi|222843049|gb|EEE80596.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/229 (58%), Positives = 162/229 (70%), Gaps = 13/229 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+ IF GN +Y+ RQS++ERLF +YGRI+RVDMKSGFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSK-SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRL VEW + ER GS+ S AN P+KTLFVINFDPI TR RD++RHF+PYG +
Sbjct: 62 RKGRRLRVEWTKQERDSKPAGSRRSSANMTPSKTLFVINFDPIHTRTRDLERHFDPYGKI 121
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG- 180
L RIRRNFAFVQ+E QE+ATKALE+T+ SKL+DRVISVEYA +DD ER + Y RRG
Sbjct: 122 LSTRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAARDDDERRNGYSPERRGR 181
Query: 181 --GYGRHSPYGRSPSPAYRRRPSPDYGRGRSP---------AYDRYNGP 218
R+ RSPSP R R SPDYG G++ AY++ GP
Sbjct: 182 DRSPDRNYSRERSPSPYRRDRGSPDYGHGQNTNARPQRGNHAYEKAEGP 230
>gi|302809591|ref|XP_002986488.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
gi|300145671|gb|EFJ12345.1| hypothetical protein SELMODRAFT_124209 [Selaginella moellendorffii]
Length = 214
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/209 (61%), Positives = 159/209 (76%), Gaps = 17/209 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNFEY+ RQSE+ER+F+K+G+++RVDMK+GFAFVY ED+RDA DAI+ LDN+ FG
Sbjct: 2 RPVFCGNFEYDARQSEIERMFAKFGKVDRVDMKTGFAFVYMEDERDAEDAIQDLDNVEFG 61
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR L VEWA+ G+ R D +S+ QRPTKTLFV+NFDPI TR RD++RHFEPYG
Sbjct: 62 RQRRPLRVEWAKQGDSAIKRREDARRSITKQRPTKTLFVVNFDPINTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
++ V+IR+NFAFVQ+E+QEEATKALEST SK+VDRVISVEYA +++ D P R
Sbjct: 122 KLVRVQIRKNFAFVQYESQEEATKALESTHLSKVVDRVISVEYAARENG------DPPGR 175
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGR 208
G RSPSP +R R SPDYG GR
Sbjct: 176 G--------RRSPSPRHRSRGSPDYGGGR 196
>gi|302762969|ref|XP_002964906.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
gi|300167139|gb|EFJ33744.1| hypothetical protein SELMODRAFT_82477 [Selaginella moellendorffii]
Length = 214
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/209 (61%), Positives = 159/209 (76%), Gaps = 17/209 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNFEY+ RQSE+ER+F+K+G+++RVDMK+GFAFVY ED+RDA DAI+ LDN+ FG
Sbjct: 2 RPVFCGNFEYDARQSEIERMFAKFGKVDRVDMKTGFAFVYMEDERDAEDAIQDLDNVEFG 61
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR L VEWA+ G+ R D +S+ QRPTKTLFV+NFDPI TR RD++RHFEPYG
Sbjct: 62 RQRRPLRVEWAKQGDSAIKRREDARRSITKQRPTKTLFVVNFDPINTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
++ V+IR+NFAFVQ+E+QEEATKALEST SK+VDRVISVEYA +++ D P R
Sbjct: 122 KLVRVQIRKNFAFVQYESQEEATKALESTHLSKVVDRVISVEYAARENG------DPPGR 175
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGR 208
G RSPSP +R R SPDYG GR
Sbjct: 176 G--------RRSPSPRHRSRGSPDYGGGR 196
>gi|226494041|ref|NP_001147698.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195613160|gb|ACG28410.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|195655913|gb|ACG47424.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 184/284 (64%), Gaps = 26/284 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+GFAFVY ED+RDA DAI LD I FG
Sbjct: 2 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAISRLDGIDFG 61
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RR+ VEW + +R GR +S N +PTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPTKTLFVINFDPINTRIRDLERHFDKYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPR 178
V +VRI++NFAF+QFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R + SP
Sbjct: 122 VANVRIKKNFAFIQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNGYSPD 181
Query: 179 RGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRYNGPVYDQRRSPDHGRHRS 233
R G R RSPSP R R SPDYGR + SP Y R RSPD+GR S
Sbjct: 182 RRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYGRGG-------RSPDNGRGVS 234
Query: 234 PVP------VYDRRRSPDYGRNR----SPNFGRYRSRSPVRRSR 267
P RSPDY R R P + R SRSP R +R
Sbjct: 235 PAGGGRGDHARGGGRSPDYDRQRREASPPGYDRSPSRSPGREAR 278
>gi|194696906|gb|ACF82537.1| unknown [Zea mays]
gi|413935351|gb|AFW69902.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 279
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 184/284 (64%), Gaps = 26/284 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+GFAFVY ED+RDA DAI LD I FG
Sbjct: 2 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAISRLDGIDFG 61
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RR+ VEW + +R GR +S N +PTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPTKTLFVINFDPINTRIRDLERHFDKYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPR 178
V +VRI++NFAF+QFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R + SP
Sbjct: 122 VANVRIKKNFAFIQFEIQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNGYSPD 181
Query: 179 RGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRYNGPVYDQRRSPDHGRHRS 233
R G R RSPSP R R SPDYGR + SP Y R RSPD+GR S
Sbjct: 182 RRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYGRGG-------RSPDNGRGVS 234
Query: 234 PVP------VYDRRRSPDYGRNR----SPNFGRYRSRSPVRRSR 267
P RSPDY R R P + R SRSP R +R
Sbjct: 235 PAGGGRGDHARGGGRSPDYDRQRREASPPGYDRSPSRSPGREAR 278
>gi|168038912|ref|XP_001771943.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676725|gb|EDQ63204.1| predicted protein [Physcomitrella patens subsp. patens]
gi|448878393|gb|AGE46159.1| arginine/serine-rich splicing factor RS27 transcript I
[Physcomitrella patens subsp. patens]
Length = 233
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/256 (53%), Positives = 171/256 (66%), Gaps = 40/256 (15%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP++ GNFEY+ RQSE+ERLF +YGR+ERVDMK+GF+F+Y ED+RDA DAIR LDN+ FG
Sbjct: 6 RPVYCGNFEYDARQSEIERLFKEYGRVERVDMKTGFSFIYMEDERDAEDAIRHLDNMEFG 65
Query: 63 YDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRRLSVEWA+ G R D ++ RP+KTLFV+NFDPI TR RD++RHFEPYG
Sbjct: 66 RQRRRLSVEWAKQGDGAIRRREDARRNNTKLRPSKTLFVVNFDPINTRVRDLERHFEPYG 125
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
++ V+IR+NF FVQ+ETQ+EATKALEST+ SK++DRVI+VEYA ++D E
Sbjct: 126 KLVRVQIRKNFGFVQYETQDEATKALESTNMSKVMDRVITVEYAAREDGE---------- 175
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYD 239
P GRG SP+ RY G R SP +GR RSPV
Sbjct: 176 ---------------------PPSSGRGGSPS--RYRG---SSRGSPSYGRDRSPVRGSG 209
Query: 240 RRRSPDY-GRNRSPNF 254
R RSP GR+RSP++
Sbjct: 210 RNRSPPARGRSRSPDY 225
>gi|297803572|ref|XP_002869670.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
gi|297315506|gb|EFH45929.1| hypothetical protein ARALYDRAFT_492278 [Arabidopsis lyrata subsp.
lyrata]
Length = 348
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 178/257 (69%), Gaps = 13/257 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD I FG
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRIEFG 61
Query: 63 YDRRRLSVEWARGER----GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RRL VEW + ER +S + RP+KTLFVINFD TR RD++RHFEPY
Sbjct: 62 RKGRRLRVEWTKSEREGDRRSGGGSRRSSSGMRPSKTLFVINFDADNTRTRDLERHFEPY 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +L+VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + + SP
Sbjct: 122 GKILNVRIRRNFAFIQYEAQEDATRALDATNNSKLMDKVISVEYAVKDDDARGNGH-SPE 180
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R RSPSP R R SPDYGRG SP R SPD+GR RSP P Y
Sbjct: 181 RRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AAYRKDRTSPDYGRRRSPSP-Y 234
Query: 239 DRRR--SPDYGRNRSPN 253
+ R SP+YGR+R N
Sbjct: 235 KKSRCGSPEYGRDRRGN 251
>gi|356575923|ref|XP_003556085.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Glycine
max]
Length = 376
Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 186/273 (68%), Gaps = 25/273 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNFEY+ RQSELERLF +YG+++RVDMKSGFAF+Y ED+RDA AIR LD + FG
Sbjct: 7 RPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFG 66
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG + S +S AN RP+KTLFVINFD TR RD++RHFEPYG
Sbjct: 67 RKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGK 126
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY--DSPR 178
++ VRIRRNFAFVQ+E++++A++ALE+T+ SKL+DRVISVE+A+KDD +R + Y + R
Sbjct: 127 IVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGR 186
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHG----RHRSP 234
R RSPSP R R SPDYGRG SP Y R +R SPD+G R RS
Sbjct: 187 DRHRDRSRDGRRSPSPYRRERGSPDYGRGPSP-YQR-------ERGSPDYGRDRDRSRSR 238
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
P R SP YGR RS SP RR R
Sbjct: 239 SPPRRERASPAYGR---------RSLSPHRRER 262
>gi|225453750|ref|XP_002273751.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis
vinifera]
Length = 252
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/273 (52%), Positives = 179/273 (65%), Gaps = 31/273 (11%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GN EY+ RQS++ERLF +YG+++RVD+KSGFAFVY +D+RDA DAIR LD FG
Sbjct: 2 KPIFCGNLEYDARQSDVERLFRRYGKVDRVDLKSGFAFVYMDDERDAEDAIRRLDRTVFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
R+L VEW + ERG R G KS AN +P+KTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRQLRVEWTKQERGIRRPGGSRKSSANMKPSKTLFVINFDPIHTRTRDLERHFDLYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+L++RIRRNFAF+QFE+QE+ATKAL++T+ SK +DRVISVEYA +DD + SP R
Sbjct: 122 ILNIRIRRNFAFIQFESQEDATKALDATNMSKFMDRVISVEYAARDDDDDRRNGYSPERR 181
Query: 181 GYG-----RHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV 235
G R GRSPSP +R R SPDYG G + + R P
Sbjct: 182 GRDMSPDRRSHDRGRSPSPYHRDRASPDYGHGANA----------NSRSEP--------- 222
Query: 236 PVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
R SP+Y R+ SP RY SRSP R R+
Sbjct: 223 -----RGSPNYDRDESPVNERYHSRSPPPRERS 250
>gi|357444075|ref|XP_003592315.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
gi|355481363|gb|AES62566.1| Arginine/serine-rich-splicing factor RSP40 [Medicago truncatula]
Length = 430
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/279 (53%), Positives = 182/279 (65%), Gaps = 43/279 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF GNFEY+ R+SELERLF +YG+++RVDMK+GFAF+Y ED+RDA AIR LD I FG
Sbjct: 46 IFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEFGRK 105
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRL VEW + ERG R + S AN RP+KTLFVINFD +TR RD++RHFEPYG +
Sbjct: 106 GRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYGKI 165
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
+ VRIR+NFAFVQ+E++++A KALE+T+ SKL+DRVISVE+A +DD RR G
Sbjct: 166 VSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDD---------RRNG 216
Query: 182 YGRHSP-------------YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDH 228
HSP RSPSP R R SPDYGRG SP Y R +R SPD+
Sbjct: 217 ---HSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSP-YKR-------ERSSPDY 265
Query: 229 GRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
GR S R RSP SP +GR R+ SP RR R
Sbjct: 266 GRGNS------RSRSPHRRERGSPAYGR-RNPSPYRRER 297
>gi|242063870|ref|XP_002453224.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|241933055|gb|EES06200.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|448878270|gb|AGE46098.1| arginine/serine-rich splicing factor RS34 [Sorghum bicolor]
Length = 295
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/259 (55%), Positives = 174/259 (67%), Gaps = 34/259 (13%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+GFAFVY ED+RDA DAI LD I FG
Sbjct: 2 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFVYMEDERDAEDAIHRLDGIDFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RR+ VEW + +R R GS +S RPTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKEDRTAGRRGSSRRSPTQARPTKTLFVINFDPINTRIRDLERHFDKYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V +VRI++NFAFVQFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R +
Sbjct: 122 VANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGNG---- 177
Query: 181 GYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
+SP GR SP RR PSP YGRGR +R SPD+GR +
Sbjct: 178 ----YSPDRRGRERSPGRRRSPSP-YGRGR-------------ERGSPDYGRSKE----- 214
Query: 239 DRRRSPDYGR-NRSPNFGR 256
R SPDYGR RSP+ GR
Sbjct: 215 --RGSPDYGRGGRSPDNGR 231
>gi|388508248|gb|AFK42190.1| unknown [Medicago truncatula]
Length = 388
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 181/279 (64%), Gaps = 43/279 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF GNFEY+ R+SELERLF +YG+++RVDMK+GFAF+Y ED+RDA IR LD I FG
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIEFGRK 63
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRL VEW + ERG R + S AN RP+KTLFVINFD +TR RD++RHFEPYG +
Sbjct: 64 GRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYGKI 123
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
+ VRIR+NFAFVQ+E++++A KALE+T+ SKL+DRVISVE+A +DD RR G
Sbjct: 124 VSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDD---------RRNG 174
Query: 182 YGRHSP-------------YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDH 228
HSP RSPSP R R SPDYGRG SP Y R +R SPD+
Sbjct: 175 ---HSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSP-YKR-------ERSSPDY 223
Query: 229 GRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
GR S R RSP SP +GR R+ SP RR R
Sbjct: 224 GRGNS------RSRSPHRRERGSPAYGR-RNPSPYRRER 255
>gi|300681335|emb|CAZ96065.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 324
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 159/298 (53%), Positives = 190/298 (63%), Gaps = 33/298 (11%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLD 57
RPIF GN +Y+ R SE+ERLF KYGR+ERVD+K+ GFAFVY ED+RDA DAI LD
Sbjct: 26 RPIFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRLD 85
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
I FG RR+ VEW + +R R GS +S N RPTKTLFVINFDPI TR RD++RHF
Sbjct: 86 GIDFGRKGRRIRVEWTKEDRTVGRRGSSRRSPTNARPTKTLFVINFDPINTRIRDLERHF 145
Query: 116 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 175
+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R +
Sbjct: 146 DKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGN 205
Query: 176 --SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRYNGPVYDQR--RSP 226
SP R G R RSPSP R R SPDYGR + SP Y R + R RSP
Sbjct: 206 GYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYGRGGRSPDNGRGGRSP 265
Query: 227 DHGRHRSPVPV----YDR-RRSPDYGRNR------------SPNFGRYRSRSPVRRSR 267
D+GR SP+ +DR RSPDY R SP + R SRSP R R
Sbjct: 266 DNGRGVSPINGSRGDHDRGGRSPDYDREHREASPRRERREASPGYDRSPSRSPGRDER 323
>gi|300681351|emb|CAZ96098.1| arginine/serine-rich splicing factor [Saccharum hybrid cultivar
R570]
Length = 315
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 185/296 (62%), Gaps = 38/296 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLD 57
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+ GFAFVY ED+RDA DAI LD
Sbjct: 26 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRLD 85
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
I FG RR+ VEW + +R R GS +S N RPTKTLFVINFDPI TR RD++RHF
Sbjct: 86 GIDFGRKGRRIRVEWTKEDRTVGRRGSSRRSPTNARPTKTLFVINFDPINTRIRDLERHF 145
Query: 116 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 175
+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R +
Sbjct: 146 DKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGN 205
Query: 176 --SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYDRYNGPVYDQRRSPDH 228
SP R G R RSPSP R R SPDYGR + SP Y R RSPD+
Sbjct: 206 GYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYGRGG-------RSPDN 258
Query: 229 GRHRSPV-----PVYDRRRSPDYGRNR------------SPNFGRYRSRSPVRRSR 267
GR SP+ RSPDY R SP + R SRSP R R
Sbjct: 259 GRGVSPINGGRGDHGRGGRSPDYDREHREASPRRERREASPGYDRSPSRSPGRDER 314
>gi|212722462|ref|NP_001132395.1| hypothetical protein [Zea mays]
gi|194694266|gb|ACF81217.1| unknown [Zea mays]
gi|413926669|gb|AFW66601.1| hypothetical protein ZEAMMB73_609363 [Zea mays]
Length = 287
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 173/256 (67%), Gaps = 33/256 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+GFAF+Y ED+RDA DAI LD I FG
Sbjct: 2 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTGFAFIYMEDERDAEDAISRLDGIDFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RR+ VEW + +R R G+ +S N +PTKTLFVINFDPI TR RD++RHF+ YG
Sbjct: 62 RKGRRIKVEWTKEDRTADRRGNSRRSPTNAKPTKTLFVINFDPINTRIRDLERHFDKYGR 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V +VRI++NFAF+QFE QE+AT+ALE + S +DRVISVEYAL+DD E+ +R +
Sbjct: 122 VANVRIKKNFAFIQFEAQEDATRALEGANGSHFMDRVISVEYALRDDDEKGERATN---- 177
Query: 181 GYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
GY SP GR SP RR PSP YGRGR +R SPD+GR +
Sbjct: 178 GY---SPDRRGRERSPGARRSPSP-YGRGR-------------ERGSPDYGRGKE----- 215
Query: 239 DRRRSPDYGR-NRSPN 253
R SPDYGR RSP+
Sbjct: 216 --RGSPDYGRGGRSPD 229
>gi|217071906|gb|ACJ84313.1| unknown [Medicago truncatula]
Length = 289
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 167/249 (67%), Gaps = 36/249 (14%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+ IF GNFEY+ R+SELERLF +YG+++RVDMK+GFAF+Y ED+RDA IR LD I FG
Sbjct: 2 KAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAVIRALDRIEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSK---SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + ERG R + S AN RP+KTLFVINFD +TR RD++RHFEPYG
Sbjct: 62 RKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
++ VRIR+NFAFVQ+E++++A KALE+T+ SKL+DRVISVE+A +DD RR
Sbjct: 122 KIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDD---------RR 172
Query: 180 GGYGRHSP-------------YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSP 226
G HSP RSPSP R R SPDYGRG SP Y R +R SP
Sbjct: 173 NG---HSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSP-YKR-------ERSSP 221
Query: 227 DHGRHRSPV 235
D+GR + V
Sbjct: 222 DYGRGTAVV 230
>gi|356520473|ref|XP_003528886.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 253
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 181/272 (66%), Gaps = 28/272 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GN +++ RQS++ERLF +YG+++RVDMKSGFAFVY ED+RDA AIR LD FG
Sbjct: 2 KPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS---KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR+ VEW + ER R G KS +N RP+KTLFVINFDP+ R RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK +DRVI+VEYA++DD + RR
Sbjct: 122 KILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDD------RDRR 175
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPD--YGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPV 237
GY SP R SPD YGRGRSP+ P R SPD+G +P
Sbjct: 176 NGY----------SPDRRGHDSPDGRYGRGRSPS------PYRRGRGSPDYGHGSNPSSR 219
Query: 238 YDRRRSPDYGRNRSP-NFGRYRSRSPVRRSRT 268
D R SP Y R SP N GRY SRSP R R+
Sbjct: 220 PDPRGSPKYERAESPINNGRYDSRSPPPRERS 251
>gi|30696138|ref|NP_851174.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|21542447|sp|P92966.2|RSP41_ARATH RecName: Full=Arginine/serine-rich-splicing factor RSP41
gi|13877817|gb|AAK43986.1|AF370171_1 putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|10177739|dbj|BAB11052.1| arginine/serine-rich splicing factor RSP41 homolog [Arabidopsis
thaliana]
gi|16323490|gb|AAL15239.1| putative arginine/serine-rich splicing factor RSP41 homolog
[Arabidopsis thaliana]
gi|332008779|gb|AED96162.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 356
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 181/281 (64%), Gaps = 28/281 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPT---KTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG S + KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSPVPVY 238
RSPSP R R SPDYGRG SP + +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR------ERTSPDYGRGRRSPSPYK 234
Query: 239 DRRRSPDYG-----------------RNRSPNFGRYRSRSP 262
R SPDY RNRSP GR SRSP
Sbjct: 235 RARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
>gi|30696140|ref|NP_200017.2| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008780|gb|AED96163.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 357
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 181/281 (64%), Gaps = 28/281 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPT---KTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG S + KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSPVPVY 238
RSPSP R R SPDYGRG SP + +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR------ERTSPDYGRGRRSPSPYK 234
Query: 239 DRRRSPDYG-----------------RNRSPNFGRYRSRSP 262
R SPDY RNRSP GR SRSP
Sbjct: 235 RARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
>gi|388494018|gb|AFK35075.1| unknown [Lotus japonicus]
Length = 249
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/268 (51%), Positives = 179/268 (66%), Gaps = 24/268 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GN +++ RQS++ERLF +YG++ERVDMKSGFAFVY ED+RDA AIR LD FG
Sbjct: 2 KPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFG 61
Query: 63 YDRRRLSVEWARGERGRHR--DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RR+ VEW + ER R D K +N +P+KTLF+INFDP+ TR RD++RHF+PYG
Sbjct: 62 RKGRRIRVEWTKQERDSRRSADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+ ++RIRRNFAF+Q+E+ E+AT+ALE+T+ SK +DRVI+VEYA++DD +R D RR
Sbjct: 122 ISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAIRDDDDRRDGQSPDRR- 180
Query: 181 GYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDR 240
GR SP GR YGRGRSP+ P R SPD+G +P +
Sbjct: 181 --GRVSPDGR-------------YGRGRSPS------PYRRGRGSPDYGHGSNPASRPEP 219
Query: 241 RRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
R SP Y R SP GRY SRSP R R+
Sbjct: 220 RGSPKYERAESPQNGRYDSRSPPPRDRS 247
>gi|297792527|ref|XP_002864148.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
gi|297309983|gb|EFH40407.1| hypothetical protein ARALYDRAFT_495275 [Arabidopsis lyrata subsp.
lyrata]
Length = 357
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 182/281 (64%), Gaps = 28/281 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF +YG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFKRYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPT---KTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG S + KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGMRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAF+Q+E+QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNFAFIQYESQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSPVPVY 238
RSPSP R R SPDYGRG SP + +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR------ERTSPDYGRGRRSPSPYK 234
Query: 239 DRRRSPDYG-----------------RNRSPNFGRYRSRSP 262
R SPDY RNRSP GR SRSP
Sbjct: 235 RARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
>gi|356505098|ref|XP_003521329.1| PREDICTED: arginine/serine-rich-splicing factor RSP41-like [Glycine
max]
Length = 252
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/278 (52%), Positives = 183/278 (65%), Gaps = 41/278 (14%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GN +++ RQS++ERLF +YG+++RVDMKSGFAFVY ED+RDA AIR LD FG
Sbjct: 2 KPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS---KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR+ VEW + ER R G KS +N RP+KTLFVINFDP+ R RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVNARTRDLERHFDSYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD-------D 172
+L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK +DRVI+VEYA++DD +RD D
Sbjct: 122 KILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPD 181
Query: 173 R--YDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR 230
R +DSP G YGR GRSPSP R R SPDYG G +P+
Sbjct: 182 RRGHDSPD-GRYGR----GRSPSPYRRGRGSPDYGHGSNPSS------------------ 218
Query: 231 HRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
P P R SP Y R SP GRY SRSP R R+
Sbjct: 219 --RPEP----RGSPKYDRAESPINGRYDSRSPPPRDRS 250
>gi|300681317|emb|CAZ96031.1| arginine/serine-rich splicing factor [Sorghum bicolor]
Length = 324
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/264 (54%), Positives = 174/264 (65%), Gaps = 39/264 (14%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLD 57
RP+F GN +Y+ R SE+ERLF KYGR+ERVD+K+ GFAFVY ED+RDA DAI LD
Sbjct: 26 RPVFCGNLDYDVRISEVERLFGKYGRVERVDLKTVERSGGFAFVYMEDERDAEDAIHRLD 85
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
I FG RR+ VEW + +R R GS +S RPTKTLFVINFDPI TR RD++RHF
Sbjct: 86 GIDFGRKGRRIRVEWTKEDRTAGRRGSSRRSPTQARPTKTLFVINFDPINTRIRDLERHF 145
Query: 116 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 175
+ YG V +VRI++NFAFVQFE QE+AT+ALE T+ S +DRVISVEYAL+DD E+ +R +
Sbjct: 146 DKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYALRDDDEKGERGN 205
Query: 176 SPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRS 233
+SP GR SP RR PSP YGRGR +R SPD+GR +
Sbjct: 206 G--------YSPDRRGRERSPGRRRSPSP-YGRGR-------------ERGSPDYGRSKE 243
Query: 234 PVPVYDRRRSPDYGR-NRSPNFGR 256
R SPDYGR RSP+ GR
Sbjct: 244 -------RGSPDYGRGGRSPDNGR 260
>gi|1707370|emb|CAA67799.1| splicing factor [Arabidopsis thaliana]
Length = 356
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 181/281 (64%), Gaps = 28/281 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPT---KTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG S + KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRN+AF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNYAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSPVPVY 238
RSPSP R R SPDYGRG SP + +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR------ERTSPDYGRGRRSPSPYK 234
Query: 239 DRRRSPDYG-----------------RNRSPNFGRYRSRSP 262
R SPDY RNRSP GR SRSP
Sbjct: 235 RARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
>gi|358248400|ref|NP_001240131.1| uncharacterized protein LOC100796509 [Glycine max]
gi|255636874|gb|ACU18770.1| unknown [Glycine max]
Length = 374
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/305 (50%), Positives = 187/305 (61%), Gaps = 57/305 (18%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNFEY+ RQSELERLF +YG+++RVDMKSGFAF+Y ED+RDA AIR LD + FG
Sbjct: 7 RPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFG 66
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQ--RPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ERG R S ++ RP+KTLFVINFD TR RD++RHFEPYG
Sbjct: 67 RKGRRLRVEWTKHERGVRRPASSRRSSAIGRPSKTLFVINFDTYHTRTRDLERHFEPYGK 126
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD----- 175
++ VRIRRNFAFVQ+E++++A++ALE+T+ SKL+DRVISVE+A+KDD +R + Y
Sbjct: 127 IVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGR 186
Query: 176 --------------SPRRGGYGRHSP-YGRSPSPAYRRRPSPDYGRGR------------ 208
SP R G SP YGR PSP R R SPDYGR R
Sbjct: 187 DRQRDRSRDGRRSPSPYRKERG--SPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERA 244
Query: 209 SPAYDR-----------YNGPVYDQRRSP--------DHGRHRSPVPVYDRRRSPD--YG 247
SPAY R + PV D RSP DHG S P R+SP +G
Sbjct: 245 SPAYGRRSISPYRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGRKSPQNGHG 304
Query: 248 RNRSP 252
+RSP
Sbjct: 305 SSRSP 309
>gi|224130148|ref|XP_002320764.1| predicted protein [Populus trichocarpa]
gi|222861537|gb|EEE99079.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/237 (55%), Positives = 158/237 (66%), Gaps = 8/237 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+ IF GN +Y+ RQS+LERLF +YGRI+RVDMKSGFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KAIFCGNLDYDARQSDLERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDRAEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
RRL VEW + ER R +S N P+KTLFVINFDP+ TR RD++RHF+P+G
Sbjct: 62 RKGRRLRVEWTKQERESRRPAGSRRSSTNTTPSKTLFVINFDPVHTRTRDLERHFDPHGK 121
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
+L RIRRNFAFVQ+E QE+ATKALE+TD SK +DRVISVEYA +DD R+ R
Sbjct: 122 ILSTRIRRNFAFVQYELQEDATKALEATDMSKFMDRVISVEYAARDDERRNGYSPERRDR 181
Query: 181 GYGRHSPYG--RSPSPAYRRRPSPDYGRGRSPAYDR---YNGPVYDQRRSPDHGRHR 232
Y RSPSP R R SPDYG RS R YD+ SP++ R+R
Sbjct: 182 DRSPDRNYNRERSPSPDRRDRGSPDYGH-RSKTNSRPEPRGNHNYDKAESPENERYR 237
>gi|343171992|gb|AEL98700.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 170/271 (62%), Gaps = 41/271 (15%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNF++E R S+LERLF ++G+++RVDMK+GFAF+Y +D+RDA AIR LD FG
Sbjct: 1 RPIFCGNFDFEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDFG 60
Query: 63 YDRRRLSVEWARGER-GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRL VEW + E+ GR S+ AN RP+KTLFVINF P T+ RD++RHF+PYG +
Sbjct: 61 RKGRRLRVEWTKHEQGGRKPVSSRKSANLRPSKTLFVINF-PSHTQTRDLERHFDPYGKI 119
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++VRIR NF FVQ+++QE+ATKAL++T+ SK +DRVI+VEY+ + D D RR G
Sbjct: 120 VNVRIRGNFGFVQYDSQEDATKALDATNMSKFLDRVITVEYSSRGD-------DDSRRNG 172
Query: 182 YG-----------------------RHSP-YGRSPSP-AYRR-RPSPDYGRGRSPAYDRY 215
Y R SP YG PSP +YRR R SP YG G S
Sbjct: 173 YSPDRRVRDRSPDRRRRSPSPFRRERGSPDYGTGPSPISYRRERGSPVYGNGSS------ 226
Query: 216 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 246
P QR SP + R RS P D R SP+Y
Sbjct: 227 RSPRRLQRASPGYNRKRSLTPRRDVRASPEY 257
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S+ +FV NF T+ +LER F YG+I V ++ F FV ++ DA A+ + F
Sbjct: 92 SKTLFVINFPSHTQTRDLERHFDPYGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKF 151
Query: 62 GYDRRRLSVEW-ARGERGRHRDG 83
R ++VE+ +RG+ R+G
Sbjct: 152 L--DRVITVEYSSRGDDDSRRNG 172
>gi|343171990|gb|AEL98699.1| arginine/serine-rich-splicing factor, partial [Silene latifolia]
Length = 340
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 170/271 (62%), Gaps = 41/271 (15%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNF++E R S+LERLF ++G+++RVDMK+GFAF+Y +D+RDA AIR LD FG
Sbjct: 1 RPIFCGNFDFEARASDLERLFRRFGKVDRVDMKNGFAFIYMDDERDAGYAIRALDRTDFG 60
Query: 63 YDRRRLSVEWARGER-GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RRL VEW + E+ GR S+ AN RP+KTLFVINF P T+ RD++RHF+PYG +
Sbjct: 61 RKGRRLRVEWTKHEQGGRKPVSSRKSANLRPSKTLFVINF-PSHTQTRDLERHFDPYGKI 119
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
++VRIR NF FVQ+++QE+ATKAL++T+ SK +DRVI+VEY+ + D D RR G
Sbjct: 120 VNVRIRGNFGFVQYDSQEDATKALDATNMSKFLDRVITVEYSSRGD-------DDSRRNG 172
Query: 182 YG-----------------------RHSP-YGRSPSP-AYRR-RPSPDYGRGRSPAYDRY 215
Y R SP YG PSP +YRR R SP YG G S
Sbjct: 173 YSPDRRVRDRSPDRRRRSPSPFRRERGSPDYGTGPSPISYRRERGSPVYGNGSS------ 226
Query: 216 NGPVYDQRRSPDHGRHRSPVPVYDRRRSPDY 246
P QR SP + R RS P D R SP+Y
Sbjct: 227 RSPRRLQRASPAYNRKRSLTPRRDVRASPEY 257
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S+ +FV NF T+ +LER F YG+I V ++ F FV ++ DA A+ + F
Sbjct: 92 SKTLFVINFPSHTQTRDLERHFDPYGKIVNVRIRGNFGFVQYDSQEDATKALDATNMSKF 151
Query: 62 GYDRRRLSVEW-ARGERGRHRDG 83
R ++VE+ +RG+ R+G
Sbjct: 152 L--DRVITVEYSSRGDDDSRRNG 172
>gi|255539555|ref|XP_002510842.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223549957|gb|EEF51444.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 331
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 161/245 (65%), Gaps = 29/245 (11%)
Query: 43 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTKTLFVIN 100
ED+RDA DAIRGLD I FG RRL VEW + ERG R G+ +S N RP+KTLFVIN
Sbjct: 1 MEDERDAEDAIRGLDRIEFGRKGRRLRVEWTKQERGIRRPGNSRRSSTNTRPSKTLFVIN 60
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
FDP TR +D++RHFEPYG ++ VRIRRNFAFVQ+E+Q++ATKALE+T+ SKL+DRVISV
Sbjct: 61 FDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKLMDRVISV 120
Query: 161 EYALKDDSERDDRYD-------SPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 213
EYA++DD ER + Y SP R + R RS SP R R SPDYGRG SP
Sbjct: 121 EYAVRDDDERRNGYSPDRGRDRSPDRRSHDRK----RSSSPYRRERGSPDYGRGPSP--- 173
Query: 214 RYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSP--------NFGRYRSRSPV 263
GP +R SPD+GR RSP P R SPDYGR +RSP + GR SRSP
Sbjct: 174 ---GPYRRERASPDYGRRRSPSPYKRDRASPDYGRASSRSPYRRERPGSDHGRGSSRSPY 230
Query: 264 RRSRT 268
R R
Sbjct: 231 HRERA 235
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ + TR +LER F YGRI V ++ FAFV +E DA A+ N+
Sbjct: 53 SKTLFVINFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYESQDDATKALEAT-NMS 111
Query: 61 FGYDRRRLSVEWA 73
D R +SVE+A
Sbjct: 112 KLMD-RVISVEYA 123
>gi|255646388|gb|ACU23673.1| unknown [Glycine max]
Length = 234
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 131/165 (79%), Gaps = 3/165 (1%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GN +++ RQS++ERLF +YG+++RVDMKSGFAFVY ED+RDA AIR LD FG
Sbjct: 2 KPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGS---KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
RR+ VEW + ER R G KS +N RP+KTLFVINFDP+ R RD++RHF+ YG
Sbjct: 62 RKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDSYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+L++RIRRNFAF+QFE+QE+AT+ALE+T+ SK +DRVI+VEYA+
Sbjct: 122 KILNIRIRRNFAFIQFESQEDATRALEATNLSKFMDRVITVEYAI 166
>gi|326494512|dbj|BAJ90525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 247
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 160/251 (63%), Gaps = 30/251 (11%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTK 94
GFAFVY ED+RDA DAIR LD FG RRL VEW + +R GR +G +S ++ +PTK
Sbjct: 6 GFAFVYMEDERDAEDAIRRLDRTDFGRTGRRLRVEWTKEDRSGGRKGNGKRSPSSVKPTK 65
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
TLFVINFDPI TR RD+++HF+ YG + ++RIRRNFAFVQ+ETQ++ATKAL+ T+ S ++
Sbjct: 66 TLFVINFDPINTRTRDLEKHFDLYGKIANIRIRRNFAFVQYETQKDATKALDGTNGSTVM 125
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRH-----------SPYGRSPSPAYRRRPSPD 203
DRVISVEYAL+DD E+ + Y RRGG R SPYGR R R SPD
Sbjct: 126 DRVISVEYALRDDDEKRNGYSPDRRGGRDRSPDRRDNRGRSASPYGRG-----RERGSPD 180
Query: 204 YGRGR---SPAYDRYNGPVYDQRRSPDHGRHRSPVPVY-DRRRSPDYGRNR---SPNFGR 256
YGRGR SP Y + R SPD+ R SP D R SP Y R R SP + R
Sbjct: 181 YGRGRERGSPDYGKGGA-----RDSPDYVRGGSPYGSKGDDRASPKYDRERREASPAYDR 235
Query: 257 YRSRSPVRRSR 267
RSRSP R R
Sbjct: 236 RRSRSPAREDR 246
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ TR +LE+ F YG+I + ++ FAFV +E +DA A+ G +
Sbjct: 64 TKTLFVINFDPINTRTRDLEKHFDLYGKIANIRIRRNFAFVQYETQKDATKALDGTNGST 123
Query: 61 FGYDRRRLSVEWA 73
R +SVE+A
Sbjct: 124 VM--DRVISVEYA 134
>gi|145334133|ref|NP_001078447.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|222423494|dbj|BAH19717.1| AT4G25500 [Arabidopsis thaliana]
gi|332659669|gb|AEE85069.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 317
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/240 (52%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRP 92
GFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + RP
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 62
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 152
+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ SK
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 122
Query: 153 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 212
L+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 123 LMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV- 180
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 181 ----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 236
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ + TR +LE+ F YG+I V ++ FAF+ +E DA A+ +N
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 122
Query: 61 FGYDRRRLSVEWA 73
+ +SVE+A
Sbjct: 123 LM--DKVISVEYA 133
>gi|222424234|dbj|BAH20075.1| AT4G25500 [Arabidopsis thaliana]
Length = 317
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRP 92
GFAFVY ED+RDA DAIR LD FG RRL VEW + ERG + RP
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP 62
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 152
+KTLFVINFD TR RD+++HFEPYG +++VRIRRNFAF+Q++ QE+AT+AL++++ SK
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYKAQEDATRALDASNNSK 122
Query: 153 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 212
L+D+VISVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 123 LMDKVISVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV- 180
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 181 ----AAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 236
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ + TR +LE+ F YG+I V ++ FAF+ ++ DA A+ +N
Sbjct: 63 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYKAQEDATRALDASNNSK 122
Query: 61 FGYDRRRLSVEWA 73
+ +SVE+A
Sbjct: 123 LM--DKVISVEYA 133
>gi|296089073|emb|CBI38776.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 150/240 (62%), Gaps = 31/240 (12%)
Query: 36 SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPT 93
+GFAFVY +D+RDA DAIR LD FG R+L VEW + ERG R G KS AN +P+
Sbjct: 8 AGFAFVYMDDERDAEDAIRRLDRTVFGRKGRQLRVEWTKQERGIRRPGGSRKSSANMKPS 67
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
KTLFVINFDPI TR RD++RHF+ YG +L++RIRRNFAF+QFE+QE+ATKAL++T+ SK
Sbjct: 68 KTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDATNMSKF 127
Query: 154 VDRVISVEYALKDDSERDDRYDSPRRGGYG-----RHSPYGRSPSPAYRRRPSPDYGRGR 208
+DRVISVEYA +DD + SP R G R GRSPSP +R R SPDYG G
Sbjct: 128 MDRVISVEYAARDDDDDRRNGYSPERRGRDMSPDRRSHDRGRSPSPYHRDRASPDYGHGA 187
Query: 209 SPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
+ + R P R SP+Y R+ SP RY SRSP R R+
Sbjct: 188 NA----------NSRSEP--------------RGSPNYDRDESPVNERYHSRSPPPRERS 223
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ TR +LER F YG+I + ++ FAF+ FE DA A+ +
Sbjct: 67 SKTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDATNMSK 126
Query: 61 FGYDRRRLSVEWA 73
F R +SVE+A
Sbjct: 127 FM--DRVISVEYA 137
>gi|195615816|gb|ACG29738.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
gi|223947499|gb|ACN27833.1| unknown [Zea mays]
gi|413926667|gb|AFW66599.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 270
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 144/222 (64%), Gaps = 33/222 (14%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGS--KSMANQRPTK 94
GFAF+Y ED+RDA DAI LD I FG RR+ VEW + +R R G+ +S N +PTK
Sbjct: 19 GFAFIYMEDERDAEDAISRLDGIDFGRKGRRIKVEWTKEDRTADRRGNSRRSPTNAKPTK 78
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
TLFVINFDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE + S +
Sbjct: 79 TLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGANGSHFM 138
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSP--YGRSPSPAYRRRPSPDYGRGRSPAY 212
DRVISVEYAL+DD E+ +R + GY SP GR SP RR PSP YGRGR
Sbjct: 139 DRVISVEYALRDDDEKGERATN----GY---SPDRRGRERSPGARRSPSP-YGRGR---- 186
Query: 213 DRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGR-NRSPN 253
+R SPD+GR + R SPDYGR RSP+
Sbjct: 187 ---------ERGSPDYGRGKE-------RGSPDYGRGGRSPD 212
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ TR +LER F KYGR+ V +K FAF+ FE DA A+ G +
Sbjct: 77 TKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEAQEDATRALEGANGSH 136
Query: 61 FGYDRRRLSVEWA 73
F R +SVE+A
Sbjct: 137 FM--DRVISVEYA 147
>gi|297741108|emb|CBI31839.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 127/181 (70%), Gaps = 9/181 (4%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPTK 94
GFAF+Y ED+RDA DAIRGLD FG RRL VEW + ERG R +S N RP K
Sbjct: 14 GFAFIYMEDERDAEDAIRGLDRTGFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAK 73
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
TLFVINFDP TR RD++RHF+PYG +L++RIRRNFAF+Q+E+QE+AT+ALE+T+ SKL+
Sbjct: 74 TLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLM 133
Query: 155 DRVISVEYALKDDSERDDRY--DSPRRGGYGRHSPYGRSPSPA-YRR----RPSPDYGRG 207
DRVISVEYA++DD ER + Y D RR R PS + YR R PDYGRG
Sbjct: 134 DRVISVEYAVRDDDERRNGYSPDGRRRDKERTSHDSARGPSRSPYRSERSDRAIPDYGRG 193
Query: 208 R 208
R
Sbjct: 194 R 194
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ Y TR +LER F YG+I + ++ FAF+ +E DA A+ N+
Sbjct: 72 AKTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEAT-NMS 130
Query: 61 FGYDRRRLSVEWA 73
D R +SVE+A
Sbjct: 131 KLMD-RVISVEYA 142
>gi|42573039|ref|NP_974616.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
gi|332659668|gb|AEE85068.1| arginine/serine-rich-splicing factor RSP40 [Arabidopsis thaliana]
Length = 309
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 148/234 (63%), Gaps = 14/234 (5%)
Query: 43 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFV 98
ED+RDA DAIR LD FG RRL VEW + ERG + RP+KTLFV
Sbjct: 1 MEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFV 60
Query: 99 INFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
INFD TR RD+++HFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VI
Sbjct: 61 INFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVI 120
Query: 159 SVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP 218
SVEYA+KDD R + + SP R RSPSP R R SPDYGRG SP
Sbjct: 121 SVEYAVKDDDARGNGH-SPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AA 174
Query: 219 VYDQRRSPDHGRHRSPVPVYDRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
+R SPD+GR RSP P RR SP+YGR+R N R R SP + SR+
Sbjct: 175 YRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 228
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ + TR +LE+ F YG+I V ++ FAF+ +E DA A+ +N
Sbjct: 55 SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 114
Query: 61 FGYDRRRLSVEWA 73
+ +SVE+A
Sbjct: 115 LM--DKVISVEYA 125
>gi|223973269|gb|ACN30822.1| unknown [Zea mays]
gi|413935349|gb|AFW69900.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
gi|413935350|gb|AFW69901.1| hypothetical protein ZEAMMB73_675088 [Zea mays]
Length = 238
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 149/244 (61%), Gaps = 26/244 (10%)
Query: 43 FEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVIN 100
ED+RDA DAI LD I FG RR+ VEW + +R GR +S N +PTKTLFVIN
Sbjct: 1 MEDERDAEDAISRLDGIDFGRKGRRIRVEWTKEDRTVGRKSSSRRSPTNTKPTKTLFVIN 60
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
FDPI TR RD++RHF+ YG V +VRI++NFAF+QFE QE+AT+ALE T+ S +DRVISV
Sbjct: 61 FDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSHFMDRVISV 120
Query: 161 EYALKDDSERDDRYD--SPRRGGYGRHSPYGRSPSP--AYRRRPSPDYGRGR---SPAYD 213
EYAL+DD E+ +R + SP R G R RSPSP R R SPDYGR + SP Y
Sbjct: 121 EYALRDDDEKGERGNGYSPDRRGRERSPGRRRSPSPYGRGRERGSPDYGRSKERGSPDYG 180
Query: 214 RYNGPVYDQRRSPDHGRHRSPVP------VYDRRRSPDYGRNR----SPNFGRYRSRSPV 263
R RSPD+GR SP RSPDY R R P + R SRSP
Sbjct: 181 RGG-------RSPDNGRGVSPAGGGRGDHARGGGRSPDYDRQRREASPPGYDRSPSRSPG 233
Query: 264 RRSR 267
R +R
Sbjct: 234 REAR 237
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 9/84 (10%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FV NF+ TR +LER F KYGR+ V +K FAF+ FE DA A+ G +
Sbjct: 53 TKTLFVINFDPINTRIRDLERHFDKYGRVANVRIKKNFAFIQFEIQEDATRALEGTNGSH 112
Query: 61 FGYDRRRLSVEWA------RGERG 78
F D R +SVE+A +GERG
Sbjct: 113 F-MD-RVISVEYALRDDDEKGERG 134
>gi|238481546|ref|NP_001154774.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008782|gb|AED96165.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 324
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 150/247 (60%), Gaps = 28/247 (11%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT--- 93
GFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 62
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL
Sbjct: 63 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 122
Query: 154 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 213
+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 123 MDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAH 181
Query: 214 RYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFG 255
+ +R SPD+GR RSP P R SPDY RNRSP G
Sbjct: 182 KR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKG 235
Query: 256 RYRSRSP 262
R SRSP
Sbjct: 236 RGESRSP 242
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 5 IFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
+FV NF+ + TR +LER F YG+I V ++ FAF+ +E DA A+ ++
Sbjct: 65 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM- 123
Query: 64 DRRRLSVEWA 73
+ +SVE+A
Sbjct: 124 -DKVISVEYA 132
>gi|227206136|dbj|BAH57123.1| AT5G52040 [Arabidopsis thaliana]
Length = 323
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 150/247 (60%), Gaps = 28/247 (11%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT--- 93
GFAFVY ED+RDA DAIR LD +G RRL VEW + +RG S +
Sbjct: 3 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPS 62
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
KTLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL
Sbjct: 63 KTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKL 122
Query: 154 VDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYD 213
+D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP
Sbjct: 123 MDKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAH 181
Query: 214 RYNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFG 255
+ +R SPD+GR RSP P R SPDY RNRSP G
Sbjct: 182 KR------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKG 235
Query: 256 RYRSRSP 262
R SRSP
Sbjct: 236 RGESRSP 242
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 5 IFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
+FV NF+ + TR +LER F YG+I V ++ FAF+ +E DA A+ ++
Sbjct: 65 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM- 123
Query: 64 DRRRLSVEWA 73
+ +SVE+A
Sbjct: 124 -DKVISVEYA 132
>gi|238481544|ref|NP_001154773.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
gi|332008781|gb|AED96164.1| arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]
Length = 329
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 125/246 (50%), Positives = 149/246 (60%), Gaps = 28/246 (11%)
Query: 38 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT---K 94
FAFVY ED+RDA DAIR LD +G RRL VEW + +RG S + K
Sbjct: 10 FAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSK 69
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
TLFVINFD TR RD++RHFEPYG +++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+
Sbjct: 70 TLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 129
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDR 214
D+VISVEYA+KDD R + Y SP R RSPSP R R SPDYGRG SP +
Sbjct: 130 DKVISVEYAVKDDDSRGNGY-SPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHK 188
Query: 215 YNGPVYDQRRSPDHGR-HRSPVPVYDRRRSPDYG-----------------RNRSPNFGR 256
+R SPD+GR RSP P R SPDY RNRSP GR
Sbjct: 189 R------ERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGR 242
Query: 257 YRSRSP 262
SRSP
Sbjct: 243 GESRSP 248
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 5 IFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
+FV NF+ + TR +LER F YG+I V ++ FAF+ +E DA A+ ++
Sbjct: 71 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM- 129
Query: 64 DRRRLSVEWA 73
+ +SVE+A
Sbjct: 130 -DKVISVEYA 138
>gi|6759507|emb|CAB69816.1| putative arginine/serine-rich splicing factor [Elaeis guineensis]
Length = 114
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 99/113 (87%), Gaps = 2/113 (1%)
Query: 36 SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTK 94
+G+AFVYFED+ DA DAIRG D+IPFGY RRRLSV+W+R GERG R G +SM N RPTK
Sbjct: 1 TGYAFVYFEDEHDAEDAIRGPDDIPFGYSRRRLSVKWSRQGERG-PRHGFRSMTNMRPTK 59
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 147
TLFVINFDPIRTR RDI+RHFEPYG +L+V+IRRNFAFVQFETQEEATKALE
Sbjct: 60 TLFVINFDPIRTRVRDIERHFEPYGKILNVQIRRNFAFVQFETQEEATKALEC 112
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
++ +FV NF+ TR ++ER F YG+I V ++ FAFV FE +A A+
Sbjct: 58 TKTLFVINFDPIRTRVRDIERHFEPYGKILNVQIRRNFAFVQFETQEEATKAL 110
>gi|384252478|gb|EIE25954.1| hypothetical protein COCSUDRAFT_12541 [Coccomyxa subellipsoidea
C-169]
Length = 162
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 105/151 (69%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F GNFEY+ E+ERLF +YG ++RVDMK+GFAFVY D RD DAIRGLD FG
Sbjct: 5 RPVFCGNFEYDASVREIERLFDRYGSLDRVDMKTGFAFVYMRDSRDGDDAIRGLDGREFG 64
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRL VEWA+ + R +P TLFV+NFD RTRERD+++HFEP+G +
Sbjct: 65 NRRRRLRVEWAKMDGEVRRREDLRRRQMKPATTLFVVNFDADRTRERDLEKHFEPFGRLK 124
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKL 153
V+I+RN+AFVQFE ++A AL+S + + L
Sbjct: 125 RVQIKRNYAFVQFENVDQAADALKSVNGTHL 155
>gi|449529618|ref|XP_004171795.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like, partial
[Cucumis sativus]
Length = 282
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/177 (57%), Positives = 119/177 (67%), Gaps = 11/177 (6%)
Query: 85 KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 144
+S N RP+KTLFVINFDP TR RD++RHF+PYG +L VRIRRNFAFVQ+E QE+AT+A
Sbjct: 6 RSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRA 65
Query: 145 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
LE T+ SKL+DRVISVEYA++DD ++ + Y SP R RS SP R R SPDY
Sbjct: 66 LELTNMSKLMDRVISVEYAVRDDDDKRNGY-SPDRNRDRSPDRKRRSSSPYRRERGSPDY 124
Query: 205 GRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRR---SPDYGRNRSPNFGRYR 258
G G S P QR SPD+G RSP P Y R R SPDYGR RSPN YR
Sbjct: 125 GNGIS------RSPYRRQRASPDYGSRRSPSP-YQRERERGSPDYGRGRSPNHSPYR 174
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ Y TR +LER F YG+I V ++ FAFV +E DA A+ L N+
Sbjct: 14 SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE-LTNMS 72
Query: 61 FGYDRRRLSVEWA 73
D R +SVE+A
Sbjct: 73 KLMD-RVISVEYA 84
>gi|159475431|ref|XP_001695822.1| hypothetical protein CHLREDRAFT_80366 [Chlamydomonas reinhardtii]
gi|158275382|gb|EDP01159.1| predicted protein [Chlamydomonas reinhardtii]
Length = 170
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 109/166 (65%), Gaps = 8/166 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+F+GNFEYE + ++ RL KYG +E++DMK G+AFV D AIR LD +G
Sbjct: 7 RPLFIGNFEYEAEERDIVRLMEKYGPVEKIDMKQGYAFVCMRYKEDGDVAIRKLDRTEWG 66
Query: 63 YDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
Y +R L VEWA + E R RD +P++TLFV+NFD RT ERDI+R+F +G +
Sbjct: 67 YKKRMLKVEWAQKSEADRKRD-------TKPSRTLFVVNFDVRRTTERDIERYFGRFGRL 119
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
V+I+++++FVQF+ E+A KA+E + +++ R ++VEY +D
Sbjct: 120 TRVQIKKSYSFVQFQNVEDAIKAMERANGAQMEGRTLAVEYVQNED 165
>gi|440802526|gb|ELR23455.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 348
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R IFVGN + T E+ LF G I RVDMK G+AFV+ E+ A +R LD G
Sbjct: 61 RAIFVGNLDPYTTTEEVRELFEGKGDIRRVDMKQGYAFVFLENGHHRA--VRELDGSLHG 118
Query: 63 YDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
R+RL VE ARG+ + D + A +RP++TLFV+NFD I TR RD++ F PYG
Sbjct: 119 --RKRLRVELARGDGLIKKREDERRRDAARRPSETLFVVNFDAISTRARDLEDLFSPYGR 176
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
++ + ++RNF FVQF EEAT+ALE+ + +K+VDRVISVEY +
Sbjct: 177 IVRIELKRNFGFVQFSAVEEATRALEALNGTKMVDRVISVEYVAR 221
>gi|307105692|gb|EFN53940.1| hypothetical protein CHLNCDRAFT_25380 [Chlorella variabilis]
Length = 277
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VGN+EY+ + ELER F KYG +ERV+ KSGF FV+++D RDA DAI LD +G
Sbjct: 10 VYVGNYEYDASERELERTFDKYGPVERVEYKSGFCFVHYKDKRDAEDAIHALDGREWGRL 69
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
RRRL VE+A+ + R+ K+ N P +TLFV FDP R RDI++ FE +G ++
Sbjct: 70 RRRLRVEFAKND-ANVREREKARRNSADPNRTLFVAGFDPRGIRTRDIEKAFEEFGRLVR 128
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I++ F+FV+FE E+A +A E S++ R I+VE
Sbjct: 129 CEIKKTFSFVEFERIEDAKEACEQLHGSRINGREITVE 166
>gi|159477703|ref|XP_001696948.1| hypothetical protein CHLREDRAFT_120019 [Chlamydomonas reinhardtii]
gi|158274860|gb|EDP00640.1| predicted protein [Chlamydomonas reinhardtii]
Length = 169
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 95/161 (59%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RPIF GNFEYE ++ ++ RLF +G +++++MK GFAFVY D A+ L +G
Sbjct: 9 RPIFCGNFEYEAQERDVVRLFETFGPVDKIEMKEGFAFVYMRHVCDGEAAVAALHGWEWG 68
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RRRL VEW + + P+ LFVINFDP RT E+++ R+F P+G V
Sbjct: 69 VQRRRLKVEWGKVRAVWAVGSGHRCSGSPPSHKLFVINFDPSRTGEQELWRYFSPFGRVT 128
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
V++ RNFAFV F +A A + T+ + L R ++VE++
Sbjct: 129 RVQMVRNFAFVVFADLRDAVAAQQRTNGAILEGRTLNVEFS 169
>gi|194693536|gb|ACF80852.1| unknown [Zea mays]
gi|194699312|gb|ACF83740.1| unknown [Zea mays]
gi|414588140|tpg|DAA38711.1| TPA: arginine/serine-rich splicing factor 2 variant 1 isoform 1
[Zea mays]
gi|414588141|tpg|DAA38712.1| TPA: hypothetical protein ZEAMMB73_778058 [Zea mays]
Length = 137
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 94/134 (70%), Gaps = 8/134 (5%)
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ TR DI+RHF P+GN+ VRIR+NFAFVQFET EEA KALE+T + L+DRVISVEYA
Sbjct: 1 MNTRVSDIERHFTPFGNISSVRIRKNFAFVQFETMEEARKALEATHATTLLDRVISVEYA 60
Query: 164 LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN--GPVYD 221
+DDSE DRY SPRRGG SP YR RPSPDYGR SP Y Y+ GPV D
Sbjct: 61 FRDDSEVSDRYGSPRRGGGYGRR----GDSPVYRSRPSPDYGRPASPVYGSYDGPGPVRD 116
Query: 222 Q-RRSPDHGRHRSP 234
+ RRSP + R RSP
Sbjct: 117 RYRRSPAY-RSRSP 129
>gi|194698618|gb|ACF83393.1| unknown [Zea mays]
Length = 138
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 99/152 (65%), Gaps = 21/152 (13%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRS 225
DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 63 DDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY---------- 108
Query: 226 PDHGRHRSPVPVYDR-RRSPDYGRNRSPNFGR 256
GR RS PV DR RRSP Y R+RSP R
Sbjct: 109 ---GRSRS--PVRDRYRRSPAY-RSRSPPANR 134
>gi|413917963|gb|AFW57895.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917964|gb|AFW57896.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
gi|413917965|gb|AFW57897.1| arginine/serine-rich splicing factor 1 variant 3 isoform 3 [Zea
mays]
gi|413917966|gb|AFW57898.1| hypothetical protein ZEAMMB73_539697 [Zea mays]
Length = 121
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 86/130 (66%), Gaps = 17/130 (13%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
TR DI+RHF P+GN+ VRIR+NFAFV+FET EEA KALE+T + L+DRVISVEYA +
Sbjct: 3 TRVSDIERHFAPFGNISSVRIRKNFAFVRFETLEEARKALEATHATMLLDRVISVEYAFR 62
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRS 225
DD ER DRYDSPRRGG SPAYR RPSPDYGR SP Y Y
Sbjct: 63 DDDERSDRYDSPRRGGGYGRR----GDSPAYRSRPSPDYGRPASPVYGSY---------- 108
Query: 226 PDHGRHRSPV 235
GR RSPV
Sbjct: 109 ---GRSRSPV 115
>gi|219123281|ref|XP_002181956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406557|gb|EEC46496.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 361
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 19/183 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGR-------------IERVDMKSGFAFVYFEDDRDA 49
RP+F+GN E+ LF + ++R+D+K G+ FV+ +D
Sbjct: 32 RPVFLGNLVPNYSTDEVTTLFERPMLPAAAAEGAYRPIPVDRIDLKRGYCFVFLKDAATQ 91
Query: 50 ADA------IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDP 103
AD + ++ + L E+ARG+ R + N P++TLFV+NF
Sbjct: 92 ADKEQAERFVSDINGMQIANVSNSLRAEFARGDGRVKRKEDERRKNIAPSETLFVVNFHE 151
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
T++ D++ FEP+G ++ + ++RN+AFVQF+T EATKA E+T+ KL V++VEY
Sbjct: 152 ETTKKEDLQMLFEPFGELVRIDLKRNYAFVQFKTIAEATKAKETTNGGKLDQSVLTVEYV 211
Query: 164 LKD 166
++
Sbjct: 212 ARE 214
>gi|449528507|ref|XP_004171245.1| PREDICTED: arginine/serine-rich-splicing factor RSP40-like,
partial [Cucumis sativus]
Length = 73
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+PIF GNFEY+ RQ +LERLFS+YG+++RVDMKSGFAF+Y ED+RDA DAIR LD FG
Sbjct: 2 KPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRREFG 61
Query: 63 YDRRRLSVEWAR 74
RRL VEW +
Sbjct: 62 RKGRRLRVEWTK 73
>gi|224063959|ref|XP_002301321.1| predicted protein [Populus trichocarpa]
gi|222843047|gb|EEE80594.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+ IF GN +Y+ RQS++ERLF +YGRI+RVDMKSGFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEFG 61
Query: 63 YDRRRLSVEWAR 74
RRL VEW +
Sbjct: 62 RKGRRLRVEWTK 73
>gi|449018009|dbj|BAM81411.1| similar to splicing factor RSp31 [Cyanidioschyzon merolae strain
10D]
Length = 301
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 22/172 (12%)
Query: 16 QSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAAD---AIRGLDNIPFGYDRRRLSVEW 72
Q ++E+L YG+++R++MKS + FVYF +D AI L+ G R L+ EW
Sbjct: 40 QRDIEKLVEPYGKVQRIEMKSNYCFVYFSEDTAVEAYEHAIAALNGQRLGSQSRILTAEW 99
Query: 73 ARGER----GRHRDGSKSMANQ---------------RPTKTLFVINFDPIRTRERDIKR 113
ARG R ++ K++ + +KTLFV+NFDP RD+
Sbjct: 100 ARGTAPASISRLQESEKTLGGEDSITGGDGACLENSVTTSKTLFVVNFDPDEITSRDLLI 159
Query: 114 HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
HF +G + + R++FAF++F + ++A +A D + + R +SVE++ K
Sbjct: 160 HFHRFGPIERIERRKHFAFIEFRSLDDAIRARSEMDGAYIGCRQVSVEFSQK 211
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQF------ETQEEATKALE 146
K L++ N R +RDI++ EPYG V + ++ N+ FV F E E A AL
Sbjct: 27 VKALYIANIG--RAPQRDIEKLVEPYGKVQRIEMKSNYCFVYFSEDTAVEAYEHAIAALN 84
Query: 147 STDRSKLVDRVISVEYA 163
R R+++ E+A
Sbjct: 85 G-QRLGSQSRILTAEWA 100
>gi|452824262|gb|EME31266.1| arginine/serine-rich splicing factor, putative [Galdieria
sulphuraria]
Length = 483
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 10/171 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP-- 60
R ++VGN + ++++LF ++ I RVD+KSGFAFV+ ED A AIR L+
Sbjct: 57 RQLYVGNIPPDATVPQIQKLFEEFQPIARVDLKSGFAFVFLEDGEQAERAIRLLNGTKNE 116
Query: 61 --FGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
FG+ R L VE+A+ + + K A + PT++LFV NF P RERD++R F+
Sbjct: 117 ELFGF--RTLKVEYAKDASLVKQREEERKRRAERNPTESLFVTNF-PSYFRERDLERIFD 173
Query: 117 PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYALKD 166
+G V++V I R++AFV F + ++A+ A E L D R + VEY +
Sbjct: 174 QFGKVVNVEIIRSYAFVTFASIKDASFAYEKMHHFTLDDGRELHVEYVTAN 224
>gi|302835886|ref|XP_002949504.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
gi|300265331|gb|EFJ49523.1| hypothetical protein VOLCADRAFT_80657 [Volvox carteri f.
nagariensis]
Length = 139
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%), Gaps = 8/117 (6%)
Query: 48 DAADAIRGLDNIPFGYDRRRLSVEWA-RGERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
D +A+R LD +GY RR+L VEWA + E R RD RP+KTLFV+NFD RT
Sbjct: 6 DGDEAVRRLDRTEWGYKRRQLRVEWAQKTEADRKRDT-------RPSKTLFVVNFDVRRT 58
Query: 107 RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
ERDI+R+F +G + V+I++N++FVQF E A +ALE ++ +++ R ++VE+
Sbjct: 59 SERDIERYFSRFGRLSRVQIKKNYSFVQFVDVESAVRALERSNGAQMDGRTLAVEFV 115
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 2 SRPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
S+ +FV NF+ T + ++ER FS++GR+ RV +K ++FV F D A A+ +
Sbjct: 45 SKTLFVVNFDVRRTSERDIERYFSRFGRLSRVQIKKNYSFVQFVDVESAVRALERSNGAQ 104
Query: 61 FGYDRRRLSVEWAR 74
D R L+VE+ +
Sbjct: 105 M--DGRTLAVEFVQ 116
>gi|397573588|gb|EJK48771.1| hypothetical protein THAOC_32400 [Thalassiosira oceanica]
Length = 366
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 19/180 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGR-------------IERVDMKSGFAFVYFEDDRDA 49
RP+F+GN + + ++E +F+ +ERVDMK G+ FV+ +D +
Sbjct: 50 RPVFLGNLSHACQAGDVEAMFTSPPTGGGDGGEAPAPIPVERVDMKRGYCFVFLKDAFNQ 109
Query: 50 ADA------IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDP 103
A+ ++ + + + E+ARG+ R + +P +TLFV+NF
Sbjct: 110 AEKERAERFVQEICGMQVPNVSNAVRAEFARGDGRIKRKEDERRRQIQPNETLFVVNFHE 169
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
T+ D+ F PYG ++ + ++RN+AFVQFET ++A A E+T+ KL ++VEY
Sbjct: 170 ETTKREDLDMLFSPYGKIVRIEMKRNYAFVQFETIDQAIAAKEATNGGKLDQSELTVEYV 229
>gi|224005402|ref|XP_002296352.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209586384|gb|ACI65069.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 173
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 7/164 (4%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGR---IERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59
RPIF GN + S++E +F R I+RVDMK G+ FV+ +D D + R + N
Sbjct: 2 RPIFFGNLSHNCVASDVENIFRNPRRPLPIDRVDMKRGYCFVFLKDAVDEVEK-RRIQNY 60
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
L E+ARG+ R + P++TLFV+NF T+ D+++ F+ YG
Sbjct: 61 VVDIS---LRAEFARGDGRIKRKEDERRKKITPSETLFVVNFHEQTTKREDLEQLFQQYG 117
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ V ++RN+AFVQF+T +EA A + T+ KL I+VE+
Sbjct: 118 ELVRVDMKRNYAFVQFKTVDEAQAAKDGTNGGKLDQSEITVEFV 161
>gi|281209187|gb|EFA83362.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 503
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 5 IFVGNFEYETRQSELERLFSKY---GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
+F+GN + ++E+L + + I +D+K+G+AFV+ D DA I G+
Sbjct: 61 VFIGNLPHGLDNYDIEQLCNPFISRSSILTIDLKNGYAFVFLHDKDDADKLIDGMHKT-- 118
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
Y R L+V+ ARGE + + K +P T+F+++++ T E I R +P+G++
Sbjct: 119 NYRGRTLTVQHARGENRKLLNREKK---AKPCPTIFLVHYNVDTTTEESISRLCKPFGDI 175
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ + +R+ F FV+F E+ATKALE+ + ++ + VE+
Sbjct: 176 VRIEMRKTFCFVEFTDAEQATKALEALHKKEIDGSKLVVEFV 217
>gi|410906771|ref|XP_003966865.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 416
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 25/242 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET E+ LFS+YG+I + F FV+ +D +A +AIR L + +
Sbjct: 4 IFIGNLASETTSDEIRSLFSQYGKIAECTIVKNFGFVHMDDKAEADEAIRNLHQ--YELN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE +RG+ R + L V N I ++++ FE +G VL
Sbjct: 62 GQPMNVELSRGK-------------SRGSTKLHVGN---IACTNQELRAKFEEFGAVLEC 105
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +N+AFV E E+A A+ D + +++SV+ + R Y +
Sbjct: 106 DIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLSTSRLRTAPGMGNRSGCYRCGQ 165
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
G + + P ++ P P+PD G R G +D PDHG + V +
Sbjct: 166 EGHWSKECPLDQNGHPRNGSEPNPD-GYDTPKYAGRGKGYHHDFSGDPDHGGGYAAVHGF 224
Query: 239 DR 240
R
Sbjct: 225 SR 226
>gi|111226838|ref|XP_001134599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|90970796|gb|EAS66915.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 737
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 4 PIFVGNFEYETRQSELERLFSKYGR-IERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
IFVGN +T ++E LF Y + IE+VD+K+G+AFV + D ++ L F
Sbjct: 141 TIFVGNLPRDTIVKDIENLFKNYVKSIEKVDIKNGYAFVIVSTN-DPDIVVKELHRKEFL 199
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
+ L+V+ A+ E + +P++ +F++N++ +T DI PYGNV
Sbjct: 200 --NKSLTVQIAKSESK----KKEESEEVKPSRAIFIVNYNVSKTTTNDIADWCSPYGNVN 253
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
V++ +NF FV+FET ++A+KAL++ D ++VEY
Sbjct: 254 RVQMVKNFCFVEFETIDQASKALKALDLKSFDGHSLTVEYV 294
>gi|348544591|ref|XP_003459764.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 419
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 18/157 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T EL LFS+YG+I + F FV+ +D +A +AIR L + +
Sbjct: 4 IFIGNLSPDTTSDELRSLFSQYGKIAECSIVKNFGFVHMDDKTEAEEAIRNLHQ--YELN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE +RG+ R + L V N I ++++ FE +G VL
Sbjct: 62 GQPMNVELSRGK-------------SRGSTKLHVGN---IACTNQELRAKFEEFGTVLEC 105
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +N+AFV E E+A +A+ D + +++SV+
Sbjct: 106 DIVKNYAFVHMERMEDAMEAINQLDNTAFKGKLMSVK 142
>gi|432888898|ref|XP_004075077.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 417
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 37/242 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET EL LFS+YG+I + F FV+ + +A +AIR L + +
Sbjct: 4 IFIGNLAPETTTEELRSLFSQYGKIAECSIVKNFGFVHMDSKAEAEEAIRNLHQ--YELN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE +RG+ R + L V N I ++++ FE +G VL
Sbjct: 62 AQPMNVELSRGK-------------SRGSTKLHVGN---IACTNQELRAKFEEFGAVLEC 105
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +N+AFV E E+A +A+ D + +++SV+ + +R Y +
Sbjct: 106 DIVKNYAFVHMERMEDAMEAINKLDNTAFKGKLMSVKLSTSRLRTAPGMGDRSGCYRCGQ 165
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDY------GRGRSPAYDRYNGPVYDQRRSPDHGRHR 232
G + + P ++ P +Y GR +S AY + G PD+G
Sbjct: 166 EGHWSKECPLDQNGFQRNGSEPKSEYDASGFGGREQSMAYPDFGG-------EPDYGSSF 218
Query: 233 SP 234
+P
Sbjct: 219 AP 220
>gi|346468607|gb|AEO34148.1| hypothetical protein [Amblyomma maculatum]
Length = 338
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ ++VG YE R+ +LER F +GRI + +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MTSRVYVGRLNYEVRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARGERG-----RHRDGSKSMANQR---PTKTLFVINFDPIRTRE--RD 110
D R+SVE ARG R R R S+S +R PT+T + + + + +R +D
Sbjct: 61 LLGD--RVSVELARGIRRGADYYRSRAASRSPPRRRYGPPTRTEYQLTVENLSSRVSWQD 118
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+K + G V + R+RRN V+F T + ALE D + L R I
Sbjct: 119 LKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKNALEKLDNTDLSGRRI 169
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 IFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D+++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSGMCTTE-DLQQLFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV ET+E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMETKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCVNCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPVGK 183
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +FVGN +L++LF +G++ D G+AFV+ E DA AI L F
Sbjct: 82 STKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMETKEDALQAIEALHGTSF 141
Query: 62 GYDRRRLSVEWARGERGRHRDGSK 85
R LSVE ++ + + K
Sbjct: 142 --KGRPLSVELSKVQPSKQTPTGK 163
>gi|427777527|gb|JAA54215.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Rhipicephalus pulchellus]
Length = 363
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ ++VG YE R+ +LER F +GRI + +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MTSRVYVGRLNYEVRERDLERFFKGFGRIREISIKNGFGFVEFDDHRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARGER-----GRHRDGSKSMANQR---PTKTLFVINFDPIRTRE--RD 110
D R+SVE ARG R R R S+S +R PT+T + + + + +R +D
Sbjct: 61 LLGD--RVSVELARGIRRGADYYRSRAASRSPPRRRYGPPTRTEYQLTVENLSSRVSWQD 118
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+K + G V + R+RRN V+F T + AL+ D + L R I
Sbjct: 119 LKDYMRQAGEVTYADAHRLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|268561908|ref|XP_002646556.1| Hypothetical protein CBG20414 [Caenorhabditis briggsae]
Length = 308
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 28/180 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRG 55
S IF+GN + R+ EL+ LFSKYGRI +VD+KSG F FV F D RDA DA+RG
Sbjct: 5 ASDTIFIGNLPGDVREKELDSLFSKYGRINKVDVKSGRGGAAFGFVQFSDSRDADDAVRG 64
Query: 56 LDNIPFGYDRRRLSVEWARG---------------ERG--RHRDG---SKSMANQRPTKT 95
D + +D +R+ VE RG +RG R DG +S R ++
Sbjct: 65 RDG--YDFDGKRIRVELTRGSGPRGPGGRPVRDGYDRGYDRRDDGYGRRQSHGPPRRSEN 122
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKLV 154
+I P +DIK H + G++ + + RN V+FE E+ A++ D +K
Sbjct: 123 RAIIEGLPPTGSWQDIKDHLKSAGDICYADVGRNGDGIVEFEKHEDMKYAIKKFDDTKFT 182
>gi|47209605|emb|CAF93000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET E+ LFS+YG+I + F FV+ +D +A +AIR L + +
Sbjct: 4 IFIGNLASETTSDEIRSLFSQYGKISECTIVKNFGFVHMDDKAEADEAIRNLHQ--YELN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE +RG+ R + L V N I ++++ FE +G V+
Sbjct: 62 GQPMNVELSRGK-------------SRGSTKLHVGN---IACTNQELRAKFEEFGAVVEC 105
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +N+AFV E E+A A+ D + +++SV+ +
Sbjct: 106 DIVKNYAFVHMERMEDAMDAINQLDNTAFKGKLMSVKLS 144
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 IFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFVHLQGEGSAERAIRELNGREF--R 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D+++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSGMCTTE-DLQQLFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV E +E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCVNCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPVGK 183
>gi|197632059|gb|ACH70753.1| zgc:56141-like [Salmo salar]
gi|209155072|gb|ACI33768.1| RNA-binding protein 4B [Salmo salar]
Length = 347
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN E + E++ LFS+YG + + FAFV+ +D + A AIR L +
Sbjct: 4 IFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLHL--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ NQ K L V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASRGK------------NQGAVK-LHVTNVE--KGNDDELRTLFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYG 183
I +NFAFV + +EA A++ D + + I V+ + + E ++ Y P+RGGY
Sbjct: 107 AIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKSRPRYEEEEDYPPPQRGGYW 166
Query: 184 --------RHSPYGRSPSPAYRR 198
RH P P P+Y R
Sbjct: 167 PPRGYPGERHDP----PPPSYLR 185
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 32/250 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN E Q EL+ LF ++GR+ D+ + FV+ +D + A +A+R L++ +
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ + L V N T E +++ FE YG VL
Sbjct: 62 NVSINVEHSRGK-------------PNASTKLHVSNLSSSCTSE-ELRAKFEEYGAVLEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E EA A+++ D ++ + + V+ + ER Y +
Sbjct: 108 DIVKDYAFVHMEISAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGERTRCYRCGK 167
Query: 179 RGGYGRHSPYGRSP-----SPAYRRRPSPD-YGRGRSPAYDRYNGPVYDQRRSPDHGRHR 232
G + + P + P Y PD YG RS AY Y QR D G
Sbjct: 168 EGHWSKECPLDQMAKELEQEPGYPPESFPDPYGPMRSAAYRT----AYAQRVFYDEGERF 223
Query: 233 SPVPVYDRRR 242
S V Y R R
Sbjct: 224 SIVDYYQRYR 233
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V N EL F +YG + D+ +AFV+ E +A DAI+ LDN F
Sbjct: 77 STKLHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEF 136
Query: 62 GYDRR-------RLSVEWARGERGR 79
R RL V GER R
Sbjct: 137 KGKRMHVQLSTSRLRVTPGMGERTR 161
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 41/287 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T E+ LFS+YG+I D+ F FV+ + +A +AI+ L + + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--YMLN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++G+ + + L V N T + +++ FE YG V+
Sbjct: 62 GMAMNVEMSKGK-------------PKTSTKLHVGNISSSCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D + +++SV+ + ER Y +
Sbjct: 108 DIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQ 167
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSP--------DYGRGRSPAYDR-YNG-PVYDQRRSPDH 228
G + + P ++ S YR PS D G R + R ++G P Y +P H
Sbjct: 168 EGHWSKECPLDQNGS--YREGPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSH 225
Query: 229 GRHRS---PVPVYDR----RRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
G R VP Y R + YG G S +PV S
Sbjct: 226 GFTRGAGYAVPGYGRGAGFESAMGYGMPAGYGVGADNSMAPVYGSEA 272
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AI GLDN F
Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136
>gi|330801718|ref|XP_003288871.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
gi|325081064|gb|EGC34594.1| hypothetical protein DICPUDRAFT_98159 [Dictyostelium purpureum]
Length = 467
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 98/165 (59%), Gaps = 11/165 (6%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKY-GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
++ +FVGN + ++E +F + +I ++D+K+G+AFV + D+ ++ LD
Sbjct: 69 NQTVFVGNLPKDVTFKDIENIFRDHVKKIGKIDIKNGYAFVVVNKE-DSDRCVKELDGKE 127
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
F +++L+++ A+GE ++G+K +RP +F++N++ ++T I + +P+G
Sbjct: 128 FF--KKQLTIQLAKGEC--KKEGNKP---RRPCPAIFIVNYNVLKTTINLIIKLCQPHGV 180
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYAL 164
+ +++ +N+ FV+F + EATKAL + K+VD ++VEY
Sbjct: 181 INRIQMVKNYCFVEFSSTIEATKALNYLN-YKIVDGHTLTVEYVC 224
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSSMCTTE-DLQELFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV E +E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCVSCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPAGK 183
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +FVGN +L+ LF +G++ D G+AFV+ E+ DA AI L F
Sbjct: 82 STKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF 141
Query: 62 GYDRRRLSVEWAR 74
R LSVE ++
Sbjct: 142 --KGRPLSVELSK 152
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSSMCTTE-DLQELFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV E +E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQTPTGKIPCVSCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPAGK 183
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +FVGN +L+ LF +G++ D G+AFV+ E+ DA AI L F
Sbjct: 82 STKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF 141
Query: 62 GYDRRRLSVEWAR 74
R LSVE ++
Sbjct: 142 --KGRPLSVELSK 152
>gi|221222294|gb|ACM09808.1| RNA-binding protein 4B [Salmo salar]
Length = 229
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN E + E++ LFS+YG + + FAFV+ +D + A AIR L +
Sbjct: 4 IFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLH--LYKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ NQ K L V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASRGK------------NQGAVK-LHVTNVE--KGNDDELRTLFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKDDSERDDRYDSPRRGGYG 183
I +NFAFV + +EA A++ D + + I V+ + + E ++ Y P+RGGY
Sbjct: 107 AIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKSRPRYEEEEDYPPPQRGGYW 166
Query: 184 --------RHSPYGRSPSPAYRR 198
RH P P P+Y R
Sbjct: 167 PPRGYPGERHDP----PPPSYLR 185
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D+++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSGMCTTE-DLQQLFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV E +E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTGKIPCVNCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPVGK 183
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +FVGN +L++LF +G++ D G+AFV+ E+ DA AI L F
Sbjct: 82 STKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF 141
Query: 62 GYDRRRLSVEWARGERGRHRDGSK 85
R LSVE ++ + + K
Sbjct: 142 --KGRPLSVELSKVQPSKQAPTGK 163
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN +T Q EL +F YG++ + FAFV+ + + A AIR L+ F
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--R 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R L VE +RG R H + +FV N + T E D+++ F+ +G VL
Sbjct: 67 GRNLVVEESRG-RPLH------------STKVFVGNLSGMCTTE-DLQQLFQTFGKVLEC 112
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSP-----RR 179
+ +AFV E +E+A +A+E+ + R +SVE + S++ P ++
Sbjct: 113 DKVKGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQAPTGKIPCVNCGKQ 172
Query: 180 GGYGRHSPYGR 190
G Y P G+
Sbjct: 173 GHYAGECPVGK 183
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +FVGN +L++LF +G++ D G+AFV+ E+ DA AI L F
Sbjct: 82 STKVFVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF 141
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINF 101
R LSVE ++ + + Q PT + +N
Sbjct: 142 --KGRPLSVELSKVQPSK----------QAPTGKIPCVNC 169
>gi|241574282|ref|XP_002403075.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502148|gb|EEC11642.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 364
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 15/171 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ ++VG Y+ R+ +LER F +GRI + +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MTSRVYVGRLNYDVRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKD 60
Query: 61 FGYDRRRLSVEWARGERG-----RHRDGSKSMANQR---PTKTLFVINFDPIRTRE--RD 110
D R+SVE ARG R R R + S +R PT+T + + + + +R +D
Sbjct: 61 LMGD--RVSVELARGIRRGADYYRSRSTAPSPPRRRYGPPTRTEYQLTVENLSSRVSWQD 118
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+K + G V + ++RRN V+F T + AL+ D + L R I
Sbjct: 119 LKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|442754133|gb|JAA69226.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 363
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 15/171 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ ++VG Y+ R+ +LER F +GRI + +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MTSRVYVGRLNYDVRERDLERFFKGFGRIREISIKNGFGFVEFDDPRDADDAVYELNGKD 60
Query: 61 FGYDRRRLSVEWARGERG-----RHRDGSKSMANQR---PTKTLFVINFDPIRTRE--RD 110
D R+SVE ARG R R R + S +R PT+T + + + + +R +D
Sbjct: 61 LMGD--RVSVELARGIRRGADYYRSRSTAPSPPRRRYGPPTRTEYQLTVENLSSRVSWQD 118
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+K + G V + ++RRN V+F T + AL+ D + L R I
Sbjct: 119 LKDYMRQAGEVTYADAHKLRRNEGVVEFATYSDMKNALDKLDNTDLSGRRI 169
>gi|387219571|gb|AFJ69494.1| splicing factor, arginine/serine-rich 1/9 [Nannochloropsis gaditana
CCMP526]
Length = 277
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 9/159 (5%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRG 55
MS I+VGN + R+ +L+ LF KYGRI +D+K +AFV FED RDA DA+
Sbjct: 1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHY 60
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
DN + +D R+ VE A E R RD + T ++ P RT +D+K +F
Sbjct: 61 RDN--YDFDGGRIRVELAN-ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKDYF 117
Query: 116 EPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKL 153
+P G+VL+ + RN V+F T+E+ A D S
Sbjct: 118 KPVGDVLYADVSRNGEGVVEFATKEDMFAAKRKLDGSTF 156
>gi|33146854|dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]
Length = 362
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAIRG
Sbjct: 72 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGR 131
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------QRPTKTLFVINFDPIRTRERD 110
D + +D RL VE A G RG + S R T+ ++ P +D
Sbjct: 132 DG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 189
Query: 111 IKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+K H G+V + + R V + ++ A+ D S+
Sbjct: 190 LKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEF 236
>gi|41054387|ref|NP_955999.1| RNA-binding protein 4.1 [Danio rerio]
gi|28277979|gb|AAH46057.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 123/287 (42%), Gaps = 41/287 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T E+ LFS+YG+I D+ F FV+ + +A +AI+ L + + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--YMLN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++G K + +P V N T + +++ FE YG V+
Sbjct: 62 GMAMNVEMSKG---------KPKTSTKP----HVGNISSSCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D + +++SV+ + ER Y +
Sbjct: 108 DIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQ 167
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSP--------DYGRGRSPAYDR-YNG-PVYDQRRSPDH 228
G + + P ++ S YR PS D G R + R ++G P Y +P H
Sbjct: 168 EGHWSKECPLDQNGS--YREGPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSH 225
Query: 229 GRHRS---PVPVYDR----RRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
G R VP Y R + YG G S +PV S
Sbjct: 226 GFTRGAGYAVPGYGRGAGFESAMGYGMPAGYGVGADNSMAPVYGSEA 272
>gi|115474019|ref|NP_001060608.1| Os07g0673500 [Oryza sativa Japonica Group]
gi|113612144|dbj|BAF22522.1| Os07g0673500 [Oryza sativa Japonica Group]
Length = 296
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAIRG
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------QRPTKTLFVINFDPIRTRER 109
D + +D RL VE A G RG + S R T+ ++ P +
Sbjct: 65 RDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R V + ++ A+ D S+
Sbjct: 123 DLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEF 170
>gi|222637670|gb|EEE67802.1| hypothetical protein OsJ_25544 [Oryza sativa Japonica Group]
Length = 338
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAIRG
Sbjct: 72 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGR 131
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------QRPTKTLFVINFDPIRTRERD 110
D + +D RL VE A G RG + S R T+ ++ P +D
Sbjct: 132 DG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 189
Query: 111 IKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+K H G+V + + R V + ++ A+ D S+
Sbjct: 190 LKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEF 236
>gi|410906739|ref|XP_003966849.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 343
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET + E+E LF +YG + +AFV+ ED + A AIR L +
Sbjct: 4 IFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKL--N 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R ++VE +RG+ +Q P K + + N + + +++++ FE YG V
Sbjct: 62 GRPINVELSRGK-----------GHQGPVK-IHIANVE--KGFDKELRELFEEYGTVSEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
I +NFAFV EEA A++ D S+ + I V+
Sbjct: 108 AIVKNFAFVHMPNSEEAMDAIQGLDNSEFQGKRIHVQ 144
>gi|47086959|ref|NP_998482.1| uncharacterized protein LOC406277 [Danio rerio]
gi|45595715|gb|AAH67153.1| Zgc:56141 [Danio rerio]
Length = 341
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + EL+ LFS+YG + + FAFV+ +D + A AI+ L +
Sbjct: 4 IFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHL--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ NQ P K L V N + + + +++ FE YG V
Sbjct: 62 GTPINVEASRGK------------NQGPVK-LHVANVE--KGTDDELRALFEDYGTVAEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
I +NFAFV +EA A++ D ++ + I V+ + +D Y P G
Sbjct: 107 AIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRGEEDDYGHPDAG 162
>gi|215741122|dbj|BAG97617.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAIRG
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------QRPTKTLFVINFDPIRTRER 109
D + +D RL VE A G RG + S R T+ ++ P +
Sbjct: 65 RDG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R V + ++ A+ D S+
Sbjct: 123 DLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEF 170
>gi|209155952|gb|ACI34208.1| RNA-binding protein 4B [Salmo salar]
Length = 345
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN E + E+E LF+++G + +AFV+ +D + A AIR L F
Sbjct: 4 IFIGNLPNEVEKDEIEALFTEHGTVTECAKFKNYAFVHMDDRKSATKAIRSLHL--FKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R ++VE +RG+ NQ P K L V N + + +++ FE YG V
Sbjct: 62 GRPINVEPSRGK------------NQGPVK-LHVANVE--KGNGDELRTLFEEYGTVTEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR-RGGY 182
I +NFAF+ +EA A++ D + + I V+ + ++ Y P RGGY
Sbjct: 107 AIIKNFAFIHMSNSDEAKDAIKGLDNTDFQGKRIHVQMSKSRPRGEEEDYGPPLDRGGY 165
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN EL LF KYG++ D+ + FV+ + +A +AI+ L+
Sbjct: 4 IFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEAEEAIKNLNQHQL--H 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R++VE ++G + T L V N T + ++ F+ +G V+
Sbjct: 62 GWRMNVELSKGR-------------PKSTTKLHVSNLGEGVTSDV-LRARFQEFGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+E D + +++SV+ + Y +
Sbjct: 108 DIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGMGSHTGCYVCGK 167
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYN 216
G + + P GR+ R R RG PAYDR N
Sbjct: 168 HGHWSKDCPVGRNSGDGARSRSGRVPSRG-PPAYDRGN 204
>gi|428183363|gb|EKX52221.1| hypothetical protein GUITHDRAFT_41825, partial [Guillardia theta
CCMP2712]
Length = 195
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E LF KYGRI +++K+ FAFV FED RDA DAIRG D I
Sbjct: 1 IYVGNLPLDIRTRDIEDLFYKYGRIRDIEVKTPNRPPAFAFVSFEDYRDAEDAIRGRDGI 60
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
F R R + G RG + + + +R + V N P + + D+K HF G
Sbjct: 61 SFEGARLRCEMSRGNGPRGSRQQPRRDL--RRSDYRVIVSNLPPSASWQ-DLKDHFRQVG 117
Query: 120 NVLHVRIRRNF----AFVQFET---QEEATKALESTDRSKLVDRV 157
V++ + R+ V+F + QE A K L+ T+ D+V
Sbjct: 118 EVVYTDVDRSLKSSGGIVEFASRSEQEAAIKQLDDTEFKNPFDKV 162
>gi|294461876|gb|ADE76495.1| unknown [Picea sitchensis]
Length = 149
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 79/144 (54%), Gaps = 33/144 (22%)
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSPRRGG--YGRH---------------------SP 187
SK++DR I+VEYA ++D R SP RGG YGR SP
Sbjct: 2 SKILDREITVEYAQREDGNRRGGRSSPIRGGGRYGRSAEDRGRDRSASPIYGRRAMRGSP 61
Query: 188 -YGRSPSPAYRRRP---SPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPV-PVYDRRR 242
YGR+PSP Y RRP SPDYGR SP Y R G RRSPD+ R SPV R+
Sbjct: 62 DYGRAPSPIYSRRPERRSPDYGRAPSPIYSRRQG-----RRSPDYARDASPVYASRPRKN 116
Query: 243 SPDYGRNRSPNFGRYRSRSPVRRS 266
SPDYGR+ SP R RSRSPVRRS
Sbjct: 117 SPDYGRDPSPIHERDRSRSPVRRS 140
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T + +++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + S YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRTGRVADFAEQYSDQYGAVRAPYSTAYGESVY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|268563921|ref|XP_002647045.1| C. briggsae CBR-RSP-3 protein [Caenorhabditis briggsae]
Length = 234
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDN 58
+ ++VGN + R E+E +F KYGRI+ +D+KSG FAF+ FED+RDA DA+R D
Sbjct: 8 QKVYVGNLPADVRDKEVEDIFHKYGRIKYIDVKSGRGPAFAFIEFEDNRDAEDAVRARDG 67
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
F D RR+ VE+ RG R G + + ++ T+ + +D+K H
Sbjct: 68 YEF--DGRRIRVEFTRGVGPR---GPVAQSTRKEVATVEAVTIVEDVVVVKDLKDHMREA 122
Query: 119 GNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + + R+ V+F ++ A+ D +K
Sbjct: 123 GDVCYADVARDGTGVVEFTRYDDVKYAIRKLDDTKF 158
>gi|218200241|gb|EEC82668.1| hypothetical protein OsI_27298 [Oryza sativa Indica Group]
Length = 321
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAIRG
Sbjct: 72 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAEDAIRGR 131
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------QRPTKTLFVINFDPIRTRERD 110
D + +D RL VE A G RG + S R T+ ++ P +D
Sbjct: 132 DG--YNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHTEYRVLVTGLPSSASWQD 189
Query: 111 IKRHFEPYGNVLHVRI 126
+K H G+V+ ++
Sbjct: 190 LKDHMRNAGDVVTLKC 205
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGESVY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|357516353|ref|XP_003628465.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522487|gb|AET02941.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 326
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 32 SRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGR 91
Query: 57 DNIPFGYDRRRLSVEWARGERGR--HRDGSKSMANQRPTKTL-------FVINFDPIRTR 107
D + +D RL VE A G RG RD S +N R + + ++N P
Sbjct: 92 DG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSAS 149
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K H G+V ++ R V + ++ A++ D S+ +
Sbjct: 150 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVR 209
Query: 164 LKD-DSERDDRYDSPRRG 180
+++ DS RD R SP RG
Sbjct: 210 VREYDSRRDSR--SPGRG 225
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGDSLY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|328770953|gb|EGF80994.1| hypothetical protein BATDEDRAFT_36927 [Batrachochytrium
dendrobatidis JAM81]
Length = 246
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 7/159 (4%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G + + E+ERL ++GRI V +GFAFV + D RDA D +R LD YD
Sbjct: 8 VYIGRLPRDITEREVERLAREFGRIRDVRCLNGFAFVEYSDSRDARDCVRELDG--SRYD 65
Query: 65 RRRLSVEWAR-GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
R RLSV+ A+ G R R S S+ R V+ P RT +D+K F G+V+
Sbjct: 66 RERLSVQPAKSGSDRRDRPASSSL---RRGDYGIVVQGLPARTSWQDLKDLFRKVGDVIF 122
Query: 124 VRIRRNF-AFVQFETQEEATKALESTDRSKLVDRVISVE 161
I + V+F ++ + A+E D+++ VISV+
Sbjct: 123 TNIDNSGDGIVEFTSETDKNSAIEQFDKTEFQGAVISVK 161
>gi|326433655|gb|EGD79225.1| splicing factor [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R I+VGN Y+ R+ E++ LF K+GRIE + +K +AFV FED RDA DA+R D FG
Sbjct: 4 RRIYVGNLPYDIREREIDDLFYKFGRIEEITIKGPYAFVSFEDSRDAEDAVRRRDGYEFG 63
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
RL VE+A G GR G+++ Q L V N P +D+K G VL
Sbjct: 64 GG--RLRVEFANG--GRRERGARAFNGQHSEFRLRVSNL-PRTASWQDVKDFCREAGEVL 118
Query: 123 HVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+ + V+F +++ AL + + KL
Sbjct: 119 FAEVFHDGTGLVEFRREDDMEWALRNLNERKL 150
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N ET E LFSKYG++ ++ GF FV FE+ DAA A+ L+
Sbjct: 223 IYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELN 282
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
F + L V A+ + R ++ K R K LF+ N D E+
Sbjct: 283 GSQF--KDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFIKNLDDSIDDEK- 339
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F PYGN+ VR+ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 340 LKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 399
Query: 164 LKDDSER 170
+ D R
Sbjct: 400 QRKDVRR 406
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIR 54
S IF+ N + L FS +G I + + GF FV+FEDD A +AI
Sbjct: 127 SANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAID 186
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
L+ + + +R ER + SK+ ++V N + + T + +
Sbjct: 187 ALNGMLLNGQEIFVGPHLSRKERDSQLEESKA-----NFTNIYVKNIN-LETTDEEFTEL 240
Query: 115 FEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F YG VL + + F FV FE E+A KA+E + S+ D+ + V A K
Sbjct: 241 FSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQK 298
>gi|357511267|ref|XP_003625922.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355500937|gb|AES82140.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 401
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 107 SRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGR 166
Query: 57 DNIPFGYDRRRLSVEWARGERGR--HRDGSKSMANQRPTKTL-------FVINFDPIRTR 107
D + +D RL VE A G RG RD S +N R + + ++N P
Sbjct: 167 DG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSAS 224
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K H G+V ++ R V + ++ A++ D S+ +
Sbjct: 225 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVR 284
Query: 164 LKD-DSERDDRYDSPRRG 180
+++ DS RD R SP RG
Sbjct: 285 VREYDSRRDSR--SPGRG 300
>gi|357516355|ref|XP_003628466.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522488|gb|AET02942.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 329
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 32 SRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGR 91
Query: 57 DNIPFGYDRRRLSVEWARGERGR--HRDGSKSMANQRPTKTL-------FVINFDPIRTR 107
D + +D RL VE A G RG RD S +N R + + ++N P
Sbjct: 92 DG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSAS 149
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K H G+V ++ R V + ++ A++ D S+ +
Sbjct: 150 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVR 209
Query: 164 LKD-DSERDDRYDSPRRG 180
+++ DS RD R SP RG
Sbjct: 210 VREYDSRRDSR--SPGRG 225
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T + +++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESVY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|291190904|ref|NP_001167419.1| RNA-binding protein 4 [Salmo salar]
gi|223648750|gb|ACN11133.1| RNA-binding protein 4 [Salmo salar]
Length = 316
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 17/171 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T +SEL LF KYG++ D+ + FV+ ++ +A A+ L +
Sbjct: 4 IFVGNVNSSTTESELRTLFEKYGQVSDCDILKNYGFVHMNEEEEAQKAVAELHKHEL--N 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R++VE+A R ++V N P T I+ F+P+G V+
Sbjct: 62 GARITVEFA-------------TTKVRNATKIYVGNV-PEGTTAAKIRELFQPFGKVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 175
I +NFAFV + + EA +A+ + SK+ + I V + +++ R+ R D
Sbjct: 108 DIVKNFAFVHMQRENEAYEAISKLNHSKMEGQKIFVSIS-RNNQARNGRGD 157
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRSGRVADLTEQYNEQYGAVRTPYAMGYGESVY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +++GN + EL+ LFS+YG + + FAFV+ +D + A AI+ L +
Sbjct: 73 SGCLYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLH--LY 130
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
++VE +RG+ NQ P K L V N + + + +++ FE YG V
Sbjct: 131 KLHGTPINVEASRGK------------NQGPVK-LHVANVE--KGTDDELRALFEDYGTV 175
Query: 122 LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
I +NFAFV +EA A++ D ++ + I V+ + +D Y P G
Sbjct: 176 AECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRGEEDDYGHP-DAG 234
Query: 182 YGRHSPYGRSPSPAY 196
Y H P + P+
Sbjct: 235 YWPHPPLDPALQPSL 249
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|326490421|dbj|BAJ84874.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326522680|dbj|BAJ88386.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAI+G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIQGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMANQRPTKTLFVINFDPIRTRER 109
D + +D RL VE A G R H G + R T+ ++ P +
Sbjct: 66 DG--YNFDGNRLRVELAHGGRANSSSLPNSHGGGGRRGGVSRHTEYRVLVTGLPSSASWQ 123
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R V + ++ A+ D ++
Sbjct: 124 DLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDTEF 171
>gi|168043399|ref|XP_001774172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674440|gb|EDQ60948.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E +F KYGRI +D+K G+ F+ FED RDA DAIRG
Sbjct: 6 SRTIYVGNLPGDVREREIEDIFYKYGRIVDIDLKLPPRPPGYCFLEFEDARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG G ++ R ++ ++ P
Sbjct: 66 DG--YNFDGNRLRVEIAHGGRGPPPAVDRSAAESGGRAGGVSRRSEYRVMVTGLPSSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V F ++ A+ D S+
Sbjct: 124 QDLKDHMRRAGDVCFAQVFRDAGTMGIVDFTNYDDMKYAIRKLDDSEF 171
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN E QSEL+ LF ++GR+ D+ + FV+ ED + A +A+ L++ +
Sbjct: 4 LFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ + + L V N T E +++ FE YG VL
Sbjct: 62 SVPINVEHSRGK-------------PKASTKLHVSNLSTSCTSE-ELRAKFEEYGAVLEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E EA A+++ D ++ + + V+ + ER Y +
Sbjct: 108 DIVKDYAFVHMERSAEALDAIKNLDNTEFKGKRMHVQLSTSRLRVTPGMGERTRCYRCGK 167
Query: 179 RGGYGRHSPYGRSP-----SPAYRRRPSPD-YGRGRS 209
G + + P + +P Y PD YG RS
Sbjct: 168 EGHWSKECPLDQMTKELEQAPGYPPESFPDPYGPMRS 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V N EL F +YG + D+ +AFV+ E +A DAI+ LDN F
Sbjct: 77 STKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLDNTEF 136
Query: 62 GYDRRRLSVEWAR-------GERGR 79
R + + +R GER R
Sbjct: 137 KGKRMHVQLSTSRLRVTPGMGERTR 161
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|357516357|ref|XP_003628467.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522489|gb|AET02943.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 347
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 32 SRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGR 91
Query: 57 DNIPFGYDRRRLSVEWARGERGR--HRDGSKSMANQRPTKTL-------FVINFDPIRTR 107
D + +D RL VE A G RG RD S +N R + + ++N P
Sbjct: 92 DG--YDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSAS 149
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K H G+V ++ R V + ++ A++ D S+ +
Sbjct: 150 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVR 209
Query: 164 LKD-DSERDDRYDSPRRG 180
+++ DS RD R SP RG
Sbjct: 210 VREYDSRRDSR--SPGRG 225
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-MELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTVGYGESVY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|55792397|gb|AAV65309.1| splicing factor SF2-like protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAI+G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIQGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMANQRPTKTLFVINFDPIRTRER 109
D + +D RL VE A G R H G + R T+ ++ P +
Sbjct: 66 DG--YNFDGNRLRVELAHGGRANSSSLPNSHGGGGRRGGVSRHTEYRVLVTGLPSSASWQ 123
Query: 110 DIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEATKALESTD 149
D+K H G+V + R + ++ + A + L+ T+
Sbjct: 124 DLKDHMRKAGDVCFSEVYREVVGTIGIVDYTNYDDMKYAIRKLDDTE 170
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRSGRVADLTEQYNEQYGAVRTPYAMSYGDSLY 210
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRTKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRTKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|348544593|ref|XP_003459765.1| PREDICTED: RNA-binding protein 4.1-like [Oreochromis niloticus]
Length = 380
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN EL LF KYG++ D+ + FV+ + +A +AI+ L
Sbjct: 4 IFIGNLACNATAEELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLHQHQL--H 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R++VE ++G + T L V N T E ++ FE +G V+
Sbjct: 62 GWRMNVEMSKGR-------------PKSTTKLHVSNLGEGVTSEV-LRARFEEFGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ + D + +++SV+ + + +
Sbjct: 108 DIVKDYAFVHMERVEDAMEAISNLDNTAFKGKLMSVQLSTSRLRTAPGMGNHTGCFVCGK 167
Query: 179 RGGYGRHSPYGRSPS------------PAYRRRPSPDYGRGRSPAYDRYNGPVYDQ 222
G + + P GR+ S P + YG A D GP Y Q
Sbjct: 168 HGHWSKDCPVGRNGSYSDSMRGHGAWAPPHDPPSYGSYGMASPAAADYMGGPAYSQ 223
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + F + ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPACTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPACTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P R+ A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P R+ A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|91088839|ref|XP_970745.1| PREDICTED: similar to lark CG8597-PA [Tribolium castaneum]
gi|270012337|gb|EFA08785.1| hypothetical protein TcasGA2_TC006476 [Tribolium castaneum]
Length = 358
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++L LF KYG++ D+ + FV+ E++ + +AI+ L+
Sbjct: 12 IFIGNLAEKTAVTDLRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
L+ + + E + R A Q PT +FV N T+ I+ F+ YG V+
Sbjct: 66 -HMLNGQPMKCEAAKSRK-----APQTPTTKIFVGNLTD-NTKAPQIRELFKKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER------DDRYDSPR 178
I RN+ FV E+ + +A++ + + + + + V+ + +R + Y R
Sbjct: 119 DIVRNYGFVHLESSGDVNEAIKELNGTLVDGQPMKVQVSTSRVRQRPGMGDPEQCYRCGR 178
Query: 179 RGGYGRHSPYGRSP 192
G + + P G P
Sbjct: 179 GGHWSKECPKGMGP 192
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGWYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 333 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 390
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 391 GVNINVEASK--------------NKSKTSTKLHVGNISPTCT-NKELRAKFEEYGPVIE 435
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 436 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 495
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 496 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 539
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 406 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 465
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 466 QGKRMHVQLSTSR 478
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL LF + GR+ D+ +AFV+ E + DA AI
Sbjct: 38 MSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 97
Query: 54 RGLDN 58
L+
Sbjct: 98 AQLNG 102
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YGR+ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N T +++ FE YG VL
Sbjct: 62 GVCINVEASK---------NKSKASTK----LHVGNISTGCTN-LELRFKFEEYGPVLEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDKSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPS-PAYRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ P S YG R+P Y PVY
Sbjct: 168 EGHWSKECPVDRTGQVPELTETYSEQYGVVRTPYPTGYGDPVY 210
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISTGCTNLELRFKFEEYGPVLECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R R+ + +R
Sbjct: 137 QGKRMRVQLSTSR 149
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|298710995|emb|CBJ32302.1| arginine/serine-rich splicing factor 6 [Ectocarpus siliculosus]
Length = 235
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ I++G+ TR +L+R F +YGRIE++D++ GFAF+ FED RDA DA+ +D
Sbjct: 1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGRE 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
F D R+ V+ RG HR A +R + V D T +D+K G
Sbjct: 61 F--DGARIVVQPGRG----HRPNGPKFATRRTEHRITVEGLDS-HTSWQDLKDFGRQAGQ 113
Query: 121 VLH----VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
VL+ R R + V++ ++++ A+ + D ++L + I V
Sbjct: 114 VLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRV 157
>gi|125977312|ref|XP_001352689.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
gi|54641438|gb|EAL30188.1| GA21193 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ +EL LF KYG + D+ + FV+ E ++ DAI+ L+ + +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNG--YVLN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A+ R A PT +FV N +TR +++ F+ YG V+
Sbjct: 67 DNAIKVEAAKSRR----------APNTPTTKIFVGNLTD-KTRAPEVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV + + A++ + ++VD
Sbjct: 116 DIVRNYGFVHLDCVGDVQDAIKELN-GRVVD 145
>gi|17647581|ref|NP_523957.1| lark, isoform A [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| lark, isoform B [Drosophila melanogaster]
gi|24659971|ref|NP_729238.1| lark, isoform C [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| lark, isoform D [Drosophila melanogaster]
gi|24659981|ref|NP_729240.1| lark, isoform E [Drosophila melanogaster]
gi|62510825|sp|Q94901.1|LARK_DROME RecName: Full=RNA-binding protein lark
gi|1518654|gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| lark, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila melanogaster]
gi|23094008|gb|AAN12053.1| lark, isoform B [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| lark, isoform C [Drosophila melanogaster]
gi|23094010|gb|AAN12055.1| lark, isoform D [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| lark, isoform E [Drosophila melanogaster]
gi|220946850|gb|ACL85968.1| lark-PA [synthetic construct]
gi|220956448|gb|ACL90767.1| lark-PA [synthetic construct]
Length = 352
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ +EL LF KYG + D+ + FV+ E ++ DAI+ L+ + +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNG--YTLN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A+ R A PT +FV N +TR +++ F+ YG V+
Sbjct: 67 EFAIKVEAAKSRR----------APNTPTTKIFVGNLTD-KTRAPEVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV + + A++ + ++VD
Sbjct: 116 DIVRNYGFVHLDCVGDVQDAIKELN-GRVVD 145
>gi|332377011|gb|AEE63645.1| unknown [Dendroctonus ponderosae]
Length = 356
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 19/194 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN +T SEL LF KYG++ D+ + FV+ E++ + +AI+ L+
Sbjct: 12 IFVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFVHMENESEGREAIQQLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ G+ + A Q PT +FV N T+ I+ F+ +G V+
Sbjct: 66 ------QMINGQSMKCEAAKSRKAPQTPTIKIFVGNLTD-NTKAPQIRELFKKFGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER------DDRYDSPR 178
I RN+ FV E+ + +A++ + + + + V+ + +R + Y R
Sbjct: 119 DIVRNYGFVHLESSGDVNEAIKDLNGQIVDGQPMKVQISTSRVRQRPGMGDPEQCYRCGR 178
Query: 179 RGGYGRHSPYGRSP 192
G + + P G P
Sbjct: 179 GGHWSKECPKGMGP 192
>gi|449279129|gb|EMC86791.1| RNA-binding protein 4, partial [Columba livia]
Length = 250
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + S + + L V N P T +++ FE YG V+
Sbjct: 61 ------------HGVCINVEASKNKSKASTKLHVGNISPACTN-MELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDKSGCYRCGK 167
Query: 179 RGGYGRHSPYGR-SPSPAYRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R P + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRPGQVPDFTEAYTEQYGAVRTPYAAGYGDAVY 210
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPACTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R R+ + +R
Sbjct: 137 QGKRMRVQLSTSR 149
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTDQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN E + E++ LF +YG + D+ FAFV+ ED + A AI+ L
Sbjct: 4 IFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQ--HSLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE + G+ N P K + V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASHGK------------NFGPVK-IHVANVE--KGCDEELRALFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ +NFAFV +EA A++ D S ++ I V+
Sbjct: 107 AVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQ 143
>gi|57164147|ref|NP_001009255.1| serine/arginine-rich splicing factor 9 [Rattus norvegicus]
gi|92058728|sp|Q5PPI1.1|SRSF9_RAT RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|56388745|gb|AAH87684.1| Splicing factor, arginine/serine rich 9 [Rattus norvegicus]
gi|149063569|gb|EDM13892.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Rattus
norvegicus]
Length = 221
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ A G RG S++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|68037673|gb|AAY84884.1| alternative splicing regulator [Triticum aestivum]
Length = 284
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------QRPTKTLFVINFDPIR 105
D + +D RL VE A G R S S+ N R T+ ++ P
Sbjct: 66 DG--YNFDGNRLRVELAHGGRA----NSSSLPNSYGGGGRRGGVSRHTEYRVLVTGLPSS 119
Query: 106 TRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D ++
Sbjct: 120 ASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDTEF 171
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADLTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|432921333|ref|XP_004080106.1| PREDICTED: RNA-binding protein 4.1-like [Oryzias latipes]
Length = 335
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 16/156 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET + E+E LF +YG + +AFV+ +D + A AIR L G
Sbjct: 4 IFIGNLSPETEKEEIEALFREYGAVTECAKYRNYAFVHMDDRKCATKAIRELHLRRVG-- 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R ++VE +RG+ N + L V+N + + E +++ FE YG+V
Sbjct: 62 GRAMNVEPSRGK------------NPQGALKLHVVNVE--KGSESELRELFEEYGSVTEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+ +NFAFV +E AL++ D + I V
Sbjct: 108 AVIKNFAFVHMANYDEGMDALQALDNKDFQGKRIQV 143
>gi|355718943|gb|AES06437.1| splicing factor, arginine/serine-rich 9 [Mustela putorius furo]
Length = 220
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G ++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|57105666|ref|XP_534706.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1 [Canis
lupus familiaris]
Length = 221
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G ++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN Q+EL+ LF ++G++ D+ + +AFV+ ED + A +A+ L+
Sbjct: 4 LFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKL--H 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ R + L V + T + +++ FE YG VL
Sbjct: 62 GVSINVEHSRGK-------------PRASTKLHVSSLSTDCTGD-ELREKFEEYGGVLEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +++AFV E EEA +A+ + + + + + V+ +
Sbjct: 108 DIVKDYAFVHMEKAEEALEAIRNLNNLEFKGKKMHVQLS 146
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V + + EL F +YG + D+ +AFV+ E +A +AIR L+N+ F
Sbjct: 77 STKLHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFVHMEKAEEALEAIRNLNNLEF 136
Query: 62 GYDRRRLSVEWAR 74
+ + + +R
Sbjct: 137 KGKKMHVQLSTSR 149
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRPPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|13385016|ref|NP_079849.1| serine/arginine-rich splicing factor 9 [Mus musculus]
gi|66774167|sp|Q9D0B0.1|SRSF9_MOUSE RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|12847866|dbj|BAB27740.1| unnamed protein product [Mus musculus]
gi|15126569|gb|AAH12217.1| Splicing factor, arginine/serine rich 9 [Mus musculus]
gi|148687919|gb|EDL19866.1| splicing factor, arginine/serine rich 9, isoform CRA_b [Mus
musculus]
Length = 222
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G+++ R + +++ P +D+K H G
Sbjct: 77 DYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 136
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 137 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRMADLTEQYNEQYGAVRAPYAMSYGESMY 210
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|294463259|gb|ADE77165.1| unknown [Picea sitchensis]
Length = 102
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 60/82 (73%), Gaps = 6/82 (7%)
Query: 151 SKLVDRVISVEYALKDDSERDDRYDSP-RRGGYG-RHSP-YGRSPSPAYRR---RPSPDY 204
SKL+DRVISVEYA++DD +R+ + +SP RRGGYG R SP Y RS SP Y R RPSPDY
Sbjct: 2 SKLLDRVISVEYAIRDDDDRNGQRESPGRRGGYGKRVSPAYDRSVSPIYGRQGRRPSPDY 61
Query: 205 GRGRSPAYDRYNGPVYDQRRSP 226
GR SP Y+RY G V D+ SP
Sbjct: 62 GRAPSPIYERYRGSVNDRIHSP 83
>gi|348525823|ref|XP_003450421.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 347
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 20/200 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN T + E+E LF++YG + +AFV+ ED + A AIR L +
Sbjct: 4 IFIGNLSQNTEKDEIEALFTQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKL--N 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R ++VE +R +Q P K L V N + + +++++ F YG V
Sbjct: 62 GRPINVEPSRS------------TDQGPVK-LHVANVE--KGFDKELRDLFLEYGTVTEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL---KDDSERDDRYDSPRRGG 181
I +NFAFV +EA AL+ D ++ + I V+ + + E ++ P RGG
Sbjct: 107 SIVKNFAFVHMSNSDEAMDALQGLDNTEFQGKRIHVQISKSRPRGGPEEEEYPPPPVRGG 166
Query: 182 YGRHSPYGRSPSPAYRRRPS 201
Y G P P YR R S
Sbjct: 167 YFPPRFPGERPEPPYRGRMS 186
>gi|198419269|ref|XP_002128579.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 336
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVG + ++SELE LF YG I + + FV+ D DA AI GLD
Sbjct: 4 IFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+G + S + +FV N P T+ DI + F+ YG V+
Sbjct: 61 ------------KGNSINVELSTTKVQKASKIFVGNLPP-ETKSADIHKLFKKYGTVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ +N+AFV + A A+ + ++ I V+ A
Sbjct: 108 DVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN ET+ +++ +LF KYG + D+ +AFV+ + A DAI GL+N F +
Sbjct: 80 IFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEF--N 137
Query: 65 RRRLSVEWARGERGRHRDGSKSM 87
++ V+ AR +R G M
Sbjct: 138 GNKIGVQMARSQRNLDMHGGPPM 160
>gi|307192389|gb|EFN75624.1| Serine-arginine protein 55 [Harpegnathos saltator]
Length = 313
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 37/193 (19%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV F+D RDA DA+ L+
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARG------------ERGRHRDGSKSMA----NQR------------- 91
+ R++VE ARG RG + D +S N R
Sbjct: 61 LLGE--RITVERARGTPRGSDQWRYGDSRGGYGDSRRSADSVNRNTRTASSYKQSLPRYG 118
Query: 92 -PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKAL 145
PT+T + + + + +R +D+K + G V + + RRN V+F T + A+
Sbjct: 119 PPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDLKNAI 178
Query: 146 ESTDRSKLVDRVI 158
+ D ++L R I
Sbjct: 179 DKLDDTELNGRRI 191
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
R RERD+++ F YG + V ++ FAFV+F+ +A A+ + +L+ I+VE A
Sbjct: 13 RVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERITVERAR 72
Query: 165 KDDSERDDRYDSPRRGGYG 183
D RGGYG
Sbjct: 73 GTPRGSDQWRYGDSRGGYG 91
>gi|74192738|dbj|BAE34886.1| unnamed protein product [Mus musculus]
Length = 222
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 17 IYVGNLPSDVRERDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G+++ R + +++ P +D+K H G
Sbjct: 77 DYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 136
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 137 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + ET Q E E LF KYG+I ++ GF FV FED AA A+ L+
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ F ++L V A+ + R ++ K R K LFV N D E+
Sbjct: 281 ELEF--KGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F P+G + ++ R+ F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSERD 171
+ + R+
Sbjct: 398 QRKEVRRN 405
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I++ N L FS +G I + + GF FV+FE++ DA DAI +D
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ +++ ++ +R + K+ ++V N D T + + + F
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKLEEVKAKFT-----NVYVKNIDQ-ETSQEEFEELFGK 241
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDR 150
YG + + R F FV FE A KA++ +
Sbjct: 242 YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNE 281
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + ET Q E E+LFSKYG+I ++ GF F+ FED AA A+ L+
Sbjct: 221 IYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
F + L V A+ + R ++ K R K LF+ N D E+
Sbjct: 281 ESDF--RGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F P+G + V++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIA 397
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I++ N L FS +G I + + GF FV+FE++ DA DAI ++
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + + V W ++ R SK + ++V N D + T + + ++ F
Sbjct: 188 GMLM--NDQEVYVAWHVSKKDRQ---SKLEEVKAKFTNIYVKNID-LETSQEEFEQLFSK 241
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRS 151
YG + + R F F+ FE A +A++ + S
Sbjct: 242 YGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNES 282
>gi|410976794|ref|XP_003994798.1| PREDICTED: serine/arginine-rich splicing factor 9 [Felis catus]
Length = 340
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 135 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 194
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G ++ R + +++ P +D+K H G
Sbjct: 195 DYGQCRLRVEFPRTYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 254
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 255 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 289
>gi|255646543|gb|ACU23746.1| unknown [Glycine max]
Length = 310
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG H +G R ++ ++ P
Sbjct: 66 DG--YDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGRGVSRRSEYRVLVTGLPSSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A++ D S+
Sbjct: 124 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|357121520|ref|XP_003562467.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 288
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K GFAFV FED RDA DAI G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVEIDLKVPPRPPGFAFVEFEDPRDAEDAIHG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN---------------QRPTKTLFVIN 100
D + +D RL VE A G R S S+ N R T+ ++
Sbjct: 65 RDG--YNFDGNRLRVELAHGGRAN----SSSLPNSYGGGGGGGGRRGGVSRHTEYRVLVT 118
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + R V + ++ A+ D S+
Sbjct: 119 GLPSSASWQDLKDHMRKAGDVCFSEVYREGDGTTGIVDYTNYDDMKYAIRKLDDSEF 175
>gi|47210650|emb|CAF94318.1| unnamed protein product [Tetraodon nigroviridis]
Length = 184
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN ET + E+E LF +YG + +AFV+ ED + A AIR L +
Sbjct: 4 IFIGNLSPETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELH--LHKLN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R ++VE +RG+ + P K + + N + + E++++ FE YG V
Sbjct: 62 GRPINVELSRGK-----------GHMGPVK-IHIANVE--KGFEKELRELFEEYGIVSEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +NFAFV EEA A++ D S+
Sbjct: 108 SIVKNFAFVHMPNSEEAMDAIQGLDNSEF 136
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N P T + +++ F YG V +N+AFV E ++ ATKA+ KL
Sbjct: 4 IFIGNLSP-ETEKDEVEALFVQYGTVTECAKYKNYAFVHMEDRKSATKAIRELHLHKLNG 62
Query: 156 RVISVEYA 163
R I+VE +
Sbjct: 63 RPINVELS 70
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
I +++AFV E E+A +A+ D ++ +S
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGESLS 142
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN--- 58
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 59 ----IPFG--YDRRRLSVEWARGERGRHRDG 83
+ FG R L W R +GR+ DG
Sbjct: 137 QGESLSFGRVLCTRLLGTNWMR--KGRNWDG 165
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVEYALKDDSERDDR 173
I+VE A K+ S+ +
Sbjct: 63 VNINVE-ASKNKSKASTK 79
>gi|356572736|ref|XP_003554522.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 309
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG H +G R ++ ++ P
Sbjct: 66 DG--YDFDGHRLRVEPAHGGRGHSSSKDRHNSHSNGRGGRGVSRRSEYRVLVTGLPSSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A++ D S+
Sbjct: 124 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|325192592|emb|CCA27020.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 347
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
I+VGN + + +LE F K+GRIE +K G+ FV F DD AA+A+R +D+
Sbjct: 4 IYVGNLTSDFDERDLEAGFEKFGRIESCAVKRGYGFVNFRDDHSAAEALREMDDTEL--K 61
Query: 65 RRRLSVEWARG---ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
RR+ V +A R ++ N ++ LFV N P R R+++ FE YG V
Sbjct: 62 GRRIRVAYANSGSYSTTRRERPEQARENGPVSRNLFVANIPP-NVRLRELEEFFERYGKV 120
Query: 122 LHVRIRRNF-------AFVQFETQEEATKA 144
+V+I AFV F T+ EA A
Sbjct: 121 QNVKILPQVKGNVTMSAFVDFSTEAEAESA 150
>gi|302795628|ref|XP_002979577.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
gi|300152825|gb|EFJ19466.1| hypothetical protein SELMODRAFT_36388 [Selaginella moellendorffii]
Length = 236
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E++ LF KYG I +D+K G+ F+ FED RDA DAIRG
Sbjct: 3 SRTIYVGNLPGDVREREIDDLFHKYGPIVDIDLKLPPRPPGYCFIEFEDVRDAEDAIRGR 62
Query: 57 DNIPFGYDRRRLSVEWARGERG-----RHRD-GSKSMANQRPTKTLFVINFDPIRTRERD 110
D + +D RL VE A G RG R+ G + + R ++ +I P +D
Sbjct: 63 DG--YNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRRSEYRVIITGLPSSASWQD 120
Query: 111 IKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+K H G+V ++ R V F ++ A++ D S+
Sbjct: 121 LKDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIKKLDDSEF 167
>gi|148909953|gb|ABR18062.1| unknown [Picea sitchensis]
Length = 331
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+ F+ FED RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYCFIEFEDARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD----------GSKSMANQRPTKTLFVINFDPIRT 106
D + +D RL VE A G RG+ G +S R ++ +++ P
Sbjct: 66 DG--YNFDGNRLRVELAHGGRGQSSTNDRYSSYSSAGGRSGGVSRRSEYRVLVSGLPSSA 123
Query: 107 RERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + ++ A+ D S+
Sbjct: 124 SWQDLKDHMRRAGDVCFSQVFRDSSGTTGIVDYTNYDDMKYAIRKLDDSEF 174
>gi|391330800|ref|XP_003739841.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Metaseiulus
occidentalis]
Length = 303
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG + TR+ +LERLFS YGRI + +KSGFAFV FED RDA DA L+ D
Sbjct: 9 LYVGRLSHRTRERDLERLFSPYGRIREILLKSGFAFVEFEDTRDAEDACYELNGKDLLGD 68
Query: 65 RRRLSVEWARG-ERGRHRDGSKSMANQRPTKTL------------FVINFDPIRTRERDI 111
R+ VE A+G ERGR G M QR + ++ R +D+
Sbjct: 69 --RIVVEMAKGTERGR---GGLPMRGQRDKGWMDKYGPFKRTDYRVIVGNLSTRVSWQDL 123
Query: 112 KRHFEPYG-NVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
K G V + + R+N A ++F T+ + +A++ D ++ R + V
Sbjct: 124 KDMMRKVGCEVCYADAHKHRKNEAVIEFATRSDMKRAIQKYDGHEVNGRKMEV 176
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF-GY 63
IF+GN EL LF KYG++ D+ + FV+ + +A +AI+ L+ G+
Sbjct: 823 IFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKNLNQHQLHGW 882
Query: 64 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
R++VE ++G + T L V N T + ++ FE +G V+
Sbjct: 883 ---RMNVELSKGR-------------PKSTTKLHVSNLGEGVTSDV-LRARFEEFGPVVE 925
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+E D + +++SV+ + Y
Sbjct: 926 CDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGKLMSVQLSTSRLRTAPGMGSHTGCYVCG 985
Query: 178 RRGGYGRHSPYGRS 191
+ G + + P GR+
Sbjct: 986 KHGHWSKDCPVGRN 999
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T + +++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
I +++AFV E E+A +A+ D ++ ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGELL 141
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWARGERG 78
+ + W G R
Sbjct: 137 -----QGELLWGLGSRA 148
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|218188085|gb|EEC70512.1| hypothetical protein OsI_01613 [Oryza sativa Indica Group]
Length = 447
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 81/170 (47%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 195 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAICGR 254
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + G + ++R + V P
Sbjct: 255 DR--YNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYRVMVTGL-PSSAS 311
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + T E+ A+ D S+
Sbjct: 312 WQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSEF 361
>gi|345491212|ref|XP_001603815.2| PREDICTED: serine-arginine protein 55-like isoform 2 [Nasonia
vitripennis]
Length = 364
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 45/201 (22%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV F+D RDA DA+ L+
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARG------------ERGRHRDGSKS----MANQR------------- 91
+ R++VE ARG RG + D +S M + R
Sbjct: 61 LLGE--RITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTTSSY 118
Query: 92 ---------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFET 137
PT+T + + + + +R +D+K + G V + + RRN V+F T
Sbjct: 119 KQSLPRYGPPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFAT 178
Query: 138 QEEATKALESTDRSKLVDRVI 158
+ A+E D ++L R I
Sbjct: 179 YSDLKNAIEKLDDTELNGRRI 199
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
R RERD+++ F YG + V ++ FAFV+F+ +A A+ + +L+ I+VE A
Sbjct: 13 RVRERDLEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERITVERAR 72
Query: 165 KDDSERDDRYDSPRRGGYG 183
D RGGYG
Sbjct: 73 GTPRGSDQWRYGDSRGGYG 91
>gi|356505580|ref|XP_003521568.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
[Glycine max]
Length = 326
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED +DA DAIRG
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG H +G R ++ +++ P
Sbjct: 66 DG--YDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A++ D S+
Sbjct: 124 WQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|242007024|ref|XP_002424342.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
gi|212507742|gb|EEB11604.1| Arginine/serine-rich-splicing factor RSP31, putative [Pediculus
humanus corporis]
Length = 326
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN +T +++++ LF KYG++ D+ + FV+ E + DAI+ LD +
Sbjct: 12 IFVGNLSDKTTKADIQPLFEKYGKVVECDIVKNYGFVHMEHEDSGRDAIQNLDG--YLVH 69
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A +G Q PT +FV N T+ ++ F YG V+
Sbjct: 70 GSSIKVEAATSRKG----------PQTPTTKVFVGNLTD-NTKAPQVRALFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER------DDRYDSPR 178
I RN+ FV E+ + + + + L + + V+ + +R + Y R
Sbjct: 119 DIVRNYGFVHIESSDNVNECIRELNGYILDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGR 178
Query: 179 RGGYGRHSPYGRSP 192
G + + P G P
Sbjct: 179 GGHWSKECPKGGGP 192
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + +T + E LFSKYG I + M+ GF F+ FE+ DAA A+ L+
Sbjct: 233 VYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELN 292
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
++ F ++L V A+ + R ++ K R K LFV N D E+
Sbjct: 293 DLEF--KGQKLYVGRAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEK- 349
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F P+G++ ++ RN F FV F T EEATKA+ ++ + + + V A
Sbjct: 350 LEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 409
Query: 164 LKDDSER 170
+ D R
Sbjct: 410 QRKDVRR 416
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE+D A +A+ ++
Sbjct: 140 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAIN 199
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + R + V ++ R + AN ++V N D + T E + F
Sbjct: 200 GMML--NGREVYVAQHVSKKDRESKLEEVKAN---FTNVYVKNVD-VDTPEDEFTALFSK 253
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 149
YG + + + R F F+ FE ++A KA+E +
Sbjct: 254 YGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELN 292
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG + ++ L +FS G + + G+A+V F D AI
Sbjct: 49 SASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAI 108
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + G+ + +F+ N P + +
Sbjct: 109 EKLNYSPIKGKPCR--IMWSQRDPALRKKGAGN---------IFIKNLHP-DIDNKALHD 156
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L +I + F FV FE A +A+++ + L R + V
Sbjct: 157 TFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYV 210
>gi|427777529|gb|JAA54216.1| Putative alternative splicing factor asf/sf2 [Rhipicephalus
pulchellus]
Length = 308
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 22/171 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +FVG Y+ R+ +LER F YGRIE + +K+GF FV D RDA DA+R L+
Sbjct: 1 MATRVFVGRLNYDVRERDLERFFRGYGRIEDIVLKNGFGFVDISDYRDAEDAVRDLNGKR 60
Query: 61 FGYDRRRLSVEWARG--------ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE--RD 110
+ R++VE ARG +RG R G PT+T + + + + T +D
Sbjct: 61 LMGE--RVTVELARGMRRGPPDYDRGPRRFGP-------PTRTNYQLLVENLSTSVSWQD 111
Query: 111 IKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+K G+V + ++RR+ V+F + + AL S D L R I
Sbjct: 112 LKDFMRQAGDVTYTDAHKLRRHQGVVEFASYSDMKNALRSLDNVSLDGRRI 162
>gi|302791860|ref|XP_002977696.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
gi|300154399|gb|EFJ21034.1| hypothetical protein SELMODRAFT_107678 [Selaginella moellendorffii]
Length = 298
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E++ LF KYG I +D+K G+ F+ FED RDA DAIRG
Sbjct: 5 SRTIYVGNLPGDVREREIDDLFHKYGPIVDIDLKLPPRPPGYCFIEFEDVRDAEDAIRGR 64
Query: 57 DNIPFGYDRRRLSVEWARGERG-----RHRD-GSKSMANQRPTKTLFVINFDPIRTRERD 110
D + +D RL VE A G RG R+ G + + R ++ +I P +D
Sbjct: 65 DG--YNFDGYRLRVEIAHGGRGPPSSDRYSSYGGRGGSVSRRSEYRVIITGLPSSASWQD 122
Query: 111 IKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+K H G+V ++ R V F ++ A++ D S+
Sbjct: 123 LKDHMRRAGDVCFAQVFREGNGTTGIVDFTNYDDMKYAIKKLDDSEF 169
>gi|157822515|ref|NP_001102155.1| splicing factor, arginine/serine-rich 4 [Rattus norvegicus]
gi|149024115|gb|EDL80612.1| similar to Sfrs4 protein (predicted) [Rattus norvegicus]
Length = 488
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|115463447|ref|NP_001055323.1| Os05g0364600 [Oryza sativa Japonica Group]
gi|113578874|dbj|BAF17237.1| Os05g0364600 [Oryza sativa Japonica Group]
Length = 294
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRER 109
+ +D RL VE A G RG D + A +R + V P +
Sbjct: 66 HG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R V + E+ +A+ D S+
Sbjct: 123 DLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEF 170
>gi|218196647|gb|EEC79074.1| hypothetical protein OsI_19658 [Oryza sativa Indica Group]
Length = 328
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 29 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 88
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRER 109
+ + +D RL VE A G RG D + A +R + V P +
Sbjct: 89 NG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQ 145
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R V + E+ +A+ D S+
Sbjct: 146 DLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEF 193
>gi|119594961|gb|EAW74555.1| RNA binding motif protein 4, isoform CRA_b [Homo sapiens]
Length = 315
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|224132592|ref|XP_002321360.1| predicted protein [Populus trichocarpa]
gi|222868356|gb|EEF05487.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI V++K + FV FE+ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPADIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------QRPTKTLFVINFDPI 104
D + +D RL VE A G RG + + R ++ ++ P
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSNDRRGGYGGGGGSGGRFGISRHSEFRVIVRGLPS 122
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R+ F V + E+ A+ D ++
Sbjct: 123 SASWQDLKDHMRKAGDVCFAEVSRDSDGTFGVVDYTNHEDMKYAIRKLDDTEF 175
>gi|119594960|gb|EAW74554.1| RNA binding motif protein 4, isoform CRA_a [Homo sapiens]
Length = 326
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 15 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 72
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 73 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 117
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 118 CDIVKDYAFVHMERAEDAVEAIRGLDNTEF 147
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 88 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 147
>gi|449485688|ref|XP_004157245.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 322
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 91/208 (43%), Gaps = 20/208 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSKSMANQRPTKTLFVINFDPIRTRER 109
D F D RL VE+A G RG R GS R T ++ P +
Sbjct: 66 DGYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSRGGVPRRTDYRVLVTGLPSSASWQ 123
Query: 110 DIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
D+K H G+V + R+ V + ++ A+ D S+ + +K
Sbjct: 124 DLKDHMRRAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVK 183
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPS 193
+ R SP R S Y RSPS
Sbjct: 184 EYDSRHSYSRSPSLD--SRRSDYSRSPS 209
>gi|20978758|sp|Q8VE97.1|SRSF4_MOUSE RecName: Full=Serine/arginine-rich splicing factor 4; AltName:
Full=Splicing factor, arginine/serine-rich 4
gi|18043896|gb|AAH19437.1| Sfrs4 protein [Mus musculus]
Length = 489
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|301790878|ref|XP_002930446.1| PREDICTED: splicing factor, arginine/serine-rich 9-like [Ailuropoda
melanoleuca]
Length = 253
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 48 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 106
Query: 60 PFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ Y + RL VE+ R G G R G +R + V P + + D+K H
Sbjct: 107 -YDYGQCRLRVEFPRTYGGRAGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ-DLKDHMR 164
Query: 117 PYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 165 EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 202
>gi|224164480|ref|XP_002196784.1| PREDICTED: RNA-binding protein 4B-like, partial [Taeniopygia
guttata]
Length = 333
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + S + + L V N P T +++ FE YG V+
Sbjct: 61 ------------HGVCINVEASKNKSKASTKLHVGNISPACTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------LKDDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTVPGMGDKSSCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R A + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRPGQVADFAEAYNEQYGAVRTPYTAGYGETVY 210
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R R+ + +R
Sbjct: 137 QGKRMRVQLSTSR 149
>gi|328716895|ref|XP_001948178.2| PREDICTED: RNA-binding protein lark-like [Acyrthosiphon pisum]
Length = 376
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T S++ LF KYG++ D+ F FV+ +DD AI+ L+ +
Sbjct: 52 IFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALNGSMV--N 109
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A RG + PT +FV N T+E +++ FE YG V+
Sbjct: 110 DLAMKVETATSRRGPN----------TPTTKIFVGNLSET-TKENEVRELFERYGTVVEC 158
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLV 154
I R + FV ++STD S+L+
Sbjct: 159 DIVRTYGFVH----------IDSTDVSRLI 178
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N +T DI+ FE YG V+ + +NF FV + A+++ + S + D
Sbjct: 52 IFIGNLSE-KTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALNGSMVND 110
Query: 156 RVISVEYA 163
+ VE A
Sbjct: 111 LAMKVETA 118
>gi|281340832|gb|EFB16416.1| hypothetical protein PANDA_020890 [Ailuropoda melanoleuca]
Length = 215
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 12/158 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 10 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 68
Query: 60 PFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ Y + RL VE+ R G G R G +R + V P + + D+K H
Sbjct: 69 -YDYGQCRLRVEFPRTYGGRAGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQ-DLKDHMR 126
Query: 117 PYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 127 EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 164
>gi|165377173|ref|NP_065612.2| serine/arginine-rich splicing factor 4 [Mus musculus]
gi|26449170|dbj|BAC36925.1| unnamed protein product [Mus musculus]
gi|74152317|dbj|BAE33925.1| unnamed protein product [Mus musculus]
gi|148698178|gb|EDL30125.1| splicing factor, arginine/serine-rich 4 (SRp75) [Mus musculus]
Length = 491
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|170046272|ref|XP_001850696.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
gi|167869088|gb|EDS32471.1| RNA binding motif protein 4,lark [Culex quinquefasciatus]
Length = 332
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ S+L LF KYG + D+ + FV+ E + DAI+ LD + +
Sbjct: 9 LFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMETEDMGRDAIQNLDG--YVVN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + VE AR R + + +K +FV N + TR ++ F+ YG V+
Sbjct: 67 GKAIKVEAARNRRAPNSNTTK----------IFVGNLTDV-TRAPQVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKAL 145
I RN+ FV + Q + +A+
Sbjct: 116 DIVRNYGFVHLDPQGDVNEAI 136
>gi|256092018|ref|XP_002581797.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
Length = 194
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG------FAFVYFEDDRDAADAIRGLDN 58
I+VGN +T+ ++E LFSKYG I +D+K+G FAFV FED+ DA+DA+RG D
Sbjct: 12 IYVGNLPPDTKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRGRDG 71
Query: 59 IPFGYDRRRLSVEWARG---ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ +D L VE R ER +R G + R + ++ P +D+K H
Sbjct: 72 --YNFDGYALRVELPRTGVPERRFNRGGGGASGPSRRSDFRVIVTGLPPTGSWQDLKDHM 129
Query: 116 EPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + + R+ V+F E+ A+ D SK
Sbjct: 130 REAGDVGYADVFRDGTGVVEFLRYEDMKYAIRRLDDSKF 168
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 87 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------FAFVQFETQEE 140
+ R T ++V N P T+ RDI+ F YG + + ++ FAFV+FE + +
Sbjct: 3 IKMSRTTHKIYVGNLPP-DTKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELD 61
Query: 141 ATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRS 191
A+ A+ D + VE ER R++ RGG G P RS
Sbjct: 62 ASDAVRGRDGYNFDGYALRVELPRTGVPER--RFN---RGGGGASGPSRRS 107
>gi|241159531|ref|XP_002408582.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
gi|215494365|gb|EEC04006.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
Length = 339
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +FVG Y+ R+ +LE+ F YGRI V +K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MTTRVFVGRLNYDVRERDLEKFFKGYGRIGEVLLKNGYGFVEFDDYRDAEDAVHDLNGKK 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQR----PTKT---LFVINFDPIRTRERDIKR 113
+ R+SVE ARG R G ++ R P++T L V N +D+K
Sbjct: 61 LMGE--RISVELARGIRRGPGTGYGGASSSRRYGPPSRTEYQLLVENLSS-SVSWQDLKD 117
Query: 114 HFEPYGNVLHV---RIRRNFAFVQFETQEEATKAL 145
G V + ++RRN V+F T + AL
Sbjct: 118 FMRQAGEVTYTDAHKLRRNEGVVEFATYSDMKNAL 152
>gi|159463554|ref|XP_001690007.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158283995|gb|EDP09745.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 338
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
+FVGN + R+ E+E LF KYGRI VD+K G FAFV FED+RDAADA+RG D I
Sbjct: 6 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPPAFAFVEFEDERDAADAVRGRDGI 65
Query: 60 PFGYDRRRLSVEWAR 74
F R R+ V R
Sbjct: 66 EFQGQRLRVEVSHGR 80
>gi|168000741|ref|XP_001753074.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695773|gb|EDQ82115.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 35/185 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+ F+ FED RDA DAIRG
Sbjct: 6 SRTIYVGNLPGDVREREIEDLFYKYGRIVDIDLKLPPRPPGYCFIEFEDARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG-----------------------RHRDGSKSMANQRPT 93
D + +D RL VE A G RG +G ++ R +
Sbjct: 66 DG--YNFDGNRLRVEIAHGGRGPPPASVDRYSIYSSGGGRGGGGSASENGGRAGGVSRRS 123
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALEST 148
+ + P +D+K H G+V ++ R+ V F ++ A+
Sbjct: 124 EYRVTVTGLPSSASWQDLKDHMRRAGDVCFAQVFRDGSAGTMGIVDFTNYDDMKYAIRKL 183
Query: 149 DRSKL 153
D S+
Sbjct: 184 DDSEF 188
>gi|222631305|gb|EEE63437.1| hypothetical protein OsJ_18250 [Oryza sativa Japonica Group]
Length = 305
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRER 109
+ +D RL VE A G RG D + A +R + V P +
Sbjct: 66 HG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R V + E+ +A+ D S+
Sbjct: 123 DLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEF 170
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET E LF+KYG + ++ GF FV FE DAA A+ L+
Sbjct: 218 VYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELN 277
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
F + L V A+ + R ++ K R K LFV N D E+
Sbjct: 278 GTEF--KDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEK- 334
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F PYG + VR+ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 335 LKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 164 LKDDSER 170
+ D R
Sbjct: 395 QRKDVRR 401
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE + A +AI L+
Sbjct: 125 IFIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALN 184
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ R ER + +K+ ++V N + + T + + F
Sbjct: 185 GMLLNGQEIYVAPHLTRKERDSQLEETKAHFT-----NVYVKNIN-LETTDEEFNELFAK 238
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
YGNVL + + F FV FE E+A KA+E + ++ D+ + V A K
Sbjct: 239 YGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQK 293
>gi|449436495|ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
gi|449498497|ref|XP_004160553.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 309
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYGRI +D+K G+AFV FED DA DAIRG
Sbjct: 6 SRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL---------FVINFDPIRTR 107
D + +D RL VE A G RG + ++ ++ P
Sbjct: 66 DG--YDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPSSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + ++ A++ D S+
Sbjct: 124 WQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|148908052|gb|ABR17145.1| unknown [Picea sitchensis]
Length = 263
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
M+R ++VGN + R+ E+E LF KYGRI VD+K G+ F+ FED RDA DAIRG
Sbjct: 5 MTRTLYVGNLPGDVREGEIEDLFYKYGRIIDVDLKVPPRPPGYCFIEFEDARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGS-------KSMAN--------QRPTKTLFVIN 100
D + +D R+ VE+A G GR S S+A R T ++
Sbjct: 65 RDG--YNFDGHRIRVEFAHG--GRRTSSSLGRPSSYSSIAGGRGGRGGVTRHTDYRVLVT 120
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRNF----AFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + + R+ V + E+ A+ D S+
Sbjct: 121 GLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDSEF 177
>gi|301788378|ref|XP_002929604.1| PREDICTED: hypothetical protein LOC100475275 [Ailuropoda
melanoleuca]
Length = 498
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|155372181|ref|NP_001094701.1| serine/arginine-rich splicing factor 4 [Bos taurus]
gi|154425888|gb|AAI51319.1| SFRS4 protein [Bos taurus]
gi|296490028|tpg|DAA32141.1| TPA: splicing factor, arginine/serine-rich 4 [Bos taurus]
Length = 493
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|410045417|ref|XP_003951989.1| PREDICTED: RNA-binding protein 4B isoform 1 [Pan troglodytes]
gi|426369355|ref|XP_004051658.1| PREDICTED: RNA-binding protein 4B isoform 2 [Gorilla gorilla
gorilla]
gi|441607717|ref|XP_004087894.1| PREDICTED: RNA-binding protein 4B isoform 2 [Nomascus leucogenys]
Length = 143
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 16/155 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-QELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
I +++AFV E E+A +A+ D ++ R+I+
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRIIA 142
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|281340422|gb|EFB16006.1| hypothetical protein PANDA_019831 [Ailuropoda melanoleuca]
Length = 488
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|157138308|ref|XP_001657237.1| RNA binding motif protein 4,lark [Aedes aegypti]
gi|108869514|gb|EAT33739.1| AAEL013982-PA [Aedes aegypti]
Length = 330
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 13/141 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ S+L LF KYG + D+ + FV+ E++ DAI+ LD + +
Sbjct: 9 LFIGNVDEKTQPSDLRPLFEKYGTVVECDVVKNYGFVHMENEDQGRDAIQNLDG--YVVN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + VE AR R + + +K +FV N + TR ++ F+ YG V+
Sbjct: 67 GKAIKVEAARNRRAPNANTTK----------IFVGNLTDV-TRAPQVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKAL 145
I RN+ FV + + +A+
Sbjct: 116 DIVRNYGFVHLDPTGDVNEAI 136
>gi|399218146|emb|CCF75033.1| unnamed protein product [Babesia microti strain RI]
Length = 230
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 22/164 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
IFVGN + E+E +F K+G I +D+K G +AF+ F RDA DA+ D
Sbjct: 16 IFVGNLPEDITVREIENIFGKFGEIRDIDIKKGKTSNYTAYAFIEFYHMRDAEDAVESRD 75
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKS--------MANQRPTKTLFVINFDPIRTRER 109
+ +D+ RL VE++ GR R G++ +N R L + N R +
Sbjct: 76 G--YNFDKYRLRVEFS----GRKRSGNQGDKLRRYNDYSNTRTEHRLVISNISS-SCRWQ 128
Query: 110 DIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
DIK H + G V HV I+ +V++ + + ALE D S+L
Sbjct: 129 DIKDHMKRAGPVGHVCIKDGRGYVEYINKSDMKYALEKYDGSEL 172
>gi|391330558|ref|XP_003739725.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R ++E LF KYG+I +D+K+ FAFV FED RDA DA+ D
Sbjct: 9 VYVGNLPPDIRTKDIEDLFHKYGKITFIDLKNRRGPPFAFVEFEDPRDAEDAVSARDG-- 66
Query: 61 FGYDRRRLSVEWARGERGRHRDG---SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YD +L VE+ RG R R G + +R + V P + + D+K H
Sbjct: 67 YDYDGYKLRVEFPRGNSARPRGGPSRGRGPPARRSQYRVIVTGLPPTGSWQ-DLKDHMRE 125
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKDDS 168
G+V + + ++ V+F E+ A++ D S+ V Y +K+D+
Sbjct: 126 AGDVCYADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHESEVSYVRVKEDT 178
>gi|359490737|ref|XP_003634148.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359490739|ref|XP_003634149.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
gi|302143975|emb|CBI23080.3| unnamed protein product [Vitis vinifera]
Length = 250
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI V++K + FV FE+ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL----------FVINFDPIR 105
D + +D RL VE A G RG+ + + ++ P
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRFGVSRHSEYRVIVRGLPSS 122
Query: 106 TRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R+ F V + E+ A+ D ++
Sbjct: 123 ASWQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKYAIRKLDDTEF 174
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N T +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISSACTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + YG R+P Y VY
Sbjct: 168 EGHWSKECPVDRTGRMADLAEQYTEQYGAVRAPYAMGYGESVY 210
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISSACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|410966619|ref|XP_003989828.1| PREDICTED: serine/arginine-rich splicing factor 4 [Felis catus]
Length = 499
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|363746234|ref|XP_003643577.1| PREDICTED: RNA-binding protein 4B-like, partial [Gallus gallus]
Length = 242
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + S + + L V N P T +++ FE YG V+
Sbjct: 61 ------------HGVCINVEASKNKSKASTKLHVGNISPTCTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDKSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRPGQVADFTEAYNEQYGAVRTPYTAGYGETMY 210
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R R+ + +R
Sbjct: 137 QGKRMRVQLSTSR 149
>gi|348571040|ref|XP_003471304.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Cavia
porcellus]
Length = 497
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|47575808|ref|NP_001001248.1| arginine/serine-rich splicing factor 4 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|45872604|gb|AAH68213.1| splicing factor, arginine/serine-rich 6 [Xenopus (Silurana)
tropicalis]
Length = 568
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R F YG++ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLGYHVREKDIQRFFGGYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRD----GSKS-MANQR--------PTKTLFVINFDPIRTRE--R 109
R+ VE ARG R R RD GS+S NQR P +T F + + + +R +
Sbjct: 64 --RVIVEHARGPR-RDRDGYGYGSRSGYRNQRSGRDKYGPPVRTEFRLIVENLSSRCSWQ 120
Query: 110 DIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
D+K G V + + R N ++F + + +A+E D +++ R I
Sbjct: 121 DLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAMEKLDGTEINGRRI 172
>gi|189233695|ref|XP_001812208.1| PREDICTED: similar to B52 CG10851-PA [Tribolium castaneum]
Length = 300
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M +FVG Y R+ ++E+ F KYGRI+ V MK+GFAFV F+D RDA DA+ L+
Sbjct: 1 MGTRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARGE-RGRHR-DGSKSMANQR-----------PTKT---LFVINFDPI 104
+ R+SVE ARG RG + GS PT+T L V N
Sbjct: 61 LLGE--RVSVERARGTPRGCDQWRGSGGRGYGPPRGRSRDKYGPPTRTEYRLIVENLSS- 117
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + RRN V+F + + A++ D ++L R I
Sbjct: 118 RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASYSDMKNAIDKLDDTELNGRRI 174
>gi|403293287|ref|XP_003937651.1| PREDICTED: serine/arginine-rich splicing factor 4 [Saimiri
boliviensis boliviensis]
Length = 500
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|351695941|gb|EHA98859.1| Splicing factor, arginine/serine-rich 4 [Heterocephalus glaber]
Length = 489
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|332245240|ref|XP_003271770.1| PREDICTED: uncharacterized protein LOC100597914 isoform 1 [Nomascus
leucogenys]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|62898449|dbj|BAD97164.1| splicing factor, arginine/serine-rich 4 variant [Homo sapiens]
Length = 382
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGER--GRHRDGSKSMANQR--------PTKT---LFVINFDPIRTRERDI 111
R+ VE ARG R G + G +R PT+T L V N R +D+
Sbjct: 64 --RVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSWQDL 120
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|384939756|gb|AFI33483.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|114555162|ref|XP_001155042.1| PREDICTED: serine/arginine-rich splicing factor 4 isoform 5 [Pan
troglodytes]
gi|397515847|ref|XP_003828154.1| PREDICTED: serine/arginine-rich splicing factor 4 [Pan paniscus]
gi|261858864|dbj|BAI45954.1| splicing factor, arginine/serine-rich 4 [synthetic construct]
gi|410219650|gb|JAA07044.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253776|gb|JAA14855.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410253778|gb|JAA14856.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410300938|gb|JAA29069.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
gi|410356834|gb|JAA44544.1| serine/arginine-rich splicing factor 4 [Pan troglodytes]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|402853658|ref|XP_003891508.1| PREDICTED: serine/arginine-rich splicing factor 4 [Papio anubis]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|119628064|gb|EAX07659.1| splicing factor, arginine/serine-rich 4, isoform CRA_c [Homo
sapiens]
Length = 464
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|21361282|ref|NP_005617.2| serine/arginine-rich splicing factor 4 [Homo sapiens]
gi|20981726|sp|Q08170.2|SRSF4_HUMAN RecName: Full=Serine/arginine-rich splicing factor 4; AltName:
Full=Pre-mRNA-splicing factor SRP75; AltName:
Full=SRP001LB; AltName: Full=Splicing factor,
arginine/serine-rich 4
gi|12803875|gb|AAH02781.1| Splicing factor, arginine/serine-rich 4 [Homo sapiens]
gi|30583669|gb|AAP36083.1| splicing factor, arginine/serine-rich 4 [Homo sapiens]
gi|60655747|gb|AAX32437.1| splicing factor arginine/serine-rich 4 [synthetic construct]
gi|123994341|gb|ABM84772.1| splicing factor, arginine/serine-rich 4 [synthetic construct]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|386780975|ref|NP_001247807.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|355745074|gb|EHH49699.1| hypothetical protein EGM_00406 [Macaca fascicularis]
gi|380787433|gb|AFE65592.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
gi|383408863|gb|AFH27645.1| serine/arginine-rich splicing factor 4 [Macaca mulatta]
Length = 494
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|431891168|gb|ELK02045.1| Splicing factor, arginine/serine-rich 4 [Pteropus alecto]
Length = 500
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|30585347|gb|AAP36946.1| Homo sapiens splicing factor, arginine/serine-rich 4 [synthetic
construct]
gi|60652653|gb|AAX29021.1| splicing factor arginine/serine-rich 4 [synthetic construct]
Length = 495
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|326932930|ref|XP_003212564.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Meleagris
gallopavo]
Length = 475
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGER-----GRHRDGSKSMANQR-----PTKT---LFVINFDPIRTRERDI 111
R+ VE ARG R G R G + R PT+T L V N R +D+
Sbjct: 64 --RVIVEHARGPRRDSSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSWQDL 120
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
K + G V + + R+N ++F++ + +ALE D +++ R I
Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFKSYSDMKRALEKLDGTEVNGRKI 170
>gi|119628063|gb|EAX07658.1| splicing factor, arginine/serine-rich 4, isoform CRA_b [Homo
sapiens]
gi|158256450|dbj|BAF84198.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|350646485|emb|CCD58884.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 207
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG------FAFVYFEDDRDAADAIRGLDN 58
I+VGN +T+ ++E LFSKYG I +D+K+G FAFV FED+ DA+DA+RG D
Sbjct: 8 IYVGNLPPDTKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRGRDG 67
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
+ +D L VE R G S ++R + V P + + D+K H
Sbjct: 68 --YNFDGYALRVELPRTGGFNRGGGGASGPSRRSDFRVIVTGLPPTGSWQ-DLKDHMREA 124
Query: 119 GNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + + R+ V+F E+ A+ D SK
Sbjct: 125 GDVGYADVFRDGTGVVEFLRYEDMKYAIRRLDDSKF 160
>gi|168009612|ref|XP_001757499.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691193|gb|EDQ77556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 262
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+ F+ FED RDA DAIRG
Sbjct: 6 SRTIYVGNLPGDVREREIEDLFYKYGRIVDIDLKLPPRPPGYCFIEFEDGRDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG---------------------RHRDGSKSMANQRPTKT 95
D + +D RL VE A G RG G ++ R ++
Sbjct: 66 DG--YNFDGNRLRVEIAHGGRGPPPAVDRYSIYSSGGRGGGGSAADCGGRAGGVSRRSEY 123
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDR 150
+ P +D+K H G+V ++ R+ V F ++ A+ D
Sbjct: 124 RVTVTGLPSSASWQDLKDHMRRAGDVCFAQVFRDGTSGTMGIVDFTNYDDMKYAIRKLDD 183
Query: 151 SKL 153
S+
Sbjct: 184 SEF 186
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +++AFV E E+A +A+ D ++ + + V+ +
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>gi|395730870|ref|XP_003775801.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 4 [Pongo abelii]
Length = 492
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|147904116|ref|NP_001079647.1| serine/arginine-rich splicing factor 6 [Xenopus laevis]
gi|28436899|gb|AAH46668.1| MGC52985 protein [Xenopus laevis]
Length = 667
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +L+R F YG++ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLGYHVREKDLQRFFGGYGKLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRD----GSKS-MANQR--------PTKTLFVINFDPIRTRE--R 109
R+ +E ARG R R RD GS+S NQR P +T F + + + +R +
Sbjct: 64 --RVIIEHARGPR-RDRDGYGYGSRSGYRNQRTGRDKYGPPVRTEFRLVVENLSSRCSWQ 120
Query: 110 DIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
D+K G V + + R N ++F + + +A+E D +++ R I
Sbjct: 121 DLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAVEKLDGTEINGRRI 172
>gi|126328783|ref|XP_001365267.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Monodelphis
domestica]
Length = 491
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN E + E++ LF +YG + + FAFV+ ED + A AI+ L
Sbjct: 4 IFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQ--HSLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE + G+ N P K + V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASHGK------------NFGPVK-IHVANVE--KGCDEELRALFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ +NFAFV +EA A++ D S ++ I V+
Sbjct: 107 AVVKNFAFVHMPNYDEAMDAIKELDNSDFQEKRIHVQ 143
>gi|395856813|ref|XP_003800813.1| PREDICTED: serine/arginine-rich splicing factor 4 [Otolemur
garnettii]
Length = 503
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|308459677|ref|XP_003092154.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
gi|308254084|gb|EFO98036.1| hypothetical protein CRE_20061 [Caenorhabditis remanei]
Length = 336
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++VGN + R+ E+E +F KYG I +D+KS FAF+ F+D RDA +A+R D
Sbjct: 6 VYVGNLPSDVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRACDG 65
Query: 59 IPFGYDRRRLSVEWARGERGRHR-------DGSKSMANQRPTKTL---FVINFDPIRTRE 108
+ +D +RL VE+ RG+ R +GS+ N P K ++ P
Sbjct: 66 --YEFDGKRLRVEFPRGKGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKDD 167
+DIK H + G + + + V+FE E A+ D +K Y LK+D
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYENLEYAIRKYDDTKFRSHKGETAYIRLKED 183
>gi|116175257|ref|NP_001070684.1| serine/arginine-rich splicing factor 4 [Sus scrofa]
gi|115371753|gb|ABI96201.1| SFRS4 [Sus scrofa]
Length = 491
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|45387723|ref|NP_991217.1| uncharacterized protein LOC402952 [Danio rerio]
gi|41351185|gb|AAH65633.1| Zgc:77262 [Danio rerio]
Length = 331
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T + EL LF KYG + D+ + FV+ +++ A A+ L +
Sbjct: 4 IFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEV--N 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R++VE+A R ++V N P IK F+P+G V+
Sbjct: 62 GSRITVEYA-------------TTKVRNATKIYVGNV-PEGVAAAKIKELFQPFGKVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
I +N+AFV + + EA A+ + SK+ + I V
Sbjct: 108 DIVKNYAFVHMQRENEALDAIAKLNHSKVDGQKIFV 143
>gi|307438|gb|AAA36649.1| pre-mRNA splicing factor [Homo sapiens]
Length = 494
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|344287504|ref|XP_003415493.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Loxodonta
africana]
Length = 500
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFLSYSDMKRALEKLDGTEVNGRKI 170
>gi|348525775|ref|XP_003450397.1| PREDICTED: RNA-binding protein 4B-like [Oreochromis niloticus]
Length = 338
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T + E++ LF++YG + + FAFV+ +D + A AI+ L +
Sbjct: 4 IFVGNLPRATNEDEIKALFTEYGTVTECAIIKNFAFVHMDDRKAATKAIKNLH--LYKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE + G+ NQ K L V N + + + +++ FE YG V
Sbjct: 62 GTPINVEASHGK------------NQGSVK-LHVANVE--KGSDDELRALFEEYGTVTEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ +NFAFV +EA A++ D ++ + I V+
Sbjct: 107 AVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGKRIHVQ 143
>gi|157113456|ref|XP_001657837.1| arginine/serine-rich splicing factor [Aedes aegypti]
gi|108877724|gb|EAT41949.1| AAEL006473-PA [Aedes aegypti]
Length = 237
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 67
Query: 61 FGYDRRRLSVEWARG---------ERGRHRD---GSKSMANQRP----TKTLFVINFDPI 104
+ YD RL VE+ RG RG + D G++ N+ P ++ ++ P
Sbjct: 68 YDYDGYRLRVEFPRGGGPGRYSSSSRGGNSDRGGGARDRGNRGPPARRSQFRVMVTGLPA 127
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K H G+V + ++ V+F E+ A++ D S+ V Y
Sbjct: 128 SGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYI 187
Query: 164 -LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
+++DS +D RRGG R RS SP RRR +P Y
Sbjct: 188 RVREDSTNND----DRRGGEYRD----RSYSPR-RRRGTPTY 220
>gi|224068334|ref|XP_002302710.1| predicted protein [Populus trichocarpa]
gi|222844436|gb|EEE81983.1| predicted protein [Populus trichocarpa]
Length = 252
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG + +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREKEVEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------FVINFDPIRTRE 108
D + +D RL VE A G RG S + + V+ P
Sbjct: 66 DG--YDFDGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGGASRRSEYRVVVTGLPSSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + E+ A++ D S+
Sbjct: 124 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKYAIKKIDDSEF 172
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 54/263 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN + T Q E+ LF +YG + + +AFV+ +A A+ L+
Sbjct: 10 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLN------- 62
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYG 119
GR +G K ++ RP T +FV N +I++ FE YG
Sbjct: 63 -------------GRELNGKKMLVELSKPRPQNTWKIFVGNVSS-SCEGSEIRKIFEEYG 108
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
V+ I +++AFV + EA A+E+ + ++ + I+VE + K +R
Sbjct: 109 RVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHK-----------VQR 157
Query: 180 GGYGRHSPYGRSPS---PAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRH----- 231
G S +GR + A + R S ++ R AY Y +R +P+ R+
Sbjct: 158 SGTSNGSSHGRRRTDDREAPQSRESYNHRRATEAAYASYALKSGYERYAPESSRYDLYES 217
Query: 232 --RSPVPVYDRRRSPDYGRNRSP 252
R P P+Y Y R+RSP
Sbjct: 218 RPRPPSPLY-------YARDRSP 233
>gi|2914669|gb|AAC04476.1| SRP0001LB [Homo sapiens]
Length = 192
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGER--GRHRDGSKSMANQR--------PTKT---LFVINFDPIRTRERDI 111
R+ VE ARG R G + G +R PT+T L V N R +D+
Sbjct: 64 --RVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSWQDL 120
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 121 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|226504020|ref|NP_001150424.1| pre-mRNA-splicing factor SF2 [Zea mays]
gi|195639150|gb|ACG39043.1| pre-mRNA-splicing factor SF2 [Zea mays]
Length = 263
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 9 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 69 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 126 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 175
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 54/263 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN + T Q E+ LF +YG + + +AFV+ +A A+ L+
Sbjct: 3 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLN------- 55
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYG 119
GR +G K ++ RP T +FV N +I++ FE YG
Sbjct: 56 -------------GRELNGKKMLVELSKPRPQNTWKIFVGNVSS-SCEGSEIRKIFEEYG 101
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
V+ I +++AFV + EA A+E+ + ++ + I+VE + K +R
Sbjct: 102 RVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGKRINVEMSHK-----------VQR 150
Query: 180 GGYGRHSPYGRSPS---PAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRH----- 231
G S +GR + A + R S ++ R AY Y +R +P+ R+
Sbjct: 151 SGTSNGSSHGRRRTDDREAPQSRESYNHRRATEAAYASYALKSGYERYAPESSRYDLYES 210
Query: 232 --RSPVPVYDRRRSPDYGRNRSP 252
R P P+Y Y R+RSP
Sbjct: 211 RPRPPSPLY-------YARDRSP 226
>gi|311771542|ref|NP_001185773.1| RNA-binding protein 4 isoform 3 [Homo sapiens]
gi|397517073|ref|XP_003828744.1| PREDICTED: RNA-binding protein 4 isoform 3 [Pan paniscus]
gi|426369351|ref|XP_004051656.1| PREDICTED: RNA-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
gi|410222934|gb|JAA08686.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254454|gb|JAA15194.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295010|gb|JAA26105.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352745|gb|JAA42976.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 173
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
I +++AFV E E+A +A+ D ++ ++ V
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKITPV 143
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|449435631|ref|XP_004135598.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
Length = 315
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 97/220 (44%), Gaps = 31/220 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDVRDAEDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D F D RL VE+A G RG + + ++ P +D+K H
Sbjct: 66 DGYKF--DGCRLRVEFAHGGRGHSSSVDRYSRSGSSRDFAVLVTGLPSSASWQDLKDHMR 123
Query: 117 PYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
G+V + R+ V + ++ A+ D S+ + +K+
Sbjct: 124 RAGDVCFSEVFRDRGGMAGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYVRVKE------ 177
Query: 173 RYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR--GRSP 210
YDS RHS Y RSPS RR DY R RSP
Sbjct: 178 -YDS-------RHS-YSRSPSLDSRR---SDYSRSPSRSP 205
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 110/260 (42%), Gaps = 50/260 (19%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN + T + E+ LF +YG + + +AFV+ R+A A+ L+
Sbjct: 70 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELN------- 122
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYG 119
GR +G K ++ RP T +FV N +I++ FE YG
Sbjct: 123 -------------GRELNGKKMLVELSKPRPQNTWKIFVGNVSS-SCEAAEIRKIFEEYG 168
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VL I +++AFV + EA A+E+ + + + I+VE S + R
Sbjct: 169 RVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGKRINVEM-----SNKVQRSGGANG 223
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRH-------R 232
G + R P R A + R S ++ R AY Y +RR+P+ R+ R
Sbjct: 224 GSHSRRRPDDRE---APQSRESYNHRRATEAAYASYKSNY--ERRAPEPSRYDPYESRPR 278
Query: 233 SPVPVYDRRRSPDYGRNRSP 252
PVY Y R+RSP
Sbjct: 279 PQSPVY-------YARDRSP 291
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 110/260 (42%), Gaps = 50/260 (19%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN + T + E+ LF +YG + + +AFV+ R+A A+ L+
Sbjct: 10 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELN------- 62
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYG 119
GR +G K ++ RP T +FV N +I++ FE YG
Sbjct: 63 -------------GRELNGKKMLVELSKPRPQNTWKIFVGNVSS-SCEAAEIRKIFEEYG 108
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
VL I +++AFV + EA A+E+ + + + I+VE S + R
Sbjct: 109 RVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGKRINVEM-----SNKVQRSGGANG 163
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRH-------R 232
G + R P R A + R S ++ R AY Y +RR+P+ R+ R
Sbjct: 164 GSHSRRRPDDRE---APQSRESYNHRRATEAAYASYKSNY--ERRAPEPSRYDPYESRPR 218
Query: 233 SPVPVYDRRRSPDYGRNRSP 252
PVY Y R+RSP
Sbjct: 219 PQSPVY-------YARDRSP 231
>gi|255557727|ref|XP_002519893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223540939|gb|EEF42497.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 264
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 26/177 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +++K + FV FE+ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIREWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENTRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRD---------------GSKSMANQRPTKTLFVIN 100
D + +D RL VE A G RG+ R ++ ++
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGQSSSDRRGGYGGSGGGGSGSGGRYCISRHSEFRVIVR 122
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + R+ F V + E+ A+ D ++
Sbjct: 123 GLPSSASWQDLKDHMRKAGDVCFAEVSRDSDGTFGIVDYTNYEDMKYAIRKLDDTEF 179
>gi|196004628|ref|XP_002112181.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
gi|190586080|gb|EDV26148.1| hypothetical protein TRIADDRAFT_23659 [Trichoplax adhaerens]
Length = 266
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ ++E F +G+I V +K+GF FV F+D RDA DAI L+N +
Sbjct: 4 VYVGRLSYRARERDVEHFFRGFGKIREVTLKNGFGFVEFDDPRDAEDAIYELNNRDLMGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMAN------------QRPTKTLFVINFDPIRTRERDIK 112
R+ VE+A+G R R G+ + R T+ VIN R RDIK
Sbjct: 64 --RVIVEFAKGTRYDDRRGAYPLITPSYLLFRPRFGRPRNTEWRLVINNLSSRATWRDIK 121
Query: 113 RHFEPYGNVL----HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ G+V H ++ V F T ++ AL+ D ++L R +
Sbjct: 122 DYMRQAGDVTFADAHKQLGEGRGVVDFATYDDMKDALKRLDGTELCGRKV 171
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVGN E Q EL+ LF ++GR+ D+ + FV+ +D + A +A+ L+ +
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDRKAADEAVHNLNQ--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ + + L V N T + +++ FE YG VL
Sbjct: 62 NVAINVEHSRGK-------------PKASTKLHVSNLSSSCTSD-ELRAKFEEYGAVLEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +++AFV E EA A+++ + ++ + + V+ +
Sbjct: 108 DIVKDYAFVHMERSAEALDAIKNLENTEFKGKRMHVQLS 146
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V N EL F +YG + D+ +AFV+ E +A DAI+ L+N F
Sbjct: 77 STKLHVSNLSSSCTSDELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLENTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 KGKRMHVQLSTSR 149
>gi|339522325|gb|AEJ84327.1| RNA-binding protein 4 [Capra hircus]
Length = 362
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVGASTNKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|325190523|emb|CCA25022.1| premRNAsplicing factor SF2 putative [Albugo laibachii Nc14]
Length = 303
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
MS+ I+VGN R E+E LF K+G+I+ +D+K +AF+ FED RDA DAI
Sbjct: 1 MSKRIYVGNLPMSIRTREVEDLFYKHGKIQDIDLKLPLRPPAYAFIDFEDARDAEDAIEA 60
Query: 56 LDNIPFGYDRRRLSVEWA---RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
D + Y+ +RL VE A E+ +H GS+S + + T+ V N P R +D+K
Sbjct: 61 RDG--YKYEGQRLRVERANPKNIEKEKHVRGSRS----KGSNTVKVTNL-PSRVSWQDLK 113
Query: 113 RHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKLVDR 156
G V +I ++ V F+ ++ A++ D +K +R
Sbjct: 114 DFMRKAGEVTFAKIDKHGDGIVDFKHHDDMKYAIKRLDDTKFRNR 158
>gi|242040955|ref|XP_002467872.1| hypothetical protein SORBIDRAFT_01g035680 [Sorghum bicolor]
gi|241921726|gb|EER94870.1| hypothetical protein SORBIDRAFT_01g035680 [Sorghum bicolor]
gi|448878354|gb|AGE46140.1| arginine/serine-rich splicing factor SR32 transcript I [Sorghum
bicolor]
Length = 286
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDARDAEDAIAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGHRLRVEAAHGGRG 85
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
++V N + ET Q E E++FS YG I ++ GF FV FED A A L+
Sbjct: 223 VYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELN 282
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ F ++L V A+ + R ++ K + R K LFV N D ++
Sbjct: 283 DTDF--KGQKLYVGRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDD-SVDDQK 339
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F P+G + V++ R+ F FV F T EEATKA+ ++ + + + V A
Sbjct: 340 LEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 399
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAIRGL 56
++VG + ++ L LFS G + + G+A+V F D AI L
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKL 101
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ P R + W++ + + GS + +F+ N P + + F
Sbjct: 102 NYTPI--KGRPCRIMWSQRDPSLRKKGSGN---------VFIKNLHP-AIDNKALHDTFS 149
Query: 117 PYGNVLHVRI-------RRNFAFVQF 135
+GN+L +I R F FV F
Sbjct: 150 VFGNILSCKIATDETGKSRKFGFVHF 175
>gi|52140009|gb|AAU29331.1| ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
gi|414877275|tpg|DAA54406.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 isoform 1 [Zea
mays]
gi|414877276|tpg|DAA54407.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 isoform 2 [Zea
mays]
Length = 260
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 123 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 172
>gi|194696448|gb|ACF82308.1| unknown [Zea mays]
gi|414877280|tpg|DAA54411.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 263
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 9 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 69 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 126 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 175
>gi|52140013|gb|AAU29334.1| ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea mays]
gi|413944989|gb|AFW77638.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 253
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ E++ LF KYGRI +D+K GFAFV FED RDA DAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAEDAIYGRDG- 67
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G RG + + A++R + V P +D+
Sbjct: 68 -YNFDGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V + R + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEF 171
>gi|11527011|gb|AAG36874.1|AF242767_1 SF2 [Caenorhabditis elegans]
Length = 258
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R+ E+E +F KYGRI+ VD+KSG FAFV FED RDA DA+R D
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 61 FGYDRRRLSVEWARGERGRH------RDGSKSMANQRPTKTL--------------FVIN 100
F D RR+ VE+ RG R +DG ++
Sbjct: 71 F--DGRRIRVEFTRGVGPRGPSGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 128
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + + R+ V+F E+ A+ D +K
Sbjct: 129 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKF 182
>gi|198417315|ref|XP_002119186.1| PREDICTED: similar to RNA binding motif protein 4B [Ciona
intestinalis]
Length = 157
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVG + ++SELE LF YG I + + FV+ D DA AI GLD
Sbjct: 4 IFVGRLPEDVKKSELEELFKAYGEITDCSILKNYGFVHMADLNDAKKAIAGLDKTDL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+G + S + +FV N P T+ DI + F+ YG V+
Sbjct: 61 ------------KGNSINVELSTTKVQKASKIFVGNLPP-ETKSADIHKLFKKYGTVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ +N+AFV + A A+ + ++ I V+ A
Sbjct: 108 DVVKNYAFVHMGRENMARDAINGLNNTEFNGNKIGVQMA 146
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
+ IFVGN ET+ +++ +LF KYG + D+ +AFV+ + A DAI GL+N F
Sbjct: 77 ASKIFVGNLPPETKSADIHKLFKKYGTVIECDVVKNYAFVHMGRENMARDAINGLNNTEF 136
Query: 62 GYDRRRLSVEWARGERGRHRDG 83
+ ++ V+ AR +R G
Sbjct: 137 --NGNKIGVQMARSQRNLDMHG 156
>gi|395505266|ref|XP_003756964.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2
[Sarcophilus harrisii]
Length = 321
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 23/173 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRD----GSKSMANQR---------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R R RD GS+ +++R P +T L V N R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRRYSSRRATGRDKYGPPVRTEYRLIVENLSS-RCSW 119
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 QDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 172
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
I +++AFV E E+A +A+ D ++ S+ L ++ + S RRG
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGEPPSLGRGLNTRLCAENGWISKRRG 163
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|302847745|ref|XP_002955406.1| hypothetical protein VOLCADRAFT_45192 [Volvox carteri f.
nagariensis]
gi|300259248|gb|EFJ43477.1| hypothetical protein VOLCADRAFT_45192 [Volvox carteri f.
nagariensis]
Length = 245
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
+FVGN + R+ E+E LF KYGRI VD+K G FAFV FED RDA DA+RG D I
Sbjct: 1 VFVGNLPMDVREREVEDLFFKYGRIRSVDLKIGPRPPAFAFVEFEDQRDAYDAVRGRDGI 60
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-------------------QRPTKTLFVIN 100
F R R+ + R G R T ++
Sbjct: 61 EFQGQRLRVEISHGRRGGFGGGGGGGGGGGYGGGGGGGYGGGGPNPYGPSRRTDYRVIVT 120
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
PI + +D+K H G V ++ R+ + + T+E+ AL D S+
Sbjct: 121 GLPISSSWQDLKDHMRRAGEVTFSQVMRDGRGMLGLIDYATREDMETALRKLDGSEF 177
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 41 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 98
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 99 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 144
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 145 DIVKDYAFVHMERAEDAVEAIRGLDNTE 172
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 114 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 173
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 41 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 99
Query: 156 RVISVE 161
I+VE
Sbjct: 100 VNINVE 105
>gi|448878366|gb|AGE46146.1| arginine/serine-rich splicing factor SR30 transcript V [Sorghum
bicolor]
Length = 278
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ E++ LF KYGRI +D+K GFAFV FED DA DAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDG- 67
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G RG + + A++R + V P +D+
Sbjct: 68 -YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V + R + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEF 171
>gi|224032703|gb|ACN35427.1| unknown [Zea mays]
gi|414877277|tpg|DAA54408.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 234
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 123 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 172
>gi|448878368|gb|AGE46147.1| arginine/serine-rich splicing factor SR30 transcript VI [Sorghum
bicolor]
Length = 237
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ E++ LF KYGRI +D+K GFAFV FED DA DAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDG- 67
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G RG + + A++R + V P +D+
Sbjct: 68 -YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V + R + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEF 171
>gi|426252106|ref|XP_004019759.1| PREDICTED: RNA-binding protein 4B isoform 2 [Ovis aries]
Length = 147
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTN-QELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|308466765|ref|XP_003095634.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
gi|308244633|gb|EFO88585.1| hypothetical protein CRE_13671 [Caenorhabditis remanei]
Length = 328
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++VGN R+ E+E +F KYG I +D+KS FAF+ F+D RDA +A+R D
Sbjct: 6 VYVGNLPSNVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRARDG 65
Query: 59 IPFGYDRRRLSVEWARGERGRHR-------DGSKSMANQRPTKTL---FVINFDPIRTRE 108
+ +D +RL VE+ RG+ R +GS+ N P K ++ P
Sbjct: 66 --YEFDGKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
+DIK H + G + + + V+FE E+ A+ D +K
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAIRKYDDTKF 168
>gi|221221726|gb|ACM09524.1| RNA-binding protein 4B [Salmo salar]
gi|221222322|gb|ACM09822.1| RNA-binding protein 4B [Salmo salar]
Length = 166
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN E + E++ LFS+YG + + FAFV+ +D + A AIR L +
Sbjct: 4 IFIGNVPREADKDEIQALFSQYGAVTECAIVKNFAFVHMDDRKSATKAIRSLH--LYKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ NQ K L V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASRGK------------NQGAVK-LHVTNVE--KGNDDELRTLFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTD 149
I +NFAFV + +EA A++ D
Sbjct: 107 AIVKNFAFVHMDNSDEALDAIKGLD 131
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 18 ELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74
EL LF +YG + + FAFV+ ++ +A DAI+GLDN+ F R + + +R
Sbjct: 92 ELRTLFEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNVEFQGKRIHVQISKSR 148
>gi|308459689|ref|XP_003092160.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
gi|308254090|gb|EFO98042.1| hypothetical protein CRE_20046 [Caenorhabditis remanei]
Length = 333
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++VGN + R+ E+E +F KYG I +D+KS FAF+ F+D RDA +A+R D
Sbjct: 6 VYVGNLPSDVREKEIEDIFHKYGEIRNIDIKSRSRDSPAFAFIQFDDRRDAKEAVRARDG 65
Query: 59 IPFGYDRRRLSVEWARGERGRHR-------DGSKSMANQRPTKTL---FVINFDPIRTRE 108
+ +D +RL VE+ RG+ R +GS+ N P K ++ P
Sbjct: 66 --YEFDGKRLRVEFPRGQGPRGPGGRPTRDNGSRFGRNGGPPKRSNYRLIVEGLPRSGSW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
+DIK H + G + + + V+FE E+ A D +K
Sbjct: 124 QDIKDHLKQAGEICYANVHNGEGVVEFERYEDLEYAFRKYDDTKF 168
>gi|414877279|tpg|DAA54410.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 272
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 9 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 69 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 126 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 175
>gi|417396175|gb|JAA45121.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 143
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|52140015|gb|AAU29336.1| ASF/SF2-like pre-mRNA splicing factor SRP31''' [Zea mays]
gi|413944988|gb|AFW77637.1| ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 264
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ E++ LF KYGRI +D+K GFAFV FED RDA DAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAEDAIYGRDG- 67
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G RG + + A++R + V P +D+
Sbjct: 68 -YNFDGHRLRVELAHGGRGTSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V + R + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEF 171
>gi|255542756|ref|XP_002512441.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223548402|gb|EEF49893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 300
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR ++VGN + RQ E++ LF KYG I VD+K G+AFV FED RDA DAIRG
Sbjct: 43 SRTLYVGNLPGDIRQREVKDLFYKYGPIVEVDLKIPPRPPGYAFVEFEDARDAEDAIRGR 102
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN---------QRPTKTLFVINFDPIRTR 107
D + +D RL VE A G R G + + R + ++ P
Sbjct: 103 DG--YNFDGCRLRVELAHGGRRHSSPGDRYSSYSGRSGSRGPSRRSDYRVLVTGLPSSAS 160
Query: 108 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + ++ A++ D S+
Sbjct: 161 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKHAIKKLDDSEF 210
>gi|311771540|ref|NP_001185772.1| RNA-binding protein 4 isoform 2 [Homo sapiens]
gi|332249624|ref|XP_003273958.1| PREDICTED: RNA-binding protein 4 isoform 1 [Nomascus leucogenys]
gi|338712241|ref|XP_003362680.1| PREDICTED: RNA-binding protein 4 isoform 3 [Equus caballus]
gi|397517071|ref|XP_003828743.1| PREDICTED: RNA-binding protein 4 isoform 2 [Pan paniscus]
gi|426252102|ref|XP_004019757.1| PREDICTED: RNA-binding protein 4 isoform 2 [Ovis aries]
gi|426369347|ref|XP_004051654.1| PREDICTED: RNA-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426369349|ref|XP_004051655.1| PREDICTED: RNA-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
gi|441607708|ref|XP_003273960.2| PREDICTED: RNA-binding protein 4 isoform 3 [Nomascus leucogenys]
gi|40787678|gb|AAH64960.1| RBM4 protein [Homo sapiens]
gi|410222936|gb|JAA08687.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254456|gb|JAA15195.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295012|gb|JAA26106.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352749|gb|JAA42978.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 143
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|427777415|gb|JAA54159.1| Putative alternative splicing factor [Rhipicephalus pulchellus]
Length = 484
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+R ++VG+ Y R+ +LER F +G+I V +K+GF FV F+D RDA DA+ L+
Sbjct: 1 MTR-VYVGHLSYRVRERDLERFFRGFGKIREVLLKNGFGFVEFDDYRDADDAVYELNGRE 59
Query: 61 FGYDRRRLSVEWARGERGR---HRDGSKSMANQR---PTKTLFVINFDPIRTR--ERDIK 112
D R+ VE A G R R R PT+T + + + + +R +D+K
Sbjct: 60 L--DGERVVVELAHGTARRPPPPRSAWADSGTNRYGPPTRTDYRVIIENLSSRISWQDLK 117
Query: 113 RHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
G+V + R RRN V+F + + +A+E D +++ R I V
Sbjct: 118 DRMRQVGDVTYADAHRHRRNEGVVEFASYSDMKRAIEKLDNTEINGRRIRV 168
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DA+R L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAMRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
I +++AFV E E+A +A+ D ++ ++ V
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKITPV 143
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAMRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T + +++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|426328680|ref|XP_004025378.1| PREDICTED: uncharacterized protein LOC101134512, partial [Gorilla
gorilla gorilla]
Length = 434
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 21/157 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 2 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
R+ VE ARG R RDGS + +K + + ++ G V +
Sbjct: 62 --RVIVEHARGPR---RDGSYGSGRSKHSKGILLSDY-------------MRQAGEVTYA 103
Query: 125 ---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ R+N ++F + + +ALE D +++ R I
Sbjct: 104 DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 140
>gi|357131986|ref|XP_003567614.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 262
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
S I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + G + ++R + V P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYQYERPRSYSSGRRGGVSRRSEYRVLVDGL-PSSAS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEATKALESTD 149
+D+K H G+V + R + ++ + A + L+ T+
Sbjct: 123 WQDLKDHMRRAGDVCFSDVYREAGAIVGIVDYTNYDDMKYAIRKLDGTE 171
>gi|52140010|gb|AAU29332.1| ASF/SF2-like pre-mRNA splicing factor SRP30' [Zea mays]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 123 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 172
>gi|414877281|tpg|DAA54412.1| TPA: ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 244
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 9 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 69 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 126 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 175
>gi|414877278|tpg|DAA54409.1| TPA: hypothetical protein ZEAMMB73_543160 [Zea mays]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 9 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG+ + + ++R + V P
Sbjct: 69 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRGGVSRRSDFRVMVTGL-PSSAS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 126 WQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 175
>gi|345321114|ref|XP_003430384.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
gi|345321116|ref|XP_003430385.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
gi|345321118|ref|XP_003430386.1| PREDICTED: RNA-binding protein 4B-like isoform 3 [Ornithorhynchus
anatinus]
Length = 143
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-MELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
I +++AFV E E+A +A+ D ++ R+ +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGRIFA 142
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T +++L LF KYG + D+ + FV+ E+++ +AI+ L+
Sbjct: 9 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG------ 62
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
E G+ + A PT +FV N +TR +++ F+ +G V+
Sbjct: 63 ------ELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I RN+ FV + + A++ + + + + V+ +
Sbjct: 116 DIVRNYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 154
>gi|410906707|ref|XP_003966833.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 347
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN E Q E++ LF++YG + + +AFV+ +D + A AI+ L
Sbjct: 4 IFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKSLHL--HKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE + G+ N K L V N + + + +++ FE YG+V
Sbjct: 62 GTAINVEASHGK------------NPGAVK-LHVANVE--KGADDELRALFEEYGSVTEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+ +NFAFV +EA A++ D ++ + I V+
Sbjct: 107 AVVKNFAFVHMSNSDEAMDAIKGLDNTEFQGKRIHVQ 143
>gi|108708089|gb|ABF95884.1| Pre-mRNA splicing factor SF2, putative, expressed [Oryza sativa
Japonica Group]
gi|215692748|dbj|BAG88168.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192809|gb|EEC75236.1| hypothetical protein OsI_11526 [Oryza sativa Indica Group]
gi|222624911|gb|EEE59043.1| hypothetical protein OsJ_10806 [Oryza sativa Japonica Group]
Length = 286
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA +A G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN---------QRPTKTLFVINFDPIRT 106
D + +D RL VE A G RG +N R ++ ++ P
Sbjct: 65 RDG--YNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSA 122
Query: 107 RERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A++ D S+
Sbjct: 123 SWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-QELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|432882993|ref|XP_004074180.1| PREDICTED: uncharacterized protein LOC101163182 isoform 4 [Oryzias
latipes]
Length = 344
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 F-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
GY R W GR R G + R L V N R +D+K + G
Sbjct: 60 LCGYGR------WG----GRDRYGPPVRTDYR----LIVENLSS-RCSWQDLKDYMRQAG 104
Query: 120 NVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
V + + RRN ++F + +ALE D +++ R I
Sbjct: 105 EVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 146
>gi|328786878|ref|XP_391860.4| PREDICTED: serine/arginine-rich splicing factor 4 [Apis mellifera]
Length = 419
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMW-------FNCFFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V I+ + FV+F+ +A A+ + +L+ I+VE A D RG
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERARGTPRGSDQWRYGDSRG 142
Query: 181 GYG 183
GYG
Sbjct: 143 GYG 145
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGE 118
Query: 65 RRRLSVEWARG------------ERGRHRDGSKS----MANQR----------------- 91
R++VE ARG RG + D +S M + R
Sbjct: 119 --RITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTASSYKQSL 176
Query: 92 -----PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEA 141
PT+T + + + + +R +D+K + G V + + RRN V+F T +
Sbjct: 177 PRYGPPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDL 236
Query: 142 TKALESTDRSKLVDRVI 158
A++ D ++L R I
Sbjct: 237 KNAIDKLDDTELNGRRI 253
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
I+V N + ET E E+LFS+YG I ++ GF FV F D AA A+ L+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
F + L V A+ + R + K R K LF+ N D E+
Sbjct: 293 GKEF--KSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK- 349
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F PYG + R+ R+ F FV F + EEATKA+ ++ + + + V A
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 164 LKDDSER 170
+ D R
Sbjct: 410 QRKDVRR 416
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N L FS +G + + GF FV+F+++ DA DAI ++
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ +++ + +R + +K+ ++V N D + T + + ++ F
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKLEEAKA-----NFTNIYVKNID-VETTDEEFEQLFSQ 253
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISV 160
YG ++ + ++ F FV F A KA+E + + + + V
Sbjct: 254 YGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
>gi|397517077|ref|XP_003828746.1| PREDICTED: RNA-binding protein 4 isoform 5 [Pan paniscus]
Length = 155
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|307189409|gb|EFN73819.1| Serine-arginine protein 55 [Camponotus floridanus]
Length = 387
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMW-------FNCFFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V I+ + FV+F+ +A A+ + +L+ I+VE A D RG
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERARGTPRGSDQWRYGDSRG 142
Query: 181 GYG 183
GYG
Sbjct: 143 GYG 145
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGE 118
Query: 65 RRRLSVEWARG------------ERGRHRDGSKS----MANQR----------------- 91
R ++VE ARG RG + D +S M + R
Sbjct: 119 R--ITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTASSYKQSL 176
Query: 92 -----PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEA 141
PT+T + + + + +R +D+K + G V + + RRN V+F T +
Sbjct: 177 PRYGPPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDL 236
Query: 142 TKALESTDRSKLVDRVI 158
A++ D ++L R I
Sbjct: 237 KNAIDKLDDTELNGRRI 253
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + +L LFS++G ++ D+ + FV+ + ++A AIR L + +
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHH--YELK 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE ++G+ R + L V N T + +++ FE YG V+
Sbjct: 62 GQAINVELSKGK-------------PRGSTKLHVSNISSGCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +++AFV E ++A +A+ + + ++I V+ +
Sbjct: 108 DIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLS 146
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V N EL F +YG + D+ +AFV+ E DA +AI GL+N F
Sbjct: 77 STKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTF 136
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + +L LFS++G ++ D+ + FV+ + ++A AIR L + +
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHH--YELK 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ ++VE ++G+ R + L V N T + +++ FE YG V+
Sbjct: 62 GQAINVELSKGK-------------PRGSTKLHVSNISSGCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I +++AFV E ++A +A+ + + ++I V+ +
Sbjct: 108 DIVKDYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLS 146
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + V N EL F +YG + D+ +AFV+ E DA +AI GL+N F
Sbjct: 77 STKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTF 136
>gi|357112280|ref|XP_003557937.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
distachyon]
Length = 289
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 29/176 (16%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DA G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR---HRDGSKSMAN------------QRPTKTLFVIN 100
D + +D RL VE A G RG D S S R T ++
Sbjct: 65 RDG--YNFDGNRLRVEPAHGGRGSGGPSHDRSSSFGGGGGGGGGGRRGVSRHTDYRVLVT 122
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEATKALESTD 149
P +D+K H G+V + R + + ++ + A K L+ T+
Sbjct: 123 GLPSSASWQDLKDHMRRAGDVCFSEVYREGSGTTGIVDYTNYDDMKYAIKKLDDTE 178
>gi|167387718|ref|XP_001738276.1| arginine/serine-rich splicing factor [Entamoeba dispar SAW760]
gi|165898565|gb|EDR25398.1| arginine/serine-rich splicing factor, putative [Entamoeba dispar
SAW760]
Length = 202
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
+R +F+G F E R+S+++ +FSKY +IER+D+K+GF FV E + DA I PF
Sbjct: 4 NRKLFLGRFPSEMRESDVQEMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIELSQTTPF 63
Query: 62 GYDRRRLSVEWAR 74
+ +++++E +R
Sbjct: 64 MFHDKKINIELSR 76
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV- 154
LF+ F P RE D++ F Y + + I+ F FV ET+E+A K +E + + +
Sbjct: 7 LFLGRF-PSEMRESDVQEMFSKYTKIERIDIKTGFCFVVCETEEDAKKIIELSQTTPFMF 65
Query: 155 -DRVISVEYALKDDSERDDRYDSPRRGGYGRHSP 187
D+ I++E + +++S ++ Y ++G R+ P
Sbjct: 66 HDKKINIELSRQNNSSKEC-YVCHQQGHIARNCP 98
>gi|350408075|ref|XP_003488293.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Bombus impatiens]
Length = 418
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMW-------FNCFFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V I+ + FV+F+ +A A+ + +L+ I+VE A D RG
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERARGTPRGSDQWRYGDSRG 142
Query: 181 GYG 183
GYG
Sbjct: 143 GYG 145
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGE 118
Query: 65 RRRLSVEWARG------------ERGRHRDGSKS----MANQR----------------- 91
R++VE ARG RG + D +S M + R
Sbjct: 119 --RITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTASSYKQSL 176
Query: 92 -----PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEA 141
PT+T + + + + +R +D+K + G V + + RRN V+F T +
Sbjct: 177 PRYGPPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDL 236
Query: 142 TKALESTDRSKLVDRVI 158
A++ D ++L R I
Sbjct: 237 KNAIDKLDDTELNGRRI 253
>gi|422295771|gb|EKU23070.1| arginine serine-rich splicing factor [Nannochloropsis gaditana
CCMP526]
Length = 1161
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 23/183 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGL 56
SR ++VGN ++ L F YG IE V + + F++F+D +A A + L
Sbjct: 371 SRHVYVGNLPNGVKEEHLREAFKAYGGIESVRLLRRTAQCMTGFLHFKDAAEAIRAKKEL 430
Query: 57 DNIPF---GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
D PF R+ + +++ +S N +P +++ V N P+ RE D+
Sbjct: 431 DRKPFVAGHLPRQVMKIQY------------QSRGNNKPCRSIRVHNL-PVGVRETDLSE 477
Query: 114 HFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 171
F +G V+ V I N AF+ ET E+A +A+ + R + ++YAL++ ++
Sbjct: 478 LFGAFGRVMIVVINTNSNIAFLSLETVEQAEQAMARWHDQEWRGRHLFLDYALRETISKE 537
Query: 172 DRY 174
D +
Sbjct: 538 DPH 540
>gi|448878370|gb|AGE46148.1| arginine/serine-rich splicing factor SR27 transcript I [Sorghum
bicolor]
Length = 230
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG+ +S + R + ++ P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSARRGGVSRRSDFRVMVTGLPSSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 124 QDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 172
>gi|148224986|ref|NP_001080148.1| splicing factor, arginine/serine-rich 6 [Xenopus laevis]
gi|28422195|gb|AAH44265.1| B52-prov protein [Xenopus laevis]
Length = 660
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 27/178 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +++R F YG++ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYVGRLGYHVREKDIQRFFGSYGKLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRD----GSKSMA-------NQR--------PTKTLFVINFDPIR 105
R+ VE ARG R R RD GS+S NQR P +T F + + +
Sbjct: 64 --RVIVEHARGPR-RDRDGYGYGSRSKHGSPGGYRNQRSGRDKYGPPVRTEFRLVVENLS 120
Query: 106 TRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+R +D+K G V + + R N ++F + + +A+E D +++ R I
Sbjct: 121 SRCSWQDLKDFMRQAGEVTYADAHKERPNEGVIEFRSYSDLKRAVEKLDGTEINGRRI 178
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTN-QELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T + +++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN--- 58
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 59 ----IPFG--YDRRRLSVEWARGERGRHRDG 83
+ FG R L W R +GR+ DG
Sbjct: 137 QGESLSFGRVLCTRLLGTNWMR--KGRNWDG 165
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|452987975|gb|EME87730.1| hypothetical protein MYCFIDRAFT_120538, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 179
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 21/177 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIR 54
S+ I++GN +E +LE F ++G + + + GF F+ F + DA AIR
Sbjct: 2 SKIIYIGNLFFEVTAPQLEAEFGRFGEVTNSRIVTDTNGRSKGFGFIEFANRDDADRAIR 61
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
LD F + RR+SV++ R R+ ++ N +P+KTLF+ N + +RD+
Sbjct: 62 ELDQKVF--EGRRMSVQY---HVPRERNKAQRNVNTKPSKTLFIGNM-SYQMSDRDLNDL 115
Query: 115 FEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F NVL VR+ R FA F + ATKA E ++ + R + V+Y+
Sbjct: 116 FRQIRNVLDVRVAIDRRSGQPRGFAHADFVDEASATKAKELLEQKVVYGRQLRVDYS 172
>gi|227204393|dbj|BAH57048.1| AT3G61860 [Arabidopsis thaliana]
Length = 71
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG 37
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG 36
>gi|448878356|gb|AGE46141.1| arginine/serine-rich splicing factor SR32 transcript II [Sorghum
bicolor]
Length = 322
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDARDAEDAIAGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YNFDGHRLRVEAAHGGRG 85
>gi|448878358|gb|AGE46142.1| arginine/serine-rich splicing factor SR30 transcript I [Sorghum
bicolor]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ E++ LF KYGRI +D+K GFAFV FED DA DAI G D
Sbjct: 9 IYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDPHDAEDAIYGRDG- 67
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G RG + + A++R + V P +D+
Sbjct: 68 -YNFDGHRLRVELAHGGRGPSSFDRSSSYSSAGQRGASKRSDYRVMVTGL-PSSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V + R + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEF 171
>gi|270015083|gb|EFA11531.1| hypothetical protein TcasGA2_TC016051 [Tribolium castaneum]
Length = 303
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 32/187 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M +FVG Y R+ ++E+ F KYGRI+ V MK+GFAFV F+D RDA DA+ L+
Sbjct: 1 MGTRVFVGGLTYRVRERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARGE-------RGRHRDGSKSMANQR----------------PTKT-- 95
+ R+SVE ARG RG G + PT+T
Sbjct: 61 LLGE--RVSVERARGTPRGCDQWRGSGGRGYGPPRGRSRDNREPDMRSHDRYGPPTRTEY 118
Query: 96 -LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRS 151
L V N R +D+K + G V + + RRN V+F + + A++ D +
Sbjct: 119 RLIVENLSS-RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASYSDMKNAIDKLDDT 177
Query: 152 KLVDRVI 158
+L R I
Sbjct: 178 ELNGRRI 184
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVEASKNKSKASTKLHVGNISPTCTN-QELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|255648057|gb|ACU24484.1| unknown [Glycine max]
Length = 267
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG--------------RHRDGSKSMANQRPTKTLFVINF 101
D + +D RL VE A G RG G R ++ ++
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGNGGAGGGRFGISRHSEFRVIVRG 122
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + R+ F V + ++ A+ D ++
Sbjct: 123 LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDAEF 178
>gi|2443473|gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana]
Length = 272
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------------QRPTKTLFVI 99
D + +D RL VE A G R D S R ++ ++
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V ++ R+ V + E+ AL+ D ++
Sbjct: 124 TGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>gi|345312744|ref|XP_003429290.1| PREDICTED: RNA-binding protein 4B-like isoform 2 [Ornithorhynchus
anatinus]
Length = 143
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTN-MELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VNINVE 68
>gi|30678391|ref|NP_850933.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|30678398|ref|NP_563665.3| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|3929368|sp|O22315.1|SFRS1_ARATH RecName: Full=Pre-mRNA-splicing factor SF2; AltName: Full=SR1
protein
gi|6056417|gb|AAF02881.1|AC009525_15 alternative splicing factor SF2a [Arabidopsis thaliana]
gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis thaliana]
gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein SF-2 [Arabidopsis thaliana]
gi|332189356|gb|AEE27477.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|332189358|gb|AEE27479.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
Length = 303
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------------QRPTKTLFVI 99
D + +D RL VE A G R D S R ++ ++
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V ++ R+ V + E+ AL+ D ++
Sbjct: 124 TGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>gi|301116808|ref|XP_002906132.1| pre-mRNA-splicing factor SF2 [Phytophthora infestans T30-4]
gi|262107481|gb|EEY65533.1| pre-mRNA-splicing factor SF2 [Phytophthora infestans T30-4]
Length = 297
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
++VGN + R E+E +F KYGRI +D+K FAFV FED RDA DAIRG D
Sbjct: 6 VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDG- 64
Query: 60 PFGYDRRRLSVEWAR-GERGRHRDGSKSMA----NQRPTK--TLFVINFDPIRTRERDIK 112
+ YD RL VE A G R RD ++ A N R T+ V N P R +D+K
Sbjct: 65 -YDYDGARLRVEAANGGRRESARDSARGSARYPRNIRGNGEFTVEVSNL-PPRVSWQDLK 122
Query: 113 RHFEPYGNVLHVRIR-RNFAFVQFETQEEATKALESTDRSKL 153
G+V + R V++ + + A+E D ++
Sbjct: 123 DFMRKAGDVTFTEVDGRGGGVVEYSNKRDMKYAVEKLDDTEF 164
>gi|328712077|ref|XP_003244723.1| PREDICTED: RNA-binding protein lark-like isoform 2 [Acyrthosiphon
pisum]
Length = 389
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T S++ LF KYG++ D+ F FV+ +DD AI+ L+ +
Sbjct: 52 IFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALNGSMV--N 109
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A RG + PT +FV N T+ +++ F YG V+
Sbjct: 110 DLAMKVEAATSRRGPN----------TPTTKIFVGNLSET-TKANEVRELFGRYGTVVEC 158
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLV 154
I R + FV ++STD S+L+
Sbjct: 159 DIVRTYGFVH----------IDSTDVSRLI 178
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+F+ N +T DI+ FE YG V+ + +NF FV + A+++ + S + D
Sbjct: 52 IFIGNLSE-KTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALNGSMVND 110
Query: 156 RVISVEYA 163
+ VE A
Sbjct: 111 LAMKVEAA 118
>gi|350408072|ref|XP_003488292.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Bombus impatiens]
Length = 394
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 38/183 (20%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMW-------FNCFFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V I+ + FV+F+ +A A+ + +L+ I+VE A D RG
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERARGTPRGSDQWRYGDSRG 142
Query: 181 GYG 183
GYG
Sbjct: 143 GYG 145
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 45/197 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGE 118
Query: 65 RRRLSVEWARG------------ERGRHRDGSKS----MANQR----------------- 91
R ++VE ARG RG + D +S M + R
Sbjct: 119 R--ITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTASSYKQSL 176
Query: 92 -----PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEA 141
PT+T + + + + +R +D+K + G V + + RRN V+F T +
Sbjct: 177 PRYGPPTRTEYRLTVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFATYSDL 236
Query: 142 TKALESTDRSKLVDRVI 158
A++ D ++L R I
Sbjct: 237 KNAIDKLDDTELNGRRI 253
>gi|242052807|ref|XP_002455549.1| hypothetical protein SORBIDRAFT_03g013010 [Sorghum bicolor]
gi|241927524|gb|EES00669.1| hypothetical protein SORBIDRAFT_03g013010 [Sorghum bicolor]
Length = 186
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG+ +S + R + ++ P
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQSYSYDRSSSYSSARRGGVSRRSDFRVMVTGLPSSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D S+
Sbjct: 124 QDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQF 172
>gi|328786023|ref|XP_623841.3| PREDICTED: RNA-binding protein lark-like isoform 1 [Apis mellifera]
Length = 356
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD-NIPFGY 63
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+ +I G
Sbjct: 12 IFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIVHG- 70
Query: 64 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
+ + E A+ +G + PT +FV N T+ ++ F YG V+
Sbjct: 71 --QEIKCEAAKSRKGPN----------TPTTKIFVGNLTD-NTKAPQVRELFAKYGTVVE 117
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I RN+ FV E + A++ + + + + V+ +
Sbjct: 118 CDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQIS 157
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIRG 55
R +++GN YE +L+R+FS++G IE V + GF +V F++ DA AI
Sbjct: 192 RTLYIGNLYYEVTADQLQRVFSRFGEIENVKIIYDNRGLSRGFGYVEFKNIPDAQTAIDN 251
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
LD F + R L V++ R + G ++ + N P+KTLF+ N ++D+ F
Sbjct: 252 LDMQVF--EGRNLVVQFHREKPGFGKNNRANSTNS-PSKTLFIGNMS-FEMSDKDLNDLF 307
Query: 116 EPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
NV+ VR+ R FA F AT A + R + ++++
Sbjct: 308 REVRNVVDVRVAIDRRTGQPRGFAHADFLDIASATHAKNILANKVVYGRELRIDFSHPAI 367
Query: 168 SERDDRYDS 176
RD R DS
Sbjct: 368 ESRDKRADS 376
>gi|328712079|ref|XP_001943947.2| PREDICTED: RNA-binding protein lark-like isoform 1 [Acyrthosiphon
pisum]
Length = 374
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T S++ LF KYG++ D+ F FV+ +DD AI+ L+ +
Sbjct: 52 IFIGNLSEKTTSSDIRPLFEKYGKVVECDVMKNFGFVHMDDDTTGRAAIKALNGSMV--N 109
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A RG + PT +FV N T+ +++ F YG V+
Sbjct: 110 DLAMKVEAATSRRGPN----------TPTTKIFVGNLSET-TKANEVRELFGRYGTVVEC 158
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLV 154
I R + FV ++STD S+L+
Sbjct: 159 DIVRTYGFVH----------IDSTDVSRLI 178
>gi|71996524|ref|NP_495307.3| Protein RSP-5, isoform a [Caenorhabditis elegans]
gi|50897847|sp|Q10021.3|RSP5_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 5;
AltName: Full=CeSC35-2; AltName: Full=RNA-binding
protein srp-3
gi|351064335|emb|CCD72697.1| Protein RSP-5, isoform a [Caenorhabditis elegans]
Length = 208
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDG 83
RL VE ARG+ RG R G
Sbjct: 64 SMRLVVEMARGKPRGNDRHG 83
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|115452963|ref|NP_001050082.1| Os03g0344100 [Oryza sativa Japonica Group]
gi|113548553|dbj|BAF11996.1| Os03g0344100 [Oryza sativa Japonica Group]
Length = 264
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA +A G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN---------QRPTKTLFVINFDPIRT 106
D + +D RL VE A G RG +N R ++ ++ P
Sbjct: 65 RDG--YNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSA 122
Query: 107 RERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A++ D S+
Sbjct: 123 SWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|413955773|gb|AFW88422.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 283
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYG+I +D+K G+AFV FED RDA +AI G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL----------FVINFDPIR 105
D + +D RL VE A G RG +S ++ P
Sbjct: 65 RDG--YNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLPSS 122
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEATKALESTD 149
+D+K H G+V + R + ++ + A K L+ T+
Sbjct: 123 ASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTE 173
>gi|307187784|gb|EFN72750.1| RNA-binding protein lark [Camponotus floridanus]
Length = 331
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + + E + R G + PT +FV N T+ ++ F YG V+
Sbjct: 66 -HMVHGQPIKCEAAKSRKGPNT-----PTTKIFVGNLTD-NTKAPQVRELFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV E + A++ + ++VD
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELN-GQIVD 148
>gi|225437350|ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
vinifera]
gi|359480272|ref|XP_003632425.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
vinifera]
Length = 296
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YDFDGHRLRVELAHGGRG 85
>gi|219363191|ref|NP_001137034.1| uncharacterized protein LOC100217203 [Zea mays]
gi|52140005|gb|AAU29328.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
gi|194693886|gb|ACF81027.1| unknown [Zea mays]
gi|194698082|gb|ACF83125.1| unknown [Zea mays]
gi|413955774|gb|AFW88423.1| ASF/SF2-like pre-mRNA splicing factor SRP32 isoform 1 [Zea mays]
gi|413955775|gb|AFW88424.1| ASF/SF2-like pre-mRNA splicing factor SRP32 isoform 2 [Zea mays]
Length = 285
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYG+I +D+K G+AFV FED RDA +AI G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL----------FVINFDPIR 105
D + +D RL VE A G RG +S ++ P
Sbjct: 65 RDG--YNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLPSS 122
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-------FVQFETQEEATKALESTD 149
+D+K H G+V + R + ++ + A K L+ T+
Sbjct: 123 ASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTE 173
>gi|91091338|ref|XP_966697.1| PREDICTED: similar to hnRNP protein [Tribolium castaneum]
Length = 282
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y T + +LER F YGR+ V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELNGKKLLGE 65
Query: 65 RRRLSVEWARGE-RGRHRDGSKS--MANQR---PTKT---LFVINFDPIRTRERDIKRHF 115
R++VE ARG RGR + S+S +++R PT+T L V N R +D+K +
Sbjct: 66 --RVTVERARGTPRGRDQWSSRSDHRSHERYGPPTRTNYRLIVENLSS-RISWQDLKDYM 122
Query: 116 EPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
G V + + RN V+F + + A+E D ++L R I
Sbjct: 123 RQAGEVTYADAHKQHRNEGVVEFASYSDLKNAIEKLDDTELNGRRI 168
>gi|76573323|gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tuberosum]
Length = 269
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRG 55
SR I+VGN + ++ E+E LF KYGRI +++K + FV FE RDA DAIRG
Sbjct: 5 FSRSIYVGNLPADIKELEVEDLFYKYGRILDIELKIPPRPPCYCFVEFESSRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL---------------FVIN 100
D + +D RL VE A G RG + + +I
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSSSDRRGSYGSSGGGGGGGGRHGISRHSDYRVIIR 122
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + R+ F V + E+ A+ D ++
Sbjct: 123 GLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYEDMKYAIRKLDDTEF 179
>gi|169404002|ref|NP_955868.1| serine/arginine-rich splicing factor 4 [Danio rerio]
gi|326676581|ref|XP_003200617.1| PREDICTED: hypothetical protein LOC321872 [Danio rerio]
gi|28461393|gb|AAH46895.1| Zgc:55809 [Danio rerio]
gi|182890456|gb|AAI64410.1| Zgc:55809 protein [Danio rerio]
Length = 366
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR ++VG Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKD 59
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQR----------------PTKT---LFVINF 101
+R+ VE G+R RDG PT+T L V N
Sbjct: 60 LCG--KRVIVEHTIGQR---RDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENL 114
Query: 102 DPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + R+N ++F + +ALE D +++ R I
Sbjct: 115 SS-RCSWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 173
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|448878372|gb|AGE46149.1| arginine/serine-rich splicing factor SR27 transcript II [Sorghum
bicolor]
Length = 165
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 7/83 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR 79
D + +D RL VE A G RG+
Sbjct: 66 DG--YNFDGYRLRVELAHGGRGQ 86
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|307195687|gb|EFN77529.1| RNA-binding protein lark [Harpegnathos saltator]
Length = 325
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + + E + R G + PT +FV N T+ ++ F YG V+
Sbjct: 66 -HMVHGQPIKCEAAKSRKGPNT-----PTTKIFVGNLTD-NTKAPQVRELFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV E + A++ + ++VD
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELN-GQIVD 148
>gi|380021805|ref|XP_003694747.1| PREDICTED: RNA-binding protein lark-like [Apis florea]
Length = 351
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD-NIPFGY 63
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+ +I G
Sbjct: 12 IFIGNLADKTTNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIVHG- 70
Query: 64 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
+ + E A+ +G + PT +FV N T+ ++ F YG V+
Sbjct: 71 --QEIKCEAAKSRKGPN----------TPTTKIFVGNLTD-NTKAPQVRELFAKYGTVVE 117
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I RN+ FV E + A++ + + + + V+ +
Sbjct: 118 CDIVRNYGFVHLEATGDVNDAIKELNGRMVDGQAMKVQIS 157
>gi|427777641|gb|JAA54272.1| Putative sf2 [Rhipicephalus pulchellus]
Length = 223
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E LF K+G+I +D+K+ FAFV F+D RDA DA++ D
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVQARDG-- 67
Query: 61 FGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YD RL VE+ RG RG G R ++ +++ P +D+K H
Sbjct: 68 YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQYRVLVSGLPPSGSWQDLKDHMRE 127
Query: 118 YGNVLHVRIRRN----FAFVQFETQEEATKALEST 148
G+V + + ++ F+++E + A K L+ +
Sbjct: 128 AGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|440907568|gb|ELR57702.1| Serine/arginine-rich splicing factor 4, partial [Bos grunniens
mutus]
Length = 488
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 25/170 (14%)
Query: 8 GNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67
G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ + R
Sbjct: 1 GRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE--R 58
Query: 68 LSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRERDI 111
+ VE ARG R RDGS PT+T L V N R +D+
Sbjct: 59 VIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSWQDL 114
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 115 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 164
>gi|301616205|ref|XP_002937556.1| PREDICTED: hypothetical protein LOC100490607 [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 16/169 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVG EL++LF +YG++ D+ +AFV+ E ++DA AI L F
Sbjct: 4 IFVGGVSPSASPDELKKLFERYGQVNECDILKNYAFVHMEREQDAHRAISELHKQEFY-- 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
L+VE+A + R+ +K ++V N R +K FE +G V+
Sbjct: 62 GSHLTVEYA---TSKIRNATK----------IYVGNVSS-RATTSQVKELFEKFGKVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR 173
I +N+AFV + EA A+ + + L D+ I V + +++ ++ +
Sbjct: 108 DIVKNYAFVHMAKEREAMDAILHLNDTPLEDQKIFVTLSKSNNAPKNSK 156
>gi|322797564|gb|EFZ19608.1| hypothetical protein SINV_13630 [Solenopsis invicta]
Length = 324
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + + E + R G + PT +FV N T+ ++ F YG V+
Sbjct: 66 -HMVHGQPIKCEAAKSRKGPNT-----PTTKIFVGNLTD-NTKAPQVRELFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV E + A++ + ++VD
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELN-GQIVD 148
>gi|147853033|emb|CAN81258.1| hypothetical protein VITISV_000965 [Vitis vinifera]
Length = 720
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YDFDGHRLRVELAHGGRG 85
>gi|351706306|gb|EHB09225.1| RNA-binding protein 4B [Heterocephalus glaber]
Length = 333
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN +E + E+ LF +YG++ + + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPWEASEQEICSLFEQYGKVLESGIIKNYGFVHIEDKTAAEDAIRNLHH--YKLY 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + ++ F YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTVTNQ-GLRGKFAEYGPVIKC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL------VDRVISVEYALKDDSERDDRYDSPR 178
I +++AFV E E+ +A+ D ++ V IS + E+ Y +
Sbjct: 108 DIVKDYAFVHMEQAEDEVEAIRGLDDTEFQGQRVYVQLSISSLWTAPGMGEQSGCYRCGK 167
Query: 179 RGGYGRHSP 187
G + P
Sbjct: 168 EGHWSEECP 176
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN L F++YG + + D+ +AFV+ E D +AIRGLD+ F
Sbjct: 77 STKLHVGNISPTVTNQGLRGKFAEYGPVIKCDIVKDYAFVHMEQAEDEVEAIRGLDDTEF 136
Query: 62 G----YDRRRLSVEW---ARGER-GRHRDG 83
Y + +S W GE+ G +R G
Sbjct: 137 QGQRVYVQLSISSLWTAPGMGEQSGCYRCG 166
>gi|30678395|ref|NP_850934.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
gi|22135918|gb|AAM91541.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
gi|30023782|gb|AAP13424.1| At1g02840 [Arabidopsis thaliana]
gi|332189357|gb|AEE27478.1| Pre-mRNA-splicing factor SF2 [Arabidopsis thaliana]
Length = 285
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------------QRPTKTLFVI 99
D + +D RL VE A G R D S R ++ ++
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V ++ R+ V + E+ AL+ D ++
Sbjct: 124 TGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>gi|357464169|ref|XP_003602366.1| RNA-binding protein [Medicago truncatula]
gi|355491414|gb|AES72617.1| RNA-binding protein [Medicago truncatula]
Length = 273
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG---------------------RHRDGSKSMANQRPTK 94
D + +D RL VE A G RG G R ++
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFGVSRHSE 122
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDR 150
++ P +D+K H G+V + R+ F V + ++ A+ D
Sbjct: 123 FRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDD 182
Query: 151 SKL 153
++
Sbjct: 183 TEF 185
>gi|357464167|ref|XP_003602365.1| RNA-binding protein [Medicago truncatula]
gi|355491413|gb|AES72616.1| RNA-binding protein [Medicago truncatula]
Length = 272
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG---------------------RHRDGSKSMANQRPTK 94
D + +D RL VE A G RG G R ++
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFGVSRHSE 122
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDR 150
++ P +D+K H G+V + R+ F V + ++ A+ D
Sbjct: 123 FRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDD 182
Query: 151 SKL 153
++
Sbjct: 183 TEF 185
>gi|225450797|ref|XP_002283865.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Vitis vinifera]
Length = 288
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG+ + R ++ ++ P
Sbjct: 66 DG--YNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 151
+D+K H G+V ++ R V + ++ A+ D S
Sbjct: 124 QDLKDHMRRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDS 170
>gi|5815235|gb|AAD52609.1|AF173640_1 splicing factor SR1 [Arabidopsis thaliana]
Length = 307
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|224285040|gb|ACN40249.1| unknown [Picea sitchensis]
Length = 398
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+SE+E LF KYGRI +D+K G+ F+ F++ RDA DAIRG D
Sbjct: 8 IYVGNLPGDIRESEIEDLFYKYGRIIDIDLKLPPRPPGYCFIEFDNARDAEDAIRGRDG- 66
Query: 60 PFGYDRRRLSVEWARGERG--------RHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ +D RL VE A G S +R T +++ P +D+
Sbjct: 67 -YKFDGHRLRVERAHGRASSVDVYYGSHSSGSRSSGLYRRSTGYRVIVHGLPTSASWQDL 125
Query: 112 KRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
K H G+V ++ R V + + E+ A+ D S+
Sbjct: 126 KDHMRRAGDVCFSQVYRKGSGTVGVVDYTSYEDMKYAIRKLDDSEF 171
>gi|297743877|emb|CBI36847.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEESRDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D F D RL VE A G RG
Sbjct: 66 DGYDF--DGHRLRVELAHGGRG 85
>gi|357621997|gb|EHJ73625.1| RNA-binding protein lark [Danaus plexippus]
Length = 341
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN +T ++L LF K+G + D+ + FV+ E+++ +AI+ L+
Sbjct: 9 IFVGNLSDKTTDADLRPLFEKFGTVVECDIVRNYGFVHMENEQVGREAIQNLNG------ 62
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
E G+ + A PT +FV N +TR +++ F+ +G V+
Sbjct: 63 ------EVVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD-KTRAPEVRELFQKFGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER------DDRYDSPR 178
I RN+ FV + + +A++ + + + + V+ + +R + Y R
Sbjct: 116 DIVRNYGFVHLDASGDVNEAIKELNGMMVDGQPMKVQLSTSRVRQRPGMGDPEQCYRCGR 175
Query: 179 RGGYGRHSPYGRSP 192
G + + P P
Sbjct: 176 GGHWSKECPKAMGP 189
>gi|297843082|ref|XP_002889422.1| hypothetical protein ARALYDRAFT_311385 [Arabidopsis lyrata subsp.
lyrata]
gi|297335264|gb|EFH65681.1| hypothetical protein ARALYDRAFT_311385 [Arabidopsis lyrata subsp.
lyrata]
Length = 297
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI+G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIQGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|67471417|ref|XP_651660.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56468428|gb|EAL46274.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449709320|gb|EMD48605.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 379
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N + T + +++LF KYG I++V + G AF+ F D RDA A L+
Sbjct: 25 SRILFVRNICFNTNEESIKKLFEKYGEIKKVFCQIENRGIAFITFYDIRDAIKAHEELNK 84
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVI--NFDPIRTRERDIKRHFE 116
G ++ + + D K+ AN L+VI F I T + +I +FE
Sbjct: 85 KEIGGRPIKIHYSLPKDNEINNMDSLKNHAN------LYVILRGFQKIPTND-EIFHYFE 137
Query: 117 PYGNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA--LKDDSER 170
+G V VR + F+++ A KALES++ + + I V+YA K D ER
Sbjct: 138 KFGEVSEVRDSADKITIKFIEYYDSRAAVKALESSNNAHWNEGTIEVKYASFSKKDLER 196
>gi|327283237|ref|XP_003226348.1| PREDICTED: serine/arginine-rich splicing factor 6-like [Anolis
carolinensis]
Length = 343
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 25/175 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +L+R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDLQRFFSGYGRLLEVDLKNGYGFVEFEDSRDAEDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR---------------PTKT---LFVINFDPIRT 106
R+ VE ARG R R RDG + P +T L V N R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYSSRSGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS-RC 119
Query: 107 RERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 SWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRKI 174
>gi|406507553|gb|AFS34620.1| lark, partial [Clunio marinus]
Length = 285
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + T+ +++ LF KYG++ D+ + FV+F+++ DA DA+ L+ + +
Sbjct: 9 LFIGNLDENTKTNDVRPLFEKYGKVVEFDIVKNYGFVHFQNESDAXDAVANLNG--YVIN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A+ R + + +K +FV N +TR +++ FE YG VL
Sbjct: 67 GNAIKVENAKSRRAPNSNTTK----------IFVGNLTE-KTRTAEVRELFEKYGTVLEC 115
Query: 125 RI--RRNFAFVQFETQEEAT 142
+ RN+ FV E +
Sbjct: 116 DVVXCRNYGFVHLEVADNVN 135
>gi|297814065|ref|XP_002874916.1| hypothetical protein ARALYDRAFT_327556 [Arabidopsis lyrata subsp.
lyrata]
gi|297320753|gb|EFH51175.1| hypothetical protein ARALYDRAFT_327556 [Arabidopsis lyrata subsp.
lyrata]
Length = 281
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LFSKYG + ++D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------------------QRPTKTLFV 98
D + +D RL VE A G R D S + R ++ V
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSHDARGSYSGGGRGGRDGGDGGVRGRGPSRRSEYRVV 123
Query: 99 INFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 149
++ P +D+K H G V ++ R+ + +E + A K L+ T+
Sbjct: 124 VSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYAIKKLDDTE 181
>gi|224120944|ref|XP_002318458.1| predicted protein [Populus trichocarpa]
gi|222859131|gb|EEE96678.1| predicted protein [Populus trichocarpa]
Length = 280
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+S++E LF KYGRI V++K + FV FE+ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPADIRESKVEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKS----------------------MANQRPT 93
D + +D RL VE A G RG + + + R +
Sbjct: 65 RDG--YNFDGSRLRVELAHGGRGPSSNDRRGGYGGGGGGGGGGGGGGGGGGGRLGISRHS 122
Query: 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTD 149
+ ++ P +D+K H G+V + R+ V + E+ A+ D
Sbjct: 123 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDGDGTLGLVDYTNHEDMKYAIRKLD 182
Query: 150 RSKL 153
++
Sbjct: 183 DTEF 186
>gi|325303176|tpg|DAA34416.1| TPA_inf: alternative splicing factor ASF/SF2 [Amblyomma variegatum]
Length = 222
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 13/155 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E LF K+G+I +D+K+ FAFV F+D RDA DA+ D
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 67
Query: 61 FGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YD RL VE+ RG RG G R ++ +++ P +D+K H
Sbjct: 68 YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQYRVLVSGLPPSGSWQDLKDHMRE 127
Query: 118 YGNVLHVRIRRN----FAFVQFETQEEATKALEST 148
G+V + + ++ F+++E + A K L+ +
Sbjct: 128 AGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|294460252|gb|ADE75708.1| unknown [Picea sitchensis]
Length = 396
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 31/228 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR-IERVDMKS-------GFAFVYFEDDRDAADAIRGL 56
IF+G ++T + L+ F YG+ ++ V MK GF FV F D A I+
Sbjct: 8 IFIGGISWDTSEDRLKDYFGNYGQVVDVVIMKDRTTGRARGFGFVVFGDPSVADRVIQEK 67
Query: 57 DNIPFGYDRRRLSVE--WARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
I D R + + R E+ ++ + +MA R TK +FV P T E D +++
Sbjct: 68 HTI----DGRAVEAKRVVPRDEQ-QNVQRTSNMAGPR-TKKIFVGGLAPTVT-EDDFRKY 120
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL-K 165
FE +GN+ V + R F F+ +++++ K L+ T +L ++ + V+ A+ K
Sbjct: 121 FEQFGNITDVVVMYDHTTQRHRGFGFITYDSEDAVDKVLQQTFH-QLKEKTVEVKRAIPK 179
Query: 166 DDSERDDRYDSPRRGGYG---RHSPYGRSPSPAYRRRPSPDYGRGRSP 210
D S + R + R YG YG +P AY RP P G G P
Sbjct: 180 DMSPGNTRGSAGRGASYGAPYMQGGYGPTPVGAYGARP-PIAGTGYPP 226
>gi|410930984|ref|XP_003978877.1| PREDICTED: uncharacterized protein LOC101068731 [Takifugu rubripes]
Length = 379
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 22/172 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ +D+K+G+ FV FED+RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR------------PTKT---LFVINFDPIRTRER 109
R+ VE ARG R R RD + P +T L V N R +
Sbjct: 64 --RVIVEHARGPR-RDRDFYGGGSGYSSRSRTGRDKYGPPVRTEYRLVVENLSS-RCSWQ 119
Query: 110 DIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
D+K G V + + R N ++F + + +AL+ D + + R I
Sbjct: 120 DLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMKRALDKLDGTDINGRKI 171
>gi|221128969|ref|XP_002161622.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Hydra
magnipapillata]
Length = 277
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN-I 59
MS +FVGN E R +LE F +YG+I R D+K F F+ FED RDA AI+ +N
Sbjct: 1 MSSELFVGNLNPEVRVRDLENCFGRYGKIVRCDLKKNFGFIQFEDRRDAEIAIQKENNRR 60
Query: 60 PFGYDRRRLSVEWARGERG 78
G D ++VEWARG G
Sbjct: 61 LLGSD---MTVEWARGTVG 76
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 40/180 (22%)
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 152
+ LFV N +P R RD++ F YG ++ +++NF F+QFE + +A A++ + +
Sbjct: 2 SSELFVGNLNP-EVRVRDLENCFGRYGKIVRCDLKKNFGFIQFEDRRDAEIAIQKENNRR 60
Query: 153 LVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD--YGRGRSP 210
L+ ++VE+A RG G G P P +R+ SPD GRG P
Sbjct: 61 LLGSDMTVEWA---------------RGTVGDKM-RGNGP-PPFRKPHSPDRFQGRGGPP 103
Query: 211 AYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPN----FGRYRSRSPVRRS 266
R P P GR RSP+ GR+RSP GR R RSP+ RS
Sbjct: 104 FISRPRSP-------PVRGRDRSPI---------LRGRDRSPGIRQAMGRGRERSPLGRS 147
>gi|166844|gb|AAA32856.1| ribonucleoprotein [Arabidopsis thaliana]
gi|1582992|prf||2119375A Ser/Arg-rich protein
Length = 303
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------------QRPTKTLFVI 99
D + +D RL VE A G R D S R ++ ++
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+ +D+K H G+V ++ R+ V + E+ AL+ D ++
Sbjct: 124 TWLASSASWQDLKDHIAKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>gi|346471975|gb|AEO35832.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 13/155 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E LF K+G+I +D+K+ FAFV F+D RDA DA+ D
Sbjct: 10 IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 67
Query: 61 FGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YD RL VE+ RG RG G R ++ +++ P +D+K H
Sbjct: 68 YDYDGYRLRVEFPRGSAPGRGSMGPGRGRGPPARRSQYRVLVSGLPPSGSWQDLKDHMRE 127
Query: 118 YGNVLHVRIRRN----FAFVQFETQEEATKALEST 148
G+V + + ++ F+++E + A K L+ +
Sbjct: 128 AGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|440803033|gb|ELR23947.1| hypothetical protein ACA1_075260 [Acanthamoeba castellanii str.
Neff]
Length = 178
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR+ +LE FSKYGRI R+DMK+G+AF+ + D RDA DA+RG+D D
Sbjct: 8 VYVGRLSSRTRERDLEDAFSKYGRIIRLDMKAGYAFIEYNDSRDADDAVRGMDGNDL--D 65
Query: 65 RRRLSVE 71
R+SVE
Sbjct: 66 GARISVE 72
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
RTRERD++ F YG ++ + ++ +AF+++ +A A+ D + L ISVE
Sbjct: 16 RTRERDLEDAFSKYGRIIRLDMKAGYAFIEYNDSRDADDAVRGMDGNDLDGARISVE 72
>gi|388515137|gb|AFK45630.1| unknown [Medicago truncatula]
Length = 259
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 6 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D F D RL VE A G RG RH S S R + ++ P
Sbjct: 66 DGYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A+ D S+
Sbjct: 124 WQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEF 173
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNL-MIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
>gi|51854465|gb|AAU10844.1| putative SF2/ASF splicing modulator Srp30 [Oryza sativa Japonica
Group]
Length = 145
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRER 109
+ +D RL VE A G RG D + A +R + V P +
Sbjct: 66 HG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQ 122
Query: 110 DIKRHFEPYGNVL 122
D+K H G+V
Sbjct: 123 DLKDHMRRAGDVC 135
>gi|224128490|ref|XP_002320345.1| predicted protein [Populus trichocarpa]
gi|222861118|gb|EEE98660.1| predicted protein [Populus trichocarpa]
Length = 168
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YDFDGHRLRVELAHGGRG 85
Score = 37.0 bits (84), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-----NFAFVQFETQEEATK 143
+ R ++TL+V N P RER+++ F YG + H+ ++ +AFV+FE +A
Sbjct: 2 SSRASRTLYVGNL-PGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED 60
Query: 144 ALESTD 149
A+ D
Sbjct: 61 AIRGRD 66
>gi|170045710|ref|XP_001850441.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
gi|167868651|gb|EDS32034.1| arginine/serine-rich splicing factor [Culex quinquefasciatus]
Length = 241
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 37/226 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED+RDA DA++ D
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDNRDADDAVKARDG-- 67
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMAN--------------------QRPTKTLFVIN 100
+ YD RL VE+ RG GS+ + R ++ V+
Sbjct: 68 YDYDGYRLRVEFPRGGGPGSYRGSRGSTSGDRGGGSSGRDRGGNNRGPPARRSQFRVVVT 127
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVIS 159
P +D+K H G+V + ++ V++ E+ A++ D S+
Sbjct: 128 GLPASGSWQDLKDHMREAGDVCFADVYKDGTGVVEYLRHEDMKYAIKKLDDSRFRSHEGE 187
Query: 160 VEYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
V Y +++DS DD RRGG G H SP RRR +P Y
Sbjct: 188 VAYIRVREDSGNDD-----RRGG-GEHRDRSYSPR---RRRGTPTY 224
>gi|217073712|gb|ACJ85216.1| unknown [Medicago truncatula]
Length = 246
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 6 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D F D RL VE A G RG RH S S R + ++ P
Sbjct: 66 DGYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A+ D S+
Sbjct: 124 WQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEF 173
>gi|383848340|ref|XP_003699809.1| PREDICTED: RNA-binding protein lark-like [Megachile rotundata]
Length = 351
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + + + E + R G + PT +FV N T+ ++ F YG V+
Sbjct: 66 -QIVHGQPIKCEAAKSRKGPNT-----PTTKIFVGNLTD-NTKAPQVRELFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV E + A++ + ++VD
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELN-GQMVD 148
>gi|108708090|gb|ABF95885.1| Pre-mRNA splicing factor SF2, putative, expressed [Oryza sativa
Japonica Group]
Length = 236
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA +A G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN---------QRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG +N R ++ ++ P
Sbjct: 66 DG--YNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSAS 123
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A++ D S+
Sbjct: 124 WQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDSEF 173
>gi|302781020|ref|XP_002972284.1| hypothetical protein SELMODRAFT_97566 [Selaginella moellendorffii]
gi|300159751|gb|EFJ26370.1| hypothetical protein SELMODRAFT_97566 [Selaginella moellendorffii]
Length = 288
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 34/180 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+SE++ LF KYGRI +D+K G+AF+ F+D RDA DAI+
Sbjct: 5 SRTIYVGNLPGDVRESEIDDLFYKYGRILDIDLKLPPRPPGYAFIEFDDPRDAEDAIKAR 64
Query: 57 DNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMAN-------------------QRPTKTL 96
D F D RL VE+A G RG G +N R ++
Sbjct: 65 DGYVF--DGHRLRVEFAHSGGRGHPSYGGDRHSNSYRGGGGGGGGGGGGGRGVSRRSEYR 122
Query: 97 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 149
V+ P +D+K H G+V ++ R F ++ + A + L+ T+
Sbjct: 123 VVVTGLPSSASWQDLKDHMRTAGDVCFAQVFRESNGTRGIVDFTNYDDMKNAIRKLDDTE 182
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+K+G I ++ + GF FV F + +A A++ L +
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD- 110
+L V A+ + RH + K + + L+V N D T + D
Sbjct: 215 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD--ETVDDDG 272
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K+ FE YGN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 273 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 332
>gi|5815239|gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana]
Length = 270
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|332031363|gb|EGI70876.1| RNA-binding protein lark [Acromyrmex echinatior]
Length = 355
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNG------ 65
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ + + E + R G + PT +FV N T+ ++ F YG V+
Sbjct: 66 -HMVHGQPIKCEAAKSRKGPNT-----PTTKIFVGNLTD-NTKAPQVRELFAKYGTVVEC 118
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV E + A++ + ++VD
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELN-GQIVD 148
>gi|198421232|ref|XP_002126906.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
isoform 1 [Ciona intestinalis]
Length = 272
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G + R++++E F YG+I + +K+GF FV F+D+RDA DAI L+ +
Sbjct: 7 VYIGRLSHRARENDVEHFFRGYGKINDLMLKNGFGFVIFDDERDADDAIHDLNGKSLCGE 66
Query: 65 RRRLSVEWA--RGERGRH-----------RDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
R L + RG G R +K + N L V N R +D+
Sbjct: 67 RVMLEIAKGTPRGPGGESSSSSYYQQQQPRSSTKGIPNH--GYRLIVENLSS-RVTWQDL 123
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
K + G V++ R RRN V+F +++E A+E + +++ R I + +K
Sbjct: 124 KDYMRQCGEVVYADANRYRRNEGVVEFSSRKEMKYAIEKLNGTEINGRHIKLTPNIK 180
>gi|426247384|ref|XP_004017466.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2 [Ovis
aries]
Length = 200
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR + ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL-VDRVISVEYALKDDS 168
G+V + ++++ V++ +E+ AL D +K + + A+KD S
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKFRSHECMKINLAMKDAS 186
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + E + + E LF YG I V ++ GF FV FE+ DA A+ L+
Sbjct: 226 VYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALN 285
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ Y + L V A+ + R ++ K + K LF+ N D E+
Sbjct: 286 DTE--YKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEK- 342
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F P+G + R+ R F FV F T EEAT+A+ ++ + + + V A
Sbjct: 343 LKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIA 402
Query: 164 LKDDSER 170
+ D R
Sbjct: 403 QRKDVRR 409
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI ++
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAIN 192
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ ++ +R D +++ ++V N D + E D + F+P
Sbjct: 193 GMLLNGQEVYVAPHVSKKDRQSKLDEARANFT-----NVYVKNLD-LEATEEDFENLFKP 246
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
YG + V + R F FV FE E+A KA+E+ + ++ + + V
Sbjct: 247 YGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYV 296
>gi|296089689|emb|CBI39508.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG+ + R ++ ++ P
Sbjct: 66 DG--YNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 151
+D+K H G+V ++ R V + ++ A+ D S
Sbjct: 124 QDLKDHMRRAGDVCFSQVFRGRGGMTGIVDYTNYDDMKYAIRKLDDS 170
>gi|410911524|ref|XP_003969240.1| PREDICTED: uncharacterized protein LOC101080136 isoform 2 [Takifugu
rubripes]
Length = 374
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R++++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQ---------------RPTKT---LFVINFD 102
+ R+ VE +G R RDG S ++ P +T L V N
Sbjct: 60 LCGE--RVIVEHTKGPR---RDGGYSGRSKPRPGGYGRWGRDRYGPPIRTDYRLIVENLS 114
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + R+N ++F + +ALE D +++ R I
Sbjct: 115 S-RCSWQDLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 172
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + E + E E LF+ YG+I + D KS GF FV +E+ + A +A+ L+
Sbjct: 244 IYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALN 303
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 304 DKEI--NGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFVKNLDDQIDSEK- 360
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 361 LEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 420
Query: 164 LKDDSER 170
+ D R
Sbjct: 421 QRKDVRR 427
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + S + + L V N P T +++ FE YG V+
Sbjct: 61 ------------HGVCINVEASKNKSKASTKLHVGNISPTCTN-LELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYD 64
D
Sbjct: 137 QGD 139
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
LF+ N P E++I+ FE YG VL I +N+ FV E + A A+ + KL
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 VCINVE 68
>gi|30679143|ref|NP_567235.3| splicing factor SR1B [Arabidopsis thaliana]
gi|332656770|gb|AEE82170.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 278
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LFSKYG + ++D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN------------------QRPTKTLFV 98
D + +D L VE A G R D S + R ++ V
Sbjct: 66 DG--YDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVV 123
Query: 99 INFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTD 149
++ P +D+K H G V ++ R+ V + + E+ AL+ T+
Sbjct: 124 VSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDTE 178
>gi|71996546|ref|NP_495308.3| Protein RSP-5, isoform d [Caenorhabditis elegans]
gi|351064338|emb|CCD72700.1| Protein RSP-5, isoform d [Caenorhabditis elegans]
Length = 208
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDG 83
RL VE ARG+ RG R G
Sbjct: 64 SMRLVVEMARGKPRGNDRHG 83
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|5815236|gb|AAD52610.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 289
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|5815237|gb|AAD52611.1| splicing factor SR1C [Arabidopsis thaliana]
Length = 276
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|444723179|gb|ELW63840.1| Serine/arginine-rich splicing factor 9 [Tupaia chinensis]
Length = 235
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 30 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNQHGLVPFAFVRFEDPRDAEDAIYGRNG- 88
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 89 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 147
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 148 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 184
>gi|425767261|gb|EKV05835.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum
PHI26]
gi|425780059|gb|EKV18081.1| Pre-RNA splicing factor Srp2, putative [Penicillium digitatum Pd1]
Length = 303
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 124/278 (44%), Gaps = 47/278 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+++GN +S++E FS +G +I + + +GF F+ ++D DA D + F
Sbjct: 9 LYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIVPAFHGSDFK 68
Query: 63 YDRRRLSVEWARGERGRH--RDGSKSMANQRPTKTLFVINFDPI-RTRERDIKRHFEPYG 119
+ RL+V++ARG R + + A RP +T+F + + T +D+K G
Sbjct: 69 GE--RLTVQFARGPRRKEAFQGPPDRNALPRPRRTMFRMQISGLPETSWQDLKDFARQSG 126
Query: 120 -NVLHVRIRRNF--AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDS 176
+V++ R FV+FET + A+E D+ + V+S +++ ER
Sbjct: 127 LDVVYSETGREQGRGFVEFETASDLKTAVEKLDQREFKGSVVSCVADIQNFEER------ 180
Query: 177 PRRGGYGRHSPYGRSPSPAY-----RRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRH 231
P R Y SP R P PA RR P P RG SP DH R
Sbjct: 181 PVRDPYRSRSP-PRRPYPATMEEYDRRIPPP---RGYSPR---------------DHYRE 221
Query: 232 RSPVPVYDRRRSPDYGRN----RSPNFGRYRSRSPVRR 265
RSP+P+ RR P Y R+ R+P R P RR
Sbjct: 222 RSPIPI---RRDPYYERDGYARRTPPRPRMEDYPPPRR 256
>gi|302804889|ref|XP_002984196.1| hypothetical protein SELMODRAFT_119951 [Selaginella moellendorffii]
gi|300148045|gb|EFJ14706.1| hypothetical protein SELMODRAFT_119951 [Selaginella moellendorffii]
Length = 298
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 34/180 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+SE++ LF KYGRI +D+K G+AF+ F+D RDA DAI+
Sbjct: 5 SRTIYVGNLPGDVRESEIDDLFYKYGRILDIDLKLPPRPPGYAFIEFDDPRDAEDAIKAR 64
Query: 57 DNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMAN-------------------QRPTKTL 96
D F D RL VE+A G RG G +N R ++
Sbjct: 65 DGYVF--DGHRLRVEFAHSGGRGHPSYGGDRHSNSYRGGGGGGGGGGGGGRGVSRRSEYR 122
Query: 97 FVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 149
V+ P +D+K H G+V ++ R F ++ + A + L+ T+
Sbjct: 123 VVVTGLPSSASWQDLKDHMRTAGDVCFAQVFRESNGTRGIVDFTNYDDMKNAIRKLDDTE 182
>gi|363807302|ref|NP_001242110.1| uncharacterized protein LOC100786491 [Glycine max]
gi|255636783|gb|ACU18725.1| unknown [Glycine max]
Length = 267
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRG 85
>gi|308502850|ref|XP_003113609.1| CRE-RSP-5 protein [Caenorhabditis remanei]
gi|308263568|gb|EFP07521.1| CRE-RSP-5 protein [Caenorhabditis remanei]
Length = 215
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
I++G Y R+ ++ER YGRI + MK GFAFV FED RDA DA LD
Sbjct: 4 IYLGKIPYNARERDIERFLKGYGRITNISMKYGFAFVDFEDHRDAEDACHDLDGKTMDGG 63
Query: 65 RRRLSVEWARGE 76
R+ VE ARG+
Sbjct: 64 SMRVVVEMARGK 75
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149
P RERDI+R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDIERFLKGYGRITNISMKYGFAFVDFEDHRDAEDACHDLD 56
>gi|5815238|gb|AAD52612.1| splicing factor SR1D [Arabidopsis thaliana]
Length = 261
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGHRLRVELAHGGR 84
>gi|74226809|dbj|BAE27050.1| unnamed protein product [Mus musculus]
Length = 339
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+K+G I ++ + GF FV F + +A A++ L +
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD- 110
+L V A+ + RH + K + + L+V N D T + D
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD--ETVDDDG 332
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K+ FE YGN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD--------MKSGFAFVYFEDDRDAADAIRGL 56
++VG+ + +S L FS G + + + G+A+V F+ ADA R +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ---PADAERAM 90
Query: 57 DNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + + I F
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRRSGAGN---------IFIKNLDKV-IDNKSIYDTF 140
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A A++ + L + + V
Sbjct: 141 SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|54291866|gb|AAV32234.1| putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]
Length = 151
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRER 109
+ +D RL VE A G RG D + A +R + V P +
Sbjct: 66 HG--YDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGL-PSSASWQ 122
Query: 110 DIKRHFEPYGNVL 122
D+K H G+V
Sbjct: 123 DLKDHMRRAGDVC 135
>gi|357464165|ref|XP_003602364.1| RNA-binding protein [Medicago truncatula]
gi|355491412|gb|AES72615.1| RNA-binding protein [Medicago truncatula]
Length = 380
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 112 FSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRG 171
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 172 RDG--YNFDGCRLRVELAHGGRG 192
>gi|356516144|ref|XP_003526756.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 263
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+SE+E LF KYGRI +++K + FV F++ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRG 85
>gi|357441751|ref|XP_003591153.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480201|gb|AES61404.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 290
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 37 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 96
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D F D RL VE A G RG RH S S R + ++ P
Sbjct: 97 DGYDF--DGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 154
Query: 108 ERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R V + ++ A+ D S+
Sbjct: 155 WQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEF 204
>gi|238231787|ref|NP_001154080.1| RNA-binding protein 4B [Oncorhynchus mykiss]
gi|225703906|gb|ACO07799.1| RNA-binding protein 4B [Oncorhynchus mykiss]
Length = 165
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+GN + E++ LFS+YG + + FAFV+ +D + A AIR L +
Sbjct: 4 IFIGNVPRGADKDEIQALFSQYGAVTVCAIVKNFAFVHMDDRKSATKAIRSLH--LYKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE +RG+ NQ K L V N + + + +++ FE YG V
Sbjct: 62 GTAINVEASRGK------------NQGAVK-LHVTNVE--KGNDDELRTLFEEYGTVSEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTD 149
I +NFAFV + +EA A++ D
Sbjct: 107 AIVKNFAFVHMDNSDEALDAIKGLD 131
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 18 ELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74
EL LF +YG + + FAFV+ ++ +A DAI+GLDNI F R + + +R
Sbjct: 92 ELRTLFEEYGTVSECAIVKNFAFVHMDNSDEALDAIKGLDNIEFQGKRIHVQISKSR 148
>gi|189204223|ref|XP_001938447.1| RNA binding domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985546|gb|EDU51034.1| RNA binding domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 319
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIR 54
++ +++GN YE +L+R+FS++G +E V + GF +V F + DA AI
Sbjct: 128 NKMLYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDNRGLSRGFGYVEFANMADAQAAID 187
Query: 55 GLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
LD F + R + V++ + + R+ S S P+KTLF+ N ++D+
Sbjct: 188 NLDMQVF--EGRNMVVQYHQPKPNSMSRNASGSFDANAPSKTLFIGNMS-FEMSDKDLND 244
Query: 114 HFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F NV+ VR+ R FA F ATKA E + R + ++Y+
Sbjct: 245 LFRDIRNVMDVRVAIDRRTGQPRGFAHADFIDVASATKAKEVLSEKVIYGRQLRIDYSKP 304
Query: 166 DDSE-RDDRYDSPR 178
SE R R DS +
Sbjct: 305 GTSEQRGKRADSTQ 318
>gi|147788227|emb|CAN71592.1| hypothetical protein VITISV_015931 [Vitis vinifera]
Length = 267
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI V++K + FV FE+ RDA DAIRG
Sbjct: 5 FSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR 79
D + +D RL VE A G RG+
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGQ 86
>gi|147855944|emb|CAN80749.1| hypothetical protein VITISV_040486 [Vitis vinifera]
Length = 282
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRE 108
D + +D RL VE A G RG+ + R ++ ++ P
Sbjct: 66 DG--YNFDGHRLRVELAHGGRGQSSSVDHYSSYSSSSRGGLSRHSEYRVLVTGLPYSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN 129
+D+K H G+V ++ R
Sbjct: 124 QDLKDHMRRAGDVCFSQVFRG 144
>gi|52140007|gb|AAU29330.1| ASF/SF2-like pre-mRNA splicing factor SRP32'' [Zea mays]
Length = 150
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYG+I +D+K G+AFV FED RDA +AI G
Sbjct: 5 WSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGHRLRVEAAHGGRG 85
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
++V N + ET E + F K G + V ++ GF FV +ED DA A+ L+
Sbjct: 230 VYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELN 289
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
F + L V A+ + R + K + R K LFV N D E+
Sbjct: 290 GAEF--KDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSIDDEK- 346
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F P+GN+ V++ R F FV F + EEATKA+ ++ + + + V A
Sbjct: 347 LQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIA 406
Query: 164 LKDDSER 170
+ D R
Sbjct: 407 QRKDVRR 413
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALN 196
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ R ER + +K+ ++V N D + T + + K F
Sbjct: 197 GMLLNGQEIYVAPHLTRKERDSQLEETKAHFT-----NVYVKNID-LETTDEEFKEFFGK 250
Query: 118 YGNVLHVRIRR-------NFAFVQFETQEEATKALESTDRSKLVDRVISV 160
G V V + R F FV +E +A KA+E + ++ D+ + V
Sbjct: 251 IGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFV 300
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 23/180 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+K+G I ++ + GF FV F + +A A++ L +
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD- 110
+L V A+ + RH + K + + L+V N D T + D
Sbjct: 212 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD--ETVDDDG 269
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K+ FE YGN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 270 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 329
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 54 RGLDNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
R +D + F + + + W++ + R G+ + +F+ N D + + I
Sbjct: 25 RAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGN---------IFIKNLDKV-IDNKSIY 74
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L ++ + + FV FET+E A A++ + L + + V
Sbjct: 75 DTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>gi|390462611|ref|XP_003732879.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 6-like [Callithrix jacchus]
Length = 344
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|350416927|ref|XP_003491172.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein lark-like
[Bombus impatiens]
Length = 458
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD-NIPFGY 63
IF+GN +T ++++ LF KYG++ D+ + FV+ E++ +AI+ L+ +I G
Sbjct: 106 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHIVHG- 164
Query: 64 DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH 123
+ + E A+ +G + PT +FV N T+ ++ F YG V+
Sbjct: 165 --QPIKCEAAKSRKGPN----------TPTTKIFVGNLTD-NTKAPQVRELFAKYGTVVE 211
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER------DDRYDSP 177
I RN+ FV E + A++ + + + + V+ + +R + Y
Sbjct: 212 CDIVRNYGFVHLEATGDVNDAIKELNGQMVDGQPMKVQISTSRVRQRPGMGDPEQCYRCG 271
Query: 178 RRGGYGRHSPYG 189
R G + + P G
Sbjct: 272 RGGHWSKECPKG 283
>gi|56270156|gb|AAH87121.1| Splicing factor, arginine/serine-rich 6 [Rattus norvegicus]
Length = 339
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 28/182 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI-SV 160
R +D+K G V + + R N ++F + + +AL+ D +++ R I +
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLI 179
Query: 161 EY 162
EY
Sbjct: 180 EY 181
>gi|52140006|gb|AAU29329.1| ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays]
gi|413955776|gb|AFW88425.1| ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 257
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LF KYG+I +D+K G+AFV FED RDA +AI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEEAIAGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YNFDGHRLRVEAAHGGRG 85
>gi|449456443|ref|XP_004145959.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
[Cucumis sativus]
Length = 248
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + ++ E+E LF KYGRI +++K + FV FE RDA DAIR
Sbjct: 5 FSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRA 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINF-DPIRTRERDI 111
D + +D RL VE A G RG R S + ++++ D + E
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGQGFLLLDYVDMMNLLEXCF 122
Query: 112 KRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+ H G+V + R+ F V + ++ A+ D ++
Sbjct: 123 QDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEF 168
>gi|255564164|ref|XP_002523079.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537641|gb|EEF39264.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 292
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 19/169 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 6 SRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------FVINFDPIRTRE 108
D + +D +L VE A G RG S + ++ P
Sbjct: 66 DG--YDFDGHQLRVELAHGGRGHSSSDRHSSHSGGGRGRGVSRRSEYRVLVTGLPSSASW 123
Query: 109 RDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + E+ A++ D S+
Sbjct: 124 QDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKHAIKKLDDSEF 172
>gi|403290688|ref|XP_003936440.1| PREDICTED: serine/arginine-rich splicing factor 6 [Saimiri
boliviensis boliviensis]
Length = 344
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 118/286 (41%), Gaps = 42/286 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR--IERVDMKS---------GFAFVYFEDDRDAADAI 53
+F+GN + + + +Y +E + + GF F+ F DA A
Sbjct: 234 LFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAF 293
Query: 54 RGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ L ++ FG+ R + V ++ E + D + MA K++F+ P +R +
Sbjct: 294 KRLQKPDVIFGHAERTVKVAFS--EPLQEPD-PEIMAK---VKSVFIDGLPPYWDEDR-V 346
Query: 112 KRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVD--RVISVE 161
++HF+ YG + V + RN F FV F T E A +E ++ LVD I V
Sbjct: 347 RKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDVNKKDLVDGNSKIKVR 406
Query: 162 YALKDDSERDDRYDSPRRGGYGRHSPYGRS---PSPAYRRRPSPDYGRGRSPAYDRYNGP 218
L + + RGG+ P GRS P P RP+ YGR +++ GP
Sbjct: 407 ARLSNPLPKMQAVKGGMRGGFRIGRPNGRSLGRPGPLI-NRPNFQYGRASRGSFNDPAGP 465
Query: 219 VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVR 264
RR P G H +P P P G P G + R PVR
Sbjct: 466 YV--RRHPHRGGHSAPGPSV-----PGRGNFGGPRHG-FIERGPVR 503
>gi|449486099|ref|XP_002195735.2| PREDICTED: serine/arginine-rich splicing factor 6 [Taeniopygia
guttata]
Length = 348
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR------------------PTKTLFVINFDPIRT 106
R+ VE ARG R R RDG + P +T F + + + +
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYSSRSGGGGGYSSRRQSGRDKYGPPVRTEFRLIVENLSS 120
Query: 107 RE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRKI 177
>gi|426247382|ref|XP_004017465.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1 [Ovis
aries]
Length = 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR + ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|407039238|gb|EKE39532.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 697
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI----------ERVDMKSGFAFVYFEDDRDAAD 51
S+ ++V N ++T++ + ++F K GR+ ++V+ SGF FV + DA +
Sbjct: 515 SKTLYVKNISFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYAKHEDAIN 574
Query: 52 AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
AI+ L ++ + + + H++ K + + + L V N P T +++
Sbjct: 575 AIKTLQGKVIDGHAVQIEISQPKVKDEDHKE-RKEIEEHKVSNKLLVKNV-PFETNIKEV 632
Query: 112 KRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ F YG + VR+ + FAFV++ T++EA A+ + S R + +EYA
Sbjct: 633 RELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAMAALKNSHFYGRHLIIEYA- 691
Query: 165 KDDSERD 171
D+E D
Sbjct: 692 -KDTELD 697
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRI------ERVD-MKSGFAFVYFEDDRDAADAI 53
+S + V N +ET E+ LF YG + ++VD GFAFV + ++AA+A+
Sbjct: 614 VSNKLLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAM 673
Query: 54 RGLDNIPFGYDRRRLSVEWAR 74
L N F Y R L +E+A+
Sbjct: 674 AALKNSHF-YG-RHLIIEYAK 692
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147
+++ N P E DI++ F+ +GN+ + + + F FV F ++A KA
Sbjct: 188 IYITNL-PFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNE 246
Query: 148 TDRSKLVDRVISVEYALKD 166
D + R++ V YA D
Sbjct: 247 MDNKFIKGRIVHVTYAKAD 265
>gi|134085783|ref|NP_001076867.1| serine/arginine-rich splicing factor 9 [Bos taurus]
gi|358421698|ref|XP_003585083.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Bos taurus]
gi|133777441|gb|AAI14700.1| SFRS9 protein [Bos taurus]
gi|296478484|tpg|DAA20599.1| TPA: splicing factor, arginine/serine-rich 9 [Bos taurus]
Length = 221
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR + ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|118359250|ref|XP_001012866.1| hypothetical protein TTHERM_00094120 [Tetrahymena thermophila]
gi|89294633|gb|EAR92621.1| hypothetical protein TTHERM_00094120 [Tetrahymena thermophila SB210]
Length = 1438
Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
I+VG + ++ +L LF +YG I + K +AF+ F D AA A++ ++ + +
Sbjct: 1219 IYVGRLQKSVQREDLLNLFGRYGEITDIMRKEDYAFIEFGDSSFAAQAVKEMNG--YNLN 1276
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++ VE AR K A + T L++ P + +++D+ F YG ++ +
Sbjct: 1277 GTKIVVEGAR---------PKDEAKEIKTTRLYIGKIGP-QIKKQDLVITFGGYGELVDI 1326
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ ++AFV+F T A KAL S + ++L I VE A
Sbjct: 1327 LMKDDYAFVEFTTTHAAAKALASMNGARLAGTKIVVEEA 1365
>gi|168011117|ref|XP_001758250.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690706|gb|EDQ77072.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1252
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG--FAFVYFEDDRDAADAIRGLDNI 59
SR +++GN ++ ++ + FS+ G ++ V + S +AFV F + DA +A L
Sbjct: 68 SRHLWIGNVSHDATEAAIREKFSQIGDVDSVTVYSSRNYAFVNFRNLHDAVEAKNRLQGF 127
Query: 60 PFGYDRRRLSVEWARG-----ERGRHRDGS----KSMANQ---RPTKT--LFVINFDPIR 105
G R +E+A+G E R+RD K M Q R T++ L+V P
Sbjct: 128 VIGGMAIR--IEYAKGRNMLSELARYRDKDSDHVKCMEEQVAARATQSRHLWVGGISPNV 185
Query: 106 TRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
T+E+ I+ F YG + ++ RN AFV + E+A A+E+ +R ++ D + V+Y
Sbjct: 186 TKEQ-IEGEFRNYGVLEDFKLLRERNCAFVDYIRIEDAVNAVEALNRKRIGDEELRVDYG 244
Query: 164 LKDDSERDDRYD 175
S+RD R D
Sbjct: 245 RSQPSKRDSRGD 256
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNI 59
SR ++VG + ++E F YG +E + + AFV + DA +A+ L+
Sbjct: 173 SRHLWVGGISPNVTKEQIEGEFRNYGVLEDFKLLRERNCAFVDYIRIEDAVNAVEALNRK 232
Query: 60 PFG-------YDRRRLSVEWARGERGRHRDGSKSMANQR------------------PTK 94
G Y R + S +RG++ +DG S + P++
Sbjct: 233 RIGDEELRVDYGRSQPSKRDSRGDQKSSQDGYNSQHGLQGGSGNGVEGRVKADKDGGPSE 292
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSK 152
L+V P + E ++R F PYG V V+ R +AFVQF+ EEAT+A + D
Sbjct: 293 ILWVGFPLPSKVDEDGLRRAFMPYGEVERVKTFPGRTYAFVQFQKVEEATRAKNALDGKL 352
Query: 153 LVDRVISVEYALKDDSERDDRYDSP 177
D + + Y+ + D D P
Sbjct: 353 FDDPRVHIRYSKSEIGPIDSPRDGP 377
>gi|71996532|ref|NP_495309.3| Protein RSP-5, isoform b [Caenorhabditis elegans]
gi|351064336|emb|CCD72698.1| Protein RSP-5, isoform b [Caenorhabditis elegans]
Length = 166
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDG 83
RL VE ARG+ RG R G
Sbjct: 64 SMRLVVEMARGKPRGNDRHG 83
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>gi|383848642|ref|XP_003699957.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Megachile
rotundata]
Length = 418
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 78/183 (42%), Gaps = 38/183 (20%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +L + F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLVKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMW-------FNCFFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
V I+ + FV+F+ +A A+ + +L+ I+VE A D RG
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGERITVERARGTPRGSDQWRYGDSRG 142
Query: 181 GYG 183
GYG
Sbjct: 143 GYG 145
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 47/198 (23%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELNGKELLGE 118
Query: 65 RRRLSVEWARG------------ERGRHRDGSKS----MANQR----------------- 91
R++VE ARG RG + D +S M + R
Sbjct: 119 --RITVERARGTPRGSDQWRYGDSRGGYGDSRRSARDDMRHDRDSVNRNTRTASSYKQSL 176
Query: 92 -----PTKT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEE 140
PT+T L V N R +D+K + G V + + RRN V+F T +
Sbjct: 177 PRYGPPTRTEYRLIVENLSS-RVSWQDLKDYMRHAGEVTYADAHKQRRNEGVVEFATYSD 235
Query: 141 ATKALESTDRSKLVDRVI 158
A++ D ++L R I
Sbjct: 236 LKNAIDKLDDTELNGRRI 253
>gi|407929152|gb|EKG21988.1| MFS pantothenate transporter [Macrophomina phaseolina MS6]
Length = 345
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 26/181 (14%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIRG 55
R ++VGN Y+T++ +L + FS++G I + + GF +V FE+D AA AI
Sbjct: 162 RTLYVGNLFYQTQEDQLRQEFSRFGNIVKTTIIRDPAGLSRGFGYVEFENDDSAAVAIVQ 221
Query: 56 LDNIPFGYDRRRLSVEWAR-----GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 110
++ D RRL+V+ R ER R R+ + P+KTLF+ N +RD
Sbjct: 222 MNQRVI--DGRRLTVQHHRRREQTEERPRRRNEGRVNP---PSKTLFIGNMS-FEMSDRD 275
Query: 111 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
+ F NVL VR+ R FA F + ATKA E + +L R + V+Y
Sbjct: 276 LNDLFRNIRNVLDVRVAIDRRTGQPRGFAHADFIDETSATKAKELLSQKELYGRRLRVDY 335
Query: 163 A 163
Sbjct: 336 T 336
>gi|449707231|gb|EMD46930.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 685
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI----------ERVDMKSGFAFVYFEDDRDAAD 51
S+ ++V N ++T++ + ++F K GR+ ++V+ SGF FV + DA +
Sbjct: 503 SKTLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAIN 562
Query: 52 AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
AI+ L ++ + + + H++ K + + + L V N P T +++
Sbjct: 563 AIKTLQGKVIDGHAVQIEISQPKVKDEDHKE-RKEIEEHKVSNKLLVKNV-PFETNIKEV 620
Query: 112 KRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ F YG + VR+ + FAFV++ T++EA A+ + S R + +EYA
Sbjct: 621 RELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAMAALKNSHFYGRHLIIEYA- 679
Query: 165 KDDSERD 171
D+E D
Sbjct: 680 -KDTELD 685
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRI------ERVD-MKSGFAFVYFEDDRDAADAI 53
+S + V N +ET E+ LF YG + ++VD GFAFV + ++AA+A+
Sbjct: 602 VSNKLLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAM 661
Query: 54 RGLDNIPFGYDRRRLSVEWAR 74
L N F Y R L +E+A+
Sbjct: 662 AALKNSHF-YG-RHLIIEYAK 680
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147
+++ N P E DI++ F+ +GN+ + + + F FV F ++A KA
Sbjct: 189 IYITNL-PFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNE 247
Query: 148 TDRSKLVDRVISVEYALKD 166
D + R++ V YA D
Sbjct: 248 MDNKFIKGRIVHVTYAKAD 266
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 17/186 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
+F+G ++ E+ SK G ++ + S GFAF+ +E R AA A R
Sbjct: 152 LFIGGIPKMKKRDEILEEISKVTEGVLDVIVYASATDKTKNRGFAFIEYESHRAAAMARR 211
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
L ++++V+WA E D +++ K L+V N I+T E I++
Sbjct: 212 KLMPGRIQLWGQQIAVDWAEPEMDVDEDVMETV------KILYVRNLM-IKTSEETIRKT 264
Query: 115 FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
F +G V V+ R++AFV F ++E+A +A+ S + ++L + V A D E+ RY
Sbjct: 265 FSQFGCVERVKKIRDYAFVHFTSREDAIRAMNSLNGTELEGSCLGVTLAKPVDKEQYARY 324
Query: 175 DSPRRG 180
+G
Sbjct: 325 RKAVKG 330
>gi|325302612|tpg|DAA34674.1| TPA_inf: alternative splicing factor SRp55/B52/SRp75 [Amblyomma
variegatum]
Length = 281
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +F+G+ Y+ R+ +++R F YGR+ + +K+GF FV FED RDA DAI+ L+
Sbjct: 1 MTTRVFIGHLSYQVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKE 60
Query: 61 FGYDRRRLSVEWARGER 77
+ R+SVE A G R
Sbjct: 61 LLGE--RVSVELAHGSR 75
>gi|224967104|ref|NP_080775.3| arginine/serine-rich splicing factor 6 [Mus musculus]
gi|306922366|ref|NP_001014207.2| splicing factor, arginine/serine-rich 6 [Rattus norvegicus]
gi|74197209|dbj|BAE35148.1| unnamed protein product [Mus musculus]
gi|74228832|dbj|BAE21902.1| unnamed protein product [Mus musculus]
gi|148674361|gb|EDL06308.1| splicing factor, arginine/serine-rich 6 [Mus musculus]
gi|149043026|gb|EDL96600.1| similar to dJ862K6.2.2 (splicing factor, arginine/serine-rich 6
(SRP55-2)(isoform 2)), isoform CRA_a [Rattus norvegicus]
Length = 339
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|12836310|dbj|BAB23599.1| unnamed protein product [Mus musculus]
Length = 339
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|67479353|ref|XP_655058.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472162|gb|EAL49670.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 685
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI----------ERVDMKSGFAFVYFEDDRDAAD 51
S+ ++V N ++T++ + ++F K GR+ ++V+ SGF FV + DA +
Sbjct: 503 SKTLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAIN 562
Query: 52 AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
AI+ L ++ + + + H++ K + + + L V N P T +++
Sbjct: 563 AIKTLQGKVIDGHAVQIEISQPKVKDEDHKE-RKEIEEHKVSNKLLVKNV-PFETNIKEV 620
Query: 112 KRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ F YG + VR+ + FAFV++ T++EA A+ + S R + +EYA
Sbjct: 621 RELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAMAALKNSHFYGRHLIIEYA- 679
Query: 165 KDDSERD 171
D+E D
Sbjct: 680 -KDTELD 685
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRI------ERVD-MKSGFAFVYFEDDRDAADAI 53
+S + V N +ET E+ LF YG + ++VD GFAFV + ++AA+A+
Sbjct: 602 VSNKLLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAM 661
Query: 54 RGLDNIPFGYDRRRLSVEWAR 74
L N F Y R L +E+A+
Sbjct: 662 AALKNSHF-YG-RHLIIEYAK 680
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147
+++ N P E DI++ F+ +GN+ + + + F FV F ++A KA
Sbjct: 189 IYITNL-PFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNE 247
Query: 148 TDRSKLVDRVISVEYALKD 166
D + R++ V YA D
Sbjct: 248 MDNKFIKGRIVHVTYAKAD 266
>gi|68035998|gb|AAY84875.1| alternative splicing regulator [Triticum aestivum]
Length = 254
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLD 57
R I+VGN + R+ E+E LF KYG I +D+K +AFV FED RDA DAI G D
Sbjct: 7 RTIYVGNLPEDIREREIEDLFCKYGPIVDIDLKIPPRPPVYAFVEFEDPRDADDAIYGRD 66
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL------FVINFDPIRTRERDI 111
+ +D +L VE A G +G D S + L ++ P +D+
Sbjct: 67 G--YDFDGCKLRVELAHGGKGPSFDRPNSYTSSGRRGALRRSDYRVIVTGLPSSASWQDL 124
Query: 112 KRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
K H G+V + V+F E+ A+ D S+
Sbjct: 125 KDHMRRAGDVCFSDVYPGAGAITGIVEFPNYEDMKHAIRKLDDSEF 170
>gi|348514746|ref|XP_003444901.1| PREDICTED: hypothetical protein LOC100690823 [Oreochromis
niloticus]
Length = 396
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 29/179 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ +D+K+G+ FV FED+RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------------PTKT---LFVINFD 102
R+ VE ARG R R RDG P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYGGGYWGGGRSNGYSSRSRSGRDKYGPPVRTEYRLIVENLS 120
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F T + +AL+ D + + R I
Sbjct: 121 S-RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRTYSDMKRALDKLDGTDINGRKI 178
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E E LF+ YG+I + D KS GF FV +E+ + A DA+ L+
Sbjct: 246 IYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALN 305
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LF+ N D E+
Sbjct: 306 DKEI--NGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLDDQIDSEK- 362
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 363 LEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALA 422
Query: 164 LKDDSER 170
+ D R
Sbjct: 423 QRKDVRR 429
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 29/175 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V + D AI
Sbjct: 62 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAI 121
Query: 54 RGLDNIPFGY-DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
D + + + R + W++ + R G + +F+ N P + +
Sbjct: 122 ---DELNYSLVEGRPCRIMWSQRDPSARRSGDGN---------IFIKNLHP-AIDNKALH 168
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L ++ + F FV +ET E A A+E+ + L DR + V
Sbjct: 169 DTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFV 223
>gi|346468507|gb|AEO34098.1| hypothetical protein [Amblyomma maculatum]
Length = 280
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +F+G+ Y+ R+ +++R F YGR+ + +K+GF FV FED RDA DAI+ L+
Sbjct: 1 MTTRVFIGHLSYQVRERDVDRFFKGYGRVGDIHLKNGFGFVEFEDHRDADDAIKDLNGKE 60
Query: 61 FGYDRRRLSVEWARGER 77
+ R+SVE A G R
Sbjct: 61 LLGE--RVSVELAHGSR 75
>gi|340371197|ref|XP_003384132.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Amphimedon
queenslandica]
Length = 242
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R+ +LE +F KYG++ VD+ ++ FAF+ FED RDA DAIRG D
Sbjct: 11 VYVGNLPGDIRKRDLEDIFYKYGKLVDVDLHDRRETPFAFIEFEDPRDADDAIRGRDG-- 68
Query: 61 FGYDRRRLSVEWARGE---------------RGRHRDGSKSMANQRPTKTLFVINFDPIR 105
+ +D +L VE R G RDG ++ L + P
Sbjct: 69 YMFDGYKLRVELPRSSPRYVGGRGGGGRGYYGGGRRDGYGRGGGRQSGHKLMITGLPPTG 128
Query: 106 TRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+ + DIK HF G+V++ + R+ V+F E A +A+ D SK
Sbjct: 129 SWQ-DIKDHFRQAGDVIYANVERDGTGVVEFARYEHAKRAVRDLDDSKF 176
>gi|15080592|gb|AAH12039.1| Splicing factor, arginine/serine-rich 6 [Mus musculus]
Length = 339
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|158255842|dbj|BAF83892.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|167515992|ref|XP_001742337.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778961|gb|EDQ92575.1| predicted protein [Monosiga brevicollis MX1]
Length = 164
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
SR ++VGN + R+ EL+ LF KYGRI + +K +AFV FED+RDA DA+ G D I F
Sbjct: 5 SRRVYVGNLPRDIRERELDELFYKYGRILDIHIKGPYAFVTFEDERDAEDAVHGRDGINF 64
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF-EPYGN 120
R R+ + GR + + + ++ +I P +D+K F + +
Sbjct: 65 AGGRLRVELS----NPGRRGANPRDNFSGKHSEFRVLIKGLPRTASWQDVKDFFKDERLD 120
Query: 121 VLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISV 160
V+ + R+ +F QE+ AL+ + KL ++ +
Sbjct: 121 VVFTDVNRDGVGMAEFGNQEDMNFALDKMNGRKLNSHLVRI 161
>gi|410215040|gb|JAA04739.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410302392|gb|JAA29796.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
gi|410360346|gb|JAA44682.1| serine/arginine-rich splicing factor 6 [Pan troglodytes]
Length = 344
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|116175261|ref|NP_001070685.1| serine/arginine-rich splicing factor 6 [Sus scrofa]
gi|115371751|gb|ABI96200.1| SFRS6 [Sus scrofa]
Length = 345
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|20127499|ref|NP_006266.2| serine/arginine-rich splicing factor 6 [Homo sapiens]
gi|307078161|ref|NP_001182497.1| splicing factor, arginine/serine-rich 6 [Pongo abelii]
gi|332209067|ref|XP_003253632.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Nomascus leucogenys]
gi|397511164|ref|XP_003825949.1| PREDICTED: serine/arginine-rich splicing factor 6 [Pan paniscus]
gi|426391709|ref|XP_004062210.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Gorilla gorilla gorilla]
gi|20981728|sp|Q13247.2|SRSF6_HUMAN RecName: Full=Serine/arginine-rich splicing factor 6; AltName:
Full=Pre-mRNA-splicing factor SRP55; AltName:
Full=Splicing factor, arginine/serine-rich 6
gi|13905094|gb|AAH06832.1| Splicing factor, arginine/serine-rich 6 [Homo sapiens]
gi|119596370|gb|EAW75964.1| splicing factor, arginine/serine-rich 6, isoform CRA_a [Homo
sapiens]
gi|119596373|gb|EAW75967.1| splicing factor, arginine/serine-rich 6, isoform CRA_a [Homo
sapiens]
Length = 344
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|359322750|ref|XP_003639908.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1 [Canis
lupus familiaris]
Length = 344
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|395833916|ref|XP_003789963.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 1
[Otolemur garnettii]
gi|395833918|ref|XP_003789964.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2
[Otolemur garnettii]
Length = 221
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G +G G ++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRTYGGQGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|270014159|gb|EFA10607.1| hypothetical protein TcasGA2_TC012868 [Tribolium castaneum]
Length = 424
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y T + +LER F YGR+ V +K+G+ FV F+D RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGTTERDLERFFRGYGRMRDVLIKNGYGFVEFDDHRDADDAVYELNGKKLLGE 65
Query: 65 RRRLSVEWARGE-RGRHRDGSKS--MANQR---PTKT---LFVINFDPIRTRERDIKRHF 115
R++VE ARG RGR + S+S +++R PT+T L V N R +D+K +
Sbjct: 66 --RVTVERARGTPRGRDQWSSRSDHRSHERYGPPTRTNYRLIVENLSS-RISWQDLKDYM 122
Query: 116 EPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKL 153
G V + + RN V+F + + A+E D ++L
Sbjct: 123 RQAGEVTYADAHKQHRNEGVVEFASYSDLKNAIEKLDDTEL 163
>gi|402882500|ref|XP_003904778.1| PREDICTED: serine/arginine-rich splicing factor 6 [Papio anubis]
gi|380815566|gb|AFE79657.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|380815568|gb|AFE79658.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420733|gb|AFH33580.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|383420735|gb|AFH33581.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948770|gb|AFI37990.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
gi|384948772|gb|AFI37991.1| serine/arginine-rich splicing factor 6 [Macaca mulatta]
Length = 343
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|71895047|ref|NP_001026014.1| splicing factor, arginine/serine-rich 6 [Gallus gallus]
gi|53133810|emb|CAG32234.1| hypothetical protein RCJMB04_20j14 [Gallus gallus]
Length = 348
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 28/178 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVKFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR------------------PTKT---LFVINFDP 103
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYSSRSGGGGGYSSRRQSGRDKYGPPVRTEHRLIVENLSS 120
Query: 104 IRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 -RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRKI 177
>gi|326495240|dbj|BAJ85716.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504388|dbj|BAJ91026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510429|dbj|BAJ87431.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523109|dbj|BAJ88595.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ +E LF KYGRI +D+K G+AFV FED RDA DA G
Sbjct: 5 WSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGNRLRVEPAHGGRG 85
>gi|431894401|gb|ELK04201.1| Splicing factor, arginine/serine-rich 6 [Pteropus alecto]
Length = 343
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|47210651|emb|CAF94319.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 17/148 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN E Q E++ LF++YG + + +AFV+ +D + A AI+ L
Sbjct: 4 IFVGNLPREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKNLH--LHKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE + G+ N K L V N + + + +++ FE YG+V
Sbjct: 62 GTAINVEASHGK------------NPGAVK-LHVANVE--KGADDELRALFEEYGSVTEC 106
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
+ +NFAFV +EA A++ D ++
Sbjct: 107 AVVKNFAFVHMSNSDEAMDAIKGLDNTE 134
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 18 ELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
EL LF +YG + + FAFV+ + +A DAI+GLDN F
Sbjct: 92 ELRALFEEYGSVTECAVVKNFAFVHMSNSDEAMDAIKGLDNTEF 135
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+FV N P + +IK F YG V I +N+AFV + ++ ATKA+++ KL
Sbjct: 4 IFVGNL-PREANQEEIKALFTEYGTVTECAIIKNYAFVHMDDRKAATKAIKNLHLHKLHG 62
Query: 156 RVISVE 161
I+VE
Sbjct: 63 TAINVE 68
>gi|30584231|gb|AAP36364.1| Homo sapiens splicing factor, arginine/serine-rich 6 [synthetic
construct]
gi|61371415|gb|AAX43663.1| splicing factor arginine/serine-rich 6 [synthetic construct]
gi|61371422|gb|AAX43664.1| splicing factor arginine/serine-rich 6 [synthetic construct]
Length = 345
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN + T Q E+ LF +YG + + +AFV+ +A A+ L+
Sbjct: 10 IFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLN------- 62
Query: 65 RRRLSVEWARGERGRHRDGSK---SMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYG 119
GR +G K ++ RP T +FV N +I++ FE +G
Sbjct: 63 -------------GRELNGKKMLVELSKPRPQNTWKIFVGNVSS-SCEVSEIRKMFEEHG 108
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
V+ I +++AFV + E+ A+E+ + ++ + I+VE + K
Sbjct: 109 RVVECDIVKDYAFVHMTRESESRAAIEALNGKEVKGKRINVEMSHK 154
>gi|346972032|gb|EGY15484.1| nucleolysin TIA-1 [Verticillium dahliae VdLs.17]
Length = 489
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 113/290 (38%), Gaps = 53/290 (18%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKSG----FAFVYFEDDRDAADAIRGL 56
IFVG+ E L + F+ +G + DMK+G + FV F D DA A+ +
Sbjct: 188 IFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 247
Query: 57 DNIPFGYDRRRLSVEWA--RGER-------------------GRHRDGSKSMAN------ 89
D G R + WA +G+ G H+ + MA+
Sbjct: 248 DGEWLG--SRAIRCNWANQKGQPSIAQQQAMQAMGMTPTTPFGHHQFPAHGMASYEVILA 305
Query: 90 QRPT--KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKAL 145
Q P T++V N P T D+ F+ +G V+ R + R FAF++ E+ E A A+
Sbjct: 306 QTPNWQTTVYVGNLTPYTT-PNDVVPLFQNFGFVVESRFQADRGFAFIKMESHEAAAMAI 364
Query: 146 ESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPS---P 202
+ + R + + +D ++G +SP + AY P+ P
Sbjct: 365 CQMNGYNVNGRPLKCSWGKDKTPNAAGGFDPAQQG----YSPQSATAPGAYPGTPTAYFP 420
Query: 203 DYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSP 252
YG S Y GP +SP G P+ + + YGR + P
Sbjct: 421 QYGAQYSGQPGNYGGPA---AQSPA-GYGAQPMAYGGPQSAGGYGRGQQP 466
>gi|296488280|tpg|DAA30393.1| TPA: RNA binding motif protein 28 isoform 1 [Bos taurus]
Length = 751
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 54/242 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ +++V A+ + R + ++ K+ ++ P K L +I
Sbjct: 66 TT----FEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F +G +L V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 215
R ++V++A+ D+Y S + P +RP P++ D+
Sbjct: 182 RTVAVDWAVA-----KDKYKSTQSASI-----------PGEEKRPEPEHQE-----LDQE 220
Query: 216 NG 217
NG
Sbjct: 221 NG 222
>gi|47087341|ref|NP_998631.1| serine/arginine-rich splicing factor 6a [Danio rerio]
gi|32822789|gb|AAH55238.1| Splicing factor, arginine/serine-rich 6a [Danio rerio]
Length = 347
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 21/160 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ VD+K+G+ FV FED RDA DA+ L+
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNG------ 57
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT---LFVINFDPIRTRERDIKRHFEPYGNV 121
+ L +R GR + G P +T L V N R +D+K G V
Sbjct: 58 -KELCGYSSRSRTGRDKYGP-------PVRTEYRLIVENLSS-RCSWQDLKDFMRQAGEV 108
Query: 122 LHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ + R N ++F + + +ALE D + + R I
Sbjct: 109 TYADAHKERANEGVIEFRSYSDMRRALEKLDGTDINGRKI 148
>gi|410911522|ref|XP_003969239.1| PREDICTED: uncharacterized protein LOC101080136 isoform 1 [Takifugu
rubripes]
Length = 374
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 31/178 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R++++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGER--------------GRHRDGSKSMANQRPTKT---LFVINFDP 103
+ R+ VE +G R GR R G P +T L V N
Sbjct: 60 LCGE--RVIVEHTKGPRRDGGYSGRSGYGRWGRDRYGP-------PIRTDYRLIVENLSS 110
Query: 104 IRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + R+N ++F + +ALE D +++ R I
Sbjct: 111 -RCSWQDLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 167
>gi|62087532|dbj|BAD92213.1| arginine/serine-rich splicing factor 6 variant [Homo sapiens]
Length = 279
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 38 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 97
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 98 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 153
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 154 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 210
>gi|296481070|tpg|DAA23185.1| TPA: splicing factor, arginine/serine-rich 6 [Bos taurus]
Length = 345
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|384950066|gb|AFI38638.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 221
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKTRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|428673079|gb|EKX73992.1| pre-mRNA splicing factor, putative [Babesia equi]
Length = 325
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 17/180 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
+FVGN + ++ +F KYG I +D+K G +AF+ FE R A DA+ D
Sbjct: 15 VFVGNLPEKVDDRDIHEIFDKYGEIRDIDIKHGKTSNYTSYAFIEFESVRSAEDAVECRD 74
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-----PTKTLF--VINFDPIRTRERD 110
F DR RL VE+A GE+ R S ++ PT+T + VI+ P R +
Sbjct: 75 GYEF--DRYRLRVEFA-GEKKSRRHPRSSYEDRGSRYPPPTRTDYRLVISNLPHGCRWQH 131
Query: 111 IKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+K H G V +V I+ +V F + + AL D ++L S +K D R
Sbjct: 132 LKDHMRKAGPVGYVNIQHGRGYVDFMHKSDMKYALRKLDGTELSTSEDSARIRIKKDDYR 191
>gi|307078155|ref|NP_001182495.1| splicing factor, arginine/serine-rich 9 [Sus scrofa]
Length = 221
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|348585449|ref|XP_003478484.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Cavia
porcellus]
gi|351702214|gb|EHB05133.1| Splicing factor, arginine/serine-rich 9 [Heterocephalus glaber]
Length = 221
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+G + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRTGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|417397369|gb|JAA45718.1| Putative splicing factor arginine/serine-rich 9-like protein
[Desmodus rotundus]
gi|431914272|gb|ELK15530.1| Splicing factor, arginine/serine-rich 9 [Pteropus alecto]
Length = 221
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+G + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>gi|3193304|gb|AAC19288.1| T14P8.21 [Arabidopsis thaliana]
gi|7269003|emb|CAB80736.1| AT4g02430 [Arabidopsis thaliana]
Length = 294
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LFSKYG + ++D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D L VE A G R
Sbjct: 66 DG--YDFDGHHLRVELAHGGR 84
>gi|25150290|ref|NP_499649.2| Protein RSP-3 [Caenorhabditis elegans]
gi|56749665|sp|Q9NEW6.2|RSP3_CAEEL RecName: Full=Probable splicing factor, arginine/serine-rich 3;
AltName: Full=CeSF2; AltName: Full=CeSF2/ASF
gi|21615505|emb|CAC35847.2| Protein RSP-3 [Caenorhabditis elegans]
Length = 258
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDN 58
+ ++VGN + R+ E+E +F KYGRI+ VD+KSG FAFV FED RDA DA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 59 IPFGYDRRRLSVEWA 73
F D RR+ VE+
Sbjct: 69 YEF--DGRRIRVEFT 81
>gi|30679138|ref|NP_849537.1| splicing factor SR1B [Arabidopsis thaliana]
gi|26451203|dbj|BAC42705.1| unknown protein [Arabidopsis thaliana]
gi|332656771|gb|AEE82171.1| splicing factor SR1B [Arabidopsis thaliana]
Length = 178
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E LFSKYG + ++D+K G+AFV FED RDA DAI G
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D L VE A G R
Sbjct: 66 DG--YDFDGHHLRVELAHGGR 84
>gi|387018162|gb|AFJ51199.1| RNA-binding protein 14-like [Crotalus adamanteus]
Length = 596
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 22/165 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+FVGN E Q+EL LF G + +V +K +AFV+ ++ A AI+ L+
Sbjct: 7 VFVGNVPEEASQAELRDLFEAAVPGEVVKVVLKEQYAFVHLRNEAAAERAIQKLNGHLLH 66
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPYGN 120
Y RR+ +E++R RPT T +FV N T +++ F+ +G
Sbjct: 67 Y--RRVFLEFSR---------------PRPTHTVKIFVGNVSATCT-SGELRVLFQEFGP 108
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
V+ I +++AFV E E+A A+E + ++ + I+VE + K
Sbjct: 109 VIECDIVKDYAFVHMEKDEDARTAIEHLNGREIKGKRINVELSNK 153
>gi|348518702|ref|XP_003446870.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 243
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDVEDVFYKYGIIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN---------QRPTKTLFVINFDPIRTRERD 110
+ YD RL VE+ R RG R G R ++ +++ P +D
Sbjct: 77 -YDYDGYRLRVEFPRSGRGGGRGGGGGALGTPRGRYGPPSRRSEYRVIVSGLPPSGSWQD 135
Query: 111 IKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 LKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAIRKLDNTKF 179
>gi|47212671|emb|CAF94152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1550
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 25/175 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R++++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGER--------------GRHRDGSKSMANQRPTKTLFVINFDPIRT 106
+ R+ VE +G R GR R G + R L V N R
Sbjct: 60 LCGE--RVIVEHTKGPRRDGGYSGRSGYGRWGRDRYGPPIRTDYR----LIVENLSS-RC 112
Query: 107 RERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + +ALE D +++ R I
Sbjct: 113 SWQDLKDYMRQAGEVTYADTHKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 167
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
R RE D++R F+ YG +L V ++ + FV+F+ +A A+ + +L + VE+
Sbjct: 12 RARENDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKELCGERVIVEHT 70
>gi|330914835|ref|XP_003296804.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
gi|311330893|gb|EFQ95099.1| hypothetical protein PTT_06993 [Pyrenophora teres f. teres 0-1]
Length = 326
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIR 54
++ +++GN YE +L+R+FS++G +E V + GF +V F + DA AI
Sbjct: 135 NKMLYIGNLYYEVTADQLKRVFSRFGEVESVKIVYDNRGLSRGFGYVEFGNLADAQAAID 194
Query: 55 GLDNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
LD F + R + V++ + + R + S P+KTLF+ N ++D+
Sbjct: 195 NLDMQVF--EGRNMVVQYHQPKPNSMSRSSAGSFEANTPSKTLFIGNMS-FEMSDKDLND 251
Query: 114 HFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F NV+ VR+ R FA F ATKA E + R + ++Y+
Sbjct: 252 LFRDIRNVMDVRVAIDRRTGQPRGFAHADFIDVASATKAKEVLSEKIIYGRQLRIDYSKS 311
Query: 166 DDSE-RDDRYDSPR 178
SE R R DS +
Sbjct: 312 GTSEQRGKRADSTQ 325
>gi|307103808|gb|EFN52065.1| hypothetical protein CHLNCDRAFT_36976 [Chlorella variabilis]
Length = 302
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
++VGN + R+ E+E LFSKYG++ +DMK+ FAFV F D RDA DA+RG D
Sbjct: 12 VYVGNLPDDIREREVEDLFSKYGKVVSIDMKAPVRPPAFAFVEFADPRDAEDAVRGRD-- 69
Query: 60 PFGYD--RRRLSVEWARGE---RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
GYD RL VE A+G G R T ++ P+ +D+K H
Sbjct: 70 --GYDFYGNRLRVELAKGAGGRGRGFGGGPPPGFRPRQTGFRVLVKGLPMSASWQDLKDH 127
Query: 115 FEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+ + R+ V+FET ++ + + D ++
Sbjct: 128 VRQVCKPAYTNVFRDRDGVTGVVEFETADDMERTIRKLDDTEF 170
>gi|156394189|ref|XP_001636709.1| predicted protein [Nematostella vectensis]
gi|156223814|gb|EDO44646.1| predicted protein [Nematostella vectensis]
Length = 223
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 24/159 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++VGN + R+ +L +F KYG I VD+K+ FAFV FED RDA DA++G D
Sbjct: 11 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDG 70
Query: 59 IPFGYDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
F D R+ VE+ RG G R D ++ PT + +D+K H
Sbjct: 71 HEF--DGYRIRVEFPRGGSGPPPRRSDFRVQVSGLPPTGSW------------QDLKDHM 116
Query: 116 EPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+VL + ++ V+F ++ A+ + D SK
Sbjct: 117 REAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKF 155
>gi|156095500|ref|XP_001613785.1| splicing factor, arginine/serine-rich 1 [Plasmodium vivax Sal-1]
gi|148802659|gb|EDL44058.1| splicing factor, arginine/serine-rich 1, putative [Plasmodium
vivax]
Length = 314
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F KYG I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVTPRDVENEFRKYGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-----LFVINFDPIRTRERDIKRH 114
FG ++ R+ V + + G++ R K+ + ++ P+ +D+K H
Sbjct: 70 DFGGNKLRVEVPFNARDNGKYSSRGGRGMMGRGMKSRRGRYVVEVSGLPLSGSWQDLKDH 129
Query: 115 FEPYGNVLHVRIRRN-FAFVQFETQEEATKALE----STDRSKLVDRVISVEYALKDDSE 169
G H + +N V F +E+ +A+E ST RS ++ K
Sbjct: 130 LREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFNGSTFRSHEGEKSKITIRQKKTSWH 189
Query: 170 RDDRYDSPRRGGYGRH 185
R+D GGYGR+
Sbjct: 190 RED-------GGYGRY 198
>gi|339522327|gb|AEJ84328.1| RNA-binding protein 4 [Capra hircus]
Length = 143
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ FV+ ED A DAIR L +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNHGFVHREDKPAAEDAIRNLHHYKL--- 60
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
G + + S + + L V N P T ++++ FE YG V+
Sbjct: 61 ------------HGVNINVGASTNKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKL 153
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
+F+ NF E + +LE+LF+K+G+I + S GF FV FE+ DA A+ +
Sbjct: 202 VFIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMH 261
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
R+L V A+ + R + + Q+ + L+V N D E
Sbjct: 262 EYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVDDEV- 320
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++++FE YG + ++ + F FV FE +EATKA+ + + + + V A
Sbjct: 321 LRQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALA 380
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
++VG+ + ++ L FS G + + + G+A+V F+ ADA R L
Sbjct: 21 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQP---ADAERAL 77
Query: 57 DNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + I F
Sbjct: 78 DTMNFDVMYGKPIRIMWSQRDPSMRRSGAGN---------IFIKNLDK-SIDNKAIYDTF 127
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A KA+E + L + + V
Sbjct: 128 SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 179
>gi|198432077|ref|XP_002131581.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 4
(Pre-mRNA-splicing factor SRP75) (SRP001LB) [Ciona
intestinalis]
Length = 332
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 37/190 (19%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R IFVG Y R+ ++ER F +GRI +++K+GF FV F+D RDA DA+ ++N
Sbjct: 4 RRIFVGRLSYRAREGDIERFFKGFGRITDINIKNGFCFVEFDDSRDADDAVYEMNNQMLC 63
Query: 63 YDRRRLSVEWARG-------------------------------ERGRHRDGSKSMANQR 91
+ R++VE A+G +RG R SK R
Sbjct: 64 GE--RVTVELAKGTQRWGQERRDYGGGRDYGRGDYGGGYGGRNNDRGFGRRQSKFAPPMR 121
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALEST 148
+ V N R +++K H G + + + RRN V F + ++ A+E
Sbjct: 122 TEYRVIVENL-STRVAWQELKDHLRQAGEITYADAHKHRRNEGVVDFASYDDMKNAIEKF 180
Query: 149 DRSKLVDRVI 158
+ ++L R I
Sbjct: 181 NNTELNGRKI 190
>gi|156379214|ref|XP_001631353.1| predicted protein [Nematostella vectensis]
gi|156218392|gb|EDO39290.1| predicted protein [Nematostella vectensis]
Length = 200
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 21/178 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR IF+G + R+S++E+ YG+I + +K G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-IFLGRLPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNGRD 59
Query: 61 FGYDRRRLSVEWARGER----GRH-RDGSKSMANQR--------PTKTLFVINFDPI--R 105
+ R+ VE+++G R GR RD S P +T + + + + R
Sbjct: 60 LIGE--RVVVEFSKGRRSEGGGRDRRDFSGRGGRDGGRRPIYGPPVRTNYSVIVENLSSR 117
Query: 106 TRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
T +D+K +F YG V + + R V+FE++++ A+E D ++L R I V
Sbjct: 118 TSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRRIRV 175
>gi|426236979|ref|XP_004023550.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1 [Ovis aries]
Length = 190
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 9/155 (5%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRXGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+ YD RL VE+ R RG R G ++R + V P + + D+K H G
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRRGRYGPPSRRSENRVVVSGLPPSGSWQ-DLKDHMREAG 134
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 169
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
+++ N ET E E L +K+G+ + V ++ GF FV F + DA + L+
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELN 277
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
N F + L V A+ + R ++ K R K LF+ N D ++
Sbjct: 278 NTEF--KGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD-SIDDKK 334
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 164 LKDDSER 170
+ D R
Sbjct: 395 QRKDVRR 401
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADA 52
+S ++VG+ + ++ L +FS G + + G+A+V F D A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
I L+ P + + W++ + + G+ + +F+ N P + +
Sbjct: 93 IEKLNFTPI--KGKLCRIMWSQRDPSLRKKGAGN---------IFIKNLHP-DIDNKALY 140
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L ++ + F +V FE E A++A+++ + L + I V
Sbjct: 141 DTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKSGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + GF +V+FE+D A++AI L+
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALN 184
Query: 58 NIPFGYDRRRLSVEWARGER-GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ + ++ ER + + + N +++ N + T +++ +
Sbjct: 185 GMLLNGQEIYVGPHLSKKERESKFEEMKANFTN------VYIKNIN-TETTDKEFEELVA 237
Query: 117 PYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD--- 166
+G V + R F FV F E+A K +E + ++ + + V A K
Sbjct: 238 KFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYER 297
Query: 167 DSERDDRYDSPR 178
E +Y++ R
Sbjct: 298 QQELKKQYEATR 309
>gi|417399301|gb|JAA46673.1| Putative serine/arginine-rich splicing factor 6 [Desmodus rotundus]
Length = 345
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|357441749|ref|XP_003591152.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480200|gb|AES61403.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 334
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 37 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 96
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG RH S S R + ++ P
Sbjct: 97 DG--YDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 154
Query: 108 ERDIKRHFEPYGNVLHVRIRR 128
+D+K H G+V ++ R
Sbjct: 155 WQDLKDHMRKAGHVCFSQVFR 175
>gi|297816162|ref|XP_002875964.1| hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp.
lyrata]
gi|297321802|gb|EFH52223.1| hypothetical protein ARALYDRAFT_906222 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E LF KYGRI +++K + FV FE RDA DAI+G
Sbjct: 5 FSRSIYVGNLPGDIREHEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR 79
D + +D RL VE A G RG+
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRGQ 86
>gi|432864636|ref|XP_004070385.1| PREDICTED: uncharacterized protein LOC101162527 isoform 1 [Oryzias
latipes]
Length = 367
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ VDMK+G+ FV FED+RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR---------------------PTKT---LFVIN 100
R+ VE ARG R R RDG ++ P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYGGGSSWGGGRSNNSSSSRTRVGRDKYGPPVRTEYRLIVEN 120
Query: 101 FDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRV 157
R +D+K G V + + R N ++F + + +AL+ D + + R
Sbjct: 121 LSS-RCSWQDLKDFMRQAGEVTYADAHKERTNQGVIEFRSYSDMKRALDKLDGTDINGRK 179
Query: 158 I 158
I
Sbjct: 180 I 180
>gi|327282648|ref|XP_003226054.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Anolis
carolinensis]
Length = 245
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN R+ +LE LF KYGRI +++KS FAFV FED RDA DA+ G +
Sbjct: 38 IYVGNLPANVREKDLEELFYKYGRIRDIELKSKRGLVPFAFVRFEDPRDAEDAVYGRNG- 96
Query: 60 PFGYDRRRLSVEWAR----GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ Y + RL VE+ + ++ R ++ +++ P +D+K H
Sbjct: 97 -YDYGQCRLRVEFPKPSRGRGGFGGGPRGRNGPPSRRSEFRVLVSGLPPSGSWQDLKDHM 155
Query: 116 EPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V+F +E+ AL D +K
Sbjct: 156 REAGDVCYADVQKDGMGVVEFLRKEDMEYALRKLDDTKF 194
>gi|4506903|ref|NP_003760.1| serine/arginine-rich splicing factor 9 [Homo sapiens]
gi|114647286|ref|XP_001160785.1| PREDICTED: serine/arginine-rich splicing factor 9 isoform 2 [Pan
troglodytes]
gi|297693182|ref|XP_002823915.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pongo abelii]
gi|332262536|ref|XP_003280317.1| PREDICTED: serine/arginine-rich splicing factor 9 [Nomascus
leucogenys]
gi|402887863|ref|XP_003907300.1| PREDICTED: serine/arginine-rich splicing factor 9 [Papio anubis]
gi|410047369|ref|XP_003952371.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|3929377|sp|Q13242.1|SRSF9_HUMAN RecName: Full=Serine/arginine-rich splicing factor 9; AltName:
Full=Pre-mRNA-splicing factor SRp30C; AltName:
Full=Splicing factor, arginine/serine-rich 9
gi|1049078|gb|AAA93069.1| SRp30c [Homo sapiens]
gi|4099429|gb|AAD00626.1| splicing factor SRp30c [Homo sapiens]
gi|62739648|gb|AAH93973.1| Splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|62740064|gb|AAH93971.1| Splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|119618600|gb|EAW98194.1| splicing factor, arginine/serine-rich 9 [Homo sapiens]
gi|261861074|dbj|BAI47059.1| splicing factor, arginine/serine-rich 9 [synthetic construct]
gi|380817540|gb|AFE80644.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
gi|383422449|gb|AFH34438.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
gi|410227624|gb|JAA11031.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410227626|gb|JAA11032.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410227628|gb|JAA11033.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263740|gb|JAA19836.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263742|gb|JAA19837.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410263744|gb|JAA19838.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305344|gb|JAA31272.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305346|gb|JAA31273.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410305348|gb|JAA31274.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410340983|gb|JAA39438.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
gi|410340985|gb|JAA39439.1| serine/arginine-rich splicing factor 9 [Pan troglodytes]
Length = 221
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|357618884|gb|EHJ71687.1| hypothetical protein KGM_12879 [Danaus plexippus]
Length = 728
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 49/210 (23%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
+ + N ++ + L F+KYG +E V + G AFV+F A AI +
Sbjct: 24 LIIRNISFKATEESLREHFAKYGTVEEVKLLKKADGKLVGCAFVHFTHVPMANKAIAATN 83
Query: 58 NIPFGYDRRRLSVEWA------RGERG------RHRDGSK-----------SMANQRPTK 94
PF R + V WA GE+ R GS + NQ+P++
Sbjct: 84 KKPFLG--RPIYVSWAVPKHQYNGEQNGSPTKKRQTSGSSDDVKVEVKDEDTADNQKPSE 141
Query: 95 ----------TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-------FAFVQFET 137
+I + E +K HFEPYGN+L V++ + AFV F+
Sbjct: 142 DKNKMRVNRNARLIIRNVSFKATEESLKEHFEPYGNILEVKLLKKPDGKLVGCAFVHFKN 201
Query: 138 QEEATKALESTDRSKLVDRVISVEYALKDD 167
A KAL +T+ + R ISV++A+ D
Sbjct: 202 VPMAKKALLNTNMKPFLGRPISVDWAVPKD 231
>gi|78369222|ref|NP_001030349.1| serine/arginine-rich splicing factor 6 [Bos taurus]
gi|122145041|sp|Q3B7L6.1|SRSF6_BOVIN RecName: Full=Serine/arginine-rich splicing factor 6; AltName:
Full=Splicing factor, arginine/serine-rich 6
gi|77567850|gb|AAI07554.1| Splicing factor, arginine/serine-rich 6 [Bos taurus]
Length = 345
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|334327169|ref|XP_003340840.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 9-like [Monodelphis domestica]
Length = 220
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+V N + R+ +LE LF KYGRI +++K + FAFV FED RDA DAI G +
Sbjct: 18 IYVENLPADVREKDLEDLFYKYGRIRDIELKNRRGLAPFAFVRFEDPRDAEDAIYGRNGY 77
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G + RL VE R G G ++R + V P + + D+K H G
Sbjct: 78 DYG--QCRLRVELPRNPGGGGPRGRTGPPSRRSEFRVLVSGLPPSGSWQ-DLKDHMREAG 134
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
V + ++++ V+F +E+ AL D SK
Sbjct: 135 GVCYADVQKDGMGVVEFLRKEDMEYALRRLDDSKF 169
>gi|348510431|ref|XP_003442749.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Oreochromis
niloticus]
Length = 342
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 32/179 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +++R FS YG++ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYVGKLSYHVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGER----------------------GRHRDGSKSMANQRPTKTLFVINFD 102
R+ +E ARG R GR + G R L V N
Sbjct: 64 --RVVIEHARGPRRDGYGYGGHQGDGGGYSSWNRTGRDKYGPPVRTEHR----LIVENLS 117
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F ++ + +ALE D + + R I
Sbjct: 118 S-RCSWQDLKDFMRQAGEVTYADAHKGRANEGVIEFRSRSDMKRALEKLDGTDINGRKI 175
>gi|308490885|ref|XP_003107634.1| CRE-RSP-3 protein [Caenorhabditis remanei]
gi|308250503|gb|EFO94455.1| CRE-RSP-3 protein [Caenorhabditis remanei]
Length = 262
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDN 58
+ ++VGN + R+ E+E +F KYGRI+ +D+KSG FAFV FED RDA DA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYIDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 59 IPFGYDRRRLSVEWA 73
F D RR+ VE+
Sbjct: 69 YEF--DGRRIRVEFT 81
>gi|82540657|ref|XP_724630.1| splicing factor 1 [Plasmodium yoelii yoelii 17XNL]
gi|23479337|gb|EAA16195.1| splicing factor, arginine/serine-rich 1 [Plasmodium yoelii yoelii]
Length = 309
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F K+G I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSM----ANQRPTKTLFVINFDPIRTRERDIKRHF 115
FG ++ R+ V + + G++ + M + R + + ++ P+ +D+K H
Sbjct: 70 DFGGNKLRVEVPFNARDNGKYNSRGRGMMGRGSKSRRGRYVVEVSGLPLSGSWQDLKDHL 129
Query: 116 EPYGNVLHVRIRRN-FAFVQFETQEEATKALE 146
G H + +N V F +E+ +A+E
Sbjct: 130 REAGECGHADVFKNGTGEVSFFHKEDMLEAIE 161
>gi|395829006|ref|XP_003787652.1| PREDICTED: serine/arginine-rich splicing factor 6 [Otolemur
garnettii]
Length = 345
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDRLDGTEINGRNI 176
>gi|340726341|ref|XP_003401518.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
terrestris]
gi|350423930|ref|XP_003493634.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Bombus
impatiens]
Length = 248
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 32/225 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ ++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + ++ V+F E+ A++ D S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 161 EYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
Y +K+D DR S R R + RS SP RRR SP Y
Sbjct: 189 AYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP--RRRGSPTY 228
>gi|52345494|ref|NP_001004795.1| serine/arginine-rich splicing factor 9 [Xenopus (Silurana)
tropicalis]
gi|49257722|gb|AAH74531.1| splicing factor, arginine/serine-rich 9 [Xenopus (Silurana)
tropicalis]
gi|89272901|emb|CAJ83204.1| splicing factor, arginine/serine-rich 9 [Xenopus (Silurana)
tropicalis]
Length = 225
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
I+VGN + R+ ELE LF +YGRI +++K + FAF+ F+D RDA DA+ +
Sbjct: 18 IYVGNLPADIREKELEDLFDRYGRIRTIELKNRGGSSAAPFAFISFQDPRDAEDAVFARN 77
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRP----TKTLFVINFDPIRTRERDIKR 113
FG RL VE+ R RG S P ++ +++ P +D+K
Sbjct: 78 GYEFG--SCRLRVEFPRSFRGSGGGYGGSRGRNGPPSRRSEYRVIVSGLPPSGSWQDLKD 135
Query: 114 HFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
H G+V + + ++ V+F +E+ AL D +K
Sbjct: 136 HMREAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKF 176
>gi|389584162|dbj|GAB66895.1| splicing factor arginine/serine-rich 1 [Plasmodium cynomolgi strain
B]
Length = 316
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 34/202 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F KYG I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVTPRDVENEFRKYGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-----LFVINFDPIRTRERDIKRH 114
FG ++ R+ V + + G++ R K+ + ++ P+ +D+K H
Sbjct: 70 DFGGNKLRVEVPFNARDNGKYNSRGGRGMMGRGMKSRRGRYVVEVSGLPLSGSWQDLKDH 129
Query: 115 FEPYGNVLHVRIRRN-FAFVQFETQEEATKALE----------STDRSKLVDRVISVEYA 163
G H + +N V F +E+ +A+E ++SK+ R V +
Sbjct: 130 LREAGECGHADVFKNGLGEVSFFHKEDMLEAIEKFNGSTFRSHEGEKSKITIREKKVSWH 189
Query: 164 LKDDSERDDRYDSPRRGGYGRH 185
+D GGYGR+
Sbjct: 190 RED-------------GGYGRY 198
>gi|348563835|ref|XP_003467712.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 6-like [Cavia porcellus]
Length = 341
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKL 153
R +D+K G V + + R N ++F + + +AL+ D +++
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
>gi|399219025|emb|CCF75912.1| unnamed protein product [Babesia microti strain RI]
Length = 227
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 22/160 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
++VGN E Q E+E F K+G+I+R D+K G FAFV FED RDA DAI+ D
Sbjct: 10 VYVGNLPSECDQREIEEEFEKFGKIKRCDVKRGANGSSFAFVEFEDPRDAKDAIKEKDGY 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-----TLFVINFDPIRTRERDIKRH 114
F R R+ V ++ +RG R +RPT T+ V+ P + + D+K H
Sbjct: 70 EFKGSRLRVEVPFS--DRGYSR--------RRPTPRRGHYTVEVLGLPPSGSWQ-DLKDH 118
Query: 115 FEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKL 153
G H + R V F ++ + A+E D S
Sbjct: 119 MRDAGECGHADVFRGGVGEVSFFSRRDMDAAIEMFDGSTF 158
>gi|383848005|ref|XP_003699643.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Megachile
rotundata]
Length = 248
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 32/225 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ ++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + ++ V+F E+ A++ D S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 161 EYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
Y +K+D DR S R R + RS SP RRR SP Y
Sbjct: 189 AYIRVKEDHSSGDRGRSEDR---ERGRSHSRSYSP--RRRGSPTY 228
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
+FV NF+ E+ + EL LF YG I + ++ GF FV F + DA A+ L+
Sbjct: 235 VFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALN 294
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ Y + L V A+ + R + +K R K LF+ N D R
Sbjct: 295 DKE--YKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDAR- 351
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ R F FV T EEATKA+ ++ + ++ + V A
Sbjct: 352 LEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALA 411
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
++VG + +S+L FS G + + + G+ +V F A+ L
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ R RL W++ + R GS + +F+ N DP + + F
Sbjct: 114 NYAEIKGVRCRLM--WSQRDPSLRRSGSGN---------IFIKNLDP-AIENKTLHDTFS 161
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+G VL ++ + F FV +E+ E A A+E+ + L R I V
Sbjct: 162 SFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV 212
>gi|225718298|gb|ACO14995.1| Splicing factor, arginine/serine-rich 4 [Caligus clemensi]
Length = 234
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 26/179 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++GN ETR+ ++E+ F YG++ + +K+G+ FV FED RDA DA++ LD
Sbjct: 8 LYLGNVSDETRERDVEKFFKGYGKLREIALKNGYGFVEFEDHRDADDAVQDLDGKDMNGS 67
Query: 65 RRRLSVEWARGERGRHRDGSK-----------SMANQRPTK-------TLFVINFDPIRT 106
R R VE+AR R + R GS+ P K T + I + + +
Sbjct: 68 RVR--VEFARSPRDK-RGGSRYPSTSSRRSPPRGRRGAPIKRNPPGRRTQYRIRVENLSS 124
Query: 107 RE--RDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
R +D+K +F G++ + R N V+F + AL+ D ++L R I +
Sbjct: 125 RASWQDLKDYFRSCGDITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTELAGRRIRL 183
>gi|357441755|ref|XP_003591155.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480203|gb|AES61406.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 316
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 37 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 96
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG RH S S R + ++ P
Sbjct: 97 DG--YDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 154
Query: 108 ERDIKRHFEPYGNVLHVRIRR 128
+D+K H G+V ++ R
Sbjct: 155 WQDLKDHMRKAGHVCFSQVFR 175
>gi|357441753|ref|XP_003591154.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355480202|gb|AES61405.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 322
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI
Sbjct: 37 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYR 96
Query: 57 DNIPFGYDRRRLSVEWARGERG---------RHRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G RG RH S S R + ++ P
Sbjct: 97 DG--YDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPPSAS 154
Query: 108 ERDIKRHFEPYGNVLHVRIRR 128
+D+K H G+V ++ R
Sbjct: 155 WQDLKDHMRKAGHVCFSQVFR 175
>gi|301104435|ref|XP_002901302.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
gi|262100777|gb|EEY58829.1| splicing factor, arginine/serine-rich, putative [Phytophthora
infestans T30-4]
Length = 214
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
+FVGN + R+ EL F +YGRI V +K FAF+ +E+++DA+DA+R ++N
Sbjct: 4 VFVGNLPEDVRERELSDKFERYGRITSVRIKFPARPPPFAFLTYENEQDASDAVRSMNNT 63
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFD--PIRTRERDIKRHFEP 117
FG R R VE +RG + + RP T + + P +D+K
Sbjct: 64 TFGGSRIR--VEMSRG-----------IDDARPRGTQYRVKISGLPDTMSWQDLKDFLRK 110
Query: 118 YGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKL 153
G+V+H + RR F T +E +A+ D + L
Sbjct: 111 GGDVVHSDVDRRGNGSASFATPDEMLRAIRKLDGTDL 147
>gi|407041791|gb|EKE40955.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 379
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N + T + +++LF KYG I++V + G AF+ F D RDA A L+
Sbjct: 25 SRILFVRNICFNTNEESIKKLFEKYGEIKKVFCQIENRGIAFITFYDIRDAIKAHEELNK 84
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVI--NFDPIRTRERDIKRHFE 116
G ++ + D ++ AN L+VI F I T + +I +FE
Sbjct: 85 KEIGGRPIKIHYSLPKDNEINKIDSLENHAN------LYVILRGFQKIPTND-EIFHYFE 137
Query: 117 PYGNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA--LKDDSER 170
+G V VR + F+++ A KALES++ + + I V+YA K D ER
Sbjct: 138 KFGEVSEVRDSADKITIKFIEYYDSRAAVKALESSNNAHWNEGTIEVKYASFSKKDLER 196
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI----------ERVDMKSGFAFVYFEDDRDAAD 51
S+ +++ N ++T++ + ++F K GR+ ++V+ SGF FV + DA +
Sbjct: 515 SKTLYIKNLSFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYARHEDAIN 574
Query: 52 AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
AI+ L ++ + + + H++ K + + + L V N P T +++
Sbjct: 575 AIKTLQGKVIDGHAVQIEISQPKVKDEDHKE-RKEIEEHKVSNKLLVKNV-PFETNIKEV 632
Query: 112 KRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ F YG + VR+ + FAFV++ T++EA A+ + S R + +EYA
Sbjct: 633 RELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAMAALKNSHFYGRHLIIEYA- 691
Query: 165 KDDSERD 171
D+E D
Sbjct: 692 -KDTELD 697
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRI------ERVD-MKSGFAFVYFEDDRDAADAI 53
+S + V N +ET E+ LF YG + ++VD GFAFV + ++AA+A+
Sbjct: 614 VSNKLLVKNVPFETNIKEVRELFRTYGTLRGVRLPKKVDGQNKGFAFVEYATKQEAANAM 673
Query: 54 RGLDNIPFGYDRRRLSVEWAR 74
L N F Y R L +E+A+
Sbjct: 674 AALKNSHF-YG-RHLIIEYAK 692
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147
+++ N P E DI++ F+ +GN+ + + + F FV F ++A KA
Sbjct: 188 IYITNL-PFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNE 246
Query: 148 TDRSKLVDRVISVEYALKDDSERDDRYDSPRRG 180
D + R++ V YA + D Y S + G
Sbjct: 247 MDNKFIKGRIVHVTYA------KADPYSSQQTG 273
>gi|116192351|ref|XP_001221988.1| hypothetical protein CHGG_05893 [Chaetomium globosum CBS 148.51]
gi|88181806|gb|EAQ89274.1| hypothetical protein CHGG_05893 [Chaetomium globosum CBS 148.51]
Length = 361
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 6 FVGNFEYETRQSELERLFSKYGRIERV-------DMKSGFAFVYFEDDRDAADAIRGLDN 58
F+ N +E + L + F KYG++ M GF FV FE + A + N
Sbjct: 140 FIRNLVFELTEEHLVKAFEKYGKVSGAFVARDPRGMSKGFGFVSFETAEELQLACEAV-N 198
Query: 59 IPFGYDRRRLSV--EWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
F + RR + R R RHR+ + PT LF+ N P T + ++ R F+
Sbjct: 199 GSFWHGRRITCIPRTEQREGRSRHRN-----SPSEPTAQLFIGNI-PYETTDAELNRIFQ 252
Query: 117 PYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
GNV VR+ R FA F + E A A + + +KL DR++ +++A
Sbjct: 253 GMGNVKDVRVAVDRTTGWPRGFAHADFPSVEAAIDAKQRLEGAKLNDRLLRIDFA 307
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+F+GN YET +EL R+F G ++ V + GFA F A DA + L
Sbjct: 233 LFIGNIPYETTDAELNRIFQGMGNVKDVRVAVDRTTGWPRGFAHADFPSVEAAIDAKQRL 292
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSK 85
+ + R L +++A+G R R +DG++
Sbjct: 293 EGAKL--NDRLLRIDFAQGYR-RGQDGAE 318
>gi|440907745|gb|ELR57852.1| RNA-binding protein 28 [Bos grunniens mutus]
Length = 751
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 54/242 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ +++V A+ + R + ++ K+ ++ P K L +I
Sbjct: 66 TT----FEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F +G +L V I R FAFVQF+ EA KAL + ++
Sbjct: 122 SFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALRGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRY 215
R ++V++A+ D+Y S + P +RP P++ D+
Sbjct: 182 RTVAVDWAVA-----KDKYKSTQSASV-----------PGEEKRPEPEHQE-----LDQE 220
Query: 216 NG 217
NG
Sbjct: 221 NG 222
>gi|126291113|ref|XP_001371339.1| PREDICTED: serine/arginine-rich splicing factor 6-like [Monodelphis
domestica]
Length = 340
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRGGGGGYSSRRATGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYG----RIERV-----DMKSGFAFVYFEDDRDAADAIRG 55
+F+GN Y ++E ++ + G ++ V D G+ F+ + + A A +
Sbjct: 174 LFIGNIPYNWTENEFKKAAEEVGPGVLKVNLVKAPHSDTNKGYGFIEYYNQACAEYAKKM 233
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ F D+ +V WA + G A+ K+L+V N T+E+ +K+ F
Sbjct: 234 MSTPEFKLDKNAPNVSWADTKNGGES------ASTAQVKSLYVKNLPKAVTQEQ-LKKLF 286
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
E G V V I + FV F+ + A KALE T+R +L +++ A K +
Sbjct: 287 EHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALEDTERFELDGQLLDCSLA-KPLA 345
Query: 169 ERDDRYDSPRRG---------GY---GRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 212
++ D +P+ G GY G ++P G + A P YG G + AY
Sbjct: 346 DKKDDTSAPKGGPLLPSYTPVGYGLMGAYNPLGNGLAVAGAYNP---YGNGLAGAY 398
>gi|326495758|dbj|BAJ85975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 21/170 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
S I+VGN + R+ E+E LF KYGRI +D+K G+AFV FED RDA DAI G
Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTR 107
D + +D RL VE A G + + G + ++R + V P
Sbjct: 66 DG--YDFDGYRLRVELAHGGKAQSYSYDRPSSFSSGRRGGVSRRSEYRVMVDGL-PSSAS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + R V + ++ A+ D ++
Sbjct: 123 WQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTNYDDMKYAIRKLDGTEF 172
>gi|268531628|ref|XP_002630941.1| C. briggsae CBR-RSP-5 protein [Caenorhabditis briggsae]
Length = 213
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
I++G Y R+ ++ER YGRI + MK GFAFV FED RDA DA LD
Sbjct: 4 IYLGKIPYHARERDIERFLKGYGRITNISMKYGFAFVDFEDYRDAEDACHDLDGKTMDGS 63
Query: 65 RRRLSVEWARGE 76
R+ VE A+G+
Sbjct: 64 SMRVVVEMAKGK 75
>gi|66548276|ref|XP_393525.2| PREDICTED: serine/arginine-rich splicing factor 1-like [Apis
mellifera]
Length = 248
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ ++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + + V+F E+ A++ D S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEV 188
Query: 161 EYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
Y +K+D DR S R R + RS SP RRR SP Y
Sbjct: 189 AYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP--RRRGSPTY 228
>gi|341892188|gb|EGT48123.1| CBN-RSP-5 protein [Caenorhabditis brenneri]
gi|341901487|gb|EGT57422.1| hypothetical protein CAEBREN_20510 [Caenorhabditis brenneri]
Length = 204
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YGRI + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDIERFLKGYGRITNISMKYGFAFVDFEDSRDAEDACHDLDGRTMDGS 63
Query: 65 RRRLSVEWARG 75
R+ V+ ARG
Sbjct: 64 SMRVVVQMARG 74
>gi|395505264|ref|XP_003756963.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1
[Sarcophilus harrisii]
Length = 340
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRGGGGGYSSRRATGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|357631525|gb|EHJ78995.1| hypothetical protein KGM_15683 [Danaus plexippus]
Length = 249
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA+R D
Sbjct: 14 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDPRDADDAVRARDG-- 71
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
+ YD RL VE+ ++ +R R ++ +R + V P + +
Sbjct: 72 YDYDGYRLRVEFPRGGGGGARGGRSQPDRFGPRPAARGPPARRSEYRVLVTGLPPSGSWQ 131
Query: 109 RDIKRHFEPYGNVLHV-RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA-LKD 166
D+K H G+V + V+F E+ A++ D S+ V Y +K+
Sbjct: 132 -DLKDHMREAGDVCFADTFKDGTGVVEFLRHEDMKYAVKKLDDSRFRSHEGEVSYIRVKE 190
Query: 167 DSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
D Y S GG SP ++ SP+Y RR SP Y
Sbjct: 191 D------YGSGGGGGLRDRSPEYQAGSPSYTRRGSPSY 222
>gi|367020688|ref|XP_003659629.1| hypothetical protein MYCTH_2296912 [Myceliophthora thermophila ATCC
42464]
gi|347006896|gb|AEO54384.1| hypothetical protein MYCTH_2296912 [Myceliophthora thermophila ATCC
42464]
Length = 327
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 6 FVGNFEYETRQSELERLFSKYGRIERV-------DMKSGFAFVYFE---DDRDAADAIRG 55
FV N +E + L + FSKYG + +V M G+ FV FE + + A D + G
Sbjct: 133 FVRNIVFELSEEHLTKAFSKYGNVTKVYIARDPRGMSKGYGFVSFETPEELKAACDNVNG 192
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
F + RR + R GR + + PT+ LFV N P T + ++ R F
Sbjct: 193 ----SFWHGRRITCI--PRATEGRQKQTKHRNSPDHPTQQLFVGNI-PYETTDAELNRLF 245
Query: 116 EPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
N+ VR+ R FA F T E A +A + + +KL +RV+ +++A
Sbjct: 246 RGMDNLEDVRVAVDRTTGWPRGFAHADFTTVEAAIEAKKKLEGAKLGNRVLRIDFA 301
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAI 53
++ +FVGN YET +EL RLF +E V + GFA F A +A
Sbjct: 224 TQQLFVGNIPYETTDAELNRLFRGMDNLEDVRVAVDRTTGWPRGFAHADFTTVEAAIEAK 283
Query: 54 RGLDNIPFGYDRRRLSVEWARG 75
+ L+ G R L +++A G
Sbjct: 284 KKLEGAKLG--NRVLRIDFAEG 303
>gi|380024306|ref|XP_003695942.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 1-like [Apis florea]
Length = 248
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 32/225 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ ++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + + V+F E+ A++ D S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKXDDSRFRSHEGEV 188
Query: 161 EYA-LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
Y +K+D DR S R R + RS SP RRR SP Y
Sbjct: 189 AYIRVKEDHNSGDRGRSEDR---ERGRSHSRSYSP--RRRGSPTY 228
>gi|71033489|ref|XP_766386.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353343|gb|EAN34103.1| hypothetical protein TP01_0865 [Theileria parva]
Length = 343
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
+FVGN + +++ LF K+G I+ +D+K G +AF+ F R A DA+ D
Sbjct: 15 VFVGNLPDRVDERDIQDLFDKFGEIKDIDIKHGKTSNYTSYAFIEFASVRSAEDAVDSRD 74
Query: 58 NIPFGYDRRRLSVEWARGERGRH-------RDGSKSMANQRPTKTLF--VINFDPIRTRE 108
+ YDR RL VE+A +R R RD +S PT+T + VI+ P R
Sbjct: 75 G--YEYDRYRLRVEFAGEKRPRRYPSYERPRDRDRSNRYPPPTRTDYRLVISNLPHGCRW 132
Query: 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
+ +K H G V +V I FV F + + A+ D S+L
Sbjct: 133 QHLKDHMRKAGPVGYVNIVHGKGFVDFLHKSDMKYAIRKLDGSEL 177
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE++F+K+G I ++ + GF FV F + +A A++ L +
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD- 110
+L V A+ + RH + K + + L+V N D T + D
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD--ETVDDDG 332
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLV 154
+K+ FE YGN+ ++ + F FV FE EEAT A+ + SK+V
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMN-SKMV 382
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD--------MKSGFAFVYFEDDRDAADAIRGL 56
++VG+ + +S L FS G + + + G+A+V F+ ADA R +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ---PADAERAM 90
Query: 57 DNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + + I F
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRRSGAGN---------IFIKNLDKV-IDNKSIYDTF 140
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A A++ + L + + V
Sbjct: 141 SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|440893251|gb|ELR46093.1| Serine/arginine-rich splicing factor 6 [Bos grunniens mutus]
Length = 348
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------------PTKTLFVINFDPIR 105
R+ VE ARG R D ++ + P +T F + + +
Sbjct: 64 --RVIVEHARGPRRDRGDWVVVSSHDKGGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 121
Query: 106 TRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 122 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 179
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER------VDMKS-GFAFVYFEDDRDAADAIRGLD 57
+++ NF E + LE+LFSK+G+I D KS GF FV FE+ DA A+ +
Sbjct: 201 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
R+L V A+ + R + + Q+ + L+V N D T D
Sbjct: 261 EYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDD--TVNDD 318
Query: 111 I-KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
I K++FE YG + ++ + F FV FE +EATKA+ + + + + V
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 378
Query: 163 A 163
A
Sbjct: 379 A 379
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
++VG+ + ++ L FS G + + + G+A+V F+ ADA R L
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQP---ADAERAL 76
Query: 57 DNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + I F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRRSGAGN---------IFIKNLDK-SIDNKAIYDTF 126
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A KA+E + L + + V
Sbjct: 127 SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER------VDMKS-GFAFVYFEDDRDAADAIRGLD 57
+++ NF E + LE+LFSK+G+I D KS GF FV FE+ DA A+ +
Sbjct: 65 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 124
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
R+L V A+ + R + + Q+ + L+V N D T D
Sbjct: 125 EYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDD--TVNDD 182
Query: 111 I-KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
I K++FE YG + ++ + F FV FE +EATKA+ + + + + V
Sbjct: 183 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 242
Query: 163 A 163
A
Sbjct: 243 A 243
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
+FV NF + ++EL +F YG+I + + KS GF F+ FE+ A A+ L+
Sbjct: 234 VFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELN 293
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D T E
Sbjct: 294 DKEV--NGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEM- 350
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F EEATKA+ ++ ++ + + V A
Sbjct: 351 LEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALA 410
Query: 164 LKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR--GRSPAYDRYNGPVYD 221
+ D R + R + P + P YG+ G P R NGP
Sbjct: 411 QRKDVRRSQLEQQIQARNQMRMQNAAAAGIPG-QFMPPMFYGQQPGFFPGNGRNNGPFPG 469
Query: 222 ---------------QRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRS 266
Q + P G + PVPVY P Y PN + R P R+
Sbjct: 470 PNPQMMMPRGQMPPPQGQWPRAGPNGQPVPVYG--MPPVYNDFNGPNGRQQRGYFPNNRN 527
Query: 267 R 267
+
Sbjct: 528 Q 528
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V + D A+
Sbjct: 50 SASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERAL 109
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ D R + W++ + R+G + +F+ N P + +
Sbjct: 110 EQLNYSLI--DGRPCRIMWSQRDPSLRRNGDGN---------IFIKNLHP-DIDNKALHD 157
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L ++ + F FV +ET E A A+E+ + L DR + V
Sbjct: 158 TFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFV 211
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER------VDMKS-GFAFVYFEDDRDAADAIRGLD 57
+++ NF E + LE+LFSK+G+I D KS GF FV FE+ DA A+ +
Sbjct: 201 VYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
R+L V A+ + R + + Q+ + L+V N D T D
Sbjct: 261 EYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDD--TVNDD 318
Query: 111 I-KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
I K++FE YG + ++ + F FV FE +EATKA+ + + + + V
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 378
Query: 163 A 163
A
Sbjct: 379 A 379
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
++VG+ + ++ L FS G + + + G+A+V F+ ADA R L
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQP---ADAERAL 76
Query: 57 DNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + I F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRRSGAGN---------IFIKNLDK-SIDNKAIYDTF 126
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A KA+E + L + + V
Sbjct: 127 SMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|427777525|gb|JAA54214.1| Putative alternative splicing factor asf/sf2 [Rhipicephalus
pulchellus]
Length = 333
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +FVG Y+ R+ +LER F YGRIE + +K+GF FV D RDA DA+R L+
Sbjct: 1 MATRVFVGRLNYDVRERDLERFFRGYGRIEDIVLKNGFGFVDISDYRDAEDAVRDLNGKR 60
Query: 61 FGYDRRRLSVEWARGER 77
+ R++VE ARG R
Sbjct: 61 LMGE--RVTVELARGMR 75
>gi|224138530|ref|XP_002322837.1| predicted protein [Populus trichocarpa]
gi|222867467|gb|EEF04598.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LE LFSKYGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYLDGKDF--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 148
+ R T + RTR RD++ F YG V V ++R++AFV+F +A A
Sbjct: 5 DDRYASTRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYL 64
Query: 149 DRSKLVDRVISVEYA 163
D I VE+A
Sbjct: 65 DGKDFDGSRIIVEFA 79
>gi|348687956|gb|EGZ27770.1| hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae]
Length = 838
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
++VGN + R E+E +F KYGRI +D+K FAFV FED RDA DAIRG D
Sbjct: 533 VYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDPRDAEDAIRGRDG- 591
Query: 60 PFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTK--TLFVINFDPIRTRERDIKRHF 115
+ YD RL VE A G R R + N R T T+ + N P R +D+K
Sbjct: 592 -YDYDGARLRVEPANGGRRESAPRGSGRYPRNIRGTGDYTVEISNLPP-RVSWQDLKDFM 649
Query: 116 EPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKL 153
G+V+ + R V++ + + A+E D S+
Sbjct: 650 RKAGDVVFTEVDGRGGGIVEYSNKRDMKYAVEKLDDSEF 688
>gi|255542752|ref|XP_002512439.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223548400|gb|EEF49891.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 444
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E++ LF KYG I RVD+++ G+AFV FED +A +AIRG
Sbjct: 6 SRTLYVGNLPGDIRWREVKDLFYKYGLIVRVDLRNPPRTPGYAFVQFEDACNAEEAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER---------------GRHRDGSKSMA-NQRPTKTL---F 97
D + ++ RL VE A G R GRH + ++ N P+K
Sbjct: 66 DG--YNFNGCRLRVELAYGGRKHSTPGHGGRKHSFPGRHYNTCSGISENHGPSKHSDHRV 123
Query: 98 VINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKL 153
++ P +D+K H G+V R+ V ++ ++ A++ D S+
Sbjct: 124 LVTGLPSSASWQDLKDHMRQAGDVCFSRVFPGRGGKTGIVDYKNYDDMKHAIKKLDDSEF 183
>gi|224088597|ref|XP_002308490.1| predicted protein [Populus trichocarpa]
gi|222854466|gb|EEE92013.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LE LFSKYGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYLDGKEF--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALEST 148
+ R T + RTR RD++ F YG V V ++R++AFV+F +A A
Sbjct: 5 DDRYASTRLYVGHLAARTRSRDLEHLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARHYL 64
Query: 149 DRSKLVDRVISVEYA 163
D + I VE+A
Sbjct: 65 DGKEFDGSRIIVEFA 79
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMK------SGFAFVYFEDDRDAADAIRGLD 57
++V N T +L+ +F ++G+I V MK GF FV FE+ DAA A+ L+
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLN 280
Query: 58 NIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G + ++ K A++ + L+V N D +
Sbjct: 281 GKTF--DDK----EWFVGRAQKKSEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVS 334
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F PYG V ++ R+ FV F T EEATKA+ + ++ +
Sbjct: 335 DEK-LKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLY 393
Query: 160 VEYA 163
V A
Sbjct: 394 VAVA 397
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ + S+L FS+ G++ V D+ + G+ +V F +DAA AI+ L
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQEL 101
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ IP + + + V ++ HRD S + +F+ N D + + F
Sbjct: 102 NYIPL--NGKPVRVMYS------HRDPS---VRRSGAGNIFIKNLDK-SIDHKALHDTFS 149
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN++ ++ + + FVQ+ET+E A KA+ + L D+ + V
Sbjct: 150 VFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYV 200
>gi|432864638|ref|XP_004070386.1| PREDICTED: uncharacterized protein LOC101162527 isoform 2
[Oryzias latipes]
Length = 373
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ VDMK+G+ FV FED+RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDMKNGYGFVEFEDNRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGER 77
R+ VE ARG R
Sbjct: 64 --RVIVEHARGPR 74
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMK------SGFAFVYFEDDRDAADAIRGLD 57
++V N T +L+ F +YG+I V MK GF FV FE+ DAA A+ L+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLN 276
Query: 58 NIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G R R+ K A++ + L+V N DP +
Sbjct: 277 GHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSIS 330
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F P+G V ++ R+ FV F T EEAT+A+ + + +
Sbjct: 331 DEK-LKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLY 389
Query: 160 VEYA 163
V A
Sbjct: 390 VAIA 393
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ + S+L FS+ G + V D+ + G+ +V F + +DAA AI+ L
Sbjct: 38 LYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 57 DNIP-FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ IP +G R + HRD S + +F+ N D + + F
Sbjct: 98 NYIPLYGKPIRVMY---------SHRDPS---VRRSGAGNIFIKNLDE-SIDHKALHDTF 144
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN++ ++ + + FVQ+ +E A KA+E + L D+ + V
Sbjct: 145 SVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + G+ FV + ++ A AI L+
Sbjct: 126 IFIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + R ER S AN+ ++V N T + D+K F
Sbjct: 186 GMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNVYVKNLAE-STTDDDLKNAFGE 237
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDR 156
YG + + ++ F FV FE ++A +A+ES + K D+
Sbjct: 238 YGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>gi|167379859|ref|XP_001735309.1| polyadenylate-binding protein, cytoplasmic and nuclear [Entamoeba
dispar SAW760]
gi|165902764|gb|EDR28498.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba dispar SAW760]
Length = 379
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N + + + +LF KYG I++V + G AFV F D RDA A L+
Sbjct: 25 SRILFVRNISFNANEESIRKLFEKYGEIKKVFCQIENRGIAFVTFYDIRDAIKAHEELNK 84
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVI--NFDPIRTRERDIKRHFE 116
D R + + ++ + + + S+ N L+VI F I T + +I +FE
Sbjct: 85 KEI--DGRPIKIHYSLP-KDNEINKTDSLENH---ANLYVILRGFQKIPTND-EIFHYFE 137
Query: 117 PYGNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA--LKDDSER 170
+G V +R + N F+++ A KALES++ ++ + I V+YA K D ER
Sbjct: 138 KFGEVSEIRDSADKPNIKFIEYYDSRAAVKALESSNNAQWNEGTIEVKYASFSKKDLER 196
>gi|1049088|gb|AAA93073.1| SRp55-1 [Homo sapiens]
Length = 344
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --HVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|51971529|dbj|BAD44429.1| unknown protein [Arabidopsis thaliana]
Length = 290
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVVFGDPRDADDARHYLDGRDF--D 70
Query: 65 RRRLSVEWARG 75
R++VE++RG
Sbjct: 71 GSRITVEFSRG 81
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++R++AFV F +A A D I+VE++
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVVFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 42/286 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR--IERVDMKS---------GFAFVYFEDDRDAADAI 53
+F+GN + + + +Y +E + + GF F+ F DA A
Sbjct: 234 LFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHEGLSRGFCFIQFACHDDAMFAF 293
Query: 54 RGLD--NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
+ L ++ FG+ R + V ++ E + D + MA K++F+ P +R +
Sbjct: 294 KRLQKPDVIFGHAERTVKVAFS--EPLQEPD-PEIMAK---VKSVFIDGLPPYWDEDR-V 346
Query: 112 KRHFEPYGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVD--RVISVE 161
++HF+ YG + V + RN F FV F T E A ++ ++ LVD I V
Sbjct: 347 RKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDINKKDLVDGNSKIKVR 406
Query: 162 YALKDDSERDDRYDSPRRGGYGRHSPYGRS---PSPAYRRRPSPDYGRGRSPAYDRYNGP 218
L + + RGG+ P GRS P P RP+ YGR +++ GP
Sbjct: 407 ARLSNPLPKMQAVKGGMRGGFRIGRPNGRSLGRPGPLI-NRPNFQYGRASRGSFNDPAGP 465
Query: 219 VYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFGRYRSRSPVR 264
RR P G H +P P P G P G + R PVR
Sbjct: 466 YV--RRHPHRGGHSAPGPSV-----PGRGNFGGPRHG-FIERGPVR 503
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
+F+G ++ E+ SK G ++ + S GFAFV +E R AA A R
Sbjct: 158 LFIGGIPKMKKREEILEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 217
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
L +++V+WA E D +++ K L+V N I T E IK+
Sbjct: 218 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KILYVRNLM-IETTEEAIKKS 270
Query: 115 FEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
F + G V V+ R++AFV F ++E+A +A+ S + ++L + V A D E+
Sbjct: 271 FGQFNPGCVERVKKIRDYAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYT 330
Query: 173 RYDSPRRGG 181
RY +GG
Sbjct: 331 RYQKAAKGG 339
>gi|296490264|tpg|DAA32377.1| TPA: splicing factor, arginine/serine-rich 9-like [Bos taurus]
Length = 221
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYG I +++K+ FAFV FED RDA DA+ G +
Sbjct: 16 IYVGNLPNDVREKDLEDLFYKYGHISEIELKNRHGLVPFAFVRFEDPRDAEDAVYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+G + RL VE+ R GR + ++ F +++ P +D+K H
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDETKF 170
>gi|341889616|gb|EGT45551.1| hypothetical protein CAEBREN_06053 [Caenorhabditis brenneri]
Length = 260
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDN 58
+ ++VGN + R E+E +F KYGRI+ +D+KSG FAFV FED RDA DA+R D
Sbjct: 10 QKVYVGNLPGDVRDKEVEDIFHKYGRIKYIDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 69
Query: 59 IPFGYDRRRLSVEWA 73
F D RR+ VE+
Sbjct: 70 YEF--DGRRIRVEFT 82
>gi|426232112|ref|XP_004010078.1| PREDICTED: uncharacterized protein LOC101116481 [Ovis aries]
Length = 233
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R+ VE ARG R R RDG
Sbjct: 64 --RVIVEHARGPR-RDRDG 79
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + E + +L++LF+ YG I + ++ GF FV +E A A+ L+
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K N R K LF+ N D E+
Sbjct: 295 DKEI--NGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK- 351
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + R+ + F FV F + EEATKA+ ++ + + V A
Sbjct: 352 LEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALA 411
Query: 164 LKDDSER 170
+ D R
Sbjct: 412 QRKDVRR 418
>gi|224123814|ref|XP_002330215.1| predicted protein [Populus trichocarpa]
gi|222871671|gb|EEF08802.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FED DA AIRGL
Sbjct: 5 SRTLYVGNLPGDIRVREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDAHDAKYAIRGL 64
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTL---FVINFDPIRT 106
D + +D RL VE A G R RH S S ++ P K +++ P
Sbjct: 65 DG--YNFDACRLRVELAHGGR-RHSSPVDRYSSYSGSSGSRGPPKHSDYRVLVSGLPSSA 121
Query: 107 RERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + ++ A++ D S+
Sbjct: 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEF 172
>gi|297820078|ref|XP_002877922.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
gi|297323760|gb|EFH54181.1| hypothetical protein ARALYDRAFT_323893 [Arabidopsis lyrata subsp.
lyrata]
Length = 284
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 65 RRRLSVEWARGE-RGRHRDGSK 85
R++VE +RG RG +GS+
Sbjct: 71 GSRITVEASRGAPRGSRDNGSR 92
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 144
RTR RD++R F YG V V ++R++AFV+F +A A
Sbjct: 21 RTRARDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
>gi|260833614|ref|XP_002611807.1| hypothetical protein BRAFLDRAFT_243385 [Branchiostoma floridae]
gi|229297179|gb|EEN67816.1| hypothetical protein BRAFLDRAFT_243385 [Branchiostoma floridae]
Length = 177
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E +F KYG I +D+K+ FAFV F+D RDA DA+RG D
Sbjct: 10 IYVGNLPPDIRVKDIEDIFYKYGNIRHIDLKNKRGPPFAFVEFDDKRDAEDAVRGRDG-- 67
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMAN-QRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+ YD RL VE+ RG G + + R ++ +++ P +D+K H G
Sbjct: 68 YNYDGYRLRVEFPRGTSRGGYRGGRRVGQPSRRSEYRVLVSGLPPTGSWQDLKDHMREAG 127
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + + R+ V+F E+ A++ D SK
Sbjct: 128 DVCYADVFRDGTGVVEFLNYEDMKYAVKQLDDSKF 162
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N +T E E F+K G I ++ GF FV +E+ DAA A+ L+
Sbjct: 225 VYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELN 284
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
F + L V A+ + R ++ K R K LFV N D ++
Sbjct: 285 ETDF--KGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVNLFVKNLDDT-IDDQK 341
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + V++ R+ F FV F T EEATKA+ ++ + + + V A
Sbjct: 342 LEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 401
Query: 164 LKDDSER 170
+ D R
Sbjct: 402 QRKDVRR 408
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 20/175 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FEDD A +AI ++
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAIN 191
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ ++ +R D +K AN ++V N P T + + + F
Sbjct: 192 GMLLNGQEVYVAQHVSKKDRQSKLDEAK--AN---FTNVYVKNIHP-DTGDEEFEEFFTK 245
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G + + R F FV +E +A KA+E + + + + V A K
Sbjct: 246 VGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQK 300
>gi|356572373|ref|XP_003554343.1| PREDICTED: uncharacterized protein LOC100789862 [Glycine max]
Length = 287
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LER FS+YGR+ VDMK+ FAFV F D RDA DA LD D
Sbjct: 13 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDG--RDVD 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
T + RTR RD++R F YG V V ++ +FAFV F +A A + D +
Sbjct: 11 TRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVD 70
Query: 155 DRVISVEYA 163
I VE+A
Sbjct: 71 GSRIIVEFA 79
>gi|90075970|dbj|BAE87665.1| unnamed protein product [Macaca fascicularis]
Length = 177
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRD----GSKSMANQRPTKTL 96
R+ VE ARG R R RD GS+S ++ R + L
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSESHPRALRAL 96
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E+LFS +G+I + D KS GF FV FED A A+ L+
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 295 DKEI--NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEK- 351
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ + + + + V A
Sbjct: 352 LEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Query: 164 LKDDSER 170
+ D R
Sbjct: 412 QRKDVRR 418
>gi|348505538|ref|XP_003440318.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 244
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAF+ FED RDA DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMA-------NQRPTKTLFVINFDPIRTRERDIK 112
+ YD RL VE+ R RG A R ++ V++ P +D+K
Sbjct: 75 -YDYDGYRLRVEFPRSGRGSRGGFGIGGAPRGRYGPPSRRSEYRVVVSGLPQSGSWQDLK 133
Query: 113 RHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 134 DHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 175
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 61/302 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++ N + + + E ++LF YG+I + ++ GF FV FE+ A A+ L+
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K N R K LF+ N D E+
Sbjct: 294 DKEI--NGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK- 350
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G++ R+ + F FV F + EEATKA+ ++ + + + V A
Sbjct: 351 LEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALA 410
Query: 164 LKDDSERDD------------RYDSPRRGGYGRHSPYGRSPSPAYRRRPS--PDYGRGRS 209
+ D R ++ GG P P Y ++P P GRG
Sbjct: 411 QRKDVRRSQLEQQIQARNQMRMQNAAATGGI----PGQFIPPMFYGQQPGFFPPNGRGNG 466
Query: 210 PAYDRYNGPVYD-----------QRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSPNFGR 256
P + GP Q + P G + PVPVY P YG N N GR
Sbjct: 467 P----FPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYG--MPPVYGGDFNNGANGGR 520
Query: 257 YR 258
+
Sbjct: 521 QQ 522
>gi|449671409|ref|XP_002154856.2| PREDICTED: uncharacterized protein LOC100200766 [Hydra
magnipapillata]
Length = 983
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRG 55
+R +FVGN E EL +F ++G + VD+K + +AFV + D A A R
Sbjct: 77 TRTVFVGNIEKTMMHGELRSIFERFGDVVDVDIKKMQTGQTTYAFVQYIDINGAMFAKRK 136
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+D G+ ++ + RG PT L++ N P + + + F
Sbjct: 137 MDREYIGHTIVKIG--YGRGT---------------PTNCLWIGNL-PTNVVDHQLSKIF 178
Query: 116 EPYGNVLHVRIRRNF--AFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
P+G V H I + F A ++FET E T A + ++V+YA
Sbjct: 179 HPFGYVQHCLIDKRFWQALIRFETIEACTHAFAEMHGKHFQGKRLAVDYA 228
>gi|224072369|ref|XP_002303703.1| predicted protein [Populus trichocarpa]
gi|222841135|gb|EEE78682.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 24/186 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKY---GRIERVDMKS----------GFAFVYFEDDRD 48
SR +FV N ++T L++ FS++ GRI+ V +K GF F+ F+
Sbjct: 577 SRSLFVKNLNFKTADESLKKHFSEHMKEGRIQSVRIKKHMKKGKNVSMGFGFIEFDSVET 636
Query: 49 AADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
A + R L D L ++ ++ H K + + L V N E
Sbjct: 637 ATNICRDLQGTVL--DGHALILQLCHAKKDEH--SVKKAGKDKSSTKLLVRNV-AFEATE 691
Query: 109 RDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
+D+++ F P+G + +R+ R FAFV++ T++EA AL++ + L R + +E
Sbjct: 692 KDLRQLFGPFGQIKSLRLPMKFGNHRGFAFVEYVTKQEAQNALQALSSTHLYGRHLVLER 751
Query: 163 ALKDDS 168
A + +S
Sbjct: 752 AKEGES 757
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
+FV N Y + ELE FSK+G I +V + G A++++ AA A+ L
Sbjct: 265 LFVRNLPYTAIEDELEEHFSKFGNISQVHLVVDKDTKRSKGLAYIHYTLPESAARALEEL 324
Query: 57 DNIPF 61
DN F
Sbjct: 325 DNSIF 329
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E E+LF+ YG+I + D KS GF FV FE+ A A+ L+
Sbjct: 232 IYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELN 291
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 292 DKEI--NGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEK- 348
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ ++ + ++ + V A
Sbjct: 349 LEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALA 408
Query: 164 LKDDSER 170
+ D R
Sbjct: 409 QRKDVRR 415
>gi|384950064|gb|AFI38637.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 216
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKTRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G + RL VE+ R GR ++ F + + +D+K H G
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVL---VSGSWQDLKDHMREAG 130
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 131 DVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 165
>gi|198421230|ref|XP_002126938.1| PREDICTED: similar to splicing factor, arginine/serine-rich 4
isoform 2 [Ciona intestinalis]
Length = 280
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G + R++++E F YG+I + +K+GF FV F+D+RDA DAI L+ +
Sbjct: 7 VYIGRLSHRARENDVEHFFRGYGKINDLMLKNGFGFVIFDDERDADDAIHDLNGKSLCGE 66
Query: 65 RRRLSVEWA--RGERGRH-------------------RDGSKSMANQRPTKTLFVINFDP 103
R L + RG G R +K + N L V N
Sbjct: 67 RVMLEIAKGTPRGPGGDRRESSSRRSSSSSYYQQQQPRSSTKGIPNH--GYRLIVENLSS 124
Query: 104 IRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
R +D+K + G V++ R RRN V+F +++E A+E + +++ R I +
Sbjct: 125 -RVTWQDLKDYMRQCGEVVYADANRYRRNEGVVEFSSRKEMKYAIEKLNGTEINGRHIKL 183
Query: 161 EYALK 165
+K
Sbjct: 184 TPNIK 188
>gi|312088410|ref|XP_003145851.1| arginine/serine-rich splicing factor 3 [Loa loa]
gi|307758983|gb|EFO18217.1| arginine/serine-rich splicing factor 3 [Loa loa]
Length = 228
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 1 MSRP--IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIR 54
MSR I+VGN R ++E +FSKYG++ VD+K FAFV FED RDA DA+R
Sbjct: 1 MSRESRIYVGNLPTTVRAKDVEDIFSKYGKVLYVDLKDRRQPYFAFVEFEDARDAEDAVR 60
Query: 55 GLDNIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSM------ANQRPTKTLF 97
G D + Y+ RL VE+ RG + GR+ S++ + R
Sbjct: 61 GRDG--YDYEGYRLRVEFPRGLGPRGPGGRPYDTGRNLSLSRNASGGGSSSGGRRANYRV 118
Query: 98 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+++ P +D+K H G+V + + R+ V++ E+ AL D +K
Sbjct: 119 IVSGLPASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKF 175
>gi|30693839|ref|NP_190918.3| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|75334513|sp|Q9FYB7.1|RSZ32_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z32;
AltName: Full=RS-containing zinc finger protein 32;
Short=At-RS2Z32; Short=At-RSZ32
gi|9795142|emb|CAB67657.2| splicing factor-like protein [Arabidopsis thaliana]
gi|222422875|dbj|BAH19424.1| AT3G53500 [Arabidopsis thaliana]
gi|332645577|gb|AEE79098.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 284
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 65 RRRLSVEWARGE-RGRHRDGSK 85
R++VE +RG RG +GS+
Sbjct: 71 GSRITVEASRGAPRGSRDNGSR 92
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 144
RTR RD++R F YG V V ++R++AFV+F +A A
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
>gi|9843663|emb|CAC03605.1| splicing factor RSZ33 [Arabidopsis thaliana]
Length = 290
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 65 RRRLSVEWARG 75
R++VE++RG
Sbjct: 71 GSRITVEFSRG 81
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE++
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|30687109|ref|NP_850280.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
gi|75331124|sp|Q8VYA5.1|RSZ33_ARATH RecName: Full=Serine/arginine-rich splicing factor RS2Z33;
AltName: Full=RS-containing zinc finger protein 33;
Short=At-RS2Z33; Short=At-RSZ33
gi|18252179|gb|AAL61922.1| unknown protein [Arabidopsis thaliana]
gi|21386957|gb|AAM47882.1| unknown protein [Arabidopsis thaliana]
gi|51971244|dbj|BAD44314.1| unknown protein [Arabidopsis thaliana]
gi|330254293|gb|AEC09387.1| arginine/serine-rich zinc knuckle-containing protein 33
[Arabidopsis thaliana]
Length = 290
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 65 RRRLSVEWARG 75
R++VE++RG
Sbjct: 71 GSRITVEFSRG 81
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE++
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>gi|358336433|dbj|GAA54942.1| splicing factor arginine/serine-rich 1/9 [Clonorchis sinensis]
Length = 251
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 22/168 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + + ++E LFSKYG I +D+KS FAF+ FED+ DAADA+RG D
Sbjct: 8 IYVGNLPPDVKTRDVENLFSKYGPIAEIDLKSRRGPPFAFIEFEDELDAADAVRGRDG-- 65
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------------FVINFDPIRT 106
+ +D L VE+ RG + +GS N V+ P
Sbjct: 66 YNFDGYALRVEFPRGGTASY-NGSGGNFNSFRRGGFGRGGGGPSRRSDFRVVVTGLPPTG 124
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + + R+ V+F E+ A+ D SK
Sbjct: 125 SWQDLKDHMREAGDVGYADVFRDGTGVVEFLRYEDMKYAVRKLDDSKF 172
>gi|432091266|gb|ELK24470.1| RNA-binding protein 28 [Myotis davidii]
Length = 762
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 46/238 (19%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYF---EDDRDAADAI 53
+FVG R +LE LFS+ G +++ + + GF +V F ED + A I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMREDVQRALKEI 65
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT-------KTLFVINFDPIRT 106
+ + ++ E+G + + Q+P K +I +
Sbjct: 66 TTFEGCKINVSVAKKKLKNKSKEKGGNENSESPKKEQKPKRAKVADKKARLIIRNLSFKC 125
Query: 107 RERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E D+K F YG VL V I R FAFVQF+ EA KAL+S + ++ R ++
Sbjct: 126 SEDDLKTIFAQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVA 185
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNG 217
V++A+ D+Y S + + +P ++P P + + D+ NG
Sbjct: 186 VDWAVA-----KDKYKSTQ-----------SASAPGEEKQPEPKHQK-----LDKVNG 222
>gi|356505156|ref|XP_003521358.1| PREDICTED: uncharacterized protein LOC100812698 [Glycine max]
Length = 287
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LER FS+YGR+ VDMK+ FAFV F D RDA DA LD D
Sbjct: 13 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
T + RTR RD++R F YG V V ++ +FAFV F +A A + D +
Sbjct: 11 TRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVD 70
Query: 155 DRVISVEYA 163
I VE+A
Sbjct: 71 GSRIIVEFA 79
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V NF E +L+ +F YG+I + + GF FV FE+ +A A++ L+
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELN 253
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGS---KSMANQRPTK----TLFVINFDPIRTRERD 110
+ G + +++ V A+ + R D + + +R T+ L+V N D + ER
Sbjct: 254 DKELG-NGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDER- 311
Query: 111 IKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
++R F PYG + ++ + F FV F + EEATKA+ + +V + + V
Sbjct: 312 LRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVAL 371
Query: 163 ALKDDSERDDRYDSPRRGGYGRHSPYGRSP 192
A + + R + G P+G+ P
Sbjct: 372 AQRKEDRRAHLSSQFVQRFTGVRVPFGQMP 401
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ + + +S L F + G + + DM S G+A+V F DA R L
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNF---HQPGDAERAL 69
Query: 57 DNIPFG-YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F R + + W++ + + G +F+ N + I F
Sbjct: 70 DTMNFEPLKNRPMRIMWSQRDPSLRKSG---------VGNVFIKNLHK-DIDNKAIFDTF 119
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L R+ R + FV FET+E A +A+ + L ++ + V
Sbjct: 120 SAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFV 171
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
+F N + ++ + F +G IE +KS + FV ++D DA A+ L++
Sbjct: 213 VFFKNVAADISDEDIMKEFENFGEIESKVLKSHDQFGRYGFVAYKDTADAQKAVSELNDK 272
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPT---------KTLFVINFDPIRTRERD 110
P G D +L V AR +R R G +R L++ NF T E +
Sbjct: 273 PLGADGTKLYV--ARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDVT-EDE 329
Query: 111 IKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTD 149
+++ FE YG ++ VR+ R F FV F ++EEAT+A++ +
Sbjct: 330 LRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMN 375
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 42/183 (22%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERV----DMKS----GFAFVYFEDDRDAADA 52
S ++VG+ + ++EL F+ +G ++ V DM + G+ +V F DAA
Sbjct: 28 SASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAAKV 87
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTK------TLFVINFDPIR 105
+ E +G+ R M ++R PTK +F+ N
Sbjct: 88 YEAAN------------FEELKGQPVR------IMFSERDPTKRRSGVGNIFIKNLSA-E 128
Query: 106 TRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ + F +G VL R+ R AFVQ+E E A + + + K++D+V+
Sbjct: 129 VDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILDKVV 188
Query: 159 SVE 161
VE
Sbjct: 189 KVE 191
>gi|224123080|ref|XP_002318990.1| predicted protein [Populus trichocarpa]
gi|222857366|gb|EEE94913.1| predicted protein [Populus trichocarpa]
Length = 224
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 22/171 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R E+E LF KYG I +D+K G+AFV FE+ RDA DAIRG
Sbjct: 5 SRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDAIRGR 64
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD-------GSKSMANQRPTKTL---FVINFDPIRT 106
D + +D RL VE A G R RH S S ++ P+K ++ P
Sbjct: 65 DG--YNFDGCRLRVELAHGGR-RHSSPVDHYSSYSGSSGSRGPSKRSDYRVLVTGLPSSA 121
Query: 107 RERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ R+ V + ++ A++ D S+
Sbjct: 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEF 172
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
+FVG ++ E+ SK G ++ + S GFAFV +E R AA A R
Sbjct: 141 LFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARR 200
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
L +++V+WA E D KS+ K L+V N + T E +K
Sbjct: 201 KLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKSV------KVLYVRNLL-LTTTEESLKES 253
Query: 115 FEPY---GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD 171
FE G+V V+ R++AFV F+T+EEA KA+ +T+ +L+D VE L +RD
Sbjct: 254 FENVVSPGSVERVKKIRDYAFVHFKTREEAVKAMNATN-GQLIDGC-QVEVTLAKPVDRD 311
Query: 172 DRYDSPRRGGYGRHSPYGRSPS 193
+ R G GR P P+
Sbjct: 312 NYVRYTR--GAGRGMPMEIYPT 331
>gi|158254720|dbj|BAF83333.1| unnamed protein product [Homo sapiens]
Length = 221
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+G + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+ + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDACYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>gi|149043028|gb|EDL96602.1| similar to dJ862K6.2.2 (splicing factor, arginine/serine-rich 6
(SRP55-2)(isoform 2)), isoform CRA_c [Rattus
norvegicus]
Length = 95
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L++ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDG 83
R+ VE ARG R R RDG
Sbjct: 64 --RVIVEHARGPR-RDRDG 79
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 26/167 (15%)
Query: 5 IFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN + +T EL LF+ YG + + FAFV+ ++ A AI L G+
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALH----GH 58
Query: 64 DR---RRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
+ R L VE +R RP T +FV N T + +++R FE
Sbjct: 59 ELRPGRALVVEMSR---------------PRPLNTWKIFVGNVSAACTSQ-ELRRLFERR 102
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G V+ + +++AFV E + +A A+ + ++ + I+VE + K
Sbjct: 103 GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL RLF + GR+ D+ +AFV+ E + DA AI
Sbjct: 70 MSRPRPLNTWKIFVGNVSAACTSQELRRLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 129
Query: 54 RGLDNIPFGYDRRRLSVEWA-RGER 77
L+ +R++VE + +G++
Sbjct: 130 AQLNGKEV--KGKRINVELSTKGQK 152
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V NF T L +FS+YG + V + + GF F+ FE DA AI ++
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVN 260
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ-RPTK----TLFVINFDPIRTRERDIK 112
FG + +S + ER Q R K +LFV N T + ++
Sbjct: 261 GKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAE-STDDEHLR 319
Query: 113 RHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
+ F P+G V ++ R+ F FV F ++EEA KA+E L R + V YA
Sbjct: 320 KIFAPFGTVTSAKVIVKGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYA--- 376
Query: 167 DSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD 203
RY RR + + YG+ + + +PD
Sbjct: 377 ------RYKQERRAYFASY--YGKKKASPAKSPSTPD 405
>gi|426227971|ref|XP_004008088.1| PREDICTED: RNA-binding protein 28 isoform 1 [Ovis aries]
Length = 749
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 49/229 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ R+++V A+ + R + ++ K+ ++ P K L +I
Sbjct: 66 TT----FEGRKINVTVAKKKLRNKSKEKGKTENSESPKKELKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F +G +L V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
R ++V++A+ D ++ + S P +RP P++
Sbjct: 182 RTVAVDWAVAKDKYKNTQSTS----------------VPGEEKRPEPEH 214
>gi|1049086|gb|AAA93072.1| SRp55-3, partial [Homo sapiens]
Length = 335
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --HVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|357163167|ref|XP_003579645.1| PREDICTED: protein MEI2-like 4-like [Brachypodium distachyon]
Length = 957
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 38/274 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +F+ N + SELE LF KYG I+ + GF V + D R A A++ L +
Sbjct: 236 SRTLFIRNIDGIVEDSELELLFQKYGEIQTLYTACKHHGFVMVSYYDIRSAETAMKALQS 295
Query: 59 IPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
PF +L + ++ E +D ++ TL V N DP T + D++ F
Sbjct: 296 KPF--RNWKLDIHYSVPKENTLEKDNNQG--------TLAVFNLDPSVTND-DLRHIFGG 344
Query: 118 YGNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
YG + + + + +++F A AL +RS + + I + D++R
Sbjct: 345 YGKIKEIHETSQQGHHKYIEFYDVRAAEAALYVLNRSDIAGKTIKLVPCCVGDTKR---- 400
Query: 175 DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSP 234
+H P G P +P G SP + Y G V P+HG R
Sbjct: 401 -------LMQHRPPGLEPEDFGVCKP----GNATSPLTNYY-GSVNMASTGPEHGISR-- 446
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
V R P + R NF S +P +S +
Sbjct: 447 --VVRTRVQPPINQFRERNFLDIPSITPQSQSMS 478
>gi|340367697|ref|XP_003382390.1| PREDICTED: hypothetical protein LOC100636101 [Amphimedon
queenslandica]
Length = 1557
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R +FVGN +L +F +YG I V++K + + FV F + A +A + +
Sbjct: 279 TRSLFVGNIHKNVSIYDLRDVFQRYGHILDVEIKKMSGNATYGFVLFFNLLSAINAKKAM 338
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D G R R+ V + +G P+K L++ D E +K HF
Sbjct: 339 DGAQLG--RNRIRVGFGKGT---------------PSKVLWIDGID-ASLNETQVKSHFS 380
Query: 117 PYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVD 155
YG V+ + I R+ A VQF+ +EA AL S S + +
Sbjct: 381 KYGTVVRIGIDRSTYTAMVQFDKVDEAKDALSSVKGSFICN 421
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 17/184 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + + L F+ +G + + + G+ FV++E A AI+ ++
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVN 193
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + +R R R SK + ++V N DP T++ D + FE
Sbjct: 194 GMLLNDKKVYVGHHISRKASSRERQ-SKLEEMKAQFTNIYVKNLDPEVTQD-DFVKLFEQ 251
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+GNV I+ R F FV FET EEA KA+E+ S+ R + V A K +ER
Sbjct: 252 FGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQK-KAER 310
Query: 171 DDRY 174
++
Sbjct: 311 EEEL 314
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + E Q + +LF ++G + +++ GF FV FE +A A+ L
Sbjct: 231 IYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLH 290
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ Y R+L V A+ + R + KS + K L++ N + ER
Sbjct: 291 DSE--YHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDER- 347
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+++ FEP+G++ ++ R+ F FV F + +EATKA+ + + + + V A
Sbjct: 348 LRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLA 407
>gi|426193472|gb|EKV43405.1| hypothetical protein AGABI2DRAFT_195055 [Agaricus bisporus var.
bisporus H97]
Length = 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++VGN + + ++ LF YG+++RV + S GF FV +++ +A AI
Sbjct: 80 LYVGNIPFTAGEVDIRELFEPYGQVKRVTLASDRNGRLTGFGFVEYDNMENAVAAIESSY 139
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
PF R L + +A H N P KT+ + NF PI ER ++ +
Sbjct: 140 QEPFALLNRTLKLNYA------HNRNPFEAKNVEPAKTISIANF-PIPGDERPLRHLMQK 192
Query: 118 YGNVLHVRIRRNF-----------AFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
Y H+ +R NF F++F QE AT ALE+ + ++YA
Sbjct: 193 YEE--HI-VRINFMKNADGEFTSRVFIEFADQENATAALEAFQDYNFEGTMFKIDYA 246
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------- 129
R RD +R ++ + P E DI+ FEPYG V V + +
Sbjct: 60 RSEGRDARSEFPEEREKTSVLYVGNIPFTAGEVDIRELFEPYGQVKRVTLASDRNGRLTG 119
Query: 130 FAFVQFETQEEATKALESTDRS--KLVDRVISVEYA 163
F FV+++ E A A+ES+ + L++R + + YA
Sbjct: 120 FGFVEYDNMENAVAAIESSYQEPFALLNRTLKLNYA 155
>gi|383422447|gb|AFH34437.1| serine/arginine-rich splicing factor 9 [Macaca mulatta]
Length = 216
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G + RL VE+ R GR ++ F + + +D+K H G
Sbjct: 76 DYG--QCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRV---LVSGSWQDLKDHMREAG 130
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 131 DVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 165
>gi|301114008|ref|XP_002998774.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112075|gb|EEY70127.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 392
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VGN YE Q ++E F K+G IE+ +K G+AFV++E DA A++ +++ G
Sbjct: 11 LYVGNLFYELTQRDVEAEFGKFGPIEQCAVKKGYAFVHYEQLEDAELAVQEMNDKELGGR 70
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQ----------------RPTKTLFVINFDP-IRTR 107
R R++ + G + R M N + LFV N P I+
Sbjct: 71 RLRVAFAVSHGTQRRFDGPPPPMQNNASPAPPPLLHSPRFPVNASPNLFVANIPPHIKMS 130
Query: 108 ERDIKRHFEPYGNVLHVRIRRNF-------AFVQFETQEEATKALESTDRSKLVDRVISV 160
E D + F +G V +V++ AFV + A KA +T +++
Sbjct: 131 ELD--QAFAQFGEVKNVKVLPQARPDAPMSAFVDYTDISSAQKAHSATI-------IVAG 181
Query: 161 EYALKDDSERDDRYDSPRR 179
++ D + R + D P+R
Sbjct: 182 QHLRTDYNFRKSKGDGPKR 200
>gi|409076231|gb|EKM76604.1| hypothetical protein AGABI1DRAFT_115701 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 266
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++VGN + + ++ LF YG+++RV + S GF FV +++ +A AI
Sbjct: 80 LYVGNIPFTAGEVDIRELFEPYGQVKRVTLASDRNGRLTGFGFVEYDNLENAVAAIESSY 139
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
PF R L + +A H N P KT+ + NF PI ER ++ +
Sbjct: 140 QEPFALLNRTLKLNYA------HNRNPFEAKNVEPAKTISIANF-PIPGDERPLRHLMQK 192
Query: 118 YGNVLHVRIRRNF-----------AFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
Y H+ +R NF F++F QE AT ALE+ + ++YA
Sbjct: 193 YEE--HI-VRINFMKNADGEFTSRVFIEFADQENATAALEAFQDYNFEGTMFKIDYA 246
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN------- 129
R RD +R ++ + P E DI+ FEPYG V V + +
Sbjct: 60 RSEGRDARSEFPEEREKTSVLYVGNIPFTAGEVDIRELFEPYGQVKRVTLASDRNGRLTG 119
Query: 130 FAFVQFETQEEATKALESTDRS--KLVDRVISVEYA 163
F FV+++ E A A+ES+ + L++R + + YA
Sbjct: 120 FGFVEYDNLENAVAAIESSYQEPFALLNRTLKLNYA 155
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
+F+G ++ E+ SK G ++ + S GFAFV +E R AA A R
Sbjct: 158 LFIGGIPKMKKREEILEEISKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 217
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
L +++V+WA E D +++ K L+V N I T E IK+
Sbjct: 218 KLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KILYVRNLM-IETTEEAIKKS 270
Query: 115 FEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
F + G V V+ R++AFV F ++E+A +A+ S + ++L + V A D E+
Sbjct: 271 FGQFNPGCVERVKKIRDYAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKPVDKEQYT 330
Query: 173 RYDSPRRGG 181
RY +GG
Sbjct: 331 RYQKAAKGG 339
>gi|196004432|ref|XP_002112083.1| hypothetical protein TRIADDRAFT_63876 [Trichoplax adhaerens]
gi|190585982|gb|EDV26050.1| hypothetical protein TRIADDRAFT_63876 [Trichoplax adhaerens]
Length = 331
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 37/164 (22%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+F+G +ET + L++ FSK+G I +K+ GFAFV F + AD + L
Sbjct: 75 MFIGGLNWETTEEGLQKYFSKFGTIVSSTIKNDPITHRSRGFAFVTFA---NPADVDKVL 131
Query: 57 DNIPFGYD------RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 110
++ P D +R L + +G+HR TK +F+ T E
Sbjct: 132 ESGPHQLDNRTVDPKRALPLHKQIQLKGQHR-----------TKKIFIGGLGAEHT-ESS 179
Query: 111 IKRHFEPYGNVLHV--------RIRRNFAFVQFETQEEATKALE 146
+K F +GN+L V R RR F F+ F+T+E KA E
Sbjct: 180 LKEFFSEFGNILDVEFVTDKLTRKRRGFCFLSFDTEEAVDKACE 223
>gi|42565781|ref|NP_190512.3| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|334185842|ref|NP_001190041.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|124301106|gb|ABN04805.1| At3g49430 [Arabidopsis thaliana]
gi|332645020|gb|AEE78541.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|332645022|gb|AEE78543.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
Length = 300
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E +F KYGRI +++K + FV FE RDA DAI+G
Sbjct: 5 FSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR 79
D + D RL VE A G RG+
Sbjct: 65 RDG--YNLDGCRLRVELAHGGRGQ 86
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKS-GFAFVYFEDDRDAADAIRGL 56
IFVG+ E L+ F+ +G I +KS G+AFV F +A AI +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 157
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSK----SMANQR-PTK-TLFVINFDP 103
+ G R + W+ + H + SK + NQ PT T++ F
Sbjct: 158 NGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTNCTVYCGGFTN 215
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
T E IK+ F P+G + +R+ ++ +AF++F T+E AT A+EST +++ ++
Sbjct: 216 GITDEL-IKKTFSPFGTIQDIRVFKDKGYAFIKFTTKEAATHAIESTHNTEINGSIVKCF 274
Query: 162 Y 162
+
Sbjct: 275 W 275
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLD 57
R ++VGN + + L LFS+ G ++ + +AFV F + + AA A+ ++
Sbjct: 8 RTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQSAATALAAMN 67
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + + V WA G++ + +FV + P + +K F P
Sbjct: 68 KRSF--LDKEMKVNWAT------SPGNQPKLDTSNHHHIFVGDLSP-EIETQTLKEAFAP 118
Query: 118 YGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+G + + RI R+ +AFV F + EA A+ + + L R I ++
Sbjct: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWS 172
>gi|294461096|gb|ADE76115.1| unknown [Picea sitchensis]
Length = 298
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R ++VGN + R+ ++E +F KYG + ++D+K G+ F+ FE+ RDA DAIRG
Sbjct: 6 NRILYVGNLPVDFRERDIEDIFHKYGPVVKIDLKFPPRPPGYCFIEFENARDAEDAIRGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR---HRDGSKSMANQRPTKTL-------FVINFDPIRT 106
D + D RL VE A G RG R S S R L I+ P
Sbjct: 66 DG--YDIDGHRLRVELAHGGRGALSVDRYSSFSSGGGRRNGRLQSHCDYRVTISGLPSSA 123
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTD 149
+D+K H G+V ++ R+ + ++ + A + L+ T+
Sbjct: 124 SWQDLKDHMRRAGDVTFAQVFRDSNGTTGVVDYTNYDDMKYAIRKLDDTE 173
>gi|221130960|ref|XP_002164119.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Hydra magnipapillata]
Length = 264
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
IFVG E R +LE F G R++ V++K G+AFV FED RDA DA+ LD F
Sbjct: 12 IFVGRLNPEARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEFF 71
Query: 63 YDRRRLSVEWA---------RGERGRHRDGSKSMANQRPTKT---LFVINFDPIRTRERD 110
R++VE A RGER R + RP T L V N R D
Sbjct: 72 GS--RITVEHATGTARGGDTRGERDRGGYSVRERGRGRPYNTEWRLIVTNLSS-RVGWMD 128
Query: 111 IKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+K +F G V + R V+F + E +AL+ D S+ DR I L DD
Sbjct: 129 LKDYFRSAGEVTFTKANKERVGEGVVEFRSYREMKRALKKFDGSEFFDRRIK----LIDD 184
Query: 168 S 168
S
Sbjct: 185 S 185
>gi|12324445|gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E +F KYGRI +++K + FV FE RDA DAI+G
Sbjct: 5 FSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR 79
D + D RL VE A G RG+
Sbjct: 65 RDG--YNLDGCRLRVELAHGGRGQ 86
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 65/181 (35%), Gaps = 19/181 (10%)
Query: 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEAT 142
P LFV RT +K+ F +G V+ R+ + F FV++ + E+A
Sbjct: 49 EPNTNLFVSGLSK-RTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAE 107
Query: 143 KALESTDRSKLVDRVISVEYA-----LKDDSERDDRYDSPRRGGYGRH--SPYGRSPSPA 195
K +E D L VI EYA L + Y + YG S YG S A
Sbjct: 108 KGIEGMDGKFLDGWVIFAEYARPRPPLPGN-NTGSAYGNNTGSAYGNSTGSAYGNSTGSA 166
Query: 196 YRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYDRRRSPDYGRNRSPNFG 255
Y YG AY G Y +G S Y YG N +P FG
Sbjct: 167 YGNSTGSAYGNSTGSAYGNSTGSAYGNSTGSAYG--NSTGSAYGNSTGSAYGSNTTPAFG 224
Query: 256 R 256
Sbjct: 225 N 225
>gi|6561944|emb|CAB62448.1| PRE-MRNA SPLICING FACTOR SF2-like protein [Arabidopsis thaliana]
Length = 243
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R+ E+E +F KYGRI +++K + FV FE RDA DAI+G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGR 79
D + D RL VE A G RG+
Sbjct: 66 DG--YNLDGCRLRVELAHGGRGQ 86
>gi|148907387|gb|ABR16827.1| unknown [Picea sitchensis]
Length = 432
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 39/236 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYG-RIERVDMKS-------GFAFVYFEDDRDAADAIRGL 56
+F+G +ET + L+ F YG +E V M+ GF F+ F + ++
Sbjct: 8 VFIGGISWETTEETLKEYFKVYGDVVETVIMRDKMTGRARGFGFIGFSEPTAVDRVLQDK 67
Query: 57 DNIPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
I D R++ ++ A +R + GS A R TK +FV P T E D K
Sbjct: 68 HTI----DGRQVELKRAVPREEHQRNAQKSGSNVGAGPR-TKKIFVGGLAPTVT-EDDFK 121
Query: 113 RHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+FE +G + V + R F F+ F++ EEA + + +L D+ + V+ AL
Sbjct: 122 GYFEQFGTITDVVVMYDHISQRPRGFGFITFDS-EEAVDKVVMKNFHELHDKTVEVKRAL 180
Query: 165 -KDDSERDDRYDSPRRGGYG--RHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNG 217
K+ S R S G YG ++S YG P P GRG P Y G
Sbjct: 181 PKEMSPGSARARSSPAGPYGNPQNSRYG---------APQPPAGRGGYPPYGAVQG 227
>gi|197692203|dbj|BAG70065.1| splicing factor arginine/serine-rich 6 [Homo sapiens]
gi|197692451|dbj|BAG70189.1| splicing factor arginine/serine-rich 6 [Homo sapiens]
Length = 135
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 65 RRRLSVEWARGERGRHRDG 83
R+ VE ARG R R RDG
Sbjct: 62 GERVIVEHARGPR-RDRDG 79
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGL- 56
+FV N T + EL ++F ++G I V D KS F FV FE+ DAA A+ L
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 57 ----DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
DN + R + E + R +K ++ L++ N D + E+ +K
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISDEK-LK 326
Query: 113 RHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F PYG + ++ R+ FV F EEA++AL + +V + + V A
Sbjct: 327 ELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALA 384
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ + S+L LF++ G++ V D+ S G+ +V + + +DAA A+ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ P + + + ++ + R G+ + +F+ N D + + F
Sbjct: 89 NFTPL--HGKPIRIMYSNRDPTIRRSGNGN---------IFIKNLDK-AIDHKALHDTFS 136
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FVQ++++E A KA+E + L D+ + V
Sbjct: 137 AFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYV 187
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + G+ FV ++ + A AI L+
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLN 176
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + + ER D ++ +FV N T E ++++ F
Sbjct: 177 GMLLNDKQVYVGPFVRKHERDMAVDKTR-------FTNVFVKNLSE-STLEEELRKIFGE 228
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKL 153
+G + V + R F FV FE E+A +A+E+ + KL
Sbjct: 229 FGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKL 271
>gi|42561847|ref|NP_172386.3| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
gi|4775270|emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana]
gi|23297699|gb|AAN13011.1| putative SF2/ASF splicing modulator Srp30 [Arabidopsis thaliana]
gi|332190279|gb|AEE28400.1| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
Length = 268
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R I+VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGCRLRVEIAHGGR 84
>gi|193716028|ref|XP_001949124.1| PREDICTED: serine-arginine protein 55-like isoform 1 [Acyrthosiphon
pisum]
Length = 309
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 32/183 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG + R+ +LER F K GR++ + MK+G+AFV F+D RDA DA+ L+ +
Sbjct: 7 VFVGGLSHRVRERDLERFFQKIGRVKDIAMKNGYAFVEFDDYRDADDAVYELNGRELNGE 66
Query: 65 RRRLSVEWARGE-------RGRHRDGSKSMANQR----------------PTKT---LFV 98
R+SVE ARG RG R G R PT+T L V
Sbjct: 67 --RVSVERARGTPRGSDVWRGSGRGGDLPPPPPRRPRRDARDDRNDRYGPPTRTNYRLIV 124
Query: 99 INFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
N R +D+K G V + + R+N V+F + + AL+ D ++L
Sbjct: 125 ENLSS-RVSWQDLKDFMRQAGEVTYADAHKQRKNEGVVEFASYSDLKTALDKLDDTELNG 183
Query: 156 RVI 158
R I
Sbjct: 184 RRI 186
>gi|426391711|ref|XP_004062211.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2
[Gorilla gorilla gorilla]
gi|221043204|dbj|BAH13279.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 65 RRRLSVEWARGERGRHRDG 83
R+ VE ARG R R RDG
Sbjct: 62 GERVIVEHARGPR-RDRDG 79
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|328874817|gb|EGG23182.1| hypothetical protein DFA_05314 [Dictyostelium fasciculatum]
Length = 527
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 54/211 (25%)
Query: 5 IFVGNFEYETRQSELERLFSKY-GR--IERVDMKSGFAFVYFEDDRDAAD-AIRGLDNIP 60
+F+GN + +E+ L S Y GR ++++D+KSG+AFV + + D I G+
Sbjct: 181 LFIGNLPLDIGVAEVVNLCSPYCGRSSVDKIDVKSGYAFVIIKSNYSTCDRLIAGIHRTI 240
Query: 61 FGYDRRRLSVEWARGE-RG----------------------------------------- 78
Y + L+V++++ E RG
Sbjct: 241 --YRNKSLTVQYSKSEGRGGSTRDRDGRGDRDRGGRDRDRDRDRGGRDRDRDRDRGGDRD 298
Query: 79 ---RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQF 135
+K +P+ +LF++NF +T + I+ +P+G + + +R+NF FV+F
Sbjct: 299 RSTASTTSTKQNGAMKPSTSLFLVNFGS-KTNQSLIETWCKPFGRINRIDMRKNFCFVEF 357
Query: 136 ETQEEATKALESTDRSKLVD--RVISVEYAL 164
+ E++TKA+E+ + ++VE+A+
Sbjct: 358 DNIEQSTKAMEALHGKDVASDGNKLTVEFAI 388
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S +F+ NF +T QS +E +GRI R+DM+ F FV F++ + A+ L
Sbjct: 316 STSLFLVNFGSKTNQSLIETWCKPFGRINRIDMRKNFCFVEFDNIEQSTKAMEALHGKDV 375
Query: 62 GYDRRRLSVEWA 73
D +L+VE+A
Sbjct: 376 ASDGNKLTVEFA 387
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMK------SGFAFVYFEDDRDAADAIRGLD 57
++V N T +L+ F +YG+I V MK GF FV FE+ DAA A+ L+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 58 NIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G R R+ K A++ + L+V N DP +
Sbjct: 277 GHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSIS 330
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F P+G V ++ R+ FV F T EEAT+A+ + + +
Sbjct: 331 DEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 160 VEYA 163
V A
Sbjct: 390 VAIA 393
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ ++ S+L F + G + V D+ + G+ +V F + +DAA AI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ IP Y + + V ++ HRD S + +F+ N D + + F
Sbjct: 98 NYIPL-YG-KPIRVMYS------HRDPS---VRRSGAGNIFIKNLDE-SIDHKALHDTFS 145
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN++ ++ + + FVQ+ +E A KA+E + L D+ + V
Sbjct: 146 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + G+ FV + ++ A AI L+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + R ER S AN+ ++V N T + D+K F
Sbjct: 186 GMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNVYVKNLAE-STTDDDLKNAFGE 237
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDR 156
YG + + ++ F FV FE ++A +A+ES + K D+
Sbjct: 238 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 105/269 (39%), Gaps = 47/269 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
++V N T EL F +YG I D KS F FV FE+ DAA A+ GL+
Sbjct: 216 VYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 275
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ +GR K A++ P L++ N D +
Sbjct: 276 GKKF--DDK----EWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTIS 329
Query: 107 RERDIKRHFEPYGNVLHVR-------IRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F YG + + I R FV F T EEAT+AL + + +
Sbjct: 330 DEK-LKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLY 388
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPD----------YGRGRS 209
V A + + ER R + + + P +PS A R P YG+G
Sbjct: 389 VALAQRKE-ERRARL----QAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPP 443
Query: 210 PAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
G Y Q+ P P+P +
Sbjct: 444 AMMPPQAGFGYQQQLVPGMRPGGGPMPSF 472
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 27/180 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADA 52
++ ++VG+ + S+L LF++ G++ V D+ + G+ +V F + +DAA A
Sbjct: 33 VTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARA 92
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
+ L+ P + R + + ++ HRD S + T +F+ N D + +
Sbjct: 93 LDVLNFTPL--NNRSIRIMYS------HRDPS---LRKSGTANIFIKNLDK-AIDHKALH 140
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F +G +L +I + + FVQF+ +E A A++ + + D+ + V + L+
Sbjct: 141 DTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLR 200
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + G+ FV F+++ A +AI L+
Sbjct: 125 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLN 184
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ D++ + R ++ R SK+ N ++V N T + ++ +F
Sbjct: 185 GMLIN-DKQVYVGHFLR-KQDRENALSKTKFN-----NVYVKNLSE-STTDEELMINFGE 236
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
YG + I R+ F FV FE ++A KA+E + K D+ V A K SER
Sbjct: 237 YGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQK-KSER 295
Query: 171 D 171
+
Sbjct: 296 E 296
>gi|351704764|gb|EHB07683.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 143
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG+++ D+ + FV ED DAI L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVQECDIIKNYGFVLIEDKTAPEDAIHNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T E ++ E YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNE-ELWAKLEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSK 152
I +++AFV E E+A +A+ D ++
Sbjct: 108 DIVKDYAFVYMERAEDAVEAIRGLDNTE 135
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL +YG + D+ +AFVY E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNEELWAKLEEYGPVIECDIVKDYAFVYMERAEDAVEAIRGLDNTEF 136
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 29/177 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYG----RIERV-DMKS-----GFAFVYFEDDRDAADAIR 54
+F+GN ++ EL ++ S+ G +E + D K GFAFV + + A A++
Sbjct: 208 LFLGNIPSNLKEEELTKIVSEQGPGYQHLELIKDPKDTTRNRGFAFVEYYNKGCAEKAMK 267
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
+ + F D + ++V+WA +R ++ K+++V N P E ++
Sbjct: 268 NMTHSKFQLDDKLITVKWATSQR----------SSSEEVKSVYVRNL-PENVTEEQLREL 316
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F +G V V + +R+F FV + A KA+E T++ L DR +SV A
Sbjct: 317 FGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAMKAIEKTEKYTLEDRELSVSLA 373
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 37/176 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR-----IERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59
+FVGN + +L L ++G I+R K +AFV F A AI L+
Sbjct: 131 VFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLEYAFVTFTTKESAKKAIETLNGF 190
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR------ 113
F + R+S +P LF+ N P +E ++ +
Sbjct: 191 EFKDKKLRVS-------------------ESQPKNRLFLGNI-PSNLKEEELTKIVSEQG 230
Query: 114 ----HFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYA 163
H E + R FAFV++ + A KA+++ SK L D++I+V++A
Sbjct: 231 PGYQHLELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWA 286
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMK------SGFAFVYFEDDRDAADAIRGLD 57
++V N T +L+ F +YG+I V MK GF FV FE+ DAA A+ L+
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 260
Query: 58 NIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G R R+ K A++ + L+V N DP +
Sbjct: 261 GHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSIS 314
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F P+G V ++ R+ FV F T EEAT+A+ + + +
Sbjct: 315 DEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 373
Query: 160 VEYA 163
V A
Sbjct: 374 VAIA 377
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ ++ S+L F + G + V D+ + G+ +V F + +DAA AI+ L
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ IP Y + + V ++ HRD S + +F+ N D + + F
Sbjct: 82 NYIPL-YG-KPIRVMYS------HRDPS---VRRSGAGNIFIKNLDE-SIDHKALHDTFS 129
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN++ ++ + + FVQ+ +E A KA+E + L D+ + V
Sbjct: 130 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 180
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + G+ FV + ++ A AI L+
Sbjct: 110 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 169
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + R ER S AN+ ++V N T + D+K F
Sbjct: 170 GMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNVYVKNLAE-STTDDDLKNAFGE 221
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDR 156
YG + + ++ F FV FE ++A +A+ES + K D+
Sbjct: 222 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 267
>gi|306966179|ref|NP_001182476.1| splicing factor, arginine/serine-rich 1B [Pan troglodytes]
gi|291405734|ref|XP_002719321.1| PREDICTED: splicing factor, arginine/serine-rich 1 [Oryctolagus
cuniculus]
gi|297272653|ref|XP_001103473.2| PREDICTED: splicing factor, arginine/serine-rich 1-like isoform 1
[Macaca mulatta]
gi|348562139|ref|XP_003466868.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 2
[Cavia porcellus]
gi|119614898|gb|EAW94492.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_g [Homo sapiens]
Length = 253
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|84998374|ref|XP_953908.1| splicing factor (SR protein) [Theileria annulata]
gi|65304906|emb|CAI73231.1| splicing factor (SR protein), putative [Theileria annulata]
Length = 341
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
+FVGN + ++ LF K+G I+ VD+K G +AF+ F R A DA+ D
Sbjct: 15 VFVGNLPDRVDERDIHDLFDKFGEIKDVDIKHGKTSNYTSYAFIEFASVRSAEDAVDSRD 74
Query: 58 NIPFGYDRRRLSVEWARGER--------GRHRDGSKSMANQRPTKTLF--VINFDPIRTR 107
+ YDR RL VE+A GE+ R RD +S PT+T + VI+ P R
Sbjct: 75 G--YEYDRYRLRVEFA-GEKKPRRYPSYDRPRDRDRSNRYPPPTRTDYRLVISNLPHGCR 131
Query: 108 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+ +K H G V +V I FV + + + A+ D S+L
Sbjct: 132 WQHLKDHMRKAGPVGYVNIVHGKGFVDYMHKSDMKYAIRKLDGSELT 178
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + E E +LF ++G + +++ GF FV FE +A +A+ GL
Sbjct: 232 IYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLH 291
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ Y+ R+L V A+ + R + KS + + K L++ N D ER
Sbjct: 292 DTE--YNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDER- 348
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ FEP+G + ++ R+ F FV F + +EATKA+ + + + + V A
Sbjct: 349 LRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLA 408
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L F+ +G + + + G+ FV++E A AI+ ++
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVN 198
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + ++ ER D ++ ++V N DP + E + + FE
Sbjct: 199 GMLLNDKKVYVGHHISKKERQSKLDEIRAQ-----FTNIYVKNLDPEVSLE-EFTQLFEQ 252
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+GNV I+ + F FV FE EEA A++ ++ R + V A K +ER
Sbjct: 253 FGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFVSRAQK-KAER 311
Query: 171 DDRY 174
++
Sbjct: 312 EEEL 315
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKS-GFAFVYFEDDRDAADAIRGL 56
IFVG+ E L+ F+ +G I +KS G+AFV F +A AI +
Sbjct: 170 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 229
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ-RPT--KTLFVINFDPIRTRERDIKR 113
+ G R + W+ + R +N +P + L+ F T E IK+
Sbjct: 230 NGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVLYCGGFTNGITDEL-IKK 286
Query: 114 HFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
F P+G + +R+ ++ +AF++F T+E AT A+EST +++ ++ +
Sbjct: 287 TFSPFGTIQDIRVFKDKGYAFIKFTTKEAATHAIESTHNTEINGSIVKCFW 337
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLD 57
R ++VGN + + L LFS+ G ++ + +AFV F + + AA A+ ++
Sbjct: 80 RTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMN 139
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + + V WA G++ + +FV + P + +K F P
Sbjct: 140 KRSF--LEKEMKVNWAT------SPGNQPKLDTSNHHHIFVGDLSP-EIETQTLKEAFAP 190
Query: 118 YGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+G + + RI R+ +AFV F + EA A+ + + L R I ++
Sbjct: 191 FGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWS 244
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 196 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 249
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 250 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVRAMNSLNGTELE 308
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGG 181
+ V A D E+ RY +GG
Sbjct: 309 GSCLEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|145332797|ref|NP_001078264.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
gi|332645021|gb|AEE78542.1| putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
Length = 297
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + R+ E+E +F KYGRI +++K + FV FE RDA DAI+G
Sbjct: 5 FSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKG 64
Query: 56 LDNIPFGYDRRRLSVEWARGERGR 79
D + D RL VE A G RG+
Sbjct: 65 RDG--YNLDGCRLRVELAHGGRGQ 86
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 191 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 244
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 245 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMSNLNGTELE 303
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 304 GSCLEVTLAKPVDKEQYSRYQKAAKGG-GVAEAVAQPPSYVYSCDP 348
>gi|3249109|gb|AAC24092.1| Contains similarity to pre-mRNA splicing factor (SF2), P33
subunit gb|M72709 from Homo sapiens. ESTs gb|T42588 and
gb|R65514 come from this gene [Arabidopsis thaliana]
Length = 237
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R I+VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 66 DG--YDFDGCRLRVEIAHGGR 84
>gi|297849206|ref|XP_002892484.1| hypothetical protein ARALYDRAFT_470995 [Arabidopsis lyrata subsp.
lyrata]
gi|297338326|gb|EFH68743.1| hypothetical protein ARALYDRAFT_470995 [Arabidopsis lyrata subsp.
lyrata]
Length = 265
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
+R I+VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 6 NRTIYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 57 DNIPFGYDRRRLSVEWARGER-------GRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109
D + +D RL VE A G R + S A R + ++ P +
Sbjct: 66 DG--YDFDGCRLRVEIAHGGRRGSSSVDRYSSSYTGSRAPSRRSAYRVLVTGLPPSASWQ 123
Query: 110 DIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R+ V + ++ A+ D ++
Sbjct: 124 DLKDHMRKAGDVCFSEVFRDRGRMSGVVDYSNYDDMKYAIRKLDDTEF 171
>gi|291224888|ref|XP_002732434.1| PREDICTED: spen homolog, transcriptional regulator-like
[Saccoglossus kowalevskii]
Length = 3454
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR +F+GN E T S+L F +G I +D+K +AF+ F + + +++ +
Sbjct: 398 SRTLFIGNLEKNTTYSDLREKFKAFGEIVDIDIKKQGGVPAYAFMQFANIKSVVKSLKKM 457
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D P G +R +L KSMAN L++ T E + R F
Sbjct: 458 DGEPIGKNRFKLGF-------------GKSMANN----CLWIEGIAATVT-ESTLGRFFS 499
Query: 117 PYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
YG V H I R A F+ E A AL T KL + + V++A
Sbjct: 500 RYGAVTHCDIDRKSELALAYFDKVESAQFALNETKGRKLSKKRLQVDFA 548
>gi|440792856|gb|ELR14064.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 239
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 10 FEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRL 68
+ R +LE LF KYG++ R D+K G+ FV +ED RDA DA+R LD + G R+
Sbjct: 28 LALDCRPRDLEDLFYKYGKLTRCDVKRGYGFVEYEDRRDAQDALRDLDGVSVLGT---RI 84
Query: 69 SVEWARGER 77
++EWA+G R
Sbjct: 85 AIEWAKGAR 93
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ R RD++ F YG + ++R + FV++E + +A AL D ++ I++E+A
Sbjct: 30 LDCRPRDLEDLFYKYGKLTRCDVKRGYGFVEYEDRRDAQDALRDLDGVSVLGTRIAIEWA 89
>gi|432889874|ref|XP_004075374.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oryzias
latipes]
Length = 245
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAF+ FED RDA DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDG- 74
Query: 60 PFGYDRRRLSVEW--------------ARGERGRHRDGSKSMANQRPTKTLFVINFDPIR 105
+ YD RL VE+ RGR+ S R ++ V++ P
Sbjct: 75 -YDYDGYRLRVEFPRSGRGSRGGFGGIGGAPRGRYGPPS------RRSEYRVVVSGLPQS 127
Query: 106 TRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 128 GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 176
>gi|356572371|ref|XP_003554342.1| PREDICTED: uncharacterized protein LOC100789337 [Glycine max]
Length = 297
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LER+FS+YGRI VDMK+ FAFV F D RDA DA LD +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDV--E 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG + V ++ +FAFV+F +A A S D + I VE+A
Sbjct: 21 RTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDVEGSRIIVEFA 79
>gi|255936927|ref|XP_002559490.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584110|emb|CAP92139.1| Pc13g10700 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 301
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 123/280 (43%), Gaps = 53/280 (18%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+++GN +S++E FS +G +I + + +GF F+ ++D DA D +P G
Sbjct: 9 LYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDI------VPDG 62
Query: 63 --YDRRRLSVEWARGERGRHRDGSKSMANQ--RPTKTLFVINFDPI-RTRERDIKRHFEP 117
+ RL+V++ARG R + S N RP +T+F + + T +D+K
Sbjct: 63 SEFKGERLTVQFARGPRRKEAFPGPSERNALPRPRRTIFRMQISGLPETSWQDLKDFARQ 122
Query: 118 YG-NVLHVRIRRNF--AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
G +V++ R FV+FET + A+E D+ + V+S ++ ER
Sbjct: 123 SGLDVVYSETGREQGRGFVEFETANDLKTAVEKLDQREFKGSVVSCVADIQSFEER---- 178
Query: 175 DSPRRGGYGRHSPYGRSPSPAY-----RRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHG 229
P R Y SP R P P RR P P RG SP +H
Sbjct: 179 --PMRDPYRSRSP-PRRPYPVTMDEYDRRIPPP---RGYSPR---------------EHY 217
Query: 230 RHRSPVPVYDRRRSPDYGRN----RSPNFGRYRSRSPVRR 265
R RSP+P+ RR P Y R+ R+P R P RR
Sbjct: 218 RERSPIPI---RRDPYYERDGYARRTPPRPRMEDYPPPRR 254
>gi|68075657|ref|XP_679748.1| splicing factor [Plasmodium berghei strain ANKA]
gi|56500569|emb|CAH96908.1| splicing factor, putative [Plasmodium berghei]
Length = 287
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F K+G I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSM----ANQRPTKTLFVINFDPIRTRERDIKRHF 115
FG ++ R+ V + + G++ + M + R + + ++ P+ +D+K H
Sbjct: 70 DFGGNKLRVEVPFNARDNGKYNSRGRGMMGRGSKSRRGRYVVEVSGLPLSGSWQDLKDHL 129
Query: 116 EPYGNVLHVRIRRN 129
G H + +N
Sbjct: 130 REAGECGHADVFKN 143
>gi|388582417|gb|EIM22722.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 725
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 5 IFVGNFEYETRQSELERLFS-----KYGRIE-RVDMKS-------GFAFVYFEDDRDAAD 51
+F+ N + T +++L +FS +Y RI+ + D KS G+ FV F+++ A D
Sbjct: 510 LFIKNIAFSTPEAKLASIFSSLSGYRYARIQTKPDPKSAANRLSMGYGFVGFDNEEHAKD 569
Query: 52 AIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDI 111
A+ + + D L V++A +RG+ + +M + TK L + P ++DI
Sbjct: 570 ALASMQK--YVLDGHSLQVKFA--QRGKDSEPGAAMGQTKTTKML--VKNVPFEASKKDI 623
Query: 112 KRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ F +G + VR+ R FAF+ F T+ +A A ES + L+ R + +++A
Sbjct: 624 RELFGMHGQLKSVRLPRKFDRKTRGFAFLDFVTRRDAEIAYESLKHTHLLGRHLVLQWA- 682
Query: 165 KDDSERDD 172
DD+ +D
Sbjct: 683 -DDAAIND 689
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 26/182 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKS-GFAFVYFEDDRDAADAIRGL 56
IFVG+ E L+ F+ +G I +KS G+AFV F +A AI +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 157
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSK----SMANQR-PTK-TLFVINFDP 103
+ G R + W+ + H + SK + NQ PT T++ F
Sbjct: 158 NGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTNCTVYCGGFTN 215
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVE 161
T E IK+ F P+G + +R+ ++ +AF++F T+E AT A+EST +++ ++
Sbjct: 216 GITDEL-IKKTFSPFGTIQDIRVFKDKGYAFIKFTTKEAATHAIESTHNTEINGSIVKCF 274
Query: 162 YA 163
+
Sbjct: 275 WG 276
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLD 57
R ++VGN + + L LFS+ G ++ + +AFV F + + AA A+ ++
Sbjct: 8 RTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMN 67
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + + V WA G++ + +FV + P + +K F P
Sbjct: 68 KRSF--LDKEMKVNWAT------SPGNQPKLDTSNHHHIFVGDLSP-EIETQTLKEAFAP 118
Query: 118 YGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+G + + RI R+ +AFV F + EA A+ + + L R I ++
Sbjct: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMNGQWLGSRSIRTNWS 172
>gi|241574285|ref|XP_002403076.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
gi|215502149|gb|EEC11643.1| alternative splicing factor SRp55/B52/SRp75, putative [Ixodes
scapularis]
Length = 268
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +F+G+ + R+ +L++ F YGR+ + +K+GF FV F+D RDA DAI L+
Sbjct: 1 MTTRVFIGHLSCQVREKDLDKFFKGYGRVGDIHLKNGFGFVEFDDHRDADDAISDLNGKE 60
Query: 61 FGYDRRRLSVEWARGER----GRHRDGSKSMAN-----------------QRPTKTLFVI 99
+ R+SVE A G R GR + QR L V
Sbjct: 61 LLGE--RVSVELAYGSRRGPGGRIVPPRPDWRSPPPRRPFAPRDTRFGPPQRTEYQLIVE 118
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDR 156
N +D+K + G V + +IR N V+F + A+ D + L R
Sbjct: 119 NLSS-HVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLSGR 177
Query: 157 VI 158
I
Sbjct: 178 RI 179
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|388495254|gb|AFK35693.1| unknown [Lotus japonicus]
Length = 300
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LER+FS+YGR+ VDMK +AFV F D RDA DA LD D
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDG--RDVD 70
Query: 65 RRRLSVEWARG 75
RL VE+A+G
Sbjct: 71 GSRLIVEFAKG 81
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++R++AFV+F +A A + D + + VE+A
Sbjct: 21 RTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDVDGSRLIVEFA 79
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY RGG + + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAARGGSAAEA--AQQPSYVYSCDP 351
>gi|440804043|gb|ELR24926.1| zinc knuckle domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 22 LFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77
+F KYGRI R D+K GF FV +ED RDA DA+R LD +R++VEWA+GER
Sbjct: 1 MFYKYGRIIRCDVKVGFGFVEYEDRRDAEDAVRDLDGA--HLMGKRIAVEWAKGER 54
>gi|79582138|ref|NP_683288.2| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
gi|4775271|emb|CAB42558.1| SF2/ASF-like splicing modulator Srp30, variant 1 [Arabidopsis
thaliana]
gi|332190280|gb|AEE28401.1| splicing factor, arginine/serine-rich 1/9 [Arabidopsis thaliana]
Length = 256
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRG 55
+R I+VGN + R+ E+E LF KYG I +D+K G+AFV FED RDA DAI G
Sbjct: 5 WNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 56 LDNIPFGYDRRRLSVEWARGER 77
D + +D RL VE A G R
Sbjct: 65 RDG--YDFDGCRLRVEIAHGGR 84
>gi|403342322|gb|EJY70479.1| hypothetical protein OXYTRI_08772 [Oxytricha trifallax]
Length = 471
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 21/163 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRG 55
S IFVGN + T L+ F G I V + G+AF+ F +A A++
Sbjct: 185 STEIFVGNIPFTTDAETLKAKFEAIGTIVNVSIPMSGKRMKGYAFIKFSTRAEAEKAVKK 244
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----QRPTKTLFVINFDPIRTRERD 110
L++ F +D R+L V ++ G+ R+ N Q + T+F+ N T E++
Sbjct: 245 LND--FDFDGRQLKVNFSSGKEAEKREKKTGDENGEKKEQTKSSTVFIGNL-SYSTNEQN 301
Query: 111 IKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALE 146
I++ + G + VRI + FA V+FE E A KA++
Sbjct: 302 IRKLLKDCGEIKGVRIALGEDGKMKGFAHVEFEDAESAEKAMK 344
>gi|221053983|ref|XP_002261739.1| pre-mRNA splicing factor [Plasmodium knowlesi strain H]
gi|193808199|emb|CAQ38902.1| pre-mRNA splicing factor, putative [Plasmodium knowlesi strain H]
Length = 495
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADA 52
+S I+VGN + E+ LFSKYGRI+ +D+K FAFV++ D RDA A
Sbjct: 11 ISSCIYVGNLPGNVVEDEVYDLFSKYGRIKYIDVKKPRAPGVPYSFAFVHYFDSRDAEYA 70
Query: 53 IRGLDNIPFGYDRRRLSVEWARGER--GRHRDGSKSMANQRPTKTLFVINFDPIRTRERD 110
I D + YD RL VE++ R G++R+ + T+ +I+ P + +
Sbjct: 71 IDRRD--GYKYDGVRLRVEYSGENRSYGKYRNKEEGTGPPVRTEHRIIISNLPESCKWQH 128
Query: 111 IKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRS--KLVDRVISVE 161
+K G+V + + R V+F ++++ A+E D S K+ D V +++
Sbjct: 129 LKDVMRQCGDVGYANVERGKGVVEFISRDDMLYAIEKFDGSEFKVYDDVTNIK 181
>gi|384494440|gb|EIE84931.1| hypothetical protein RO3G_09641 [Rhizopus delemar RA 99-880]
Length = 252
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +++G + + ++ERLF YG I +++K+GF FV F D+RDA D +
Sbjct: 1 MSTRVYIGRLARDASKRDIERLFKNYGDIREINLKTGFGFVEFADERDAKDVVYDFHGKS 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
F + RL VE A+G R RH D + N R L V N P T +D+K
Sbjct: 61 FLGE--RLIVEIAKGTR-RH-DERRPRGNDRSRSHYRLIVENIAP-GTNWQDLKDMMRKA 115
Query: 119 GNVLHVRIRRN---FAFVQFETQEEATKALESTDRSKLVDRVIS 159
G V I R+ V+F +++ AL+ KL DR ++
Sbjct: 116 GEVTFADISRDRPSEGIVEFHVRDDMEYALK-----KLNDRELN 154
>gi|359322752|ref|XP_003639909.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2
[Canis lupus familiaris]
Length = 135
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 65 RRRLSVEWARGERGRHRDG 83
R+ VE ARG R R RDG
Sbjct: 62 GERVIVEHARGPR-RDRDG 79
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L + ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>gi|149053805|gb|EDM05622.1| rCG34610, isoform CRA_a [Rattus norvegicus]
Length = 214
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+ YD RL VE+ R R P +D+K H G
Sbjct: 77 -YDYDGYRLRVEFPRSGR------------------------LPPSGSWQDLKDHMREAG 111
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + + R+ V+F +E+ T A+ D +K
Sbjct: 112 DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 146
>gi|301755236|ref|XP_002913467.1| PREDICTED: RNA-binding protein 28-like [Ailuropoda melanoleuca]
gi|281348807|gb|EFB24391.1| hypothetical protein PANDA_001275 [Ailuropoda melanoleuca]
Length = 751
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 49/229 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPSSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARG-------ERGRHRDGSKSMANQRPT-------KTLFVINFD 102
++ +++V A+ E+G + + +P K +I
Sbjct: 66 TT----FEGCKITVTIAKKKQRNKSKEKGENENSEPPKKELKPKKPKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+S + ++
Sbjct: 122 SFKCSEDDLKTVFAQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
R ++V++A+ D ++ + S +P +RP P +
Sbjct: 182 RTVAVDWAVAKDKYKNTQSAS----------------APGEEKRPEPKH 214
>gi|358253029|dbj|GAA51421.1| Msx2-interacting protein, partial [Clonorchis sinensis]
Length = 3067
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 29/172 (16%)
Query: 2 SRPIFVGNFEYET-RQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAI 53
++ +FVGN T Q EL+ F YG I +D+K + +AFV F D + A+
Sbjct: 241 TKTLFVGNLCSSTITQEELKNTFRGYGEIIEIDIKIQASQPGTSYAFVQFNDIKSVVRAL 300
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
D+I G +L +PT +++ N P+ E + R
Sbjct: 301 SDQDSIRVGNKVVKL-----------------GFGKSQPTNVVWLDNLPPV--TEAFLAR 341
Query: 114 HFEPYGNVLHVRIRRNF--AFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F YG++ HV + R A + F+T E A +AL T +V R + V++A
Sbjct: 342 QFGRYGHLTHVVLDRKSSRALLYFDTVEMAQRALNETRNRAIVGRRVQVDFA 393
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 23 FSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGER 77
F K+G+I V ++ + + F+ DAA A+ + FG +SV G
Sbjct: 164 FKKHGKITSVIIRGQAEERYCILTFKRSEDAARALEASRGKVFFGTS---ISVSLHDGIE 220
Query: 78 GRHRDGS---KSMANQRP--TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----- 127
D ++ P TKTLFV N + ++K F YG ++ + I+
Sbjct: 221 SEDPDLCPPEHALDEYHPKATKTLFVGNLCSSTITQEELKNTFRGYGEIIEIDIKIQASQ 280
Query: 128 --RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
++AFVQF + +AL D ++ ++V+ + +
Sbjct: 281 PGTSYAFVQFNDIKSVVRALSDQDSIRVGNKVVKLGF 317
>gi|70947849|ref|XP_743501.1| splicing factor [Plasmodium chabaudi chabaudi]
gi|56523027|emb|CAH75823.1| splicing factor, putative [Plasmodium chabaudi chabaudi]
Length = 283
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F K+G I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVTSRDVENEFRKFGTILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSM----ANQRPTKTLFVINFDPIRTRERDIKRHF 115
FG ++ R+ V + + G++ + M + R + + ++ P+ +D+K H
Sbjct: 70 DFGGNKLRVEVPFNARDNGKYSSRGRGMMGRGSKSRRGRYVVEVSGLPLSGSWQDLKDHL 129
Query: 116 EPYGNVLHVRIRRN 129
G H + +N
Sbjct: 130 REAGECGHADVFKN 143
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMKSG------FAFVYFEDDRDAADAIRGLD 57
++V N T + +L++ F +YG I V M+ G F FV FE+ DAA A+ L+
Sbjct: 205 VYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALN 264
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ + R K A++ L++ N D
Sbjct: 265 GKKF--DDK----EWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIG 318
Query: 107 RERDIKRHFEPYGNVLHVR-------IRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
+R +K+ F P+G + + I R FV F T EEA+KAL + +V + +
Sbjct: 319 DDR-LKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLY 377
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 207
V A + + R + + + + P +PS A R P G G
Sbjct: 378 VALAQRKEDRR-----ARLQAQFSQIRPVAMAPSVAPRMPMYPPGGPG 420
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADA 52
++ ++VG+ E S L LF++ G++ V D+ + G+ +V + +DAA A
Sbjct: 22 VTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARA 81
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
+ L+ P R+ HRD S + + +F+ N D + +
Sbjct: 82 LDMLNFTPLNGSPIRIMYS--------HRDPS---VRKSGSGNIFIKNLDK-GIDHKALH 129
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F +GN+L ++ + + FVQF+ +E A KA+E + L D+ + V L+
Sbjct: 130 DTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLR 189
Query: 166 DDSERDDRYDSPR 178
ER+ D R
Sbjct: 190 KQ-ERESAIDKTR 201
>gi|260833612|ref|XP_002611806.1| hypothetical protein BRAFLDRAFT_141671 [Branchiostoma floridae]
gi|229297178|gb|EEN67815.1| hypothetical protein BRAFLDRAFT_141671 [Branchiostoma floridae]
Length = 175
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
I+VGN E RQ +++ +F KYG+I VD+K G FAFV FED RDA DA+ G D
Sbjct: 8 IYVGNLPPEVRQEDIKDVFYKYGKIIHVDLKIGRGPPFAFVEFEDKRDADDAVYGRDG-- 65
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMAN-----------QRPTKTLFVINFDPIRTRER 109
+ D RL VE+ RG S R ++ +++ P +
Sbjct: 66 YTLDGYRLRVEFPRGSARGGYGRSGGGGGGGGGARRGGAPSRRSEYRVLVSGLPPTGSWQ 125
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + R+ V+F ++ A++ D SK
Sbjct: 126 DLKDHMREAGDVCFADVFRDGTGVVEFLRYDDMKYAVKHLDDSKF 170
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRS 151
++V N P R+ DIK F YG ++HV ++ FAFV+FE + +A A+ D
Sbjct: 8 IYVGNLPP-EVRQEDIKDVFYKYGKIIHVDLKIGRGPPFAFVEFEDKRDADDAVYGRDGY 66
Query: 152 KLVDRVISVEY 162
L + VE+
Sbjct: 67 TLDGYRLRVEF 77
>gi|47220462|emb|CAG03242.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1292
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YG++ +D+K+G+ FV FED+RDA DA+ L+ +
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLMEIDLKNGYGFVEFEDNRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRD 82
R+ VE ARG R R RD
Sbjct: 64 --RVIVEHARGPR-RDRD 78
>gi|197099026|ref|NP_001126337.1| serine/arginine-rich splicing factor 1 [Pongo abelii]
gi|68724975|sp|Q5R7H2.3|SRSF1_PONAB RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|55731147|emb|CAH92288.1| hypothetical protein [Pongo abelii]
Length = 248
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|5902076|ref|NP_008855.1| serine/arginine-rich splicing factor 1 isoform 1 [Homo sapiens]
gi|34328400|ref|NP_775550.2| serine/arginine-rich splicing factor 1 isoform 1 [Mus musculus]
gi|83921643|ref|NP_001033096.1| serine/arginine-rich splicing factor 1 [Sus scrofa]
gi|115497078|ref|NP_001069862.1| serine/arginine-rich splicing factor 1 [Bos taurus]
gi|157818019|ref|NP_001103022.1| splicing factor, arginine/serine-rich 1B [Rattus norvegicus]
gi|306966181|ref|NP_001182477.1| splicing factor, arginine/serine-rich 1 [Equus caballus]
gi|306966183|ref|NP_001182478.1| splicing factor, arginine/serine-rich 1 [Macaca mulatta]
gi|73966540|ref|XP_866729.1| PREDICTED: serine/arginine-rich splicing factor 1 isoform 2 [Canis
lupus familiaris]
gi|296202380|ref|XP_002748436.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 1
[Callithrix jacchus]
gi|332246407|ref|XP_003272345.1| PREDICTED: serine/arginine-rich splicing factor 1 [Nomascus
leucogenys]
gi|344285799|ref|XP_003414647.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Loxodonta
africana]
gi|397493084|ref|XP_003817443.1| PREDICTED: serine/arginine-rich splicing factor 1 [Pan paniscus]
gi|403279712|ref|XP_003931390.1| PREDICTED: serine/arginine-rich splicing factor 1 [Saimiri
boliviensis boliviensis]
gi|410980663|ref|XP_003996696.1| PREDICTED: serine/arginine-rich splicing factor 1 [Felis catus]
gi|426347344|ref|XP_004041313.1| PREDICTED: serine/arginine-rich splicing factor 1 [Gorilla gorilla
gorilla]
gi|730773|sp|Q07955.2|SRSF1_HUMAN RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Alternative-splicing factor 1; Short=ASF-1;
AltName: Full=Splicing factor, arginine/serine-rich 1;
AltName: Full=pre-mRNA-splicing factor SF2, P33 subunit
gi|68725069|sp|Q6PDM2.3|SRSF1_MOUSE RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=ASF/SF2; AltName: Full=Pre-mRNA-splicing factor
SRp30a; AltName: Full=Splicing factor,
arginine/serine-rich 1
gi|114152157|sp|Q3YLA6.3|SRSF1_PIG RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|122145605|sp|Q0VCY7.1|SRSF1_BOVIN RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|179075|gb|AAA35565.1| alternative [Homo sapiens]
gi|338047|gb|AAA03476.1| SF2p33 [Homo sapiens]
gi|16307434|gb|AAH10264.1| Splicing factor, arginine/serine-rich 1 [Homo sapiens]
gi|21104372|dbj|BAB93456.1| OK/SW-cl.3 [Homo sapiens]
gi|28386236|gb|AAH46773.1| Sfrs1 protein [Mus musculus]
gi|35192949|gb|AAH58627.1| Splicing factor, arginine/serine-rich 1 (ASF/SF2) [Mus musculus]
gi|61364743|gb|AAX42596.1| splicing factor arginine/serine-rich 1 [synthetic construct]
gi|73810229|gb|AAZ86088.1| splicing factor arginine/serine-rich 1 [Sus scrofa]
gi|73810231|gb|AAZ86089.1| splicing factor arginine/serine-rich 1 [Sus scrofa]
gi|74151692|dbj|BAE29641.1| unnamed protein product [Mus musculus]
gi|111306978|gb|AAI19931.1| Splicing factor, arginine/serine-rich 1 [Bos taurus]
gi|119614891|gb|EAW94485.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_a [Homo sapiens]
gi|119614892|gb|EAW94486.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_a [Homo sapiens]
gi|149053807|gb|EDM05624.1| rCG34610, isoform CRA_c [Rattus norvegicus]
gi|189053478|dbj|BAG35644.1| unnamed protein product [Homo sapiens]
gi|296477057|tpg|DAA19172.1| TPA: splicing factor, arginine/serine-rich 1 [Bos taurus]
gi|336088097|dbj|BAK39908.1| splicing factor, arginine/serine-rich 1, transcript variant 1
[Cricetulus griseus]
gi|344243483|gb|EGV99586.1| Splicing factor, arginine/serine-rich 1 [Cricetulus griseus]
gi|380784743|gb|AFE64247.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|383420721|gb|AFH33574.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|384941916|gb|AFI34563.1| serine/arginine-rich splicing factor 1 isoform 1 [Macaca mulatta]
gi|410224700|gb|JAA09569.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410263644|gb|JAA19788.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410308964|gb|JAA33082.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351427|gb|JAA42317.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351431|gb|JAA42319.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|431890828|gb|ELK01707.1| Splicing factor, arginine/serine-rich 1 [Pteropus alecto]
Length = 248
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|448878395|gb|AGE46160.1| arginine/serine-rich splicing factor RS27 transcript II
[Physcomitrella patens subsp. patens]
Length = 100
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAF 40
RP++ GNFEY+ RQSE+ERLF +YGR+ERVDMK+G +
Sbjct: 6 RPVYCGNFEYDARQSEIERLFKEYGRVERVDMKTGMSM 43
>gi|356574963|ref|XP_003555612.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Glycine max]
Length = 264
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R E+E LF KYG I +D+K G+AFV FED RDA DAI+
Sbjct: 6 SRTIYVGNLPGDVRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIQYR 65
Query: 57 DNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 66 DG--YNFDGFRLRVELAHGGRG 85
>gi|60811245|gb|AAX36166.1| splicing factor arginine/serine-rich 1 [synthetic construct]
Length = 249
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|242052053|ref|XP_002455172.1| hypothetical protein SORBIDRAFT_03g005500 [Sorghum bicolor]
gi|241927147|gb|EES00292.1| hypothetical protein SORBIDRAFT_03g005500 [Sorghum bicolor]
gi|448878302|gb|AGE46114.1| arginine/serine-rich splicing factor RS2Z34 transcript I [Sorghum
bicolor]
Length = 296
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LF +YGR+ VDMK FAFV F D RDA DA LD+ F D
Sbjct: 26 LYVGRVSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDPRDADDARYHLDDREF--D 83
Query: 65 RRRLSVEWARG 75
RL VE+A+G
Sbjct: 84 GSRLIVEFAKG 94
>gi|358058378|dbj|GAA95897.1| hypothetical protein E5Q_02555 [Mixia osmundae IAM 14324]
Length = 680
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 43/202 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKS-------------GFAFVYFEDDRDA 49
++V N ++ L+ +FS R RV M+ G+ FV F+ + +A
Sbjct: 467 LYVKNLSFQVTSERLQAMFSDLAGYRFARVQMRKTDVSGVAKTAASLGYGFVGFDTEGNA 526
Query: 50 ADAI-----RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQ----RPTKTLFVIN 100
A+ + L+ P AR RG+ G+ A + RPT TL + N
Sbjct: 527 QAAMTRRQGQLLEGRPL---------LLARARRGQDAKGAGGEAQESKAGRPTSTLVIKN 577
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKL 153
P +++++ F+ YGN+ +R+ R FAFV+F + EA +A ++ ++ L
Sbjct: 578 V-PFEVSKKELQALFKSYGNIKSLRMPRKADRHTRGFAFVEFRSTAEAKEAKQALSQTHL 636
Query: 154 VDRVISVEYALKDD--SERDDR 173
+ R + +EY D S RDD+
Sbjct: 637 LGRHLVIEYGQADQGASLRDDK 658
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKAL 145
T LF+ N R D++ F +G V HV + RR A+V FET +EA +A
Sbjct: 185 TNRLFLRNL-AFTVRSSDLQTTFAQHGRVSHVHLVDEDKTERRGLAYVTFETAKEAEQAR 243
Query: 146 ESTDRSKLVDRVISVEYALKDDSERD 171
+ D + L R++ V A E D
Sbjct: 244 SALDGTILHGRLLHVMLAAARPGEAD 269
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 196 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 249
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ S + ++L
Sbjct: 250 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVRAMNSLNGTELE 308
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGG 181
+ V A D E+ RY +GG
Sbjct: 309 GSCLEVTLAKPVDKEQYSRYQKAAKGG 335
>gi|148669917|gb|EDL01864.1| splicing factor, arginine/serine-rich 1 (ASF/SF2), isoform CRA_b
[Mus musculus]
Length = 193
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|159479816|ref|XP_001697982.1| SR protein factor [Chlamydomonas reinhardtii]
gi|158273781|gb|EDO99567.1| SR protein factor [Chlamydomonas reinhardtii]
Length = 320
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
IFVGN Y+ R+ EL+ +F K+GRI +D+K GFAFV FED R A +A R +N
Sbjct: 37 IFVGNLPYDVREKELDEIFYKFGRIRMIDIKKPARPPGFAFVEFEDPRSAEEAARRRNNY 96
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQ------RPTKT-----LFVINFDPIRTRE 108
F R+ VE ARG G + A Q RP + L+V N P
Sbjct: 97 EFA--GMRMRVEIARG-------GEAAGAQQPLRIGYRPIRNTMGFRLYVKNL-PRSASW 146
Query: 109 RDIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVD 155
+D+K L+ + ++ V+FE++E+ + D ++ +
Sbjct: 147 QDLKDFVRRVCKPLYTEVFKDNRDNVVGVVEFESKEDMKATVRKLDDTEFAN 198
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A +A+ + + ++L
Sbjct: 249 YVRNLM-IETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFASREDAVQAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGG-GVAEAAVQPPSYVYSCDP 352
>gi|344270941|ref|XP_003407300.1| PREDICTED: RNA-binding protein 28 isoform 1 [Loxodonta africana]
Length = 755
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 33/215 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYF---EDDRDAADAI 53
+FVG R +LE LFS+ G +++ + + GF +V F ED + A + I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALNEI 65
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL-------FVINFDPIRT 106
+ + + E+G++ + +P K +I +
Sbjct: 66 TTFEGCKINVTVAKRKLRHKSKEKGKNENSESPKKVPKPKKAKMADKKARLIIRNLSFKC 125
Query: 107 RERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E D+K F +G VL V I R FAFVQF+ EA KAL+ + ++ R ++
Sbjct: 126 SEDDLKTIFAQFGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVA 185
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSP 194
V++A+ D +D + S S G+SP P
Sbjct: 186 VDWAVAKDKYKDTQSASA--------SGEGKSPEP 212
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 110 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 169
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 170 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 226
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 227 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 286
Query: 164 LKDDSER 170
+ D R
Sbjct: 287 QRKDVRR 293
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 76
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 77 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 130
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 131 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 173
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|46249455|gb|AAH68622.1| LOC414671 protein, partial [Xenopus laevis]
Length = 323
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 33/178 (18%)
Query: 19 LERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70
LE++FS+ G + E+ K GF +V F DA A++ + Y+ R++ V
Sbjct: 20 LEQIFSESGPVRQSFVVREKGAEKCRGFGYVTFSMVEDAQRAMKEIKE----YEGRKIEV 75
Query: 71 EWARGERGRHRDGSKSMANQRPTKTL--------------FVINFDPIRTRERDIKRHFE 116
+ A+ ++ +K + TK + +I + E D+K+HF
Sbjct: 76 QVAKKKQVEKNKKTKCEESSETTKEVKKPKDARGAYKKARLIIRNLSFQCSEDDLKKHFS 135
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+G+VL V I R FAFVQ + EA+KAL+ T+ + R ++V++A+ D
Sbjct: 136 NFGSVLEVNIPKKPDGKMRGFAFVQLKNMLEASKALKGTNMKSIKGRTVAVDWAVAKD 193
>gi|442749577|gb|JAA66948.1| Putative alternative splicing factor srp55/b52/srp75 rrm
superfamily [Ixodes ricinus]
Length = 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+ +F+G+ + R+ +L++ F YGR+ + +K+GF FV F+D RDA DAI L+
Sbjct: 1 MTTRVFIGHLSCQVREKDLDKFFKGYGRVGDIHLKNGFGFVEFDDHRDADDAISDLNGKE 60
Query: 61 FGYDRRRLSVEWARGER----GRHRDGSKSMAN-----------------QRPTKTLFVI 99
+ R+SVE A G R GR + QR L V
Sbjct: 61 LLGE--RVSVELAYGSRRGPGGRIVPPRPDWRSPPPRRPFAPRDTRFGPPQRTEYQLIVE 118
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDR 156
N +D+K + G V + +IR N V+F + A+ D + L R
Sbjct: 119 NLSS-HVSWQDLKDYMRQAGEVTYADAHKIRPNEGVVEFANYSDMKNAISKLDNTDLSGR 177
Query: 157 VI 158
I
Sbjct: 178 RI 179
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|363807264|ref|NP_001242616.1| uncharacterized protein LOC100813237 [Glycine max]
gi|255647309|gb|ACU24121.1| unknown [Glycine max]
Length = 299
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LER+FS+YGR+ VDMK+ FAFV F D RDA DA LD +
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDV--E 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++ +FAFV+F +A A + D + I VE+A
Sbjct: 21 RTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDVEGSRIIVEFA 79
>gi|440632502|gb|ELR02421.1| hypothetical protein GMDG_05479 [Geomyces destructans 20631-21]
Length = 294
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI--ERV-----DMKSGFAFVYFEDDRDAADAIR 54
+ ++VGN +E +LER F+ YG I R+ + GF ++ F D A +AI
Sbjct: 102 TNSVYVGNLLFEVTPQDLEREFAPYGEIVTSRIAQDPRGLSKGFGYIEFRDIESARNAIE 161
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
+ F + RRL V + R S + + P+KTLF+ N + D+ +
Sbjct: 162 QRNQTIF--EGRRLIVNYMAKTR------SNAKSKNPPSKTLFIGNL-AFEMTDADLNKL 212
Query: 115 FEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
F NV+ VR+ R FA F E A KA E + ++ +R + ++Y+L
Sbjct: 213 FRDIVNVIDVRVAIDRRTGQPRGFAHADFTDVESAVKAAEILEGKEVYNRSLRLDYSL 270
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 143
+PT +++V N +D++R F PYG ++ RI + F +++F E A
Sbjct: 100 QPTNSVYVGNL-LFEVTPQDLEREFAPYGEIVTSRIAQDPRGLSKGFGYIEFRDIESARN 158
Query: 144 ALESTDRSKLVDRVISVEYALK 165
A+E +++ R + V Y K
Sbjct: 159 AIEQRNQTIFEGRRLIVNYMAK 180
>gi|255568494|ref|XP_002525221.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223535518|gb|EEF37187.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 305
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LE LFSKYGR+ VDMK +AFV F D RDA DA LD D
Sbjct: 13 LYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKDL--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSK 152
T + RTR RD++ F YG V V ++R++AFV+F +A A D
Sbjct: 9 ANTRLYVGHLASRTRSRDLEYLFSKYGRVRDVDMKRDYAFVEFSDPRDADDARYHLDGKD 68
Query: 153 LVDRVISVEYA 163
L I VE+A
Sbjct: 69 LDGSRIIVEFA 79
>gi|242024531|ref|XP_002432681.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
gi|212518151|gb|EEB19943.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
Length = 295
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
R +FVG +ET EL FS++G IE V +K+ GFAF+ F+D +
Sbjct: 33 RKLFVGRLSWETTDKELREHFSQFGEIESVSVKTDPASGRSRGFAFIVFKDVESIEKVMA 92
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
D+I + +++ + A+ G+ +FV D + T E DI+
Sbjct: 93 AGDHI---INCKKIDPKKAKARHGK----------------IFVGGLD-VETSEEDIRNF 132
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F +G +L V + ++NF F+ FE+ E+ T L + + + + V+ A
Sbjct: 133 FGQFGTILEVELPFDKQKNQQKNFCFITFES-EQVTNDLLKQPKQTINGKEVDVKKA 188
>gi|195152782|ref|XP_002017315.1| GL22249 [Drosophila persimilis]
gi|198454070|ref|XP_001359460.2| GA20008 [Drosophila pseudoobscura pseudoobscura]
gi|194112372|gb|EDW34415.1| GL22249 [Drosophila persimilis]
gi|198132637|gb|EAL28606.2| GA20008 [Drosophila pseudoobscura pseudoobscura]
Length = 263
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RGRHRDGSKSMAN----------QRPTKTLFVINFDPIR 105
+ YD RL VE+ RG RG D + +R + V P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGNRNDRNNGRDGGRMGGRGPPAKRSQYRVMVTGLPPSG 126
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKLVDRVISVEYA- 163
+ + D+K H G+V ++ + V+F E+ A++ D S+ V Y
Sbjct: 127 SWQ-DLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIR 185
Query: 164 LKDDSERDDR 173
+++DS +DR
Sbjct: 186 VREDSGENDR 195
>gi|357132692|ref|XP_003567963.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like
[Brachypodium distachyon]
Length = 319
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LF +YGR+ VDMK FAFV F D RDA DA LD F D
Sbjct: 16 LYVGRLSSRTRSRDLEDLFGRYGRVRYVDMKHEFAFVEFSDPRDADDARYNLDGRDF--D 73
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 74 GSRMIVEFAKG 84
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 26/179 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKS-GFAFVYFEDDRDAADAIRGL 56
IFVG+ E L+ F+ +G I MKS G+AFV F +A AI +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAM 157
Query: 57 DNIPFGYDRRRLSVEWARGERGR-------HRDGSK----SMANQR-PTK-TLFVINFDP 103
+ G R + W+ + H + SK + NQ PT T++ F
Sbjct: 158 NGQWLG--SRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVYNQSSPTNCTVYCGGFTN 215
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISV 160
T E I + F P+G + +R+ ++ +AF++F T+E AT A+EST +++ ++
Sbjct: 216 GITDEL-INKTFSPFGTIQDIRVFKDKGYAFIKFTTKEAATHAIESTHNTEINGSIVKC 273
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 22/174 (12%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLD 57
R ++VGN + + L LFS+ G ++ + +AFV F + + AA A+ ++
Sbjct: 8 RTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGNDPYAFVEFTNHQCAATALAAMN 67
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + + V WA G++ + +FV + P + +K F P
Sbjct: 68 KRSF--LNKEMKVNWAT------SPGNQPKLDTSNHHHIFVGDLSP-EIETQTLKEAFAP 118
Query: 118 YGNVLHVRIRRN--------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+G + + RI R+ +AFV F + EA A+ + + L R I ++
Sbjct: 119 FGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMNGQWLGSRSIRTNWS 172
>gi|356556525|ref|XP_003546575.1| PREDICTED: protein MEI2-like 2-like [Glycine max]
Length = 862
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 193 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 252
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 253 KPL--RRRKLDIHFSIPK----DNPSDKDINQ---GTLVVFNLDPSVSNE-DLRQIFGAY 302
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE----------YALK 165
G V +R +R+ F++F A AL+S +RS + + I +E L+
Sbjct: 303 GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQ 362
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
+ E D D R Y SP SP + + SP
Sbjct: 363 LNQELDQ--DESRSFRYQVGSPVANSPPGNWLQFNSP 397
>gi|402587972|gb|EJW81906.1| splicing factor [Wuchereria bancrofti]
Length = 228
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 96/220 (43%), Gaps = 26/220 (11%)
Query: 1 MSRP--IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIR 54
MSR I+VGN R ++E +FSKYGR+ VD+K FAFV FED RDA DA+R
Sbjct: 1 MSRESRIYVGNLPTTVRAKDVEDIFSKYGRVLYVDLKDRRQPYFAFVEFEDARDAEDAVR 60
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHR-----DGSKSMA------------NQRPTKTLF 97
G D + Y+ RL VE+ RG R D ++++ R
Sbjct: 61 GRDG--YDYEGYRLRVEFPRGLGPRGPGGRPYDSGRNLSVSRSACGGGSSSGSRRASYRV 118
Query: 98 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDR 156
+++ P +D+K H G+V + + R+ V++ E+ AL D +K
Sbjct: 119 IVSGLPASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKFKSH 178
Query: 157 VISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 196
Y + + R S R GR S SP+Y
Sbjct: 179 EGETSYIRVKEDNGESRAHSRSRSPVGRASRGSPQYSPSY 218
>gi|291224545|ref|XP_002732262.1| PREDICTED: splicing factor, arginine/serine-rich 4-like
[Saccoglossus kowalevskii]
Length = 274
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M +++G Y+TR+ ++ER F YGR+ +++K+GF FV FED RD+ DA+ L+
Sbjct: 26 MGTRVYIGRLSYQTRERDVERFFRGYGRLREINLKNGFGFVEFEDPRDSDDAVYELNGKE 85
Query: 61 FGYDRRRLSVEWARG 75
+ R+++E ARG
Sbjct: 86 LCGE--RVTIEHARG 98
>gi|449522400|ref|XP_004168214.1| PREDICTED: pre-mRNA-splicing factor SF2-like, partial [Cucumis
sativus]
Length = 106
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRG 55
SR I+VGN + ++ E+E LF KYGRI +++K + FV FE RDA DAIR
Sbjct: 5 FSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRA 64
Query: 56 LDNIPFGYDRRRLSVEWARGERG 78
D + +D RL VE A G RG
Sbjct: 65 RDG--YNFDGCRLRVELAHGGRG 85
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E E LF+ +G+I + ++ GF FV FE+ AA A+ L+
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 310 DKEI--NGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEK- 366
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 164 LKDDSER 170
+ D R
Sbjct: 427 QRKDVRR 433
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V + D AI
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P + R + W++ + R G + +F+ N P + +
Sbjct: 126 EELNYTPV--EGRPCRIMWSQRDPSARRSGDGN---------IFIKNLHP-AIDNKALHD 173
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L V++ + F FV +ET+E A A+ES + L DR + V
Sbjct: 174 TFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV 227
>gi|74198338|dbj|BAB31653.3| unnamed protein product [Mus musculus]
Length = 243
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>gi|378755700|gb|EHY65726.1| hypothetical protein NERG_01333 [Nematocida sp. 1 ERTm2]
Length = 316
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIR 54
R IF+ + + EL+ LF ++G I V + GF +V FE ++A + R
Sbjct: 91 RTIFIKGLNFSATEDELKELFGQFGEIVEVRIPRSRDGPGGKGFGYVEFES-KEACEKSR 149
Query: 55 GLDNIPFGYDRRRLSVEWAR-GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ Y+ R + V+ AR G++G + N+ T+F+ N P D+
Sbjct: 150 SLNGTD--YNGRTIVVDMARSGQKGGAAGTEGRVFNKTDDNTVFLGNI-PFDVDHDDLLA 206
Query: 114 HFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
H + Y V +RI + FAF ET EEA K + S +DR I +
Sbjct: 207 HLKTYAEVTQIRIPEDRETGRPKGFAFASCETTEEARKLINS--NITYMDRAIRAQ---- 260
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRG 207
SER + +S RGG + +GR + ++ RR + D G
Sbjct: 261 -PSER--KNNSAPRGG----NSFGRRDNNSFGRRDNSDRSSG 295
>gi|357511859|ref|XP_003626218.1| Arginine/serine-rich splicing factor [Medicago truncatula]
gi|355501233|gb|AES82436.1| Arginine/serine-rich splicing factor [Medicago truncatula]
Length = 296
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR I+VGN + R E+E LF K+G I +++K G+AFV FED RDA DAIR
Sbjct: 6 SRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL-------FVINFDPIRTRER 109
D + +D RL VE A G RG + + ++ + ++ P +
Sbjct: 66 DG--YKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQ 123
Query: 110 DIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V ++ R+ V++ E+ A+ D S+
Sbjct: 124 DLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEF 171
>gi|402585979|gb|EJW79918.1| hypothetical protein WUBG_09173 [Wuchereria bancrofti]
Length = 555
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRG 55
+R +FVGN + R+SE+ R+F KYG++E VD+K+ +AFV F+ + +A
Sbjct: 198 TRTLFVGNMPADIRESEIRRVFEKYGKVEDVDIKTPPETNAAYAFVLFQTLEQSMNAKAN 257
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ P R + + + + P+ L++ P + E K F
Sbjct: 258 EHDRPIRPGTTRCKIGYGKSQ---------------PSNRLWIGGLGPWTSAEYLAKAEF 302
Query: 116 EPYGNV--LHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYALKDDSERD 171
+ YG + L +FA+++F Q A A + L DR I V++A KDD + D
Sbjct: 303 DRYGLIDRLDYEEGADFAYIRFTDQNAAMDACRAMKGFPLGGRDRCIIVDFA-KDDQKED 361
>gi|170588995|ref|XP_001899259.1| Conserved hypothetical protein [Brugia malayi]
gi|158593472|gb|EDP32067.1| Conserved hypothetical protein, putative [Brugia malayi]
Length = 555
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRG 55
+R +FVGN + R+SE+ R+F KYG++E VD+K+ +AFV F+ + +A
Sbjct: 198 TRTLFVGNMPADIRESEIRRVFEKYGKVEDVDIKTPPETNAAYAFVLFQTLEQSMNAKAN 257
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ P R + + + + P+ L++ P + E K F
Sbjct: 258 EHDRPIRPGTTRCKIGYGKSQ---------------PSNRLWIGGLGPWTSAEYLAKAEF 302
Query: 116 EPYGNV--LHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYALKDDSERD 171
+ YG + L +FA+++F Q A A + L DR I V++A KDD + D
Sbjct: 303 DRYGLIDRLDYEEGADFAYIRFTDQNAAMDACRAMKGFPLGGRDRCIIVDFA-KDDQKED 361
>gi|332027470|gb|EGI67553.1| Splicing factor, arginine/serine-rich 1 [Acromyrmex echinatior]
Length = 248
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ +++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVSG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + ++ V+F ++ A++ D S+ V
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHDDMKYAVKKLDDSRFRSHEGEV 188
Query: 161 EYA-LKDDSERDDR 173
Y +K+D DR
Sbjct: 189 AYIRVKEDHSGGDR 202
>gi|225714068|gb|ACO12880.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
gi|290462833|gb|ADD24464.1| Splicing factor, arginine/serine-rich 4 [Lepeophtheirus salmonis]
Length = 233
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++GN +TR+ ++E+ F YG++ V +K+G+ FV FED RDA DA++ LD
Sbjct: 8 LYLGNISDDTRERDVEKFFKGYGKLREVALKNGYGFVEFEDHRDADDAVQDLDGKDMNGS 67
Query: 65 RRRLSVEWARGERGRHRD------------GSKSMANQRPT-KTLFVINFDPIRTRE--R 109
R R VE+AR R + M P +T + I + + TR +
Sbjct: 68 RVR--VEFARSPREKRNSRYQSRRSPPRGRRGPPMKRNPPGRRTQYRIRVENLSTRTSWQ 125
Query: 110 DIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
D+K +F G + + R N V+F + AL+ D + L R I +
Sbjct: 126 DLKDYFRSCGEITYTNAHKPRNNEGVVEFGDKRAMENALDRLDDTDLGGRRIKL 179
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGL- 56
+FV N T + EL ++F ++G I V D KS F FV FE+ DAA A+ L
Sbjct: 208 VFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALN 267
Query: 57 ----DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
DN + R + E + R ++ ++ L++ N D + ++ +K
Sbjct: 268 GYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDK-LK 326
Query: 113 RHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F PYG + ++ R+ FV F T EEA++AL + +V + + V A
Sbjct: 327 ELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALA 384
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ + S+L LF++ G++ V D+ S G+ +V + + +DAA A+ L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ P + + + ++ + R G+ + +F+ N D + + F
Sbjct: 89 NFTPL--HGKPIRIMYSNRDPTIRRSGNGN---------IFIKNLDK-AIDHKALHDTFS 136
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FVQ+++ E A KA+E + L D+ + V
Sbjct: 137 AFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYV 187
>gi|226487556|emb|CAX74648.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 389
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAI 53
SR +FVG +ET +S+L+ FS++G++ + +K GF FV E + + +
Sbjct: 58 SRKLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVL 117
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
+S W + ++ D K+ ++ P + +FV DP T ++ I+
Sbjct: 118 -------------SVSEHWLKNKK---IDPKKAKPSREPLRKIFVGGIDPEVTEDQ-IRE 160
Query: 114 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
+F +G V + + R+++ FV F T+ A KA+ S +R ++ R V A+
Sbjct: 161 YFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAI-SKERQEIFGRQCDVRVAVT 219
Query: 166 DD 167
D
Sbjct: 220 RD 221
>gi|426241493|ref|XP_004014625.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 2 [Ovis
aries]
Length = 339
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ + G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYEPNAKLCG-- 61
Query: 65 RRRLSVEWARG-ERGRHRDGSKSMANQR----------PTKTLFVINFDPIRTRE--RDI 111
R+ VE ARG R + R P +T F + + + +R +D+
Sbjct: 62 -ERVIVEHARGPSREGSYSSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDL 120
Query: 112 KRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 KDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 170
>gi|195036928|ref|XP_001989920.1| GH18528 [Drosophila grimshawi]
gi|193894116|gb|EDV92982.1| GH18528 [Drosophila grimshawi]
Length = 360
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 25/172 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG-ERGRHRD----------------GSKSMANQRP---TKTLFVINFDPI 104
R+ VE ARG RG +RD KS + P T+ ++
Sbjct: 66 --RVVVEPARGTARGSNRDRYEDRYGGRRGGGGRYNDKSSSRYGPPLRTEYRLIVENLSS 123
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKL 153
R +D+K + G V + + RRN V+F + + A+E D ++L
Sbjct: 124 RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL 175
>gi|195110201|ref|XP_001999670.1| GI24651 [Drosophila mojavensis]
gi|193916264|gb|EDW15131.1| GI24651 [Drosophila mojavensis]
Length = 246
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RGRHRDGSKSMAN----------QRPTKTLFVINFDPIR 105
+ YD RL VE+ RG RG +R+ +R + V P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGNNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGL-PGS 125
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKLVDRVISVEYA- 163
+D+K H G+V ++ + V+F E+ A++ D S+ V Y
Sbjct: 126 GSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIR 185
Query: 164 LKDDSERDDR 173
+++DS +DR
Sbjct: 186 VREDSGDNDR 195
>gi|392579716|gb|EIW72843.1| hypothetical protein TREMEDRAFT_25743, partial [Tremella
mesenterica DSM 1558]
Length = 749
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 26/156 (16%)
Query: 30 ERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG-----RHRDGS 84
ER+ M G+ FV F+ A+ A+ GLD F D ++L V++A +RG + G
Sbjct: 556 ERLSM--GYGFVGFKTKEAASKALPGLDG--FEVDGKKLEVKFA--QRGVEDVQKEEKGG 609
Query: 85 KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------------RRNFA 131
+ + TK L V N P ++++K F YG V +R+ R FA
Sbjct: 610 EMKGKSKGTK-LLVKNL-PFEATKKEVKELFSAYGQVKSLRVPKKPTLSASGAHSSRGFA 667
Query: 132 FVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
F++F T EA +A+++ + L+ R + +++A +DD
Sbjct: 668 FLEFTTHVEAQRAMDALKHTHLLGRHLVIQWAKEDD 703
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLD 57
+FV N + T S+LE FS++G++++V + G AFV F DA A R LD
Sbjct: 220 LFVRNLPFVTTTSDLETHFSRFGQVDQVHLPLSPAGQPLGTAFVLFRRPEDALSAFRELD 279
Query: 58 NIPF 61
F
Sbjct: 280 KTTF 283
>gi|322792693|gb|EFZ16561.1| hypothetical protein SINV_05882 [Solenopsis invicta]
Length = 386
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 38/154 (24%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG Y R+ +LE+ F KYGRI+ V MK+GFAFV
Sbjct: 1 MSTRVFVGGLTYRVRERDLEKFFRKYGRIKEVAMKNGFAFV------------------- 41
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120
+S+ W SM R ++V P TRERD++R F YG
Sbjct: 42 -------VSLMWFNC-------FFYSMVGTR----VYVGGL-PYGTRERDLERFFRGYGR 82
Query: 121 VLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
V I+ + FV+F+ +A A+ + +L+
Sbjct: 83 FRDVLIKNGYGFVEFDDYRDADDAVYELNGKELL 116
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LER F YGR V +K+G+ FV F+D RDA DA+ L+ G +
Sbjct: 59 VYVGGLPYGTRERDLERFFRGYGRFRDVLIKNGYGFVEFDDYRDADDAVYELN----GKE 114
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR--------PTKTLFVINFDPIRTR--ERDIKRH 114
S + R +R +++ ++ + PT+T + + + + +R +D+K +
Sbjct: 115 LLGESRDDMRHDRDSVNRNTRTASSYKQSLPRYGPPTRTEYRLTVENLSSRVSWQDLKDY 174
Query: 115 FEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
G V + + RRN V+F T + A++ D ++L R I
Sbjct: 175 MRQAGEVTYADAHKQRRNEGVVEFATYSDLKNAIDKLDDTELNGRRI 221
>gi|221130958|ref|XP_002164143.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Hydra magnipapillata]
Length = 264
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
IFVG E R +LE F G R++ V++K G+AFV FED RDA DA+ LD F
Sbjct: 12 IFVGRLNPEARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEFF 71
Query: 63 YDRRRLSVEWAR-GERG--RHRDGSKSMANQ------RPTKT---LFVINFDPIRTRERD 110
RL+VE A+ G R RDG + ++ RP T L V N R D
Sbjct: 72 GS--RLTVEHAKHGPRADMDKRDGDRRKGHENDRGRGRPYNTEWRLIVTNLSS-RVGWMD 128
Query: 111 IKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+K +F G V + R V+F + E +AL+ D S+ DR I +
Sbjct: 129 LKDYFRSAGEVTFTKANKERVGEGVVEFRSYREMKRALKKFDGSEFFDRRIKL 181
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYG--NVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
+FV +P R RD++ F+ G + V I+ +AFV+FE + +A A+ DR +
Sbjct: 12 IFVGRLNP-EARVRDLENFFKDNGFSRLKDVNIKLGYAFVEFEDKRDADDAVYELDRKEF 70
Query: 154 VDRVISVEYALKDDSERDDRYDSPRRGGY----GRHSPY 188
++VE+A D+ D RR G+ GR PY
Sbjct: 71 FGSRLTVEHAKHGPRADMDKRDGDRRKGHENDRGRGRPY 109
>gi|47834701|gb|AAT39004.1| AML1 [Citrus unshiu]
Length = 858
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 252 KPL--RRRKLDIHFSIPK----DNPSDKDLNQ---GTLVVFNLDPSVSNE-DLRQIFGAY 301
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL+S +RS + + I +E
Sbjct: 302 GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
>gi|452001712|gb|EMD94171.1| hypothetical protein COCHEDRAFT_1020240 [Cochliobolus
heterostrophus C5]
Length = 325
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLD 57
+++GN YE +L+R+FS++G IE V M GFA+V +++ DA AI LD
Sbjct: 138 LYIGNLYYEVTPDQLKRVFSRFGDIESVRMVYDNRGLSRGFAYVEYKNVSDAQAAIDNLD 197
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + R L V++ + + S + PTKTLF+ N ++D+ F
Sbjct: 198 MQVF--EGRNLVVQYHSPKYQTTKARSPNGEPNPPTKTLFIGNMS-FEMSDKDLNDLFRD 254
Query: 118 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DS 168
NV VR+ R FA F AT+A E + R + V+++ + +
Sbjct: 255 IRNVTDVRVAIDRRTGQPRGFAHADFIDVASATRAKEVLKEKIIYGRQLRVDFSTSNTQT 314
Query: 169 ERDDRYDS 176
+R R DS
Sbjct: 315 QRQKRQDS 322
>gi|348532825|ref|XP_003453906.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Oreochromis
niloticus]
Length = 241
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 16/159 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + ++ ++E LF KYG+I +++K+ FAFV FED RDA DA+ G +
Sbjct: 6 IYVGNLPMDVQERDIEDLFYKYGKIREIELKNNRGTIPFAFVRFEDPRDADDAVYGRNG- 64
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-----QRPTKTLFVINFDPIRTRERDIKRH 114
+GY +L VE+ R + G G + R ++ +++ P +D+K H
Sbjct: 65 -YGYGDSKLRVEYPRSKPGPMGGGGGAPRGRFGPPTRRSEFRVIVSGLPPSGSWQDLKDH 123
Query: 115 FEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTD 149
G+V ++R+ F++ E E A + L+ T+
Sbjct: 124 MREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDGTE 162
>gi|410916817|ref|XP_003971883.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Takifugu
rubripes]
Length = 310
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+G R+ ++ER F YGRI +D+K GF FV F+D RDA DA+ LD +
Sbjct: 6 IFIGRLSPTAREKDVERFFKGYGRIRDIDLKKGFGFVEFDDPRDAEDAVYELDGKELCNE 65
Query: 65 RRRLSVEWARGERG--------------RHRDGSKSMANQRP----TKTLFVINFDPIRT 106
R+++E AR R+ GS+S ++ P T+ ++ R
Sbjct: 66 --RVTIEHARVRLRGGRGRRPGGGRFSDRYGRGSQSSRSRNPPPVRTENRLIVENLSSRV 123
Query: 107 RERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K G V R + N V+F + + ALE ++ R I + A
Sbjct: 124 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNALEKLSGKEMNGRKIKLIEA 183
Query: 164 LK 165
K
Sbjct: 184 AK 185
>gi|56753309|gb|AAW24858.1| SJCHGC06087 protein [Schistosoma japonicum]
gi|226469806|emb|CAX70184.1| Heterogeneous nuclear ribonucleoprotein D0 [Schistosoma japonicum]
Length = 390
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAI 53
SR +FVG +ET +S+L+ FS++G++ + +K GF FV E + + +
Sbjct: 58 SRKLFVGGLSWETNESDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESEDCVSKVL 117
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
+S W + ++ D K+ ++ P + +FV DP T ++ I+
Sbjct: 118 -------------SVSEHWLKNKK---IDPKKAKPSREPLRKIFVGGIDPEVTEDQ-IRE 160
Query: 114 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
+F +G V + + R+++ FV F T+ A KA+ S +R ++ R V A+
Sbjct: 161 YFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAARKAI-SKERQEIFGRQCDVRVAVT 219
Query: 166 DD 167
D
Sbjct: 220 RD 221
>gi|256081430|ref|XP_002576973.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645372|emb|CCD59901.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 381
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAI 53
SR +FVG +ET +++L+ FS++G++ + +K GF FV E + D +
Sbjct: 50 SRKLFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE----DCV 105
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
+ ++P W + ++ D K+ ++ P K +FV DP T ++ I+
Sbjct: 106 SKVLSVP---------EHWLKNKK---IDPKKAKPSREPLKKIFVGGIDPEVTEDQ-IRE 152
Query: 114 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
+F +G V + + R+++ FV F T+ A KA+ S +R + R V A+
Sbjct: 153 YFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAI-SKERQDIFGRQCDVRVAVT 211
Query: 166 DD 167
D
Sbjct: 212 RD 213
>gi|194744791|ref|XP_001954876.1| GF16525 [Drosophila ananassae]
gi|190627913|gb|EDV43437.1| GF16525 [Drosophila ananassae]
Length = 253
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTR 107
+ YD RL VE+ RG RG D S+ +R + V P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGNRNDRSRDGGRMGGRGPPAKRSQYRVMVTGL-PGSGS 125
Query: 108 ERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKLVDRVISVEYA-LK 165
+D+K H G+V ++ + V+F E+ A++ D S+ V Y ++
Sbjct: 126 WQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVR 185
Query: 166 DDSERDDR 173
+DS +DR
Sbjct: 186 EDSGDNDR 193
>gi|256081434|ref|XP_002576975.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645374|emb|CCD59903.1| heterogeneous nuclear ribonucleoprotein,putative [Schistosoma
mansoni]
Length = 380
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAI 53
SR +FVG +ET +++L+ FS++G++ + +K GF FV E + D +
Sbjct: 50 SRKLFVGGLSWETNENDLKEYFSRWGKVTQCIIKLDRFTGNSRGFGFVTLESE----DCV 105
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
+ ++P W + ++ D K+ ++ P K +FV DP T ++ I+
Sbjct: 106 SKVLSVP---------EHWLKNKK---IDPKKAKPSREPLKKIFVGGIDPEVTEDQ-IRE 152
Query: 114 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
+F +G V + + R+++ FV F T+ A KA+ S +R + R V A+
Sbjct: 153 YFSSFGKVESLDLPYDTQKGKRKHYIFVSFSTEAAAKKAI-SKERQDIFGRQCDVRVAVT 211
Query: 166 DD 167
D
Sbjct: 212 RD 213
>gi|195451842|ref|XP_002073099.1| GK13948 [Drosophila willistoni]
gi|194169184|gb|EDW84085.1| GK13948 [Drosophila willistoni]
Length = 362
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 32/185 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG-ERGRHRD-------------------GSKSMANQR---PTKT---LFV 98
R+ VE ARG RG +RD S ++ R P +T L V
Sbjct: 66 --RVVVEPARGTARGSNRDRYDDRYGNRRGGGGRYNDKNKNSRSSSRYGPPLRTEYRLIV 123
Query: 99 INFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
N R +D+K + G V + + RRN V+F + + A+E D ++L
Sbjct: 124 ENLSS-RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNG 182
Query: 156 RVISV 160
R I +
Sbjct: 183 RRIHL 187
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + E ++E E LF K+G + + + GF FV +E+ DAA A+ L
Sbjct: 249 VYVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELH 308
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ Y R+L V A+ + R + K + K LFV N D ER
Sbjct: 309 DTE--YKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGINLFVKNLDDDIDDER- 365
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+++ F YG + +I + F FV F + +EATKA+ ++ + + + V A
Sbjct: 366 LRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALA 425
Query: 164 LKDDSER 170
+ D R
Sbjct: 426 QRKDVRR 432
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKSGFAFVYFEDDRDAADAIRGLD 57
+F+ N + L F+ +G I + + G+ FV+++ A AI+
Sbjct: 166 VFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAIK--- 222
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
++ G+ + + + + D N ++V N DP E + + F+
Sbjct: 223 HVYVGHHVSK------KDRQSKFDDMKLKFTN------VYVKNIDP-EISEAEFEELFKK 269
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
+GNV + + R F FV +E E+A +A+E ++ DR + V A K
Sbjct: 270 FGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQK 324
>gi|1403024|emb|CAA90876.1| hnRNP protein [Chironomus tentans]
Length = 322
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y TR+ +LE+ F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGTRERDLEKFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARGER--GRH---------------RDGSKSMANQR---PTKT---LFVINF 101
R+ VE ARG G H R + S +N R P +T L V N
Sbjct: 66 --RVVVEPARGTARGGSHRDRYDDRYGRRGRYDRYNNSSRSNSRYGPPLRTEYRLIVENL 123
Query: 102 DPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K + G V + + RN V+F T ++ A+E D ++L R I
Sbjct: 124 SS-RVSWQDLKDYMRQAGEVTYADAHKQNRNEGVVEFATLKDMKTAIEKLDDTELNGRRI 182
>gi|47220951|emb|CAG03484.1| unnamed protein product [Tetraodon nigroviridis]
Length = 603
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 29/177 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI---ERVDMKSGFAFVYFEDDRDAADAIRGLDN 58
S+ + V N + + L+ F K I +R GFAFV FE +DA DA+ L+N
Sbjct: 384 SKTLVVNNLAFSATEEVLQSTFEKATSIRIPQRDGRPKGFAFVEFETVKDATDALESLNN 443
Query: 59 IPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
+ R + +E++ RGE GR G PTKTLFV T ++ +K
Sbjct: 444 TDI--EGRSIRLEFSQNSGRGEGGRGNSG--------PTKTLFVKGLSE-DTTDQSLKEA 492
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
FE + RI + F FV F+ + + A E+ D ++ ++++YA
Sbjct: 493 FEA---AVAARIVTDKETGSSKGFGFVDFDNEADCKAAKEAMDDGEIDGSKVTLDYA 546
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---------GFAFVYFEDDRDAADA 52
+R +FV N Y EL+ +F + VD++ G A++ F+ + +A
Sbjct: 293 TRTLFVKNLPYSATADELKEVFE-----DAVDIRVPQGQNGNNRGIAYIEFKTEAEAEKM 347
Query: 53 I---RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109
+ +G D R + V++ GE+ + G+K A V+N E
Sbjct: 348 LEEAQGAD-----VQGRSIMVDFV-GEKSQK--GAKVPAASGAASKTLVVNNLAFSATEE 399
Query: 110 DIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ FE +RI + FAFV+FET ++AT ALES + + + R I +E++
Sbjct: 400 VLQSTFE---KATSIRIPQRDGRPKGFAFVEFETVKDATDALESLNNTDIEGRSIRLEFS 456
>gi|398411554|ref|XP_003857115.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
gi|339477000|gb|EGP92091.1| hypothetical protein MYCGRDRAFT_102763 [Zymoseptoria tritici
IPO323]
Length = 377
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 26/182 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKSGFAFVYFEDDRDAADAIR 54
S+ ++VGN +E +LE F ++G + + + GFAFV F D A A +
Sbjct: 187 SKILYVGNLFFEVTAPKLEAAFGRFGEVVSSKVVTDARGLSKGFAFVEFSDQEAANRAKQ 246
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRH-----RDGSKSMANQRPTKTLFVINFDPIRTRER 109
L++ F + RRLSV++ + R R+G +P+KTLF+ N + +R
Sbjct: 247 ELNHTEF--EGRRLSVQYHLKKDRREGGFSPREGG---TRNKPSKTLFIGNMS-YQMSDR 300
Query: 110 DIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
D+ F+ NVL VR+ R FA F E A KA E ++ + R + ++
Sbjct: 301 DLNDLFKEVRNVLDVRVAIDRRSGQPRGFAHADFIDMESAKKAKELLEQKSVYGRQLRID 360
Query: 162 YA 163
Y+
Sbjct: 361 YS 362
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 144
P+K L+V N T + ++ F +G V+ ++ + FAFV+F QE A +A
Sbjct: 186 PSKILYVGNLFFEVTAPK-LEAAFGRFGEVVSSKVVTDARGLSKGFAFVEFSDQEAANRA 244
Query: 145 LESTDRSKLVDRVISVEYALKDDSERDDRYDSPRRGG 181
+ + ++ R +SV+Y LK D R + SPR GG
Sbjct: 245 KQELNHTEFEGRRLSVQYHLKKD--RREGGFSPREGG 279
>gi|395845812|ref|XP_003795615.1| PREDICTED: serine/arginine-rich splicing factor 1 [Otolemur
garnettii]
Length = 312
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 82 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 140
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 141 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 199
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 200 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 244
>gi|158293128|ref|XP_314469.4| AGAP010496-PA [Anopheles gambiae str. PEST]
gi|157016810|gb|EAA09889.4| AGAP010496-PA [Anopheles gambiae str. PEST]
Length = 258
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 10 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 67
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL---------------FVINFDPIR 105
+ YD RL VE+ RG GS+ + R ++ ++ P
Sbjct: 68 YDYDGYRLRVEFPRGGGPGSYRGSRQGNSDRNSRGGDRNNRGPPARRSQFRVMVTGLPSS 127
Query: 106 TRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVIS 159
+D+K H G+V + ++ V+F E+ A++ D S+ +S
Sbjct: 128 GSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHEDMKYAIKKLDDSRFRSHEVS 182
>gi|410910210|ref|XP_003968583.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Takifugu
rubripes]
gi|47227796|emb|CAG08959.1| unnamed protein product [Tetraodon nigroviridis]
Length = 245
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 28/169 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAF+ FED RDA DA+ G D
Sbjct: 16 IYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDG- 74
Query: 60 PFGYDRRRLSVEW--------------ARGERGRHRDGSKSMANQRPTKTLFVINFDPIR 105
+ YD RL VE+ RGR+ S R ++ +++ P
Sbjct: 75 -YDYDGYRLRVEFPRSGRGSRGGFGGIGGAPRGRYGPPS------RRSEYRVLVSGLPQS 127
Query: 106 TRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 128 GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 176
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + E Q E LF K+G I + GF FV FE AA A+ L
Sbjct: 230 IYVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLH 289
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + R+L V A+ + R + KS N + K L++ N + E+
Sbjct: 290 DTEI--NGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVNLYIKNLEDDIDDEK- 346
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ FEP+G + ++ R+ F FV F + +EATKA+ + + + + V A
Sbjct: 347 LRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLA 406
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 21/184 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + + L F+ +G + + + G+ FV++E A +AI+ ++
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVN 196
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + R ER D K+ ++V N DP +E + F
Sbjct: 197 GMLLNDKKVFVGHHIPRKERQSKIDEMKAQ-----YTNIYVKNLDPELGQE-GFEELFGK 250
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+GN+ + R F FV FE+ E+A A+E+ +++ R + V A K SER
Sbjct: 251 FGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQK-KSER 309
Query: 171 DDRY 174
+D
Sbjct: 310 EDEL 313
>gi|170588713|ref|XP_001899118.1| SF2 [Brugia malayi]
gi|158593331|gb|EDP31926.1| SF2, putative [Brugia malayi]
Length = 228
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 96/220 (43%), Gaps = 26/220 (11%)
Query: 1 MSRP--IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIR 54
MSR I+VGN R ++E +FSKYGR+ VD+K FAFV FED RDA DA+R
Sbjct: 1 MSRESRIYVGNLPTTVRAKDVEDIFSKYGRVLYVDLKDRRQPYFAFVEFEDARDAEDAVR 60
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHR-----DGSKSMANQRPTKTL------------F 97
G D + Y+ RL VE+ RG R D ++++ R
Sbjct: 61 GRDG--YDYEGYRLRVEFPRGLGPRGPGGRPYDSGRNLSVSRSAGGGGSSSGSRRANYRV 118
Query: 98 VINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDR 156
+++ P +D+K H G+V + + R+ V++ E+ AL D +K
Sbjct: 119 IVSGLPASGSWQDLKDHMREAGDVCYTDVLRDGTGIVEYGRYEDMKYALRKLDDTKFKSH 178
Query: 157 VISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAY 196
Y + + R S R GR S SP+Y
Sbjct: 179 EGETSYIRVKEDNGESRAHSRSRSPVGRASRGSPQYSPSY 218
>gi|348670466|gb|EGZ10288.1| hypothetical protein PHYSODRAFT_361940 [Phytophthora sojae]
Length = 409
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 34/204 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S ++VGN YE Q ++E F K+G IE+ +K G+AFV++E DA A++ +++
Sbjct: 20 STKLYVGNLFYELTQRDVEAEFGKFGPIEQCAVKKGYAFVHYEQLEDAELAVQEMNDKEL 79
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQ-------------------RPTKTLFVINFD 102
G R R++ + G + R+ + + LFV N
Sbjct: 80 GGRRLRVAFAVSHGTQRRYDGPPPPLQAPAGQPQQQQPPLLHSPRFPVNASPNLFVANIP 139
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNF-------AFVQFETQEEATKALESTDRSKLVD 155
P + ++ + F +G V +V++ AFV F A KA +T
Sbjct: 140 P-HIKMSELDQAFAQFGEVKNVKVLPQARPDAPMSAFVDFSDVASAQKAHSATI------ 192
Query: 156 RVISVEYALKDDSERDDRYDSPRR 179
+++ ++ D + R ++ D PRR
Sbjct: 193 -IVAGQHLRTDYNFRKNKGDGPRR 215
>gi|195328687|ref|XP_002031046.1| GM24242 [Drosophila sechellia]
gi|194119989|gb|EDW42032.1| GM24242 [Drosophila sechellia]
Length = 244
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 49/204 (24%)
Query: 16 QSELERLFSKYGRIERVD--------MKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRR- 66
+SEL RLFSKYG I + + + FV F +R AA A+ L+ GY+ R
Sbjct: 54 ESELHRLFSKYGEIRKAKVIRHRDTGISCCYGFVDFVSERQAAAAVNNLN----GYETRG 109
Query: 67 -RLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR 125
RL V +AR ++ L+V N P E+ I+ F P+GN+L V
Sbjct: 110 KRLKVAFAR-------------PSEYENTNLYVANL-PTYMDEKKIRELFAPFGNILDVT 155
Query: 126 IRRN--------FAFVQFETQEEATKALESTDRSKL--VDRVISVEYALKDDSERDDRYD 175
+ R+ AF+ FE +A +A DR + R + V++ + S Y
Sbjct: 156 LLRHRFNNKFRGVAFLDFELVRDAEEAKYGMDRHMIKGAFRPLKVKFVERAKSGPTSHY- 214
Query: 176 SPRRGGYGRHSPYGRSPSPAYRRR 199
RH G+S +P Y+RR
Sbjct: 215 --------RHK--GKSSTPPYKRR 228
>gi|1049084|gb|AAA93071.1| SRp55-2 [Homo sapiens]
Length = 135
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC-- 61
Query: 65 RRRLSVEWARGERGRHRDG 83
+ VE ARG R R RDG
Sbjct: 62 GEHVIVEHARGPR-RDRDG 79
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RE+DI+R F YG +L V ++ + FV+FE +A A+ + +L + VE+A
Sbjct: 13 VREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGEHVIVEHA 70
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 40/236 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYG---------RIERVDMKSGFAFVYFEDDRDAADAIRG 55
+F+GN Y+ + + + G + R D G+ F+ + + A A +
Sbjct: 175 LFIGNIPYKWTEDIFKEAVEEVGPGVVKVNLVKAPRSDTNKGYGFIEYYNQACAEYAKKK 234
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ F D+ +V WA + G G + +Q K+L++ N T+E+ +KR F
Sbjct: 235 MSTPEFKLDKNAPNVSWADTKNG----GESASTSQ--VKSLYIKNLPKTVTQEQ-LKRLF 287
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
E G V V I + FV F+ + A KAL+ T+R +L ++ A
Sbjct: 288 EHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMKALKDTERYELDGHLLDCSLAKPLAE 347
Query: 169 ERDDRYDSPRRG---------GY---GRHSPYGRSPSPAYRRRPSPDYGRGRSPAY 212
++DD P+ G GY G ++P G + AY +G G + AY
Sbjct: 348 KKDDTTSVPKGGPLLPSYTPLGYGLMGAYNPLGNGLAGAYN-----PHGNGVAGAY 398
>gi|334322457|ref|XP_003340247.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Monodelphis
domestica]
gi|395531888|ref|XP_003768005.1| PREDICTED: serine/arginine-rich splicing factor 1 [Sarcophilus
harrisii]
Length = 249
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------QRPTKTLFVINFDPIRTRE 108
+ YD RL VE+ R RG R G R ++ V++ P
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSW 135
Query: 109 RDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 QDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 181
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + E Q + LFS++G + +++ GF FV FE+ AA A+ L
Sbjct: 237 LYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLH 296
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ F + ++L V A+ + R + KS + + K L++ N + E+
Sbjct: 297 DTDF--NGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDEK- 353
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ FEP+G + ++ R+ F FV F + +EATKA+ + + + + V A
Sbjct: 354 LRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLA 413
>gi|393216709|gb|EJD02199.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 270
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 7/165 (4%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M+R +++G +TR E+ + F +G + V + +GF FV FE RDA DA+R + P
Sbjct: 1 MARRLYLGKLPPDTRTDEVTKYFDGFGPLVDVRVMTGFGFVEFESSRDAEDALRDIRGKP 60
Query: 61 FGYDRRRLSVEWARGERGRHRD-GSKSMA-NQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
F + VE+A+ RGR D +S A +RP ++ T +D+K
Sbjct: 61 FLGS--NIVVEFAKENRGRRNDYEDRSFAPRRRPAGIRISVDNISKDTSWQDLKDFGREA 118
Query: 119 GNVLHVRIRRNF---AFVQFETQEEATKALESTDRSKLVDRVISV 160
G+V I R +++ ++++A +A++ D +L + + V
Sbjct: 119 GSVSFADIDREVPGRGILEYASRDDAEQAVKELDGKELRGQPVHV 163
>gi|367029667|ref|XP_003664117.1| hypothetical protein MYCTH_2306567 [Myceliophthora thermophila ATCC
42464]
gi|347011387|gb|AEO58872.1| hypothetical protein MYCTH_2306567 [Myceliophthora thermophila ATCC
42464]
Length = 296
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYG--RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+++GN ++++E F+ +G I + + +GF F+ ++D DA D + F
Sbjct: 9 LYLGNLPRHATKADVEAHFATHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSDFM 68
Query: 63 YDRRRLSVEWARGERGR-HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-N 120
+R L+V++ARG R R H S R T I P T +D+K G +
Sbjct: 69 GER--LTVQFARGSRHREHGHDRNSAPRPRRTPHRMQITGLPNDTSWQDLKDFARQSGAD 126
Query: 121 VLHVRIRRNFA---FVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDR--YD 175
V++ RN FV+FET + A+E D + + ++ A + D R DR
Sbjct: 127 VVYSETNRNGGTEGFVEFETAADLRTAVEKLDGREFKNVRVTCIAATQPDYPRGDRGRSR 186
Query: 176 SPRRGGYGRHSPYGRSPSPA--YRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHG 229
SPRR + P P P Y RR P RG SP D Y P Y R P G
Sbjct: 187 SPRR-----YLP----PPPVDDYDRRGPP---RGYSPRRDGYREPTYRYRSPPRRG 230
>gi|417409273|gb|JAA51151.1| Putative splicing factor arginine/serine-rich 1-like protein,
partial [Desmodus rotundus]
Length = 278
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 48 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 106
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 107 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 165
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 166 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 210
>gi|405957004|gb|EKC23243.1| Heterogeneous nuclear ribonucleoprotein A/B [Crassostrea gigas]
Length = 475
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 36/172 (20%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
R IFVGN +ET Q +L+ F+K+G +E +K GF FV F +D + +
Sbjct: 58 RKIFVGNLSWETSQKDLKDYFTKFGEVENCVLKQDLETKRSRGFGFVVF---KDPSTVDK 114
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSM--ANQRPTKTLFVINFDPIRTRERDIK 112
LD E GR+ D K+ + K +FV DP T E +IK
Sbjct: 115 VLD-------------EKTHNLGGRNIDPKKANPRKKEEVIKKIFVGKVDPSLT-EAEIK 160
Query: 113 RHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDR 156
+FE +G V + + RR F FV+F+ +E+A K + K+ D+
Sbjct: 161 EYFETFGEVKKIDLPYDKTKEQRRAFCFVEFK-EEDAVKKITDQAVHKIKDQ 211
>gi|255586946|ref|XP_002534073.1| RNA-binding protein, putative [Ricinus communis]
gi|223525900|gb|EEF28317.1| RNA-binding protein, putative [Ricinus communis]
Length = 779
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL+ LF +YG I + GF + + D RDA A+RGL N
Sbjct: 155 SRTLFVRNINSNVEDSELKSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARAAMRGLQN 214
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N D + + D+++ F Y
Sbjct: 215 KPL--RRRKLDIHFSIPK----DNPSEKDINQ---GTLVVFNLDASVSND-DLRQIFGAY 264
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL + +RS + + I +E
Sbjct: 265 GEVKEIRETPHKRHHKFIEFYDVRSAEAALRALNRSDIAGKRIKLE 310
>gi|432882987|ref|XP_004074177.1| PREDICTED: uncharacterized protein LOC101163182 isoform 1 [Oryzias
latipes]
Length = 372
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQR----------PTKT---LFVINFDPIRTR 107
+ R+ VE +G R G + P +T L V N R
Sbjct: 60 LCGE--RVIVEHTKGPRRDGGYGGGGRSGYGRWGGRDRYGPPVRTDYRLIVENLSS-RCS 116
Query: 108 ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + RRN ++F + +ALE D +++ R I
Sbjct: 117 WQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 170
>gi|403166701|ref|XP_003326577.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166678|gb|EFP82158.2| hypothetical protein PGTG_07555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 258
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
R I+VG + ++++E+ F +YG + V + +GF F+ ++ RDA DA+ L+ F
Sbjct: 5 GRRIYVGRIPPDASRTDVEKYFGRYGTLMDVRIMAGFGFLEYDSVRDAEDAVHDLNGRDF 64
Query: 62 GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121
+ RL VE+A+ RGR S +R L V T +D+K GNV
Sbjct: 65 MGE--RLIVEFAKAPRGRDIH-SGGHGPRRGGFRLLVKGLSH-ETSWQDLKDFARQAGNV 120
Query: 122 LHVRIRRNF---AFVQFETQEEATKALESTDRSKLVDRVISV 160
+ RN ++F +Q++A A+ D ++L V+++
Sbjct: 121 TRADVDRNMPGEGLIEFASQDDADNAIRKLDGTELKGMVVTL 162
>gi|297693630|ref|XP_002824116.1| PREDICTED: serine/arginine-rich splicing factor 9-like [Pongo
abelii]
Length = 221
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV ED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREMELKNRHGLVPFAFVRLEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + +R++ V++ +E+ AL +K
Sbjct: 134 AGDVCYADVRKDGVGMVEYLRKEDMEYALRKLHDTKF 170
>gi|291391164|ref|XP_002712117.1| PREDICTED: RNA binding motif protein 28 isoform 2 [Oryctolagus
cuniculus]
Length = 755
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 40/209 (19%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKSCRGFGYVTFSMPEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL-----------------FVI 99
++ +++V A+ + R SK ++TL +I
Sbjct: 66 TT----FEGHKINVTIAKK---KLRAKSKEKGKNENSETLKKELKSKKPKVADKKARLII 118
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK 152
+ E D+K F +G VL V + R FAFVQF+ EA KAL+ + +
Sbjct: 119 RNLSFKCSEDDLKTIFAQFGAVLEVNVPKKPDGKMRGFAFVQFKNLLEAGKALKGMNMKE 178
Query: 153 LVDRVISVEYALKDDSERDDRYDS-PRRG 180
+ R ++V++A+ D +D + S P +G
Sbjct: 179 IKGRTVAVDWAVAKDKYKDTQAVSGPGKG 207
>gi|291391162|ref|XP_002712116.1| PREDICTED: RNA binding motif protein 28 isoform 1 [Oryctolagus
cuniculus]
Length = 767
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 40/209 (19%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKSCRGFGYVTFSMPEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL-----------------FVI 99
++ +++V A+ + R SK ++TL +I
Sbjct: 66 TT----FEGHKINVTIAKK---KLRAKSKEKGKNENSETLKKELKSKKPKVADKKARLII 118
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK 152
+ E D+K F +G VL V + R FAFVQF+ EA KAL+ + +
Sbjct: 119 RNLSFKCSEDDLKTIFAQFGAVLEVNVPKKPDGKMRGFAFVQFKNLLEAGKALKGMNMKE 178
Query: 153 LVDRVISVEYALKDDSERDDRYDS-PRRG 180
+ R ++V++A+ D +D + S P +G
Sbjct: 179 IKGRTVAVDWAVAKDKYKDTQAVSGPGKG 207
>gi|355715663|gb|AES05398.1| RNA binding motif protein 28 [Mustela putorius furo]
Length = 756
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 49/229 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARG-------ERGRHRDGSKSMANQRPT-------KTLFVINFD 102
++ +++V A+ E+G + + +P K +I
Sbjct: 66 TT----FEGCKINVTIAKKKQRNKSKEKGENENSEPPKKELKPKKPKLADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+S + ++
Sbjct: 122 SFKCSEDDLKTVFAQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDY 204
R ++V++A+ D ++ + S +P +RP P +
Sbjct: 182 RTVAVDWAVAKDKYKNTQSAS----------------APGEEKRPEPKH 214
>gi|453089609|gb|EMF17649.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 337
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 26/183 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++VGN +E ELE F ++G + + GF F+ A +AIRGLD
Sbjct: 149 LYVGNLFFEVTAQELEAEFGRFGEVVNSRIVKDPTGSSRGFGFIELSTTEAAMNAIRGLD 208
Query: 58 NIPFGYDRRRLSVEWARGER---------GRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
F RR L + R ++ R RD + A+ P+KTLF+ N +
Sbjct: 209 QKVF-QGRRMLVQKHVRKDKPKSPGGSYAPRDRDAPRDRASASPSKTLFIGNMS-YEMSD 266
Query: 109 RDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
RD+ F NVL VR+ R FA F E A KA E + R + V
Sbjct: 267 RDLNNLFREIKNVLDVRVAIDRRSGQPRGFAHADFTDVESAEKAKEFLGSKMVYGRQLRV 326
Query: 161 EYA 163
++A
Sbjct: 327 DFA 329
>gi|417404448|gb|JAA48976.1| Putative nucleolar protein fibrillarin nop77 rrm superfamily
[Desmodus rotundus]
Length = 763
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARTEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMPEDVQRALKEV 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ +++V A+ + R + +D ++ P K +I
Sbjct: 66 TT----FEGSKINVSVAKKKLRNKSKDKGGKENSESPKKEQKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+S + ++
Sbjct: 122 SFKCSEDDLKTIFAQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R I+V++A+ D ++ + S
Sbjct: 182 RTIAVDWAVAKDKYKNTQSAS 202
>gi|356530557|ref|XP_003533847.1| PREDICTED: protein MEI2-like 2-like [Glycine max]
Length = 862
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 193 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQN 252
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 253 KPL--RRRKLDIHFSIPK----DNPSDKDINQ---GTLVVFNLDPSVSNE-DLRQIFGAY 302
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL+S +RS + + I +E
Sbjct: 303 GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 348
>gi|451849890|gb|EMD63193.1| hypothetical protein COCSADRAFT_38066 [Cochliobolus sativus ND90Pr]
Length = 326
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 26/192 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIRGLD 57
+++GN YE +L+R+FS++G IE + + GFA+V +++ DA AI LD
Sbjct: 138 LYIGNLYYEVTPDQLKRVFSRFGDIESIKIVYDNRGLSRGFAYVEYKNVSDAQAAIDNLD 197
Query: 58 NIPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
F + R L V++ + +GR +G++ P+KTLF+ N ++D+
Sbjct: 198 MQVF--EGRNLVVQFHAPKYQPAKGRGPNGNEP---NPPSKTLFIGNMS-FEMSDKDLND 251
Query: 114 HFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
F NVL VR+ R FA F AT+A E + R + V+++
Sbjct: 252 LFRDIRNVLDVRVAIDRRTGQPRGFAHADFIDVASATRAREVLKEKVIYGRQLRVDFSKS 311
Query: 166 D-DSERDDRYDS 176
++R+ R DS
Sbjct: 312 SPQTQREKRQDS 323
>gi|426241491|ref|XP_004014624.1| PREDICTED: serine/arginine-rich splicing factor 6 isoform 1 [Ovis
aries]
Length = 344
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ + G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYEPNAKLCG-- 61
Query: 65 RRRLSVEWARGER------GRHRDGSKSMANQR----------PTKTLFVINFDPIRTRE 108
R+ VE ARG H G + R P +T F + + + +R
Sbjct: 62 -ERVIVEHARGPXXXXXXFSSHDKGGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRC 120
Query: 109 --RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 SWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 175
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 101/257 (39%), Gaps = 37/257 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMKSG------FAFVYFEDDRDAADAIRGLD 57
+FV N T EL+ +F ++G I V M+ G F FV FE+ DAA A+ L+
Sbjct: 209 VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 268
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ + R K A++ L+V N D
Sbjct: 269 GKKF--DDK----EWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSLG 322
Query: 107 RERDIKRHFEPYGNVLHVR-------IRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
++ +K F P+G + + I R FV F T +EA++AL + +V + +
Sbjct: 323 DDK-LKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLY 381
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPV 219
V A + + R + + + + P G PS R P G G GP
Sbjct: 382 VTLAQRKEDRR-----ARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPP 436
Query: 220 YDQRRSPDHGRHRSPVP 236
P G + VP
Sbjct: 437 AIIPSQPGFGYQQQLVP 453
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADA 52
++ ++VG+ + ++L LF++ G++ V D+ S G+ +V F + +DAA A
Sbjct: 26 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 85
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
+ L+ P + R + + ++ HRD S + Q +F+ N D + +
Sbjct: 86 LDVLNFTPL--NNRPIRIMYS------HRDPSIRKSGQ---GNIFIKNLDR-AIDHKALH 133
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L ++ + + FVQF+ +E A KA+E + L D+ + V
Sbjct: 134 DTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 188
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMKSG------FAFVYFEDDRDAADAIRGLD 57
++V N T + +L+++F +YG I V M+ G F FV FE+ DAA ++ L+
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALN 269
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ +GR K ++ L+V N D T
Sbjct: 270 GKTF--DEK----EWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSIT 323
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
++ +K F +G + ++ R+ FV F T EEA++AL + +V + +
Sbjct: 324 DDK-LKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLY 382
Query: 160 VEYA 163
V A
Sbjct: 383 VALA 386
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ E +++L LF+++G++ + D+ S G+ +V + + DAA AI L
Sbjct: 31 LYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAIEVL 90
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ P R+ + RD + + T +++ N D + + F
Sbjct: 91 NFTPVNGKPIRIMYSY--------RDPT---IRKSGTGNIYIKNLDK-AIDNKALHDTFS 138
Query: 117 PYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISV 160
+G++L ++ + + FVQF+ +E A A++ + L D+ + V
Sbjct: 139 AFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYV 189
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVGN + + L R F +G I + + GF +V F DAA A +
Sbjct: 236 LFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEFATSADAAKAQAEM 295
Query: 57 DNIPFGYDRRRLSVEWA----RGERGRHRDGSKSMANQR--PTKTLFVINFDPIRTRERD 110
+ D R L+V+++ + + G+ D + ++R P+ TLF+ N T +
Sbjct: 296 HQ--YELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRSAPSNTLFLGNLSFDCTNDS- 352
Query: 111 IKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
I+ F YGN+ V + + F +V F +QEEAT AL++ + + R I ++Y
Sbjct: 353 IQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNIRIDY 412
Query: 163 A 163
A
Sbjct: 413 A 413
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYF---EDDRDAA 50
S +F+GN ++ ++ +F++YG I RV + + GF +V F E+ A
Sbjct: 336 SNTLFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAAL 395
Query: 51 DAIRGLD 57
DA+ G D
Sbjct: 396 DALNGQD 402
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER------VDMKS-GFAFVYFEDDRDAADAIRGLD 57
+FV N E EL+ LFS YG I ++ KS GF FV F++ DA A+ L+
Sbjct: 234 VFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELN 293
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
N + + V A+ +R R + + + K LF+ N D E+
Sbjct: 294 NKEIA--GQPIYVGRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSEK- 350
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+GN+ R+ + F FV F + EEATKA+ ++ + + + V A
Sbjct: 351 LENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALA 410
Query: 164 LKDDSER 170
+ D R
Sbjct: 411 QRKDVRR 417
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 101/257 (39%), Gaps = 37/257 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMKSG------FAFVYFEDDRDAADAIRGLD 57
+FV N T EL+ F ++G I V M+ G F FV FE+ DAA A+ L+
Sbjct: 212 VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 271
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ + R K A++ L+V N D
Sbjct: 272 GKNF--DDK----EWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIG 325
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F P+G + ++ R+ FV F T EEA++AL + +V + +
Sbjct: 326 DEK-LKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 384
Query: 160 VEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPV 219
V A + + R + + + + P G PS R P G G GP
Sbjct: 385 VTLAQRKEDRR-----ARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQLFYSQGPP 439
Query: 220 YDQRRSPDHGRHRSPVP 236
P G + +P
Sbjct: 440 AIIPSQPGFGYQQQLMP 456
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADA 52
++ ++VG+ + ++L LF++ G++ V D+ S G+ +V F + +DAA A
Sbjct: 29 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 88
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
+ L+ P + R + + ++ HRD S + Q +F+ N D + +
Sbjct: 89 LDVLNFTPL--NNRPIRIMYS------HRDPSIRKSGQ---GNIFIKNLDR-AIDHKALH 136
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L ++ + + FVQF+ +E A KA+E + L D+ + V
Sbjct: 137 DTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 191
>gi|222623563|gb|EEE57695.1| hypothetical protein OsJ_08169 [Oryza sativa Japonica Group]
Length = 955
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + + GF + + D R A A+RGL N
Sbjct: 303 SRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQN 362
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 363 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 412
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G V +R +++ F++F A AL S ++S++ + I +E +
Sbjct: 413 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQ 472
Query: 164 LKDDSERDD--RYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
L D ++D+ Y P G SP SP A+ + SP
Sbjct: 473 LGHDIDQDEPRSYRIPHVG-----SPIASSPPGAWAQYSSP 508
>gi|356510359|ref|XP_003523906.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 409
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 5 IFVGNFEYETRQSELERLFS-KYGRIERVDM--------KSGFAFVYFEDDRDAADAIRG 55
IFVG+ + S L F+ +Y ++ + G+ FV F DD + + A+
Sbjct: 175 IFVGDLAADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTE 234
Query: 56 LDNIPFGYDRRRLSVEWARG----ERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERD 110
++ + R+ R ++G +G+ S + T T +FV DP T E D
Sbjct: 235 MNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGGLDPNVTAE-D 293
Query: 111 IKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168
+K+ F YG ++ V+I + FVQF + A +AL+ + + + +++ +
Sbjct: 294 LKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLS------- 346
Query: 169 ERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYD 221
+GRSP+ ++ D+G S AY Y GPVYD
Sbjct: 347 -------------------WGRSPA---NKQFRADFGNAWSGAY--YGGPVYD 375
>gi|50540286|ref|NP_001002610.1| splicing factor, arginine/serine-rich 5 [Danio rerio]
gi|49900455|gb|AAH75982.1| Splicing factor, arginine/serine-rich 5b [Danio rerio]
Length = 285
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+G R+ ++ER F YGRI +D+K GF FV F+D RDA DA+ LD +
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNE 65
Query: 65 RRRLSVEWARGER-------------GRHRDGSK-SMANQRPTKT---LFVINFDPIRTR 107
R+++E AR R+ GS+ S N P +T L V N R
Sbjct: 66 --RVTIEHARVRLRGGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLIVENLSS-RVS 122
Query: 108 ERDIKRHFEPYGNVLHVRIRR---NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+D+K G V R N V+F + + ALE ++ R I + A
Sbjct: 123 WQDLKDFMRQAGEVTFADAHRPNLNEGVVEFASHSDLKNALEKLSGKEINGRKIKLVEA 181
>gi|218191474|gb|EEC73901.1| hypothetical protein OsI_08719 [Oryza sativa Indica Group]
Length = 955
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + + GF + + D R A A+RGL N
Sbjct: 303 SRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQN 362
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 363 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 412
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G V +R +++ F++F A AL S ++S++ + I +E +
Sbjct: 413 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQ 472
Query: 164 LKDDSERDD--RYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
L D ++D+ Y P G SP SP A+ + SP
Sbjct: 473 LGHDIDQDEPRSYRIPHVG-----SPIASSPPGAWAQYSSP 508
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIRGLD 57
+++GN YE +L+++FS++G + V M GF +V F+ DA AI LD
Sbjct: 131 LYIGNLYYEVTTEQLQKVFSRFGEVASVKIVYDNRGMSRGFGYVEFKSIDDAQTAIDNLD 190
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
F + R L V++ R + R + P+KTLF+ N ++D+ F
Sbjct: 191 MQVF--EGRNLVVQYHRAKSDSDRPKREFPPANLPSKTLFIGNMS-FEMSDKDLNDLFRD 247
Query: 118 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
NV VR+ R FA F ATKA E + R + V+++
Sbjct: 248 IRNVNDVRVAIDRRTGQPRGFAHADFLDVASATKAKEILSAKTIYGRELRVDFS 301
>gi|157110209|ref|XP_001651001.1| arginine/serine-rich splicing factor [Aedes aegypti]
gi|108883952|gb|EAT48177.1| AAEL000769-PA [Aedes aegypti]
Length = 247
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M ++ G ++TR+ +LER F +GRI + ++ G+AFV F+D RDA DAI L+
Sbjct: 1 MGSRVYAGKLPHDTRERDLERFFEGFGRIREILLRRGYAFVEFDDYRDAEDAIYELNGAK 60
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMAN--QRPTKTLFVINFDPIRTRERDIKRHFEPY 118
+R+ VE + R GS + QR L V N R R++K +
Sbjct: 61 L--LGQRIVVEATK--RPPRFGGSSNRPKPPQRTYHRLIVENLSS-RIDWRELKAYMRKA 115
Query: 119 GNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
GNV R R N V+F ++ + +AL+ D ++L R I +
Sbjct: 116 GNVTFADAHRDRMNEGVVEFASRHDMKQALKMFDDTELNGRYIRL 160
>gi|26252146|gb|AAH40811.1| Rbm28 protein [Mus musculus]
Length = 750
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>gi|26383576|dbj|BAC25546.1| unnamed protein product [Mus musculus]
Length = 248
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R + V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRAENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+ +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVECVPKEDMTYAVRKLDNTKF 180
>gi|348517719|ref|XP_003446380.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Oreochromis
niloticus]
Length = 293
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IF+G R+ ++ER F YGRI +D+K GF FV F+D RDA DA+ LD +
Sbjct: 6 IFIGRLSPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNE 65
Query: 65 RRRLSVEWARGE---------------------RGRHRDGSKSMANQRPTKTLFVINFDP 103
R+++E AR RG S++ R L V N
Sbjct: 66 --RVTIEHARVRLRGGRGRGGGGGGGRFSDRYGRGSQNSRSRNPPPMRTENRLIVENLSS 123
Query: 104 IRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
R +D+K G V R + N V+F + + AL+ ++ R I +
Sbjct: 124 -RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASHSDLKNALDKLSGKEINGRKIKL 182
Query: 161 EYALK 165
A K
Sbjct: 183 IEAAK 187
>gi|432882991|ref|XP_004074179.1| PREDICTED: uncharacterized protein LOC101163182 isoform 3 [Oryzias
latipes]
Length = 388
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQR----------PTKT---LFVINFDPIRTR 107
+ R+ VE +G R G + P +T L V N R
Sbjct: 60 LCGE--RVIVEHTKGPRRDGGYGGGGRSGYGRWGGRDRYGPPVRTDYRLIVENLSS-RCS 116
Query: 108 ERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + RRN ++F + +ALE D +++ R I
Sbjct: 117 WQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTEVNGRKI 170
>gi|395833588|ref|XP_003789808.1| PREDICTED: RNA-binding protein 28 [Otolemur garnettii]
Length = 762
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 25/194 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYF---EDDRDAADAI 53
+FVG R +LE+LFS+ G +++ + + GF +V F ED + A I
Sbjct: 6 LFVGGLPSSARSEQLEQLFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL-------FVINFDPIRT 106
++ + + E+G++ + S + +P K +I +
Sbjct: 66 TTFEDCKINVTVAKKKLRDKAKEKGKNENPEFSKKDLKPKKAKVADKKARLIIRNLSFKC 125
Query: 107 RERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E D+K F +G VL V I R FAFVQF+ EA KAL+S + ++ R ++
Sbjct: 126 SEIDLKTVFAQFGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVA 185
Query: 160 VEYALKDDSERDDR 173
V++A+ D +D +
Sbjct: 186 VDWAVAKDKYKDTQ 199
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
++V N T EL + F +YG I D KS F FV FE+ DAA A+ GL+
Sbjct: 214 VYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLN 273
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
++ EW G+ +GR K A++ L++ N D +
Sbjct: 274 G------KKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNLDDTIS 327
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F YG + ++ R+ FV F T EEA++AL + + + +
Sbjct: 328 DEK-LKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLY 386
Query: 160 VEYA 163
V A
Sbjct: 387 VALA 390
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + G+ FV F+ + A +AI L+
Sbjct: 123 IFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLN 182
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ D++ + R ++ R SK+ N ++V N T + ++ + F
Sbjct: 183 GMLIN-DKQVYVGHFLR-KQDRENALSKTKFN-----NVYVKNLSE-STTDEELMKFFGE 234
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDR 156
YG + I R+ F FV FE ++A KA+E + K+ D+
Sbjct: 235 YGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDK 280
>gi|354472029|ref|XP_003498243.1| PREDICTED: serine/arginine-rich splicing factor 1 [Cricetulus
griseus]
Length = 201
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
D+K H G+V + + R+ V+F +E+ T A+ D +K + + L
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEVGYTFIL 191
>gi|390352204|ref|XP_003727843.1| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 302
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y+ R+ ++ER F +GRI +++K+GF FV FED RDA DA+ L+ +
Sbjct: 6 VYVGRLSYQARERDVERFFRGFGRIREINLKNGFGFVEFEDYRDADDAVYELNGKELVGE 65
Query: 65 RRRLSVEWARG-ERGR--------------------HRDGSKSMANQR---PTKTLFVIN 100
R+ +E ARG RGR G S ++QR P +T F I
Sbjct: 66 --RVIIEHARGPARGRDEYRFGGEGGGGGGGRGRDGGGGGGGSRSSQRYGPPVRTEFRIV 123
Query: 101 FDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
+ + +R +D+K + G V + +N V+F T + A+E D +++
Sbjct: 124 VENLSSRVSWQDLKDYMRQAGEVTFADAHKQHKNEGIVEFATYSDMKNAVEKLDGTEING 183
Query: 156 RVISV 160
R I +
Sbjct: 184 RRIKL 188
>gi|118582269|ref|NP_001071634.1| serine/arginine-rich splicing factor 1 isoform 2 [Homo sapiens]
gi|45708738|gb|AAH33785.1| SFRS1 protein [Homo sapiens]
gi|119614895|gb|EAW94489.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_d [Homo sapiens]
gi|168277706|dbj|BAG10831.1| splicing factor, arginine/serine-rich 1 [synthetic construct]
gi|410263646|gb|JAA19789.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410308966|gb|JAA33083.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
gi|410351429|gb|JAA42318.1| serine/arginine-rich splicing factor 1 [Pan troglodytes]
Length = 201
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|115434616|ref|NP_001042066.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|54290784|dbj|BAD61423.1| putative splicing factor [Oryza sativa Japonica Group]
gi|113531597|dbj|BAF03980.1| Os01g0155600 [Oryza sativa Japonica Group]
gi|125524487|gb|EAY72601.1| hypothetical protein OsI_00466 [Oryza sativa Indica Group]
gi|215765664|dbj|BAG87361.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 324
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LF +YGR+ VDMK FAFV F D RDA +A LD F D
Sbjct: 20 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF--D 77
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 78 GSRMIVEFAKG 88
>gi|166235127|ref|NP_598686.2| RNA-binding protein 28 [Mus musculus]
gi|341942269|sp|Q8CGC6.4|RBM28_MOUSE RecName: Full=RNA-binding protein 28; AltName: Full=RNA-binding
motif protein 28
Length = 750
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+KYG I D+ + GF FV F + +A A++ L++
Sbjct: 215 VYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSEGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERDI 111
P +L V A+ + RH + K + + L+V N D + +
Sbjct: 275 SPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDEAL 333
Query: 112 KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
K+ FE +GN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 334 KKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVALA 392
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD--------MKSGFAFVYFEDDRDAADAIRGL 56
++VG+ + +S L FS G + + + G+A+V F+ ADA R +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ---PADAERAM 90
Query: 57 DNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + + I F
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRRSGAGN---------IFIKNLDKV-IDNKSIYDTF 140
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A A++ + L + + V
Sbjct: 141 SLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|355557751|gb|EHH14531.1| hypothetical protein EGK_00474, partial [Macaca mulatta]
Length = 477
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 19 LERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78
+ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ + R+ VE ARG R
Sbjct: 1 VERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE--RVIVEHARGPR- 57
Query: 79 RHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRERDIKRHFEPYGNVL 122
RDGS PT+T L V N R +D+K + G V
Sbjct: 58 --RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSWQDLKDYMRQAGEVT 114
Query: 123 HV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ + R+N ++F + + +ALE D +++ R I
Sbjct: 115 YADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 153
>gi|348518531|ref|XP_003446785.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Oreochromis
niloticus]
Length = 264
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E LF KYG I +D+K+ FAFV F+D RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRSKDVEDLFYKYGSIRDIDLKNRRGGPPFAFVQFDDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-------------------QRPTKTLFVIN 100
+ YD RL VE+ R RG G R ++ V++
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGGGGGGGGGGGGGGGGGGMGPPRGRYGPPSRRSENRVVVS 134
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 GLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 188
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLD 57
++V N EL ++F ++G + GF FV FE+ DAA A+ L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 58 NIPFGYDRRRLSVEWARGE-----------RGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G+ + + K A++ L+V N D T
Sbjct: 286 GKTF--DDK----EWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVT 339
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
++ ++ HF P+G + ++ R+ FV F T EEAT+A+ + +V + +
Sbjct: 340 DDK-LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 160 VEYA 163
V A
Sbjct: 399 VALA 402
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 30/193 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI--ERVDMKS-----------GFAFVYFEDDRD 48
S +FV N +ET + L LF G I RV K GF FV F+ +
Sbjct: 805 STTVFVKNLNFETGDNALYNLFQTCGTIRSCRVATKKNPHNPQELLSMGFGFVEFKTHAE 864
Query: 49 AADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK---TLFVINFDPIR 105
A A++ L D +L ++ + R + + G + + K T V+
Sbjct: 865 AVKAMKKLQGAEL--DGHKLELKLST--RTQQQQGPVARREGKLIKGATTKVVVRNVAFE 920
Query: 106 TRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSK-LVD 155
++DI++ F PYG+V VR+ R FAFV+F ++EEA A E+ S L
Sbjct: 921 ATKKDIRQLFTPYGDVKSVRLPPKSFDPTQHRGFAFVEFSSKEEAKSAFEALSGSTHLYG 980
Query: 156 RVISVEYALKDDS 168
R +++E+A D+S
Sbjct: 981 RRLNLEFAKDDNS 993
>gi|302828648|ref|XP_002945891.1| hypothetical protein VOLCADRAFT_72532 [Volvox carteri f.
nagariensis]
gi|300268706|gb|EFJ52886.1| hypothetical protein VOLCADRAFT_72532 [Volvox carteri f.
nagariensis]
Length = 288
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
R IFVGN + R+ EL+ +F K+GRI +D+K GFAF+ F+D R A +A R
Sbjct: 9 GRAIFVGNLPIDVREKELDEIFYKFGRIRMIDIKKPARPPGFAFIEFDDPRSAEEAARRR 68
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKS--MANQRPTKT-----LFVINFDPIRTRER 109
+N F R+ VE ARG G GS+ RP + L+V P +
Sbjct: 69 NNYEFA--GMRMRVEIARGGEG---SGSQQPLRIGYRPIRNTLGFRLYVKGL-PRSASWQ 122
Query: 110 DIKRHFEPYGNVLHVRIRRN-----FAFVQFETQEEATKALESTDRSKLVD 155
D+K L+ I ++ V+FE++++ AL D S+ +
Sbjct: 123 DLKDFVRRVCKPLYTEIFKDHRDNVLGVVEFESKDDMKAALRKLDDSEFTN 173
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAAD-AIRGLD 57
I+VG+ +T +S+L R+FS G + ++ +K S FAFV F + DAAD AI+ +
Sbjct: 14 IYVGDLSSKTLESDLFRIFSSIGEVVKIKLKKRIEPLSSFAFVTFANG-DAADRAIKEYN 72
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
N F +++ + V E+ + D + L V N T E ++ F
Sbjct: 73 N--FRLNKKNIRVLPCMDEKSKREDAN-----------LIVKNLPSSFTNE-NLYDTFSV 118
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+G ++ +I +N+ FVQF+ ++ A A++ D KL +++I VE
Sbjct: 119 FGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKLDNKIIQVE 169
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAIRGL 56
F+ NF + +LE L +KYG I + + GFAF FE A +AI+ L
Sbjct: 198 CFIKNFPESFTEKDLESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQEL 257
Query: 57 DN---IPFGYDRRRLSVE---WARGERGRHRD-------GSKSMANQRPTKTLFVINFDP 103
PF + +E + ++ R+ S+ Q + L++ N P
Sbjct: 258 HGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNI-P 316
Query: 104 IRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDR 156
+ DI F +G+++ I +R +A+V + T +EA A+E + + +
Sbjct: 317 AFIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDNN 376
Query: 157 VISVEYALKDDSER 170
++V Y K+ +ER
Sbjct: 377 KLNVTY-FKNKAER 389
>gi|308510478|ref|XP_003117422.1| CRE-RSP-2 protein [Caenorhabditis remanei]
gi|308242336|gb|EFO86288.1| CRE-RSP-2 protein [Caenorhabditis remanei]
Length = 281
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN------ 58
+++G ++E F YG++ V MK+GF FV F+D RDA DA+ L+
Sbjct: 4 VYIGRLPNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDLCGE 63
Query: 59 -IPFGYDRRRLSVEWAR---GERGRH----RDGSKSMAN--QRPTKTLFVINFDPIRTR- 107
+ + RR++ R G RGR R G + +N RP T F + D + TR
Sbjct: 64 RVILEFPRRKVGYNEERSGGGYRGREPTFRRGGERQFSNRYSRPCSTRFRLVVDNLSTRY 123
Query: 108 -ERDIKRH-----FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+DIK H EP + H R N A V F T ++ A+ +L R +
Sbjct: 124 SWQDIKDHIRKLGIEPTYSEAHKR-NVNQALVCFSTHDDLRDAMNKLQGEELNGRKLKCT 182
Query: 162 YALKD 166
+D
Sbjct: 183 DETRD 187
>gi|388509088|gb|AFK42610.1| unknown [Medicago truncatula]
Length = 305
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LER+FS+YG + VDMK +AFV F D RDA DA LD D
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDI--D 70
Query: 65 RRRLSVEWARG 75
RL VE+A+G
Sbjct: 71 GSRLIVEFAKG 81
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG+V V ++ ++AFV+F +A A + D + + VE+A
Sbjct: 21 RTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFA 79
>gi|225439817|ref|XP_002277105.1| PREDICTED: uncharacterized protein LOC100258584 [Vitis vinifera]
Length = 307
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LFS+YGR+ VDMK FAFV F D RDA DA L+ F D
Sbjct: 13 LYVGRLSSRTRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDF--D 70
Query: 65 RRRLSVEWAR 74
R+ VE+A+
Sbjct: 71 GSRIIVEFAK 80
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + +T + E +LF KYG+I + + GFAFV F A A+ L+
Sbjct: 252 VYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELN 311
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ F Y ++L V A+ + R + K + K LFV N ER
Sbjct: 312 D--FEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDER- 368
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F +G + ++ + F FV + EEATKA+ ++ L + + V A
Sbjct: 369 LKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALA 428
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKSGFAFVYFEDDRDAADAIRGLD 57
+F+ N + L FS +G+I + + G+ FV+F+ A AI ++
Sbjct: 159 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVN 218
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + +++ V R R SK A + ++V N D + T E + + FE
Sbjct: 219 GMLL--NDKKVYVGHHISRRDRQ---SKFEALKANFTNVYVKNLD-LDTTEEEFTKLFEK 272
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 149
YG + + + R FAFV F T + A +A++ +
Sbjct: 273 YGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELN 311
>gi|12860555|dbj|BAB31986.1| unnamed protein product [Mus musculus]
Length = 190
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 22 LFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76
LF KYGRI +++K+ FAFV FED RDA DAI G + +G R R+ G
Sbjct: 2 LFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGG 61
Query: 77 RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQF 135
RG G+++ R + +++ P +D+K H G+V + ++++ V++
Sbjct: 62 RGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEY 121
Query: 136 ETQEEATKALESTDRSKL 153
+E+ AL D +K
Sbjct: 122 LRKEDMEYALRKLDDTKF 139
>gi|281353447|gb|EFB29031.1| hypothetical protein PANDA_013362 [Ailuropoda melanoleuca]
Length = 316
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
R +FVG ++T + +L+ F+K+G + +K GF F+ F +DAA +
Sbjct: 54 RKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEK 110
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKR 113
LD RL GR D K+MA ++ P K +FV +P T E+ I+
Sbjct: 111 VLDQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IRE 156
Query: 114 HFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+F +G + + + RR F F+ F+ +E K LE
Sbjct: 157 YFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 197
>gi|74142527|dbj|BAE33848.1| unnamed protein product [Mus musculus]
gi|148681846|gb|EDL13793.1| RNA binding motif protein 28, isoform CRA_b [Mus musculus]
Length = 750
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>gi|281206481|gb|EFA80667.1| hypothetical protein PPL_06250 [Polysphondylium pallidum PN500]
Length = 931
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 18 ELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN-IPFGYDRRRLSVEWARGE 76
+L LF KYG+I K GF FV ++ A DAI L + + G +++ ++++ +
Sbjct: 73 DLYELFIKYGKITNHAWKIGFGFVEYQSVNQALDAISQLQSTMVMG---KKIFIDFSSSK 129
Query: 77 RGRHRDGSKSMANQRPTKTLFV-------INFDPIRTRERDIKRHFEPYGNVLHVRI--R 127
R RH P T+ IN+D T D+K F G ++H +
Sbjct: 130 RERH-----------PMSTIITPKAPRVYINYDNESTHPNDLKALFSSVGEIIHNHFVDK 178
Query: 128 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+ + FV++ T EEA +A+ ++ +R + V YA
Sbjct: 179 KGYGFVEYATVEEAERAISQYHGYEIHNRKLLVNYA 214
>gi|241849002|ref|XP_002415663.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
gi|215509877|gb|EEC19330.1| alternative splicing factor ASF/SF2, putative [Ixodes scapularis]
Length = 223
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E LF K+G+I +D+K+ FAFV FED RDA DA D
Sbjct: 10 IYVGNLPPDIRTKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFEDPRDAEDAAHARDG-- 67
Query: 61 FGYDRRRLSVEWARGE---RGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YD RL VE+ RG RG G R ++ +++ P +D+K H
Sbjct: 68 YDYDGYRLRVEFPRGSAPGRGGMGPGRGRGPPARRSQYRVLVSGLPPSGSWQDLKDHMRE 127
Query: 118 YGNVLHVRIRRN----FAFVQFETQEEATKALEST 148
G+V + + ++ F+++E + A K L+ +
Sbjct: 128 AGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDS 162
>gi|12850171|dbj|BAB28620.1| unnamed protein product [Mus musculus]
Length = 233
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>gi|147907282|ref|NP_001079543.1| keratin 5, gene 1 b [Xenopus laevis]
gi|28278124|gb|AAH44085.1| MGC52712 protein [Xenopus laevis]
Length = 261
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+G R+ ++E+ F YGRI +++K+GF FV F+D RDA DA+ L+ +
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGKVLCSE 65
Query: 65 RRRLSVEWARGERGRHRDG----------------SKSMANQR---PTKT---LFVINFD 102
R+++E AR RGR S S N R P +T + V N
Sbjct: 66 --RVTIEHARNHRGRGGMMGGGGGGRYPNRFAYRQSNSGGNSRYGPPVRTEHRIIVENLS 123
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
R +D+K G V +V R RN V+F + + AL+ D +L R I
Sbjct: 124 S-RVSWQDLKGFMRKAGEVTYVDAHRSNRNEGVVEFASYTDMKSALDKLDGVELSGRKIK 182
Query: 160 V 160
+
Sbjct: 183 L 183
>gi|166091440|ref|NP_001107213.1| serine/arginine-rich splicing factor 1 [Gallus gallus]
Length = 248
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|222617767|gb|EEE53899.1| hypothetical protein OsJ_00434 [Oryza sativa Japonica Group]
Length = 377
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LF +YGR+ VDMK FAFV F D RDA +A LD F D
Sbjct: 73 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF--D 130
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 131 GSRMIVEFAKG 141
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + E E E+LF +G I + D KS GF FV +E A A+ L+
Sbjct: 110 IYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELN 169
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K + R + LFV N D E+
Sbjct: 170 DKEI--NGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSEK- 226
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G++ ++ + F FV F + EEATKA+ ++ ++ + + V A
Sbjct: 227 LEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALA 286
Query: 164 LKDDSER 170
+ D R
Sbjct: 287 QRKDVRR 293
>gi|397525476|ref|XP_003832692.1| PREDICTED: serine/arginine-rich splicing factor 9 [Pan paniscus]
Length = 274
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 8 GNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNIPFG 62
GN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G + +
Sbjct: 72 GNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG--YD 129
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEPYGN 120
Y + RL VE+ R GR ++ F +++ P +D+K H G+
Sbjct: 130 YGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGD 189
Query: 121 VLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
V + ++++ V++ +E+ AL D +K
Sbjct: 190 VCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 223
>gi|354470655|ref|XP_003497560.1| PREDICTED: RNA-binding protein 28 isoform 1 [Cricetulus griseus]
Length = 707
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------------FVINFD 102
++ +++V A+ + + N K +I
Sbjct: 66 TT----FEGCKINVTVAKKKLKNKSKEKRKNENSESPKKEPKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F PYG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTAFTPYGTVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDR 173
R ++V++A+ D +D +
Sbjct: 182 RTVAVDWAVAKDKYKDTQ 199
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+KYG I D+ + GF FV F + +A A++ L++
Sbjct: 33 VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALND 92
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERDI 111
P +L V A+ + RH + K + + L+V N D + +
Sbjct: 93 SPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDEAL 151
Query: 112 KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
K+ FE +GN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 152 KKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALA 210
>gi|341888855|gb|EGT44790.1| CBN-RSP-2 protein [Caenorhabditis brenneri]
gi|341896980|gb|EGT52915.1| hypothetical protein CAEBREN_32319 [Caenorhabditis brenneri]
Length = 283
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 24/179 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN------ 58
+++G ++E F YG++ V MK+GF FV F+D RDA DA+ L+
Sbjct: 4 VYIGRLPNRATDRDVEHFFRGYGKLVDVIMKNGFGFVDFQDQRDADDAVHDLNGKDLCGE 63
Query: 59 -IPFGYDRRRLSVEWAR---GERGRH----RDGSKSMAN--QRPTKTLFVINFDPIRTR- 107
+ + RR++ R G RGR R G + +N RP T F + D + TR
Sbjct: 64 RVILEFPRRKVGYNEERSGSGYRGREPTFRRGGERQFSNRYSRPCSTRFRLVIDNLSTRF 123
Query: 108 -ERDIKRH-----FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+DIK H EP + H R N A V F T ++ +A+ +L R +
Sbjct: 124 SWQDIKDHIRKLGIEPTYSEAHKR-NVNQALVCFSTHDDLREAMNKLQGEELNGRKLKC 181
>gi|348562137|ref|XP_003466867.1| PREDICTED: serine/arginine-rich splicing factor 1-like isoform 1
[Cavia porcellus]
gi|380788319|gb|AFE66035.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
gi|383420723|gb|AFH33575.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
gi|384941914|gb|AFI34562.1| serine/arginine-rich splicing factor 1 isoform 2 [Macaca mulatta]
Length = 201
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|417397107|gb|JAA45587.1| Putative serine/arginine-rich splicing factor 1 isoform 2 [Desmodus
rotundus]
Length = 207
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|336088099|dbj|BAK39909.1| splicing factor, arginine/serine-rich 1, transcript variant 2
[Cricetulus griseus]
Length = 201
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
D+K H G+V + + R+ V+F +E+ T A+ D +K + + L
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEVGYTFIL 191
>gi|255644623|gb|ACU22814.1| unknown [Glycine max]
gi|255644635|gb|ACU22820.1| unknown [Glycine max]
gi|255644651|gb|ACU22828.1| unknown [Glycine max]
gi|255648053|gb|ACU24482.1| unknown [Glycine max]
Length = 167
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LER FS+YGR+ VDMK+ FAFV F D RDA DA LD D
Sbjct: 13 LYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDV--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++ +FAFV F +A A + D + I VE+A
Sbjct: 21 RTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFA 79
>gi|359486310|ref|XP_002281756.2| PREDICTED: uncharacterized protein LOC100251921 [Vitis vinifera]
Length = 304
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LFS+YGR+ VDMK FAFV F D RDA DA L+ F D
Sbjct: 13 LYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF--D 70
Query: 65 RRRLSVEWAR 74
R+ VE+A+
Sbjct: 71 GSRIIVEFAK 80
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++ F YG V V ++ +FAFV+F +A A S + I VE+A
Sbjct: 21 RTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDFDGSRIIVEFA 79
>gi|344242066|gb|EGV98169.1| RNA-binding protein 28 [Cricetulus griseus]
Length = 778
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------------FVINFD 102
++ +++V A+ + + N K +I
Sbjct: 66 TT----FEGCKINVTVAKKKLKNKSKEKRKNENSESPKKEPKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F PYG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTAFTPYGTVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDR 173
R ++V++A+ D +D +
Sbjct: 182 RTVAVDWAVAKDKYKDTQ 199
>gi|45433540|ref|NP_956887.2| serine/arginine-rich splicing factor 1B [Danio rerio]
gi|71162369|sp|Q6NYA0.1|SRS1B_DANRE RecName: Full=Serine/arginine-rich splicing factor 1B; AltName:
Full=Splicing factor, arginine/serine-rich 1; AltName:
Full=Splicing factor, arginine/serine-rich 1B
gi|44890669|gb|AAH66682.1| Splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor) [Danio rerio]
Length = 245
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 179
>gi|307203784|gb|EFN82720.1| Splicing factor, arginine/serine-rich 1 [Harpegnathos saltator]
Length = 193
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 11 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 68
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ ++
Sbjct: 69 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTG 128
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISV 160
P +D+K H G+V + ++ V+F ++ A++ D S+ +S+
Sbjct: 129 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHDDMKYAVKKLDDSRFRSHEVSI 188
>gi|198432543|ref|XP_002131859.1| PREDICTED: similar to splicing factor, arginine/serine-rich 1
[Ciona intestinalis]
Length = 235
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
++VGN + R+ ++E LF KYG I V++K+ FAFV FED RDA D++ G +
Sbjct: 11 VYVGNLPPDVREKDVEDLFYKYGSIRHVNLKNRRGPPFAFVEFEDRRDAEDSVHGRNG-- 68
Query: 61 FGYDRRRLSVEWARGERGRHRDG-------SKSMANQRPTKTLFVINFDPIRTRERDIKR 113
+ +D +L VE RG R ++ R T +++ P +D+K
Sbjct: 69 YNFDGYKLRVEHPRGNGPSQRPAYGMSSFRARGGPPSRRTDFRVMVSGLPPTGSWQDLKD 128
Query: 114 HFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
H G+V + + R+ V+F +++ A++ D +K
Sbjct: 129 HMREAGDVCYADVYRDGTGVVEFVNRDDMQFAVKHLDDTKF 169
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV-------------DMKSGFAFVYFEDDRD 48
S +FV N ++T + L F G I V + GF FV ++ +D
Sbjct: 901 SSSVFVKNLHFDTDEDALRHHFEGIGPIRSVRVARKPNPKEPSRPLSMGFGFVEYKSRQD 960
Query: 49 AADAIRGLDNIPFGYDRRRLSVEWARGERG------RHRDGSKSMANQRPTKTLFVINFD 102
A AI+ L G + ++E ER R R G K A + L V N
Sbjct: 961 AVRAIKML----HGSSLQEHTLELKMSERTGAPLTKRERQGKKMKAK---SNKLVVRNI- 1012
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLV 154
+++++ F P+GN++ VR+ R FAF++F T++EA A + + L
Sbjct: 1013 AFEATPKEVQQLFSPHGNIVSVRLPRKQYDGTHRGFAFIEFSTKQEARDAFSALSGTHLY 1072
Query: 155 DRVISVEYALKDDS 168
R +++E+A D+S
Sbjct: 1073 GRRLAMEFAEDDES 1086
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK--------SGFAFVYFEDDRDAADAIRGL 56
+FV N Y R+ EL LF +G + + M GFAF+ F A+ A + L
Sbjct: 541 LFVRNLPYACREDELRELFEAFGPLSELHMPIDGETKKPKGFAFITFVLPEHASQAFQNL 600
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD 82
DN F R L V AR + G D
Sbjct: 601 DNTIF--QGRLLHVLPARHKPGTDAD 624
>gi|115448333|ref|NP_001047946.1| Os02g0719800 [Oryza sativa Japonica Group]
gi|75325622|sp|Q6ZI17.1|OML2_ORYSJ RecName: Full=Protein MEI2-like 2; Short=OML2; AltName:
Full=MEI2-like protein 2
gi|45735834|dbj|BAD12869.1| putative meiosis protein mei2 [Oryza sativa Japonica Group]
gi|88193635|dbj|BAE79764.1| MEI2-like RNA binding protein [Oryza sativa Japonica Group]
gi|113537477|dbj|BAF09860.1| Os02g0719800 [Oryza sativa Japonica Group]
gi|215767055|dbj|BAG99283.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 848
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + + GF + + D R A A+RGL N
Sbjct: 196 SRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQN 255
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 256 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 305
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G V +R +++ F++F A AL S ++S++ + I +E +
Sbjct: 306 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQ 365
Query: 164 LKDDSERDD--RYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
L D ++D+ Y P G SP SP A+ + SP
Sbjct: 366 LGHDIDQDEPRSYRIPHVG-----SPIASSPPGAWAQYSSP 401
>gi|357149210|ref|XP_003575037.1| PREDICTED: protein MEI2-like 4-like [Brachypodium distachyon]
Length = 987
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL+ +F YG I + GF + + D R A +A+R L N
Sbjct: 276 SRTLFVRNINSNVEDSELKLIFEHYGDIRTLYTACKHRGFVMISYYDIRSARNAMRALQN 335
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP T + D++R F Y
Sbjct: 336 KPL--RRRKLDIHYSIPK----DNPSEKDVNQ---GTLVVFNVDPSVTND-DLRRIFGGY 385
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD 175
G + +R + + ++F A AL + +R+ + + I +E + + R ++
Sbjct: 386 GEIKEIRDTTQKGHHKIIEFYDIRGAESALRALNRNDIAGKKIKLESSHLGGTRRLMQHL 445
Query: 176 SPRRGG-----YGRHSPYGRSPSPA 195
SP G Y SP SPS A
Sbjct: 446 SPELGQEEFGVYKLGSPSTSSPSMA 470
>gi|357110952|ref|XP_003557279.1| PREDICTED: protein MEI2-like 2-like [Brachypodium distachyon]
Length = 845
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF ++G I + + GF + + D R A A+R L N
Sbjct: 197 SRTLFVRNINSNVEDSELRSLFEQFGDIRTLYTATKHRGFVMISYFDIRAARGAMRSLQN 256
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E D+++ F Y
Sbjct: 257 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-DVRQIFGAY 306
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G V +R +++ F++F A AL S ++S++ + I +E +
Sbjct: 307 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRSLVQQ 366
Query: 164 LKDDSERDD--RYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
L + E+D+ Y +P G SP SP A+ + SP
Sbjct: 367 LGHELEQDEPRSYRNPHIG-----SPMANSPPGAWAQYGSP 402
>gi|443724659|gb|ELU12563.1| hypothetical protein CAPTEDRAFT_175470 [Capitella teleta]
Length = 321
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS I+VG Y R+ ++ER F YGRI V +K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSGRIYVGRLSYSVRERDIERFFRNYGRIVDVLLKNGYGFVEFDDYRDADDAVYELNGKE 60
Query: 61 FGYDRRRLSVEWARGERGRH--------------------------RDGSKSMANQRPTK 94
+ R+ +E ARG + + GS+ R
Sbjct: 61 LCGE--RVVIEHARGPNRKDDRDGGYRDRGDRGGGRGGGRQPGWMDKSGSRYGPPARTEY 118
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRS 151
L V N R +D+K + G V + + +N V+F ++ + ALE D +
Sbjct: 119 RLVVENLSS-RVSWQDLKDYMRQAGEVTYADAHKQHKNEGIVEFSSRADMKTALEKLDDT 177
Query: 152 KLVDRVI 158
++ R I
Sbjct: 178 EINGRRI 184
>gi|82233969|sp|Q5ZML3.3|SRSF1_CHICK RecName: Full=Serine/arginine-rich splicing factor 1; AltName:
Full=Splicing factor, arginine/serine-rich 1
gi|53127294|emb|CAG31030.1| hypothetical protein RCJMB04_1l5 [Gallus gallus]
Length = 257
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 24/181 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIER------VDMKS-GFAFVYFEDDRDAADAIRGLD 57
+++ NF E + LE+LF K+G+I D KS GF FV FE+ DA A+ +
Sbjct: 201 VYIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMH 260
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
R+L V A+ + R + + Q+ + L+V N D T D
Sbjct: 261 EYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDD--TVNDD 318
Query: 111 I-KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
I K++FE YG + ++ + F FV FE +EATKA+ + + + + V
Sbjct: 319 ILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVAL 378
Query: 163 A 163
A
Sbjct: 379 A 379
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGL 56
++VG+ + ++ L FS G + + + G+A+V F+ ADA R L
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQ---PADAERAL 76
Query: 57 DNIPFGYDRRR-LSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + I F
Sbjct: 77 DTMNFDMMYGKPIRIMWSQRDPSMRRSGAGN---------IFIKNLDK-SIDNKAIYDTF 126
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A KA+E + L + + V
Sbjct: 127 SMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|12323530|gb|AAG51742.1|AC068667_21 RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis
thaliana]
Length = 779
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 157 SRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQN 216
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP + + D+ F +
Sbjct: 217 KPL--RRRKLDIHFSIPK----DNPSEKDMNQ---GTLVVFNLDPSISND-DLHGIFGAH 266
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE------------YA 163
G + +R +R+ FV+F A AL++ +R ++ + I VE
Sbjct: 267 GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQ 326
Query: 164 LKDDSERDDRYDSPRRGGYGRHSPYGRSP 192
L D E DD + P G SP SP
Sbjct: 327 LNQDLENDDLHYLPMIG-----SPMANSP 350
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + E + E E LFS++G I ++ GF FV FE+ DA A+ LD
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELD 316
Query: 58 NI-----PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
N P R + E R ++ A + L++ N + E+ ++
Sbjct: 317 NKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDEK-LR 375
Query: 113 RHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
FEP+G + ++ R+ F FV F + +EAT+A+ + + + + V A +
Sbjct: 376 AEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQR 435
Query: 166 DD 167
D
Sbjct: 436 KD 437
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L F+ +G + + + G+ FV+++ + A AI+ ++
Sbjct: 164 IFIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVN 223
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + +R ER D KS L+V N D E + + F
Sbjct: 224 GMLLNDKKVFVGQHISRKERQSKIDEMKSHFT-----NLYVKNLD-TEVGEEEFEGLFSQ 277
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+G + I+++ F FV FE E+A +A+E D ++ + + V A K SER
Sbjct: 278 FGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQK-KSER 336
Query: 171 DDRY 174
++
Sbjct: 337 EEEL 340
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
+FV NF E S + FS YG I V S F +V F A+ AI L+
Sbjct: 863 LFVTNFPEEWDDSSIRSTFSPYGLIFNVRWPSKRFSSSRRFCYVQFTTPSSASAAIEALN 922
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ R L+V + R + R S AN+ K LFV P + ++K +FE
Sbjct: 923 GKEVA-EGRTLNVALSDPSRRKQR----SDANEN-AKELFVSGL-PRNITDEELKTYFEA 975
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
YG V VR+ RN FV FE +AT+A++ + +K + ISV A
Sbjct: 976 YGKVTGVRLLRNAEGGLRGIGFVDFENALDATRAMKELNSTKWRAKTISVTLA------- 1028
Query: 171 DDRYDSPRRGGYG 183
D R + ++ G G
Sbjct: 1029 DSRSSNSKQSGVG 1041
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGLDN 58
++V NF + LE+LF+KYG I D+ + GF FV F + +A A++ L++
Sbjct: 215 VYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERDI 111
P +L V A+ + RH + K + + L+V N D + +
Sbjct: 275 SPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDE-SVDDEAL 333
Query: 112 KRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
K+ FE +GN+ ++ + F FV FE EEAT A+ + + + + V A
Sbjct: 334 KKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALA 392
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD--------MKSGFAFVYFEDDRDAADAIRGL 56
++VG+ + +S L FS G + + + G+A+V F+ ADA R +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP---ADAERAM 90
Query: 57 DNIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
D + F + + + W++ + R G+ + +F+ N D + + I F
Sbjct: 91 DTMNFEALHGKPMRIMWSQRDPAMRRSGAGN---------IFIKNLDKV-IDNKSIYDTF 140
Query: 116 EPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN+L ++ + + FV FET+E A A++ + L + + V
Sbjct: 141 SLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|158260889|dbj|BAF82622.1| unnamed protein product [Homo sapiens]
Length = 248
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED +DA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPQDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGAVEFVRKEDMTYAVRKLDNTKF 180
>gi|67605110|ref|XP_666661.1| cutinase negative acting protein [Cryptosporidium hominis TU502]
gi|54657695|gb|EAL36429.1| cutinase negative acting protein [Cryptosporidium hominis]
Length = 475
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--GFAFVYFEDDRDAADAIRGLDNI 59
SR ++ GN Y + E+ LF + G IERV + S G AF+ FE + A AI+
Sbjct: 270 SREVYCGNLPYSCTEEEIRGLFEECGSIERVSVLSDKGCAFITFEQEEGAKSAIQWNQT- 328
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
Y R L + + + + GS S P ++ V N P + + IK F G
Sbjct: 329 --EYKGRMLRINMS---ADKPQPGSLSSGGYGP--SVIVRNI-PFSSDDESIKSFFNGCG 380
Query: 120 NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
V V I R FA V+FE E+ AL+ + S + R +++E AL
Sbjct: 381 VVKRVSIPRYSDTGKMRGFAMVEFENDEQIQNALKLSGTS-MNGREVTIEIAL 432
>gi|195038647|ref|XP_001990768.1| GH18077 [Drosophila grimshawi]
gi|193894964|gb|EDV93830.1| GH18077 [Drosophila grimshawi]
Length = 252
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RGRHRDGSKSMAN----------QRPTKTLFVINFDPIR 105
+ YD RL VE+ RG RG +R+ +R + V P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGNNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGL-PGS 125
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKLVDRVISVEYA- 163
+D+K H G+V ++ + V+F E+ A++ D S+ V Y
Sbjct: 126 GSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIR 185
Query: 164 LKDDSERDDR 173
+++DS ++R
Sbjct: 186 VREDSGDNER 195
>gi|391339441|ref|XP_003744058.1| PREDICTED: uncharacterized protein LOC100905097 [Metaseiulus
occidentalis]
Length = 355
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 18/181 (9%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MS +FVG+ + + ++E F + GRI V K +AFV F D+RDA DAI L+
Sbjct: 1 MSARVFVGHLPRKVDRRDIEDYFDRIGRIRDVVHKGNYAFVEFADERDARDAISELNGTS 60
Query: 61 FGYDRRRLSVEWAR-------------GERGRHRDGSKSMANQRPTKTLFVINFDPIRTR 107
+ + R+ VE A G R + G + R T I R
Sbjct: 61 WKGE--RIIVELANRRRRSRSQSGDRRGRNPRRKPGRITRGPPRRTDYQISIKNLSTRVS 118
Query: 108 ERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+D+K F V++ RRN+ V+F+T+EE + E + R I +E +
Sbjct: 119 WQDLKDIFGEVAKVVYADAHNKRRNYGIVEFDTKEEMNRCYEKFNGKSFNGRKIEMELNV 178
Query: 165 K 165
K
Sbjct: 179 K 179
>gi|118582271|ref|NP_001071635.1| serine/arginine-rich splicing factor 1 isoform 2 [Mus musculus]
gi|26347437|dbj|BAC37367.1| unnamed protein product [Mus musculus]
Length = 201
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
+++ N ET + E E F K + V ++ GF FV +E AA A+ L+
Sbjct: 224 VYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELN 283
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ F ++L V A+ + R ++ + + K LF+ N D ER
Sbjct: 284 GVEF--HGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDER- 340
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F P+G + V++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 341 LREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 400
Query: 164 LKDDSER 170
+ D R
Sbjct: 401 QRKDVRR 407
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
IF+ N + L FS +G I + + GF FV+FE D A +AI +
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ + ++ +R +R + +K AN +++ N + T E++ + F+
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKLEEAK--AN---FTNVYIKNIS-LETPEQEFEEFFK 243
Query: 117 PYGNVLHVRIR-------RNFAFVQFETQEEATKALESTD 149
V V + R F FV +ET A KA+E +
Sbjct: 244 KVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELN 283
>gi|209155162|gb|ACI33813.1| Splicing factor, arginine/serine-rich 5 [Salmo salar]
Length = 316
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVG R+ ++ER F YGRI +D+K GF FV F+D RDA DA+ LD +
Sbjct: 6 IFVGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCNE 65
Query: 65 RRRLSVEWAR 74
R+++E AR
Sbjct: 66 --RVTIEHAR 73
>gi|30690712|ref|NP_174233.2| MEI2-like protein 5 [Arabidopsis thaliana]
gi|30690716|ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana]
gi|75331078|sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName:
Full=MEI2-like protein 5
gi|17065074|gb|AAL32691.1| RNA-binding protein MEI2, putative [Arabidopsis thaliana]
gi|17979281|gb|AAL49866.1| putative RNA-binding protein MEI2 [Arabidopsis thaliana]
gi|20259101|gb|AAM14266.1| putative RNA-binding protein MEI2 [Arabidopsis thaliana]
gi|332192961|gb|AEE31082.1| MEI2-like protein 5 [Arabidopsis thaliana]
gi|332192962|gb|AEE31083.1| MEI2-like protein 5 [Arabidopsis thaliana]
Length = 800
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQN 226
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP + + D+ F +
Sbjct: 227 KPL--RRRKLDIHFSIPK----DNPSEKDMNQ---GTLVVFNLDPSISND-DLHGIFGAH 276
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE------------YA 163
G + +R +R+ FV+F A AL++ +R ++ + I VE
Sbjct: 277 GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQ 336
Query: 164 LKDDSERDDRYDSPRRGGYGRHSPYGRSP 192
L D E DD + P G SP SP
Sbjct: 337 LNQDLENDDLHYLPMIG-----SPMANSP 360
>gi|147774947|emb|CAN60012.1| hypothetical protein VITISV_036556 [Vitis vinifera]
Length = 306
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LFS+YGR+ VDMK FAFV F D RDA DA L+ F D
Sbjct: 13 LYVGRLSSRTRTRDLESLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYNLNGRDF--D 70
Query: 65 RRRLSVEWAR 74
R+ VE+A+
Sbjct: 71 GSRIIVEFAK 80
>gi|432882989|ref|XP_004074178.1| PREDICTED: uncharacterized protein LOC101163182 isoform 2 [Oryzias
latipes]
Length = 384
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 32/186 (17%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDRRRLSVEWARGERGRH----------RDGSKSMANQR------------PTKT--- 95
+ R+ VE +G R ++ S+S N P +T
Sbjct: 60 LCGE--RVIVEHTKGPRRDGGYGGGGRNLDQESSRSSKNGGYGRWGGRDRYGPPVRTDYR 117
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSK 152
L V N R +D+K + G V + + RRN ++F + +ALE D ++
Sbjct: 118 LIVENLSS-RCSWQDLKDYMRQAGEVTYADTHKGRRNEGVIEFRQYSDMKRALEKLDGTE 176
Query: 153 LVDRVI 158
+ R I
Sbjct: 177 VNGRKI 182
>gi|148228289|ref|NP_001088400.1| serine/arginine-rich splicing factor 9 [Xenopus laevis]
gi|54261635|gb|AAH84289.1| LOC495254 protein [Xenopus laevis]
Length = 230
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDN 58
I+VGN + R+ ELE LF +YGRI V++K + FAF+ ++D RDA DA+ G +
Sbjct: 18 IYVGNLPSDIREKELEDLFDRYGRIRTVELKNRGGSSAPFAFISYQDPRDAEDAVFGRNG 77
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMAN--------QRPTKTLFVINFDPIRTRERD 110
FG R R+ + G G R ++ +++ P +D
Sbjct: 78 YDFGSCRLRVEFPRSFRGSGGGGGGGGGYGGSRGRNGPPSRRSEYRVIVSGLPPSGSWQD 137
Query: 111 IKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+K H G+V + + ++ V+F +E+ AL D +K
Sbjct: 138 LKDHMREAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKF 181
>gi|402899743|ref|XP_003912847.1| PREDICTED: serine/arginine-rich splicing factor 1 [Papio anubis]
Length = 375
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 145 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 203
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 204 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 262
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 263 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 307
>gi|328767259|gb|EGF77309.1| hypothetical protein BATDEDRAFT_32353 [Batrachochytrium
dendrobatidis JAM81]
Length = 179
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
+F+G + R S+LE +F KYG+I R D+K G F FV +ED RDA +A++
Sbjct: 2 LFIGRVPEDARSSDLEDIFRKYGKIIRCDVKHGASVSFGFVEYEDKRDAEEAVKAGQETE 61
Query: 61 FGYDRRRLSVEWAR--GERGRHR 81
F ++ ++ VEWA+ G RG R
Sbjct: 62 FEFNGAKMYVEWAKAGGRRGGER 84
>gi|296412014|ref|XP_002835723.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629512|emb|CAZ79880.1| unnamed protein product [Tuber melanosporum]
Length = 342
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 40/267 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK--SGFAFVYFEDDRDAADAIRGLDNIPFG 62
+++GN + R+ E+E F ++G V++K +GF F+ ++ + DA D + F
Sbjct: 10 LYLGNLHKDARKQEVEDFFKEHGSGNVVEIKLMNGFGFIQYDSEADAKDVVPAYHGRDF- 68
Query: 63 YDRRRLSVEWARGERG--RHRD--GSKSMANQRPTKTLFVINFDPIR--TRERDIKRHFE 116
+ L+V++ARG R RH D G RP +T F +N + T +D+K
Sbjct: 69 -KGQPLTVQFARGSRHNPRHHDFPGGADRTFPRPRRTAFRMNISGLNPDTSWQDLKDFAR 127
Query: 117 PYGNVL----HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDD 172
G+ + R R V+FET ++ +A+ DR++ +S + D
Sbjct: 128 KSGSDVVFSEVTRERDGRGMVEFETHDDLRRAVAFLDRTEFKGTQVSCTPDVLAD----- 182
Query: 173 RYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRR--SPDHG- 229
+D PR G GR S SP RR SP+ RG Y+ P RR SP G
Sbjct: 183 -HDVPRGHGPGRRSV---SPRGYGGRRYSPNPSRG-------YHSPPRHSRRYESPSRGY 231
Query: 230 RHRSP----VPVYDRRRSPDYGRNRSP 252
R RSP P Y+ GR+RSP
Sbjct: 232 RERSPRGGREPYYN---GGGGGRDRSP 255
>gi|354470657|ref|XP_003497561.1| PREDICTED: RNA-binding protein 28 isoform 2 [Cricetulus griseus]
Length = 746
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------------FVINFD 102
++ +++V A+ + + N K +I
Sbjct: 66 TT----FEGCKINVTVAKKKLKNKSKEKRKNENSESPKKEPKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F PYG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTAFTPYGTVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDR 173
R ++V++A+ D +D +
Sbjct: 182 RTVAVDWAVAKDKYKDTQ 199
>gi|289739445|gb|ADD18470.1| alternative splicing factor ASF/SF2 [Glossina morsitans morsitans]
Length = 236
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWAR-GERGRHRDGSKSMANQR------------PTKTL---FVINFDPI 104
+ YD RL VE+ R G R HR+ + + PTK ++ P
Sbjct: 67 YDYDGYRLRVEFPRGGGRNEHRNNRGNERGNQREGGRGGGGRGPPTKRSQYRVLVTGLPS 126
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ V+F E+ A++ D S+
Sbjct: 127 SGSWQDLKDHMREAGDVCFADTYKDGTGVVEFLRHEDMKYAIKKLDDSRF 176
>gi|63101956|gb|AAH95586.1| Sfrs1 protein [Danio rerio]
gi|182889684|gb|AAI65510.1| Sfrs1 protein [Danio rerio]
Length = 258
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGQPFAFVEFEDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 179
>gi|340711111|ref|XP_003394124.1| PREDICTED: hypothetical protein LOC100642196 [Bombus terrestris]
Length = 4376
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R +F+GN E + SEL + F +G I +D+K S +AF + D A+R +
Sbjct: 467 TRTLFIGNLEKDVTASELRKHFEPFGEIIEIDIKKQGAVSSYAFCQYSDIGSVVKAMRSM 526
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D G +R +L KSM PT ++V + E+ + F
Sbjct: 527 DGEHLGANRIKLGF-------------GKSM----PTSCVWVDGIGDCMS-EKYLNMQFH 568
Query: 117 PYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
+G + V + R A V FE A A++ + L R + V++A ++ E Y
Sbjct: 569 QFGLINQVVVDRERGHALVFFEQISCAQAAVKEMRGAALRGRRLQVDFASRECQET--FY 626
Query: 175 DSPRRGGYGRHSPYGRSPSPA 195
+ R G P+ PSPA
Sbjct: 627 EHLERQGIAGEKPWDTRPSPA 647
>gi|1814274|gb|AAC50956.1| ABBP-1 [Homo sapiens]
Length = 331
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 126
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P E I+ +F
Sbjct: 127 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYF 173
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 174 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212
>gi|313227405|emb|CBY22552.1| unnamed protein product [Oikopleura dioica]
Length = 318
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 56/220 (25%)
Query: 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
+++G R +++ F YGRI + +K+ +AFV FED+RDAADA++ LD+
Sbjct: 7 SVWMGGLPERVRSRDIDDFFKGYGRIVDISIKTKYAFVEFEDERDAADAVKDLDDQKLNG 66
Query: 64 DRRRLSV---------EWARGERGRHRDGSKSMANQR----------------------- 91
R RL V ++ R R R+R SKS++ R
Sbjct: 67 SRVRLEVSKGCKDKYRDFQRTGRVRYRSYSKSVSPGRRRHRSRSPVGKGRSRSRSPARGS 126
Query: 92 -----------------PTKTLFVINFDPIRTR--ERDIKRHFEPYGNVLH-----VRIR 127
P KT + + D + +R +D+K G V + I
Sbjct: 127 DRRETFYSKPAYKKYGAPEKTRWTVEVDNLSSRCSWQDLKDFMRKAGEVTYGDAHGSDIG 186
Query: 128 RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
RN V +E +++A +A+E D + R + + + ++++
Sbjct: 187 RNRGVVCYEREDDAKRAIEELDGREFNGRDVKLAFKVREE 226
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
P R R RDI F+ YG ++ + I+ +AFV+FE + +A A++ D KL + +E
Sbjct: 14 PERVRSRDIDDFFKGYGRIVDISIKTKYAFVEFEDERDAADAVKDLDDQKLNGSRVRLEV 73
Query: 163 ALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRR-RPSPDYGRGRS------------ 209
+ D+Y +R G R+ Y +S SP RR R G+GRS
Sbjct: 74 S----KGCKDKYRDFQRTGRVRYRSYSKSVSPGRRRHRSRSPVGKGRSRSRSPARGSDRR 129
Query: 210 ------PAYDRYNGP 218
PAY +Y P
Sbjct: 130 ETFYSKPAYKKYGAP 144
>gi|339244049|ref|XP_003377950.1| splicing factor, arginine/serine-rich 1 [Trichinella spiralis]
gi|316973185|gb|EFV56805.1| splicing factor, arginine/serine-rich 1 [Trichinella spiralis]
Length = 300
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 21/182 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R ++E F ++G++ VD+K+ FAFV FED RDA DA+R D
Sbjct: 12 IYVGNLPPDIRSRDIESCFERFGKVVAVDLKNRKGPPFAFVEFEDARDAEDAVRYKDG-- 69
Query: 61 FGYDRRRLSVEWARGERGRH------------RDGSKSMANQRPTKTLFVINFDPIRTRE 108
+ D +L VE+ RG G H R+G ++ A+ R T I+ P
Sbjct: 70 YELDGYKLRVEFPRGS-GVHPGYNQRNRMLAGRNGCRTNAS-RHTGFRCYISGLPASGSW 127
Query: 109 RDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167
+D+K H G+V + +N V++ E+ AL + + S+ +V +KD+
Sbjct: 128 QDLKDHMREAGDVCFSDVYKNGNGVVEYMRAEDLEYALANLNESRFRSHEYTVNVNIKDE 187
Query: 168 SE 169
+
Sbjct: 188 MQ 189
>gi|354470659|ref|XP_003497562.1| PREDICTED: RNA-binding protein 28 isoform 3 [Cricetulus griseus]
Length = 761
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL--------------FVINFD 102
++ +++V A+ + + N K +I
Sbjct: 66 TT----FEGCKINVTVAKKKLKNKSKEKRKNENSESPKKEPKPKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F PYG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKTAFTPYGTVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Query: 156 RVISVEYALKDDSERDDR 173
R ++V++A+ D +D +
Sbjct: 182 RTVAVDWAVAKDKYKDTQ 199
>gi|297736448|emb|CBI25319.3| unnamed protein product [Vitis vinifera]
Length = 278
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LFS+YGR+ VDMK FAFV F D RDA DA L+ F D
Sbjct: 45 LYVGRLSSRTRSRDLEDLFSRYGRVRDVDMKHDFAFVEFSDPRDADDARYSLNGRDF--D 102
Query: 65 RRRLSVEWAR 74
R+ VE+A+
Sbjct: 103 GSRIIVEFAK 112
>gi|115460478|ref|NP_001053839.1| Os04g0611500 [Oryza sativa Japonica Group]
gi|113565410|dbj|BAF15753.1| Os04g0611500, partial [Oryza sativa Japonica Group]
Length = 536
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFS---KYGRIERVDMKS----------GFAFVYFEDDRD 48
SR +FV N ++T L++ FS K G ++ +K GF FV F+
Sbjct: 313 SRSVFVKNLNFKTSDESLKQHFSTKLKSGSLKSATVKKHIKNGKNVSMGFGFVEFDSVET 372
Query: 49 AADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
A + L D L ++ G +DG + + T ++ E
Sbjct: 373 ATSVCKDLQGTVL--DGHALILQLCHG----RKDGQTKKNEKDKSSTKLLVRNVAFEATE 426
Query: 109 RDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
+D+++ F P+G + +R+ R FAFV+F T++EA AL++ + L R + +E
Sbjct: 427 KDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEFVTKQEAQNALQALASTHLYGRHLVIER 486
Query: 163 A 163
A
Sbjct: 487 A 487
>gi|116787926|gb|ABK24693.1| unknown [Picea sitchensis]
Length = 476
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGR-IERVDMKS-------GFAFVYFEDDRDAADAIRGL 56
IF+G +ET + L FSKYG ++ V MK GF FV F D A++
Sbjct: 8 IFIGGISWETSEERLRDYFSKYGEVVQTVIMKDRLTGRARGFGFVVFSDPSIVDIALQEK 67
Query: 57 DNIPFGYDRRRLSVEWA--RGERGRHRDGSKSMANQRP-------TKTLFVINFDPIRTR 107
I D R + + A R E+ R S + + + TK +FV P
Sbjct: 68 HTI----DGRAVEAKKAVPRSEQQNTRTNSYNNNDSQGYGGGSVRTKKIFVGGL-PANLT 122
Query: 108 ERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E D K +F+ +GN+ V + R F F+ F++ E+A +++ +L ++++
Sbjct: 123 EEDFKNYFQQFGNITDVVVMYDHNTQRPRGFGFISFDS-EDAVESVLQKSFHQLNEKLVE 181
Query: 160 VEYALKDDS 168
V+ AL D+
Sbjct: 182 VKRALPKDA 190
>gi|403221223|dbj|BAM39356.1| splicing factor [Theileria orientalis strain Shintoku]
Length = 334
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-------FAFVYFEDDRDAADAIRGLD 57
+FVGN + ++ LF K+G I+ +D+K G +AF+ F R A DA+ D
Sbjct: 15 VFVGNLPEKVDNRDIHDLFDKFGEIKDIDIKHGKTTNYTSYAFIDFASVRSAEDAVDSRD 74
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ YDR +L VE+A + R D + ++ T VI+ P R + +K H
Sbjct: 75 G--YEYDRYKLRVEFAGEGKPRKHDDDRRDRDRHRTDYRLVISNLPHGCRWQHLKDHMRK 132
Query: 118 YGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153
G V +V I +V F + + AL D S+L
Sbjct: 133 AGPVGYVNISHGKGYVDFIHKSDMKYALRKMDGSEL 168
>gi|148669918|gb|EDL01865.1| splicing factor, arginine/serine-rich 1 (ASF/SF2), isoform CRA_c
[Mus musculus]
Length = 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+ YD RL VE+ R P +D+K H G
Sbjct: 77 -YDYDGYRLRVEFPRRL--------------------------PPSGSWQDLKDHMREAG 109
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + + R+ V+F +E+ T A+ D +K
Sbjct: 110 DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 144
>gi|62088696|dbj|BAD92795.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor) variant [Homo sapiens]
Length = 233
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 50 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 108
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 109 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 167
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 168 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 212
>gi|171677404|ref|XP_001903653.1| hypothetical protein [Podospora anserina S mat+]
gi|170936770|emb|CAP61428.1| unnamed protein product [Podospora anserina S mat+]
Length = 1066
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 16/165 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKSGFAFVYFEDDRDAADAIRGLD 57
+FV N+ + + L LF +G I + ++K F ++ F + R +A+A LD
Sbjct: 678 LFVTNYPPDADEEYLRNLFKAHGEIHSIRFPSLKENVKRRFCYLTFRE-RASAEAALKLD 736
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
G R RL V+ + +HR G+ Q + L VIN P +E +++ HF
Sbjct: 737 GKALG-GRCRLVVKISDPAHKQHRQGA-----QEEERELHVINI-PRTMKEDEVEGHFTK 789
Query: 118 YGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V+ VRI AFV +T+EEA +A++ D++ I VE
Sbjct: 790 AGKVVSVRIPHLGTAFVVMQTKEEAQEAIKLLDKAMFGQHPIKVE 834
>gi|312089500|ref|XP_003146270.1| hypothetical protein LOAG_10698 [Loa loa]
Length = 111
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLDN 58
+FVG + ELE FSKYGRI++V + GFAFV FED RDA DA++GLD
Sbjct: 12 VFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDAEDAVKGLDG 68
>gi|112982956|ref|NP_001037676.1| splicing factor arginine/serine-rich 6 [Bombyx mori]
gi|109706819|gb|ABG42996.1| splicing factor arginine/serine-rich 6 [Bombyx mori]
Length = 306
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG + R+ +LE+ F +GRI + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG---ERGRHRDGSKSMANQR----------PTKTLFVINFDPIRTR--ER 109
R+ VE ARG R+R G + PT+T + + + + +R +
Sbjct: 66 --RVVVEPARGIDRSADRYRRGDRHYERSGGGRSRYEYGPPTRTEYRLIVENVSSRISWQ 123
Query: 110 DIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKL 153
D+K + G V + + RN V+F T + A+E D ++L
Sbjct: 124 DLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 170
>gi|341902095|gb|EGT58030.1| CBN-RSP-3 protein [Caenorhabditis brenneri]
Length = 275
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
++VGN + + ++ LF YGR+ VD+K+G FAFV + D RDA DA+ LD
Sbjct: 9 LYVGNIPEDATKEDIYDLFETYGRVLYVDIKNGKISRFAFVAYRDFRDADDAVNYLDK-- 66
Query: 61 FGYDRRRLSVEWARGERGRHRDGS-KSMAN-------------QRPTKTLFVINFDPIRT 106
F Y R L VE + G R G S N QR + + P
Sbjct: 67 FDYHGRSLRVEHSTGVGPRGWGGQPLSSINGDNFRIARGPGGPQRRSDFRVFVEGIPQTG 126
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLV 154
+D+K HF P G + I N V+FE + ++++ D+++
Sbjct: 127 SWQDLKDHFRPAGEICFAMISHNKTGIVEFEKKSSVQRSIDIFDKTEFT 175
>gi|413953603|gb|AFW86252.1| hypothetical protein ZEAMMB73_610467 [Zea mays]
Length = 847
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + + GF + + D R A +A+R L N
Sbjct: 197 SRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARNAMRALQN 256
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 257 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGAY 306
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +++ F++F A AL S ++S++ + I +E
Sbjct: 307 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLE 352
>gi|347972221|ref|XP_003436860.1| AGAP004592-PE [Anopheles gambiae str. PEST]
gi|333469348|gb|EGK97259.1| AGAP004592-PE [Anopheles gambiae str. PEST]
Length = 351
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 29/181 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG-ERG--------------------RHRDGSKSMANQRP---TKTLFVIN 100
R+ VE ARG RG +++ S++ + P T+ V+
Sbjct: 66 --RVVVEPARGTARGPSGYRERDRYDRDRRGGRYDKYKSNSRNSSRYGPPLRTEYRLVVE 123
Query: 101 FDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRV 157
R +D+K + G V + + R+N V+F T + A+E D ++L R
Sbjct: 124 NLSTRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRR 183
Query: 158 I 158
I
Sbjct: 184 I 184
>gi|297740630|emb|CBI30812.3| unnamed protein product [Vitis vinifera]
Length = 787
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 215 SRTLFVRNINSNVEDSELRTLFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 274
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + + D+++ F Y
Sbjct: 275 KPL--RRRKLDIHFSIPK----DNPSDKDVNQ---GTLVVFNLDPSVSND-DLRQIFGAY 324
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL S +RS + + I +E
Sbjct: 325 GEVKEIRETPHKRHHKFIEFYDVRAAEAALRSLNRSDIAGKRIKLE 370
>gi|254565225|ref|XP_002489723.1| RNA-binding protein that carries poly(A)+ mRNA from the nucleus
into the cytoplasm [Komagataella pastoris GS115]
gi|238029519|emb|CAY67442.1| RNA-binding protein that carries poly(A)+ mRNA from the nucleus
into the cytoplasm [Komagataella pastoris GS115]
gi|328350141|emb|CCA36541.1| Polyadenylate-binding protein 1-like [Komagataella pastoris CBS
7435]
Length = 329
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FV + R EL+ LF K+G I+ V + G+AFV +E+ DA+ A+ L+N PFG
Sbjct: 9 LFVRPLPGDVRPEELQDLFGKFGPIKEVKIMRGYAFVEYEEGADASAALENLNNTPFG-- 66
Query: 65 RRRLSVEWAR-----GERGRHR----DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ L +E+A+ +RG +R + +S+A Q K D + T R + RH
Sbjct: 67 DQDLQIEFAKEKPSYAKRGENRVKVTNIPESIAWQD-LKDFIAKEIDILPTFAR-LNRHD 124
Query: 116 EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
EP A ++F +EE A+E + L + ++ E
Sbjct: 125 EPPT-----------ATLEFNNREELEAAVEKINGIVLEEHTLTAE 159
>gi|389615269|dbj|BAM20617.1| RNA-binding protein [Papilio polytes]
Length = 159
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLD 57
+S ++VGN + E+E++FSKYG I V + GFAFV FED RDA D++RGLD
Sbjct: 9 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 68
Query: 58 NIPFGYDRRRLSVEWARGERGR 79
R R+ + R R R
Sbjct: 69 GTRCCGTRIRVEMSNGRTRRDR 90
>gi|312074319|ref|XP_003139917.1| arginine/serine-rich splicing factor 1B [Loa loa]
gi|307764919|gb|EFO24153.1| arginine/serine-rich splicing factor 1B [Loa loa]
Length = 266
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK----SGFAFVYFEDDRDAADAIRGLDNIP 60
+FVGN + +Q +LE +F KYGRI +D+K FAFV F+D RDA DA+ G D
Sbjct: 9 VFVGNLPSDVKQRDLEDIFYKYGRINFIDIKFTRDVPFAFVEFDDPRDARDAVHGRDG-- 66
Query: 61 FGYDRRRLSVEWARGERGRHRDGSKSMANQ----------RPTKTLFVINFDPIRTRERD 110
+ +D R+ VE RG R G R + VI+ P +D
Sbjct: 67 YDFDGCRIRVELTRGVGPRGPGGRPLYGPDPRSPRHGPPPRRSGYRVVISGLPDTGSWQD 126
Query: 111 IKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169
+K H G + + + R+ V++ E+ AL D +K V Y
Sbjct: 127 LKDHMRDAGEICYADVFRDGTGVVEYTNYEDMKYALRKLDDTKFKSHEGEVTYI----RV 182
Query: 170 RDDRYDSPRRGGYGRHSPYGRSPSPAY 196
R+ +SP R ++P SP Y
Sbjct: 183 REANINSPNRSRSRSYTPRKTRSSPKY 209
>gi|34785174|gb|AAH56752.1| Sfrs1 protein [Danio rerio]
Length = 188
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 179
>gi|194374487|dbj|BAG57139.1| unnamed protein product [Homo sapiens]
Length = 158
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGS 84
R+ VE ARG R RDGS
Sbjct: 64 --RVIVEHARGPR---RDGS 78
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164
+ RERD++R F+ YG +L V ++ + FV+F+ +A A+ + L + VE+A
Sbjct: 12 QARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA- 70
Query: 165 KDDSERDDRYDSPRRG 180
RD Y S R G
Sbjct: 71 -RGPRRDGSYGSGRSG 85
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N E ++ E +F +G + V +++ GF FV FE+ A +A++ ++
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMN 300
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ D ++L V A+ +R R + + + R K LFV N D E+
Sbjct: 301 DKEI--DGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEK- 357
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + R+ + F FV F + EEATKA+ ++ + + + V A
Sbjct: 358 LEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALA 417
Query: 164 LKDDSER 170
+ D R
Sbjct: 418 QRKDVRR 424
>gi|413953604|gb|AFW86253.1| hypothetical protein ZEAMMB73_610467 [Zea mays]
Length = 772
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + + GF + + D R A +A+R L N
Sbjct: 197 SRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARNAMRALQN 256
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 257 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGAY 306
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +++ F++F A AL S ++S++ + I +E
Sbjct: 307 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLE 352
>gi|158523286|sp|Q99729.2|ROAA_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=APOBEC1-binding protein
1; Short=ABBP-1
Length = 332
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 71 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 127
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P E I+ +F
Sbjct: 128 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|225463378|ref|XP_002271605.1| PREDICTED: protein MEI2-like 2-like [Vitis vinifera]
Length = 860
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 191 SRTLFVRNINSNVEDSELRTLFEQYGAIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 250
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + + D+++ F Y
Sbjct: 251 KPL--RRRKLDIHFSIPK----DNPSDKDVNQ---GTLVVFNLDPSVSND-DLRQIFGAY 300
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL S +RS + + I +E
Sbjct: 301 GEVKEIRETPHKRHHKFIEFYDVRAAEAALRSLNRSDIAGKRIKLE 346
>gi|195388956|ref|XP_002053144.1| GJ23504 [Drosophila virilis]
gi|194151230|gb|EDW66664.1| GJ23504 [Drosophila virilis]
Length = 247
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 23/169 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV FED RDA DA++ D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDG-- 66
Query: 61 FGYDRRRLSVEWARGE-----RGRHRDGSKSMAN----------QRPTKTLFVINFDPIR 105
+ YD RL VE+ RG RG +R+ +R + V P
Sbjct: 67 YDYDGYRLRVEFPRGGGPGSYRGNNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGL-PGS 125
Query: 106 TRERDIKRHFEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++ + V+F E+ A++ D S+
Sbjct: 126 GSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRF 174
>gi|310772202|ref|NP_001006476.2| serine/arginine-rich splicing factor 5a [Gallus gallus]
gi|326920574|ref|XP_003206544.1| PREDICTED: serine/arginine-rich splicing factor 4-like [Meleagris
gallopavo]
Length = 278
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG+ R+ ++E+ F YGRI + +K+GF FV FED RDA DAI L+ +
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDE 65
Query: 65 RRRLSVEWAR--------GERGRHRDGSKSMANQRPTKT---LFVINFDPIRTRERDIKR 113
R+++E AR +R + S S P +T + V N R +D+K
Sbjct: 66 --RVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSS-RISWQDLKD 122
Query: 114 HFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
G V +V R RN V+F + + ALE D ++L R I +
Sbjct: 123 VMRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRRIKL 172
>gi|239606902|gb|EEQ83889.1| pre-RNA splicing factor Srp2 [Ajellomyces dermatitidis ER-3]
gi|327351368|gb|EGE80225.1| RNA recognition domain-containing protein containing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 299
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 21/205 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKY---GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
+++GN + E+E F+ + G+I + + SGF F+ +ED DA D +P
Sbjct: 9 LYLGNLPRNVTKQEIEDHFNSHHGSGKITEIKLMSGFGFIEYEDAMDAKDV------VPD 62
Query: 62 GYDRR--RLSVEWARGERGRHRDGSKS--MANQRPTKTLFVINFDPI-RTRERDIKRHFE 116
G D + RL+V++ARG R + S + RP +T++ + + T +D+K
Sbjct: 63 GTDFKGERLTVQFARGPRHKETFSGPSDRSSAPRPRRTIYRMQISGLPETSWQDLKDFAR 122
Query: 117 PYG-NVLHVRIRRNF-AFVQFETQEEATKALESTD-RSKLVDRVISVE--YALKDDSERD 171
G +V++ + FV+FET + A+E D R RV+ + +L+D RD
Sbjct: 123 QSGLDVVYSETGHDGRGFVEFETGSDLKTAVEKLDGREFKGSRVLCTQDIQSLEDRQSRD 182
Query: 172 D-RYDSP-RRGGYGRHSPYGRSPSP 194
R SP RRGGY + Y R +P
Sbjct: 183 PYRSRSPGRRGGYHPYDDYDRRGAP 207
>gi|356554642|ref|XP_003545653.1| PREDICTED: probable RNA-binding protein 19-like [Glycine max]
Length = 824
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFS---KYGRIERV----------DMKSGFAFVYFEDDRD 48
+R +FV N ++T L + FS K GRI V ++ GF FV F+
Sbjct: 597 ARSLFVKNLNFKTIDESLRKHFSEHMKEGRILSVKVLKHLKNGKNVSMGFGFVEFDSPET 656
Query: 49 AADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
A + R L D L ++ + + K + R + L + N E
Sbjct: 657 ATNVCRDLQGTVL--DSHALILQPCHVKNDGQK--QKKIDKDRSSTKLHIKNV-AFEATE 711
Query: 109 RDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
+D++R F P+G + +R+ R FAFV++ TQ+EA A E+ + L R + +E+
Sbjct: 712 KDLRRLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAKNAREALASTHLYGRHLLIEH 771
Query: 163 ALKDDS 168
A +D++
Sbjct: 772 AKEDET 777
>gi|115462263|ref|NP_001054731.1| Os05g0162600 [Oryza sativa Japonica Group]
gi|46981336|gb|AAT07654.1| unknown protein [Oryza sativa Japonica Group]
gi|113578282|dbj|BAF16645.1| Os05g0162600 [Oryza sativa Japonica Group]
gi|215693366|dbj|BAG88748.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768462|dbj|BAH00691.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630300|gb|EEE62432.1| hypothetical protein OsJ_17224 [Oryza sativa Japonica Group]
Length = 338
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LE LFS+YGR+ VD+K+ + FV F D RDA DA LD YD
Sbjct: 20 LYVGHISLRTRAEDLENLFSRYGRVRFVDLKNEYGFVEFSDPRDANDARLDLDGRK--YD 77
Query: 65 RRRLSVEWARG-ERG 78
+ V++ARG ERG
Sbjct: 78 GSDIIVQFARGVERG 92
>gi|56758822|gb|AAW27551.1| SJCHGC05822 protein [Schistosoma japonicum]
gi|226469552|emb|CAX76606.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469554|emb|CAX76607.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469556|emb|CAX76608.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469558|emb|CAX76609.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469560|emb|CAX76610.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469562|emb|CAX76611.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226469564|emb|CAX76612.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472960|emb|CAX71166.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472964|emb|CAX71168.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
gi|226472966|emb|CAX71169.1| Splicing factor, arginine/serine-rich 1 [Schistosoma japonicum]
Length = 225
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG------FAFVYFEDDRDAADAIRG 55
+ I+VGN + + ++E LFSKYG I +D+K+G FAFV FED+ DA+DA+RG
Sbjct: 5 THKIYVGNLPPDAKTRDIENLFSKYGPIAAIDLKAGQRRGPPFAFVEFEDELDASDAVRG 64
Query: 56 LDNIPFGYDRRRLSVEWAR 74
D + +D L VE R
Sbjct: 65 RDG--YNFDGYALRVELPR 81
>gi|356567420|ref|XP_003551918.1| PREDICTED: protein MEI2-like 2-like [Glycine max]
Length = 857
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 198 SRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 257
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP + + D+++ F Y
Sbjct: 258 KPL--RRRKLDIHFSIPK----DNPSEKDINQ---GTLVVFNLDPSVSND-DLRQIFGAY 307
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL++ +RS + + I +E
Sbjct: 308 GEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLE 353
>gi|213515460|ref|NP_001133886.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
gi|209155694|gb|ACI34079.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
gi|223649152|gb|ACN11334.1| Splicing factor, arginine/serine-rich 9 [Salmo salar]
Length = 252
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 21/168 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + ++ ++E LF KYG+I +++K+ FAFV FED RDA DA+ G +
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRGTIPFAFVRFEDPRDAEDAVYGRNG- 64
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-------------QRPTKTLFVINFDPIRT 106
+G +L VE+ R + R ++ ++ P
Sbjct: 65 -YGLGDSKLRVEYPRSSGAKFSGPMGGGERGEGGGPKGRFGPPTRRSEFRVIVTGLPPSG 123
Query: 107 RERDIKRHFEPYGNVLHVRIRRNF-AFVQFETQEEATKALESTDRSKL 153
+D+K H G+V ++R+ V+F +E+ AL DR++
Sbjct: 124 SWQDLKDHMREAGDVCFADVQRDGEGVVEFVRREDMEYALRRLDRTEF 171
>gi|413942544|gb|AFW75193.1| hypothetical protein ZEAMMB73_807044 [Zea mays]
gi|413942545|gb|AFW75194.1| hypothetical protein ZEAMMB73_807044 [Zea mays]
Length = 823
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + + GF + + D R A +A+R L N
Sbjct: 173 SRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARNAMRALQN 232
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 233 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGAY 282
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +++ F++F A AL S ++S++ + I +E
Sbjct: 283 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLE 328
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + +F+++G I ++ GF FV +E+ DA A+ L+
Sbjct: 221 LYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ +L V A+ + R K R K LFV N D E+
Sbjct: 281 ESDL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R+ F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEK-FQEMFAQ 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDL 284
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 29/175 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLS-VEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
L+ P + RL + W++ + + GS + +F+ N P + +
Sbjct: 97 DQLNYTPI---KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALY 143
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 144 DTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
>gi|242094342|ref|XP_002437661.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
gi|241915884|gb|EER89028.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
Length = 822
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + + GF + + D R A +A+R L N
Sbjct: 173 SRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARNAMRALQN 232
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 233 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGAY 282
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +++ F++F A AL S ++S++ + I +E
Sbjct: 283 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLE 328
>gi|431911731|gb|ELK13879.1| RNA-binding protein 28 [Pteropus alecto]
Length = 758
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 40/225 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 D-------NIPFGYDR-RRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRE 108
N+ + R+ S E E + K L + N + E
Sbjct: 66 TTFEGCKINVTVAKKKLRKTSKEKENLESPKKEQKPKKAKVADKKARLIIRNLS-FKCSE 124
Query: 109 RDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
D+K F YG VL V I R FAFVQF+ EA KAL+S + ++ R ++V+
Sbjct: 125 DDLKTVFAQYGAVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAVD 184
Query: 162 YALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSPDYGR 206
+A+ D+Y +++P + +P +RP P + +
Sbjct: 185 WAVA-----KDKY---------KNTPS--ASAPGVEKRPEPKHQK 213
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
Query: 94 KTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 143
KT+F+ ++FD + E D+ + +G++ +VRI + AF QF TQE A K
Sbjct: 334 KTVFIRNLSFD---SEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390
Query: 144 ALEST 148
LE+
Sbjct: 391 CLEAA 395
>gi|297851358|ref|XP_002893560.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339402|gb|EFH69819.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 799
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 99/233 (42%), Gaps = 40/233 (17%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQN 226
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP + + D+ F +
Sbjct: 227 KPL--RRRKLDIHFSIPK----DNPSEKDMNQ---GTLVVFNLDPSISND-DLHGIFGVH 276
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE------------YA 163
G + +R +R+ FV+F A AL++ +R ++ + I VE
Sbjct: 277 GEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQ 336
Query: 164 LKDDSERDDRY-----------DSPRRGGYGRHSPYGRSPSPAYRRRPSPDYG 205
L + E DD + P +G + +SP SP + R SP YG
Sbjct: 337 LNQELENDDLHYLPMIGSPMANSPPMQGNWMLNSPVEGSPLQSVLSR-SPVYG 388
>gi|348519445|ref|XP_003447241.1| PREDICTED: hypothetical protein LOC100690923 isoform 2 [Oreochromis
niloticus]
Length = 386
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G Y R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+
Sbjct: 1 MSR-VYIGRLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKE 59
Query: 61 FGYDR---RRLSVEWARGERGRHRDGSKSMANQRPTKT---LFVINFDPIRTRERDIKRH 114
+R G G G P +T L V N R +D+K +
Sbjct: 60 LCGERVIVEHTRGPRRDGGYGGGGGGGGRDRYGPPIRTDYRLIVENLSS-RCSWQDLKDY 118
Query: 115 FEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
G V + + R+N ++F + +ALE D +++ R I
Sbjct: 119 MRQAGEVTYADTHKGRKNEGVIEFRLYSDMKRALEKLDGTEVNGRKI 165
>gi|322789865|gb|EFZ15012.1| hypothetical protein SINV_14247 [Solenopsis invicta]
Length = 186
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNIP 60
I+VGN + R +++ LF K+G++ VD+K+ FAFV F+D RDA DA+ D
Sbjct: 12 IYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDG-- 69
Query: 61 FGYDRRRLSVEW------------ARGERGRHRDGSKSMANQRP-------TKTLFVINF 101
+ YD RL VE+ RG R G M+N R ++ +++
Sbjct: 70 YDYDGYRLRVEFPRGGGPSNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVSG 129
Query: 102 DPIRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V + ++ V+F ++ A++ D S+
Sbjct: 130 LPPSGSWQDLKDHMREAGDVCFADVYKDGTGVVEFLRHDDMKYAVKKLDDSRF 182
>gi|332822801|ref|XP_518142.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
troglodytes]
Length = 338
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 78 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 134
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 135 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 180
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 181 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 219
>gi|291224547|ref|XP_002732263.1| PREDICTED: splicing factor, arginine/serine-rich 4-like
[Saccoglossus kowalevskii]
Length = 261
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 36/191 (18%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
M +++G Y+TR+ ++ER F +G + V++K+GF FV F+D RDA DA+ L+
Sbjct: 1 MGTRVYIGRLSYQTRERDVERFFRGFGHLREVNLKNGFGFVEFDDPRDADDAVYELNGKD 60
Query: 61 FGYDRRRLSVEWARGERGRHRD-----GSKSMANQR----------------------PT 93
+ R+ +E ARG R RD GS+ PT
Sbjct: 61 LCGE--RVIIEHARGPVRRDRDSGGYRGSERDYRGDRGGGYGPPRRRGGGGGIDKYGPPT 118
Query: 94 KT---LFVINFDPIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALES 147
+T L V N R +D+K + G V + + +N V+F T + A+
Sbjct: 119 RTDNRLIVENLSS-RCSWQDLKDYMRQAGEVTYADAHKEHKNEGVVEFATYSDMKNAMSK 177
Query: 148 TDRSKLVDRVI 158
D +++ R +
Sbjct: 178 LDGTEINGRKV 188
>gi|297741109|emb|CBI31840.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFA 39
RPIF GNF+Y+ RQS+LERLF +YG+++RVDMK+G +
Sbjct: 14 RPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGLS 50
>gi|410915734|ref|XP_003971342.1| PREDICTED: serine/arginine-rich splicing factor 1-like [Takifugu
rubripes]
Length = 238
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 13/160 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E LF K+G I +D+K+ FAFV FED RD+ DA+ D
Sbjct: 17 IYVGNLPPDIRSKDIEDLFYKFGAIRDIDLKNRRGGPPFAFVEFEDPRDSGDAVYERDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-----QRPTKTLFVINFDPIRTRERDIKRH 114
+ YD RL VE+ RG RG G R + V++ P +D+K H
Sbjct: 76 -YDYDGYRLRVEFPRGGRGGGGRGMGPPRTRYGPPSRRSDYRVVVSGLPQSGSWQDLKDH 134
Query: 115 FEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 MREAGDVCYTDVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 174
>gi|406868018|gb|EKD21055.1| RNA binding domain containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 426
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIR 54
S I+VGN ++ Q +++R F +G I+ V + S GF +V FE A AI
Sbjct: 230 SNSIYVGNLLFDITQEDIQREFESFGPIKSVTIASDNRGLSKGFGYVEFESIEQATAAIE 289
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
G + + RRL V + + R G++ + P+KTLF+ N + D+ +
Sbjct: 290 GKNQAVL--EGRRLVVNYMNKSQ-RSPAGAEPV--NEPSKTLFIGNL-AFEMSDADLNKL 343
Query: 115 FEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA--L 164
F NV+ VR+ R FA F E A K ++ ++ R + ++++ +
Sbjct: 344 FRDIRNVIDVRVAIDRRTGQPRGFAHADFVDVESAIKGKDALLGKEVYGRTLRIDFSAGI 403
Query: 165 KD-----DSERDDRYDSP 177
+D RD R D+P
Sbjct: 404 RDRRGDGTPPRDTRVDAP 421
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 144
P+ +++V N T+E DI+R FE +G + V I + F +V+FE+ E+AT A
Sbjct: 229 PSNSIYVGNLLFDITQE-DIQREFESFGPIKSVTIASDNRGLSKGFGYVEFESIEQATAA 287
Query: 145 LESTDRSKLVDRVISVEYALK 165
+E +++ L R + V Y K
Sbjct: 288 IEGKNQAVLEGRRLVVNYMNK 308
>gi|227206268|dbj|BAH57189.1| AT4G18120 [Arabidopsis thaliana]
Length = 629
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL+ LF +YG I + GF V + D R + A+R L
Sbjct: 35 SRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQG 94
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
+R+L + ++ + + S+ NQ TL V N P RD++ F Y
Sbjct: 95 KLL--KKRKLDIHFSIPK----DNPSEKDVNQ---GTLVVFNLAP-SVSNRDLENIFGVY 144
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G + +R +R+ FV+F A AL++ +R+++ + I +E++
Sbjct: 145 GEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQ 204
Query: 164 LKDDSERDDRYDSPRRGGYGRH--SPYGRSPSPAYRRRP--SPDYGRGRSPAY 212
+ + E+DD Y Y H SP SP +R P P +SP +
Sbjct: 205 MNPELEQDDSYS------YLNHVESPLASSPIGNWRNSPIDHPLQSFSKSPIF 251
>gi|393904920|gb|EFO17802.2| hypothetical protein LOAG_10698 [Loa loa]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLD 57
+ +FVG + ELE FSKYGRI++V + GFAFV FED RDA DA++GLD
Sbjct: 8 LECKVFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDAEDAVKGLD 67
>gi|328789146|ref|XP_395705.4| PREDICTED: hypothetical protein LOC412243 [Apis mellifera]
Length = 4297
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R +F+GN E + SEL + F +G I +D+K S +AF + D A+R +
Sbjct: 467 TRTLFIGNLEKDVTASELRKHFEPFGEIIEIDIKKQGAVSSYAFCQYSDIGSVVKAMRSM 526
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D G +R +L KSM PT ++V + E+ + F
Sbjct: 527 DGEHLGANRIKLGF-------------GKSM----PTSCVWVDGIGDCMS-EKYLNMQFH 568
Query: 117 PYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY 174
+G + V + R A V FE A A++ + L R + V++A ++ E Y
Sbjct: 569 QFGPINQVVVDRERGHALVFFEQISCAQAAVKEMRGTALRGRRLQVDFASRECQET--FY 626
Query: 175 DSPRRGGYGRHSPYGRSPSPA 195
+ R G P+ PSPA
Sbjct: 627 EHLERQGIAGERPWDTRPSPA 647
>gi|162458653|ref|NP_001105679.1| LOC542693 [Zea mays]
gi|47680311|gb|AAT37139.1| arginine/serine-rich splicing factor 2 variant 3 [Zea mays]
gi|47680376|gb|AAT37130.1| arginine/serine-rich splicing factor 2 variant 3 [Zea mays]
Length = 75
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYF 43
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG + F
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSGLPALAF 42
>gi|125550950|gb|EAY96659.1| hypothetical protein OsI_18573 [Oryza sativa Indica Group]
Length = 338
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG+ TR +LE LFS+YGR+ VD+K+ + FV F D RDA DA LD YD
Sbjct: 20 LYVGHISLCTRAEDLENLFSRYGRVRFVDLKNEYGFVEFSDPRDANDARLDLDGRK--YD 77
Query: 65 RRRLSVEWARG-ERG 78
+ V++ARG ERG
Sbjct: 78 GSDIIVQFARGVERG 92
>gi|268531976|ref|XP_002631116.1| C. briggsae CBR-RSP-2 protein [Caenorhabditis briggsae]
Length = 279
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN------ 58
+++G ++E F YG++ V MK+GF FV F++ RDA DA+ L+
Sbjct: 4 VYIGRLPNRATDRDVEHFFRGYGKLSDVIMKNGFGFVDFQEQRDADDAVHDLNGKDLCGE 63
Query: 59 -IPFGYDRRRLSVEWAR---GERGRH----RDGSKSMAN--QRPTKTLFVINFDPIRTR- 107
+ + RR++ R G RGR R G + +N RP T F + D + TR
Sbjct: 64 RVILEFPRRKVGYNEERSGGGFRGREPTFRRGGERQFSNRYSRPCSTRFRLVIDNLSTRY 123
Query: 108 -ERDIKRH-----FEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
+DIK H EP + H R N A V F T ++ A+ +L R +
Sbjct: 124 SWQDIKDHIRKLGIEPTYSEAHKR-NVNQALVCFSTHDDLRDAMNKLQGEELNGRKLKCT 182
Query: 162 YALKD 166
+D
Sbjct: 183 DETRD 187
>gi|357450611|ref|XP_003595582.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355484630|gb|AES65833.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 764
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + GF + + D R A A+R L N
Sbjct: 94 SRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 153
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 154 KPL--RRRKLDIHFSIPK----DNPSDKDINQ---GTLVVFNLDPSVSNE-DLRQIFGAY 203
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE----------YALK 165
G V +R +R+ F+++ A AL+S +RS + + I +E L+
Sbjct: 204 GEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQ 263
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
+ E D D R Y SP SP + + SP
Sbjct: 264 LNQELDQ--DESRSFRYQVGSPLAGSPPGNWLQFNSP 298
>gi|405976927|gb|EKC41405.1| hypothetical protein CGI_10025681 [Crassostrea gigas]
Length = 3532
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGL 56
+R +FVGN E + EL F K+G I +D+K S +AFV F D R ++ +
Sbjct: 467 TRTLFVGNLEKDISNQELRERFLKFGDILDIDVKRQGAVSAYAFVQFTDIRSVVKVLKEM 526
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ +G + +L KSM PT +++ N D +E + R F
Sbjct: 527 EGEVWGSMKLKLGF-------------GKSM----PTNCVWLDNVDQT-VQENFLSRQFG 568
Query: 117 PYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
YG V H I R A V F E+A AL L ++ I +++A +D
Sbjct: 569 RYGQVTHGIIDRIKGKALVYFTNAEQAQYALVEMRNRILNNKKIMIDFASRD 620
>gi|317139650|ref|XP_003189187.1| C6 transcription factor [Aspergillus oryzae RIB40]
Length = 1086
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKSGFAFVYFEDDRDAADAIRGLD 57
+FVGN Y+ +L + KYG +E V M GF +V F D D+A R +D
Sbjct: 908 VFVGNLFYDVTADDLRKQMEKYGVVESVYITFDNRGMSKGFGYVQF-DSIDSAR--RAID 964
Query: 58 NIPF-GYDRRRLSVEWARGERGRHRDGSKSMANQRP-TKTLFVINFDPIRTRERDIKRHF 115
+ Y+ RR+ V +A+ +HR N RP ++TL++ N P +RDI F
Sbjct: 965 AMHMRVYEGRRVIVAFAQNNIDQHR-------NLRPISRTLYLGNL-PFEMTDRDINELF 1016
Query: 116 EPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA---- 163
NV+ VR+ R FA +F E A A E R R + ++Y+
Sbjct: 1017 RDIVNVIDVRVSVDRRTGMFRGFAHAEFINVESARAAFEILSRKAPYGRKLRLDYSQTNR 1076
Query: 164 ----LKDDSE 169
L+D++E
Sbjct: 1077 RADRLEDNTE 1086
>gi|291190420|ref|NP_001167114.1| Splicing factor, arginine/serine-rich 1 [Salmo salar]
gi|223648208|gb|ACN10862.1| Splicing factor, arginine/serine-rich 1 [Salmo salar]
Length = 251
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAF+ FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------QRPTKTLFVINFDPIRTRE 108
+ YD RL VE+ R RG R G R ++ +++ P
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGFGGGGVGGAPRGRYGPPSRRSEYRVIVSGLPQSGSW 134
Query: 109 RDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 QDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|195500849|ref|XP_002097550.1| GE24428 [Drosophila yakuba]
gi|194183651|gb|EDW97262.1| GE24428 [Drosophila yakuba]
Length = 345
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 37/177 (20%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIR 54
R +FVG +ET + EL F KYG IE +++K+ GFAF+ F + +A D +
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFT-NTEAIDKVS 114
Query: 55 GLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
+D + +++ + A+ G+ +FV T E +IK +
Sbjct: 115 AVDEHII--NSKKVDPKKAKARHGK----------------IFVGGLTTEITDE-EIKTY 155
Query: 115 FEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F +GN++ V + R+ F F+ F++++ T L+ T + K+ + + V+ A
Sbjct: 156 FGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK-TPKQKIAGKEVDVKRA 211
>gi|357621499|gb|EHJ73311.1| splicing factor arginine/serine-rich 6 [Danaus plexippus]
Length = 408
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG + R+ +LE+ F +GRI + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG----------------ERGRHRDGSKSMANQRPTKT---LFVINFDPIR 105
R+ VE ARG +RGR R + PT+T L V N R
Sbjct: 66 --RVVVEPARGIDRSADRYRRDRYYERDRGRSRYDDYNYRYGPPTRTEYRLIVENLSS-R 122
Query: 106 TRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDR 156
+D+K + G V + + RN V+F T + A+E D ++L R
Sbjct: 123 ISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGR 176
>gi|307187926|gb|EFN72839.1| RNA-binding protein 1 [Camponotus floridanus]
Length = 213
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLD 57
+S ++VGN + ELE FSKYG + + + GFAFV FED RDA DA+RGLD
Sbjct: 9 LSCKVYVGNLGSSASKHELEGKFSKYGPLRNIWVARNPPGFAFVEFEDPRDAEDAVRGLD 68
Query: 58 NIPFGYDRRRLSV 70
+ R R+ +
Sbjct: 69 GVHLCGTRVRVEM 81
>gi|357450609|ref|XP_003595581.1| Polyadenylate-binding protein [Medicago truncatula]
gi|47834691|gb|AAT38999.1| AML5 [Medicago truncatula]
gi|87241360|gb|ABD33218.1| RNA-binding region RNP-1 (RNA recognition motif); RNA recognition
motif 2 [Medicago truncatula]
gi|355484629|gb|AES65832.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 865
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + GF + + D R A A+R L N
Sbjct: 195 SRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 254
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 255 KPL--RRRKLDIHFSIPK----DNPSDKDINQ---GTLVVFNLDPSVSNE-DLRQIFGAY 304
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE----------YALK 165
G V +R +R+ F+++ A AL+S +RS + + I +E L+
Sbjct: 305 GEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQ 364
Query: 166 DDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
+ E D D R Y SP SP + + SP
Sbjct: 365 LNQELDQ--DESRSFRYQVGSPLAGSPPGNWLQFNSP 399
>gi|47834689|gb|AAT38998.1| AML1 [Medicago truncatula]
Length = 856
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 197 SRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 256
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S+ NQ TL V N DP + + D+++ F Y
Sbjct: 257 KPL--RRRKLDIHFSIPK----DNPSEKDINQ---GTLVVFNLDPSVSND-DLRQIFGAY 306
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL++ +RS + + I +E
Sbjct: 307 GEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLE 352
>gi|410948034|ref|XP_003980746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Felis
catus]
Length = 300
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 40 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 96
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 97 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 142
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 143 GEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 181
>gi|47834705|gb|AAT39006.1| AML1 [Solanum tuberosum]
Length = 843
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF +YG I + GF + + D R A A+R L N
Sbjct: 179 SRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYFDIRAARTAMRALQN 238
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + + D+++ F PY
Sbjct: 239 KPL--RRRKLDIHFSIPK----DNPSDKDVNQ---GTLVVFNLDPSVSND-DLRKVFGPY 288
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G + +R +R+ F+++ A AL S ++S + + I +E
Sbjct: 289 GEIKEIRETPHKRHHKFIEYYDVRAAEAALRSLNKSAIAGKRIKLE 334
>gi|47086241|ref|NP_998064.1| splicing factor, arginine/serine-rich 9 [Danio rerio]
gi|45501375|gb|AAH67134.1| Zgc:77449 [Danio rerio]
Length = 244
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG-----FAFVYFEDDRDAADAIRGLDNI 59
I+VGN + ++ ++E LF KYG+I +++K+ FAFV FED RDA DA+ G +
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG- 64
Query: 60 PFGYDRRRLSVEWARGERGR---------HRDGSKSMANQRPTKTLFVINFDPIRTRERD 110
+G+ +L VE+ R + + R ++ ++ P +D
Sbjct: 65 -YGFGDCKLRVEYPRSSGSKFSGPAGGGGGGPRGRFGPPTRRSEFRVIVTGLPPTGSWQD 123
Query: 111 IKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTD 149
+K H G+V ++R+ F++ E E A + L+ST+
Sbjct: 124 LKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDSTE 166
>gi|410343159|gb|JAA40526.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKAPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|255557439|ref|XP_002519750.1| RNA-binding protein, putative [Ricinus communis]
gi|223541167|gb|EEF42723.1| RNA-binding protein, putative [Ricinus communis]
Length = 723
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N EL +LF ++G I + GF + + D R A A+R L N
Sbjct: 198 SRTLFVRNINSNVEDIELRQLFEQFGDIRTLYTACKHRGFVMISYYDIRAARTALRALQN 257
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL V N DP + E D+++ F Y
Sbjct: 258 KPL--RRRKLDIHFSIPK----DNPSDKDINQ---GTLVVFNLDPSVSNE-DLRQIFGAY 307
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161
G V +R +R+ F++F A AL+S +RS + + I +E
Sbjct: 308 GEVKEIRETPHKRHHKFIEFYDVRSAESALKSLNRSDIAGKKIKLE 353
>gi|312074323|ref|XP_003139919.1| arginine/serine-rich splicing factor 1 [Loa loa]
gi|307764921|gb|EFO24155.1| arginine/serine-rich splicing factor 1 [Loa loa]
gi|393908262|gb|EJD74982.1| arginine/serine-rich splicing factor 1, variant 1 [Loa loa]
gi|393908263|gb|EJD74983.1| arginine/serine-rich splicing factor 1, variant 2 [Loa loa]
gi|393908264|gb|EJD74984.1| arginine/serine-rich splicing factor 1, variant 3 [Loa loa]
gi|393908265|gb|EJD74985.1| arginine/serine-rich splicing factor 1, variant 4 [Loa loa]
gi|402591888|gb|EJW85817.1| hypothetical protein WUBG_03274 [Wuchereria bancrofti]
Length = 237
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 26/194 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK----SGFAFVYFEDDRDAADAIRGLDNIP 60
+++GN + RQ +LE LF KYG I +D+K + FAF+ F+D RDA DAIRG D
Sbjct: 9 VYIGNLPPDIRQRDLEDLFYKYGHINFIDVKLTRGAPFAFIEFDDPRDARDAIRGRDG-- 66
Query: 61 FGYDRRRLSVEWA-----------------RGERGRHRDGSKSMANQRPTKTLFVINFDP 103
+ D R+ VE RGER R + + + L + P
Sbjct: 67 YELDGCRIRVEMTRGVGPRGPGGRPLYGPDRGERDRRPPPPRGPPRRSGYRVL--VTGLP 124
Query: 104 IRTRERDIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKLVDRVISVEY 162
+ +D+K H G++ + + ++ V++ Q++ A++ D +K Y
Sbjct: 125 VTGSWQDLKDHMREAGDICYADVFKDGTGVVEYTRQDDMKYAIKKLDDTKFKSHEGETSY 184
Query: 163 ALKDDSERDDRYDS 176
++ DDRY S
Sbjct: 185 IRVKEAAIDDRYRS 198
>gi|62898411|dbj|BAD97145.1| heterogeneous nuclear ribonucleoprotein AB isoform a variant [Homo
sapiens]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|410225700|gb|JAA10069.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260870|gb|JAA18401.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299218|gb|JAA28209.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|55956919|ref|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo
sapiens]
gi|426351244|ref|XP_004043165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Gorilla gorilla gorilla]
gi|21757498|dbj|BAC05134.1| unnamed protein product [Homo sapiens]
gi|33874222|gb|AAH36708.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574227|gb|EAW53842.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Homo
sapiens]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADA 52
++ +FVGN + + L F+ G +E + + GF +V FE DA A
Sbjct: 181 VNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFES-ADALTA 239
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
L R+ V + R +R G K PT TLF+ N E +I+
Sbjct: 240 AMALTGTELDGREIRVDVSTPKPPRDGNRQGRKEAPQSAPTTTLFLGNLS-FNVTEDEIR 298
Query: 113 RHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
F YG ++ VR + F +V++ E A KA+E + ++ R + ++YA
Sbjct: 299 ESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGLNGVEIAGRSLRLDYA 357
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+F+GN + + E+ FS+YG++ V + GF +V + D A A+ GL
Sbjct: 283 LFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAVEGL 342
Query: 57 DNIPFGYDRRRLSVEWARG 75
+ + R L +++A G
Sbjct: 343 NGVEIA--GRSLRLDYAGG 359
>gi|383873338|ref|NP_001244741.1| heterogeneous nuclear ribonucleoprotein A/B [Macaca mulatta]
gi|380787211|gb|AFE65481.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|383409139|gb|AFH27783.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|384940566|gb|AFI33888.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|449274709|gb|EMC83787.1| Splicing factor, arginine/serine-rich 4, partial [Columba livia]
Length = 257
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+FVG+ R+ ++E+ F YGRI + +K+GF FV FED RDA DAI L+ +
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDE 65
Query: 65 RRRLSVEWARGERGRH-----------RDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
R+++E AR RGR + GS+ R + V N R +D+K
Sbjct: 66 --RVTIEHARARRGRGRFSQRFSYYPSQSGSRYGPPIRTEHRIIVENLSS-RISWQDLKD 122
Query: 114 HFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
G V +V R RN V+F + + ALE D ++L R I
Sbjct: 123 VMRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRRI 170
>gi|121719870|ref|XP_001276633.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119404845|gb|EAW15207.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 306
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD-------MKSGFAFVYFEDDRDAADAIRGLD 57
I++GN Y+ +L + KYG +ER + M GFA+V FE A AI G
Sbjct: 125 IYIGNLFYDVTSEDLRKHMEKYGAVERTNVILDSRGMSRGFAYVQFESVEAARRAIDGTH 184
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ RR++ ++A+ + DG +S+ Q ++TL++ N +RD+ F+
Sbjct: 185 LQTL--EGRRVTSQYAQT----NMDGHRSL--QPVSRTLYIGNLS-FEMTDRDLNDLFKD 235
Query: 118 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
NV+ VR+ R FA +F E A K LE R R + ++Y+
Sbjct: 236 VSNVIDVRVSIDRRTGQPRGFAHAEFIDAESAQKGLEILSRKSPYGRQLRLDYS 289
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKA 144
P +T+++ N T E D+++H E YG V + R FA+VQFE+ E A +A
Sbjct: 121 PKETIYIGNLFYDVTSE-DLRKHMEKYGAVERTNVILDSRGMSRGFAYVQFESVEAARRA 179
Query: 145 LESTDRSKLVDRVISVEYA 163
++ T L R ++ +YA
Sbjct: 180 IDGTHLQTLEGRRVTSQYA 198
>gi|448878274|gb|AGE46100.1| arginine/serine-rich splicing factor RS28 transcript II [Sorghum
bicolor]
Length = 59
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG 37
RP+FVGN +Y+TR SEL++LF +YGR+ER+DMKSG
Sbjct: 2 RPVFVGNLDYDTRHSELDQLFYRYGRVERIDMKSG 36
>gi|426229395|ref|XP_004008776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Ovis aries]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
>gi|334305801|sp|Q9SVV9.2|AML3_ARATH RecName: Full=Protein MEI2-like 3; Short=AML3; AltName:
Full=MEI2-like protein 3
Length = 759
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL+ LF +YG I + GF V + D R + A+R L
Sbjct: 165 SRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQG 224
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
+R+L + ++ + + S+ NQ TL V N P RD++ F Y
Sbjct: 225 KLL--KKRKLDIHFSIPK----DNPSEKDVNQ---GTLVVFNLAP-SVSNRDLENIFGVY 274
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G + +R +R+ FV+F A AL++ +R+++ + I +E++
Sbjct: 275 GEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQ 334
Query: 164 LKDDSERDDRYDSPRRGGYGRH--SPYGRSPSPAYRRRP--SPDYGRGRSPAY 212
+ + E+DD Y Y H SP SP +R P P +SP +
Sbjct: 335 MNPELEQDDSY------SYLNHVESPLASSPIGNWRNSPIDHPLQSFSKSPIF 381
>gi|194387362|dbj|BAG60045.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 63 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 119
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 120 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 165
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 166 GEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 204
>gi|432863511|ref|XP_004070103.1| PREDICTED: RNA-binding protein 28-like [Oryzias latipes]
Length = 687
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
++ IFVG+ LE +FS+ G +++ + GF FV + + DA A+
Sbjct: 3 TQTIFVGSLPESATNERLEEIFSEIGPVKQCFVVREKGTEKCRGFGFVKYSMEDDAQRAL 62
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRD-----------GSKSM--ANQRPTKTLFVIN 100
+ + + +D +RLS+ A+ + + G+K + ++ K+ +I
Sbjct: 63 KEIKD----FDGKRLSLSLAKKKIDDKKKAVKKTDPAPNPGAKKVPGIKKQQLKSRLIIR 118
Query: 101 FDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKL 153
+ E D+K FE YG VL +I R FAFV F+ A KAL++ + ++
Sbjct: 119 NLSFKCSEDDLKEVFEKYGTVLEAKIPLKPDGKMRGFAFVLFKNVCGAAKALKAMNLKEI 178
Query: 154 VDRVISVEYALKDD 167
R ++V++A+ D
Sbjct: 179 KGRPVAVDWAVPKD 192
>gi|393910934|gb|EFO26130.2| hypothetical protein LOAG_02347 [Loa loa]
Length = 555
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRG 55
+R +FVGN + R+SE+ R+F KYG++E VD+K+ +AFV F+ + +A
Sbjct: 198 TRTLFVGNMPADIRESEIRRVFEKYGKVEDVDIKTPPETNAAYAFVLFQTLEQSMNAKAN 257
Query: 56 LDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHF 115
+ P R + + + + P+ L++ P + E + + F
Sbjct: 258 EHDRPIRPGTTRCKIGYGKSQ---------------PSNRLWIGGLGPWTSAEY-LAKEF 301
Query: 116 EPYGNV--LHVRIRRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYALKDDSERD 171
+ YG + L +FA+++F Q A A + L DR I V++A KDD + D
Sbjct: 302 DRYGLIDRLDYEEGADFAYIRFTDQNAAMDACRAMKGFPLGGRDRCIIVDFA-KDDQKED 360
>gi|242089645|ref|XP_002440655.1| hypothetical protein SORBIDRAFT_09g004685 [Sorghum bicolor]
gi|241945940|gb|EES19085.1| hypothetical protein SORBIDRAFT_09g004685 [Sorghum bicolor]
Length = 241
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR + E LFSKYGR+ VD+K F FV F D RDA DA LD F D
Sbjct: 2 LYVGQISPHTRTQDHEDLFSKYGRLRNVDLKRDFGFVEFSDPRDADDARHDLDGRRF--D 59
Query: 65 RRRLSVEWARGER 77
+ VE+ARG R
Sbjct: 60 GSYIIVEFARGAR 72
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 74/200 (37%), Gaps = 52/200 (26%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
L+V P TR +D + F YG + +V ++R+F FV+F +A A D +
Sbjct: 2 LYVGQISP-HTRTQDHEDLFSKYGRLRNVDLKRDFGFVEFSDPRDADDARHDLDGRRFDG 60
Query: 156 RVISVEYA------------------------------LKDDSERDDRYDSPRRGGYGRH 185
I VE+A D + DD D R G H
Sbjct: 61 SYIIVEFARGARRGPGGVPLDVRGPPFPGRCYNCGMDGWVRDCKADDWRDRCFRCGELGH 120
Query: 186 SPYGRSPSP-------AYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR------HR 232
SP +Y R PSP +G+GR G Y + SP HGR R
Sbjct: 121 IERNCKNSPKDLKRGRSYSRSPSPHHGKGR--------GRSYSKSLSPHHGRGRGRSYSR 172
Query: 233 SPVPVYDRRRSPDYGRNRSP 252
SP R RS Y R+ SP
Sbjct: 173 SPSHCRGRGRSWSYSRSLSP 192
>gi|432113649|gb|ELK35931.1| Vascular endothelial zinc finger 1 [Myotis davidii]
Length = 688
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF ++G I ++ GF FV +E+ DA A+ L+
Sbjct: 110 LYVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALN 169
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ +L V A+ + R K R K LFV N D E+
Sbjct: 170 ESDL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 226
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 227 LEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 286
Query: 164 LKDDSER 170
+ D R
Sbjct: 287 QRKDVRR 293
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 76
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 77 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQDLFIQ 130
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S L
Sbjct: 131 FGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDL 173
>gi|320169407|gb|EFW46306.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 200
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 10/78 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDNIP 60
+F+G + +TR +LE +F YGR+ R D+K G F FV FED RDA DA+ N
Sbjct: 3 LFIGRLDRDTRVRDLEDIFQPYGRLVRCDIKGGAVYSFGFVEFEDRRDAEDAL----NRE 58
Query: 61 FGYDRR--RLSVEWARGE 76
G + R R++VEWA+G+
Sbjct: 59 NGRNVRGVRIAVEWAKGQ 76
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----NFAFVQFETQEEATKALESTDR 150
LF+ D TR RD++ F+PYG ++ I+ +F FV+FE + +A AL +
Sbjct: 2 ALFIGRLD-RDTRVRDLEDIFQPYGRLVRCDIKGGAVYSFGFVEFEDRRDAEDALNRENG 60
Query: 151 SKLVDRVISVEYA 163
+ I+VE+A
Sbjct: 61 RNVRGVRIAVEWA 73
>gi|238014292|gb|ACR38181.1| unknown [Zea mays]
gi|413950154|gb|AFW82803.1| hypothetical protein ZEAMMB73_678679 [Zea mays]
gi|448878172|gb|AGE46049.1| arginine/serine-rich splicing factor RS2Z37A transcript I [Zea
mays]
Length = 325
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LFSKYGRI V++K +AF+ F D RDA DA LD D
Sbjct: 13 LYVGRLSPRTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGRDV--D 70
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 71 GSRIIVEFAKG 81
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
L+V P RTR RD++ F YG + V ++R++AF++F +A A + D +
Sbjct: 13 LYVGRLSP-RTRSRDLEYLFSKYGRIREVELKRDYAFIEFSDPRDADDAQYNLDGRDVDG 71
Query: 156 RVISVEYA 163
I VE+A
Sbjct: 72 SRIIVEFA 79
>gi|179074|gb|AAA35564.1| alternative [Homo sapiens]
gi|119614894|gb|EAW94488.1| splicing factor, arginine/serine-rich 1 (splicing factor 2,
alternate splicing factor), isoform CRA_c [Homo sapiens]
Length = 292
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|351713363|gb|EHB16282.1| Splicing factor, arginine/serine-rich 1 [Heterocephalus glaber]
Length = 292
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|149063568|gb|EDM13891.1| splicing factor, arginine/serine rich 9, isoform CRA_a [Rattus
norvegicus]
Length = 124
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERG 78
+G R R+ A G RG
Sbjct: 76 DYGQCRLRVEFPRAYGGRG 94
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 27/167 (16%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS------GFAFVYFEDDRDAADAIRGL 56
+ +FVGN + T + L + F +YG + V + GFAFV F ++A A+
Sbjct: 240 KELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDGRPKGFAFVEFATHKEAQAALDAY 299
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRD----------GSKSMANQRPTKTLFVINFDPIRT 106
+ F + R L + ++ G+ G+ S + + T TLFV N +T
Sbjct: 300 NGQDF--EGRALRINFSGGKPAGAGGPGGNQGGFQRGAPSGGDGQST-TLFVGNIS-FQT 355
Query: 107 RERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALE 146
+ ++RHF G + VR+ + FA V+FE+ E A KALE
Sbjct: 356 TQDSLERHFSKCGPIKAVRVAMGDDGRVKGFAHVEFESPESAQKALE 402
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIE--RVDMK-----SGFAFVYFEDDRDAADAI 53
S +FVGN ++T Q LER FSK G I+ RV M GFA V FE A A+
Sbjct: 342 QSTTLFVGNISFQTTQDSLERHFSKCGPIKAVRVAMGDDGRVKGFAHVEFESPESAQKAL 401
Query: 54 RGLDNIPFGYDRRRLSVEWAR 74
++ P D R L ++ ++
Sbjct: 402 E-MNGAP--CDGRELRLDLSQ 419
>gi|326490411|dbj|BAJ84869.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528339|dbj|BAJ93351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 866
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF ++G I + + GF + + D R A A+R L N
Sbjct: 207 SRTLFVRNINSNVEDSELRSLFEQFGDIRTLYTATKHRGFVMISYFDIRAARGAMRSLQN 266
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 267 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 316
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY--------ALKDD 167
G V +R +++ F++F A AL S ++S++ + I +E +L
Sbjct: 317 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRSLVQH 376
Query: 168 SERDDRYDSPRRGGYGRH----SPYGRSPSPAYRRRPSP 202
+ D PR GY RH SP SP A+ + SP
Sbjct: 377 LGHELEQDEPR--GY-RHSHVGSPMANSPPGAWAQYGSP 412
>gi|111226239|ref|XP_001134500.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|90970421|gb|EAS66817.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 312
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMKS----GFAFVYFEDDRDAADAIRGLDNI 59
+++G ET Q L FSKYG I R D+K +AFV +++ RDA DA++ L+
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGT 61
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMA 88
++SVEWA+G G++ D +K A
Sbjct: 62 TL--LNSKISVEWAKG--GKNADNNKCFA 86
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+ T ++++ HF YG + ++ R +AFV+++ + +A AL++ + + L++ I
Sbjct: 9 SVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTTLLNSKI 68
Query: 159 SVEYALKD-DSERDDRYDSPRRGGYGRHSPYG 189
SVE+A +++ + + + G + + P G
Sbjct: 69 SVEWAKGGKNADNNKCFACGQEGHWIKSCPNG 100
>gi|170596504|ref|XP_001902788.1| RNA-binding protein. [Brugia malayi]
gi|158589316|gb|EDP28363.1| RNA-binding protein., putative [Brugia malayi]
Length = 130
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLD 57
+ +FVG + ELE FSKYGRI++V + GFAF+ FED RDA DA++GLD
Sbjct: 8 LECKVFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFIEFEDSRDAEDAVKGLD 67
>gi|413944557|gb|AFW77206.1| hypothetical protein ZEAMMB73_752942 [Zea mays]
Length = 330
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE +F KYGR+ VDMK F FV F D RDA DA LD F D
Sbjct: 92 LYVGQISPYTRTQDLEDIFRKYGRLRNVDMKREFGFVEFTDPRDADDARHDLDGRIF--D 149
Query: 65 RRRLSVEWARGER 77
L VE+ARG +
Sbjct: 150 GSHLIVEFARGAQ 162
>gi|355754034|gb|EHH57999.1| hypothetical protein EGM_07756 [Macaca fascicularis]
Length = 248
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ Y RL VE+ R RG R GS R ++ V++ P +
Sbjct: 77 -YDYYGYRLRVEFPRSGRGTGRGGSGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>gi|47834693|gb|AAT39000.1| AML1 [Aegilops speltoides]
Length = 869
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 30/218 (13%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N SEL LF ++G I + + GF + + D R A A+R L N
Sbjct: 210 SRTLFVRNINSNVEDSELRSLFEQFGDIRTLYTATKHRGFVMISYFDIRAARGAMRSLQN 269
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 270 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 319
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERD---- 171
G V +R +++ F++F A AL S ++S++ + I +E + + R
Sbjct: 320 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRSLVQH 379
Query: 172 ---DRYDSPRRGGYGRH----SPYGRSPSPAYRRRPSP 202
+ D PR GY RH SP SP A+ + SP
Sbjct: 380 LGHELEDEPR--GY-RHSHVGSPMANSPPGAWAQYGSP 414
>gi|390352206|ref|XP_798746.2| PREDICTED: serine/arginine-rich splicing factor 4-like isoform 2
[Strongylocentrotus purpuratus]
Length = 349
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 40/194 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y+ R+ ++ER F +GRI +++K+GF FV FED RDA DA+ L+ +
Sbjct: 44 VYVGRLSYQARERDVERFFRGFGRIREINLKNGFGFVEFEDYRDADDAVYELNGKELVGE 103
Query: 65 RRRLSVEWARG-ERGR-------HRDGSK----------------------SMANQR--- 91
R+ +E ARG RGR R G K S ++QR
Sbjct: 104 --RVIIEHARGPARGRDEYRYGYRRRGDKFGGEGGGGGGGRGRDGGGGGGGSRSSQRYGP 161
Query: 92 PTKTLFVINFDPIRTRE--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALE 146
P +T F I + + +R +D+K + G V + +N V+F T + A+E
Sbjct: 162 PVRTEFRIVVENLSSRVSWQDLKDYMRQAGEVTFADAHKQHKNEGIVEFATYSDMKNAVE 221
Query: 147 STDRSKLVDRVISV 160
D +++ R I +
Sbjct: 222 KLDGTEINGRRIKL 235
>gi|47680299|gb|AAT37133.1| arginine/serine-rich splicing factor 1 variant 2 [Zea mays]
gi|47680369|gb|AAT37124.1| arginine/serine-rich splicing factor 1 variant 2 [Zea mays]
Length = 50
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG 37
RP+FVGN +Y+TR SEL+ LF +YGR+ER+DMKSG
Sbjct: 2 RPVFVGNLDYDTRHSELDHLFYRYGRVERIDMKSG 36
>gi|226291029|gb|EEH46457.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 273
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV-------DMKSGFAFVYFEDDRDAADAIRGLD 57
I++GN +E +L+R SK+G I V M GFA+V F D DAA+A
Sbjct: 85 IYIGNLFFEVTADDLKRDLSKFGNILAVRIVYDSRGMSRGFAYVQF-DSIDAAEAAINEM 143
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
N+ Y+ RR+ V ++ RG + + + +N+ PT+TLF+ N +R++ F+
Sbjct: 144 NMTI-YEGRRVVVNYS--SRG-SANPTPTRSNE-PTRTLFIGNLS-FEMSDRELNELFKD 197
Query: 118 YGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169
NV VR+ R FA F E A A E R + ++Y+ S
Sbjct: 198 IKNVTDVRVSVDRRTGQPRGFAHADFLDVESAQAAFEILKDKAPYGRPLRLDYSF---SS 254
Query: 170 RDDRYDSPRRGGYGRHSPY 188
RD+ D R G G + Y
Sbjct: 255 RDNTVDRLRDVGSGSNETY 273
>gi|395861189|ref|XP_003802876.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Otolemur
garnettii]
Length = 332
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 128
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 129 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 174
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 175 GDFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|47229663|emb|CAG06859.1| unnamed protein product [Tetraodon nigroviridis]
Length = 3147
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
+R +F+GN E T +L +F ++G I +D+K +AFV + D AI+ +
Sbjct: 433 TRTLFIGNLEKTTSYQQLLDIFQRFGEIVDIDIKKVNGVPQYAFVQYSDIASVCKAIKKM 492
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
D G +R +L KSM PT +++ P T E+ + RHF
Sbjct: 493 DGEYLGSNRLKLGF-------------GKSM----PTTCVWLDGLAPNIT-EQYLTRHFC 534
Query: 117 PYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
YG+V+ V R A + + + A A+ T K+ I V++A ++
Sbjct: 535 RYGHVVKVVFDRLKGMALILYNNTDFAQAAVRETKGWKIGGNKIKVDFASQE 586
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E+LF+ YG+I + D KS GF FV FE+ A A+ L+
Sbjct: 234 IYVKNIDLNYSEESFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELN 293
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 294 DKEI--NGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEK- 350
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+ +G + ++ + F FV F T EEATKA+ + + + + V A
Sbjct: 351 LEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 410
Query: 164 LKDDSER 170
+ D R
Sbjct: 411 QRKDVRR 417
>gi|325185984|emb|CCA20488.1| RNAbinding protein putative [Albugo laibachii Nc14]
Length = 754
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVD-----------MKSGFAFVYFEDDRDAADAI 53
+ + N + TR+S LE FSK+G++ +V + GF FV F D+ DA A+
Sbjct: 547 LCLKNLSFTTRESTLETYFSKFGKLRKVTIAKSRDKRGGILSMGFGFVEFADENDAQRAL 606
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRH---RDGSKSMANQRPTKTLFVINFDPIRTRERD 110
+ D L V ++ + R +DG + T + + N D
Sbjct: 607 SASEQSSPIIDGHSLRVTLSQKKVERKTSDKDG-------KSTSKIIIRNV-AFEATVHD 658
Query: 111 IKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
I+ +G + VR+ R FAFV+F T++EA A S +S L R + +E+A
Sbjct: 659 IRSLCGAFGQLKRVRMPKKFDGRHRGFAFVEFMTEQEAKDAFNSLCKSHLYGRHLVLEWA 718
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 148
LFV N P E D++ FE +G V V I R+ F FV F+T +A KAL++
Sbjct: 245 LFVRNL-PFSAVEEDLRTIFEAFGKVAEVHIPLDETKRRKGFGFVSFDTVSDAQKALQNV 303
Query: 149 DRSKLVDRVISVEYA 163
D RV+ V +A
Sbjct: 304 DGIAFQGRVLYVTFA 318
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLD 57
+FV N + + +L +F +G++ V + + GF FV F+ DA A++ +D
Sbjct: 245 LFVRNLPFSAVEEDLRTIFEAFGKVAEVHIPLDETKRRKGFGFVSFDTVSDAQKALQNVD 304
Query: 58 NIPF 61
I F
Sbjct: 305 GIAF 308
>gi|328871249|gb|EGG19620.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
R I+VG F T + +LE F K+G+I +DMK+GFAFV F++++ A AI +D
Sbjct: 60 RRIYVGKFSSRTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMDGKEV- 118
Query: 63 YDRRRLSVEWARGERGRHRD 82
D +L V+ + G R R D
Sbjct: 119 -DGEKLIVQKSHGGRKRSSD 137
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVD 155
++V F RT E+D++ F+ +G +L + ++ FAFV+F+ ++ A +A++ D K VD
Sbjct: 62 IYVGKFSS-RTGEKDLEETFKKFGKILSLDMKAGFAFVEFDNEKSANQAIDEMD-GKEVD 119
Query: 156 --RVISVEYALKDDSERDDRYDSPRRGGYGRHSP 187
++I + D+ Y RG + R+ P
Sbjct: 120 GEKLIVQKSHGGRKRSSDECYLCRGRGHWARNCP 153
>gi|8497|emb|CAA41556.1| SRp55 [Drosophila melanogaster]
Length = 350
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARGE-RGRH-----------RDGSKSMANQR-------PTKT---LFVINFD 102
R+ VE ARG RG + R G N++ P +T L V N
Sbjct: 66 --RVVVEPARGSARGSNRDRYDDRYGGRRGGGGGRYNEKSSSRYGPPLRTEYRLIVENLS 123
Query: 103 PIRTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
R +D+K + G V + + RRN V+F + + A+E D ++L R I
Sbjct: 124 S-RVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH 182
Query: 160 V 160
+
Sbjct: 183 L 183
>gi|313227858|emb|CBY23007.1| unnamed protein product [Oikopleura dioica]
Length = 336
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
+F+GN ++E F K+GRI+ + +K+GF FV F+D RDA DAI ++
Sbjct: 3 KVFIGNLTDRAEGRDVEDAFRKFGRIKEISLKNGFGFVEFDDVRDAEDAIHEMNGERLCG 62
Query: 64 DRRRLSVEWAR--------------GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109
D R++VE A+ R H D +S +RP +T + + D + +R
Sbjct: 63 D--RITVELAKGGGGGGRDRSRSRSRGRSSHWDSRRS-GRERPHRTPYAVMVDNLSSRCT 119
Query: 110 --DIKRHFEPYGNVL----HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
++K F +G V H R V F T+EE + L+ + + R I V
Sbjct: 120 WAELKDIFRKFGEVTYTDAHYRSGDGRGEVCFATREEQDRCLDEAEGMDINGRSIKV 176
>gi|291407986|ref|XP_002720309.1| PREDICTED: splicing factor, arginine/serine-rich 1 [Oryctolagus
cuniculus]
Length = 343
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + E++ +F KYG + VD+K+ FAFV F RDA +A+ G D
Sbjct: 17 IYVGNLPPDIGTREVKDMFYKYGTVRDVDLKNRRWGRPFAFVEFNSPRDAHNAVHGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDG-----SKSMANQRPTKTLFVINFDPIRTRERDIKRH 114
+ Y+ RL VE+ R R + G ++ +++R + V P + + D+K H
Sbjct: 76 -YDYEGYRLRVEFPRNYRAIYGGGRGLLETRGTSSRRSDNRVLVSGLPPSGSWQ-DLKDH 133
Query: 115 FEPYGNVLHVRIRRNFA-FVQFETQEEATKALESTDRSKL 153
G V + +RR+ + V+F +E+ + A+ + +K
Sbjct: 134 MREAGYVCYAAVRRDGSGVVEFVWKEDMSYAVRKLNNTKF 173
>gi|221057011|ref|XP_002259643.1| Splicing factor [Plasmodium knowlesi strain H]
gi|193809715|emb|CAQ40417.1| Splicing factor, putative [Plasmodium knowlesi strain H]
Length = 312
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNI 59
I+VGN ++E F KYG I + D+K + FAF+ FED RDAADAI+ D
Sbjct: 10 IYVGNLPSHVSPRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGS 69
Query: 60 PFGYDRRRLSVEWARGERGRH---RDGSKSMANQRPTKTLFVINFD--PIRTRERDIKRH 114
+G ++ R+ V + + G++ R + +V+ P+ +D+K H
Sbjct: 70 DYGGNKLRVEVPFNARDNGKYGPRGGRGMMGRGMRSRRGRYVVEVSGLPLSGSWQDLKDH 129
Query: 115 FEPYGNVLHVRIRRN-FAFVQFETQEEATKALE 146
G H + +N V F +E+ +A+E
Sbjct: 130 LREAGECGHADVFKNGIGEVSFFHKEDMLEAIE 162
>gi|222137596|gb|ACM45325.1| rbp1-like RNA-binding protein PB [Bombyx mori]
Length = 159
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLD 57
+S ++VGN + E+E++FSKYG I V + GFAFV FED RDA D++RGLD
Sbjct: 9 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 68
Query: 58 NIPFGYDRRRLSVEWARGERGR 79
R R+ + R R R
Sbjct: 69 GTRCCGTRIRVEMSNGRTRRDR 90
>gi|440898381|gb|ELR49895.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Bos grunniens
mutus]
Length = 262
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 58
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 59 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 104
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 105 GEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
>gi|357516359|ref|XP_003628468.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
gi|355522490|gb|AET02944.1| Pre-mRNA-splicing factor SF2 [Medicago truncatula]
Length = 273
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 25 KYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79
KYG I +D+K G+AFV FED +DA DAIRG D + +D RL VE A G RG
Sbjct: 2 KYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDG--YDFDGHRLRVEAAHGGRGN 59
Query: 80 ---------HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---- 126
H +G R ++ ++N P +D+K H G+V ++
Sbjct: 60 SSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDG 119
Query: 127 RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD-DSERDDRYDSPRRG 180
R V + ++ A++ D S+ + +++ DS RD R SP RG
Sbjct: 120 RGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSR--SPGRG 172
>gi|149390510|gb|ABR25316.1| splicing factor [Oryza sativa Indica Group]
Length = 209
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LE LF +YGR+ VDMK FAFV F D RDA +A LD F D
Sbjct: 20 LYVGRLSSRTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDF--D 77
Query: 65 RRRLSVEWARG 75
R+ VE+A+G
Sbjct: 78 GSRMIVEFAKG 88
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++ F YG V +V ++ FAFV+F +A +A + D + VE+A
Sbjct: 28 RTRTRDLEDLFGRYGRVRYVDMKHEFAFVEFSDARDADEARYNLDGRDFDGSRMIVEFA 86
>gi|170087376|ref|XP_001874911.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650111|gb|EDR14352.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 297
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60
MSR +++G + R ++ + F YGRI + +GF FV FE+ +DA DA+ + P
Sbjct: 1 MSRRLYLGRLPTDARSDDVSKFFDGYGRIIDCRVMTGFGFVEFENAKDAEDAVHNFNGKP 60
Query: 61 F-GYDRRRLSVEWARGERGR------HRDGSKSMA--NQRPTKTLFVINFDPIRTRERDI 111
F G + + VE+A+ R R R G A ++RP +++ T +D+
Sbjct: 61 FMGVN---IVVEFAKESRPRREVYDNDRGGGGHGAPRSRRPPGIRLIVSGVSRDTSWQDL 117
Query: 112 KRHFEPYGNVLHVRIRRNF---AFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166
K G+V I R+ +++ ++E+A +A++ D L R + V AL D
Sbjct: 118 KDFGRDAGSVSFADIDRDVPGQGVLEYLSREDADRAVKELDGKDLRGRPVRV--ALDD 173
>gi|384489930|gb|EIE81152.1| hypothetical protein RO3G_05857 [Rhizopus delemar RA 99-880]
Length = 293
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV---------DMKSGFAFVYFEDDRDAADAIRG 55
++VGN Y T + F+ G I RV + GFA+++F + A AI
Sbjct: 94 VWVGNLSYSTTVETIRNFFTDCGSITRVKCPKGNGVKNKNKGFAYIFFATTEEQAKAIAK 153
Query: 56 LDNIPFGYDRRRLSV------EWARGERGRHRDGSKSMANQR--PTKTLFVINFDPIRTR 107
+ G R L + E A G + K + Q+ P T+F+ N T
Sbjct: 154 SEQELEG---RSLLIKDAENFERADGSKAPTEAEKKEIKKQKNPPCPTIFLGNLS-FDTT 209
Query: 108 ERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ I+ FE G++ VR+ + FA+V + T E ATKA+ + D+ R
Sbjct: 210 EKSIREAFEWAGDIRKVRVATFEDSGKCKGFAYVDYHTVEAATKAIRAPDKHTFDGRKCR 269
Query: 160 VEYA 163
VE+A
Sbjct: 270 VEFA 273
>gi|56797744|ref|NP_001008732.1| serine/arginine-rich splicing factor 6b [Danio rerio]
gi|56541079|gb|AAH86820.1| Splicing factor, arginine/serine-rich 6b [Danio rerio]
Length = 355
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R F YG++ D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARG 75
R+ VE ARG
Sbjct: 64 --RVIVEHARG 72
>gi|301777376|ref|XP_002924104.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ailuropoda melanoleuca]
Length = 261
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG ++T + +L+ F+K+G + +K GF F+ F +DAA + L
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKVL 57
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQR-PTKTLFVINFDPIRTRERDIKRHF 115
D RL GR D K+MA ++ P K +FV +P T E+ I+ +F
Sbjct: 58 DQ-----KEHRLD--------GRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEK-IREYF 103
Query: 116 EPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146
+G + + + RR F F+ F+ +E K LE
Sbjct: 104 GEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 142
>gi|47680307|gb|AAT37137.1| arginine/serine-rich splicing factor 2 variant 1 [Zea mays]
gi|47680374|gb|AAT37128.1| arginine/serine-rich splicing factor 2 variant 1 [Zea mays]
Length = 62
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG 37
RP+FVGN +Y+TR SEL+RLF +YGR+ER+D+KSG
Sbjct: 2 RPVFVGNLDYDTRHSELDRLFYRYGRVERIDIKSG 36
>gi|347972223|ref|XP_315232.3| AGAP004592-PA [Anopheles gambiae str. PEST]
gi|347972225|ref|XP_003436861.1| AGAP004592-PH [Anopheles gambiae str. PEST]
gi|333469344|gb|EAA10559.4| AGAP004592-PA [Anopheles gambiae str. PEST]
gi|333469351|gb|EGK97262.1| AGAP004592-PH [Anopheles gambiae str. PEST]
Length = 345
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG Y R+ +LER F YGR + +K+G+ FV FED RDA DA+ L+ +
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 65
Query: 65 RRRLSVEWARG-ERG------------------RHRDGSKSMANQRPTKTLFVINFDPIR 105
R+ VE ARG RG ++ S+ R L V N R
Sbjct: 66 --RVVVEPARGTARGPSGYRERDRYDRDRRGGRYDKNSSRYGPPLRTEYRLVVENL-STR 122
Query: 106 TRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N V+F T + A+E D ++L R I
Sbjct: 123 VSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRI 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,612,740,443
Number of Sequences: 23463169
Number of extensions: 218055494
Number of successful extensions: 636736
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2378
Number of HSP's successfully gapped in prelim test: 16042
Number of HSP's that attempted gapping in prelim test: 573295
Number of HSP's gapped (non-prelim): 52243
length of query: 268
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 128
effective length of database: 9,074,351,707
effective search space: 1161517018496
effective search space used: 1161517018496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)