Query 024366
Match_columns 268
No_of_seqs 285 out of 2918
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.7E-33 1.2E-37 236.1 23.2 154 2-169 107-278 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.1E-30 2.3E-35 233.3 19.6 163 2-167 107-285 (612)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 6.8E-29 1.5E-33 221.5 22.9 161 2-169 138-310 (578)
4 KOG0109 RNA-binding protein LA 100.0 6E-30 1.3E-34 202.5 12.4 157 1-173 1-157 (346)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.9E-29 8.5E-34 223.5 19.2 160 2-165 89-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.9E-29 1.1E-33 215.8 19.0 152 2-167 3-172 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-28 3.3E-33 212.7 21.6 164 3-167 90-350 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-28 2.8E-33 220.3 20.8 166 1-167 1-175 (481)
9 KOG0148 Apoptosis-promoting RN 100.0 1.6E-28 3.5E-33 192.7 16.2 163 4-169 64-241 (321)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.1E-28 1.1E-32 216.5 20.3 162 2-166 275-480 (481)
11 KOG0117 Heterogeneous nuclear 100.0 4.9E-28 1.1E-32 201.9 16.2 165 3-169 84-334 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.9E-27 6.3E-32 214.2 19.4 161 2-166 175-375 (509)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-27 3.7E-32 217.8 17.6 151 4-166 2-167 (562)
14 KOG0144 RNA-binding protein CU 100.0 7.1E-28 1.5E-32 200.0 12.0 155 4-169 36-209 (510)
15 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.9E-27 1.5E-31 211.7 19.3 160 3-165 296-501 (509)
16 TIGR01628 PABP-1234 polyadenyl 99.9 2.1E-26 4.5E-31 210.7 17.9 163 3-166 179-364 (562)
17 KOG0131 Splicing factor 3b, su 99.9 3.2E-26 7E-31 169.9 12.5 155 3-170 10-181 (203)
18 KOG0127 Nucleolar protein fibr 99.9 7.2E-26 1.6E-30 193.1 15.3 162 3-167 6-197 (678)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-25 2.3E-30 201.1 16.8 147 2-167 58-223 (578)
20 TIGR01622 SF-CC1 splicing fact 99.9 6.5E-25 1.4E-29 196.3 20.7 163 2-166 186-448 (457)
21 KOG0145 RNA-binding protein EL 99.9 2E-24 4.4E-29 168.9 16.5 162 4-166 129-358 (360)
22 KOG0145 RNA-binding protein EL 99.9 6.3E-25 1.4E-29 171.7 12.9 151 3-167 42-210 (360)
23 KOG0106 Alternative splicing f 99.9 2.5E-24 5.4E-29 167.7 12.5 155 3-160 2-165 (216)
24 KOG0110 RNA-binding protein (R 99.9 1.4E-23 3E-28 184.4 12.9 159 4-167 517-694 (725)
25 KOG0105 Alternative splicing f 99.9 4.9E-22 1.1E-26 148.0 18.8 159 2-163 6-187 (241)
26 KOG0124 Polypyrimidine tract-b 99.9 3.1E-24 6.7E-29 175.2 7.3 163 2-167 113-291 (544)
27 KOG0127 Nucleolar protein fibr 99.9 9E-23 1.9E-27 174.3 16.4 161 4-167 119-379 (678)
28 KOG0107 Alternative splicing f 99.9 2.5E-21 5.5E-26 143.1 16.0 78 92-170 9-89 (195)
29 KOG0144 RNA-binding protein CU 99.9 8.5E-22 1.9E-26 164.1 11.6 165 2-167 124-505 (510)
30 KOG0123 Polyadenylate-binding 99.9 3.1E-21 6.8E-26 165.2 15.4 143 3-168 2-155 (369)
31 KOG4206 Spliceosomal protein s 99.9 8E-21 1.7E-25 146.7 15.5 160 2-164 9-220 (221)
32 KOG0146 RNA-binding protein ET 99.9 3.8E-21 8.2E-26 151.2 11.6 165 3-168 20-367 (371)
33 KOG4207 Predicted splicing fac 99.8 2.7E-20 5.8E-25 141.1 13.8 79 89-168 9-95 (256)
34 KOG0107 Alternative splicing f 99.8 2.5E-19 5.5E-24 132.5 16.2 75 1-77 9-86 (195)
35 KOG0147 Transcriptional coacti 99.8 4.9E-21 1.1E-25 164.3 7.6 161 3-167 180-359 (549)
36 KOG0123 Polyadenylate-binding 99.8 4.6E-20 1E-24 158.0 13.7 154 5-165 79-245 (369)
37 KOG0147 Transcriptional coacti 99.8 2.9E-20 6.3E-25 159.6 12.0 160 5-166 281-528 (549)
38 TIGR01645 half-pint poly-U bin 99.8 5.9E-19 1.3E-23 158.3 19.2 70 3-74 205-282 (612)
39 KOG4205 RNA-binding protein mu 99.8 7.1E-20 1.5E-24 151.8 11.2 159 2-170 6-180 (311)
40 KOG0148 Apoptosis-promoting RN 99.8 6.9E-20 1.5E-24 144.3 10.3 130 2-167 6-143 (321)
41 KOG1457 RNA binding protein (c 99.8 3.5E-18 7.6E-23 131.2 12.0 151 3-154 35-274 (284)
42 KOG1548 Transcription elongati 99.8 2.2E-17 4.9E-22 134.4 15.8 161 1-163 133-349 (382)
43 PLN03134 glycine-rich RNA-bind 99.8 4.7E-18 1E-22 127.4 10.5 75 1-77 33-115 (144)
44 PLN03134 glycine-rich RNA-bind 99.8 3.6E-17 7.8E-22 122.7 13.7 78 90-168 31-116 (144)
45 KOG4211 Splicing factor hnRNP- 99.7 6E-17 1.3E-21 137.7 15.0 155 4-164 12-180 (510)
46 KOG0110 RNA-binding protein (R 99.7 3.5E-17 7.7E-22 144.4 12.7 159 3-164 386-596 (725)
47 KOG1190 Polypyrimidine tract-b 99.7 2.4E-16 5.2E-21 131.0 15.4 161 2-165 297-490 (492)
48 KOG0113 U1 small nuclear ribon 99.7 4.3E-16 9.4E-21 124.6 15.9 82 89-171 97-186 (335)
49 KOG4676 Splicing factor, argin 99.7 9.9E-18 2.1E-22 138.4 5.7 154 3-161 8-221 (479)
50 KOG4207 Predicted splicing fac 99.7 5.6E-16 1.2E-20 117.8 14.1 71 2-74 13-91 (256)
51 KOG0120 Splicing factor U2AF, 99.7 7.8E-17 1.7E-21 140.1 10.2 162 3-166 290-492 (500)
52 KOG4212 RNA-binding protein hn 99.7 1.8E-15 4E-20 126.8 15.7 158 3-163 45-291 (608)
53 KOG0121 Nuclear cap-binding pr 99.7 2.8E-16 6.1E-21 110.5 6.8 72 2-75 36-115 (153)
54 PF00076 RRM_1: RNA recognitio 99.6 5.1E-16 1.1E-20 102.2 7.2 63 5-69 1-70 (70)
55 PLN03120 nucleic acid binding 99.6 1.9E-15 4.1E-20 121.3 10.4 73 1-76 3-80 (260)
56 KOG1456 Heterogeneous nuclear 99.6 1.6E-13 3.4E-18 113.2 20.4 162 2-167 31-200 (494)
57 KOG0105 Alternative splicing f 99.6 5.6E-15 1.2E-19 110.5 9.4 77 92-169 5-86 (241)
58 KOG0113 U1 small nuclear ribon 99.6 4.1E-14 8.9E-19 113.4 14.8 70 3-74 102-179 (335)
59 COG0724 RNA-binding proteins ( 99.6 2E-14 4.4E-19 119.8 12.9 121 3-126 116-257 (306)
60 KOG1190 Polypyrimidine tract-b 99.6 4.5E-14 9.7E-19 117.6 14.2 165 4-168 152-375 (492)
61 TIGR01659 sex-lethal sex-letha 99.6 1.2E-14 2.5E-19 124.2 10.3 75 2-76 193-275 (346)
62 KOG0130 RNA-binding protein RB 99.5 1.2E-14 2.7E-19 103.1 6.3 71 4-76 74-152 (170)
63 KOG0114 Predicted RNA-binding 99.5 3.9E-14 8.4E-19 96.0 8.4 73 1-75 17-94 (124)
64 KOG0124 Polypyrimidine tract-b 99.5 1.2E-13 2.7E-18 113.6 12.9 68 4-73 212-287 (544)
65 PF14259 RRM_6: RNA recognitio 99.5 2.4E-14 5.3E-19 94.3 6.7 63 5-69 1-70 (70)
66 KOG0130 RNA-binding protein RB 99.5 5.4E-14 1.2E-18 99.9 8.4 80 89-169 68-155 (170)
67 PLN03121 nucleic acid binding 99.5 1.1E-13 2.3E-18 109.5 10.1 71 3-76 6-81 (243)
68 KOG1456 Heterogeneous nuclear 99.5 2E-12 4.3E-17 106.8 17.8 167 2-168 120-365 (494)
69 PF00076 RRM_1: RNA recognitio 99.5 8.4E-14 1.8E-18 91.5 7.4 63 96-159 1-70 (70)
70 KOG0129 Predicted RNA-binding 99.5 5.4E-13 1.2E-17 114.6 14.1 156 2-164 259-452 (520)
71 KOG0125 Ataxin 2-binding prote 99.5 5.5E-14 1.2E-18 114.0 6.6 72 3-76 97-174 (376)
72 smart00362 RRM_2 RNA recogniti 99.5 2.5E-13 5.4E-18 89.2 8.4 65 4-70 1-71 (72)
73 KOG0149 Predicted RNA-binding 99.5 8.7E-14 1.9E-18 108.2 6.4 70 3-75 13-90 (247)
74 KOG0122 Translation initiation 99.5 2.3E-13 5E-18 106.3 8.4 72 3-76 190-269 (270)
75 KOG0132 RNA polymerase II C-te 99.5 2.3E-13 5.1E-18 121.5 9.4 75 2-78 421-497 (894)
76 KOG0121 Nuclear cap-binding pr 99.5 2.2E-13 4.8E-18 96.0 7.2 75 90-165 33-115 (153)
77 PLN03213 repressor of silencin 99.5 2.5E-13 5.5E-18 115.8 8.7 71 3-75 11-87 (759)
78 KOG0125 Ataxin 2-binding prote 99.4 3E-13 6.4E-18 109.9 8.2 75 91-166 94-174 (376)
79 KOG0111 Cyclophilin-type pepti 99.4 1.5E-13 3.3E-18 105.7 5.8 74 3-78 11-92 (298)
80 KOG0117 Heterogeneous nuclear 99.4 2.6E-13 5.6E-18 114.4 7.6 76 3-80 260-335 (506)
81 PLN03120 nucleic acid binding 99.4 1E-12 2.2E-17 105.7 10.0 72 93-166 4-80 (260)
82 KOG0112 Large RNA-binding prot 99.4 9E-14 2E-18 125.9 4.1 151 2-168 372-533 (975)
83 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.5E-17 85.7 8.9 67 4-72 1-74 (74)
84 KOG0114 Predicted RNA-binding 99.4 2.7E-12 5.7E-17 87.2 9.6 75 91-166 16-95 (124)
85 KOG4212 RNA-binding protein hn 99.4 1.1E-11 2.3E-16 104.5 15.3 70 93-163 536-608 (608)
86 KOG0122 Translation initiation 99.4 1.5E-12 3.2E-17 101.8 8.5 74 92-166 188-269 (270)
87 smart00360 RRM RNA recognition 99.4 2.1E-12 4.7E-17 84.3 7.5 62 7-70 1-70 (71)
88 KOG0126 Predicted RNA-binding 99.4 5.9E-14 1.3E-18 104.8 -0.4 73 3-77 36-116 (219)
89 PF13893 RRM_5: RNA recognitio 99.4 3.2E-12 7E-17 80.1 7.4 53 19-73 1-56 (56)
90 PF14259 RRM_6: RNA recognitio 99.4 3.2E-12 7E-17 84.0 7.5 63 96-159 1-70 (70)
91 PF13893 RRM_5: RNA recognitio 99.3 7.4E-12 1.6E-16 78.5 7.5 53 111-163 1-56 (56)
92 KOG0111 Cyclophilin-type pepti 99.3 1.9E-12 4E-17 99.7 5.4 78 91-169 8-93 (298)
93 KOG0109 RNA-binding protein LA 99.3 3.3E-12 7.1E-17 102.3 5.7 74 1-76 77-150 (346)
94 PLN03121 nucleic acid binding 99.3 1.8E-11 3.8E-16 97.0 9.6 72 92-165 4-80 (243)
95 PLN03213 repressor of silencin 99.3 1.2E-11 2.5E-16 105.8 9.1 74 91-165 8-87 (759)
96 smart00362 RRM_2 RNA recogniti 99.3 1.6E-11 3.5E-16 80.4 7.8 65 95-160 1-71 (72)
97 KOG0120 Splicing factor U2AF, 99.3 9.8E-12 2.1E-16 108.6 7.9 161 3-167 176-370 (500)
98 KOG0108 mRNA cleavage and poly 99.2 3.1E-11 6.8E-16 104.9 8.1 73 3-77 19-99 (435)
99 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.4E-15 76.8 8.3 67 95-162 1-74 (74)
100 KOG4454 RNA binding protein (R 99.2 4.5E-12 9.8E-17 97.5 1.7 137 1-160 8-157 (267)
101 KOG0153 Predicted RNA-binding 99.2 5.7E-11 1.2E-15 97.5 7.9 73 2-75 228-302 (377)
102 KOG0415 Predicted peptidyl pro 99.2 9.6E-11 2.1E-15 96.4 8.2 78 88-166 234-319 (479)
103 smart00360 RRM RNA recognition 99.2 1E-10 2.2E-15 76.2 6.8 63 98-161 1-71 (71)
104 KOG0149 Predicted RNA-binding 99.2 5E-11 1.1E-15 93.0 6.0 71 93-165 12-90 (247)
105 KOG4211 Splicing factor hnRNP- 99.2 2E-09 4.3E-14 92.4 15.6 155 4-163 105-355 (510)
106 KOG2193 IGF-II mRNA-binding pr 99.1 7.3E-12 1.6E-16 105.0 0.7 150 3-167 2-158 (584)
107 KOG0126 Predicted RNA-binding 99.1 9.6E-12 2.1E-16 93.1 0.7 76 91-167 33-116 (219)
108 KOG4660 Protein Mei2, essentia 99.1 6.2E-11 1.3E-15 102.9 4.6 158 2-165 75-249 (549)
109 COG0724 RNA-binding proteins ( 99.1 4.7E-10 1E-14 93.4 9.7 72 93-165 115-194 (306)
110 KOG1365 RNA-binding protein Fu 99.1 1.4E-10 3E-15 96.3 6.3 156 5-164 164-360 (508)
111 KOG4206 Spliceosomal protein s 99.1 3.5E-10 7.6E-15 88.0 7.5 76 91-167 7-91 (221)
112 KOG0131 Splicing factor 3b, su 99.1 2.5E-10 5.3E-15 85.7 6.1 73 91-164 7-87 (203)
113 KOG4210 Nuclear localization s 99.1 3.6E-10 7.8E-15 93.9 6.9 161 3-168 89-266 (285)
114 smart00361 RRM_1 RNA recogniti 99.0 7.8E-10 1.7E-14 72.5 6.6 53 16-70 2-69 (70)
115 smart00361 RRM_1 RNA recogniti 99.0 9E-10 1.9E-14 72.2 6.1 53 108-160 2-69 (70)
116 KOG0108 mRNA cleavage and poly 99.0 1.5E-09 3.3E-14 94.5 7.7 74 94-168 19-100 (435)
117 KOG0128 RNA-binding protein SA 99.0 8.4E-11 1.8E-15 106.6 -0.2 132 3-165 668-814 (881)
118 KOG0132 RNA polymerase II C-te 99.0 1.6E-09 3.6E-14 97.4 7.8 76 92-168 420-497 (894)
119 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.1E-09 4.6E-14 93.6 7.9 75 1-77 404-486 (940)
120 KOG0151 Predicted splicing reg 98.9 1.4E-09 3E-14 96.9 6.6 72 1-74 173-255 (877)
121 KOG0106 Alternative splicing f 98.9 1.1E-09 2.3E-14 86.1 5.0 75 94-169 2-76 (216)
122 KOG4208 Nucleolar RNA-binding 98.9 4.6E-09 1E-13 80.6 7.5 71 4-76 51-130 (214)
123 KOG0415 Predicted peptidyl pro 98.9 1.6E-09 3.4E-14 89.3 5.0 72 3-76 240-319 (479)
124 KOG0153 Predicted RNA-binding 98.9 8.5E-09 1.8E-13 84.9 7.5 74 91-165 226-302 (377)
125 KOG0146 RNA-binding protein ET 98.8 3.9E-09 8.5E-14 83.9 4.2 70 3-74 286-363 (371)
126 KOG4205 RNA-binding protein mu 98.8 8.7E-09 1.9E-13 86.1 6.1 75 2-79 97-179 (311)
127 KOG0533 RRM motif-containing p 98.8 2.2E-08 4.8E-13 80.4 8.0 71 3-75 84-161 (243)
128 KOG0116 RasGAP SH3 binding pro 98.8 1.4E-08 3E-13 88.0 6.4 68 3-73 289-364 (419)
129 KOG0116 RasGAP SH3 binding pro 98.8 8.4E-08 1.8E-12 83.2 10.8 73 93-167 288-368 (419)
130 PF04059 RRM_2: RNA recognitio 98.7 7.5E-08 1.6E-12 66.4 8.0 72 3-74 2-85 (97)
131 PF11608 Limkain-b1: Limkain b 98.7 5.3E-08 1.1E-12 64.0 6.8 70 3-76 3-77 (90)
132 KOG1457 RNA binding protein (c 98.7 8E-08 1.7E-12 74.7 8.9 78 92-170 33-122 (284)
133 KOG4208 Nucleolar RNA-binding 98.7 1.1E-07 2.4E-12 73.1 7.7 77 89-166 45-130 (214)
134 KOG4661 Hsp27-ERE-TATA-binding 98.6 5.7E-08 1.2E-12 84.9 6.6 76 92-168 404-487 (940)
135 PF08777 RRM_3: RNA binding mo 98.6 1.8E-07 3.9E-12 66.0 6.6 70 3-72 2-76 (105)
136 KOG0533 RRM motif-containing p 98.6 2.4E-07 5.3E-12 74.5 7.9 77 92-169 82-165 (243)
137 KOG4209 Splicing factor RNPS1, 98.5 1.3E-07 2.8E-12 76.2 4.8 69 3-74 102-178 (231)
138 KOG4660 Protein Mei2, essentia 98.5 9.2E-08 2E-12 83.6 4.1 70 89-159 71-143 (549)
139 KOG0226 RNA-binding proteins [ 98.5 1.3E-07 2.8E-12 74.9 4.4 150 6-163 100-267 (290)
140 KOG1365 RNA-binding protein Fu 98.5 2.6E-06 5.6E-11 71.4 11.9 141 3-147 61-225 (508)
141 PF11608 Limkain-b1: Limkain b 98.5 1.1E-06 2.3E-11 57.9 7.6 71 94-167 3-78 (90)
142 KOG0151 Predicted splicing reg 98.5 3E-07 6.5E-12 82.4 6.0 76 90-166 171-257 (877)
143 KOG4454 RNA binding protein (R 98.4 1.1E-07 2.5E-12 73.6 1.9 75 89-164 5-85 (267)
144 KOG4209 Splicing factor RNPS1, 98.4 3.1E-06 6.8E-11 68.2 9.9 76 89-166 97-180 (231)
145 PF08777 RRM_3: RNA binding mo 98.4 1.8E-06 3.9E-11 60.9 7.1 69 94-163 2-77 (105)
146 KOG4307 RNA binding protein RB 98.4 1E-06 2.3E-11 78.9 6.8 154 5-163 314-511 (944)
147 PF14605 Nup35_RRM_2: Nup53/35 98.3 1.4E-06 3E-11 53.4 5.0 51 2-53 1-53 (53)
148 PF04059 RRM_2: RNA recognitio 98.2 9.1E-06 2E-10 56.1 8.2 72 94-166 2-87 (97)
149 KOG1548 Transcription elongati 98.2 8.5E-06 1.8E-10 67.5 8.2 76 91-167 132-222 (382)
150 KOG4676 Splicing factor, argin 98.1 9.8E-07 2.1E-11 74.0 1.0 60 2-62 151-214 (479)
151 KOG2202 U2 snRNP splicing fact 98.0 1.5E-06 3.3E-11 69.2 0.9 55 18-74 84-146 (260)
152 KOG2416 Acinus (induces apopto 98.0 5.3E-06 1.1E-10 73.3 4.0 74 1-74 443-520 (718)
153 KOG1995 Conserved Zn-finger pr 98.0 6.7E-06 1.4E-10 68.6 3.9 72 3-76 67-154 (351)
154 KOG0226 RNA-binding proteins [ 97.9 1.1E-05 2.5E-10 64.1 4.1 69 4-74 192-268 (290)
155 KOG1855 Predicted RNA-binding 97.9 7.8E-06 1.7E-10 69.5 3.1 59 2-60 231-310 (484)
156 KOG2416 Acinus (induces apopto 97.9 3.7E-05 8E-10 68.1 6.9 77 89-166 440-522 (718)
157 COG5175 MOT2 Transcriptional r 97.8 4.2E-05 9.1E-10 63.3 6.2 69 4-74 116-201 (480)
158 PF08675 RNA_bind: RNA binding 97.8 9.6E-05 2.1E-09 48.8 6.6 53 5-58 12-64 (87)
159 KOG1855 Predicted RNA-binding 97.8 6.6E-05 1.4E-09 64.1 7.1 65 89-154 227-312 (484)
160 KOG1995 Conserved Zn-finger pr 97.8 6.4E-05 1.4E-09 62.8 6.6 77 90-167 63-155 (351)
161 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.8E-05 1.9E-09 45.4 5.5 50 94-145 2-53 (53)
162 KOG0129 Predicted RNA-binding 97.8 7.9E-05 1.7E-09 65.1 7.1 54 2-55 370-432 (520)
163 KOG0128 RNA-binding protein SA 97.8 1.1E-06 2.3E-11 80.5 -4.4 146 4-154 573-735 (881)
164 KOG0112 Large RNA-binding prot 97.7 6.3E-05 1.4E-09 69.7 6.3 77 2-78 455-533 (975)
165 COG5175 MOT2 Transcriptional r 97.7 0.00014 3E-09 60.3 6.7 74 91-164 112-201 (480)
166 KOG4307 RNA binding protein RB 97.7 0.00015 3.2E-09 65.5 7.2 68 2-71 867-942 (944)
167 KOG3152 TBP-binding protein, a 97.6 3.5E-05 7.5E-10 61.5 2.7 59 4-62 76-154 (278)
168 PF08952 DUF1866: Domain of un 97.6 0.00035 7.7E-09 51.6 7.8 77 89-166 23-107 (146)
169 KOG1996 mRNA splicing factor [ 97.4 0.00029 6.2E-09 57.4 5.6 58 108-165 300-366 (378)
170 KOG4210 Nuclear localization s 97.4 9.3E-05 2E-09 61.8 2.7 70 4-76 186-264 (285)
171 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00076 1.7E-08 46.9 6.7 69 3-74 7-90 (100)
172 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00075 1.6E-08 47.0 6.2 68 93-163 6-89 (100)
173 KOG2202 U2 snRNP splicing fact 97.4 8.5E-05 1.8E-09 59.4 1.6 57 109-165 83-147 (260)
174 KOG2314 Translation initiation 97.3 0.00083 1.8E-08 59.5 7.6 71 91-162 56-140 (698)
175 PF10309 DUF2414: Protein of u 97.3 0.0016 3.5E-08 40.8 6.7 53 3-56 6-62 (62)
176 PF08952 DUF1866: Domain of un 97.3 0.0012 2.6E-08 48.8 6.9 55 18-75 52-106 (146)
177 KOG0115 RNA-binding protein p5 97.2 0.0014 2.9E-08 52.6 7.2 95 48-163 6-111 (275)
178 KOG4849 mRNA cleavage factor I 97.2 0.00035 7.5E-09 58.3 3.5 67 4-72 82-158 (498)
179 PF10309 DUF2414: Protein of u 97.1 0.0033 7.2E-08 39.4 6.6 54 93-148 5-62 (62)
180 KOG2314 Translation initiation 97.1 0.0018 3.9E-08 57.4 7.3 71 3-74 59-142 (698)
181 KOG3152 TBP-binding protein, a 97.1 0.00038 8.3E-09 55.7 2.9 65 92-157 73-157 (278)
182 PF15023 DUF4523: Protein of u 97.0 0.0031 6.7E-08 46.1 6.3 69 3-74 87-160 (166)
183 PF08675 RNA_bind: RNA binding 96.9 0.0082 1.8E-07 39.8 7.1 54 94-149 10-63 (87)
184 KOG2591 c-Mpl binding protein, 96.9 0.0015 3.3E-08 57.8 4.6 67 3-69 176-245 (684)
185 KOG1996 mRNA splicing factor [ 96.9 0.003 6.5E-08 51.6 6.0 57 16-74 300-365 (378)
186 PF10567 Nab6_mRNP_bdg: RNA-re 96.7 0.082 1.8E-06 43.6 13.0 150 1-151 14-214 (309)
187 PF15023 DUF4523: Protein of u 96.5 0.028 6E-07 41.3 8.1 74 88-163 81-159 (166)
188 KOG0115 RNA-binding protein p5 96.4 0.0027 5.9E-08 50.9 3.1 72 1-72 30-110 (275)
189 KOG2135 Proteins containing th 96.3 0.0032 7E-08 54.8 3.2 60 105-165 384-445 (526)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0028 6.1E-08 49.2 2.5 73 3-75 8-97 (176)
191 KOG4849 mRNA cleavage factor I 96.2 0.0039 8.5E-08 52.2 2.9 69 93-162 80-158 (498)
192 PF07576 BRAP2: BRCA1-associat 96.2 0.03 6.5E-07 39.8 6.9 59 4-62 15-80 (110)
193 KOG4574 RNA-binding protein (c 96.1 0.0037 8.1E-08 58.0 2.7 73 4-76 300-374 (1007)
194 KOG2591 c-Mpl binding protein, 96.1 0.018 3.9E-07 51.3 6.6 66 93-159 175-245 (684)
195 PF07576 BRAP2: BRCA1-associat 95.9 0.22 4.7E-06 35.4 10.4 72 93-164 12-93 (110)
196 KOG2193 IGF-II mRNA-binding pr 95.9 0.0097 2.1E-07 51.2 4.1 73 94-167 2-77 (584)
197 KOG2135 Proteins containing th 95.9 0.0054 1.2E-07 53.4 2.5 70 4-76 374-446 (526)
198 PF04847 Calcipressin: Calcipr 95.6 0.046 1E-06 42.6 6.4 60 15-76 8-71 (184)
199 PRK11634 ATP-dependent RNA hel 95.6 0.29 6.3E-06 46.0 12.7 61 104-165 497-562 (629)
200 PF11767 SET_assoc: Histone ly 95.5 0.078 1.7E-06 33.8 6.2 49 13-62 11-59 (66)
201 PF03880 DbpA: DbpA RNA bindin 95.5 0.089 1.9E-06 34.5 6.7 66 4-73 2-74 (74)
202 PF07292 NID: Nmi/IFP 35 domai 95.5 0.026 5.6E-07 38.2 4.1 74 39-116 1-74 (88)
203 PF03880 DbpA: DbpA RNA bindin 95.4 0.097 2.1E-06 34.3 6.7 59 104-163 11-74 (74)
204 PF11767 SET_assoc: Histone ly 95.2 0.12 2.7E-06 32.9 6.3 57 103-160 9-65 (66)
205 KOG4285 Mitotic phosphoprotein 95.2 0.059 1.3E-06 44.5 5.9 63 93-158 197-261 (350)
206 PF04847 Calcipressin: Calcipr 95.1 0.052 1.1E-06 42.4 5.3 60 107-166 8-71 (184)
207 KOG0804 Cytoplasmic Zn-finger 95.0 0.053 1.2E-06 47.2 5.5 61 2-62 74-141 (493)
208 KOG2068 MOT2 transcription fac 94.5 0.013 2.9E-07 49.0 0.7 69 4-74 79-161 (327)
209 KOG2253 U1 snRNP complex, subu 94.4 0.024 5.3E-07 51.5 2.2 68 2-72 40-107 (668)
210 PF14111 DUF4283: Domain of un 94.1 0.049 1.1E-06 41.1 3.0 114 5-126 18-137 (153)
211 KOG4285 Mitotic phosphoprotein 93.9 0.29 6.2E-06 40.6 7.1 69 5-76 200-270 (350)
212 PF03467 Smg4_UPF3: Smg-4/UPF3 93.4 0.23 4.9E-06 38.6 5.6 75 92-167 6-99 (176)
213 KOG2068 MOT2 transcription fac 93.3 0.031 6.8E-07 46.8 0.7 73 93-165 77-162 (327)
214 PF06495 Transformer: Fruit fl 93.0 0.11 2.3E-06 39.4 3.1 6 259-264 102-107 (182)
215 KOG2253 U1 snRNP complex, subu 93.0 0.092 2E-06 47.9 3.2 73 88-162 35-107 (668)
216 KOG4574 RNA-binding protein (c 92.9 0.069 1.5E-06 50.1 2.3 64 104-167 308-375 (1007)
217 KOG0835 Cyclin L [General func 92.1 0.2 4.4E-06 42.0 3.9 9 106-114 213-221 (367)
218 KOG0804 Cytoplasmic Zn-finger 91.8 0.6 1.3E-05 40.9 6.5 62 93-155 74-142 (493)
219 KOG4019 Calcineurin-mediated s 91.5 0.26 5.6E-06 37.8 3.6 72 2-75 10-89 (193)
220 KOG2891 Surface glycoprotein [ 91.1 0.17 3.7E-06 41.4 2.4 111 13-126 48-193 (445)
221 KOG2318 Uncharacterized conser 90.5 1.5 3.3E-05 39.7 7.9 75 2-76 174-308 (650)
222 KOG0835 Cyclin L [General func 90.0 2.1 4.6E-05 36.2 7.9 8 37-44 174-181 (367)
223 KOG2891 Surface glycoprotein [ 85.2 0.44 9.5E-06 39.1 1.2 32 3-34 150-193 (445)
224 KOG3580 Tight junction protein 84.4 17 0.00037 33.6 10.8 35 92-126 60-94 (1027)
225 KOG4410 5-formyltetrahydrofola 82.8 1.8 3.8E-05 35.8 3.7 48 3-50 331-381 (396)
226 PF03468 XS: XS domain; Inter 81.2 1.6 3.4E-05 31.4 2.6 44 4-47 10-67 (116)
227 KOG4008 rRNA processing protei 80.0 1.1 2.4E-05 35.9 1.7 40 3-42 41-80 (261)
228 KOG4410 5-formyltetrahydrofola 79.8 7.8 0.00017 32.1 6.4 46 92-138 329-377 (396)
229 KOG2318 Uncharacterized conser 79.0 11 0.00024 34.5 7.6 75 90-164 171-306 (650)
230 KOG2295 C2H2 Zn-finger protein 76.5 0.48 1E-05 42.6 -1.4 61 1-61 230-298 (648)
231 KOG4019 Calcineurin-mediated s 76.4 3.2 7E-05 32.0 3.2 59 109-167 30-91 (193)
232 PF14893 PNMA: PNMA 76.1 3.3 7.1E-05 35.6 3.5 44 3-46 19-72 (331)
233 KOG4213 RNA-binding protein La 74.6 3.9 8.5E-05 31.5 3.2 41 14-54 118-168 (205)
234 KOG4483 Uncharacterized conser 73.7 7.6 0.00017 33.8 5.0 52 3-54 392-445 (528)
235 PF15513 DUF4651: Domain of un 73.2 7.1 0.00015 24.4 3.5 19 16-34 8-26 (62)
236 KOG1295 Nonsense-mediated deca 72.7 3.2 7E-05 35.8 2.6 60 3-62 8-78 (376)
237 KOG4246 Predicted DNA-binding 72.0 7.7 0.00017 37.1 5.0 20 247-266 342-361 (1194)
238 PRK10629 EnvZ/OmpR regulon mod 70.8 38 0.00083 24.7 7.9 59 106-164 50-109 (127)
239 COG5594 Uncharacterized integr 69.7 0.71 1.5E-05 43.6 -2.0 26 2-27 208-234 (827)
240 COG2608 CopZ Copper chaperone 69.3 20 0.00044 23.0 5.3 45 2-46 3-49 (71)
241 PF15513 DUF4651: Domain of un 67.3 9.5 0.00021 23.9 3.2 19 108-126 8-26 (62)
242 PF07292 NID: Nmi/IFP 35 domai 64.1 3.3 7.2E-05 28.1 0.8 23 2-24 52-74 (88)
243 COG5638 Uncharacterized conser 64.1 41 0.00089 29.6 7.4 37 38-74 260-296 (622)
244 KOG4357 Uncharacterized conser 64.0 22 0.00047 25.6 4.9 42 113-154 98-139 (164)
245 PRK10629 EnvZ/OmpR regulon mod 62.7 58 0.0013 23.8 7.7 57 4-60 37-97 (127)
246 PF00403 HMA: Heavy-metal-asso 61.8 34 0.00074 20.9 6.1 44 4-47 1-46 (62)
247 PF09902 DUF2129: Uncharacteri 59.0 32 0.00068 22.3 4.6 40 21-61 15-54 (71)
248 COG0018 ArgS Arginyl-tRNA synt 58.7 59 0.0013 30.5 8.1 96 14-125 58-161 (577)
249 KOG4483 Uncharacterized conser 58.6 44 0.00096 29.3 6.7 55 92-147 390-446 (528)
250 PF03468 XS: XS domain; Inter 56.8 10 0.00022 27.2 2.4 33 106-138 29-66 (116)
251 PF02714 DUF221: Domain of unk 56.2 22 0.00048 30.3 4.8 32 39-74 1-32 (325)
252 TIGR02542 B_forsyth_147 Bacter 55.0 26 0.00056 25.0 4.0 92 3-117 6-97 (145)
253 PF08544 GHMP_kinases_C: GHMP 53.3 57 0.0012 21.2 5.5 40 17-57 37-80 (85)
254 PRK02886 hypothetical protein; 53.3 41 0.00089 22.7 4.6 39 22-61 20-58 (87)
255 PRK02302 hypothetical protein; 52.4 43 0.00093 22.7 4.6 39 22-61 22-60 (89)
256 KOG4246 Predicted DNA-binding 50.9 16 0.00034 35.1 3.1 10 92-101 144-153 (1194)
257 PF11411 DNA_ligase_IV: DNA li 49.7 14 0.0003 20.4 1.6 17 12-28 19-35 (36)
258 PF15407 Spo7_2_N: Sporulation 49.1 6.3 0.00014 25.2 0.2 23 2-24 27-49 (67)
259 PF02714 DUF221: Domain of unk 48.3 26 0.00055 29.9 3.9 35 131-167 1-35 (325)
260 TIGR03636 L23_arch archaeal ri 47.9 57 0.0012 21.5 4.6 51 4-54 15-72 (77)
261 PF11823 DUF3343: Protein of u 46.2 33 0.00071 22.1 3.3 27 129-155 2-28 (73)
262 PRK11634 ATP-dependent RNA hel 44.5 2.9E+02 0.0062 26.3 12.9 60 12-74 497-561 (629)
263 PF11491 DUF3213: Protein of u 44.2 78 0.0017 21.1 4.7 65 96-162 3-73 (88)
264 PRK14548 50S ribosomal protein 43.7 66 0.0014 21.6 4.5 50 5-54 23-79 (84)
265 PF08002 DUF1697: Protein of u 41.7 1.1E+02 0.0025 22.5 6.0 38 4-42 5-48 (137)
266 COG0150 PurM Phosphoribosylami 41.3 14 0.00031 31.7 1.2 46 14-59 273-322 (345)
267 CHL00123 rps6 ribosomal protei 41.2 67 0.0014 22.1 4.4 46 10-55 14-81 (97)
268 KOG4008 rRNA processing protei 40.6 18 0.00039 29.2 1.6 34 92-126 39-72 (261)
269 KOG3580 Tight junction protein 40.6 3.2E+02 0.007 25.8 9.6 16 93-108 39-54 (1027)
270 PF14026 DUF4242: Protein of u 40.2 1.1E+02 0.0023 20.1 7.3 56 5-61 3-71 (77)
271 PF03439 Spt5-NGN: Early trans 40.1 58 0.0013 21.7 3.9 32 28-59 33-67 (84)
272 PF08734 GYD: GYD domain; Int 39.4 1.2E+02 0.0026 20.5 5.7 42 16-57 22-68 (91)
273 cd00027 BRCT Breast Cancer Sup 39.0 86 0.0019 18.8 5.0 47 3-49 2-48 (72)
274 COG5193 LHP1 La protein, small 37.6 16 0.00034 32.0 0.9 53 2-54 174-244 (438)
275 KOG1295 Nonsense-mediated deca 36.9 41 0.00088 29.3 3.3 60 93-153 7-77 (376)
276 PF13721 SecD-TM1: SecD export 35.9 1.4E+02 0.003 20.8 5.3 45 108-152 48-93 (101)
277 smart00596 PRE_C2HC PRE_C2HC d 35.5 50 0.0011 21.2 2.7 54 109-165 2-64 (69)
278 PLN02286 arginine-tRNA ligase 35.2 3.3E+02 0.0073 25.6 9.2 82 29-126 75-162 (576)
279 PF13046 DUF3906: Protein of u 34.9 62 0.0014 20.4 3.0 27 15-41 31-63 (64)
280 PRK08559 nusG transcription an 34.9 1.4E+02 0.0031 22.4 5.7 31 29-59 36-69 (153)
281 PF14111 DUF4283: Domain of un 34.0 23 0.0005 26.3 1.3 54 109-163 36-89 (153)
282 PF07530 PRE_C2HC: Associated 33.9 63 0.0014 20.7 3.1 55 109-166 2-65 (68)
283 PF10567 Nab6_mRNP_bdg: RNA-re 33.6 73 0.0016 26.8 4.1 72 92-164 14-106 (309)
284 PHA01632 hypothetical protein 32.7 49 0.0011 20.1 2.2 21 5-25 19-39 (64)
285 PF09707 Cas_Cas2CT1978: CRISP 32.0 93 0.002 21.0 3.8 42 3-44 26-72 (86)
286 TIGR03636 L23_arch archaeal ri 31.8 1.2E+02 0.0026 20.0 4.2 51 97-148 17-74 (77)
287 PRK15464 cold shock-like prote 30.6 35 0.00077 22.0 1.5 20 26-45 6-25 (70)
288 PHA00019 IV phage assembly pro 30.2 4.1E+02 0.0088 23.8 9.7 62 11-72 25-96 (428)
289 TIGR02381 cspD cold shock doma 30.2 40 0.00086 21.5 1.7 50 26-76 3-56 (68)
290 COG1105 FruK Fructose-1-phosph 29.8 2.4E+02 0.0053 24.1 6.8 20 7-26 104-123 (310)
291 COG0445 GidA Flavin-dependent 29.7 1.8E+02 0.0038 27.2 6.2 96 36-135 236-342 (621)
292 PF01782 RimM: RimM N-terminal 29.6 75 0.0016 20.9 3.1 32 29-61 47-78 (84)
293 TIGR02515 IV_pilus_PilQ type I 29.6 1.1E+02 0.0023 27.4 4.9 59 16-74 10-75 (418)
294 COG5584 Predicted small secret 29.4 49 0.0011 22.7 2.0 26 9-34 29-54 (103)
295 PRK12451 arginyl-tRNA syntheta 29.4 2.4E+02 0.0052 26.4 7.3 82 29-126 70-158 (562)
296 KOG2295 C2H2 Zn-finger protein 29.3 8.8 0.00019 34.9 -1.9 62 92-154 230-299 (648)
297 COG0090 RplB Ribosomal protein 29.2 54 0.0012 27.1 2.7 65 37-121 90-154 (275)
298 PRK14998 cold shock-like prote 29.1 44 0.00096 21.7 1.8 19 27-45 4-22 (73)
299 PRK09937 stationary phase/star 29.0 44 0.00095 21.8 1.8 18 27-44 4-21 (74)
300 PF06804 Lipoprotein_18: NlpB/ 28.5 2.8E+02 0.0061 23.5 7.1 95 5-116 201-296 (303)
301 PF00313 CSD: 'Cold-shock' DNA 28.4 46 0.00099 20.8 1.8 21 27-47 3-23 (66)
302 PRK11901 hypothetical protein; 28.3 1.2E+02 0.0027 26.0 4.7 53 93-150 245-306 (327)
303 PRK14548 50S ribosomal protein 28.2 1.4E+02 0.003 20.1 4.1 46 103-148 29-81 (84)
304 PF15063 TC1: Thyroid cancer p 28.1 38 0.00083 22.1 1.3 24 6-29 29-52 (79)
305 TIGR00456 argS arginyl-tRNA sy 27.9 3.1E+02 0.0067 25.7 7.8 91 17-125 58-156 (566)
306 PRK09507 cspE cold shock prote 27.9 44 0.00094 21.4 1.6 20 26-45 5-24 (69)
307 KOG4365 Uncharacterized conser 27.6 9.6 0.00021 33.7 -1.9 70 2-74 3-80 (572)
308 COG5638 Uncharacterized conser 27.6 3.7E+02 0.0081 23.9 7.5 34 130-163 260-295 (622)
309 PRK11679 lipoprotein; Provisio 27.6 4.1E+02 0.0089 23.1 8.8 44 5-48 242-286 (346)
310 PRK15463 cold shock-like prote 27.1 45 0.00097 21.4 1.6 20 26-45 6-25 (70)
311 PF10041 DUF2277: Uncharacteri 27.0 52 0.0011 21.5 1.8 26 1-26 1-27 (78)
312 PF14893 PNMA: PNMA 27.0 70 0.0015 27.6 3.1 46 92-138 17-72 (331)
313 PF10281 Ish1: Putative stress 26.6 63 0.0014 17.8 1.9 17 13-29 3-19 (38)
314 PRK10943 cold shock-like prote 26.4 48 0.001 21.2 1.6 20 26-45 5-24 (69)
315 PF12385 Peptidase_C70: Papain 26.1 63 0.0014 24.6 2.4 21 10-30 90-112 (166)
316 cd04458 CSP_CDS Cold-Shock Pro 26.0 54 0.0012 20.3 1.8 19 27-45 3-21 (65)
317 COG0030 KsgA Dimethyladenosine 25.6 1E+02 0.0022 25.6 3.8 26 4-29 97-122 (259)
318 PF08156 NOP5NT: NOP5NT (NUC12 24.7 24 0.00052 22.5 -0.0 39 17-57 27-65 (67)
319 PRK12450 foldase protein PrsA; 24.7 1.6E+02 0.0035 25.1 4.9 43 13-61 132-176 (309)
320 PF13037 DUF3898: Domain of un 24.4 76 0.0017 21.3 2.2 44 14-57 31-90 (91)
321 COG4471 Uncharacterized protei 24.2 1.8E+02 0.0038 19.7 3.9 40 21-61 20-59 (90)
322 PRK05772 translation initiatio 24.0 1.8E+02 0.0039 25.5 5.1 43 13-57 2-57 (363)
323 PF00398 RrnaAD: Ribosomal RNA 23.9 62 0.0014 26.7 2.3 43 3-54 98-142 (262)
324 PF13721 SecD-TM1: SecD export 23.8 2.6E+02 0.0055 19.4 6.8 55 5-59 34-92 (101)
325 PRK09890 cold shock protein Cs 23.7 55 0.0012 21.0 1.5 20 26-45 6-25 (70)
326 PF02829 3H: 3H domain; Inter 23.6 1.9E+02 0.0041 20.0 4.2 48 12-59 7-59 (98)
327 TIGR00755 ksgA dimethyladenosi 23.5 95 0.0021 25.4 3.3 23 5-27 97-119 (253)
328 PTZ00380 microtubule-associate 23.4 1.6E+02 0.0034 21.4 3.9 12 36-47 97-108 (121)
329 cd06257 DnaJ DnaJ domain or J- 23.4 69 0.0015 18.7 1.9 20 7-26 5-24 (55)
330 KOG3671 Actin regulatory prote 23.1 41 0.0009 30.4 1.1 44 106-149 90-136 (569)
331 PTZ00191 60S ribosomal protein 22.9 2.2E+02 0.0047 21.4 4.6 50 4-53 83-139 (145)
332 PRK10354 RNA chaperone/anti-te 22.5 60 0.0013 20.8 1.5 19 26-44 6-24 (70)
333 PRK11901 hypothetical protein; 22.1 1.8E+02 0.0039 25.0 4.5 46 13-59 253-307 (327)
334 PF00837 T4_deiodinase: Iodoth 21.6 2.1E+02 0.0046 23.4 4.7 101 15-118 120-236 (237)
335 PF14268 YoaP: YoaP-like 21.3 33 0.00072 19.9 0.1 36 39-74 3-38 (44)
336 COG1242 Predicted Fe-S oxidore 20.9 1.9E+02 0.0042 24.4 4.4 23 12-34 124-146 (312)
337 COG4483 Uncharacterized protei 20.7 1.4E+02 0.0031 18.9 2.8 28 108-146 4-31 (68)
338 PF11116 DUF2624: Protein of u 20.6 2.3E+02 0.005 19.1 3.9 36 13-62 14-49 (85)
339 PRK11230 glycolate oxidase sub 20.4 1.9E+02 0.0041 26.6 4.8 43 16-58 203-256 (499)
340 KOG0862 Synaptobrevin/VAMP-lik 20.1 67 0.0015 25.7 1.6 31 17-47 89-120 (216)
341 cd01201 Neurobeachin Neurobeac 20.0 3.3E+02 0.0072 19.3 5.7 49 9-57 53-106 (108)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5.7e-33 Score=236.08 Aligned_cols=154 Identities=27% Similarity=0.459 Sum_probs=136.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+++|+++|+++|+.||+|++|+| ++|||||+|.++++|++|++.|++..|. +++|+|.++
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~--gr~i~V~~a 184 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR--NKRLKVSYA 184 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC--Cceeeeecc
Confidence 479999999999999999999999999999988 4589999999999999999999999986 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
..... .....+|||.|| +..+++++|+++|++||.|+.+.| .+++|||+|.+.++|++||
T Consensus 185 ~p~~~-----------~~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 185 RPGGE-----------SIKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ccccc-----------ccccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 64321 123568999999 889999999999999999999888 3479999999999999999
Q ss_pred HhhCCCccCC--cEEEEEEeecCCCC
Q 024366 146 ESTDRSKLVD--RVISVEYALKDDSE 169 (268)
Q Consensus 146 ~~l~g~~~~g--~~i~v~~a~~~~~~ 169 (268)
+.||+..+.+ ..|.|.++......
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHhCCCccCCCceeEEEEECCccccc
Confidence 9999998876 68999998865443
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.1e-30 Score=233.34 Aligned_cols=163 Identities=20% Similarity=0.406 Sum_probs=140.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+++|+++|+++|..||+|..|.| ++|||||+|.+.++|..|++.|||..|. |+.|.|.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~rp 184 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVGRP 184 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeeccc
Confidence 468999999999999999999999999999988 5899999999999999999999999986 999999875
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.....................+|||+|| +..+++++|+++|+.||.|..+.| .+|||||+|.+.++|.+||
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccccccccccccccccccccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 5432211111111122334579999999 889999999999999999999988 4689999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
+.||+..|+|+.|.|.++..+.
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999988654
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=6.8e-29 Score=221.48 Aligned_cols=161 Identities=31% Similarity=0.428 Sum_probs=137.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEe---------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR-IERVDM---------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~-v~~i~i---------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
+++|||+|||+++|+++|.++|.++++ |.++.+ ++|||||+|.++++|..|++.|+...+.++|+.|.|.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 478999999999999999999999864 444433 4799999999999999999988765555569999999
Q ss_pred EeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccC--CCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 72 WARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~--g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
|+..+..... ......++|||.|| +..+++++|+++|+.| |.|..|.+.++||||+|++.++|++|++.||
T Consensus 218 wA~p~~~~d~------~~~~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~ln 290 (578)
T TIGR01648 218 WAEPEEEVDE------DVMAKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELN 290 (578)
T ss_pred eecccccccc------cccccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhC
Confidence 9986543221 12234578999999 8899999999999999 9999999999999999999999999999999
Q ss_pred CCccCCcEEEEEEeecCCCC
Q 024366 150 RSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 150 g~~~~g~~i~v~~a~~~~~~ 169 (268)
+.+|+|+.|.|.|+.+....
T Consensus 291 G~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 291 GKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CCEECCEEEEEEEccCCCcc
Confidence 99999999999999876543
No 4
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.97 E-value=6e-30 Score=202.54 Aligned_cols=157 Identities=27% Similarity=0.511 Sum_probs=144.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 80 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~ 80 (268)
|.-+|||||||.++++.+|+.+|++||+|.+|.|-|+||||..++...|..|+..||+..|. |..|.|+-++++
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLh--g~nInVeaSksK---- 74 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLH--GVNINVEASKSK---- 74 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceec--ceEEEEEecccc----
Confidence 45589999999999999999999999999999999999999999999999999999999996 999999988865
Q ss_pred CCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 81 RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
..++++|+|+|+ ...++.++|+..|++||+|.++.|.++|+||.|+-.++|..|+..|++.+|.|+.++|
T Consensus 75 ---------sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 75 ---------SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ---------CCCccccccCCC-CccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeee
Confidence 335789999999 6788899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCC
Q 024366 161 EYALKDDSERDDR 173 (268)
Q Consensus 161 ~~a~~~~~~~~~~ 173 (268)
+.+.++-...++.
T Consensus 145 q~stsrlrtapgm 157 (346)
T KOG0109|consen 145 QLSTSRLRTAPGM 157 (346)
T ss_pred eeeccccccCCCC
Confidence 9988765444433
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.9e-29 Score=223.52 Aligned_cols=160 Identities=29% Similarity=0.492 Sum_probs=137.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.+||||+|||..+|+++|+++|+.||+|.+|.| ++|||||+|.+.++|.+||. |+|..|. |++|.|.++
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i~v~~~ 165 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPIIVQSS 165 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--CeeeEEeec
Confidence 478999999999999999999999999999998 47999999999999999996 8999887 999999987
Q ss_pred ccCCCcCCCC-CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHH
Q 024366 74 RGERGRHRDG-SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 144 (268)
Q Consensus 74 ~~~~~~~~~~-~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A 144 (268)
.......... .......+...+|||+|| +..+++++|+++|+.||.|..|.| .+|||||+|.+.++|.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6443322111 111112234789999999 889999999999999999999988 257999999999999999
Q ss_pred HHhhCCCccCCcEEEEEEeec
Q 024366 145 LESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 145 ~~~l~g~~~~g~~i~v~~a~~ 165 (268)
++.|||..|.|+.|.|.|+..
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999873
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.9e-29 Score=215.79 Aligned_cols=152 Identities=22% Similarity=0.496 Sum_probs=134.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||.++|+++|+++|..||+|..|+| ++|||||+|.++++|.+|++.|+|..|. |+.|.|.++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~--g~~i~v~~a 80 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ--NKTIKVSYA 80 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC--CeeEEEEee
Confidence 368999999999999999999999999999988 4589999999999999999999999886 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.+... .....+|||.|| |..+++++|+++|..||.|..+.+ .+++|||+|.+.++|+.|+
T Consensus 81 ~~~~~-----------~~~~~~l~v~~l-~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai 148 (352)
T TIGR01661 81 RPSSD-----------SIKGANLYVSGL-PKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAI 148 (352)
T ss_pred ccccc-----------ccccceEEECCc-cccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHH
Confidence 75321 223568999999 889999999999999999988887 3679999999999999999
Q ss_pred HhhCCCccCC--cEEEEEEeecCC
Q 024366 146 ESTDRSKLVD--RVISVEYALKDD 167 (268)
Q Consensus 146 ~~l~g~~~~g--~~i~v~~a~~~~ 167 (268)
+.|||..+.| ..|.|.|+..+.
T Consensus 149 ~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 149 KTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHhCCCccCCCceeEEEEECCCCC
Confidence 9999999887 567888876544
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.5e-28 Score=212.72 Aligned_cols=164 Identities=25% Similarity=0.427 Sum_probs=137.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||+.+++++|+++|..||+|..+.+ ++|||||+|.+.++|+.|++.|||..+.+...+|.|.++.
T Consensus 90 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 90 ANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred ceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 57999999999999999999999999988877 4689999999999999999999999987556789999876
Q ss_pred cCCCcCCCC--------------C------------------------------------------------C-------
Q 024366 75 GERGRHRDG--------------S------------------------------------------------K------- 85 (268)
Q Consensus 75 ~~~~~~~~~--------------~------------------------------------------------~------- 85 (268)
......... . .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (352)
T TIGR01661 170 NPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPAT 249 (352)
T ss_pred CCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccc
Confidence 432110000 0 0
Q ss_pred ------------CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 86 ------------SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 86 ------------~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.......+.+|||.|| |..+++++|.++|++||.|..+.| .+|||||+|.+.++|..||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 250 DGQTAGLAAGAQIAASDGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred cccccccccCCCCCCCCCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0000112336999999 889999999999999999999988 4789999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..|||..|+|+.|.|.|+..+.
T Consensus 329 ~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 329 LSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999997654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.3e-28 Score=220.32 Aligned_cols=166 Identities=20% Similarity=0.270 Sum_probs=134.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
.|++|||+|||+.+|+++|+++|++||+|.+|.| .+++|||+|.++++|.+|++.|+...+.++|++|.|.|+..+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 3799999999999999999999999999999988 57999999999999999998764433334599999999975432
Q ss_pred cCCCCCC-CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--e--CCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 79 RHRDGSK-SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R--RNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 79 ~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~--~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
....... .........+|+|.|| +..+++++|+++|+.||.|..|.| . .++|||+|.+.++|.+|++.|||..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl-~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i 159 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENP-MYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADI 159 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCC-CCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 2111000 0111122347899999 789999999999999999999988 2 25899999999999999999999999
Q ss_pred CC--cEEEEEEeecCC
Q 024366 154 VD--RVISVEYALKDD 167 (268)
Q Consensus 154 ~g--~~i~v~~a~~~~ 167 (268)
.+ ..|.|+|++...
T Consensus 160 ~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 160 YNGCCTLKIEYAKPTR 175 (481)
T ss_pred cCCceEEEEEEecCCC
Confidence 65 589999987543
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=192.67 Aligned_cols=163 Identities=23% Similarity=0.504 Sum_probs=145.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
-|||+.|.+.++-++|++.|.+||+|.+++| +|||+||.|.+.++|+.|+..|||+.|+ ++.|...|+..
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG--~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG--RRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec--cceeecccccc
Confidence 4899999999999999999999999999988 6899999999999999999999999997 99999999997
Q ss_pred CCCcCCCCCC-----CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhh
Q 024366 76 ERGRHRDGSK-----SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALEST 148 (268)
Q Consensus 76 ~~~~~~~~~~-----~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l 148 (268)
+....-.... -....+..++|||+|+ +..+++++|++.|+.||.|.+|.| .+||+||.|++.+.|..||..+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHh
Confidence 7633222211 1234566889999999 668999999999999999999999 7899999999999999999999
Q ss_pred CCCccCCcEEEEEEeecCCCC
Q 024366 149 DRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 149 ~g~~~~g~~i~v~~a~~~~~~ 169 (268)
|+.+|.|+.++..|-+.....
T Consensus 221 Nntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cCceeCceEEEEeccccCCCC
Confidence 999999999999999876543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=5.1e-28 Score=216.48 Aligned_cols=162 Identities=23% Similarity=0.367 Sum_probs=136.6
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEY-ETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+ .+|+++|+++|+.||.|..|+| .+|+|||+|.+.++|..|++.|||..|. |++|.|.+++...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~--g~~l~v~~s~~~~ 352 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF--GKPLRVCPSKQQN 352 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CceEEEEEccccc
Confidence 46999999998 6999999999999999999988 4799999999999999999999999986 9999999986542
Q ss_pred CcCCC------CC--------------------CCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCC--eEEEEE---
Q 024366 78 GRHRD------GS--------------------KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRI--- 126 (268)
Q Consensus 78 ~~~~~------~~--------------------~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~--v~~~~i--- 126 (268)
..... .. ......+++.+|||.|| |..+++++|+++|+.||. |..+.+
T Consensus 353 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL-p~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI-PLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred ccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC-CCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11100 00 00011346789999999 889999999999999998 777877
Q ss_pred ---eCCeEEEEeccHHHHHHHHHhhCCCccCCcE------EEEEEeecC
Q 024366 127 ---RRNFAFVQFETQEEATKALESTDRSKLVDRV------ISVEYALKD 166 (268)
Q Consensus 127 ---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~------i~v~~a~~~ 166 (268)
.+++|||+|.+.++|.+||..||+..|.+.. |+|.|++++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 2589999999999999999999999999885 999998653
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.9e-28 Score=201.86 Aligned_cols=165 Identities=30% Similarity=0.463 Sum_probs=139.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+.||||.||.++.|++|.-||+..|+|.+++| ++|||||+|.+.++|+.|++.||+..|. .|+.|.|..+.
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Sv 162 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSV 162 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEee
Confidence 57999999999999999999999999999998 6899999999999999999999999886 58888887654
Q ss_pred cC----------CCcCC-----------------------CC--------------------------------------
Q 024366 75 GE----------RGRHR-----------------------DG-------------------------------------- 83 (268)
Q Consensus 75 ~~----------~~~~~-----------------------~~-------------------------------------- 83 (268)
.. .+... +.
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 21 00000 00
Q ss_pred --C-----CCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCc
Q 024366 84 --S-----KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDR 156 (268)
Q Consensus 84 --~-----~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 156 (268)
. .........+.|||.|| +..+|++.|+++|+.||.|+.|...+.||||.|.+.++|.+|++.+||.+|+|.
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred eccCcccCCChhhhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCc
Confidence 0 00011122478999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCCCC
Q 024366 157 VISVEYALKDDSE 169 (268)
Q Consensus 157 ~i~v~~a~~~~~~ 169 (268)
.|.|.+|++....
T Consensus 322 ~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 322 PIEVTLAKPVDKK 334 (506)
T ss_pred eEEEEecCChhhh
Confidence 9999999976543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.9e-27 Score=214.21 Aligned_cols=161 Identities=19% Similarity=0.326 Sum_probs=132.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcC------------CCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCce
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKY------------GRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~------------G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~ 67 (268)
.++|||||||+.+|+++|+++|.+| +.|..+.+ .+|||||+|.+.++|..|| .|+|+.|. |..
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~--g~~ 251 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYS--NVF 251 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEee--Cce
Confidence 4789999999999999999999974 45667776 5799999999999999999 59999886 899
Q ss_pred EEEEEeccCCCcCCC---C---------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---
Q 024366 68 LSVEWARGERGRHRD---G---------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--- 126 (268)
Q Consensus 68 i~v~~~~~~~~~~~~---~---------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--- 126 (268)
|.|............ . ...........+|||+|| |..+++++|+++|+.||.|..+.|
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~ 330 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKD 330 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEec
Confidence 999755432211000 0 000111234579999999 899999999999999999998887
Q ss_pred -----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 127 -----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 127 -----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
.+|||||+|.+.++|+.||+.|||..|.|..|.|.++...
T Consensus 331 ~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 331 IATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4689999999999999999999999999999999998654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.7e-27 Score=217.83 Aligned_cols=151 Identities=23% Similarity=0.510 Sum_probs=134.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+|||+|||+++||++|.++|+.||+|.+|+| ++|||||+|.+.++|++|++.|++..|. |+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~--gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG--GKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeeEEeecccc
Confidence 7999999999999999999999999999998 3589999999999999999999999886 99999999764
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhh
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALEST 148 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l 148 (268)
..... .....+|||.|| +..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|+++|
T Consensus 80 ~~~~~---------~~~~~~vfV~nL-p~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 80 DPSLR---------RSGVGNIFVKNL-DKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred ccccc---------ccCCCceEEcCC-CccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 32211 123467999999 889999999999999999999888 4689999999999999999999
Q ss_pred CCCccCCcEEEEEEeecC
Q 024366 149 DRSKLVDRVISVEYALKD 166 (268)
Q Consensus 149 ~g~~~~g~~i~v~~a~~~ 166 (268)
||..+.|..|.|......
T Consensus 150 ng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 150 NGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred cccEecCceEEEeccccc
Confidence 999999999999766543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.1e-28 Score=200.05 Aligned_cols=155 Identities=26% Similarity=0.493 Sum_probs=137.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCC-ccCCCceEEEEEec
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~g~~i~v~~~~ 74 (268)
+||||.||..|+|.||+++|++||.|.+|.| ++|||||.|.+.++|.+|+.+||++. |.+...+|.|.++.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 6999999999999999999999999999988 58999999999999999999998776 66667899999998
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHh
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~ 147 (268)
.+.... ....+|||+-| +..++|.+++++|.+||.|++|.| .+|||||.|.+.+.|..||+.
T Consensus 116 ~E~er~----------~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 116 GERERI----------VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred hhhhcc----------ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh
Confidence 654321 34678999999 899999999999999999999998 678999999999999999999
Q ss_pred hCCCc-cC--CcEEEEEEeecCCCC
Q 024366 148 TDRSK-LV--DRVISVEYALKDDSE 169 (268)
Q Consensus 148 l~g~~-~~--g~~i~v~~a~~~~~~ 169 (268)
|||.. +. ...|.|.||..++.+
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred hccceeeccCCCceEEEecccCCCc
Confidence 99844 44 578999999877653
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.9e-27 Score=211.74 Aligned_cols=160 Identities=22% Similarity=0.388 Sum_probs=132.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||..+|+++|+++|+.||+|..+.| ++|||||+|.+.++|..|++.|+|+.|. |+.|.|.++.
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~~a~ 373 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQRAC 373 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEECc
Confidence 68999999999999999999999999999887 4799999999999999999999999986 9999999986
Q ss_pred cCCCcCCCCC-----------------CCcCCCCCCcEEEEEccCCCC----------CCHHHHHHhhccCCCeEEEEEe
Q 024366 75 GERGRHRDGS-----------------KSMANQRPTKTLFVINFDPIR----------TRERDIKRHFEPYGNVLHVRIR 127 (268)
Q Consensus 75 ~~~~~~~~~~-----------------~~~~~~~~~~~l~v~~l~~~~----------~~~~~l~~~f~~~g~v~~~~i~ 127 (268)
.......... .......++.+|+|.|+ ... ...++|+++|.+||.|+.|.|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~-~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNL-VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccC-CchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 4322111000 00112346788999998 321 1136799999999999999983
Q ss_pred -----------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 128 -----------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 128 -----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
.|+|||+|.+.++|++|+..|||..|+|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 37899999999999999999999999999999999754
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=2.1e-26 Score=210.67 Aligned_cols=163 Identities=25% Similarity=0.453 Sum_probs=138.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccC--CCceEEEEEe
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGY--DRRRLSVEWA 73 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~--~g~~i~v~~~ 73 (268)
++|||+|||.++|+++|+++|..||+|..+.+ .+|||||+|.+.++|.+|++.|++..+.. .|..|.|.++
T Consensus 179 ~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 179 TNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred CeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecc
Confidence 57999999999999999999999999999988 46899999999999999999999998742 2788888887
Q ss_pred ccCCCcCCC-------CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHH
Q 024366 74 RGERGRHRD-------GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQE 139 (268)
Q Consensus 74 ~~~~~~~~~-------~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~ 139 (268)
..+...... ............+|||.|| +..+++++|+++|+.||.|..|.| .+|+|||+|.+.+
T Consensus 259 ~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~ 337 (562)
T TIGR01628 259 QKRAEREAELRRKFEELQQERKMKAQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPE 337 (562)
T ss_pred cChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHH
Confidence 654322110 0011112345678999999 789999999999999999999988 4689999999999
Q ss_pred HHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 140 EATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 140 ~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
+|.+|+..|||..++|+.|.|.++..+
T Consensus 338 ~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 338 EANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999999999999999999754
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=169.91 Aligned_cols=155 Identities=27% Similarity=0.484 Sum_probs=136.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
-|||||||+..++++.|+++|-+.|+|.+|.| .+|||||+|.++|+|+-|++.||...+. |++|+|..+.
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIrv~kas 87 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIRVNKAS 87 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc--CceeEEEecc
Confidence 48999999999999999999999999999998 5799999999999999999999988787 9999999876
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE--------eCCeEEEEeccHHHHHHHH
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.. + .....+..|||+||++ .+.+..|.+.|+.||.+.. -.| +++++||.|.+.+.+.+|+
T Consensus 88 ~~-~---------~nl~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai 156 (203)
T KOG0131|consen 88 AH-Q---------KNLDVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAI 156 (203)
T ss_pred cc-c---------ccccccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHH
Confidence 21 1 1223357899999955 8999999999999998865 222 6779999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCCCCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDDSER 170 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~~~~ 170 (268)
..|||..+..+.++|.++..+...+
T Consensus 157 ~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 157 GSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999887654
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=7.2e-26 Score=193.09 Aligned_cols=162 Identities=30% Similarity=0.509 Sum_probs=141.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.||||++||+.++.++|.++|+.+|+|..+.+ ++||+||+|.-+++++.|+..+.+..|+ |+.|.|.++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~--Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE--GRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc--ceeccccccc
Confidence 69999999999999999999999999999887 6899999999999999999999999987 9999999988
Q ss_pred cCCCcC-CCC------CC--------CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEE
Q 024366 75 GERGRH-RDG------SK--------SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAF 132 (268)
Q Consensus 75 ~~~~~~-~~~------~~--------~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~af 132 (268)
...... ... .. ......+...|+|.|| |+.+...+|+.+|+.||.|..|.| ..||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 653322 110 00 0111234789999999 999999999999999999999999 348999
Q ss_pred EEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 133 VQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 133 V~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
|+|.+..+|..|++.+|+.+|+|++|.|.||..+.
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999999998765
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.1e-25 Score=201.07 Aligned_cols=147 Identities=29% Similarity=0.449 Sum_probs=126.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|||+|||++++|++|.++|++||+|.+|+| ++|||||+|.+.++|++||+.||+..+. .++.|.|.++.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~ 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISV 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccccc
Confidence 378999999999999999999999999999988 6799999999999999999999999874 46777776543
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCC-eEEEEE---------eCCeEEEEeccHHHHHHH
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI---------RRNFAFVQFETQEEATKA 144 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~-v~~~~i---------~~~~afV~f~~~~~a~~A 144 (268)
..++|||.|| |..+++++|.++|.+++. ++.+.+ .++||||+|.+.++|..|
T Consensus 137 -----------------~~~rLFVgNL-P~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~A 198 (578)
T TIGR01648 137 -----------------DNCRLFVGGI-PKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMA 198 (578)
T ss_pred -----------------cCceeEeecC-CcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHH
Confidence 2578999999 889999999999999863 444443 368999999999999999
Q ss_pred HHhhCC--CccCCcEEEEEEeecCC
Q 024366 145 LESTDR--SKLVDRVISVEYALKDD 167 (268)
Q Consensus 145 ~~~l~g--~~~~g~~i~v~~a~~~~ 167 (268)
+.+|+. ..+.|+.|.|+|+.+..
T Consensus 199 irkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 199 RRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHhhccceEecCceEEEEeecccc
Confidence 998864 45789999999997654
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=6.5e-25 Score=196.32 Aligned_cols=163 Identities=24% Similarity=0.473 Sum_probs=131.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|+|..|. |++|.|.|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~--g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA--GRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC--CEEEEEEEc
Confidence 478999999999999999999999999999988 3689999999999999999999998876 999999996
Q ss_pred ccCCCcCC---------------------------------C---C----------------------C---C-------
Q 024366 74 RGERGRHR---------------------------------D---G----------------------S---K------- 85 (268)
Q Consensus 74 ~~~~~~~~---------------------------------~---~----------------------~---~------- 85 (268)
........ . . . .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 42110000 0 0 0 0
Q ss_pred -----------CcCCCCCCcEEEEEccCCCCCC---------HHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHH
Q 024366 86 -----------SMANQRPTKTLFVINFDPIRTR---------ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEA 141 (268)
Q Consensus 86 -----------~~~~~~~~~~l~v~~l~~~~~~---------~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a 141 (268)
......+..+|+|.||...... .+||++.|.+||.|+.|.| ..|++||+|.+.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0001245678999998222111 3689999999999999988 468999999999999
Q ss_pred HHHHHhhCCCccCCcEEEEEEeecC
Q 024366 142 TKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 142 ~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
.+|++.|||..|+|+.|.+.|....
T Consensus 424 ~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 424 LAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999999999999998643
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2e-24 Score=168.87 Aligned_cols=162 Identities=25% Similarity=0.436 Sum_probs=137.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.|||.+||+.+|..||+++|.+||.|..-+| ++|.+||.|...++|+.|++.|||..-.+...+|.|+++..
T Consensus 129 NLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 129 NLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred ceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 6999999999999999999999998866544 79999999999999999999999998777788999999885
Q ss_pred CCCcCCCC-----------------------C-----------------------------CCcCCCCCCcEEEEEccCC
Q 024366 76 ERGRHRDG-----------------------S-----------------------------KSMANQRPTKTLFVINFDP 103 (268)
Q Consensus 76 ~~~~~~~~-----------------------~-----------------------------~~~~~~~~~~~l~v~~l~~ 103 (268)
........ . ..........+|||.|| .
T Consensus 209 Psq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL-s 287 (360)
T KOG0145|consen 209 PSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL-S 287 (360)
T ss_pred cccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec-C
Confidence 53211100 0 00011223579999999 6
Q ss_pred CCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 104 IRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
.++.+.-|.++|.+||.|..|.| .+||+||.+.+-++|..||..|||..++++.|.|.|...+
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 78999999999999999999998 6789999999999999999999999999999999997543
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.3e-25 Score=171.69 Aligned_cols=151 Identities=25% Similarity=0.511 Sum_probs=135.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+.|+|--||.++|+|||+.+|..+|+|+.|++ +-||+||.|.++++|++|+..|||..+. .++|+|.|+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ--~KTIKVSyAR 119 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ--NKTIKVSYAR 119 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec--cceEEEEecc
Confidence 57899999999999999999999999999998 5699999999999999999999999997 8999999998
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHH
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~ 146 (268)
+.. .......|||.+| |..+++.||+++|++||.|..-.| .+|.+||.|+...+|++||+
T Consensus 120 PSs-----------~~Ik~aNLYvSGl-PktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 120 PSS-----------DSIKDANLYVSGL-PKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred CCh-----------hhhcccceEEecC-CccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 543 2334668999999 899999999999999999876555 78999999999999999999
Q ss_pred hhCCCccCC--cEEEEEEeecCC
Q 024366 147 STDRSKLVD--RVISVEYALKDD 167 (268)
Q Consensus 147 ~l~g~~~~g--~~i~v~~a~~~~ 167 (268)
.|||.+--| .+|+|+|+..+.
T Consensus 188 ~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCcc
Confidence 999988765 689999997664
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.5e-24 Score=167.74 Aligned_cols=155 Identities=44% Similarity=0.697 Sum_probs=134.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD 82 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~ 82 (268)
..||||+||+.+.+.+|+.||..||.|.+|.|..+|+||+|.+..+|..|+..||+..|. +..+.|+|+.........
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~--~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELC--GERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceec--ceeeeeecccccccccCC
Confidence 469999999999999999999999999999999999999999999999999999999997 666999998854222111
Q ss_pred ---------CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 83 ---------GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 83 ---------~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
...........+.|.|.++ +..+.+++|.+.|.++|.+....+..+++||+|...++|..|+..|++..+
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccc-hhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhh
Confidence 0111122344677889999 788999999999999999977777899999999999999999999999999
Q ss_pred CCcEEEE
Q 024366 154 VDRVISV 160 (268)
Q Consensus 154 ~g~~i~v 160 (268)
.++.|++
T Consensus 159 ~~~~l~~ 165 (216)
T KOG0106|consen 159 NGRRISV 165 (216)
T ss_pred cCceeee
Confidence 9999999
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=184.43 Aligned_cols=159 Identities=27% Similarity=0.548 Sum_probs=139.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM-----------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+|||.||++.+|.++|..+|...|.|..|.| +.|||||+|.++++|..|++.|+|+.+. |+.|.|.+
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld--GH~l~lk~ 594 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD--GHKLELKI 594 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec--CceEEEEe
Confidence 4999999999999999999999999999988 2399999999999999999999999986 99999999
Q ss_pred eccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHH
Q 024366 73 ARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKA 144 (268)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A 144 (268)
+..+...... +.......++.|+|.|| |+.++..+++++|..||.|..|.| .+|||||+|-++++|..|
T Consensus 595 S~~k~~~~~g--K~~~~kk~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 595 SENKPASTVG--KKKSKKKKGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred ccCccccccc--cccccccccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHH
Confidence 8833222222 22233344789999999 999999999999999999999999 468999999999999999
Q ss_pred HHhhCCCccCCcEEEEEEeecCC
Q 024366 145 LESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 145 ~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
+.+|.++.+.|+.|.++||....
T Consensus 672 ~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 672 FDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHhhcccceechhhheehhccch
Confidence 99999999999999999998654
No 25
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.9e-22 Score=148.00 Aligned_cols=159 Identities=33% Similarity=0.533 Sum_probs=130.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||.++.+.+|+.||-+||.|..|.| ...||||+|+++.+|+.|+..-+|..+. |..|.|+++..-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC--cceEEEEeccCC
Confidence 579999999999999999999999999999998 3579999999999999999988888885 999999998765
Q ss_pred CCcCCCC---------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-eCCeEEEEeccHHH
Q 024366 77 RGRHRDG---------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-RRNFAFVQFETQEE 140 (268)
Q Consensus 77 ~~~~~~~---------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-~~~~afV~f~~~~~ 140 (268)
....... ..-.+.......|+|.+| |...+|+||++.+.+.|.|....+ ..+.+.|+|...++
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~eD 162 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKED 162 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehhh
Confidence 3221111 001112223468999999 789999999999999999999988 67899999999999
Q ss_pred HHHHHHhhCCCccC--CcEEEEEEe
Q 024366 141 ATKALESTDRSKLV--DRVISVEYA 163 (268)
Q Consensus 141 a~~A~~~l~g~~~~--g~~i~v~~a 163 (268)
++-|+.+|+...+. |.+..+..-
T Consensus 163 MkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 163 MKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred HHHHHHhhccccccCcCcEeeEEec
Confidence 99999999887665 555444443
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.1e-24 Score=175.18 Aligned_cols=163 Identities=20% Similarity=0.406 Sum_probs=138.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.+.||||.|.+.+.|+.|+..|..||+|+.|.| ++|||||+|.-+|.|..|++.|||..++ |+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG--GRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc--CccccccCC
Confidence 357999999999999999999999999999998 6899999999999999999999999997 999999855
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.+......--...+.+...-+.|||..+ ..+.+++||+.+|+.||+|..|.+ .+||+||+|.+.+...+||
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 4332211111111223344679999999 468999999999999999999999 6789999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..||-..++|..|.|-.+..+.
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 9999999999999998766443
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=9e-23 Score=174.33 Aligned_cols=161 Identities=30% Similarity=0.563 Sum_probs=133.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
.|+|.|||+.|.+.+|+.+|+.||.|..|.|+ .|||||.|....+|..|++.||+..|. |++|.|.|+-.+
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~--gR~VAVDWAV~K 196 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID--GRPVAVDWAVDK 196 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec--CceeEEeeeccc
Confidence 58999999999999999999999999999993 499999999999999999999999986 999999998643
Q ss_pred CCcCC------------------------CC---------------C-------------C----------C--------
Q 024366 77 RGRHR------------------------DG---------------S-------------K----------S-------- 86 (268)
Q Consensus 77 ~~~~~------------------------~~---------------~-------------~----------~-------- 86 (268)
..... .+ . . .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 11000 00 0 0 0
Q ss_pred ---------cCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhh-
Q 024366 87 ---------MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALEST- 148 (268)
Q Consensus 87 ---------~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l- 148 (268)
........+|||.|| |+.+++++|.+.|++||.|..+.| ++|.|||.|.+..+|+.||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 001112379999999 999999999999999999999877 7899999999999999999976
Q ss_pred ----CC-CccCCcEEEEEEeecCC
Q 024366 149 ----DR-SKLVDRVISVEYALKDD 167 (268)
Q Consensus 149 ----~g-~~~~g~~i~v~~a~~~~ 167 (268)
.| ..++|+.|.|..|..+.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 23 56889999999987553
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.5e-21 Score=143.10 Aligned_cols=78 Identities=27% Similarity=0.443 Sum_probs=72.3
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
..++|||+|| +..+++.||+.+|..||.|..|.| +.|||||||+++.+|.+|+..|+|..|+|..|.|+++.....
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3789999999 889999999999999999999998 789999999999999999999999999999999999987665
Q ss_pred CC
Q 024366 169 ER 170 (268)
Q Consensus 169 ~~ 170 (268)
..
T Consensus 88 ~~ 89 (195)
T KOG0107|consen 88 GS 89 (195)
T ss_pred cc
Confidence 43
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=8.5e-22 Score=164.07 Aligned_cols=165 Identities=23% Similarity=0.470 Sum_probs=139.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCC-ccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~g~~i~v~~~ 73 (268)
.++||||.|++.+||++|+++|..||.|++|.| ++|||||+|.+.+.|..|+++|||.. ++++..+|.|.|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 368999999999999999999999999999988 78999999999999999999999986 7778899999998
Q ss_pred ccCCCcCCCC----------------------------------------------------------------------
Q 024366 74 RGERGRHRDG---------------------------------------------------------------------- 83 (268)
Q Consensus 74 ~~~~~~~~~~---------------------------------------------------------------------- 83 (268)
..++.+....
T Consensus 204 Dtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~ 283 (510)
T KOG0144|consen 204 DTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAA 283 (510)
T ss_pred ccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhh
Confidence 7542110000
Q ss_pred --------------------------------------------------------------------------------
Q 024366 84 -------------------------------------------------------------------------------- 83 (268)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (268)
T Consensus 284 ~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~ 363 (510)
T KOG0144|consen 284 ATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAAS 363 (510)
T ss_pred cccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccc
Confidence
Q ss_pred ---------------------------------------------------CCCcCCCCCCcEEEEEccCCCCCCHHHHH
Q 024366 84 ---------------------------------------------------SKSMANQRPTKTLFVINFDPIRTRERDIK 112 (268)
Q Consensus 84 ---------------------------------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~ 112 (268)
.....+.+....|||.+| |.+.-+.||-
T Consensus 364 ~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhl-Pqefgdq~l~ 442 (510)
T KOG0144|consen 364 LANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHL-PQEFGDQDLI 442 (510)
T ss_pred ccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeC-chhhhhHHHH
Confidence 000112334578999999 8899999999
Q ss_pred HhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 113 RHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 113 ~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..|..||.|+..++ .+-|+||.|++..+|..||..|||..++.++++|.....+.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999987665 55699999999999999999999999999999999987654
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.1e-21 Score=165.19 Aligned_cols=143 Identities=23% Similarity=0.460 Sum_probs=130.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
.+|||| +++|+..|.++|+.+|+|..|++ +-|||||.|.++++|++|+..||...+. |++|.|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~--~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLK--GKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccC--CcEEEeehhccCC
Confidence 479999 99999999999999999999998 4689999999999999999999999997 9999999987431
Q ss_pred CcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 78 GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
..|||.|| +..++..+|.++|+.||.|+.|.+ .+|| ||+|++.++|++|++.|||.
T Consensus 77 ----------------~~~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 77 ----------------SLVFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred ----------------ceeeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc
Confidence 12999999 678999999999999999999999 6789 99999999999999999999
Q ss_pred ccCCcEEEEEEeecCCC
Q 024366 152 KLVDRVISVEYALKDDS 168 (268)
Q Consensus 152 ~~~g~~i~v~~a~~~~~ 168 (268)
.+.|+.|.|.....+..
T Consensus 139 ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEE 155 (369)
T ss_pred ccCCCeeEEeeccchhh
Confidence 99999999988765543
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.87 E-value=8e-21 Score=146.69 Aligned_cols=160 Identities=24% Similarity=0.502 Sum_probs=137.0
Q ss_pred CccEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELER----LFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~----~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+.||||.||+..+..++|+. +|++||+|.+|.+ .+|.|||.|.+.+.|..|+..|+|.+|. |++|.|.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--gK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY--GKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc--Cchhheec
Confidence 35999999999999999988 9999999999988 5799999999999999999999999998 99999999
Q ss_pred eccCCCcCCC---------------------------CCCC------------cCCCCCCcEEEEEccCCCCCCHHHHHH
Q 024366 73 ARGERGRHRD---------------------------GSKS------------MANQRPTKTLFVINFDPIRTRERDIKR 113 (268)
Q Consensus 73 ~~~~~~~~~~---------------------------~~~~------------~~~~~~~~~l~v~~l~~~~~~~~~l~~ 113 (268)
++.+...-.. +... ....++...|++.|| |.+++.+.|..
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni-P~es~~e~l~~ 165 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI-PSESESEMLSD 165 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC-CcchhHHHHHH
Confidence 9865321100 0000 123567889999999 88999999999
Q ss_pred hhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccC-CcEEEEEEee
Q 024366 114 HFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYAL 164 (268)
Q Consensus 114 ~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~a~ 164 (268)
+|.+|.....+.+ ..+.|||+|.+...|..|...+++..+. ...+.|.++.
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999998888887 6789999999999999999999998887 8889888874
No 32
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3.8e-21 Score=151.16 Aligned_cols=165 Identities=23% Similarity=0.467 Sum_probs=138.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCC-ccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~g~~i~v~~~~ 74 (268)
++||||.|.+.-.|||++.+|..||+|.+|.+ +||||||.|.+.-+|..|+..|+|.. +.+....|.|+++.
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 68999999999999999999999999999988 68999999999999999999999886 44456788999876
Q ss_pred cCCCcC--------------------------------------------------------------------------
Q 024366 75 GERGRH-------------------------------------------------------------------------- 80 (268)
Q Consensus 75 ~~~~~~-------------------------------------------------------------------------- 80 (268)
.+++..
T Consensus 100 TdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv 179 (371)
T KOG0146|consen 100 TDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPV 179 (371)
T ss_pred chHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccCCc
Confidence 331000
Q ss_pred --------CCC---------------------------------------------------------------------
Q 024366 81 --------RDG--------------------------------------------------------------------- 83 (268)
Q Consensus 81 --------~~~--------------------------------------------------------------------- 83 (268)
...
T Consensus 180 ~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypa 259 (371)
T KOG0146|consen 180 TPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPA 259 (371)
T ss_pred CccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhcch
Confidence 000
Q ss_pred ----------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHH
Q 024366 84 ----------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQE 139 (268)
Q Consensus 84 ----------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~ 139 (268)
.....+.+..+.|||..| |.+..+.+|.++|-.||.|+..++ .+-|+||.|+|+.
T Consensus 260 ays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~ 338 (371)
T KOG0146|consen 260 AYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPA 338 (371)
T ss_pred hhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCch
Confidence 000123455789999999 889999999999999999987666 6779999999999
Q ss_pred HHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 140 EATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 140 ~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
.|+.||..|||..|+-++|+|.+.++++.
T Consensus 339 SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 339 SAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999999999877654
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=2.7e-20 Score=141.13 Aligned_cols=79 Identities=35% Similarity=0.500 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
.......|.|-|| .+.++.++|..+|++||.|-+|.| .+|||||.|.+..+|++|+++|+|..|+|+.|.|
T Consensus 9 dv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4455789999999 899999999999999999999999 6789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
++|+-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 99975443
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.5e-19 Score=132.55 Aligned_cols=75 Identities=44% Similarity=0.662 Sum_probs=70.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
|.++||||||+..+++.||+.+|..||+|..||| +.|||||||.++.+|+.|+..|+|..|. |..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c--G~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC--GSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc--CceEEEEeecCCc
Confidence 4689999999999999999999999999999999 6899999999999999999999999986 9999999988653
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=4.9e-21 Score=164.28 Aligned_cols=161 Identities=27% Similarity=0.459 Sum_probs=136.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+|||+-.|+..+++.+|.+||..+|+|.+|.| ++|.|||+|.+++.+..|+ +|.|+.+. |.+|.|+...
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll--g~pv~vq~sE 256 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL--GVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc--CceeEecccH
Confidence 68888889999999999999999999999988 6899999999999999999 69999987 9999999876
Q ss_pred cCCCcCCCCCCC---cCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHH
Q 024366 75 GERGRHRDGSKS---MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATK 143 (268)
Q Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~ 143 (268)
.++......... .....|...|||+|| -.++++++|+.+|++||.|..|.+ .+||+||+|.+.++|.+
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 554432211111 112334445999999 689999999999999999999988 57899999999999999
Q ss_pred HHHhhCCCccCCcEEEEEEeecCC
Q 024366 144 ALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 144 A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
|+++|||.+|.|+.|.|......-
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHhccceecCceEEEEEeeeec
Confidence 999999999999999998876544
No 36
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.6e-20 Score=158.02 Aligned_cols=154 Identities=25% Similarity=0.468 Sum_probs=136.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
|||.||++.++..+|.++|+.||+|..|++ ++|| ||+|.++++|.+|++.|||..+. +++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~--~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN--GKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC--CCeeEEeeccchhh
Confidence 899999999999999999999999999999 6899 99999999999999999999997 99999988776544
Q ss_pred cCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 79 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
....... ....-..++|.++ +..+++..|.++|..+|.|..+.+ .++|+||+|+++++|..|++.|++.
T Consensus 156 r~~~~~~---~~~~~t~v~vk~~-~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGE---YKKRFTNVYVKNL-EEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccc---hhhhhhhhheecc-ccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 3322211 3344567899999 789999999999999999999888 5789999999999999999999999
Q ss_pred ccCCcEEEEEEeec
Q 024366 152 KLVDRVISVEYALK 165 (268)
Q Consensus 152 ~~~g~~i~v~~a~~ 165 (268)
.+.+..+.|.-+..
T Consensus 232 ~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 232 IFGDKELYVGRAQK 245 (369)
T ss_pred cCCccceeeccccc
Confidence 99999999988765
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=2.9e-20 Score=159.57 Aligned_cols=160 Identities=24% Similarity=0.466 Sum_probs=127.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
||||||..++|+++|..+|+.||.|+.|.+ .+||+||+|.+.++|.+|++.|||..| .|..|+|......
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEeeee
Confidence 899999999999999999999999999988 589999999999999999999999555 5999998765432
Q ss_pred CCcCCC--------------------C-----------------------------------------CCCcCCC-----
Q 024366 77 RGRHRD--------------------G-----------------------------------------SKSMANQ----- 90 (268)
Q Consensus 77 ~~~~~~--------------------~-----------------------------------------~~~~~~~----- 90 (268)
-..... + .....+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 111100 0 0001111
Q ss_pred --CCCcEEEEEcc-CCCCCC--------HHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCc
Q 024366 91 --RPTKTLFVINF-DPIRTR--------ERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDR 156 (268)
Q Consensus 91 --~~~~~l~v~~l-~~~~~~--------~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 156 (268)
.++.++.+.|+ +|...+ .+|+.+.+.+||.|..|.| .-|+.||.|.+.++|..|+.+|||..|.|+
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr 518 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGR 518 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccc
Confidence 45667777776 332222 2778888899999999999 348999999999999999999999999999
Q ss_pred EEEEEEeecC
Q 024366 157 VISVEYALKD 166 (268)
Q Consensus 157 ~i~v~~a~~~ 166 (268)
.|++.|....
T Consensus 519 ~Ita~~~~~~ 528 (549)
T KOG0147|consen 519 MITAKYLPLE 528 (549)
T ss_pred eeEEEEeehh
Confidence 9999997643
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=5.9e-19 Score=158.32 Aligned_cols=70 Identities=17% Similarity=0.468 Sum_probs=65.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||+++++++|+++|+.||+|..+.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++.
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg--Gr~LrV~kAi 282 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVGKCV 282 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEecC
Confidence 58999999999999999999999999999988 4799999999999999999999999886 9999998865
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=7.1e-20 Score=151.75 Aligned_cols=159 Identities=26% Similarity=0.462 Sum_probs=133.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++||||+|++.+|++.|+..|.+||+|.+|.+ +++|+||+|.+++.+.++|. .....++|+.|.++.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~---~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN---ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec---ccccccCCccccceec
Confidence 478999999999999999999999999999988 45999999999999888864 3333346999998888
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.+.......... ....+|||++| +..+++++++++|.+||.|..+.+ .++|+||.|.+.+.+.+++
T Consensus 83 v~r~~~~~~~~~-----~~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 83 VSREDQTKVGRH-----LRTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred cCcccccccccc-----cceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec
Confidence 766544333222 26789999999 889999999999999998888777 6789999999999999988
Q ss_pred HhhCCCccCCcEEEEEEeecCCCCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDDSER 170 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~~~~ 170 (268)
. ..-+.|+|+.+.|..|.++....
T Consensus 157 ~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 157 L-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred c-cceeeecCceeeEeeccchhhcc
Confidence 7 47799999999999998876543
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.9e-20 Score=144.30 Aligned_cols=130 Identities=22% Similarity=0.510 Sum_probs=107.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHR 81 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~ 81 (268)
.+||||+||+..+||+-|..||.++|+|+.++|- |. .|+|.|+.....+
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i-------~~----------------------e~~v~wa~~p~nQ-- 54 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI-------FD----------------------ELKVNWATAPGNQ-- 54 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceee-------hh----------------------hhccccccCcccC--
Confidence 5899999999999999999999999999988752 21 2445555433111
Q ss_pred CCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 82 DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 82 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
........--++|+.| ...++-++|++.|.+||+|.++.| .+||+||.|-+.++|+.||..|||..|
T Consensus 55 ----sk~t~~~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 55 ----SKPTSNQHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred ----CCCccccceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 1112223567899999 678999999999999999999988 789999999999999999999999999
Q ss_pred CCcEEEEEEeecCC
Q 024366 154 VDRVISVEYALKDD 167 (268)
Q Consensus 154 ~g~~i~v~~a~~~~ 167 (268)
+++.|...||..+.
T Consensus 130 G~R~IRTNWATRKp 143 (321)
T KOG0148|consen 130 GRRTIRTNWATRKP 143 (321)
T ss_pred ccceeeccccccCc
Confidence 99999999998766
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.78 E-value=3.5e-18 Score=131.21 Aligned_cols=151 Identities=26% Similarity=0.411 Sum_probs=117.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---e------CCEEEEEEcCHHHHHHHHHhcCCCCccC-CCceEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM---K------SGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~------~g~afV~f~~~~~a~~a~~~l~~~~~~~-~g~~i~v~~ 72 (268)
+||||.+||.++...+|..+|..|--.+.+.| . +-+|||+|.+..+|.+|+++|||+.|-. .+..|+|++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 69999999999999999999999866665555 2 3699999999999999999999998732 378999999
Q ss_pred eccCCCcCCC--CC--------------------------------------------C---------------------
Q 024366 73 ARGERGRHRD--GS--------------------------------------------K--------------------- 85 (268)
Q Consensus 73 ~~~~~~~~~~--~~--------------------------------------------~--------------------- 85 (268)
++...+.... .. +
T Consensus 115 AKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~ 194 (284)
T KOG1457|consen 115 AKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSAN 194 (284)
T ss_pred hhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCccc
Confidence 8743111000 00 0
Q ss_pred --------CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCC--eEEEEeccHHHHHHHHHhhCCCcc
Q 024366 86 --------SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRN--FAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 86 --------~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~--~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
.......+.+|||.|| ..++++++|+++|+.|.....+.| ..| .||++|++.+.|..|+..|+|..|
T Consensus 195 a~l~ks~q~~~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 195 AHLEKSSQGGSGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhhcccccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 0001122468999999 779999999999999987777777 222 899999999999999999998665
Q ss_pred C
Q 024366 154 V 154 (268)
Q Consensus 154 ~ 154 (268)
.
T Consensus 274 s 274 (284)
T KOG1457|consen 274 S 274 (284)
T ss_pred c
Confidence 3
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=2.2e-17 Score=134.41 Aligned_cols=161 Identities=22% Similarity=0.347 Sum_probs=129.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIER--------VDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDR 65 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g 65 (268)
+++.|||.|||.++|.+++.++|..||.|.. |+| .+|=|++.|-..+++..|++.|++..|. |
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r--g 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR--G 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc--C
Confidence 3678999999999999999999999998752 444 4799999999999999999999999997 9
Q ss_pred ceEEEEEeccCCCcCCCC---------------------------CCCcCCCCCCcEEEEEcc-CC--CCCC-------H
Q 024366 66 RRLSVEWARGERGRHRDG---------------------------SKSMANQRPTKTLFVINF-DP--IRTR-------E 108 (268)
Q Consensus 66 ~~i~v~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~l~v~~l-~~--~~~~-------~ 108 (268)
+.|+|+.|+-..+..... ...........+|.+.|+ .| ...+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999876432211110 001122344678888887 11 1122 3
Q ss_pred HHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 109 RDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
++|.+.+.+||.|..|.| +.|.+.|.|.+.++|..||+.|+|..|+|+.|+...-
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 667788999999999998 7899999999999999999999999999999998765
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=4.7e-18 Score=127.43 Aligned_cols=75 Identities=28% Similarity=0.547 Sum_probs=69.3
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
++++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|++|++.|++..|. |+.|+|++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--Gr~l~V~~ 110 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--GRHIRVNP 110 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEe
Confidence 4689999999999999999999999999999988 3799999999999999999999999886 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87553
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=3.6e-17 Score=122.65 Aligned_cols=78 Identities=27% Similarity=0.455 Sum_probs=71.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
....++|||.|| +..+++++|+++|++||.|..+.| .++||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445779999999 889999999999999999999988 36899999999999999999999999999999999
Q ss_pred EeecCCC
Q 024366 162 YALKDDS 168 (268)
Q Consensus 162 ~a~~~~~ 168 (268)
++..+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9976554
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=6e-17 Score=137.66 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=122.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
-|-+.+|||+||++||.+||+.|+ |+++.+ ..|-|||+|.++|++++|++ .+...+. .+-|.|..+....
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg--~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG--HRYIEVFTAGGAE 87 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhC--CceEEEEccCCcc
Confidence 577899999999999999999996 888777 46899999999999999997 6666665 7788888776543
Q ss_pred CcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE-------eCCeEEEEeccHHHHHHHHHhhC
Q 024366 78 GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i-------~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
..............+...|-+.+| |+.|+++||.+||+..-.|.. |.+ +.+.|||+|++.+.|+.|+.. |
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-h 165 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-H 165 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-H
Confidence 322111111122246778999999 999999999999997766655 323 567999999999999999996 6
Q ss_pred CCccCCcEEEEEEee
Q 024366 150 RSKLVDRVISVEYAL 164 (268)
Q Consensus 150 g~~~~g~~i~v~~a~ 164 (268)
...|+-+-|.|-.+.
T Consensus 166 re~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSS 180 (510)
T ss_pred HHhhccceEEeehhH
Confidence 677888888876654
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=3.5e-17 Score=144.44 Aligned_cols=159 Identities=29% Similarity=0.412 Sum_probs=130.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeC-C-EEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc-
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-G-FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR- 79 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~-g-~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~- 79 (268)
+.|+|+|||..+..++|..+|..||+|..|.|+. | .|+|+|.++.+|.+|+..|....+. ..++.+.|+....-.
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k--~~plyle~aP~dvf~~ 463 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFK--SAPLYLEWAPEDVFTE 463 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhc--cCccccccChhhhccC
Confidence 6799999999999999999999999999998854 3 5999999999999999999988875 777888776522111
Q ss_pred -C-----------C----C--------C----CCC----------cCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCe
Q 024366 80 -H-----------R----D--------G----SKS----------MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV 121 (268)
Q Consensus 80 -~-----------~----~--------~----~~~----------~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v 121 (268)
+ . . . ... .......++|||.|| ++.++.++|...|...|.|
T Consensus 464 ~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNl-nf~Tt~e~l~~~F~k~G~V 542 (725)
T KOG0110|consen 464 DPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNL-NFDTTLEDLEDLFSKQGTV 542 (725)
T ss_pred CccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcC-CcccchhHHHHHHHhcCeE
Confidence 0 0 0 0 000 000111233999999 8999999999999999999
Q ss_pred EEEEE-----------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 122 LHVRI-----------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 122 ~~~~i-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
..+.| ..|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++.
T Consensus 543 lS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 543 LSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99988 23899999999999999999999999999999999998
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.72 E-value=2.4e-16 Score=130.97 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=133.7
Q ss_pred CccEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp-~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+..|.|.||. ..+|++-|..+|..||.|..|+| ++..|+|+|.+...|..|++.|+|..+. |+.|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~--gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY--GKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec--CceEEEeeccCcc
Confidence 4678999996 55999999999999999999999 5689999999999999999999999997 8999999988553
Q ss_pred CcCCCC-----------------------CC-CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE---eCC
Q 024366 78 GRHRDG-----------------------SK-SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI---RRN 129 (268)
Q Consensus 78 ~~~~~~-----------------------~~-~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i---~~~ 129 (268)
-..... .+ .....+|+.+|++.|+ |..+++++|++.|...|...+ ..+ .+.
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~k 453 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRK 453 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcc
Confidence 221110 01 1123467889999999 889999999999999886544 444 456
Q ss_pred eEEEEeccHHHHHHHHHhhCCCccCC-cEEEEEEeec
Q 024366 130 FAFVQFETQEEATKALESTDRSKLVD-RVISVEYALK 165 (268)
Q Consensus 130 ~afV~f~~~~~a~~A~~~l~g~~~~g-~~i~v~~a~~ 165 (268)
+|++.+++.++|..|+..++++.+++ ..+.|+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999999885 5999999864
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4.3e-16 Score=124.63 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=75.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...|-+||||.-| ++.+++..|+..|..||.|..|.| ++|||||+|++..++.+|.+..+|.+|+|+.|.|
T Consensus 97 ~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 4467899999999 899999999999999999999988 7899999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 024366 161 EYALKDDSERD 171 (268)
Q Consensus 161 ~~a~~~~~~~~ 171 (268)
.+-....-..+
T Consensus 176 DvERgRTvkgW 186 (335)
T KOG0113|consen 176 DVERGRTVKGW 186 (335)
T ss_pred Eeccccccccc
Confidence 99877765543
No 49
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.71 E-value=9.9e-18 Score=138.35 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=110.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
..|.|.||.+++|.++|+.||..+|+|.++.| ....|||.|.+...+..|.+..|...+ +..|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv---draliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV---DRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee---eeeEEEE
Confidence 36899999999999999999999999999988 247999999999999999875555544 5666655
Q ss_pred EeccCCCc------------------CCCCC-----------C-C-----cCCC----------CCCcEEEEEccCCCCC
Q 024366 72 WARGERGR------------------HRDGS-----------K-S-----MANQ----------RPTKTLFVINFDPIRT 106 (268)
Q Consensus 72 ~~~~~~~~------------------~~~~~-----------~-~-----~~~~----------~~~~~l~v~~l~~~~~ 106 (268)
+....... +.++. + . .+.. ....+|+|++| +..+
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl-~~~~ 163 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL-ISAA 163 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc-hhhh
Confidence 43322100 00000 0 0 0000 11257889999 7788
Q ss_pred CHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 107 RERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 107 ~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...++-++|..+|.|....+ ...+|.|+|........|+. ++|.++.-+...+.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRA 221 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhh
Confidence 88999999999999988777 34588899998888888888 57777764444333
No 50
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.70 E-value=5.6e-16 Score=117.82 Aligned_cols=71 Identities=42% Similarity=0.714 Sum_probs=66.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|.|-||...+|.++|..+|++||.|-+|.| ++|||||.|....+|+.|+++|+|..|. |+.|.|++|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--gRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--GRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec--cceeeehhh
Confidence 368999999999999999999999999999999 5799999999999999999999999985 999999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 7
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=7.8e-17 Score=140.11 Aligned_cols=162 Identities=24% Similarity=0.442 Sum_probs=129.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.+|||++||..+++.++.+++..||+++...+ ++||||.+|.++.....|+..|||+.++ +++|.|..+.
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg--d~~lvvq~A~ 367 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG--DKKLVVQRAI 367 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc--CceeEeehhh
Confidence 47999999999999999999999999988766 6899999999999999999999999997 8999998776
Q ss_pred cCCCcCCCCCC-------------CcCCCCCCcEEEEEcc-CCCCCC-H-------HHHHHhhccCCCeEEEEEe-----
Q 024366 75 GERGRHRDGSK-------------SMANQRPTKTLFVINF-DPIRTR-E-------RDIKRHFEPYGNVLHVRIR----- 127 (268)
Q Consensus 75 ~~~~~~~~~~~-------------~~~~~~~~~~l~v~~l-~~~~~~-~-------~~l~~~f~~~g~v~~~~i~----- 127 (268)
........+.. .+....++..|++.|+ .+.+.. + ++++..+.+||.|..|.|+
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 44322211111 1334556677777776 111111 1 5677788999999999993
Q ss_pred ------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 128 ------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 128 ------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
-|..||+|.+.++++.|+++|+|.+|.|++|...|.-..
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 358999999999999999999999999999999987543
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=1.8e-15 Score=126.80 Aligned_cols=158 Identities=28% Similarity=0.472 Sum_probs=128.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFS-KYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~-~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+.+||+|||+++...+|+.||. +.|+|+.|.+ .+|||.|||+++|.+++|++.||...+. |++|+|+-..
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~--GR~l~vKEd~ 122 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN--GRELVVKEDH 122 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc--CceEEEeccC
Confidence 5699999999999999999996 5689999988 6899999999999999999999999997 9999998654
Q ss_pred cCCCcC-----------------------------------------CCC----C-------------------------
Q 024366 75 GERGRH-----------------------------------------RDG----S------------------------- 84 (268)
Q Consensus 75 ~~~~~~-----------------------------------------~~~----~------------------------- 84 (268)
..+-.. .+. .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 321000 000 0
Q ss_pred ----CCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 85 ----KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 85 ----~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
......+...++||.|| .+.+....|++.|...|.|..|.+ .+++|.++|.++-+|..||..|++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl-~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANL-DYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeecc-ccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 00012334578999999 799999999999999999988887 678999999999999999999998777
Q ss_pred CCcEEEEEEe
Q 024366 154 VDRVISVEYA 163 (268)
Q Consensus 154 ~g~~i~v~~a 163 (268)
...+.++...
T Consensus 282 ~~~~~~~Rl~ 291 (608)
T KOG4212|consen 282 FDRRMTVRLD 291 (608)
T ss_pred ccccceeecc
Confidence 7777776664
No 53
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2.8e-16 Score=110.46 Aligned_cols=72 Identities=35% Similarity=0.673 Sum_probs=67.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
|+|||||||+.-+|||+|.+||..+|+|..|.| +-|||||+|...++|+.|++.++++.+. .++|.|.|.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd--dr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD--DRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc--ccceeeecc
Confidence 689999999999999999999999999999998 3599999999999999999999999995 999999986
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=5.1e-16 Score=102.20 Aligned_cols=63 Identities=33% Similarity=0.713 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
|||+|||+++|+++|+++|++||+|..+.+ .+++|||+|.+.++|++|++.|+|..+. |++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~--~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN--GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC--ccCcC
Confidence 799999999999999999999999999988 3689999999999999999999999886 77764
No 55
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=121.26 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=67.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+.++|||+|||+.+|+++|+++|+.||+|++|.| .+|||||+|.++++|..||. |+|..|. |+.|.|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~--gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV--DQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC--CceEEEEeccC
Confidence 3589999999999999999999999999999999 47999999999999999995 9999986 99999999875
Q ss_pred C
Q 024366 76 E 76 (268)
Q Consensus 76 ~ 76 (268)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.62 E-value=1.6e-13 Score=113.19 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=130.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
|-.|+|.+|-..++|.+|.+.++.||+|..+.+ .+..|+|+|++.+.|+.++...-..++.+.|+..-+.++..+.-.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE 110 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc
Confidence 446899999999999999999999999988877 678999999999999999986666667777888888887543222
Q ss_pred CCCCCCCcCCCCCCcEEEEEccC-CCCCCHHHHHHhhccCCCeEEEEE-eC-C-eEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 80 HRDGSKSMANQRPTKTLFVINFD-PIRTRERDIKRHFEPYGNVLHVRI-RR-N-FAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~v~~l~-~~~~~~~~l~~~f~~~g~v~~~~i-~~-~-~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
.. ..+...+...|.+.-|. -+.++.+.|..++...|+|..|.| .+ + .|.|||++.+.|++|.+.|||..|.-
T Consensus 111 R~----g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 111 RP----GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred cC----CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccc
Confidence 11 12334456666655552 477889999999999999999888 33 2 79999999999999999999998863
Q ss_pred --cEEEEEEeecCC
Q 024366 156 --RVISVEYALKDD 167 (268)
Q Consensus 156 --~~i~v~~a~~~~ 167 (268)
.+|+|+||++..
T Consensus 187 GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTR 200 (494)
T ss_pred cceeEEEEecCcce
Confidence 688999998664
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=5.6e-15 Score=110.53 Aligned_cols=77 Identities=27% Similarity=0.467 Sum_probs=70.9
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
..+.|||+|| |..+.+.+|+++|.+||.|.+|.+ +..||||+|+++.+|+.||..-+|..++|..|.|+|+..-
T Consensus 5 ~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4689999999 889999999999999999999999 4569999999999999999999999999999999999876
Q ss_pred CCC
Q 024366 167 DSE 169 (268)
Q Consensus 167 ~~~ 169 (268)
...
T Consensus 84 r~s 86 (241)
T KOG0105|consen 84 RSS 86 (241)
T ss_pred Ccc
Confidence 533
No 58
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.1e-14 Score=113.41 Aligned_cols=70 Identities=37% Similarity=0.738 Sum_probs=66.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+||||+-|+.+++|.+|+..|+.||+|+.|.| ++|||||+|.++.+...|.+..+|+.|. |+.|.|.+..
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id--grri~VDvER 179 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID--GRRILVDVER 179 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec--CcEEEEEecc
Confidence 79999999999999999999999999999988 6899999999999999999999999885 9999998765
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2e-14 Score=119.82 Aligned_cols=121 Identities=29% Similarity=0.540 Sum_probs=99.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.+|||+|||..+|+++|.++|..||+|..|.| .+|+|||+|.++++|..|++.+++..|. |+.|.|.+..
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~--~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE--GRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC--CceeEeeccc
Confidence 78999999999999999999999999988877 5799999999999999999999999987 9999999964
Q ss_pred c----CCCcCC---------CCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE
Q 024366 75 G----ERGRHR---------DGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 75 ~----~~~~~~---------~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i 126 (268)
. ...... ..............+++.++ +..+...++...|..+|.+..+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeecccc-ccccchhHHHHhccccccceeeec
Confidence 2 111110 01111233455678899999 889999999999999999977766
No 60
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.58 E-value=4.5e-14 Score=117.62 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=132.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-eC---CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC--
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM-KS---GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER-- 77 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-~~---g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~-- 77 (268)
.++|+|+-.-+|.|-|.++|+.||.|..|.- .| -.|+|+|.+.+.|..|..+|+|..|...-+.|.|.+++-..
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 3678999999999999999999999987654 33 36899999999999999999999987555678888765220
Q ss_pred --------------CcCCC---------------------CCCC-------------cCCCCC--CcEEEEEccCCCCCC
Q 024366 78 --------------GRHRD---------------------GSKS-------------MANQRP--TKTLFVINFDPIRTR 107 (268)
Q Consensus 78 --------------~~~~~---------------------~~~~-------------~~~~~~--~~~l~v~~l~~~~~~ 107 (268)
..+.. +.+. .....+ +..|.|.||.++.++
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 00000 0000 000111 478899999888999
Q ss_pred HHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 108 ERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 108 ~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
.+.|..+|.-||.|..|.| ++.-|+|+|.+...|+.|++.|+|..+.|+.|+|.+++-..-
T Consensus 312 ~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred hhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 9999999999999999999 567999999999999999999999999999999999986543
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=1.2e-14 Score=124.21 Aligned_cols=75 Identities=28% Similarity=0.493 Sum_probs=67.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|+.|.| +++||||+|.+.++|++|++.||++.+.+.+++|.|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 368999999999999999999999999999888 358999999999999999999999998755689999988
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 743
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=103.14 Aligned_cols=71 Identities=27% Similarity=0.520 Sum_probs=67.1
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.|||+++.+.+|+++|.+.|..||+|++|.+ .+|||+|+|.+.++|++|+..|||..|. |+.|.|.|+-.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--~q~v~VDw~Fv 151 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL--GQNVSVDWCFV 151 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh--CCceeEEEEEe
Confidence 4899999999999999999999999999998 4899999999999999999999999987 99999999875
Q ss_pred C
Q 024366 76 E 76 (268)
Q Consensus 76 ~ 76 (268)
+
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 5
No 63
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.9e-14 Score=96.03 Aligned_cols=73 Identities=30% Similarity=0.505 Sum_probs=67.4
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++-|||.|||.++|.|++.++|..||+|..|+| .+|.|||.|++..+|.+|+..|+|..+. +..+.|-+...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~--~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD--NRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC--CceEEEEecCH
Confidence 3678999999999999999999999999999999 6899999999999999999999999885 88998887653
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.2e-13 Score=113.56 Aligned_cols=68 Identities=18% Similarity=0.490 Sum_probs=62.5
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.|||..+.++++++||+.+|+.||+|..|.+ ++||+||+|.+......|+..||-..++ |+.|.|..+
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG--GQyLRVGk~ 287 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQYLRVGKC 287 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc--cceEecccc
Confidence 6999999999999999999999999999999 6899999999999999999989877776 888888654
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=2.4e-14 Score=94.26 Aligned_cols=63 Identities=32% Similarity=0.655 Sum_probs=55.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--e-----CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--K-----SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~-----~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
|||+|||+++|+++|.++|+.||.|..+.+ . +++|||+|.++++|..|++.+++..+. |+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~--g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID--GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC--CEEcC
Confidence 799999999999999999999999999988 2 589999999999999999998888875 77763
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=5.4e-14 Score=99.93 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
.......|||.++ ...+++++|++.|..||+|++|.+ .+|||+|+|++.++|++|+..|||..+.|+.|.|
T Consensus 68 rSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 3445789999999 678999999999999999999988 6899999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+..+.+.
T Consensus 147 Dw~Fv~gp~ 155 (170)
T KOG0130|consen 147 DWCFVKGPE 155 (170)
T ss_pred EEEEecCCc
Confidence 999876643
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=109.47 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=65.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
.||||+||++.+|+++|++||+.||+|.+|.| ..++|||+|.++++|..|+ .|+|..|. ++.|.|......
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~--d~~I~It~~~~y 81 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV--DQRVCITRWGQY 81 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC--CceEEEEeCccc
Confidence 48999999999999999999999999999999 3589999999999999999 59999996 999999987654
No 68
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.51 E-value=2e-12 Score=106.78 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=135.0
Q ss_pred CccEEEcCCC--CCCCHHHHHHHHhcCCCeeEEEe-eC--CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFE--YETRQSELERLFSKYGRIERVDM-KS--GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp--~~~t~~~l~~~F~~~G~v~~i~i-~~--g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++.|.++=|. .-+|.+-|.++-...|+|..|.| .+ =.|+|||.+.+.|++|.++|||..|.-.=++|+|+|+++.
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 3455555554 45899999999999999999988 33 3899999999999999999999998755678999999865
Q ss_pred CCc----CCC-C------------------------------------------------------------------CC
Q 024366 77 RGR----HRD-G------------------------------------------------------------------SK 85 (268)
Q Consensus 77 ~~~----~~~-~------------------------------------------------------------------~~ 85 (268)
.-. ..+ + ..
T Consensus 200 rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a 279 (494)
T KOG1456|consen 200 RLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYA 279 (494)
T ss_pred eeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCC
Confidence 200 000 0 00
Q ss_pred CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 86 SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 86 ~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
......+...++|.+|+...++.+.|-++|-.||.|+.|.+ ..+.|+|++.+..+.+.|+..||+..+.|.+|.|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 00123456789999998888999999999999999999998 668999999999999999999999999999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
++..--
T Consensus 360 SkQ~~v 365 (494)
T KOG1456|consen 360 SKQNFV 365 (494)
T ss_pred cccccc
Confidence 876643
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=8.4e-14 Score=91.51 Aligned_cols=63 Identities=33% Similarity=0.675 Sum_probs=59.0
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 96 l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
|||.|| |..+++++|+++|+.||.|..+.+ .+++|||+|.+.++|++|++.|||..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 889999999999999999999888 356999999999999999999999999999874
No 70
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.4e-13 Score=114.58 Aligned_cols=156 Identities=20% Similarity=0.347 Sum_probs=114.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----------eCC---EEEEEEcCHHHHHHHHHhcCCCCccCCCceE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM----------KSG---FAFVYFEDDRDAADAIRGLDNIPFGYDRRRL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----------~~g---~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i 68 (268)
|++||||+||++++|++|...|..||.+.-=+- ++| |+|+.|+++..+...+.++... ...+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~-----~~~~ 333 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG-----EGNY 333 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc-----ccce
Confidence 689999999999999999999999998753211 467 9999999999999888766532 2223
Q ss_pred EEEEeccCCCcC---------CC---CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc-cCCCeEEEEE--------e
Q 024366 69 SVEWARGERGRH---------RD---GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI--------R 127 (268)
Q Consensus 69 ~v~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~-~~g~v~~~~i--------~ 127 (268)
.+..+....+.. .+ .........+.+||||++| |..++.++|..+|. .||.|..+-| +
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 332222221111 00 0112345667899999999 88999999999999 8999999888 7
Q ss_pred CCeEEEEeccHHHHHHHHHh----hCCCccCCcEEEEEEee
Q 024366 128 RNFAFVQFETQEEATKALES----TDRSKLVDRVISVEYAL 164 (268)
Q Consensus 128 ~~~afV~f~~~~~a~~A~~~----l~g~~~~g~~i~v~~a~ 164 (268)
+|-|=|+|.+.+.-.+||.+ |+..+|. +.|+|+-..
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPYv 452 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPYV 452 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEeccccc-eeeeeccee
Confidence 89999999999999999985 3333333 366665433
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.5e-14 Score=114.04 Aligned_cols=72 Identities=28% Similarity=0.526 Sum_probs=68.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+.|+|.|||+..-+-||+..|++||+|.+|.| +|||+||+|++.++|++|-++|||..++ |++|.|..+...
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE--GRkIEVn~ATar 174 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE--GRKIEVNNATAR 174 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee--ceEEEEeccchh
Confidence 68999999999999999999999999999988 7999999999999999999999999997 999999988754
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.5e-13 Score=89.20 Aligned_cols=65 Identities=45% Similarity=0.785 Sum_probs=59.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--e----CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--K----SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~----~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
+|||+|||..+++++|+++|.+||+|..+.+ . +++|||+|.+.++|..|++.+++..+. |+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~--~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG--GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC--CEEEee
Confidence 6999999999999999999999999999888 2 499999999999999999999998875 888776
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=8.7e-14 Score=108.22 Aligned_cols=70 Identities=31% Similarity=0.583 Sum_probs=61.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++||||||++.++.|+|+++|++||+|.+..| +|||+||+|.+.++|..|++..| ++ |+|++..|+.+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi-IdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI-IDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc-ccccccccchhh
Confidence 68999999999999999999999999988766 78999999999999999986433 33 579999888776
Q ss_pred c
Q 024366 75 G 75 (268)
Q Consensus 75 ~ 75 (268)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.3e-13 Score=106.30 Aligned_cols=72 Identities=39% Similarity=0.651 Sum_probs=66.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.||-|.||+.+++|++|++||..||.|..|.| ++|||||.|.+.++|++|+..|||.-+. ...|.|+|++
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd--~LILrvEwsk 267 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD--NLILRVEWSK 267 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc--eEEEEEEecC
Confidence 57999999999999999999999999998888 6899999999999999999999998764 7889999998
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 53
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.46 E-value=2.3e-13 Score=121.50 Aligned_cols=75 Identities=27% Similarity=0.589 Sum_probs=70.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
|+|||||+|+.++++.||.++|+.||+|+.|.| +++||||.+..-.+|.+||.+|++..+. ++.|+|.|+-.+.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~--~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA--DKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc--ceeeEEeeeccCCc
Confidence 699999999999999999999999999999998 8999999999999999999999988876 99999999986643
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.2e-13 Score=95.97 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+++|||+|| +..+++++|.++|+++|+|..|.+ +-|||||+|...++|..|+..++|+.++.+.|.+.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 345789999999 899999999999999999999988 66899999999999999999999999999999999
Q ss_pred Eeec
Q 024366 162 YALK 165 (268)
Q Consensus 162 ~a~~ 165 (268)
|...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8753
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.5e-13 Score=115.81 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=66.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCH--HHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDD--RDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~--~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.+||||||++.+|+++|..+|..||.|..|.| -+|||||+|.+. .++.+|+..|||..+. |..|+|+.+++
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK--GR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK--GGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec--CceeEEeeccH
Confidence 47999999999999999999999999999999 379999999987 6899999999999997 99999999874
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3e-13 Score=109.86 Aligned_cols=75 Identities=33% Similarity=0.534 Sum_probs=70.2
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
...+.|+|.|| |+...+.||+.+|.+||.|.+|.| .|||+||+|++.+||++|-++|||..|.|+.|+|.-|.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34679999999 999999999999999999999998 89999999999999999999999999999999999886
Q ss_pred cC
Q 024366 165 KD 166 (268)
Q Consensus 165 ~~ 166 (268)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 43
No 79
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-13 Score=105.65 Aligned_cols=74 Identities=31% Similarity=0.552 Sum_probs=70.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+|||||+|...+|+.-|...|-+||.|++|++ ++|||||+|...|+|.+|+..||+..+. |+.|.|.+++
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~--GrtirVN~Ak 88 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF--GRTIRVNLAK 88 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc--ceeEEEeecC
Confidence 69999999999999999999999999999999 5899999999999999999999999997 9999999998
Q ss_pred cCCC
Q 024366 75 GERG 78 (268)
Q Consensus 75 ~~~~ 78 (268)
+.+-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7643
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=114.35 Aligned_cols=76 Identities=25% Similarity=0.496 Sum_probs=71.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 80 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~ 80 (268)
+.|||.||+.++|+|.|+++|++||.|+.|+..+.||||.|.+.++|.+||+.+||+.|. |..|.|..+++..+..
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeld--G~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELD--GSPIEVTLAKPVDKKK 335 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceec--CceEEEEecCChhhhc
Confidence 579999999999999999999999999999999999999999999999999999999996 9999999999765443
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1e-12 Score=105.66 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=67.0
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
.++|||+|| +..+++++|+++|+.||.|..|.| .++||||+|.+.++|..||. |+|..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 889999999999999999999999 46899999999999999996 9999999999999998643
No 82
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=9e-14 Score=125.93 Aligned_cols=151 Identities=23% Similarity=0.375 Sum_probs=129.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||+..+++.+|+..|..+|.|..|.|. ..||||.|.+.+.+..|+..+.+..|.-+ .+.+.+..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~r~glG~ 449 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--THRIGLGQ 449 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC--cccccccc
Confidence 5799999999999999999999999999999982 35999999999999999999999988633 33333322
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCC--eEEEEeccHHHHHHHHHhhCCCc
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSK 152 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~--~afV~f~~~~~a~~A~~~l~g~~ 152 (268)
. ...+++.+++++| +.++....|..+|..||.|..|.+..| ||+|.|++...|++|+..|-|..
T Consensus 450 ~-------------kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 450 P-------------KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred c-------------ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCc
Confidence 1 3456889999999 789999999999999999999999554 99999999999999999999999
Q ss_pred cCC--cEEEEEEeecCCC
Q 024366 153 LVD--RVISVEYALKDDS 168 (268)
Q Consensus 153 ~~g--~~i~v~~a~~~~~ 168 (268)
|++ +.+.|.|+.....
T Consensus 516 ~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASPPGA 533 (975)
T ss_pred CCCCCcccccccccCCCC
Confidence 985 7799999876543
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.6e-12 Score=85.72 Aligned_cols=67 Identities=43% Similarity=0.800 Sum_probs=61.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+|+|+|||+.+++++|+++|+.||+|..+.+. .++|||+|.+.++|..|++.+++..+. +..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~--~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG--GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEeC
Confidence 58999999999999999999999999998882 689999999999999999999999875 88888764
No 84
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.7e-12 Score=87.19 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=69.5
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
.-+..|||.|| |+.++.+++-++|.+||+|.+|.| .+|.|||.|++..+|.+|++.|+|..+++..+.|-+-.+
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34678999999 999999999999999999999999 678999999999999999999999999999999988654
Q ss_pred C
Q 024366 166 D 166 (268)
Q Consensus 166 ~ 166 (268)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 85
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=1.1e-11 Score=104.52 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=64.2
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
.++|+|.|| |..+||+-|++-|..||.|..+.| -+..+.|.|.++++|+.|+..|+|..++|+.|.|.|.
T Consensus 536 a~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 378999999 999999999999999999999888 3345689999999999999999999999999999874
No 86
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.5e-12 Score=101.85 Aligned_cols=74 Identities=27% Similarity=0.523 Sum_probs=70.0
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..++|-|.|| +..+++.+|+++|.+||.|..|.| .+|||||.|.+.++|++||+.|||.-++.-.|.|+|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4578999999 899999999999999999999998 7899999999999999999999999999999999999
Q ss_pred ecC
Q 024366 164 LKD 166 (268)
Q Consensus 164 ~~~ 166 (268)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.1e-12 Score=84.34 Aligned_cols=62 Identities=44% Similarity=0.738 Sum_probs=56.5
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 7 VGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 7 V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
|+|||..+++++|+++|++||+|..+.+ ++++|||+|.+.++|..|++.|++..+. ++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~--~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD--GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC--CcEEEe
Confidence 6899999999999999999999999988 2579999999999999999999988875 888776
No 88
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=5.9e-14 Score=104.83 Aligned_cols=73 Identities=29% Similarity=0.596 Sum_probs=67.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
--|||||||..+||.||.-+|++||+|.+|.+ ++||||+.|.+..+...|+..|||..|. |+.|.|....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~--gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL--GRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec--ceeEEeeecc
Confidence 35999999999999999999999999999998 6899999999999999999999999997 9999999876
Q ss_pred cCC
Q 024366 75 GER 77 (268)
Q Consensus 75 ~~~ 77 (268)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 543
No 89
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3.2e-12 Score=80.12 Aligned_cols=53 Identities=42% Similarity=0.709 Sum_probs=48.3
Q ss_pred HHHHHhcCCCeeEEEee--C-CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 19 LERLFSKYGRIERVDMK--S-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 19 l~~~F~~~G~v~~i~i~--~-g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
|.++|++||+|..|.+. + ++|||+|.+.++|..|++.|||..+. |++|.|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~--g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN--GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET--TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEC
Confidence 68999999999999993 3 99999999999999999999999986 999999986
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=3.2e-12 Score=84.04 Aligned_cols=63 Identities=35% Similarity=0.676 Sum_probs=56.4
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 96 l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
|+|.|| |..+++++|.++|..||.|..+.+ .+++|||+|.+.++|..|++.+++..++|+.|.
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999888 247999999999999999999999999999874
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=7.4e-12 Score=78.48 Aligned_cols=53 Identities=34% Similarity=0.644 Sum_probs=48.8
Q ss_pred HHHhhccCCCeEEEEEe--C-CeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 111 IKRHFEPYGNVLHVRIR--R-NFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 111 l~~~f~~~g~v~~~~i~--~-~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
|.++|++||.|..+.+. . ++|||+|.+.++|..|+..|||..+.|+.|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999993 3 89999999999999999999999999999999986
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.9e-12 Score=99.70 Aligned_cols=78 Identities=29% Similarity=0.563 Sum_probs=72.3
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...++|||++| ..++++.-|...|-+||.|.+|.+ .++|+||+|+..++|.+||..||+.++.|++|.|.+
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34689999999 889999999999999999999998 678999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024366 163 ALKDDSE 169 (268)
Q Consensus 163 a~~~~~~ 169 (268)
|++.+-.
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9977643
No 93
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.30 E-value=3.3e-12 Score=102.29 Aligned_cols=74 Identities=36% Similarity=0.615 Sum_probs=70.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
.+++|+||||.+.||.+||+..|++||+|.+|.|-++|+||.|.-.++|..|+..|++..|. |+.|+|+.+...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~--gk~m~vq~stsr 150 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQ--GKRMHVQLSTSR 150 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccc--cceeeeeeeccc
Confidence 36899999999999999999999999999999999999999999999999999999999997 999999998765
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.8e-11 Score=97.00 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
...+|+|.|| +..+++++|+++|+.||.|..|.| ..++|||+|.++++|..|+. |+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 3579999999 789999999999999999999999 34799999999999999995 999999999999987653
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=1.2e-11 Score=105.80 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE----eCCeEEEEeccH--HHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQ--EEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~--~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
.....|||+|| ++.+++++|..+|..||.|..|.| .+|||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34679999999 899999999999999999999999 578999999987 78999999999999999999999987
Q ss_pred c
Q 024366 165 K 165 (268)
Q Consensus 165 ~ 165 (268)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.6e-11 Score=80.42 Aligned_cols=65 Identities=43% Similarity=0.706 Sum_probs=60.1
Q ss_pred EEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--e----CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R----RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 95 ~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
+|+|.|| |..+++++|+++|.+||.|..+.+ . .++|||+|.+.++|+.|++.+++..+.|..|.|
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4899999 889999999999999999999888 2 389999999999999999999999999999876
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=9.8e-12 Score=108.62 Aligned_cols=161 Identities=22% Similarity=0.414 Sum_probs=127.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcC-----------C-CeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKY-----------G-RIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRL 68 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~-----------G-~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i 68 (268)
..++|+++|+.++++.+..+|..- | .|..+.+ .+++|||+|.+.+.|..|+. +++..+. |..+
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~--g~~~ 252 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFE--GRPL 252 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhC--CCCc
Confidence 468999999999999999999753 2 4667777 68999999999999999984 7777775 7777
Q ss_pred EEEEeccCCCcCCCC------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eC
Q 024366 69 SVEWARGERGRHRDG------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RR 128 (268)
Q Consensus 69 ~v~~~~~~~~~~~~~------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~ 128 (268)
++.-.......+... ..........+.++|++| |...++.++.++...||.+....+ .+
T Consensus 253 ~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 253 KIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred eecccccccCCccchhhhccccccCCcccccCcccccchhhhccC-cCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 665433322111110 011122334578999999 899999999999999999877665 67
Q ss_pred CeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 129 NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 129 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
+|||.+|.++.....|++.|||..+.+..|.|+.|....
T Consensus 332 g~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 332 GFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 899999999999999999999999999999999987554
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=3.1e-11 Score=104.86 Aligned_cols=73 Identities=34% Similarity=0.643 Sum_probs=68.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.+|||||||+++++++|..+|...|.|.++++ .+||||++|.++++|..|++.|||..+. |++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~--gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN--GRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC--CceEEeeccc
Confidence 68999999999999999999999999999998 6899999999999999999999999997 9999999987
Q ss_pred cCC
Q 024366 75 GER 77 (268)
Q Consensus 75 ~~~ 77 (268)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 543
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.1e-10 Score=76.81 Aligned_cols=67 Identities=45% Similarity=0.718 Sum_probs=61.6
Q ss_pred EEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 95 ~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
+|+|.|| |..+++++|.++|+.+|.|..+.+. .++|||+|.+.++|..|+..+++..+.|..+.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999 7889999999999999999998882 58999999999999999999999999999998864
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4.5e-12 Score=97.55 Aligned_cols=137 Identities=22% Similarity=0.314 Sum_probs=108.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
|-+||||+||...++|+-|.++|-+-|+|..|.|. ..||||.|.++-.+.-|++.+||..+. +..|+|++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~--~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE--EDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc--cchhhccccc
Confidence 45899999999999999999999999999999993 249999999999999999999999987 7888887654
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHh
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~ 147 (268)
.....+ | -..++++-+...|+..|.+..+.+ .++++|+.+.-....-.|+..
T Consensus 86 G~shap--------------------l-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 86 GNSHAP--------------------L-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred CCCcch--------------------h-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhh
Confidence 321111 1 234566667778888888888777 456889988888888888888
Q ss_pred hCCCccCCcEEEE
Q 024366 148 TDRSKLVDRVISV 160 (268)
Q Consensus 148 l~g~~~~g~~i~v 160 (268)
+++....-..+.+
T Consensus 145 y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 145 YQGLELFQKKVTI 157 (267)
T ss_pred hcccCcCCCCccc
Confidence 7776655444443
No 101
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=5.7e-11 Score=97.49 Aligned_cols=73 Identities=25% Similarity=0.499 Sum_probs=66.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.+||||++|...++|.+|.++|.+||+|..|.+ .+++|||+|.+.++|+.|.+.+.+. +.|+|..|.|.|..+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK-LVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcce-eeecceEEEEEeCCC
Confidence 479999999999999999999999999999988 6789999999999999998877764 446799999999887
No 102
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.6e-11 Score=96.36 Aligned_cols=78 Identities=24% Similarity=0.464 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...+|.+.|||+.| ..-++++||+-+|+.||.|..|.| .-.||||+|++.+.+++|.-+|++..|+++.|+
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45678999999999 556888999999999999999998 234999999999999999999999999999999
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
|.|+.+-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998643
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1e-10 Score=76.24 Aligned_cols=63 Identities=37% Similarity=0.656 Sum_probs=56.8
Q ss_pred EEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 98 VINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 98 v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
|.|| |..+++++|+++|..||.|..+.+ .+++|||+|.+.++|..|+..|++..+.|+.|.|+
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4678 788999999999999999999888 24699999999999999999999999999998763
No 104
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=5e-11 Score=93.02 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=64.2
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
-++|||++| +..+..+.|+++|++||+|++..| .+||+||+|.+.+.|..|++.. +-.|+|++..+.+|.
T Consensus 12 ~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 468999999 999999999999999999988776 7899999999999999999964 478999999998876
Q ss_pred c
Q 024366 165 K 165 (268)
Q Consensus 165 ~ 165 (268)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2e-09 Score=92.41 Aligned_cols=155 Identities=21% Similarity=0.325 Sum_probs=109.2
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIER-VDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~-i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.|-+.+||+.||++||.+||+..-.|.+ |.+ +.|-|||+|.+.+.|++||.. |...|. .+-|.|..+..
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG--hRYIEvF~Ss~ 181 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG--HRYIEVFRSSR 181 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc--cceEEeehhHH
Confidence 5789999999999999999998876665 333 568999999999999999863 333343 56666654431
Q ss_pred CCC---------------------cCCC----------------------C--------------------------CCC
Q 024366 76 ERG---------------------RHRD----------------------G--------------------------SKS 86 (268)
Q Consensus 76 ~~~---------------------~~~~----------------------~--------------------------~~~ 86 (268)
... .... . ...
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 100 0000 0 000
Q ss_pred ------------cCCCCC-CcEEEEEccCCCCCCHHHHHHhhccCCCe-EEEEE-----eCCeEEEEeccHHHHHHHHHh
Q 024366 87 ------------MANQRP-TKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-----RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 87 ------------~~~~~~-~~~l~v~~l~~~~~~~~~l~~~f~~~g~v-~~~~i-----~~~~afV~f~~~~~a~~A~~~ 147 (268)
.....+ ...+++.+| |+..++.+|.++|+..-.+ ..|.| ..+-|+|+|.+.++|..|+.+
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGl-py~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGL-PYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCC-CccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhcc
Confidence 000111 268899999 8999999999999977655 34555 567999999999999999985
Q ss_pred hCCCccCCcEEEEEEe
Q 024366 148 TDRSKLVDRVISVEYA 163 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a 163 (268)
++..+..+-|.+-..
T Consensus 341 -d~anm~hrYVElFln 355 (510)
T KOG4211|consen 341 -DGANMGHRYVELFLN 355 (510)
T ss_pred -CCcccCcceeeeccc
Confidence 667777766665443
No 106
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=7.3e-12 Score=105.01 Aligned_cols=150 Identities=21% Similarity=0.340 Sum_probs=124.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKY--GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 80 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~--G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~ 80 (268)
.+||++||.+.++..+|..+|... +--..+.|..||+||.+.+..+|.+|++.++|+.- ..|+.+.++++.+++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~sv~kkqr- 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHSVPKKQR- 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhh-hcCceeeccchhhHHHH-
Confidence 369999999999999999999753 33345677899999999999999999999998863 25999999987765332
Q ss_pred CCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 81 RDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
++.+.|.|+ |....|+.|..++..||.|..|.. ..-..-|+|.+.+.+..||.+|+|..+..
T Consensus 80 ------------srk~Qirni-ppql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 80 ------------SRKIQIRNI-PPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred ------------hhhhhHhcC-CHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 456889999 778889999999999999988876 11234467888999999999999999999
Q ss_pred cEEEEEEeecCC
Q 024366 156 RVISVEYALKDD 167 (268)
Q Consensus 156 ~~i~v~~a~~~~ 167 (268)
..+.+.|-....
T Consensus 147 ~~~k~~YiPdeq 158 (584)
T KOG2193|consen 147 QHLKVGYIPDEQ 158 (584)
T ss_pred hhhhcccCchhh
Confidence 999999976554
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=9.6e-12 Score=93.10 Aligned_cols=76 Identities=22% Similarity=0.466 Sum_probs=70.1
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..+.-|||+|| |+.+++.||-.+|++||.|.+|.+ .+||||+.|++......|+..|||..|.|+.|.|.+
T Consensus 33 kdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34678999999 999999999999999999999998 678999999999999999999999999999999998
Q ss_pred eecCC
Q 024366 163 ALKDD 167 (268)
Q Consensus 163 a~~~~ 167 (268)
...-.
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 75443
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=6.2e-11 Score=102.94 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=106.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+.+|+|-|||..+++++|..+|+.||+|..|+. ..|.+||+|.+..+|+.|+++|++..+. |+.|+.........
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~--~~~~k~~~~~~~~~ 152 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIA--GKRIKRPGGARRAM 152 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhh--hhhhcCCCcccccc
Confidence 369999999999999999999999999999888 6899999999999999999999999987 77777222111100
Q ss_pred cCCC--------CCC---CcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHH
Q 024366 79 RHRD--------GSK---SMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKA 144 (268)
Q Consensus 79 ~~~~--------~~~---~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A 144 (268)
.... ..+ .....-+-..++.- | ....+..-+...+.-+|.+.. .. ....-|++|.+..++..+
T Consensus 153 ~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l-~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 153 GLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-L-SPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred hhcccchhhhhccchhhcCCCCCCcCCcceee-e-ccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 0000 000 00111111223222 7 445555556666777776665 32 333677888888888555
Q ss_pred HHhhCCCccCCcEEEEEEeec
Q 024366 145 LESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 145 ~~~l~g~~~~g~~i~v~~a~~ 165 (268)
...+ |..+.+....++++..
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccCC-ceecCCCCceEEecCC
Confidence 5543 6777777777777654
No 109
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=93.38 Aligned_cols=72 Identities=40% Similarity=0.650 Sum_probs=67.7
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
..+|||+|| +..+++++|.++|..||.|..+.+ .+|+|||+|.+.++|..|++.++|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 899999999999999999988777 56899999999999999999999999999999999976
Q ss_pred c
Q 024366 165 K 165 (268)
Q Consensus 165 ~ 165 (268)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=1.4e-10 Score=96.31 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=108.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC----CeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 5 IFVGNFEYETRQSELERLFSKYG----RIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G----~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
|-+.+||.++|+.|+.+||..-- -++.|.+ ..|-|||.|..+++|..||.. |...++ .+.|.+..+
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG--qRYIElFRS 240 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIG--QRYIELFRS 240 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHh--HHHHHHHHH
Confidence 56789999999999999997422 2334444 358999999999999999963 333332 333333222
Q ss_pred ccC------------CCcC---CC-----CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCC-eEE--EEE----
Q 024366 74 RGE------------RGRH---RD-----GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLH--VRI---- 126 (268)
Q Consensus 74 ~~~------------~~~~---~~-----~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~-v~~--~~i---- 126 (268)
... .-.. .. ............+|-+.+| |+.++.+||-++|..|.. |.. |.+
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 110 0000 00 0111122333678999999 999999999999998874 333 333
Q ss_pred ---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 127 ---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 127 ---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
+.|.|||+|.+.++|.+|..+.+.+.+..+.|+|--+.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 66899999999999999999999888888888887654
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.09 E-value=3.5e-10 Score=88.02 Aligned_cols=76 Identities=28% Similarity=0.529 Sum_probs=69.6
Q ss_pred CCCcEEEEEccCCCCCCHHHHHH----hhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKR----HFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~----~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
.+..+|||.|| +..+..++|+. +|++||.|.+|.. .+|.|||.|.+.+.|..|+.+|+|..+.|+.+.|+
T Consensus 7 ~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34559999999 88899988887 9999999999988 67899999999999999999999999999999999
Q ss_pred EeecCC
Q 024366 162 YALKDD 167 (268)
Q Consensus 162 ~a~~~~ 167 (268)
||..+.
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 998765
No 112
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=2.5e-10 Score=85.71 Aligned_cols=73 Identities=29% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
....+|||+|| +..++++-|.++|-+.|+|..+.+ .+|||||+|.+.++|+-|++.||..++.|++|.|..
T Consensus 7 nqd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34679999999 678999999999999999999998 578999999999999999999999999999999999
Q ss_pred ee
Q 024366 163 AL 164 (268)
Q Consensus 163 a~ 164 (268)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.06 E-value=3.6e-10 Score=93.91 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=122.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|++++..++.+.++..++..+|.+....+ ++++++|.|...+.+..|+.......+. +..+......
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~--~~~~~~dl~~ 166 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD--GNKGEKDLNT 166 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc--cccccCcccc
Confidence 57899999999999999999999997766655 6899999999999999999744333332 3333333333
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEE-EEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 75 GERGRHRDGSKSMANQRPTKTLF-VINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
......... .......+..+++ |.+| +..++.++|+..|..+|.|..+.+ .+++|+|.|.+...+..|+
T Consensus 167 ~~~~~~~n~-~~~~~~~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 167 RRGLRPKNK-LSRLSSGPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccch-hcccccCccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 222111111 1112233444555 9999 899999999999999999999988 5689999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
.. +...+.+.++.+.+......
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hc-ccCcccCcccccccCCCCcc
Confidence 97 88999999999988866543
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=7.8e-10 Score=72.54 Aligned_cols=53 Identities=32% Similarity=0.597 Sum_probs=47.0
Q ss_pred HHHHHHHHh----cCCCeeEEE-e----------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 16 QSELERLFS----KYGRIERVD-M----------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 16 ~~~l~~~F~----~~G~v~~i~-i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
+++|+++|. .||+|..|. | ++|+|||+|.+.++|.+|++.|||..+. |+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~--gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD--GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEe
Confidence 678999999 999999884 3 3789999999999999999999999986 888875
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=9e-10 Score=72.24 Aligned_cols=53 Identities=25% Similarity=0.523 Sum_probs=46.9
Q ss_pred HHHHHHhhc----cCCCeEEEE-E----------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 108 ERDIKRHFE----PYGNVLHVR-I----------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 108 ~~~l~~~f~----~~g~v~~~~-i----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
+++|+++|. .||.|..+. | .+|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999884 2 3679999999999999999999999999999876
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=1.5e-09 Score=94.49 Aligned_cols=74 Identities=27% Similarity=0.507 Sum_probs=70.5
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
..|||+|+ |+++++++|.++|+..|.|..+.+ .+||||++|.+.++|..|++.|||.++.|+.|.|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 999999999999999999999988 789999999999999999999999999999999999987
Q ss_pred CCC
Q 024366 166 DDS 168 (268)
Q Consensus 166 ~~~ 168 (268)
.+.
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=8.4e-11 Score=106.59 Aligned_cols=132 Identities=24% Similarity=0.305 Sum_probs=114.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++||.||++.+.+.+|...|..+|.+..+++ .+|+|||+|..++++.+|+....++.+ |
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g--------- 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G--------- 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---h---------
Confidence 36899999999999999999999998887766 479999999999999999975555544 2
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHh
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~ 147 (268)
...|+|.|+ |...|.++|+.++..+|.+..+.+ ++|.|+|.|.+..+|..++..
T Consensus 736 ------------------K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 ------------------KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred ------------------hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 245788888 889999999999999999998866 788999999999999999999
Q ss_pred hCCCccCCcEEEEEEeec
Q 024366 148 TDRSKLVDRVISVEYALK 165 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a~~ 165 (268)
+++..+....+.|..+.+
T Consensus 797 ~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 797 VDVAGKRENNGEVQVSNP 814 (881)
T ss_pred chhhhhhhcCccccccCC
Confidence 988888877777777655
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.97 E-value=1.6e-09 Score=97.38 Aligned_cols=76 Identities=26% Similarity=0.519 Sum_probs=71.2
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
.++||||++| +..+++.||.++|+.||.|..|.+ .++||||.+...++|.+|+.+|++..+.+..|+|.|+.....
T Consensus 420 ~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 420 CSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeeccc-cchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 4689999999 899999999999999999999988 899999999999999999999999999999999999986543
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=2.1e-09 Score=93.63 Aligned_cols=75 Identities=29% Similarity=0.517 Sum_probs=68.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+.+.|||.+|...+...+|++||++||+|...+| .+.|+||++.+.++|.+||+.|+.+.|. |+.|.|+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH--GrmISVEk 481 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH--GRMISVEK 481 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc--ceeeeeee
Confidence 3578999999999999999999999999988877 3679999999999999999999999997 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
++.+.
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 88654
No 120
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.95 E-value=1.4e-09 Score=96.93 Aligned_cols=72 Identities=24% Similarity=0.497 Sum_probs=66.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
|.+.|||+||++.++++.|...|..||+|..|+| .+.|+||-|.+-.+|++|++.|+|..+. +..|+
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~--~~e~K 250 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM--EYEMK 250 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee--eeeee
Confidence 4689999999999999999999999999999988 3689999999999999999999999987 88888
Q ss_pred EEEec
Q 024366 70 VEWAR 74 (268)
Q Consensus 70 v~~~~ 74 (268)
+.|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 88875
No 121
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.1e-09 Score=86.07 Aligned_cols=75 Identities=29% Similarity=0.564 Sum_probs=69.8
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCCC
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 169 (268)
..+||++| ++.+.+.+|+.+|..||.|..+.+..+|+||+|.+..+|..|+..||+..|.|..+.++|+......
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 46899999 8999999999999999999999999999999999999999999999999999999999999865433
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=4.6e-09 Score=80.60 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=64.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIFVGNFEYETRQSELERLFSKY-GRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~-G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
-+||..||..+-+.+|..+|.+| |.|..+++ ++|||||+|.+++.|+-|.+.||+..|. ++.|.|.+-.
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~--e~lL~c~vmp 128 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM--EHLLECHVMP 128 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh--hheeeeEEeC
Confidence 57899999999999999999998 78888888 5899999999999999999999999987 8999998876
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.6e-09 Score=89.34 Aligned_cols=72 Identities=28% Similarity=0.557 Sum_probs=65.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
..|||..|.+-+|.++|.-+|+.||+|..|.| +..||||+|.+.+++++|.-.|++..| +.+.|+|.|+.
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVDFSQ 317 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVDFSQ 317 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEeehhh
Confidence 57999999999999999999999999999988 347999999999999999988888877 59999999987
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
+-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 53
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=8.5e-09 Score=84.92 Aligned_cols=74 Identities=31% Similarity=0.518 Sum_probs=65.8
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhh-CCCccCCcEEEEEEeec
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 165 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~a~~ 165 (268)
....+|||++| ...+++.+|+++|.+||+|..+.+ .+++|||+|.+.+.|+.|.+++ +...|+|.+|.|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34579999999 669999999999999999999988 6789999999999999888765 55778999999999987
No 125
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.9e-09 Score=83.92 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=62.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+.|||..||.+..+.||.+.|-.||.|...++ +|.|+||.|.++.+|..|+.+|||..|+ =+.|+|....
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG--MKRLKVQLKR 363 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG--MKRLKVQLKR 363 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh--hhhhhhhhcC
Confidence 68999999999999999999999999988776 6899999999999999999999999986 4566666544
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.80 E-value=8.7e-09 Score=86.06 Aligned_cols=75 Identities=21% Similarity=0.462 Sum_probs=62.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||++||.++++++|++.|++||.|..+.+ .++|+||.|.+++.+.+++. ..-+.| +++.+.|..|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~--~gk~vevkrA 173 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDF--NGKKVEVKRA 173 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeee--cCceeeEeec
Confidence 368999999999999999999999999888766 58999999999999999874 333334 5999999988
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
.++...
T Consensus 174 ~pk~~~ 179 (311)
T KOG4205|consen 174 IPKEVM 179 (311)
T ss_pred cchhhc
Confidence 866443
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.2e-08 Score=80.45 Aligned_cols=71 Identities=27% Similarity=0.505 Sum_probs=63.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.+|+|.|||..|+++||+++|++||+++.+.| +.|.|-|.|...++|..|++.+|+..+ +|..|++.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc--CCceeeeEEecC
Confidence 57999999999999999999999998888777 569999999999999999999999666 599998887653
No 128
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.76 E-value=1.4e-08 Score=88.02 Aligned_cols=68 Identities=32% Similarity=0.542 Sum_probs=58.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--e------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--K------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.+|||.|||.++++++|+++|..||+|+...| . ..||||+|.+.+++..|+++- ++.+++++|.|+--
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEEec
Confidence 46999999999999999999999999988766 2 289999999999999999754 55556888888853
No 129
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.75 E-value=8.4e-08 Score=83.23 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=63.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--e------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
...|||.|| |.+++..+|+++|..||.|+...| . ..||||+|.+..+++.||++ +-..+++++|.|+..+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 356999999 899999999999999999988777 1 26999999999999999997 5788999999998876
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 543
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=7.5e-08 Score=66.42 Aligned_cols=72 Identities=17% Similarity=0.352 Sum_probs=57.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccC--CCceEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKY--GRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGY--DRRRLSV 70 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~--G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~--~g~~i~v 70 (268)
+||+|.|||...|.++|.+++... |...-+-+ +.|||||.|.+++.|....+.++|..+.. ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999763 44433333 57999999999999999999999998742 2455566
Q ss_pred EEec
Q 024366 71 EWAR 74 (268)
Q Consensus 71 ~~~~ 74 (268)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 131
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.73 E-value=5.3e-08 Score=63.99 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=48.8
Q ss_pred ccEEEcCCCCCCCHHHHH----HHHhcCC-CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 3 RPIFVGNFEYETRQSELE----RLFSKYG-RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~----~~F~~~G-~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
..|+|.|||.+.+...|+ +++..|| .|..| ..+.|+|.|.+++.|..|++.|+|..++ |.+|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVf--G~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVF--GNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SS--SS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccc--cceEEEEEcCCc
Confidence 469999999998876655 5666786 67666 6899999999999999999999999987 999999987543
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.73 E-value=8e-08 Score=74.67 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=67.9
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---------eCCeEEEEeccHHHHHHHHHhhCCCccC---CcEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLV---DRVIS 159 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---------~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~i~ 159 (268)
.-++|||.+| |.++...+|..+|..|-..+.+.+ .+-+|||+|.+.++|++|+..|||..|+ +.+|.
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999 999999999999999987766655 2248999999999999999999999997 89999
Q ss_pred EEEeecCCCCC
Q 024366 160 VEYALKDDSER 170 (268)
Q Consensus 160 v~~a~~~~~~~ 170 (268)
|++|+......
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99998776543
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=73.09 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccC-CCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPY-GNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~-g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.......++|..+ |....+.+|..+|.+| |.|..+.+ .+|||||+|++.+.|.-|.+.||+..|.++.|.
T Consensus 45 ~~~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 3445678899999 8899999999999998 67777777 678999999999999999999999999999999
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
+.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998766
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.65 E-value=5.7e-08 Score=84.95 Aligned_cols=76 Identities=36% Similarity=0.562 Sum_probs=67.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
....|||.+| ...+...||+++|++||.|+-..| .+-|+||++.+.++|.+||..||-++|.|+.|.|+.+
T Consensus 404 ~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3578999999 778888999999999999988777 3459999999999999999999999999999999998
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
+....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 75543
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.58 E-value=1.8e-07 Score=66.04 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=44.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCC--EEEEEEcCHHHHHHHHHhcCCC---CccCCCceEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSG--FAFVYFEDDRDAADAIRGLDNI---PFGYDRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g--~afV~f~~~~~a~~a~~~l~~~---~~~~~g~~i~v~~ 72 (268)
..|+|.+++..++-++|+++|++||+|..|.+.+| .|||-|.++++|+.|++.+... .+.+.+..+++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 35889999999999999999999999999999765 8999999999999999877655 4444455554443
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.4e-07 Score=74.51 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=68.8
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
...+|+|.|| ++.+.++||+++|..||.+..+.+ ..|.|-|.|...++|..|++.+||..++|..|.+....
T Consensus 82 ~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3478999999 899999999999999998888877 56899999999999999999999999999999999887
Q ss_pred cCCCC
Q 024366 165 KDDSE 169 (268)
Q Consensus 165 ~~~~~ 169 (268)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 65543
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=1.3e-07 Score=76.25 Aligned_cols=69 Identities=28% Similarity=0.478 Sum_probs=62.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+.+||+|+...+|.++|+..|+.||.|..+.| .+|||||+|.+.+.+..|+. |++..|. +..|.|.+..
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--~~~i~vt~~r 178 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--GPAIEVTLKR 178 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc--cccceeeeee
Confidence 68999999999999999999999999986666 57899999999999999998 9999987 8888888755
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=9.2e-08 Score=83.56 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=64.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...+..+|+|.|| +..++.++|..+|+.||+|..|.. ..+.+||+|.|..+|+.|+++|++.+|.|+.|.
T Consensus 71 ~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4556889999999 789999999999999999998776 778999999999999999999999999998887
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.50 E-value=1.3e-07 Score=74.88 Aligned_cols=150 Identities=15% Similarity=0.240 Sum_probs=102.7
Q ss_pred EEcCCCCCCCHHH-H--HHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 6 FVGNFEYETRQSE-L--ERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 6 ~V~nLp~~~t~~~-l--~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++++-..+..+- | ...|..+-.+...++ ..+++|+.|.....-.++...-+++.+. ..+|+ .+..
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~VR--~a~g 175 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG--KPPVR--LAAG 175 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc--Cccee--eccc
Confidence 4555555554444 2 556666554444433 3689999998877777776666666663 22333 3332
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHh
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~ 147 (268)
..+.. ............||.+.| ..+++++.|-..|.+|-......+ .+||+||.|.++.++..|+..
T Consensus 176 tswed---Psl~ew~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 176 TSWED---PSLAEWDEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred cccCC---cccccCccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 22221 112233445678999999 889999999999999876655444 678999999999999999999
Q ss_pred hCCCccCCcEEEEEEe
Q 024366 148 TDRSKLVDRVISVEYA 163 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a 163 (268)
|+|..++.+.|.+.-+
T Consensus 252 m~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKS 267 (290)
T ss_pred hcccccccchhHhhhh
Confidence 9999999988876543
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=2.6e-06 Score=71.42 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=96.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCC-----eeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGR-----IERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~-----v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
..|-..+||+..++.+|..+|+-... +..+.. ..|.|.|.|.++|.-..|++. +.+.+. ++.|.|.-+.
T Consensus 61 vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g--~ryievYka~ 137 (508)
T KOG1365|consen 61 VVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMG--TRYIEVYKAT 137 (508)
T ss_pred eEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhcc--CCceeeeccC
Confidence 34667899999999999999986432 222222 468999999999999989874 444444 7888887766
Q ss_pred cCCCcCCCCCCCc-----CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCe----EEEE-E------eCCeEEEEeccH
Q 024366 75 GERGRHRDGSKSM-----ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVR-I------RRNFAFVQFETQ 138 (268)
Q Consensus 75 ~~~~~~~~~~~~~-----~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v----~~~~-i------~~~~afV~f~~~ 138 (268)
.+..-.-.+.... .....-..|-+.+| |+.+++.|+.++|...-.| ..|. | ..|.|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 5432221111111 11122345678899 9999999999999733222 2222 2 567999999999
Q ss_pred HHHHHHHHh
Q 024366 139 EEATKALES 147 (268)
Q Consensus 139 ~~a~~A~~~ 147 (268)
++|+.|+.+
T Consensus 217 e~aq~aL~k 225 (508)
T KOG1365|consen 217 EDAQFALRK 225 (508)
T ss_pred HHHHHHHHH
Confidence 999999986
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=1.1e-06 Score=57.93 Aligned_cols=71 Identities=25% Similarity=0.400 Sum_probs=49.2
Q ss_pred cEEEEEccCCCCCCHHH----HHHhhccCC-CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 94 KTLFVINFDPIRTRERD----IKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~----l~~~f~~~g-~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..|+|.|| |....... |++++..+| .|..| ..+.|+|.|.+++.|..|.+.|+|..+.|..|.|.|.....
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 46899999 77766544 667777887 66665 68999999999999999999999999999999999985443
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.46 E-value=3e-07 Score=82.42 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=69.1
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 158 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i 158 (268)
.+.++.|||+|| +..++++.|-..|..||+|..+.| ...|+||.|.+..+|++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 345688999999 778999999999999999999998 45799999999999999999999999999999
Q ss_pred EEEEeecC
Q 024366 159 SVEYALKD 166 (268)
Q Consensus 159 ~v~~a~~~ 166 (268)
.+-|++.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99998543
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.1e-07 Score=73.61 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..+...+|+|.|+ ...++++-|.++|-+.|+|..|.|+ ..||||+|.+.....-|++.|||..+.+..+.+++
T Consensus 5 aae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3445789999999 7899999999999999999999993 23999999999999999999999999999888887
Q ss_pred ee
Q 024366 163 AL 164 (268)
Q Consensus 163 a~ 164 (268)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 43
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.39 E-value=3.1e-06 Score=68.24 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=67.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
.......+||+|+ ...++.++++..|+.||.|..+.| +++|+||+|.+.+.++.|+. |++..|.|..+.+
T Consensus 97 ~~~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3455789999999 678888889999999999986666 57899999999999999999 9999999999999
Q ss_pred EEeecC
Q 024366 161 EYALKD 166 (268)
Q Consensus 161 ~~a~~~ 166 (268)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998776
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.36 E-value=1.8e-06 Score=60.95 Aligned_cols=69 Identities=30% Similarity=0.417 Sum_probs=44.9
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCC--eEEEEeccHHHHHHHHHhhCCC-----ccCCcEEEEEEe
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRS-----KLVDRVISVEYA 163 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~--~afV~f~~~~~a~~A~~~l~g~-----~~~g~~i~v~~a 163 (268)
..|+|.++ ...++.++|+++|+.||.|..|.+..| .|||-|.+.+.|+.|++++... .+.+..+++..-
T Consensus 2 ~il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecC-CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 46888888 678889999999999999999999665 8999999999999999877533 566776666653
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.35 E-value=1e-06 Score=78.89 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=109.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+-+.+.+.++.+.++.++|...- |..+.| ..|.++|+|....++.+|++.-+-..+ .+.|.|..+...
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~---~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV---NRPFQTGPPGNL 389 (944)
T ss_pred eeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhh---hcceeecCCCcc
Confidence 34567889999999999997542 333333 368999999999999999875433333 677777655432
Q ss_pred CCcCCC----------------------------CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE-
Q 024366 77 RGRHRD----------------------------GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI- 126 (268)
Q Consensus 77 ~~~~~~----------------------------~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i- 126 (268)
...... +...........+|||..| |..+++.++.++|.....|++ |.|
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccC-CccccccchhhhhhhhhhhhheeEec
Confidence 211110 0111123345689999999 899999999999999888887 666
Q ss_pred ------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 127 ------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 127 ------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..+.|||+|..++++..|+..-+.+.++.+.|.|.-.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4568999999998888887765666666777777654
No 147
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.33 E-value=1.4e-06 Score=53.42 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=44.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee--CCEEEEEEcCHHHHHHHH
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK--SGFAFVYFEDDRDAADAI 53 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~--~g~afV~f~~~~~a~~a~ 53 (268)
++.|-|.+.++...+.-|. .|.+||+|.++.+. ...+||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4688999999877755554 88899999999996 889999999999999985
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=9.1e-06 Score=56.14 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=59.5
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccC--CCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccC----CcEEE
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLV----DRVIS 159 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~--g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~----g~~i~ 159 (268)
+||+|.|+ |...+.++|.+++... |....+.+ ..|||||.|.+++.|..-.+.++|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999 8999999998888643 44444444 5689999999999999999999998886 67888
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
|.||.-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 9888644
No 149
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.19 E-value=8.5e-06 Score=67.53 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=66.7
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--------EEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-------RRNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--------~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
..++.|||.|| |..+|.+++.++|+++|.|.. |.| .+|-|++.|.-.+.+..|++.|++..+.|
T Consensus 132 ~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567999999 899999999999999998753 334 67899999999999999999999999999
Q ss_pred cEEEEEEeecCC
Q 024366 156 RVISVEYALKDD 167 (268)
Q Consensus 156 ~~i~v~~a~~~~ 167 (268)
..|.|+-|+-..
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 999999987544
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.09 E-value=9.8e-07 Score=74.02 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
.+||+|.+|+..+...++.++|+.+|+|....+ ...+|.|+|........|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 479999999999999999999999999988877 45688899999999999986 6766663
No 151
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.03 E-value=1.5e-06 Score=69.20 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=46.8
Q ss_pred HHHHHHh-cCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 18 ELERLFS-KYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 18 ~l~~~F~-~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+|...|+ +||+|+.+.| ..|.+||.|..+++|++|++.||+-.+. |++|.++++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~--G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN--GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc--CCcceeeecC
Confidence 3333444 7999999987 4689999999999999999999999997 9999999865
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.01 E-value=5.3e-06 Score=73.25 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=63.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccC-CCceEEEEEec
Q 024366 1 MSRPIFVGNFEYETRQSELERLFS-KYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWAR 74 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~-~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~-~g~~i~v~~~~ 74 (268)
+|..|||.||-.-+|.-+|+.++. .+|.|..+|| -+..|||.|.+.++|.+..++|||..|.. +++.|.+.|..
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 367899999999999999999999 7888988888 57899999999999999999999998742 45666666654
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=6.7e-06 Score=68.60 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=63.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIER--------VDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRR 66 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~ 66 (268)
-||||-+||..+++++|.++|.+||.|+. |+| .|+-|.|.|.+...|++|+..+++..|. +.
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~--gn 144 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC--GN 144 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc--CC
Confidence 48999999999999999999999998852 333 6899999999999999999999999997 78
Q ss_pred eEEEEEeccC
Q 024366 67 RLSVEWARGE 76 (268)
Q Consensus 67 ~i~v~~~~~~ 76 (268)
+|+|.++...
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9998887654
No 154
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.92 E-value=1.1e-05 Score=64.10 Aligned_cols=69 Identities=26% Similarity=0.519 Sum_probs=58.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.||+|.|..+++.+.|-..|.+|-.....++ ++||+||.|.++.++..|+..|+|+.++ .+.|++.-+.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpiklRkS~ 268 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPIKLRKSE 268 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchhHhhhhh
Confidence 5999999999999999999999865544444 6899999999999999999999999986 6777665443
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.90 E-value=7.8e-06 Score=69.55 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=53.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---------------------eCCEEEEEEcCHHHHHHHHHhcCCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---------------------KSGFAFVYFEDDRDAADAIRGLDNIP 60 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---------------------~~g~afV~f~~~~~a~~a~~~l~~~~ 60 (268)
++||.+.|||.+-.-+.|.++|..||.|+.|+| .+-+|||+|...+.|.+|.+.|+...
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 689999999999999999999999999999998 14589999999999999999875443
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.88 E-value=3.7e-05 Score=68.08 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhc-cCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCcc---CCcEEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL---VDRVISVEY 162 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~-~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~i~v~~ 162 (268)
...+++.|||.|| --..|.-+|+.++. ..|.|....| .+..|||.|.+.++|.+...+|||..+ +.+.|.+.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5567899999999 67788999999999 5667777666 678999999999999999999999876 478999999
Q ss_pred eecC
Q 024366 163 ALKD 166 (268)
Q Consensus 163 a~~~ 166 (268)
+...
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8744
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=4.2e-05 Score=63.28 Aligned_cols=69 Identities=19% Similarity=0.423 Sum_probs=58.0
Q ss_pred cEEEcCCCCCCCHHHH------HHHHhcCCCeeEEEeeC---------CE--EEEEEcCHHHHHHHHHhcCCCCccCCCc
Q 024366 4 PIFVGNFEYETRQSEL------ERLFSKYGRIERVDMKS---------GF--AFVYFEDDRDAADAIRGLDNIPFGYDRR 66 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l------~~~F~~~G~v~~i~i~~---------g~--afV~f~~~~~a~~a~~~l~~~~~~~~g~ 66 (268)
-+||-+||+.+..|++ .++|.+||+|..|.|.+ +. .||+|.+.|+|..|+...+|..+. |+
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D--Gr 193 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD--GR 193 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--Cc
Confidence 4799999998877762 36999999999999832 22 399999999999999999999885 99
Q ss_pred eEEEEEec
Q 024366 67 RLSVEWAR 74 (268)
Q Consensus 67 ~i~v~~~~ 74 (268)
.|+..|-.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99988755
No 158
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.84 E-value=9.6e-05 Score=48.79 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=44.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDN 58 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~ 58 (268)
.||+ +|..+...||.++|..||.|.--+|....|||.+.+.+.|..|+..+..
T Consensus 12 Fhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 12 FHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 4555 9999999999999999999998899999999999999999999987764
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=6.6e-05 Score=64.09 Aligned_cols=65 Identities=25% Similarity=0.433 Sum_probs=55.1
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--e-------------------CCeEEEEeccHHHHHHHHHh
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R-------------------RNFAFVQFETQEEATKALES 147 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~-------------------~~~afV~f~~~~~a~~A~~~ 147 (268)
+..+..+|.+.|| |..-.-+.|.++|..+|.|..|.| + +-+|+|+|++.+.|.+|.+.
T Consensus 227 eel~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3457899999999 877778999999999999999998 1 23899999999999999998
Q ss_pred hCCCccC
Q 024366 148 TDRSKLV 154 (268)
Q Consensus 148 l~g~~~~ 154 (268)
|+.....
T Consensus 306 ~~~e~~w 312 (484)
T KOG1855|consen 306 LNPEQNW 312 (484)
T ss_pred hchhhhh
Confidence 8654433
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.79 E-value=6.4e-05 Score=62.85 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=67.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--------EEE--------eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--------~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
.....+|||.+| +..+++++|.++|.++|.|.. |.| +++-|.|.|++...|++||.-++++.+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 445678999999 889999999999999998743 233 678999999999999999999999999
Q ss_pred CCcEEEEEEeecCC
Q 024366 154 VDRVISVEYALKDD 167 (268)
Q Consensus 154 ~g~~i~v~~a~~~~ 167 (268)
.+..|+|.+|....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999987665
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=8.8e-05 Score=45.38 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=41.9
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--CCeEEEEeccHHHHHHHH
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKAL 145 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--~~~afV~f~~~~~a~~A~ 145 (268)
+.|-|.+. +... .+++...|..||+|..+.+. ....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf-~~~~-~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPDL-AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-CchH-HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 46889999 4444 46677799999999999996 789999999999999985
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=7.9e-05 Score=65.12 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=49.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHh
Q 024366 2 SRPIFVGNFEYETRQSELERLFS-KYGRIERVDM--------KSGFAFVYFEDDRDAADAIRG 55 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~-~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~ 55 (268)
.+|||||+||--+|.++|..+|. .||.|..+-| ++|.|=|+|.+..+-.+||++
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 48999999999999999999999 7999988777 689999999999999999873
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=1.1e-06 Score=80.53 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=105.5
Q ss_pred cEEEcCCCCCCCHH-HHHHHHhcCCCeeEEEeeC--------CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIFVGNFEYETRQS-ELERLFSKYGRIERVDMKS--------GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nLp~~~t~~-~l~~~F~~~G~v~~i~i~~--------g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.+++.|+.+..... .....|..+|.|+.|.+.+ .++++.+....+++.|.. ..+..+. ++.+.|..+.
T Consensus 573 e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a--~~~~av~~ad 649 (881)
T KOG0128|consen 573 EKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALA--NRSAAVGLAD 649 (881)
T ss_pred hhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccC--CccccCCCCC
Confidence 45677787766655 5778899999999999843 378899999999998875 5555554 6666666655
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHH
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALE 146 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~ 146 (268)
......... ..........++||.|| +..+.+.+|...|..+|.+..+.+ .+|+|+|+|..++++.+||.
T Consensus 650 ~~~~~~~~k-vs~n~~R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 650 AEEKEENFK-VSPNEIRDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred chhhhhccC-cCchHHHHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 443211111 11111123467899999 788999999999999998877666 57899999999999999998
Q ss_pred hhCCCccC
Q 024366 147 STDRSKLV 154 (268)
Q Consensus 147 ~l~g~~~~ 154 (268)
...+..++
T Consensus 728 f~d~~~~g 735 (881)
T KOG0128|consen 728 FRDSCFFG 735 (881)
T ss_pred hhhhhhhh
Confidence 65544443
No 164
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.74 E-value=6.3e-05 Score=69.69 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=69.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeC--CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~--g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
++.|||++|++.+....|...|..||+|..|.+.. -||||.|.+...|+.|++.|.|.+|+...+.|.|.++...-.
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 57899999999999999999999999999999955 599999999999999999999999987778899999875533
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.67 E-value=0.00014 Score=60.34 Aligned_cols=74 Identities=22% Similarity=0.431 Sum_probs=59.9
Q ss_pred CCCcEEEEEccCCCCCCHH---H--HHHhhccCCCeEEEEEeCC-----------eEEEEeccHHHHHHHHHhhCCCccC
Q 024366 91 RPTKTLFVINFDPIRTRER---D--IKRHFEPYGNVLHVRIRRN-----------FAFVQFETQEEATKALESTDRSKLV 154 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~---~--l~~~f~~~g~v~~~~i~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~ 154 (268)
...+-+||.+|+|.-..++ . -.++|.+||.|..|.|.+. -.||+|...++|..||.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999955444444 2 2689999999999999321 2499999999999999999999999
Q ss_pred CcEEEEEEee
Q 024366 155 DRVISVEYAL 164 (268)
Q Consensus 155 g~~i~v~~a~ 164 (268)
|+.|+..|..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999999865
No 166
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.65 E-value=0.00015 Score=65.54 Aligned_cols=68 Identities=22% Similarity=0.399 Sum_probs=58.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRI-ERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v-~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
++.|-|.|+|++++.+||.+||..|-.+ .+|.+ ..|-|.|.|++.++|..|...|+++.|. .++|++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~--nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR--NRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc--ceeEEEE
Confidence 3578899999999999999999999766 34555 5689999999999999999999999997 6777664
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.64 E-value=3.5e-05 Score=61.45 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=53.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee----------------C----CEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMK----------------S----GFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~----------------~----g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
.||+++||+.+...-|+++|++||+|-.|.+. . .-|+|+|.+...|..+...||+.+|+
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999888871 0 25789999999999999999999996
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.63 E-value=0.00035 Score=51.57 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEccCC----CCCCH----HHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDP----IRTRE----RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~----~~~~~----~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
..+|..+|.|.-+.+ ...-. .+|-+.|..||.|.=+++..+.-+|+|.+-+.|.+|+. |+|.+++|+.|+|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 556677777776621 11112 46788899999999999988999999999999999999 7999999999999
Q ss_pred EEeecC
Q 024366 161 EYALKD 166 (268)
Q Consensus 161 ~~a~~~ 166 (268)
....+.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 886554
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.44 E-value=0.00029 Score=57.38 Aligned_cols=58 Identities=33% Similarity=0.363 Sum_probs=50.1
Q ss_pred HHHHHHhhccCCCeEEEEE---------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 108 ERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 108 ~~~l~~~f~~~g~v~~~~i---------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
++++++.+.+||+|..|.| ..--.||+|+..++|.+|+-.|||..|+|+.+...|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 3667888999999999888 123689999999999999999999999999999888653
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.42 E-value=9.3e-05 Score=61.81 Aligned_cols=70 Identities=27% Similarity=0.495 Sum_probs=60.3
Q ss_pred cEE-EcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIF-VGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~-V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++| |+||+.++++++|+..|..+|.|..+++ .+|+|||+|.+...+..++.. +...+. +.++.+....
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~ 262 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG--GRPLRLEEDE 262 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc--CcccccccCC
Confidence 455 9999999999999999999999999988 479999999999999999875 555554 8888888776
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
..
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 54
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.41 E-value=0.00076 Score=46.93 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=50.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEE-------------e--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCce
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVD-------------M--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~-------------i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~ 67 (268)
+.|.|-+.|+. ....|.+.|++||+|.+.. + ..+...|+|.++.+|.+||. -||..|. +..-
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-g~~m 83 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS-GSLM 83 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET-TCEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc-CcEE
Confidence 46888899988 6778889999999998774 2 45799999999999999995 7898885 2234
Q ss_pred EEEEEec
Q 024366 68 LSVEWAR 74 (268)
Q Consensus 68 i~v~~~~ 74 (268)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.37 E-value=0.00075 Score=46.98 Aligned_cols=68 Identities=21% Similarity=0.422 Sum_probs=51.1
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEE-------------E--eCCeEEEEeccHHHHHHHHHhhCCCccCCcE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVR-------------I--RRNFAFVQFETQEEATKALESTDRSKLVDRV 157 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~-------------i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 157 (268)
...|.|.++ |.. ....|.+.|++||.|.... + ..+...|.|+++.+|++||.+ ||..+.|..
T Consensus 6 ~~wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 456889999 544 4678899999999998875 3 556899999999999999995 999999865
Q ss_pred E-EEEEe
Q 024366 158 I-SVEYA 163 (268)
Q Consensus 158 i-~v~~a 163 (268)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 36665
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.35 E-value=8.5e-05 Score=59.41 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=49.4
Q ss_pred HHHHHhhc-cCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 109 RDIKRHFE-PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 109 ~~l~~~f~-~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
++|...|+ +||.|..+.| ..|-++|.|...++|++|++.||+..+.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 9999999877 567899999999999999999999999999999998763
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00083 Score=59.49 Aligned_cols=71 Identities=17% Similarity=0.343 Sum_probs=56.6
Q ss_pred CCCcEEEEEccCCCCCC------HHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccC-Cc
Q 024366 91 RPTKTLFVINFDPIRTR------ERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLV-DR 156 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~------~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~-g~ 156 (268)
.-..+|+|.|+ |.--. ...|..+|+++|+|..+.+ .+||.|++|+++.+|+.|++.|||..++ .+
T Consensus 56 g~D~vVvv~g~-PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGA-PVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCC-cccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34568888888 52211 2446788999999999998 4789999999999999999999999887 67
Q ss_pred EEEEEE
Q 024366 157 VISVEY 162 (268)
Q Consensus 157 ~i~v~~ 162 (268)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777654
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.32 E-value=0.0016 Score=40.83 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=44.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcC----CCeeEEEeeCCEEEEEEcCHHHHHHHHHhc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKY----GRIERVDMKSGFAFVYFEDDRDAADAIRGL 56 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~----G~v~~i~i~~g~afV~f~~~~~a~~a~~~l 56 (268)
.+|+|.|+. +++.++|+.+|..| ++..==+|.-..|-|.|.+.+.|..||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 479999994 58999999999999 655444568888999999999999999764
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.29 E-value=0.0012 Score=48.79 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 18 ELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 18 ~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+|.+.|..||+|.=|++..+.-+|+|.+-+.|.+|+. |+|..+. |+.|+|....+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~--g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVN--GRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEET--TEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEEC--CEEEEEEeCCc
Confidence 6778889999999999988999999999999999996 9999986 99999987654
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.0014 Score=52.63 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-
Q 024366 48 DAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI- 126 (268)
Q Consensus 48 ~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i- 126 (268)
-|..|...|.+.... ++.+.|-|+. ...|+|.|| ...++.+.|.+.|..||+|....+
T Consensus 6 ~ae~ak~eLd~~~~~--~~~lr~rfa~------------------~a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~ 64 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPK--GRSLRVRFAM------------------HAELYVVNL-MQGASNDLLEQAFRRFGPIERAVAK 64 (275)
T ss_pred HHHHHHHhcCCCCCC--CCceEEEeec------------------cceEEEEec-chhhhhHHHHHhhhhcCccchheee
Confidence 355666678999887 9999999987 368999999 677888999999999999866443
Q ss_pred ------eCCeEEEEeccHHHHHHHHHhhCC----CccCCcEEEEEEe
Q 024366 127 ------RRNFAFVQFETQEEATKALESTDR----SKLVDRVISVEYA 163 (268)
Q Consensus 127 ------~~~~afV~f~~~~~a~~A~~~l~g----~~~~g~~i~v~~a 163 (268)
..+-++|+|...-.|.+|+..+.- .+..+..+.|.-.
T Consensus 65 vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 65 VDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 456899999999999999987742 2334555555443
No 178
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.19 E-value=0.00035 Score=58.26 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=54.7
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 4 PIFVGNFEYETRQSELERLFSKYG--RIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G--~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.+|||||-|.+|++||.+.+...| .+.++++ +||||+|...+..++++.++.|..+.|. |+.-.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH--GQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH--GQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec--CCCCeeec
Confidence 489999999999999999998776 3444554 6899999999999999999999888886 55544443
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0033 Score=39.43 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=43.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccC----CCeEEEEEeCCeEEEEeccHHHHHHHHHhh
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRIRRNFAFVQFETQEEATKALEST 148 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~----g~v~~~~i~~~~afV~f~~~~~a~~A~~~l 148 (268)
...|+|.|+ ..++.+||+.+|..| ++..-=.|...-|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 457999999 368889999999998 443323337778999999999999999865
No 180
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0018 Score=57.45 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=55.4
Q ss_pred ccEEEcCCCCC--CCHH----HHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 3 RPIFVGNFEYE--TRQS----ELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 3 ~tl~V~nLp~~--~t~~----~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
..|+|.|+|.- ...+ -|.++|+++|+|.++.+ .+|+.|++|.++.+|+.|++.|||..|. ..++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-knHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD-KNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec-ccceEE
Confidence 45889999843 2233 35568999999999888 4899999999999999999999999884 356666
Q ss_pred EEEec
Q 024366 70 VEWAR 74 (268)
Q Consensus 70 v~~~~ 74 (268)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65433
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.11 E-value=0.00038 Score=55.67 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=57.1
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe------------C--------CeEEEEeccHHHHHHHHHhhCCC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------------R--------NFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~------------~--------~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
....||+.++ |..+....|+++|..||.|-.|.+. + .-++|+|.....|..+...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999 7789999999999999999999981 0 14899999999999999999999
Q ss_pred ccCCcE
Q 024366 152 KLVDRV 157 (268)
Q Consensus 152 ~~~g~~ 157 (268)
.|+|..
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999853
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.98 E-value=0.0031 Score=46.12 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=55.0
Q ss_pred ccEEEcCCCCCCC-HHHH---HHHHhcCCCeeEEEe-eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETR-QSEL---ERLFSKYGRIERVDM-KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t-~~~l---~~~F~~~G~v~~i~i-~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
-||.|.-|..++. .+|| ...++.||+|+.|.+ -+..|.|.|.+..+|..|+.+++.... |..+++.|-.
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~p---gtm~qCsWqq 160 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRAP---GTMFQCSWQQ 160 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCCC---CceEEeeccc
Confidence 3788888877764 3444 455678999999988 678999999999999999999887544 7888888754
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.88 E-value=0.0082 Score=39.79 Aligned_cols=54 Identities=22% Similarity=0.469 Sum_probs=44.2
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
...+|. + |......||.++|+.||.|.--.|...-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-F-PkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-F-PKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE----TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-C-chHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhc
Confidence 445555 8 78899999999999999998888899999999999999999988775
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.85 E-value=0.0015 Score=57.76 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=54.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhc--CCCeeEEEe-eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSK--YGRIERVDM-KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~--~G~v~~i~i-~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
+.|+|..||..+.+|+|+.||.. |-++.+|.+ ...-.||+|++..||..|.+.|....-.|.|++|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 46889999999999999999974 889999998 56778999999999999998775443223355544
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.85 E-value=0.003 Score=51.62 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCeeEEEee---------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 16 QSELERLFSKYGRIERVDMK---------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 16 ~~~l~~~F~~~G~v~~i~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++++++-.++||.|..|.|. .--.||+|...++|.+|+-.|||..|+ |+.+...|.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG--Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG--GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec--ceeeeheecc
Confidence 56677788899999998881 235799999999999999999999997 8888777654
No 186
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.68 E-value=0.082 Score=43.59 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=95.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--e-------------CCEEEEEEcCHHHHHHHH----HhcCCCCc
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--K-------------SGFAFVYFEDDRDAADAI----RGLDNIPF 61 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~-------------~g~afV~f~~~~~a~~a~----~~l~~~~~ 61 (268)
|+|.|.+.||..+++--.+...|.+||+|+.|.+ . .....+.|-+.+.|.... +.|....-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999998 1 257899999999887654 33332221
Q ss_pred cCCCceEEEEEeccCCCc------CCCCC---------CCcCCCCCCcEEEEEccCCCCCCHHHHHH---hhccCC----
Q 024366 62 GYDRRRLSVEWARGERGR------HRDGS---------KSMANQRPTKTLFVINFDPIRTRERDIKR---HFEPYG---- 119 (268)
Q Consensus 62 ~~~g~~i~v~~~~~~~~~------~~~~~---------~~~~~~~~~~~l~v~~l~~~~~~~~~l~~---~f~~~g---- 119 (268)
......|.+.+..-.-.. ++.+. ........++.|+|.--++ ...++-+.+ ++..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~-~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDP-VDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCc-cchhHHHHHhhhhhccCCCceE
Confidence 223666777765521111 11111 0112234466777765522 222322332 222333
Q ss_pred CeEEEEE----------eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 120 NVLHVRI----------RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 120 ~v~~~~i----------~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
.|+.|.+ ++.||.+.|-+...|.+.++.|...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 2455555 6789999999999999999987643
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.47 E-value=0.028 Score=41.25 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=56.1
Q ss_pred CCCCCCcEEEEEccCCCCCC-HHH---HHHhhccCCCeEEEEE-eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTR-ERD---IKRHFEPYGNVLHVRI-RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~-~~~---l~~~f~~~g~v~~~~i-~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...+|..+|.|.=| ..++. .+| +...++.||+|..|.+ .+.-|.|.|.+...|..|+.+++. ...|.-+...|
T Consensus 81 ~kepPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 35677888888776 33332 344 4556779999999988 788999999999999999999875 55666666666
Q ss_pred e
Q 024366 163 A 163 (268)
Q Consensus 163 a 163 (268)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 188
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.0027 Score=50.94 Aligned_cols=72 Identities=26% Similarity=0.313 Sum_probs=56.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCc--cCCCceEEEE
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPF--GYDRRRLSVE 71 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~--~~~g~~i~v~ 71 (268)
|...|||.||+..+..+.|.+-|..||+|....+ ..+-++|+|...-.|.+|+..+...-| ...+.+.-|.
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 3467999999999999999999999999965333 467899999999999999988743333 2335555554
Q ss_pred E
Q 024366 72 W 72 (268)
Q Consensus 72 ~ 72 (268)
.
T Consensus 110 P 110 (275)
T KOG0115|consen 110 P 110 (275)
T ss_pred h
Confidence 4
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.35 E-value=0.0032 Score=54.76 Aligned_cols=60 Identities=23% Similarity=0.394 Sum_probs=52.4
Q ss_pred CCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 105 RTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 105 ~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
.-+-++|...|.+||.|..|.+ ....|.|+|.+..+|-.|.. .++..|+++.|+|-|-..
T Consensus 384 lnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 384 LNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred CchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3445889999999999999998 44689999999999988877 589999999999999876
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.32 E-value=0.0028 Score=49.18 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=50.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEE--e--------eCCEEEEEEcCHHHHHHHHHhcCCCCcc---CCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSK-YGRI---ERVD--M--------KSGFAFVYFEDDRDAADAIRGLDNIPFG---YDR 65 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~-~G~v---~~i~--i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~---~~g 65 (268)
.+|.|.+||+++|++++.+.+.. ++.- ..+. . .-.-|||.|.+.+++......++|..|. ++-
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 47999999999999999997776 6655 3443 1 1247999999999999999999998773 111
Q ss_pred ceEEEEEecc
Q 024366 66 RRLSVEWARG 75 (268)
Q Consensus 66 ~~i~v~~~~~ 75 (268)
....|++|.-
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 3455666654
No 191
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.20 E-value=0.0039 Score=52.17 Aligned_cols=69 Identities=12% Similarity=0.232 Sum_probs=56.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCC--CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g--~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..++||+|| -.+++++||-+.+...| .+.++++ .+|||+|...+....++.++.|-.++|.|+.-.|.-
T Consensus 80 k~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 458999999 78999999999888766 4455554 789999999999999999999988889887655543
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.17 E-value=0.03 Score=39.77 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=43.5
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 4 PIFVGNFEYETRQSELERLFSKYG-RIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
.+.+...|.-++.++|..+.+.+- .|..++| ++-.++++|.+.++|....+.+||+.|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444455566667766666653 5667777 3458999999999999999999999984
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.14 E-value=0.0037 Score=58.04 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=63.9
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+.++.|.+-+++-.-|..++.+||.|.+++. .-.+|.|+|...+.|..|+.+|+|+.+...|.+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3456677778888999999999999999998 457999999999999999999999998777999999988743
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.018 Score=51.28 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=51.3
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhcc--CCCeEEEEE-eCCeEEEEeccHHHHHHHHHhhCC--CccCCcEEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEP--YGNVLHVRI-RRNFAFVQFETQEEATKALESTDR--SKLVDRVIS 159 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~--~g~v~~~~i-~~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~ 159 (268)
.+.|++.-| +..+-.++++.+|.. +-.++.|.+ ...-=||+|++..||+.|.+.|.. ++|.|+.|.
T Consensus 175 RcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 175 RCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 566778889 888889999999984 678888888 455678999999999999987742 334454443
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.93 E-value=0.22 Score=35.38 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=51.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccC---CcEEEEEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLV---DRVISVEY 162 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~i~v~~ 162 (268)
...|.+-.++|..++.++|..+.+.+- .|..+.| .+-.++++|.+.++|.+-...+||+.++ ...++|-|
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 344444455477777788877777665 5566777 2237889999999999999999999876 45565555
Q ss_pred ee
Q 024366 163 AL 164 (268)
Q Consensus 163 a~ 164 (268)
..
T Consensus 92 V~ 93 (110)
T PF07576_consen 92 VK 93 (110)
T ss_pred EE
Confidence 43
No 196
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.93 E-value=0.0097 Score=51.18 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=60.7
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccC--CCeEEEEEeCCeEEEEeccHHHHHHHHHhhCC-CccCCcEEEEEEeecCC
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDR-SKLVDRVISVEYALKDD 167 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~--g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~i~v~~a~~~~ 167 (268)
+.||++|| ...++..||..+|... +.-..+-+..+|+||.+.+..-|.+|++.++| .++.|..+.+.+..++.
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 46899999 6789999999999854 23344556889999999999999999999998 55789999999887654
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.90 E-value=0.0054 Score=53.43 Aligned_cols=70 Identities=20% Similarity=0.390 Sum_probs=56.9
Q ss_pred cEEEcCCCCCC-CHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 4 PIFVGNFEYET-RQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 4 tl~V~nLp~~~-t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+|-+.-+|..+ |-++|...|.+||+|.+|++ +--.|.|+|.+..+|-.|. +.++..|. ++.|+|.|.+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avln--nr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLN--NRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceec--CceeEEEEecCC
Confidence 44455555554 57899999999999999999 4468999999999997776 47888886 999999998864
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.61 E-value=0.046 Score=42.64 Aligned_cols=60 Identities=28% Similarity=0.309 Sum_probs=43.5
Q ss_pred CHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcC--CCCccCCCceEEEEEeccC
Q 024366 15 RQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 15 t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~--~~~~~~~g~~i~v~~~~~~ 76 (268)
..+.|+++|..|+.+..+.+ +=+=..|.|.+.++|..|...|+ +..+. |..+.|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~--g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFN--GKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEET--TEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccC--CCceEEEEcccc
Confidence 45889999999998887776 33568899999999999999999 77776 889999988533
No 199
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.58 E-value=0.29 Score=45.96 Aligned_cols=61 Identities=8% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCCCHHHHHHhhccCCCe-----EEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 104 IRTRERDIKRHFEPYGNV-----LHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g~v-----~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
..++..+|..++..-+.| -.|.|...|.||+.. ...|...+..|++..+.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 567888888888776655 456778899999985 4558888999999999999999998853
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.55 E-value=0.078 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 13 ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
.++.++|+..|..|+ ...|...+.--||.|.+..+|+++..+.++..+.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEE
Confidence 478999999999997 5677777777789999999999999999999875
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.53 E-value=0.089 Score=34.49 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=40.8
Q ss_pred cEEEcCCC--CCCCHHHHHHHHhcCCC-----eeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 4 PIFVGNFE--YETRQSELERLFSKYGR-----IERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 4 tl~V~nLp--~~~t~~~l~~~F~~~G~-----v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+||| |+- ..++..+|..++...+. |-.|.|...|+||+.... .|..++..|++..+. |++|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~--gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIK--GKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SS--S----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCC--CeeEEEEEC
Confidence 4555 343 45889999999987644 557888999999999655 788899999999987 999998864
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.50 E-value=0.026 Score=38.21 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=48.1
Q ss_pred EEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 39 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 39 afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
|+|+|.+++-|...++ +....+.+++..+.|....-..... ..-.........+|.|.|| |....+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~--~k~qv~~~vs~rtVlvsgi-p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHL--QKFQVFSGVSKRTVLVSGI-PDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCc--eEEEEEEcccCCEEEEeCC-CCCCChhhheeeEE
Confidence 6899999999999986 5555555556666655433211100 0001123345688999999 77899999998765
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.44 E-value=0.097 Score=34.31 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCCCHHHHHHhhccCC-----CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 104 IRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g-----~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..++..+|..++...+ .|-.|.|...|+||+-.. +.|..++..|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677888888887665 456788899999999854 4788999999999999999999865
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.21 E-value=0.12 Score=32.90 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 103 PIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 103 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...++-+||+..+..|+. ..|...+.--||.|.+..+|+++....+|..+.+..|.+
T Consensus 9 ~~~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 9 VHGVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 346778999999999964 445555555689999999999999999999988877765
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.059 Score=44.51 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=50.6
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVI 158 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i 158 (268)
..-|-|.+++|.. ..-|-.+|.+||.|++... .-++-+|.|.+.-+|++||.+ ||+.|+|..+
T Consensus 197 D~WVTVfGFppg~--~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ--VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc--hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 4567788884433 3567889999999998777 445899999999999999995 8999987655
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.13 E-value=0.052 Score=42.36 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=45.5
Q ss_pred CHHHHHHhhccCCCeEEEEEeC--CeEEEEeccHHHHHHHHHhhC--CCccCCcEEEEEEeecC
Q 024366 107 RERDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTD--RSKLVDRVISVEYALKD 166 (268)
Q Consensus 107 ~~~~l~~~f~~~g~v~~~~i~~--~~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~a~~~ 166 (268)
..+.|+++|..++.+..+.+.+ +-..|.|.+.++|..|...|+ +..+.|..+.+-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999888877744 468999999999999999999 99999999999998543
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.03 E-value=0.053 Score=47.20 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=53.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
++.|+|-.+|..+|.-||..|...+- .|.+|+| .+-.++|+|.+.++|..+.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 56899999999999999999998764 5788888 3458999999999999999999999984
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.51 E-value=0.013 Score=48.97 Aligned_cols=69 Identities=17% Similarity=0.380 Sum_probs=53.6
Q ss_pred cEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEeeC-----------CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 4 PIFVGNFEYETRQSELE---RLFSKYGRIERVDMKS-----------GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~---~~F~~~G~v~~i~i~~-----------g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
-+||-+|+..+..+.+. +.|.+||.|..|.+.+ .-+||+|...++|..|+...+|..+- |+.|+
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d--g~~lk 156 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD--GRALK 156 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh--hhhhH
Confidence 46788888877655554 4889999999998833 25899999999999999999998874 76666
Q ss_pred EEEec
Q 024366 70 VEWAR 74 (268)
Q Consensus 70 v~~~~ 74 (268)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 65544
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.44 E-value=0.024 Score=51.50 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=57.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.-+|||+||...+..+-++.+++.||-|..+..-+ |+|.+|..+..+..|+..++...+. ++.+.+..
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~--~~kl~~~~ 107 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNID--DQKLIENV 107 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCC--cchhhccc
Confidence 45899999999999999999999999998776644 9999999999999999887777664 66665544
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=94.12 E-value=0.049 Score=41.10 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=73.9
Q ss_pred EEEcCCC--CCCCHHHHHHHHhc----CCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 5 IFVGNFE--YETRQSELERLFSK----YGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 5 l~V~nLp--~~~t~~~l~~~F~~----~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
..|+.+. ...+-..|.+.+.. .|.+.-..+..++..+.|.+++++..++. +.++.+++..|.++.-.+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe---cccccccccchhhhhhccccc
Confidence 3455552 33556666666544 45566666689999999999999888864 444444566666664442211
Q ss_pred cCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE
Q 024366 79 RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i 126 (268)
.. .........-|.|.|||....+++-|+.+.+.+|.+..+..
T Consensus 95 ~~-----~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 95 PS-----EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred cc-----ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 10 01111223457788995566788889999999999988876
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=0.29 Score=40.60 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=50.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
|-|-++|+.- ..-|..+|++||+|.+... +-++-+|.|...-+|.+||. .+|+.|. ...-|-|..+..+
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~-g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIID-GDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeec-cceEEeeeecCCH
Confidence 4455666543 4567789999999988777 34689999999999999996 7888875 2344456665544
No 212
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.42 E-value=0.23 Score=38.60 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=49.7
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhcc-CCCe---EEEE--E--------eCCeEEEEeccHHHHHHHHHhhCCCccCC--
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEP-YGNV---LHVR--I--------RRNFAFVQFETQEEATKALESTDRSKLVD-- 155 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~-~g~v---~~~~--i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g-- 155 (268)
....|.|.+| |..++++++.+.+.. ++.. ..+. + .-.-|||.|.+.+++..-+..++|..|-+
T Consensus 6 ~~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3568999999 789999999997776 5554 2333 1 11279999999999999999999977642
Q ss_pred ---cEEEEEEeecCC
Q 024366 156 ---RVISVEYALKDD 167 (268)
Q Consensus 156 ---~~i~v~~a~~~~ 167 (268)
....|++|.-..
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 456677776543
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.27 E-value=0.031 Score=46.84 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=56.0
Q ss_pred CcEEEEEccCCCCCCHHHHH--HhhccCCCeEEEEEeCC-----------eEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 93 TKTLFVINFDPIRTRERDIK--RHFEPYGNVLHVRIRRN-----------FAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~--~~f~~~g~v~~~~i~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.+-+||.+|++....+..|+ +.|.+||.|..|.+.++ -++|+|...++|..||...+|..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 35677888844444444443 57889999999888331 489999999999999999999999999877
Q ss_pred EEEeec
Q 024366 160 VEYALK 165 (268)
Q Consensus 160 v~~a~~ 165 (268)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 776553
No 214
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=93.05 E-value=0.11 Score=39.39 Aligned_cols=6 Identities=67% Similarity=0.606 Sum_probs=2.6
Q ss_pred CCCCCC
Q 024366 259 SRSPVR 264 (268)
Q Consensus 259 srs~~~ 264 (268)
|+|+.+
T Consensus 102 SRS~~R 107 (182)
T PF06495_consen 102 SRSRHR 107 (182)
T ss_pred ccCccc
Confidence 444443
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.96 E-value=0.092 Score=47.91 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...++..++||+|+ ...+..+-++.+...+|-|..+...+ |+|..|..+..+..|+..++-..++|..+.+.-
T Consensus 35 ~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred cCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 35567889999999 78888888999999999887776544 999999999999999999988888887766554
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.87 E-value=0.069 Score=50.06 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=54.0
Q ss_pred CCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCcc--CCcEEEEEEeecCC
Q 024366 104 IRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL--VDRVISVEYALKDD 167 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~i~v~~a~~~~ 167 (268)
...+-.-|..+|..||.|..+.. .-+.|.|+|...+.|..|+++|+|.++ .|...+|.+|+.-.
T Consensus 308 v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 308 VNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred ccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455678899999999999887 456899999999999999999999886 48899999987554
No 217
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.12 E-value=0.2 Score=42.03 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=3.7
Q ss_pred CCHHHHHHh
Q 024366 106 TRERDIKRH 114 (268)
Q Consensus 106 ~~~~~l~~~ 114 (268)
+++.+|.++
T Consensus 213 ~~k~eid~i 221 (367)
T KOG0835|consen 213 TTKREIDEI 221 (367)
T ss_pred CcHHHHHHH
Confidence 344444433
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.83 E-value=0.6 Score=40.93 Aligned_cols=62 Identities=18% Similarity=0.370 Sum_probs=53.2
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
+..|+|-.+ |..++-.||-.|+..+- .|.++.| .+-.++|.|.+..+|....+.+||..|+.
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 789999999 88999999999998765 6777877 22368899999999999999999999863
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=91.55 E-value=0.26 Score=37.77 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=54.6
Q ss_pred CccEEEcCCCCCCC-----HHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCc-eEEEEEe
Q 024366 2 SRPIFVGNFEYETR-----QSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRR-RLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t-----~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~-~i~v~~~ 73 (268)
.++|++.+|+..+- .....++|.+|.+...+++ ..+..-|-|.+++.|+.|...+++..|. |+ .++..++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~--~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFN--GKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccC--CCceEEEEEc
Confidence 45788888886642 3345567888877766666 5667788999999999999999999987 44 7777776
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
..
T Consensus 88 Q~ 89 (193)
T KOG4019|consen 88 QP 89 (193)
T ss_pred cC
Confidence 64
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.11 E-value=0.17 Score=41.39 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHhcCCCeeE-----EEe-eCCEEEEEEcCHH----HHHHHHHhcCCCCccCCCc--eEEEEEeccCCCcC
Q 024366 13 ETRQSELERLFSKYGRIER-----VDM-KSGFAFVYFEDDR----DAADAIRGLDNIPFGYDRR--RLSVEWARGERGRH 80 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~-----i~i-~~g~afV~f~~~~----~a~~a~~~l~~~~~~~~g~--~i~v~~~~~~~~~~ 80 (268)
+++.-+|.+-+.. .|.. |+| ..++-||.|..+- -..+.+..|+|..+.+.|- .|+|..+..+..-+
T Consensus 48 sisnwdlmerlk~--aid~~q~dsckiresnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfp 125 (445)
T KOG2891|consen 48 SISNWDLMERLKG--AIDNHQFDSCKIRESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFP 125 (445)
T ss_pred ccchHHHHHHHHh--hcccccccceeecccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCC
Confidence 4556666655542 3433 444 3578888887443 4556666677776543332 23332222111111
Q ss_pred --CCC---------CCCcCCCCCCcEEEEEccCCC------------CCCHHHHHHhhccCCCeEEEEE
Q 024366 81 --RDG---------SKSMANQRPTKTLFVINFDPI------------RTRERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 81 --~~~---------~~~~~~~~~~~~l~v~~l~~~------------~~~~~~l~~~f~~~g~v~~~~i 126 (268)
.++ .....+.....+||+.+| |- ..++..|...|..||.|..|.|
T Consensus 126 srhdwdd~fm~~kdmdemkpgerpdti~la~i-p~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 126 SRHDWDDFFMDAKDMDEMKPGERPDTIHLAGI-PCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred cccchHHHHhhhhhhhccCCCCCCCceeecCC-cceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 010 111223344567777777 41 2456789999999999999887
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=1.5 Score=39.74 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=62.0
Q ss_pred CccEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEe-----------------e------------------------
Q 024366 2 SRPIFVGNFEYE-TRQSELERLFSKY----GRIERVDM-----------------K------------------------ 35 (268)
Q Consensus 2 s~tl~V~nLp~~-~t~~~l~~~F~~~----G~v~~i~i-----------------~------------------------ 35 (268)
++.|-|-||.|. +...+|.-+|+.| |.|..|.| +
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 467899999987 7899999999876 58888877 1
Q ss_pred -----C---------CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 36 -----S---------GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 36 -----~---------g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+ -||.|+|.+.+.|.++.+.|.|..|.-.+..|-+.|-...
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 0 2899999999999999999999999866777777775543
No 222
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=90.03 E-value=2.1 Score=36.15 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.7
Q ss_pred CEEEEEEc
Q 024366 37 GFAFVYFE 44 (268)
Q Consensus 37 g~afV~f~ 44 (268)
.-.||-|.
T Consensus 174 T~v~vry~ 181 (367)
T KOG0835|consen 174 TDVFVRYS 181 (367)
T ss_pred cceeeecC
Confidence 34455553
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.20 E-value=0.44 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=26.8
Q ss_pred ccEEEcCCCCC------------CCHHHHHHHHhcCCCeeEEEe
Q 024366 3 RPIFVGNFEYE------------TRQSELERLFSKYGRIERVDM 34 (268)
Q Consensus 3 ~tl~V~nLp~~------------~t~~~l~~~F~~~G~v~~i~i 34 (268)
-|||+.+||-. -+++-|...|+.||.|..|.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 48999999843 257889999999999998877
No 224
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=84.45 E-value=17 Score=33.60 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=18.0
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i 126 (268)
....++|.+++-.++...-..+.+.++|++..|.|
T Consensus 60 nDrvvMVNGvsMenv~haFAvQqLrksgK~A~Itv 94 (1027)
T KOG3580|consen 60 NDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITV 94 (1027)
T ss_pred CCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEe
Confidence 34566666663233333333444556666666655
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.76 E-value=1.8 Score=35.78 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=38.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEe--eCCEEEEEEcCHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRI-ERVDM--KSGFAFVYFEDDRDAA 50 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v-~~i~i--~~g~afV~f~~~~~a~ 50 (268)
+-|+|+|||.++...||+..+.+-|-+ ..|.+ +.+-||+.|.+...|-
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~~ 381 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGVP 381 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCCC
Confidence 469999999999999999999887744 33433 6789999998876543
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=81.17 E-value=1.6 Score=31.39 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=24.5
Q ss_pred cEEEcCCCCC---------CCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHH
Q 024366 4 PIFVGNFEYE---------TRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDR 47 (268)
Q Consensus 4 tl~V~nLp~~---------~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~ 47 (268)
++.|-|++.. ++.++|.+.|..|.+++-.-+ +.|++.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 4677788654 467889999999988764444 5689999998643
No 227
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=80.02 E-value=1.1 Score=35.87 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVY 42 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~ 42 (268)
.+||+-|||..+|++.|..+..++|-++.+.+..-++|++
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~e 80 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHE 80 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheecccchhhhh
Confidence 6899999999999999999999999776665544444443
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=79.83 E-value=7.8 Score=32.14 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCe-EEEEE--eCCeEEEEeccH
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI--RRNFAFVQFETQ 138 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v-~~~~i--~~~~afV~f~~~ 138 (268)
...-|+++|| +..+...||+..+.+-+.+ ..+.+ ..+-||+.|.+.
T Consensus 329 ~~~di~~~nl-~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNL-SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccC-ccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3457999999 8899999999999887744 44555 678899999764
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.00 E-value=11 Score=34.48 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=57.8
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccC----CCeEEEEE-----------------e---------------------
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPY----GNVLHVRI-----------------R--------------------- 127 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~----g~v~~~~i-----------------~--------------------- 127 (268)
..+++.|-|.|++=..+...||.-+|..| |.|..|.| +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 55688999999954457778888877744 47888887 1
Q ss_pred --------C---------CeEEEEeccHHHHHHHHHhhCCCccC--CcEEEEEEee
Q 024366 128 --------R---------NFAFVQFETQEEATKALESTDRSKLV--DRVISVEYAL 164 (268)
Q Consensus 128 --------~---------~~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~a~ 164 (268)
+ -||.|+|.+...|....+.++|.++. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0 18999999999999999999999998 4555555553
No 230
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.49 E-value=0.48 Score=42.56 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
|.++|||.|++++++.++|..+...+--+..+-+ ...+++|+|.---....|+.+||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 3468999999999999999999998866666655 245788999877777777777877654
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.44 E-value=3.2 Score=31.97 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCc-EEEEEEeecCC
Q 024366 109 RDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDR-VISVEYALKDD 167 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~-~i~v~~a~~~~ 167 (268)
.....+|.+|-+.....+ ..+..-|.|.++..|..|..++++..|.|. .+..-|+....
T Consensus 30 ~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred HHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 334556666655555555 445666899999999999999999999988 77777776443
No 232
>PF14893 PNMA: PNMA
Probab=76.06 E-value=3.3 Score=35.56 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=31.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhc----CCCeeEEE-e-----eCCEEEEEEcCH
Q 024366 3 RPIFVGNFEYETRQSELERLFSK----YGRIERVD-M-----KSGFAFVYFEDD 46 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~----~G~v~~i~-i-----~~g~afV~f~~~ 46 (268)
+.|.|.+||.+|++++|++.+.. .|...-+- + ....|+|+|...
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 67999999999999999998764 34322110 0 345788888654
No 233
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=74.61 E-value=3.9 Score=31.46 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCHHHHHHHHhcC-CCeeEEEe---------eCCEEEEEEcCHHHHHHHHH
Q 024366 14 TRQSELERLFSKY-GRIERVDM---------KSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 14 ~t~~~l~~~F~~~-G~v~~i~i---------~~g~afV~f~~~~~a~~a~~ 54 (268)
.|+++|..+..-- |++..|.+ .+|-.||+|.+.+.|.++++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4455554443322 78999988 35899999999999998775
No 234
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.72 E-value=7.6 Score=33.79 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=43.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCe-eEE-EeeCCEEEEEEcCHHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRI-ERV-DMKSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v-~~i-~i~~g~afV~f~~~~~a~~a~~ 54 (268)
..|-|.++|.....+||...|+.|++- -+| ||....||..|.....|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhh
Confidence 467899999999999999999999743 233 4478899999999999999996
No 235
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=73.22 E-value=7.1 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCCeeEEEe
Q 024366 16 QSELERLFSKYGRIERVDM 34 (268)
Q Consensus 16 ~~~l~~~F~~~G~v~~i~i 34 (268)
.++|+++|+..|+|.-+-+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987655
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=72.72 E-value=3.2 Score=35.82 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=46.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEe----------eCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGR-IERVDM----------KSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~-v~~i~i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
..|.|.+||+.+|+.+|.+-+..|-+ |....+ ..+.|||.|..++++......++|..|.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 46789999999999999988877532 222222 2478999999999999888888888763
No 237
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=72.03 E-value=7.7 Score=37.07 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 024366 247 GRNRSPNFGRYRSRSPVRRS 266 (268)
Q Consensus 247 ~r~rs~~~~~~rsrs~~~r~ 266 (268)
.|++-+++.|-+-+.|+|+.
T Consensus 342 ~rsr~rs~rRErer~prRr~ 361 (1194)
T KOG4246|consen 342 ERSRQRSRRRERERIPRRRE 361 (1194)
T ss_pred ccccccccchhhhcchHhhh
Confidence 34444444444556666554
No 238
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=70.81 E-value=38 Score=24.70 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=47.3
Q ss_pred CCHHHHHHhhccCC-CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 106 TRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 106 ~~~~~l~~~f~~~g-~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
.+...+.+.+..-| .++.+....+...|.|.+.++-.+|.+.|+...-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45678888888888 677788888899999999999999998887666566777776664
No 239
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=69.68 E-value=0.71 Score=43.65 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.5
Q ss_pred CccEEEcCCCCCC-CHHHHHHHHhcCC
Q 024366 2 SRPIFVGNFEYET-RQSELERLFSKYG 27 (268)
Q Consensus 2 s~tl~V~nLp~~~-t~~~l~~~F~~~G 27 (268)
++||+|.+||..+ ++++|.++|.+.+
T Consensus 208 sRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 208 SRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CceEEeecCChhhcCchhHHHHHhhcC
Confidence 6899999999885 6888999999864
No 240
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=69.34 E-value=20 Score=22.98 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=36.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCH
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDD 46 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~ 46 (268)
..+|+|.++.=..-...+.+.+.....|..+.+ ..+.++|+|.+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 467888888777778889999999888877776 677799999983
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=67.30 E-value=9.5 Score=23.88 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCCeEEEEE
Q 024366 108 ERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 108 ~~~l~~~f~~~g~v~~~~i 126 (268)
.++|+++|+..|.|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987776
No 242
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=64.13 E-value=3.3 Score=28.06 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHh
Q 024366 2 SRPIFVGNFEYETRQSELERLFS 24 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~ 24 (268)
.+||.|.|||..+++++|++.++
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 37999999999999999998764
No 243
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=64.06 E-value=41 Score=29.60 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=29.2
Q ss_pred EEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 38 FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 38 ~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
||.|++.+.+.+......+.|..+......+.+.|..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 7889999999999999999999887555666666544
No 244
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=64.04 E-value=22 Score=25.62 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=32.1
Q ss_pred HhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccC
Q 024366 113 RHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 154 (268)
Q Consensus 113 ~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~ 154 (268)
++|...-.+....|...-|+.-|.+-+.|-.|...|-|..+.
T Consensus 98 qlfn~~~dlq~fii~ddraifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 98 QLFNAHVDLQRFIIDDDRAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred HhhccccceEEEEecCCeEEEEEeChhHHHHHHHHhhccchh
Confidence 345555556666667888999999999999999988777655
No 245
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=62.66 E-value=58 Score=23.78 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=43.3
Q ss_pred cEEEcCCCCC---CCHHHHHHHHhcCC-CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCC
Q 024366 4 PIFVGNFEYE---TRQSELERLFSKYG-RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60 (268)
Q Consensus 4 tl~V~nLp~~---~t~~~l~~~F~~~G-~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~ 60 (268)
.|.|...... .+...|++.+.+-| .++.+....+...|.|.+.++-.+|.+.|....
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L 97 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTL 97 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 4566655333 56778888888877 567787788899999999999888887776554
No 246
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=61.80 E-value=34 Score=20.85 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=35.5
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHH
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDR 47 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~ 47 (268)
||.|.||.=.--...|.+.+...-.|.++.+ ..+.+-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCC
Confidence 5778888777778889999999888988877 5688999997553
No 247
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=59.03 E-value=32 Score=22.30 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=31.6
Q ss_pred HHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 21 RLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 21 ~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
.-+..||.|..+.-...|+ |-|.+.++++..++.|....|
T Consensus 15 r~L~kfG~i~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKKMKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEEECCccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3567899998886556677 557799999999999888776
No 248
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.70 E-value=59 Score=30.48 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCHHHHHHHHhcCCCeeEEEeeC-CEEEEEEcCHHHHHHHHHhcCC--C----CccCCCceEEEEEeccCCCcCCCCCCC
Q 024366 14 TRQSELERLFSKYGRIERVDMKS-GFAFVYFEDDRDAADAIRGLDN--I----PFGYDRRRLSVEWARGERGRHRDGSKS 86 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i~i~~-g~afV~f~~~~~a~~a~~~l~~--~----~~~~~g~~i~v~~~~~~~~~~~~~~~~ 86 (268)
.-.++|.+.|..-+-|..|.+.. ||-++.+.....+...++.+.. . .....+++|.|+++.+
T Consensus 58 eiA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa----------- 126 (577)
T COG0018 58 EIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA----------- 126 (577)
T ss_pred HHHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC-----------
Confidence 34556666666655677888754 8877777765555555555552 2 2222478999999874
Q ss_pred cCCCCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEE
Q 024366 87 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVR 125 (268)
Q Consensus 87 ~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~ 125 (268)
.|..-|+|+.| -..+--+-|-.++...| .|+...
T Consensus 127 ----NptkplHiGHl-R~aiiGDsLaril~~~Gy~V~r~~ 161 (577)
T COG0018 127 ----NPTGPLHIGHL-RNAIIGDSLARILEFLGYDVTREN 161 (577)
T ss_pred ----CCCCCcccchh-hhhHHHHHHHHHHHHcCCCeeEEe
Confidence 35677999999 66666788999998888 555443
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.61 E-value=44 Score=29.31 Aligned_cols=55 Identities=24% Similarity=0.443 Sum_probs=42.4
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCe-EEEE-EeCCeEEEEeccHHHHHHHHHh
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVR-IRRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v-~~~~-i~~~~afV~f~~~~~a~~A~~~ 147 (268)
-...|-|.++ |.....+||-..|..|+.- .+|. +....||..|.+..-|..|+-.
T Consensus 390 lpHVlEIydf-p~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDF-PDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccC-chhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 4678899999 6666678888889888732 3333 3778999999999999999874
No 250
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.76 E-value=10 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccH
Q 024366 106 TRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQ 138 (268)
Q Consensus 106 ~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~ 138 (268)
.+.+.|.+.|..|..+....+ ..++++|+|...
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 345789999999987764444 457999999653
No 251
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=56.23 E-value=22 Score=30.30 Aligned_cols=32 Identities=28% Similarity=0.214 Sum_probs=23.4
Q ss_pred EEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 39 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 39 afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
|||+|.++.+|..|++.+.... ...+.++.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCC
Confidence 7999999999999998655443 3445666544
No 252
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=54.98 E-value=26 Score=24.96 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=50.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRD 82 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~ 82 (268)
.||.| ||+-++ .|-+.|+.-|+|.+|..-.+ |. -..|+-.++|+.-.++|. |.|.-........
T Consensus 6 QtVqV--lPPYTn--KLSDYfeSPGKI~svItvtq-----yp----dndal~~~~G~lE~vDg~-i~IGs~q~~~sV~-- 69 (145)
T TIGR02542 6 QTVQV--LPPYTN--KLSDYFESPGKIQSVITVTQ-----YP----DNDALLYVHGTLEQVDGN-IRIGSGQTPASVR-- 69 (145)
T ss_pred cceEe--cCCccc--hhhHHhcCCCceEEEEEEec-----cC----CchhhheeeeehhhccCc-EEEccCCCcccEE--
Confidence 34444 566553 58899999999998754221 22 223444567776555555 6665332110000
Q ss_pred CCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhcc
Q 024366 83 GSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEP 117 (268)
Q Consensus 83 ~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~ 117 (268)
....+..+.+. ++|+.++..+++++|..
T Consensus 70 ----i~gTPsgnnv~---F~PYTlT~~e~r~iF~E 97 (145)
T TIGR02542 70 ----IQGTPSGNNVI---FPPYTLTYNELRQIFRE 97 (145)
T ss_pred ----EecCCCCCcee---cCceeeeHHHHHHHHhh
Confidence 00011112222 23788999999999984
No 253
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=53.31 E-value=57 Score=21.18 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCeeEEEe--e--CCEEEEEEcCHHHHHHHHHhcC
Q 024366 17 SELERLFSKYGRIERVDM--K--SGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 17 ~~l~~~F~~~G~v~~i~i--~--~g~afV~f~~~~~a~~a~~~l~ 57 (268)
.+|.+.+..+| +....| . -++.|+-+.+.+.+..+.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778889 666677 4 5688888889999888887664
No 254
>PRK02886 hypothetical protein; Provisional
Probab=53.29 E-value=41 Score=22.72 Aligned_cols=39 Identities=26% Similarity=0.544 Sum_probs=30.7
Q ss_pred HHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 22 LFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 22 ~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
.+..||.|..+.-...|+ |-|.+.++|+..++.|....|
T Consensus 20 ~LrkyG~I~Y~Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 457899998876555666 557799999999998888776
No 255
>PRK02302 hypothetical protein; Provisional
Probab=52.41 E-value=43 Score=22.74 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=30.9
Q ss_pred HHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 22 LFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 22 ~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
.+..||.|..+.-...|+ |-|.+.++|+..++.|....+
T Consensus 22 ~LrkfG~I~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 457899998886555666 557799999999998888776
No 256
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=50.94 E-value=16 Score=35.12 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.0
Q ss_pred CCcEEEEEcc
Q 024366 92 PTKTLFVINF 101 (268)
Q Consensus 92 ~~~~l~v~~l 101 (268)
.....|++++
T Consensus 144 ~~qR~f~gvv 153 (1194)
T KOG4246|consen 144 EPQRRFAGVV 153 (1194)
T ss_pred Ccceeeehhh
Confidence 3456677665
No 257
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.75 E-value=14 Score=20.38 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhcCCC
Q 024366 12 YETRQSELERLFSKYGR 28 (268)
Q Consensus 12 ~~~t~~~l~~~F~~~G~ 28 (268)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 45789999999988653
No 258
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=49.08 E-value=6.3 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=16.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHh
Q 024366 2 SRPIFVGNFEYETRQSELERLFS 24 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~ 24 (268)
+++||||+||..+-.++=..++.
T Consensus 27 Sr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 27 SRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred CceEEECCCChHHHHcCcchHHH
Confidence 68999999998876665444443
No 259
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.31 E-value=26 Score=29.93 Aligned_cols=35 Identities=31% Similarity=0.294 Sum_probs=25.6
Q ss_pred EEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 131 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 131 afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
|||+|++..+|+.|++.+..... ..+.+..|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 79999999999999997654443 445666665443
No 260
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.93 E-value=57 Score=21.50 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=37.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEe---eC--CEEEEEEcCHHHHHHHHH
Q 024366 4 PIFVGNFEYETRQSELERLFSK-YG-RIERVDM---KS--GFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~i---~~--g~afV~f~~~~~a~~a~~ 54 (268)
.-|+-.++..+|..+|++.++. || +|..|.. .. --|||++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3567778999999999999987 44 4555544 22 479999988888877643
No 261
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=46.16 E-value=33 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.8
Q ss_pred CeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 129 NFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 129 ~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
.+.+|.|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 467899999999999998887665543
No 262
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=44.46 E-value=2.9e+02 Score=26.33 Aligned_cols=60 Identities=3% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHhcCCCe-----eEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 12 YETRQSELERLFSKYGRI-----ERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 12 ~~~t~~~l~~~F~~~G~v-----~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
..++..+|..++..-+.| -.|.|...|.||+.... .|...++.|++..+. |+.|.|+.+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG-MPGEVLQHFTRTRIL--NKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChh-hHHHHHHHhcccccc--CCceEEEECC
Confidence 457888888888766544 35777899999999654 577888889888876 8888888653
No 263
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=44.25 E-value=78 Score=21.10 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=27.6
Q ss_pred EEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEecc----HHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 96 LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 96 l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~----~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
|-++++.|..+ .+++-.++.-..|-.+.| -...|||.|+. .++..++++.+....+..+.|+++-
T Consensus 3 lkfg~It~eeA--~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveE 73 (88)
T PF11491_consen 3 LKFGNITPEEA--MVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEE 73 (88)
T ss_dssp EE--S-TTTTT--HHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-------SS
T ss_pred cccCCCCHHHH--HHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheeeccccHHH
Confidence 44566744443 355666777777777776 23468999965 4788888999998888888877653
No 264
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.68 E-value=66 Score=21.59 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=37.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEe---eC--CEEEEEEcCHHHHHHHHH
Q 024366 5 IFVGNFEYETRQSELERLFSK-YG-RIERVDM---KS--GFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~i---~~--g~afV~f~~~~~a~~a~~ 54 (268)
-|+-.++..++..+|++.++. || +|..|.. .. --|||.+...+.|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 456667889999999999987 45 4555554 23 479999999888887654
No 265
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=41.68 E-value=1.1e+02 Score=22.48 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=23.0
Q ss_pred cEEEcCCC----CCCCHHHHHHHHhcCCCeeEEE--eeCCEEEEE
Q 024366 4 PIFVGNFE----YETRQSELERLFSKYGRIERVD--MKSGFAFVY 42 (268)
Q Consensus 4 tl~V~nLp----~~~t~~~l~~~F~~~G~v~~i~--i~~g~afV~ 42 (268)
-+++.+|. ..+.-.+|+++|...| ..+|+ |..|-..++
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~SGNvvf~ 48 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQSGNVVFE 48 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTTTEEEEE
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEeeCCEEEe
Confidence 35667764 3488999999999988 45544 356655555
No 266
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=41.27 E-value=14 Score=31.66 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 14 TRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
++...|.+++++.|+|..-.| +-|.+||-.-.+++++++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 446778888899998876555 6799999999999999999988865
No 267
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=41.18 E-value=67 Score=22.12 Aligned_cols=46 Identities=11% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHhcC--------CCeeEEEe-------------eCC-EEEEEEcCHHHHHHHHHh
Q 024366 10 FEYETRQSELERLFSKY--------GRIERVDM-------------KSG-FAFVYFEDDRDAADAIRG 55 (268)
Q Consensus 10 Lp~~~t~~~l~~~F~~~--------G~v~~i~i-------------~~g-~afV~f~~~~~a~~a~~~ 55 (268)
|.++++++++..+.+.+ |+|..+.- ..| |.++.|....++.+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 56778888877766543 46655543 234 788899877777777654
No 268
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.64 E-value=18 Score=29.25 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI 126 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i 126 (268)
...+||+.|+ |..++++.|..+.+..|.+..+.+
T Consensus 39 eKd~lfl~Nv-p~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNV-PLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecc-cccccHHHHHHHHHHhhhhhheec
Confidence 4678999999 888999999999999997766655
No 269
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=40.64 E-value=3.2e+02 Score=25.79 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=8.2
Q ss_pred CcEEEEEccCCCCCCH
Q 024366 93 TKTLFVINFDPIRTRE 108 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~ 108 (268)
.+.|.|..+-|....+
T Consensus 39 etSiViSDVlpGGPAe 54 (1027)
T KOG3580|consen 39 ETSIVISDVLPGGPAE 54 (1027)
T ss_pred ceeEEEeeccCCCCcc
Confidence 3456666654544433
No 270
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=40.16 E-value=1.1e+02 Score=20.10 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=35.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-------CCCeeEEEe--e--CC--EEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 5 IFVGNFEYETRQSELERLFSK-------YGRIERVDM--K--SG--FAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~-------~G~v~~i~i--~--~g--~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
|...+||..+|.++|...... +..|..+.- . .+ ||+.+=.+++++.++.+. .|.+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 556789998999999887654 333444332 2 44 555555677777776654 36665
No 271
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=40.11 E-value=58 Score=21.69 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=22.7
Q ss_pred CeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 28 RIERVDM---KSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 28 ~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
.|..+.. -+||.|||=.++.++..|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4555555 5899999999999999998765544
No 272
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=39.42 E-value=1.2e+02 Score=20.52 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCC-CeeEEEeeC----CEEEEEEcCHHHHHHHHHhcC
Q 024366 16 QSELERLFSKYG-RIERVDMKS----GFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 16 ~~~l~~~F~~~G-~v~~i~i~~----g~afV~f~~~~~a~~a~~~l~ 57 (268)
.+.++++++.+| +++++.+.. -.+.+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 455777777775 788887743 477889999988887664433
No 273
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=39.05 E-value=86 Score=18.76 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=33.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDA 49 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a 49 (268)
.+++|.+.....+.++|.+++..+|--..-.+....-+|-+.+.+..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~ 48 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGP 48 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCc
Confidence 35788888778999999999999986444444545556666555543
No 274
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.61 E-value=16 Score=32.01 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=41.2
Q ss_pred CccEEEcCCCCCCCHH--------HHHHHHhc--CCCeeEEEe--------eCCEEEEEEcCHHHHHHHHH
Q 024366 2 SRPIFVGNFEYETRQS--------ELERLFSK--YGRIERVDM--------KSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~--------~l~~~F~~--~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~ 54 (268)
-+.+|+.+++...+.+ ++...|.. .+++..|.+ .+|..|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777665544 89999988 677777776 46889999999999998874
No 275
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.89 E-value=41 Score=29.31 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=40.8
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE----------eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI----------RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i----------~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
-..+.|.+| |...++++|.+...++- .|....+ .-+.|+|.|.+.++...-..-++|..+
T Consensus 7 ~~Kvv~rrl-pp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRL-PPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecC-CCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456788888 66777777776666554 2222222 234789999999998887777777665
No 276
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=35.86 E-value=1.4e+02 Score=20.78 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHHHHhhccCC-CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCc
Q 024366 108 ERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSK 152 (268)
Q Consensus 108 ~~~l~~~f~~~g-~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~ 152 (268)
...+.+.+..-| .+..+....+...|.|.+.++-.+|.+.|+...
T Consensus 48 ~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 48 AFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred HHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 358888998888 567788888899999999998888888776443
No 277
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=35.45 E-value=50 Score=21.21 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=33.9
Q ss_pred HHHHHhhccCC-CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 109 RDIKRHFEPYG-NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 109 ~~l~~~f~~~g-~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
++|++.|...| ++..+.- +.+.-+|+.....+-.. .|+=+.+++..++|+-...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888888 5666655 33466777655543333 3445678888888876543
No 278
>PLN02286 arginine-tRNA ligase
Probab=35.17 E-value=3.3e+02 Score=25.58 Aligned_cols=82 Identities=22% Similarity=0.185 Sum_probs=48.0
Q ss_pred eeEEEeeC-CEEEEEEcCHHHHHHHHHhcC-CCCcc---CCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCC
Q 024366 29 IERVDMKS-GFAFVYFEDDRDAADAIRGLD-NIPFG---YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDP 103 (268)
Q Consensus 29 v~~i~i~~-g~afV~f~~~~~a~~a~~~l~-~~~~~---~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~ 103 (268)
|..|.+.. ||-=+.+....-+..+...+. +..++ ..+++|.|+|+.+- |...|+|+.+ -
T Consensus 75 i~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpN---------------p~kplHvGHl-R 138 (576)
T PLN02286 75 IESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPN---------------IAKEMHVGHL-R 138 (576)
T ss_pred eeeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCC---------------CCCCCccccc-c
Confidence 66666643 454444444444444333332 22211 13578999997643 5667888888 5
Q ss_pred CCCCHHHHHHhhccCC-CeEEEEE
Q 024366 104 IRTRERDIKRHFEPYG-NVLHVRI 126 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g-~v~~~~i 126 (268)
..+--+-|..++.-.| .|.....
T Consensus 139 saiiGdsLaril~~~G~~V~r~ny 162 (576)
T PLN02286 139 STIIGDTLARMLEFSGVEVLRRNH 162 (576)
T ss_pred chhhHHHHHHHHHHcCCceEEEEe
Confidence 5666677888888877 5554443
No 279
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=34.86 E-value=62 Score=20.39 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred CHHHHHHHHhcCCCeeEEEe------eCCEEEE
Q 024366 15 RQSELERLFSKYGRIERVDM------KSGFAFV 41 (268)
Q Consensus 15 t~~~l~~~F~~~G~v~~i~i------~~g~afV 41 (268)
-+.+|...|-+-.+|+++-| .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 35678888888888888876 5788887
No 280
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.86 E-value=1.4e+02 Score=22.38 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=24.0
Q ss_pred eeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 29 IERVDM---KSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 29 v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
|.+|.+ -+||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 666666 5799999999888888888766544
No 281
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=34.01 E-value=23 Score=26.27 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=37.9
Q ss_pred HHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..|..+....+.+.-..+..++..+.|.+.+++..++.. ....+++..+.++.-
T Consensus 36 ~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRW 89 (153)
T ss_pred HHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEec-ccccccccchhhhhh
Confidence 344444455667777777999999999999999998873 345566665555443
No 282
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.92 E-value=63 Score=20.65 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHhhccCC-CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 109 RDIKRHFEPYG-NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 109 ~~l~~~f~~~g-~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
++|.+.|...| .|..+.- +....||+.+...+..+ .++=..+++..|+|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46777777777 5555543 22467777766655333 34447788899988876543
No 283
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.63 E-value=73 Score=26.82 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--C-------------CeEEEEeccHHHHHHHH----HhhC--C
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--R-------------NFAFVQFETQEEATKAL----ESTD--R 150 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--~-------------~~afV~f~~~~~a~~A~----~~l~--g 150 (268)
.++.|.+.|+ ...++-..+-..|.+||+|+.|.+- . ....+.|-+.+.+..-. +.|. .
T Consensus 14 rTRSLLfeNv-~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENV-NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhc-cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4667889999 5778888888889999999999991 1 36788998888775443 2222 2
Q ss_pred CccCCcEEEEEEee
Q 024366 151 SKLVDRVISVEYAL 164 (268)
Q Consensus 151 ~~~~g~~i~v~~a~ 164 (268)
+.+.-..|++.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 44566777777765
No 284
>PHA01632 hypothetical protein
Probab=32.67 E-value=49 Score=20.09 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q 024366 5 IFVGNFEYETRQSELERLFSK 25 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~ 25 (268)
|.|..+|..-|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 446788999999999987754
No 285
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.98 E-value=93 Score=20.99 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=25.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFE 44 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~ 44 (268)
.-|||||++..+-+.-...+.+..++=..+-+ ..||+|-++.
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 45899999887766655555554432222222 4577776663
No 286
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.82 E-value=1.2e+02 Score=19.97 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=34.8
Q ss_pred EEEccCCCCCCHHHHHHhhcc-CC-CeEEEEE---eC--CeEEEEeccHHHHHHHHHhh
Q 024366 97 FVINFDPIRTRERDIKRHFEP-YG-NVLHVRI---RR--NFAFVQFETQEEATKALEST 148 (268)
Q Consensus 97 ~v~~l~~~~~~~~~l~~~f~~-~g-~v~~~~i---~~--~~afV~f~~~~~a~~A~~~l 148 (268)
|+..+ ...++..+|+..++. |+ .|..|.. +. .-|||.+..-+.|.+...++
T Consensus 17 y~F~V-~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIV-DRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEE-CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 34444 457889999988886 44 4555444 33 36999998888888776554
No 287
>PRK15464 cold shock-like protein CspH; Provisional
Probab=30.60 E-value=35 Score=21.95 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=15.3
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 37777777789999996654
No 288
>PHA00019 IV phage assembly protein
Probab=30.17 E-value=4.1e+02 Score=23.85 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHhcCCCeeEEEe--eC-CEEEEEE-------cCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 11 EYETRQSELERLFSKYGRIERVDM--KS-GFAFVYF-------EDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 11 p~~~t~~~l~~~F~~~G~v~~i~i--~~-g~afV~f-------~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
|-++...+|.++|..++.+..+.+ .. =.+-|+. ...++|..++-..+|..+...|..+.|..
T Consensus 25 ~l~f~~~dI~~vl~~la~~~g~NiVidp~V~G~vTl~~~~l~~v~~~qaLd~iL~~~gl~~~~~g~v~~I~~ 96 (428)
T PHA00019 25 PVELNNSPIREFVSWYSQQTGKSVVLGPDVKGNVTVYSADVNPANLPQFFDSVLRANGFDLVAGGPAVVIKQ 96 (428)
T ss_pred EEEecCCCHHHHHHHHHHhcCceEEECCCcceEEEEecccccCCCHHHHHHHHHHhcCceEEEeCCEEEEEe
Confidence 344556677777777776654443 22 1334555 24455555555667777644566666643
No 289
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=30.17 E-value=40 Score=21.45 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=27.8
Q ss_pred CCCeeEEEeeCCEEEEEEcCH-HHH---HHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 26 YGRIERVDMKSGFAFVYFEDD-RDA---ADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~~-~~a---~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
.|.|+.....+||+||+=.+. +++ ..++. ..+....-.|..|........
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~-~~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQ-MDGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhh-hcCCCCCCCCCEEEEEEEECC
Confidence 377877777899999976552 222 12332 123211124677776665543
No 290
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=29.84 E-value=2.4e+02 Score=24.11 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=14.1
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q 024366 7 VGNFEYETRQSELERLFSKY 26 (268)
Q Consensus 7 V~nLp~~~t~~~l~~~F~~~ 26 (268)
|-...+.++++++.+|...+
T Consensus 104 in~~Gp~is~~~~~~~l~~~ 123 (310)
T COG1105 104 INFPGPEISEAELEQFLEQL 123 (310)
T ss_pred ecCCCCCCCHHHHHHHHHHH
Confidence 33445788888888877665
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=29.73 E-value=1.8e+02 Score=27.24 Aligned_cols=96 Identities=9% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE-EE--EeccCCC-------cCCCCCCCcCCCCCCcEEEEEccCCCC
Q 024366 36 SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS-VE--WARGERG-------RHRDGSKSMANQRPTKTLFVINFDPIR 105 (268)
Q Consensus 36 ~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~-v~--~~~~~~~-------~~~~~~~~~~~~~~~~~l~v~~l~~~~ 105 (268)
.=-||+++.+++..+-..+.|+-.++. .| .|. |. ||.+-.. ++....-..++......||+.+| +..
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmy-sG-~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGl-STS 312 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMY-SG-EIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGL-STS 312 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchh-cc-cccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcc-ccc
Confidence 347999999999888888888877764 12 222 11 1111100 00001112345556789999999 667
Q ss_pred CCHHHHHHhhccCCCeEEEEE-eCCeEEEEe
Q 024366 106 TRERDIKRHFEPYGNVLHVRI-RRNFAFVQF 135 (268)
Q Consensus 106 ~~~~~l~~~f~~~g~v~~~~i-~~~~afV~f 135 (268)
+.++.-.++....-.++++.| ..+|| |+|
T Consensus 313 lP~dVQ~~~irsipGlEna~i~rpgYA-IEY 342 (621)
T COG0445 313 LPEDVQEQIIRSIPGLENAEILRPGYA-IEY 342 (621)
T ss_pred CCHHHHHHHHHhCcccccceeecccee-eee
Confidence 766666666676767777777 34454 444
No 292
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=29.58 E-value=75 Score=20.86 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=21.2
Q ss_pred eeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 29 IERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 29 v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
|+.++...+..+|.|...++-++|.. |.|..+
T Consensus 47 v~~~~~~~~~~i~~~~gi~~r~~Ae~-l~g~~l 78 (84)
T PF01782_consen 47 VESVRPHGKSLIVKFEGIDDREAAEA-LRGCEL 78 (84)
T ss_dssp EEEEEEETTEEEEEETT--SHHHHHT-TTT-EE
T ss_pred EEEEEEeCCEEEEEEcCCCCHHHHHh-hCCCEE
Confidence 34444578999999999999888864 665543
No 293
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=29.58 E-value=1.1e+02 Score=27.38 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCeeEEE--e---eCCEEEEEEc--CHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 16 QSELERLFSKYGRIERVD--M---KSGFAFVYFE--DDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 16 ~~~l~~~F~~~G~v~~i~--i---~~g~afV~f~--~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
..+|.++|..+.....+. + -.|..-+.|. +.++|-.++-.++|..+..+|..|.|....
T Consensus 10 ~~~l~dvL~~la~~~g~NiVi~~~V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~ 75 (418)
T TIGR02515 10 DIPVRTVLQVIAEFTNLNIVVSDSVQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLD 75 (418)
T ss_pred CCCHHHHHHHHHHHhCCeEEECCCCcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHH
Confidence 344555555444343333 3 2455556665 445777777777888776678888887654
No 294
>COG5584 Predicted small secreted protein [Function unknown]
Probab=29.43 E-value=49 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEe
Q 024366 9 NFEYETRQSELERLFSKYGRIERVDM 34 (268)
Q Consensus 9 nLp~~~t~~~l~~~F~~~G~v~~i~i 34 (268)
||......+-+++.|+++|+|+.-+|
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI 54 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWI 54 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEE
Confidence 45555566667778888888876555
No 295
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=29.40 E-value=2.4e+02 Score=26.40 Aligned_cols=82 Identities=11% Similarity=0.243 Sum_probs=47.9
Q ss_pred eeEEEeeCCEEEEEEcCHHHHHHHHHhc-C-CCCcc----CCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccC
Q 024366 29 IERVDMKSGFAFVYFEDDRDAADAIRGL-D-NIPFG----YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFD 102 (268)
Q Consensus 29 v~~i~i~~g~afV~f~~~~~a~~a~~~l-~-~~~~~----~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 102 (268)
|..|.+..+|--+.+.+...+..++..+ . +..++ ..+.+|.|+|+.+ .|...|+|+++
T Consensus 70 i~~ve~~g~fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSp---------------Np~kplHvGH~- 133 (562)
T PRK12451 70 FTKVEAVGPYVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSP---------------NIAKPFSMGHL- 133 (562)
T ss_pred cceeEeeCCEEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCC---------------CCCCCcccchh-
Confidence 5666666664333343333333333222 2 11121 1367899999764 35677888888
Q ss_pred CCCCCHHHHHHhhccCC-CeEEEEE
Q 024366 103 PIRTRERDIKRHFEPYG-NVLHVRI 126 (268)
Q Consensus 103 ~~~~~~~~l~~~f~~~g-~v~~~~i 126 (268)
-..+--+.|..++...| .|.....
T Consensus 134 R~aiiGd~l~ril~~~G~~V~r~ny 158 (562)
T PRK12451 134 RSTMIGNALKHIAEKCGYEVVGINY 158 (562)
T ss_pred hhHHHHHHHHHHHHHCCCCeEEEee
Confidence 56666788888888887 5555443
No 296
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=29.33 E-value=8.8 Score=34.92 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLV 154 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 154 (268)
..+.|++.|+ ...++-++|..++..+-.+..+.+. ..+.+|.|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni-~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNI-LPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhcc-CCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3567899999 5688899999999998887777762 236889997666666666666665554
No 297
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=29.24 E-value=54 Score=27.12 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=35.0
Q ss_pred CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 37 g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
..|+|.|.|-|.. -+-+..|... |..|.+.. .....+.++|-+.|+ |..+.-..|+....
T Consensus 90 ~IAlv~y~dGek~--yilAp~Gl~v---Gd~I~sG~--------------~a~ik~GN~lpL~~I-P~Gt~VhNVE~~pG 149 (275)
T COG0090 90 PIALVVYEDGEKR--YILAPEGLKV---GDVIESGK--------------DADIKPGNALPLGNI-PEGTIVHNVELKPG 149 (275)
T ss_pred ceEEEEecCCCEE--EEEccCcccc---CCEEEeCC--------------CCCcCCcceeeeccC-CCCceEEeeeeccC
Confidence 5777777766543 1112233333 44444332 224556788888888 77765555554444
Q ss_pred cCCCe
Q 024366 117 PYGNV 121 (268)
Q Consensus 117 ~~g~v 121 (268)
.=|++
T Consensus 150 ~GGq~ 154 (275)
T COG0090 150 DGGQL 154 (275)
T ss_pred CCceE
Confidence 44443
No 298
>PRK14998 cold shock-like protein CspD; Provisional
Probab=29.10 E-value=44 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.9
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+...-.+||+||+=.+
T Consensus 4 G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred eEEEEEeCCCceEEEecCC
Confidence 7777777789999996544
No 299
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=29.03 E-value=44 Score=21.77 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.0
Q ss_pred CCeeEEEeeCCEEEEEEc
Q 024366 27 GRIERVDMKSGFAFVYFE 44 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~ 44 (268)
|.|+...-.+||+||+=.
T Consensus 4 G~Vkwfn~~KGfGFI~~~ 21 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPE 21 (74)
T ss_pred eEEEEEeCCCCeEEEeeC
Confidence 677777778999999554
No 300
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=28.49 E-value=2.8e+02 Score=23.52 Aligned_cols=95 Identities=11% Similarity=0.162 Sum_probs=49.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC-CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYG-RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 83 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~ 83 (268)
++|-+.|++..-..|-..|...| .|.+..-+.|.-||.|..+++. ....|-+..+......-.|.....
T Consensus 201 ~l~~~~~fd~aW~rl~~aL~~~gf~V~d~drs~G~~~v~y~~~~~~--~w~~l~~~~~~l~~~~Y~i~l~~~-------- 270 (303)
T PF06804_consen 201 ALILRAPFDRAWRRLGLALDRLGFTVEDRDRSQGVYYVRYKPPDSE--FWSSLGGKDPDLKAGEYRIQLGDL-------- 270 (303)
T ss_dssp EEEEES-HHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEE----HH--HHHHHTS------SEEEEEEEEEE--------
T ss_pred EEEECCcHHHHHHHHHHHHHhCCCEEEecccccEEEEEEEcCCChh--hHHHcCCCccccCCCceEEEEEeC--------
Confidence 45556677777778888888888 6777777999999999887654 233344333322222223332221
Q ss_pred CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 84 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 84 ~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
...+.|.|.+-+....+.+.+..++.
T Consensus 271 -------g~~t~v~v~d~~G~~l~~~~~~~l~~ 296 (303)
T PF06804_consen 271 -------GNRTSVTVLDSDGKPLSSEQAQRLYQ 296 (303)
T ss_dssp -------TTEEEEEEE-TTSSB--HHHHHHHHH
T ss_pred -------CCcEEEEEECCCCCCCCHHHHHHHHH
Confidence 12456667666445555666555544
No 301
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=28.43 E-value=46 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=15.8
Q ss_pred CCeeEEEeeCCEEEEEEcCHH
Q 024366 27 GRIERVDMKSGFAFVYFEDDR 47 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~~ 47 (268)
|.|+.+...+||+||+-.+.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEECCCCceEEEEcccc
Confidence 567666668899999886644
No 302
>PRK11901 hypothetical protein; Reviewed
Probab=28.28 E-value=1.2e+02 Score=25.96 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=34.0
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE----eCC---eEEE--EeccHHHHHHHHHhhCC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRN---FAFV--QFETQEEATKALESTDR 150 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i----~~~---~afV--~f~~~~~a~~A~~~l~g 150 (268)
..+|.|..+ ..++.|..|...++ +..+.| ..| |..| .|.+.++|..|+..|-.
T Consensus 245 ~YTLQL~Aa----s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA----SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC----CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555544 44778888887765 333333 222 4433 78999999999998853
No 303
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.16 E-value=1.4e+02 Score=20.08 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHhhcc-CC-CeEEEEE---eC--CeEEEEeccHHHHHHHHHhh
Q 024366 103 PIRTRERDIKRHFEP-YG-NVLHVRI---RR--NFAFVQFETQEEATKALEST 148 (268)
Q Consensus 103 ~~~~~~~~l~~~f~~-~g-~v~~~~i---~~--~~afV~f~~~~~a~~A~~~l 148 (268)
...++..+|++.++. || .|..|.. +. .-|||.+...++|.+...++
T Consensus 29 ~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 29 DRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 457888899998886 44 5555554 33 36999999988888876554
No 304
>PF15063 TC1: Thyroid cancer protein 1
Probab=28.10 E-value=38 Score=22.08 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCe
Q 024366 6 FVGNFEYETRQSELERLFSKYGRI 29 (268)
Q Consensus 6 ~V~nLp~~~t~~~l~~~F~~~G~v 29 (268)
-+.||=.+++.+.|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 356788899999999999998854
No 305
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=27.93 E-value=3.1e+02 Score=25.69 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCCeeEEEeeCCEEEEEEcCH--HHHHHHHHhc-CC-CCcc---CCCceEEEEEeccCCCcCCCCCCCcCC
Q 024366 17 SELERLFSKYGRIERVDMKSGFAFVYFEDD--RDAADAIRGL-DN-IPFG---YDRRRLSVEWARGERGRHRDGSKSMAN 89 (268)
Q Consensus 17 ~~l~~~F~~~G~v~~i~i~~g~afV~f~~~--~~a~~a~~~l-~~-~~~~---~~g~~i~v~~~~~~~~~~~~~~~~~~~ 89 (268)
++|.+.+..-..|+.|.+..+ ||.|.-. .-+...+..+ .. ..++ ..+..|.|+++.+.
T Consensus 58 ~~i~~~l~~~~~i~~ve~~gp--fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ve~~spn------------- 122 (566)
T TIGR00456 58 EEIVLKLKTGEIIEKVEAAGP--FINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIIIEFSSAN------------- 122 (566)
T ss_pred HHHHHhCCCcCcEeEEEEeCC--EEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEEEecCCC-------------
Confidence 344444433344777877656 6666533 3344434222 21 1221 11567888887643
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVR 125 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~ 125 (268)
+...++|+++ -..+--+-|..++..+| .|....
T Consensus 123 --~~~~~hiGh~-r~~~~gd~l~r~~~~~g~~v~r~~ 156 (566)
T TIGR00456 123 --PAGPLHIGHL-RNAIIGDSLARILEFLGYDVIREY 156 (566)
T ss_pred --CCCCCchhhh-HHHHHHHHHHHHHHHCCCCeeEEe
Confidence 4566888888 45555677777777776 444433
No 306
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=27.86 E-value=44 Score=21.38 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=14.9
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
-|.|+...-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777789999997544
No 307
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.62 E-value=9.6 Score=33.66 Aligned_cols=70 Identities=7% Similarity=-0.120 Sum_probs=46.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee--------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK--------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
|+..++..||...+++++.-+|+.||.|..+.++ .-.+||+..+. +|..++..+.-+.+. +..+.+..+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~--~~~~r~~~~ 79 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTF--ESQDRKAVS 79 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhh--hhhhhhhcC
Confidence 3456788999999999999999999999888772 23677776554 334444433333333 445555444
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 80 ~ 80 (572)
T KOG4365|consen 80 P 80 (572)
T ss_pred c
Confidence 3
No 308
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.59 E-value=3.7e+02 Score=23.93 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=27.6
Q ss_pred eEEEEeccHHHHHHHHHhhCCCccCC--cEEEEEEe
Q 024366 130 FAFVQFETQEEATKALESTDRSKLVD--RVISVEYA 163 (268)
Q Consensus 130 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~a 163 (268)
||.|++.+...+......++|.++.. ..+-+.|.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 78999999999999999999998874 44555554
No 309
>PRK11679 lipoprotein; Provisional
Probab=27.58 E-value=4.1e+02 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=35.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC-CeeEEEeeCCEEEEEEcCHHH
Q 024366 5 IFVGNFEYETRQSELERLFSKYG-RIERVDMKSGFAFVYFEDDRD 48 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i~~g~afV~f~~~~~ 48 (268)
++|-+.|++..-.-|-..+...| .|++-.-+.|.-||.|..+++
T Consensus 242 ~l~~~~~fdraW~rlg~aLdr~Gf~V~Drdrs~G~y~V~y~~~~~ 286 (346)
T PRK11679 242 VLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSD 286 (346)
T ss_pred EEEeCCcHHHHHHHHHHHHHhcCCeEeeccccCcEEEEEecCCCc
Confidence 55666777777777888888888 777887799999999998876
No 310
>PRK15463 cold shock-like protein CspF; Provisional
Probab=27.11 E-value=45 Score=21.43 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred eEEEEEEeCCCceEEEecCC
Confidence 37777777789999997654
No 311
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.03 E-value=52 Score=21.51 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=19.5
Q ss_pred CCccEE-EcCCCCCCCHHHHHHHHhcC
Q 024366 1 MSRPIF-VGNFEYETRQSELERLFSKY 26 (268)
Q Consensus 1 ~s~tl~-V~nLp~~~t~~~l~~~F~~~ 26 (268)
||+.|. +.||.+-+|+++|...--+|
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQy 27 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQY 27 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHH
Confidence 666554 56788889999999876665
No 312
>PF14893 PNMA: PNMA
Probab=26.97 E-value=70 Score=27.61 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhcc-CCCeEEEEE---------eCCeEEEEeccH
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI---------RRNFAFVQFETQ 138 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~-~g~v~~~~i---------~~~~afV~f~~~ 138 (268)
+.+.|.|.++ |..+++++|++.+.. ..++-...| ....|+|+|...
T Consensus 17 ~~r~lLv~gi-P~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGI-PEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecC-CCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4577999999 899999999887763 222323333 344788888543
No 313
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.61 E-value=63 Score=17.75 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHhcCCCe
Q 024366 13 ETRQSELERLFSKYGRI 29 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v 29 (268)
.+++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999998854
No 314
>PRK10943 cold shock-like protein CspC; Provisional
Probab=26.43 E-value=48 Score=21.18 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=15.0
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
-|.|+...-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36677777689999997644
No 315
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=26.11 E-value=63 Score=24.56 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCC--CCCHHHHHHHHhcCCCee
Q 024366 10 FEY--ETRQSELERLFSKYGRIE 30 (268)
Q Consensus 10 Lp~--~~t~~~l~~~F~~~G~v~ 30 (268)
+|. ..+.+.|..++.+||+|-
T Consensus 90 ~P~~~~~t~e~~~~LL~~yGPLw 112 (166)
T PF12385_consen 90 EPANASYTAEGLANLLREYGPLW 112 (166)
T ss_pred CCcccccCHHHHHHHHHHcCCeE
Confidence 454 789999999999999985
No 316
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=25.99 E-value=54 Score=20.33 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=14.7
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+.....+||+||+=.+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6677666679999998766
No 317
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.64 E-value=1e+02 Score=25.57 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=22.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCe
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRI 29 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v 29 (268)
...|+|||+++|..=|.+++...-.+
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCcc
Confidence 46799999999999999999886544
No 318
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.72 E-value=24 Score=22.50 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcC
Q 024366 17 SELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 17 ~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
++|.+.|..++....+ -+-.+|..|.+.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~--vkL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VKLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--hhhhhccCCCCHHHHHHHHHHhh
Confidence 5777777664433221 23458999999999888876553
No 319
>PRK12450 foldase protein PrsA; Reviewed
Probab=24.67 E-value=1.6e+02 Score=25.07 Aligned_cols=43 Identities=16% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcC--CCCc
Q 024366 13 ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD--NIPF 61 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~--~~~~ 61 (268)
.+|+++|++++..|.+ .+.+ ..|.+.+.+.|..++..+. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4799999999998753 2222 2477889999999999885 5454
No 320
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=24.44 E-value=76 Score=21.33 Aligned_cols=44 Identities=18% Similarity=0.423 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhcCCCeeEE----------------EeeCCEEEEEEcCHHHHHHHHHhcC
Q 024366 14 TRQSELERLFSKYGRIERV----------------DMKSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i----------------~i~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
+..-+++.+++.||.-..| .+.+|+.=|+|-.+++-...++.+.
T Consensus 31 Ld~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 31 LDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred cCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 4455788899999864432 1158999999999999888887653
No 321
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.20 E-value=1.8e+02 Score=19.74 Aligned_cols=40 Identities=25% Similarity=0.563 Sum_probs=29.8
Q ss_pred HHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCc
Q 024366 21 RLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPF 61 (268)
Q Consensus 21 ~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 61 (268)
.-+..||.|..+.-...|+ |-|.+.++.+..++.|....+
T Consensus 20 RqLrkfG~v~Y~Skk~kY~-vlYvn~~~ve~~~~kl~~~kf 59 (90)
T COG4471 20 RQLRKFGDVHYVSKKSKYV-VLYVNEQDVEQIVEKLSRLKF 59 (90)
T ss_pred HHHHhcCCEEEEecceeEE-EEEECHHHHHHHHHHHhhcee
Confidence 3467899998775444555 668899999999988876655
No 322
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.96 E-value=1.8e+02 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHhcCCCeeEE-------Ee------eCCEEEEEEcCHHHHHHHHHhcC
Q 024366 13 ETRQSELERLFSKYGRIERV-------DM------KSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~i-------~i------~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
.+|..+++++|..- +..| .| +.-+-||+..+.+++..|++.|.
T Consensus 2 ~~~~~~~~~~~~~~--~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 2 KLTVKEVKELFKPK--LLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred cchHHHHHHHhCCC--CceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 35778999999752 2222 22 55699999999999999998775
No 323
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.92 E-value=62 Score=26.72 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=29.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHh--cCCCeeEEEeeCCEEEEEEcCHHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFS--KYGRIERVDMKSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~--~~G~v~~i~i~~g~afV~f~~~~~a~~a~~ 54 (268)
.-++|+|||..++..-|.+++. .||.+.- +-+-..|.|.+.+.
T Consensus 98 ~~~vv~NlPy~is~~il~~ll~~~~~g~~~~---------~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 98 PLLVVGNLPYNISSPILRKLLELYRFGRVRM---------VLMVQKEVAERLLA 142 (262)
T ss_dssp EEEEEEEETGTGHHHHHHHHHHHGGGCEEEE---------EEEEEHHHHHHHHT
T ss_pred ceEEEEEecccchHHHHHHHhhcccccccce---------EEEEehhhhhhccC
Confidence 3578999999999999999987 4453332 23334556666653
No 324
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=23.85 E-value=2.6e+02 Score=19.41 Aligned_cols=55 Identities=9% Similarity=0.176 Sum_probs=39.1
Q ss_pred EEEcCCCCCC---CHHHHHHHHhcCC-CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 5 IFVGNFEYET---RQSELERLFSKYG-RIERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 5 l~V~nLp~~~---t~~~l~~~F~~~G-~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
|.|......+ +..+|.+.++.-| .++.+....+...|.|.+.++-.+|.+.|...
T Consensus 34 vqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~~~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 34 VQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEGDSLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred EEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4555543222 2358888888877 45677778889999999999888887766544
No 325
>PRK09890 cold shock protein CspG; Provisional
Probab=23.74 E-value=55 Score=20.96 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=15.0
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 47777777789999996543
No 326
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=23.63 E-value=1.9e+02 Score=20.02 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEe-eCC----EEEEEEcCHHHHHHHHHhcCCC
Q 024366 12 YETRQSELERLFSKYGRIERVDM-KSG----FAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 12 ~~~t~~~l~~~F~~~G~v~~i~i-~~g----~afV~f~~~~~a~~a~~~l~~~ 59 (268)
.+-++++|.-+...=|.|.+|.+ ... .+.+...+..++..+++.|+..
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhcc
Confidence 34457778778776678999998 444 4567788999999999987644
No 327
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=23.47 E-value=95 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYG 27 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G 27 (268)
+.|+|||..++..-|.+++..+|
T Consensus 97 ~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 97 KVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred eEEEcCChhhHHHHHHHHhccCC
Confidence 78999999999999999997544
No 328
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=23.44 E-value=1.6e+02 Score=21.36 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=7.0
Q ss_pred CCEEEEEEcCHH
Q 024366 36 SGFAFVYFEDDR 47 (268)
Q Consensus 36 ~g~afV~f~~~~ 47 (268)
.||-||.|.+++
T Consensus 97 DGFLYi~Ys~e~ 108 (121)
T PTZ00380 97 DGFLYVSVRTEQ 108 (121)
T ss_pred CCeEEEEEcccc
Confidence 466666665554
No 329
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=23.44 E-value=69 Score=18.72 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q 024366 7 VGNFEYETRQSELERLFSKY 26 (268)
Q Consensus 7 V~nLp~~~t~~~l~~~F~~~ 26 (268)
|-+|+..++.++|+..|...
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45788999999999888753
No 330
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=23.08 E-value=41 Score=30.40 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=27.3
Q ss_pred CCHHHHHHhhccCCCe---EEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 106 TRERDIKRHFEPYGNV---LHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 106 ~~~~~l~~~f~~~g~v---~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
+-+++|.+-|.-+-.- ..+....+++=+.|.++++|++..++++
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQ 136 (569)
T ss_pred eehHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHH
Confidence 4456677666533221 1122255566678999999998887764
No 331
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.91 E-value=2.2e+02 Score=21.39 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=34.7
Q ss_pred cEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEe---eCC--EEEEEEcCHHHHHHHH
Q 024366 4 PIFVGNFEYETRQSELERLFSK-YG-RIERVDM---KSG--FAFVYFEDDRDAADAI 53 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~i---~~g--~afV~f~~~~~a~~a~ 53 (268)
.-|+--++..++..+|++.++. |+ .|..|.. +.| -|||.+....+|....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 3566678889999999999987 44 3333333 333 7999998777765543
No 332
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=22.50 E-value=60 Score=20.76 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=14.0
Q ss_pred CCCeeEEEeeCCEEEEEEc
Q 024366 26 YGRIERVDMKSGFAFVYFE 44 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~ 44 (268)
.|.|+...-.+||+||+=.
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~ 24 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPD 24 (70)
T ss_pred eEEEEEEeCCCCcEEEecC
Confidence 3667666668999999744
No 333
>PRK11901 hypothetical protein; Reviewed
Probab=22.07 E-value=1.8e+02 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHhcCCCeeEEEe----eC---CEEEE--EEcCHHHHHHHHHhcCCC
Q 024366 13 ETRQSELERLFSKYGRIERVDM----KS---GFAFV--YFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~i~i----~~---g~afV--~f~~~~~a~~a~~~l~~~ 59 (268)
...++.|..|..+.+ +.++++ .. .|..| .|.+.++|..|+..|-..
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 356888888888876 444555 12 23333 688999999999877643
No 334
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=21.59 E-value=2.1e+02 Score=23.39 Aligned_cols=101 Identities=11% Similarity=0.155 Sum_probs=53.6
Q ss_pred CHHHHHHHHhcCCCeeEEEe--------eCC-------EEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 15 RQSELERLFSKYGRIERVDM--------KSG-------FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 15 t~~~l~~~F~~~G~v~~i~i--------~~g-------~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
.-++++++.++|..+.++.+ ..| +.+=+=.+.++=..|.+.|..... +.+|.|.--.+....
T Consensus 120 ~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~---~~pi~vD~mdN~~~~ 196 (237)
T PF00837_consen 120 KLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFP---QCPIVVDTMDNNFNK 196 (237)
T ss_pred HHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCC---CCCEEEEccCCHHHH
Confidence 35677788888888766554 111 333333455554444444544432 566766633221111
Q ss_pred CCCCCCC-cCCCCCCcEEEEEccCCCCCCHHHHHHhhccC
Q 024366 80 HRDGSKS-MANQRPTKTLFVINFDPIRTRERDIKRHFEPY 118 (268)
Q Consensus 80 ~~~~~~~-~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~ 118 (268)
.-..-+. ---....+.+|.++.-|.....+||++.++++
T Consensus 197 ~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 197 AYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred HhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 0000000 00123466788888877888888888887754
No 335
>PF14268 YoaP: YoaP-like
Probab=21.29 E-value=33 Score=19.88 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=25.9
Q ss_pred EEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 39 AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 39 afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
-+|.+.+.|.|+.|=.-++...+.++|+-|.++...
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils 38 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILS 38 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccC
Confidence 367888888888876666666666778888777643
No 336
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.94 E-value=1.9e+02 Score=24.36 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEe
Q 024366 12 YETRQSELERLFSKYGRIERVDM 34 (268)
Q Consensus 12 ~~~t~~~l~~~F~~~G~v~~i~i 34 (268)
|+|-++++.++|+.|.+=.+|+|
T Consensus 124 PDClpd~VldlL~e~~~r~~vWv 146 (312)
T COG1242 124 PDCLPDDVLDLLAEYNKRYEVWV 146 (312)
T ss_pred CCCCcHHHHHHHHHHhhheEEEE
Confidence 45556666666666654455555
No 337
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.4e+02 Score=18.85 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHH
Q 024366 108 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 146 (268)
Q Consensus 108 ~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~ 146 (268)
--|+++++.+||-| |.|.+.+.+.+.++
T Consensus 4 fYDVqQlLK~~G~i-----------vyfg~r~~~iemm~ 31 (68)
T COG4483 4 FYDVQQLLKKFGII-----------VYFGKRLYDIEMMQ 31 (68)
T ss_pred HHHHHHHHHHCCee-----------eecCCHHHHHHHHH
Confidence 45888999999865 66777766655443
No 338
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=20.59 E-value=2.3e+02 Score=19.10 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 13 ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 13 ~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
++|.++|.++-.+||--. +.++|+..+..|.|..+.
T Consensus 14 ~iT~~eLlkyskqy~i~i--------------t~~QA~~I~~~lr~k~in 49 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI--------------TKKQAEQIANILRGKNIN 49 (85)
T ss_pred cCCHHHHHHHHHHhCCCC--------------CHHHHHHHHHHHhcCCCC
Confidence 578999999999998221 678899999889888764
No 339
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.40 E-value=1.9e+02 Score=26.58 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHh----cCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCC
Q 024366 16 QSELERLFS----KYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDN 58 (268)
Q Consensus 16 ~~~l~~~F~----~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~ 58 (268)
--+|..+|. .+|.|..+.+ .....++.|.+.++|..|+..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 346777775 6888888776 235678899999999999877643
No 340
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=67 Score=25.71 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=18.9
Q ss_pred HHHHHHHh-cCCCeeEEEeeCCEEEEEEcCHH
Q 024366 17 SELERLFS-KYGRIERVDMKSGFAFVYFEDDR 47 (268)
Q Consensus 17 ~~l~~~F~-~~G~v~~i~i~~g~afV~f~~~~ 47 (268)
++|.+-|. .||+-..-.+.+.|+||+|.+--
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHHH
Confidence 45555443 45543333357899999997653
No 341
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=20.05 E-value=3.3e+02 Score=19.28 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHhc-CC---CeeEEEe-eCCEEEEEEcCHHHHHHHHHhcC
Q 024366 9 NFEYETRQSELERLFSK-YG---RIERVDM-KSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 9 nLp~~~t~~~l~~~F~~-~G---~v~~i~i-~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
++...|.-.+|++++.. |. .-.+|.+ .+.-.|+.|.+.+.+.+.+.++.
T Consensus 53 ~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~f~~F~~~~~~k~vv~~lp 106 (108)
T cd01201 53 ELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSIFFAFPDQNAVKKVVYALP 106 (108)
T ss_pred cccceeeHHHHHHHHHHhhhcccceEEEEEeCCceEEEEeCcHHHHHHHHhhcC
Confidence 34446777888888763 21 1123333 56789999999999998887653
Done!