BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024366
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 354 bits (908), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 192/273 (70%), Positives = 219/273 (80%), Gaps = 19/273 (6%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
RP+FVGNFEYETRQS+LERLF KYGR++RVDMKSG+AFVYFED+RDA DAIR LDN PFG
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122
Y++RRLSVEWA+GERGR R +K+ +N +PTKTLFVINFDPIRT+E DI++HFEPYG V
Sbjct: 62 YEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVT 121
Query: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYD--SPRRG 180
+VRIRRNF+FVQFETQE+ATKALE+T RSK++DRV+SVEYALKDD ERDDR SPRR
Sbjct: 122 NVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRS 181
Query: 181 GYG----RHSP-YGRSPSPAYRRRPSPDYGRGRSPAYDRYNGP-VYDQRRSPDHGRHRSP 234
R SP YGR PSP RRPSPDYGR RSP YDRY GP Y++RRSPD+G
Sbjct: 182 LSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYG----- 236
Query: 235 VPVYDRRRSPDYGRNRSPNFGRYRSRSPVRRSR 267
RRS DYGR RSP + RYRSRSPV R R
Sbjct: 237 ------RRSSDYGRQRSPGYDRYRSRSPVPRGR 263
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 184/274 (67%), Gaps = 14/274 (5%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+ +LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD FG
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMAN----QRPTKTLFVINFDPIRTRERDIKRHFEPY 118
RRL VEW + ERG + RP+KTLFVINFD TR RD+++HFEPY
Sbjct: 62 RKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPY 121
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPR 178
G +++VRIRRNFAF+Q+E QE+AT+AL++++ SKL+D+VISVEYA+KDD R + + SP
Sbjct: 122 GKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH-SPE 180
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVY 238
R RSPSP R R SPDYGRG SP +R SPD+GR RSP P
Sbjct: 181 RRRDRSPERRRRSPSPYKRERGSPDYGRGASPV-----AAYRKERTSPDYGRRRSPSPYK 235
Query: 239 DRRR-SPDYGRNRSPNFG---RYRSRSPVRRSRT 268
RR SP+YGR+R N R R SP + SR+
Sbjct: 236 KSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRS 269
>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana
GN=RSP41 PE=1 SV=2
Length = 356
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 181/281 (64%), Gaps = 28/281 (9%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62
+P+F GNFEY+ R+S+LERLF KYG++ERVDMK+GFAFVY ED+RDA DAIR LD +G
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYG 61
Query: 63 YDRRRLSVEWARGERGRHRDGSKSMANQRPT---KTLFVINFDPIRTRERDIKRHFEPYG 119
RRL VEW + +RG S + KTLFVINFD TR RD++RHFEPYG
Sbjct: 62 RTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYG 121
Query: 120 NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRYDSPRR 179
+++VRIRRNFAF+Q+E QE+AT+AL++T+ SKL+D+VISVEYA+KDD R + Y SP R
Sbjct: 122 KIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY-SPER 180
Query: 180 GGYGRHSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGR-HRSPVPVY 238
RSPSP R R SPDYGRG SP + +R SPD+GR RSP P
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKR------ERTSPDYGRGRRSPSPYK 234
Query: 239 DRRRSPDYG-----------------RNRSPNFGRYRSRSP 262
R SPDY RNRSP GR SRSP
Sbjct: 235 RARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 123/287 (42%), Gaps = 41/287 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
IFVGN T E+ LFS+YG+I D+ F FV+ + +A +AI+ L + + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--YMLN 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++G+ + + L V N T + +++ FE YG V+
Sbjct: 62 GMAMNVEMSKGK-------------PKTSTKLHVGNISSSCTNQ-ELRAKFEEYGPVVEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D + +++SV+ + ER Y +
Sbjct: 108 DIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQ 167
Query: 179 RGGYGRHSPYGRSPSPAYRRRPSP--------DYGRGRSPAYDR-YNG-PVYDQRRSPDH 228
G + + P ++ S YR PS D G R + R ++G P Y +P H
Sbjct: 168 EGHWSKECPLDQNGS--YREGPSSEGFGPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSH 225
Query: 229 GRHRS---PVPVYDR----RRSPDYGRNRSPNFGRYRSRSPVRRSRT 268
G R VP Y R + YG G S +PV S
Sbjct: 226 GFTRGAGYAVPGYGRGAGFESAMGYGMPAGYGVGADNSMAPVYGSEA 272
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AI GLDN F
Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGDSLY 210
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P RS A + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKT-LFVINFDPIRTRERDIKRHFEPYGNVLH 123
++VE ++ N+ T T L V N P T ++++ FE YG V+
Sbjct: 62 GVNINVEASK--------------NKSKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIE 106
Query: 124 VRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSP 177
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y
Sbjct: 107 CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
Query: 178 RRGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
+ G + + P RS A + + YG R+P Y +Y
Sbjct: 167 KEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R+P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN + +T+ +EL LF KYG + D+ + FV+ E ++ DAI+ L+ + +
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNG--YTLN 66
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
+ VE A+ R A PT +FV N +TR +++ F+ YG V+
Sbjct: 67 EFAIKVEAAKSRR----------APNTPTTKIFVGNLTD-KTRAPEVRELFQKYGTVVEC 115
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVD 155
I RN+ FV + + A++ + ++VD
Sbjct: 116 DIVRNYGFVHLDCVGDVQDAIKELN-GRVVD 145
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ A G RG S++ R + +++ P +D+K H G
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 135
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 136 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 170
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+F+GN E + E+ LF +YG++ D+ + FV+ ED A DAIR L + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHH--YKLH 61
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 124
++VE ++ +KS A+ + L V N P T + +++ FE YG V+
Sbjct: 62 GVNINVEASK---------NKSKASTK----LHVGNISPTCTNQ-ELRAKFEEYGPVIEC 107
Query: 125 RIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK------DDSERDDRYDSPR 178
I +++AFV E E+A +A+ D ++ + + V+ + ++ Y +
Sbjct: 108 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGK 167
Query: 179 RGGYGRHSPYGRSPSPA-YRRRPSPDYGRGRSPAYDRYNGPVY 220
G + + P R+ A + + + YG R P Y +Y
Sbjct: 168 EGHWSKECPVDRTGRVADFTEQYNEQYGAVRPPYTMGYGESMY 210
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61
S + VGN EL F +YG + D+ +AFV+ E DA +AIRGLDN F
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Query: 62 GYDRRRLSVEWAR 74
R + + +R
Sbjct: 137 QGKRMHVQLSTSR 149
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG 119
+G R R+ G RG G+++ R + +++ P +D+K H G
Sbjct: 77 DYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAG 136
Query: 120 NVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
+V + ++++ V++ +E+ AL D +K
Sbjct: 137 DVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKF 171
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 24/188 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N + ET Q E E LF KYG+I ++ GF FV FED AA A+ L+
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ F ++L V A+ + R ++ K R K LFV N D E+
Sbjct: 281 ELEF--KGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F P+G + ++ R+ F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSERD 171
+ + R+
Sbjct: 398 QRKEVRRN 405
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I++ N L FS +G I + + GF FV+FE++ DA DAI +D
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVD 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ +++ ++ +R + K+ ++V N D T + + + F
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKLEEVKAKFT-----NVYVKNIDQ-ETSQEEFEELFGK 241
Query: 118 YGNVLHVRIR-------RNFAFVQFETQEEATKALESTDR 150
YG + + R F FV FE A KA++ +
Sbjct: 242 YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNE 281
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 25/173 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y+ R+ ++ER F YG+I VD+K+G+ FV F+D RDA DA+ L+ +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-------------PTKT---LFVINFDPIRTRE 108
R+ VE ARG R RDGS PT+T L V N R
Sbjct: 64 --RVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSS-RCSW 117
Query: 109 RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K + G V + + R+N ++F + + +ALE D +++ R I
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
I+V N + ET E E+LFS+YG I ++ GF FV F D AA A+ L+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
F + L V A+ + R + K R K LF+ N D E+
Sbjct: 293 GKEF--KSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK- 349
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
+K F PYG + R+ R+ F FV F + EEATKA+ ++ + + + V A
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIA 409
Query: 164 LKDDSER 170
+ D R
Sbjct: 410 QRKDVRR 416
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N L FS +G + + GF FV+F+++ DA DAI ++
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ +++ + +R + +K+ ++V N D + T + + ++ F
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKLEEAKA-----NFTNIYVKNID-VETTDEEFEQLFSQ 253
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISV 160
YG ++ + ++ F FV F A KA+E + + + + V
Sbjct: 254 YGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IKR F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
+FVG + + EL +F GRI + + G+AFV + +A A+R L+
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELN 132
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
N Y+ R GR S+ N R LF+ ++ R ++ +
Sbjct: 133 N----YEIR----------PGRLLGVCCSVDNCR----LFIGGIPKMKKRGEILEEIAKV 174
Query: 118 YGNVLHVRI---------RRNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYA 163
VL+V + R FAFV++E+ A A R +L I+V++A
Sbjct: 175 TEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 231
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57
++V N ET + ++R F ++ G +ERV +AFV+F DA A+ L+
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLN 302
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGL 56
SR ++VGN + R+ E+E LFSKYG + ++D+K G+AFV F+D RDA DAI G
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMAN-----------------QRPTKTLFVI 99
D + +D RL VE A G R D S R ++ ++
Sbjct: 66 DG--YDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 100 NFDPIRTRERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDRSKL 153
P +D+K H G+V ++ R+ V + E+ AL+ D ++
Sbjct: 124 TGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ ++ER YG+I + MK GFAFV FED RDA DA LD
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGS 63
Query: 65 RRRLSVEWARGE-RGRHRDG 83
RL VE ARG+ RG R G
Sbjct: 64 SMRLVVEMARGKPRGNDRHG 83
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149
P RERD++R + YG + ++ ++ FAFV FE +A A D
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLD 56
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTL 96
GFAFV +E R AA A R L +++V+WA E D +++ K L
Sbjct: 195 GFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV------KIL 248
Query: 97 FVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154
+V N I T E IK+ F + G V V+ R++AFV F ++E+A A+ + + ++L
Sbjct: 249 YVRNLM-IETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELE 307
Query: 155 DRVISVEYALKDDSERDDRYDSPRRGGYGRHSPYGRSPSPAYRRRP 200
+ V A D E+ RY +GG G + PS Y P
Sbjct: 308 GSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDP 353
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
+FVG + + EL +F GRI + + G+AFV + +A A+R L+
Sbjct: 73 VFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELN 132
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
N Y+ R GR S+ N R LF+ ++ R ++ +
Sbjct: 133 N----YEIR----------PGRLLGVCCSVDNCR----LFIGGIPKMKKRGEILEEIAKV 174
Query: 118 YGNVLHVRI---------RRNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYA 163
VL+V + R FAFV++E+ A A R +L I+V++A
Sbjct: 175 TEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 231
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKY--GRIERVDMKSGFAFVYFEDDRDAADAIRGLDN 58
++V N ET + +++ F ++ G +ERV +AFV+F DA A+ L+
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNG 303
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 27/177 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ VD+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKT---LFVINFDPI 104
R+ VE ARG R R RDG + P +T L V N
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSS- 119
Query: 105 RTRERDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
R +D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 120 RCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3
OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG----FAFVYFEDDRDAADAIRGLDN 58
+ ++VGN + R+ E+E +F KYGRI+ VD+KSG FAFV FED RDA DA+R D
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
Query: 59 IPFGYDRRRLSVEWA 73
F D RR+ VE+
Sbjct: 69 YEF--DGRRIRVEFT 81
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
+++ N ET E E L +K+G+ + V ++ GF FV F + DA + L+
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELN 277
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
N F + L V A+ + R ++ K R K LF+ N D ++
Sbjct: 278 NTEF--KGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDD-SIDDKK 334
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 335 LEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 394
Query: 164 LKDDSER 170
+ D R
Sbjct: 395 QRKDVRR 401
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADA 52
+S ++VG+ + ++ L +FS G + + G+A+V F D A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 53 IRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112
I L+ P + + W++ + + G+ + +F+ N P + +
Sbjct: 93 IEKLNFTPI--KGKLCRIMWSQRDPSLRKKGAGN---------IFIKNLHP-DIDNKALY 140
Query: 113 RHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +GN+L ++ + F +V FE E A++A+++ + L + I V
Sbjct: 141 DTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKSGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + GF +V+FE+D A++AI L+
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALN 184
Query: 58 NIPFGYDRRRLSVEWARGER-GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ + ++ ER + + + N +++ N + T +++ +
Sbjct: 185 GMLLNGQEIYVGPHLSKKERESKFEEMKANFTN------VYIKNIN-TETTDKEFEELVA 237
Query: 117 PYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD--- 166
+G V + R F FV F E+A K +E + ++ + + V A K
Sbjct: 238 KFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYER 297
Query: 167 DSERDDRYDSPR 178
E +Y++ R
Sbjct: 298 QQELKKQYEATR 309
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R+ +LE LF KYGRI +++K+ FAFV FED RDA DAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLF--VINFDPIRTRERDIKRHFEP 117
+ Y + RL VE+ R GR ++ F +++ P +D+K H
Sbjct: 75 -YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE 133
Query: 118 YGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
G+V + ++++ V++ +E+ AL D +K
Sbjct: 134 AGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF 170
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
+++G Y R+ +++R FS YGR+ +D+K+G+ FV FED RDA DA+ L+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 65 RRRLSVEWARGERGRHRDGSKSMANQR-----------------PTKTLFVINFDPIRTR 107
R+ VE ARG R R RDG + P +T F + + + +R
Sbjct: 64 --RVIVEHARGPR-RDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 108 E--RDIKRHFEPYGNVLHV---RIRRNFAFVQFETQEEATKALESTDRSKLVDRVI 158
+D+K G V + + R N ++F + + +AL+ D +++ R I
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + E + +L++LF+ YG I + ++ GF FV +E A A+ L+
Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELN 294
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K N R K LF+ N D E+
Sbjct: 295 DKEI--NGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK- 351
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + R+ + F FV F + EEATKA+ ++ + + V A
Sbjct: 352 LEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALA 411
Query: 164 LKDDSER 170
+ D R
Sbjct: 412 QRKDVRR 418
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAIRGL 56
++VG ++ L +FS G++ + V KS G+A+V + D AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ P + R + W++ + R G + +F+ N P + + F
Sbjct: 114 NYSPI--EGRPCRIMWSQRDPSARRSGDGN---------IFIKNLHP-AIDNKALHDTFS 161
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+G +L ++ + F FV +ET E A A+E+ + L DR + V
Sbjct: 162 TFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 82 DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFV 133
+G+ S T +L+V + E + F P G V +R+ R+ +A+V
Sbjct: 40 EGADSANVAESTASLYVGELN-TSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 134 QFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+ E+ KA+E + S + R + ++ +D S R
Sbjct: 99 NYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSAR 135
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV------DMKS-GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E+LFS +G+I + D KS GF FV FED A A+ L+
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 295 DKEI--NGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEK- 351
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ + + + + V A
Sbjct: 352 LEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Query: 164 LKDDSER 170
+ D R
Sbjct: 412 QRKDVRR 418
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V + D AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P + R + W++ + R G + +F+ N P + +
Sbjct: 111 EELNYNPI--EGRPCRIMWSQRDPSARRSGDGN---------IFIKNLHP-AIDNKALHD 158
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L ++ + F FV +ET E A A+E+ + L DR + V
Sbjct: 159 TFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 61/302 (20%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++ N + + + E ++LF YG+I + ++ GF FV FE+ A A+ L+
Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELN 293
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K N R K LF+ N D E+
Sbjct: 294 DKEI--NGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEK- 350
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G++ R+ + F FV F + EEATKA+ ++ + + + V A
Sbjct: 351 LEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALA 410
Query: 164 LKDDSERDD------------RYDSPRRGGYGRHSPYGRSPSPAYRRRPS--PDYGRGRS 209
+ D R ++ GG P P Y ++P P GRG
Sbjct: 411 QRKDVRRSQLEQQIQARNQMRMQNAAATGGI----PGQFIPPMFYGQQPGFFPPNGRGNG 466
Query: 210 PAYDRYNGPVYD-----------QRRSPDHGRHRSPVPVYDRRRSPDYGR--NRSPNFGR 256
P + GP Q + P G + PVPVY P YG N N GR
Sbjct: 467 P----FPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYG--MPPVYGGDFNNGANGGR 520
Query: 257 YR 258
+
Sbjct: 521 QQ 522
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V F D AI
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ + R + W++ + R+G + +F+ N P + +
Sbjct: 110 EDLNYSLI--EGRPCRIMWSQRDPSLRRNGDGN---------IFIKNLHP-AIDNKALHD 157
Query: 114 HFEPYGNVLHVR-------IRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L + I + F FV +ET E A A+E+ + L DR + V
Sbjct: 158 TFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYV 211
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 71 EWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN- 129
E + G + + S + +L+V +P E + F P G V +R+ R+
Sbjct: 28 ETEQTASGETEEAADSAQVSDTSASLYVGELNP-SVNEALLFEIFSPIGQVASIRVCRDA 86
Query: 130 -------FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
+A+V F E+ KA+E + S + R + ++ +D S R
Sbjct: 87 VTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDF--D 70
Query: 65 RRRLSVEWARGE-RGRHRDGSK 85
R++VE +RG RG +GS+
Sbjct: 71 GSRITVEASRGAPRGSRDNGSR 92
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKA 144
RTR RD++R F YG V V ++R++AFV+F +A A
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYD 64
++VG TR +LERLFS+YGR+ VDMK +AFV F D RDA DA LD F D
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDF--D 70
Query: 65 RRRLSVEWARG 75
R++VE++RG
Sbjct: 71 GSRITVEFSRG 81
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 105 RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
RTR RD++R F YG V V ++R++AFV+F +A A D I+VE++
Sbjct: 21 RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRI-ERVDMK------SGFAFVYFEDDRDAADAIRGLD 57
++V N T +L+ F +YG+I V MK GF FV FE+ DAA A+ L+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 58 NIPFGYDRRRLSVEWARG-----------ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 106
F D + EW G R R+ K A++ + L+V N DP +
Sbjct: 277 GHKF--DDK----EWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSIS 330
Query: 107 RERDIKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVIS 159
E+ +K F P+G V ++ R+ FV F T EEAT+A+ + + +
Sbjct: 331 DEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 160 VEYA 163
V A
Sbjct: 390 VAIA 393
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 27/171 (15%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERV----DMKS----GFAFVYFEDDRDAADAIRGL 56
++VG+ ++ S+L F + G + V D+ + G+ +V F + +DAA AI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 57 DNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116
+ IP Y + + V ++ HRD S + +F+ N D + + F
Sbjct: 98 NYIPL-YG-KPIRVMYS------HRDPS---VRRSGAGNIFIKNLDE-SIDHKALHDTFS 145
Query: 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
+GN++ ++ + + FVQ+ +E A KA+E + L D+ + V
Sbjct: 146 SFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + G+ FV + ++ A AI L+
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ + + R ER S AN+ ++V N T + D+K F
Sbjct: 186 GMLLNDKQVYVGPFLRRQER-------DSTANKTKFTNVYVKNLAE-STTDDDLKNAFGE 237
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDR 156
YG + + ++ F FV FE ++A +A+ES + K D+
Sbjct: 238 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ V++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
++V N ET + + LF+K+G I ++ GF FV +E DA A+ L+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT-------LFVINFDPIRTRERD 110
+ + +L V A+ + R K R K LFV N D E+
Sbjct: 281 DSEL--NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK- 337
Query: 111 IKRHFEPYGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F PYG + ++ R F FV F T EEATKA+ ++ + + + V A
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 164 LKDDSER 170
+ D R
Sbjct: 398 QRKDVRR 404
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
IF+ N + L FS +G I + + GF FV+FE++ A +AI L+
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117
+ ++ +R ER + +K+ L+V N + T E+ + F
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYT-----NLYVKNINSETTDEQ-FQELFAK 241
Query: 118 YGNVLHVRIRRN-------FAFVQFETQEEATKALESTDRSKL 153
+G ++ + ++ F FV +E E+A KA+E+ + S+L
Sbjct: 242 FGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSEL 284
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV--------DMKSGFAFVYFEDDRDAADAI 53
S ++VG+ E ++ L +FS G + + G+A+V F D AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P R + W++ + + GS + +F+ N P + +
Sbjct: 97 EQLNYTPI--KGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHP-DIDNKALYD 144
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G++L +I + F FV FE + A +A+++ + L + I V
Sbjct: 145 TFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 198
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 83 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--------FAFVQ 134
GS+S + + + +L+V + +P E + F P G+V +R+ R+ +A+V
Sbjct: 27 GSESQSVENSSASLYVGDLEP-SVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 85
Query: 135 FETQEEATKALESTDRSKLVDRVISVEYALKDDSER 170
F E KA+E + + + R+ + ++ +D S R
Sbjct: 86 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLR 121
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-------GFAFVYFEDDRDAADAIRGLD 57
I+V N + + E E LF+ +G+I + ++ GF FV FE+ AA A+ L+
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 58 NIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTK-------TLFVINFDPIRTRERD 110
+ + +++ V A+ +R R + K R K LFV N D E+
Sbjct: 310 DKEI--NGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEK- 366
Query: 111 IKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163
++ F+P+G + ++ + F FV F T EEATKA+ ++ + + + V A
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 164 LKDDSER 170
+ D R
Sbjct: 427 QRKDVRR 433
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRI-------ERVDMKS-GFAFVYFEDDRDAADAI 53
S ++VG ++ L +FS G++ + V KS G+A+V + D AI
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 54 RGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKR 113
L+ P + R + W++ + R G + +F+ N P + +
Sbjct: 126 EELNYTPV--EGRPCRIMWSQRDPSARRSGDGN---------IFIKNLHP-AIDNKALHD 173
Query: 114 HFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160
F +G +L V++ + F FV +ET+E A A+ES + L DR + V
Sbjct: 174 TFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV 227
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 5 IFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN + +T EL LF+ YG + + FAFV+ ++ A AI L G+
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALH----GH 58
Query: 64 DR---RRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
+ R L VE +R RP T +FV N T + +++ FE
Sbjct: 59 ELRPGRALVVEMSR---------------PRPLNTWKIFVGNVSAACTSQ-ELRSLFERR 102
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G V+ + +++AFV E + +A A+ + ++ + I+VE + K
Sbjct: 103 GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL LF + GR+ D+ +AFV+ E + DA AI
Sbjct: 70 MSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 129
Query: 54 RGLDNIPFGYDRRRLSVEWA-RGER 77
L+ +R++VE + +G++
Sbjct: 130 AQLNGKEV--KGKRINVELSTKGQK 152
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 5 IFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN + +T EL LF+ YG + + FAFV+ ++ A AI L G+
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALH----GH 58
Query: 64 DR---RRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
+ R L VE +R RP T +FV N T + +++ FE
Sbjct: 59 ELRPGRALVVEMSR---------------PRPLNTWKIFVGNVSAACTSQ-ELRSLFERR 102
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G V+ + +++AFV E + +A A+ + ++ + I+VE + K
Sbjct: 103 GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL LF + GR+ D+ +AFV+ E + DA AI
Sbjct: 70 MSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 129
Query: 54 RGLDNIPFGYDRRRLSVEWA-RGER 77
L+ +R++VE + +G++
Sbjct: 130 AQLNGKEV--KGKRINVELSTKGQK 152
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 5 IFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN + +T EL LF+ YG + + FAFV+ ++ A AI L G+
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALH----GH 58
Query: 64 DR---RRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
+ R L VE +R RP T +FV N T + +++ FE
Sbjct: 59 ELRPGRALVVEMSR---------------PRPLNTWKIFVGNVSAACTSQ-ELRSLFERR 102
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G V+ + +++AFV E + +A A+ + ++ + I+VE + K
Sbjct: 103 GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL LF + GR+ D+ +AFV+ E + DA AI
Sbjct: 70 MSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 129
Query: 54 RGLDNIPFGYDRRRLSVEWA-RGER 77
L+ +R++VE + +G++
Sbjct: 130 AQLNGKEV--KGKRINVELSTKGQK 152
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 5 IFVGNFE-YETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGY 63
IFVGN + +T EL LF+ YG + + FAFV+ ++ A AI L G+
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALH----GH 58
Query: 64 DR---RRLSVEWARGERGRHRDGSKSMANQRPTKT--LFVINFDPIRTRERDIKRHFEPY 118
+ R L VE +R RP T +FV N T + +++ FE
Sbjct: 59 ELRPGRALVVEMSR---------------PRPLNTWKIFVGNVSAACTSQ-ELRSLFERR 102
Query: 119 GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165
G V+ + +++AFV E + +A A+ + ++ + I+VE + K
Sbjct: 103 GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 149
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 1 MSRP-------IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53
MSRP IFVGN EL LF + GR+ D+ +AFV+ E + DA AI
Sbjct: 70 MSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAI 129
Query: 54 RGLDNIPFGYDRRRLSVEWA-RGER 77
L+ +R++VE + +G++
Sbjct: 130 AQLNGKEV--KGKRINVELSTKGQK 152
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGL 56
+FVG R +LE LFS+ G +++ + + GF +V F D A++ +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 57 DNIPFGYDRRRLSVEWARGE-RGRHRDGSKSMANQRPTKTL-------------FVINFD 102
++ ++ V A+ + R + ++ K+ + P K +I
Sbjct: 66 TT----FEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNL 121
Query: 103 PIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155
+ E D+K F YG VL V I R FAFVQF+ EA KAL+ + ++
Sbjct: 122 SFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Query: 156 RVISVEYALKDDSERDDRYDS 176
R ++V++A+ D +D ++ S
Sbjct: 182 RTVAVDWAVAKDKYKDAQHAS 202
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 75
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 76 -YDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 134
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 135 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 179
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)
Query: 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS---GFAFVYFEDDRDAADAIRGLDN 58
SR +FV N +EL LF +YG I + + GF + + D R A A+RGL N
Sbjct: 196 SRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQN 255
Query: 59 IPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118
P RR+L + ++ + + S NQ TL + N DP + E ++++ F Y
Sbjct: 256 KPL--RRRKLDIHFSIPK----ENPSDKDLNQ---GTLVIFNLDPSVSNE-EVRQIFGTY 305
Query: 119 GNVLHVR---IRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA------------ 163
G V +R +++ F++F A AL S ++S++ + I +E +
Sbjct: 306 GEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRRNLMQQ 365
Query: 164 LKDDSERDD--RYDSPRRGGYGRHSPYGRSPSPAYRRRPSP 202
L D ++D+ Y P G SP SP A+ + SP
Sbjct: 366 LGHDIDQDEPRSYRIPHVG-----SPIASSPPGAWAQYSSP 401
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKS-----GFAFVYFEDDRDAADAIRGLDNI 59
I+VGN + R ++E +F KYG I +D+K+ FAFV FED RDA DA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG- 76
Query: 60 PFGYDRRRLSVEWARGERGRHRDGSKSMAN----------QRPTKTLFVINFDPIRTRER 109
+ YD RL VE+ R RG R G R ++ +++ P +
Sbjct: 77 -YDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQ 135
Query: 110 DIKRHFEPYGNVLHVRIRRN-FAFVQFETQEEATKALESTDRSKL 153
D+K H G+V + + R+ V+F +E+ T A+ D +K
Sbjct: 136 DLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,069,018
Number of Sequences: 539616
Number of extensions: 5104587
Number of successful extensions: 16358
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 849
Number of HSP's that attempted gapping in prelim test: 13055
Number of HSP's gapped (non-prelim): 2789
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)