Query 024366
Match_columns 268
No_of_seqs 285 out of 2918
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.4E-35 1.5E-39 235.1 15.7 153 2-166 15-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 3.9E-34 1.3E-38 220.3 16.9 150 3-164 1-165 (166)
3 2qfj_A FBP-interacting repress 100.0 1.5E-34 5.2E-39 232.2 14.4 165 2-169 28-208 (216)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.4E-33 1.2E-37 215.6 19.2 148 2-163 3-168 (168)
5 1l3k_A Heterogeneous nuclear r 100.0 1.9E-33 6.7E-38 222.4 17.2 158 2-169 13-186 (196)
6 2adc_A Polypyrimidine tract-bi 100.0 5.7E-33 1.9E-37 225.2 19.5 162 2-166 34-228 (229)
7 3tyt_A Heterogeneous nuclear r 100.0 3.3E-33 1.1E-37 222.3 17.6 159 2-163 4-204 (205)
8 1fxl_A Paraneoplastic encephal 100.0 5.3E-33 1.8E-37 214.1 17.6 148 2-163 2-167 (167)
9 1qm9_A Polypyrimidine tract-bi 100.0 6.5E-33 2.2E-37 219.9 17.4 162 2-166 3-197 (198)
10 2yh0_A Splicing factor U2AF 65 100.0 8.5E-33 2.9E-37 219.0 17.6 163 1-167 3-195 (198)
11 3pgw_A U1-A; protein-RNA compl 100.0 4.4E-32 1.5E-36 226.7 20.6 160 2-164 9-281 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 2E-32 6.8E-37 212.2 15.6 147 2-163 4-171 (172)
13 3nmr_A Cugbp ELAV-like family 100.0 7.7E-32 2.6E-36 209.2 18.3 151 2-163 3-174 (175)
14 2cjk_A Nuclear polyadenylated 100.0 2.1E-32 7.3E-37 211.0 12.6 148 2-166 3-166 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 1.5E-32 5.1E-37 213.6 11.6 152 2-166 13-174 (175)
16 3sde_A Paraspeckle component 1 100.0 1.3E-30 4.3E-35 215.4 15.6 146 2-167 22-180 (261)
17 2ghp_A U4/U6 snRNA-associated 100.0 2.2E-30 7.6E-35 217.4 17.3 157 2-166 117-291 (292)
18 3smz_A Protein raver-1, ribonu 100.0 4.3E-30 1.5E-34 214.8 18.1 155 2-167 95-265 (284)
19 3smz_A Protein raver-1, ribonu 100.0 4.9E-30 1.7E-34 214.4 18.1 145 2-167 22-176 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-29 3.8E-34 213.1 16.1 144 2-167 41-198 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 1E-25 3.4E-30 197.9 13.4 79 90-169 99-185 (437)
22 4f25_A Polyadenylate-binding p 99.9 5.4E-23 1.8E-27 148.4 9.2 102 2-109 5-112 (115)
23 2i2y_A Fusion protein consists 99.9 3.5E-22 1.2E-26 151.1 9.6 129 35-167 12-149 (150)
24 2kn4_A Immunoglobulin G-bindin 99.9 5.8E-22 2E-26 151.2 9.8 131 35-168 12-152 (158)
25 3r27_A HnRNP L, heterogeneous 99.8 6.2E-21 2.1E-25 132.4 9.1 75 2-76 21-97 (100)
26 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-20 4.1E-25 132.2 8.9 71 3-75 20-98 (99)
27 3pgw_S U1-70K; protein-RNA com 99.8 1.2E-19 4.2E-24 159.3 16.8 72 2-75 102-181 (437)
28 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-20 5E-25 126.0 7.5 72 1-74 6-79 (89)
29 2hvz_A Splicing factor, argini 99.8 1.7E-20 5.8E-25 132.1 8.1 96 3-101 1-99 (101)
30 1sjq_A Polypyrimidine tract-bi 99.8 2E-20 6.9E-25 131.1 8.0 78 2-79 16-95 (105)
31 1x4d_A Matrin 3; structural ge 99.8 1.8E-20 6.1E-25 131.3 7.6 76 2-77 15-93 (102)
32 1wex_A Hypothetical protein (r 99.8 8.1E-20 2.8E-24 128.8 10.6 77 2-78 15-93 (104)
33 2lxi_A RNA-binding protein 10; 99.8 1.1E-20 3.6E-25 130.4 5.8 78 2-81 1-88 (91)
34 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-20 5.3E-25 135.5 6.7 98 1-120 7-109 (115)
35 2dnq_A RNA-binding protein 4B; 99.8 1.1E-19 3.9E-24 125.1 10.6 75 2-78 8-82 (90)
36 2dgu_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 127.3 10.8 77 2-80 11-87 (103)
37 2ad9_A Polypyrimidine tract-bi 99.8 6.9E-20 2.4E-24 131.6 8.7 78 2-79 31-110 (119)
38 2cq1_A PTB-like protein L; RRM 99.8 9.7E-20 3.3E-24 127.6 8.7 77 2-78 15-93 (101)
39 2xnq_A Nuclear polyadenylated 99.8 1.9E-19 6.4E-24 125.7 9.9 74 1-76 21-95 (97)
40 2dnp_A RNA-binding protein 14; 99.8 1.9E-19 6.5E-24 123.9 9.6 74 2-77 9-82 (90)
41 2kvi_A Nuclear polyadenylated 99.8 1.7E-19 5.7E-24 125.8 9.2 75 2-78 10-85 (96)
42 2dgt_A RNA-binding protein 30; 99.8 2.3E-19 8E-24 124.0 9.9 75 2-78 10-84 (92)
43 1x4f_A Matrin 3; structural ge 99.8 7.8E-20 2.7E-24 129.9 7.4 77 2-78 25-104 (112)
44 2lkz_A RNA-binding protein 5; 99.8 6.2E-20 2.1E-24 127.2 6.5 73 3-75 10-94 (95)
45 1whw_A Hypothetical protein ri 99.8 6.6E-19 2.3E-23 123.4 10.8 76 2-79 8-91 (99)
46 3s8s_A Histone-lysine N-methyl 99.8 3.2E-19 1.1E-23 127.3 8.9 73 2-76 6-86 (110)
47 2cpd_A Apobec-1 stimulating pr 99.8 5.8E-19 2E-23 123.7 10.1 74 2-77 15-90 (99)
48 1wf1_A RNA-binding protein RAL 99.8 3.4E-19 1.2E-23 127.4 8.9 74 1-76 26-100 (110)
49 2dnz_A Probable RNA-binding pr 99.8 9.7E-19 3.3E-23 121.6 11.0 75 2-78 5-87 (95)
50 3md1_A Nuclear and cytoplasmic 99.8 4.5E-19 1.6E-23 120.1 9.0 73 2-76 1-81 (83)
51 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.1E-19 2.1E-23 124.5 10.0 75 2-78 15-95 (103)
52 1why_A Hypothetical protein ri 99.8 8.5E-19 2.9E-23 122.4 10.6 75 2-76 17-93 (97)
53 4a8x_A RNA-binding protein wit 99.8 7.3E-19 2.5E-23 120.4 10.0 73 2-76 4-85 (88)
54 1x4c_A Splicing factor, argini 99.8 8.5E-19 2.9E-23 124.9 10.6 75 2-78 15-95 (108)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.9E-19 2E-23 120.1 9.3 71 2-74 7-85 (85)
56 1x4a_A Splicing factor, argini 99.8 6.4E-19 2.2E-23 125.8 9.8 75 2-78 22-101 (109)
57 2dgo_A Cytotoxic granule-assoc 99.8 1E-18 3.6E-23 125.9 10.9 77 2-80 15-99 (115)
58 2dnm_A SRP46 splicing factor; 99.8 6.8E-19 2.3E-23 124.3 9.6 75 2-78 13-95 (103)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.1E-19 1.7E-23 120.9 8.7 73 2-76 6-86 (87)
60 2cq3_A RNA-binding protein 9; 99.8 1.2E-18 4.1E-23 123.0 10.8 76 2-79 15-96 (103)
61 2dgu_A Heterogeneous nuclear r 99.8 2.7E-18 9.3E-23 121.2 12.5 81 89-170 7-87 (103)
62 2dgs_A DAZ-associated protein 99.8 1.4E-18 4.7E-23 121.8 10.8 74 2-78 10-91 (99)
63 2jvo_A Nucleolar protein 3; nu 99.8 4.7E-19 1.6E-23 126.1 8.5 73 2-76 31-103 (108)
64 1x5s_A Cold-inducible RNA-bind 99.8 7.6E-19 2.6E-23 123.8 9.5 75 2-78 12-94 (102)
65 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.8E-19 2E-23 135.4 9.6 127 41-168 11-154 (165)
66 1x5u_A Splicing factor 3B subu 99.8 1.2E-18 4E-23 123.5 10.4 75 2-78 15-97 (105)
67 2dgx_A KIAA0430 protein; RRM d 99.8 7.9E-19 2.7E-23 122.3 9.2 74 2-77 9-91 (96)
68 2x1f_A MRNA 3'-END-processing 99.8 9.9E-19 3.4E-23 121.8 9.7 74 2-77 2-83 (96)
69 2d9p_A Polyadenylate-binding p 99.8 9.1E-19 3.1E-23 123.6 9.6 76 2-79 15-96 (103)
70 2cpj_A Non-POU domain-containi 99.8 8.1E-19 2.8E-23 123.0 9.2 74 2-77 15-90 (99)
71 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.4E-23 123.3 10.3 75 2-78 15-99 (105)
72 2do4_A Squamous cell carcinoma 99.8 1.1E-18 3.8E-23 122.5 9.6 73 2-76 17-96 (100)
73 2ytc_A PRE-mRNA-splicing facto 99.8 8.5E-19 2.9E-23 119.3 8.7 71 2-74 12-85 (85)
74 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7E-19 2.4E-23 124.0 8.5 76 2-79 12-95 (102)
75 1whx_A Hypothetical protein ri 99.8 1.2E-18 4.3E-23 124.6 9.9 72 3-76 11-84 (111)
76 2fy1_A RNA-binding motif prote 99.8 2E-18 6.9E-23 124.4 11.0 76 2-79 7-89 (116)
77 3ns6_A Eukaryotic translation 99.8 4.2E-19 1.4E-23 124.6 7.1 74 1-76 5-93 (100)
78 2cq0_A Eukaryotic translation 99.8 7.1E-19 2.4E-23 124.2 8.3 75 2-78 15-97 (103)
79 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-18 3.8E-23 121.1 9.1 71 2-74 16-94 (94)
80 2cqh_A IGF-II mRNA-binding pro 99.8 6.9E-19 2.4E-23 121.9 8.0 75 2-78 8-85 (93)
81 1x5t_A Splicing factor 3B subu 99.8 7.9E-19 2.7E-23 122.3 8.2 75 2-78 5-88 (96)
82 1p27_B RNA-binding protein 8A; 99.8 1.2E-18 4.3E-23 123.6 9.2 73 2-76 23-103 (106)
83 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.9E-23 120.0 9.1 74 2-77 8-87 (92)
84 2cph_A RNA binding motif prote 99.8 3E-18 1E-22 121.8 10.9 75 2-78 15-99 (107)
85 1s79_A Lupus LA protein; RRM, 99.8 1.3E-18 4.5E-23 122.6 8.7 71 2-75 11-88 (103)
86 2e5j_A Methenyltetrahydrofolat 99.8 1.2E-18 4.3E-23 121.6 8.5 73 1-76 18-94 (97)
87 1x4h_A RNA-binding protein 28; 99.8 2.9E-18 9.9E-23 122.7 10.5 75 2-78 15-103 (111)
88 2cpf_A RNA binding motif prote 99.8 2.1E-18 7.2E-23 120.6 9.5 75 2-78 5-90 (98)
89 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-18 4.7E-23 125.2 8.7 75 2-78 25-107 (115)
90 2dnq_A RNA-binding protein 4B; 99.8 5.2E-18 1.8E-22 116.7 11.2 79 90-169 5-83 (90)
91 2cqc_A Arginine/serine-rich sp 99.8 1.3E-18 4.5E-23 120.9 8.2 72 2-75 15-94 (95)
92 2div_A TRNA selenocysteine ass 99.8 1.1E-18 3.7E-23 122.3 7.8 74 1-76 8-94 (99)
93 1x4g_A Nucleolysin TIAR; struc 99.8 2E-18 6.7E-23 123.2 9.3 75 2-78 25-101 (109)
94 2dgp_A Bruno-like 4, RNA bindi 99.8 2.3E-18 7.8E-23 122.2 9.3 77 2-78 13-98 (106)
95 2jvr_A Nucleolar protein 3; RN 99.8 9.7E-19 3.3E-23 124.5 7.4 73 2-76 28-105 (111)
96 2la4_A Nuclear and cytoplasmic 99.8 7E-19 2.4E-23 123.8 6.5 72 2-75 27-100 (101)
97 2do0_A HnRNP M, heterogeneous 99.8 5.4E-18 1.9E-22 121.9 11.3 74 2-77 15-95 (114)
98 1x4c_A Splicing factor, argini 99.8 8.8E-18 3E-22 119.6 12.2 77 90-167 12-94 (108)
99 2ywk_A Putative RNA-binding pr 99.8 1.5E-18 5E-23 120.7 7.9 71 2-74 16-93 (95)
100 3ex7_B RNA-binding protein 8A; 99.8 2.8E-18 9.4E-23 125.7 9.7 75 2-78 22-104 (126)
101 2lea_A Serine/arginine-rich sp 99.8 1.1E-18 3.9E-23 129.1 7.7 118 37-169 5-130 (135)
102 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-18 8.5E-23 122.9 9.2 73 2-76 26-106 (110)
103 2jrs_A RNA-binding protein 39; 99.8 2.5E-18 8.4E-23 122.4 9.0 73 2-76 26-106 (108)
104 2dgt_A RNA-binding protein 30; 99.8 8.2E-18 2.8E-22 116.2 11.4 79 89-168 6-84 (92)
105 2a3j_A U1 small nuclear ribonu 99.8 2.8E-18 9.6E-23 125.2 9.4 74 2-77 29-111 (127)
106 3p5t_L Cleavage and polyadenyl 99.8 5E-19 1.7E-23 121.8 5.1 73 3-77 2-84 (90)
107 2err_A Ataxin-2-binding protei 99.8 1.8E-18 6.1E-23 123.4 8.0 73 2-76 29-107 (109)
108 4fxv_A ELAV-like protein 1; RN 99.8 3E-18 1E-22 119.9 9.0 73 92-165 18-98 (99)
109 1x4d_A Matrin 3; structural ge 99.8 7.1E-18 2.4E-22 118.0 10.7 79 89-168 11-94 (102)
110 3ulh_A THO complex subunit 4; 99.8 2.7E-18 9.4E-23 122.0 8.8 71 2-74 29-106 (107)
111 3r27_A HnRNP L, heterogeneous 99.8 5.7E-18 1.9E-22 117.5 10.0 78 89-167 17-98 (100)
112 3ex7_B RNA-binding protein 8A; 99.8 6.1E-18 2.1E-22 123.8 10.7 80 89-169 18-105 (126)
113 2kvi_A Nuclear polyadenylated 99.8 4.3E-18 1.5E-22 118.5 9.4 80 89-169 6-86 (96)
114 2kxn_B Transformer-2 protein h 99.8 2.2E-18 7.6E-23 126.5 8.3 73 2-76 46-126 (129)
115 1nu4_A U1A RNA binding domain; 99.8 3.9E-18 1.3E-22 119.0 9.1 74 2-77 8-90 (97)
116 2cpd_A Apobec-1 stimulating pr 99.8 1.6E-17 5.6E-22 116.3 12.3 79 89-168 11-91 (99)
117 2nlw_A Eukaryotic translation 99.8 2.7E-18 9.1E-23 121.6 8.3 74 1-76 14-100 (105)
118 1p1t_A Cleavage stimulation fa 99.8 2.3E-18 7.9E-23 121.7 7.9 74 2-77 8-89 (104)
119 2la6_A RNA-binding protein FUS 99.7 3.8E-18 1.3E-22 119.5 8.5 71 2-74 13-99 (99)
120 2cq2_A Hypothetical protein LO 99.7 3.2E-18 1.1E-22 121.6 8.1 77 2-78 25-108 (114)
121 2dhg_A TRNA selenocysteine ass 99.7 5.2E-18 1.8E-22 119.9 9.2 75 2-78 9-92 (104)
122 2cqd_A RNA-binding region cont 99.7 6E-18 2.1E-22 122.0 9.7 73 2-77 17-97 (116)
123 2dnp_A RNA-binding protein 14; 99.7 1E-17 3.5E-22 115.2 10.2 79 89-168 5-83 (90)
124 1x4a_A Splicing factor, argini 99.7 2.6E-17 8.9E-22 117.3 12.7 80 88-168 17-101 (109)
125 3ucg_A Polyadenylate-binding p 99.7 5.1E-18 1.7E-22 116.5 8.6 71 2-75 6-84 (89)
126 2cpe_A RNA-binding protein EWS 99.7 3.9E-18 1.3E-22 122.4 8.2 75 2-78 15-105 (113)
127 2krb_A Eukaryotic translation 99.7 2.8E-18 9.5E-23 115.7 6.9 67 2-70 1-80 (81)
128 2cpi_A CCR4-NOT transcription 99.7 1.7E-18 5.8E-23 123.9 6.0 74 2-77 15-102 (111)
129 2khc_A Testis-specific RNP-typ 99.7 3.9E-18 1.3E-22 123.4 7.7 71 2-74 40-118 (118)
130 1wi8_A EIF-4B, eukaryotic tran 99.7 9E-18 3.1E-22 118.7 9.4 74 2-79 15-97 (104)
131 3beg_B Splicing factor, argini 99.7 7.5E-18 2.6E-22 121.3 9.0 72 2-75 16-93 (115)
132 2dnz_A Probable RNA-binding pr 99.7 3.2E-17 1.1E-21 113.9 11.9 78 91-169 3-88 (95)
133 2cq1_A PTB-like protein L; RRM 99.7 4.6E-17 1.6E-21 113.9 12.7 81 89-170 11-95 (101)
134 2dis_A Unnamed protein product 99.7 1.6E-17 5.4E-22 118.4 10.5 76 2-79 8-95 (109)
135 2fy1_A RNA-binding motif prote 99.7 2.9E-17 1E-21 118.3 11.9 78 90-168 4-88 (116)
136 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.3E-18 3.2E-22 127.5 9.7 73 2-76 39-119 (156)
137 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.3E-17 4.5E-22 126.7 10.5 79 89-168 35-121 (156)
138 1u6f_A Tcubp1, RNA-binding pro 99.7 9.2E-18 3.1E-22 125.0 9.4 76 2-79 42-125 (139)
139 1wex_A Hypothetical protein (r 99.7 4.3E-17 1.5E-21 114.8 12.3 80 89-169 11-94 (104)
140 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.6E-22 121.2 10.4 75 2-78 35-116 (124)
141 2cq4_A RNA binding motif prote 99.7 5E-18 1.7E-22 122.1 7.6 73 2-77 25-105 (114)
142 2dng_A Eukaryotic translation 99.7 1E-17 3.4E-22 118.2 8.9 73 2-78 15-95 (103)
143 2mss_A Protein (musashi1); RNA 99.7 4.6E-18 1.6E-22 112.8 6.6 67 4-73 1-75 (75)
144 1wf1_A RNA-binding protein RAL 99.7 2.1E-17 7.2E-22 118.0 10.5 78 90-168 24-102 (110)
145 2diu_A KIAA0430 protein; struc 99.7 2.1E-17 7.2E-22 111.7 9.7 74 2-79 8-87 (96)
146 1x5p_A Negative elongation fac 99.7 2E-17 6.9E-22 115.3 9.9 73 2-78 15-89 (97)
147 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.2E-17 1.8E-21 114.5 12.0 80 89-169 11-96 (103)
148 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.6E-22 118.3 9.4 73 2-77 25-105 (109)
149 2lea_A Serine/arginine-rich sp 99.7 6.4E-18 2.2E-22 125.1 7.6 74 2-77 47-128 (135)
150 2ek1_A RNA-binding protein 12; 99.7 2.2E-18 7.7E-23 119.7 4.8 71 2-74 15-93 (95)
151 3d2w_A TAR DNA-binding protein 99.7 1.4E-17 4.8E-22 114.2 8.7 71 2-76 11-84 (89)
152 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.3E-22 116.7 10.4 79 89-168 21-104 (112)
153 2cq3_A RNA-binding protein 9; 99.7 9.8E-17 3.4E-21 113.1 13.3 81 88-169 10-96 (103)
154 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.5E-18 1.9E-22 113.0 6.5 68 3-73 1-76 (77)
155 2dh8_A DAZ-associated protein 99.7 4.3E-18 1.5E-22 120.6 6.3 75 2-79 16-98 (105)
156 1wg1_A KIAA1579 protein, homol 99.7 7E-18 2.4E-22 115.5 7.1 72 2-76 5-78 (88)
157 2cqp_A RNA-binding protein 12; 99.7 3.7E-18 1.3E-22 119.3 5.8 72 2-75 15-94 (98)
158 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-17 5.3E-22 125.3 9.5 75 3-77 47-125 (164)
159 3n9u_C Cleavage and polyadenyl 99.7 1.1E-17 3.8E-22 126.7 8.7 72 3-76 56-137 (156)
160 1x5s_A Cold-inducible RNA-bind 99.7 4.6E-17 1.6E-21 114.6 11.4 80 89-169 8-95 (102)
161 2dnm_A SRP46 splicing factor; 99.7 3.2E-17 1.1E-21 115.6 10.5 80 89-169 9-96 (103)
162 2xnq_A Nuclear polyadenylated 99.7 3.1E-17 1E-21 114.4 10.3 78 88-166 17-95 (97)
163 2dgs_A DAZ-associated protein 99.7 8.1E-17 2.8E-21 112.7 12.5 79 89-169 6-92 (99)
164 3s8s_A Histone-lysine N-methyl 99.7 2E-17 6.9E-22 117.9 9.5 75 91-166 4-86 (110)
165 1sjq_A Polypyrimidine tract-bi 99.7 9.1E-18 3.1E-22 117.6 7.5 79 90-169 13-95 (105)
166 3beg_B Splicing factor, argini 99.7 1.7E-17 5.9E-22 119.4 9.2 72 92-164 15-92 (115)
167 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.6E-22 111.6 7.9 72 92-164 6-79 (89)
168 2cpx_A Hypothetical protein FL 99.7 9.6E-18 3.3E-22 120.8 7.8 75 2-78 25-107 (115)
169 1whw_A Hypothetical protein ri 99.7 6.5E-17 2.2E-21 113.2 11.9 79 90-169 5-91 (99)
170 1u6f_A Tcubp1, RNA-binding pro 99.7 6.7E-17 2.3E-21 120.3 12.6 81 88-169 37-125 (139)
171 2cq0_A Eukaryotic translation 99.7 5E-17 1.7E-21 114.6 11.3 80 89-169 11-98 (103)
172 2d9p_A Polyadenylate-binding p 99.7 6.8E-17 2.3E-21 113.9 11.9 80 89-169 11-96 (103)
173 2i2y_A Fusion protein consists 99.7 1.4E-17 4.7E-22 125.7 8.8 73 2-76 73-148 (150)
174 1x4e_A RNA binding motif, sing 99.7 1.7E-18 5.9E-23 117.8 3.4 71 2-74 5-83 (85)
175 1x5u_A Splicing factor 3B subu 99.7 6.9E-17 2.4E-21 114.3 11.9 81 88-169 10-98 (105)
176 2fc9_A NCL protein; structure 99.7 9.6E-18 3.3E-22 117.9 7.2 74 2-77 15-92 (101)
177 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.3E-18 2.8E-22 118.0 6.8 71 2-76 19-98 (100)
178 1why_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 113.6 10.4 78 89-167 13-94 (97)
179 2dgo_A Cytotoxic granule-assoc 99.7 1.3E-16 4.6E-21 114.7 13.3 80 89-169 11-98 (115)
180 3s7r_A Heterogeneous nuclear r 99.7 1.8E-17 6E-22 113.3 8.2 69 2-73 11-87 (87)
181 3zzy_A Polypyrimidine tract-bi 99.7 2.5E-17 8.5E-22 119.7 9.3 73 4-76 30-106 (130)
182 1x5t_A Splicing factor 3B subu 99.7 2.9E-17 9.9E-22 114.3 9.4 78 91-169 3-89 (96)
183 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-17 4.9E-22 127.6 8.5 74 2-77 72-153 (165)
184 2kn4_A Immunoglobulin G-bindin 99.7 2.7E-17 9.3E-22 125.2 9.9 75 2-78 70-152 (158)
185 1wg5_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 115.5 9.9 72 2-76 15-94 (104)
186 2ki2_A SS-DNA binding protein 99.7 2.9E-18 1E-22 117.9 4.1 72 3-77 2-81 (90)
187 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4E-17 1.4E-21 114.9 10.0 80 89-169 8-95 (102)
188 2e5i_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 118.1 10.1 73 5-77 28-103 (124)
189 2cpj_A Non-POU domain-containi 99.7 7.7E-17 2.6E-21 112.8 11.3 80 89-169 11-92 (99)
190 2dgw_A Probable RNA-binding pr 99.7 2.2E-17 7.5E-22 113.8 8.2 71 2-76 10-87 (91)
191 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-17 5.5E-22 118.2 7.7 74 92-166 27-105 (111)
192 2dnh_A Bruno-like 5, RNA bindi 99.7 1.1E-16 3.7E-21 113.3 12.0 80 89-169 11-100 (105)
193 2ad9_A Polypyrimidine tract-bi 99.7 4.5E-17 1.5E-21 116.9 9.9 80 89-169 27-110 (119)
194 2dgx_A KIAA0430 protein; RRM d 99.7 5.6E-17 1.9E-21 112.9 10.2 78 90-168 6-92 (96)
195 1x4b_A Heterogeneous nuclear r 99.7 1.9E-17 6.6E-22 119.4 8.1 73 3-78 28-108 (116)
196 1x5o_A RNA binding motif, sing 99.7 2.7E-17 9.3E-22 118.2 8.8 74 2-75 25-111 (114)
197 2e44_A Insulin-like growth fac 99.7 3E-17 1E-21 114.3 8.7 73 2-76 15-92 (96)
198 2cph_A RNA binding motif prote 99.7 1.4E-16 4.6E-21 113.2 12.1 81 88-169 10-100 (107)
199 2cqg_A TDP-43, TAR DNA-binding 99.7 4.3E-17 1.5E-21 115.0 9.3 73 2-78 15-95 (103)
200 4f25_A Polyadenylate-binding p 99.7 3.7E-17 1.3E-21 117.6 9.1 74 93-167 5-84 (115)
201 2jvo_A Nucleolar protein 3; nu 99.7 3.2E-17 1.1E-21 116.6 8.6 80 88-168 26-105 (108)
202 2cqh_A IGF-II mRNA-binding pro 99.7 3.4E-17 1.2E-21 113.3 8.5 78 90-168 5-85 (93)
203 2do4_A Squamous cell carcinoma 99.7 1E-16 3.6E-21 112.3 11.2 79 89-168 13-98 (100)
204 4a8x_A RNA-binding protein wit 99.7 8.8E-17 3E-21 109.9 10.6 75 92-167 3-86 (88)
205 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.6E-17 2.6E-21 109.5 10.0 74 90-164 4-85 (85)
206 2cpz_A CUG triplet repeat RNA- 99.7 6.7E-17 2.3E-21 116.3 10.1 80 89-169 21-108 (115)
207 2jwn_A Embryonic polyadenylate 99.7 3.1E-17 1E-21 119.7 8.4 72 2-76 36-115 (124)
208 2e5g_A U6 snRNA-specific termi 99.7 3.8E-17 1.3E-21 113.3 8.4 73 2-77 8-83 (94)
209 1fjc_A Nucleolin RBD2, protein 99.7 1.4E-17 4.9E-22 115.9 6.3 73 2-76 16-91 (96)
210 2m2b_A RNA-binding protein 10; 99.7 1E-17 3.5E-22 123.5 5.6 73 2-77 23-109 (131)
211 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.2E-17 1.1E-21 122.1 8.2 70 2-73 63-140 (140)
212 2cqd_A RNA-binding region cont 99.7 2.7E-16 9.2E-21 113.3 12.8 80 88-169 12-99 (116)
213 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.8E-17 2E-21 110.6 8.8 75 91-166 4-86 (87)
214 2f3j_A RNA and export factor b 99.7 5.6E-17 1.9E-21 125.5 9.4 73 2-76 88-167 (177)
215 1x4h_A RNA-binding protein 28; 99.7 2.3E-16 7.9E-21 112.7 12.0 80 89-169 11-104 (111)
216 2fc8_A NCL protein; structure 99.7 3.9E-17 1.3E-21 115.0 7.8 75 2-78 15-94 (102)
217 1fj7_A Nucleolin RBD1, protein 99.7 7.3E-18 2.5E-22 118.5 4.0 72 2-76 17-95 (101)
218 2hzc_A Splicing factor U2AF 65 99.7 4.1E-17 1.4E-21 111.4 7.6 68 2-72 6-86 (87)
219 2x1f_A MRNA 3'-END-processing 99.7 9.5E-17 3.2E-21 111.7 9.6 75 92-167 1-83 (96)
220 1wez_A HnRNP H', FTP-3, hetero 99.7 3.1E-17 1.1E-21 115.4 7.1 71 2-76 15-92 (102)
221 2dgv_A HnRNP M, heterogeneous 99.7 7.7E-17 2.7E-21 111.2 8.9 78 90-168 5-88 (92)
222 2cpy_A RNA-binding protein 12; 99.7 2.1E-17 7E-22 118.8 6.2 73 2-77 15-95 (114)
223 2lxi_A RNA-binding protein 10; 99.7 1.8E-17 6E-22 114.2 5.5 75 93-168 1-85 (91)
224 2cpf_A RNA binding motif prote 99.7 1.1E-16 3.7E-21 111.8 9.7 78 91-169 3-91 (98)
225 2dhg_A TRNA selenocysteine ass 99.7 7.7E-17 2.6E-21 113.9 9.0 80 89-169 5-93 (104)
226 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-16 5.6E-21 110.0 10.5 75 89-164 12-94 (94)
227 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-16 4E-21 113.9 10.0 80 89-169 21-102 (109)
228 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.3E-21 113.1 10.1 78 89-167 19-104 (106)
229 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-16 4.9E-21 113.6 10.4 79 89-168 22-108 (110)
230 2do0_A HnRNP M, heterogeneous 99.7 4.5E-16 1.5E-20 111.8 13.0 78 89-167 11-95 (114)
231 1wi8_A EIF-4B, eukaryotic tran 99.7 2.8E-16 9.5E-21 111.0 11.7 78 89-169 11-97 (104)
232 1iqt_A AUF1, heterogeneous nuc 99.7 2E-17 7E-22 109.6 5.4 67 4-73 1-75 (75)
233 1wf0_A TDP-43, TAR DNA-binding 99.7 4.8E-17 1.6E-21 111.3 7.4 73 2-78 5-80 (88)
234 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.4E-21 108.4 9.4 75 89-164 8-85 (85)
235 3md1_A Nuclear and cytoplasmic 99.7 1.3E-16 4.3E-21 107.9 9.3 74 93-167 1-82 (83)
236 3q2s_C Cleavage and polyadenyl 99.7 4.1E-17 1.4E-21 131.4 8.0 70 3-74 69-148 (229)
237 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-16 5.9E-21 112.4 10.4 79 89-168 9-98 (106)
238 2db1_A Heterogeneous nuclear r 99.7 2.1E-17 7E-22 119.5 5.6 72 2-76 17-98 (118)
239 2lkz_A RNA-binding protein 5; 99.7 5.6E-17 1.9E-21 112.2 7.5 75 90-165 6-94 (95)
240 2bz2_A Negative elongation fac 99.7 8.3E-17 2.8E-21 116.7 8.5 72 2-77 39-112 (121)
241 2dng_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 110.3 11.3 77 89-168 11-95 (103)
242 2cqc_A Arginine/serine-rich sp 99.7 1.3E-16 4.5E-21 110.7 8.9 77 88-165 10-94 (95)
243 2cpx_A Hypothetical protein FL 99.7 2.5E-16 8.6E-21 113.3 10.7 80 89-169 21-108 (115)
244 1wel_A RNA-binding protein 12; 99.7 2E-17 7E-22 120.7 4.9 72 2-76 25-104 (124)
245 2cpi_A CCR4-NOT transcription 99.7 2E-16 6.7E-21 113.1 9.9 78 89-167 11-102 (111)
246 2e5j_A Methenyltetrahydrofolat 99.7 2.7E-16 9.3E-21 109.6 10.3 77 89-167 15-95 (97)
247 3u1l_A PRE-mRNA-splicing facto 99.7 7.8E-17 2.7E-21 129.4 8.5 76 2-77 134-230 (240)
248 2cpe_A RNA-binding protein EWS 99.7 2.8E-16 9.7E-21 112.6 10.6 79 89-168 11-105 (113)
249 3egn_A RNA-binding protein 40; 99.7 3.4E-17 1.1E-21 122.6 5.9 74 2-77 45-131 (143)
250 2hgl_A HNRPF protein, heteroge 99.7 3.6E-17 1.2E-21 120.7 5.6 71 2-75 44-124 (136)
251 1x5p_A Negative elongation fac 99.7 6.9E-16 2.4E-20 107.5 11.9 77 89-168 11-89 (97)
252 2a3j_A U1 small nuclear ribonu 99.7 2.2E-16 7.5E-21 115.1 9.7 78 89-167 25-111 (127)
253 2jrs_A RNA-binding protein 39; 99.7 3.7E-16 1.3E-20 111.0 10.5 79 88-167 21-107 (108)
254 2dnn_A RNA-binding protein 12; 99.7 1.2E-16 3.9E-21 113.5 7.7 70 3-76 17-93 (109)
255 1nu4_A U1A RNA binding domain; 99.7 2.6E-16 9E-21 109.6 9.4 78 89-167 4-90 (97)
256 1whx_A Hypothetical protein ri 99.7 2.2E-16 7.5E-21 112.8 9.2 75 92-167 9-85 (111)
257 2fc9_A NCL protein; structure 99.7 4.2E-16 1.4E-20 109.4 10.5 79 89-168 11-93 (101)
258 2hvz_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 111.5 8.3 73 94-167 1-76 (101)
259 2la6_A RNA-binding protein FUS 99.7 3.2E-16 1.1E-20 109.6 9.7 76 88-164 8-99 (99)
260 2kxn_B Transformer-2 protein h 99.7 1.9E-16 6.6E-21 116.1 8.7 79 88-167 41-127 (129)
261 2err_A Ataxin-2-binding protei 99.7 2.4E-16 8.3E-21 112.2 9.0 77 89-166 25-107 (109)
262 3ulh_A THO complex subunit 4; 99.7 3.1E-16 1.1E-20 111.3 9.5 75 89-164 25-106 (107)
263 2fc8_A NCL protein; structure 99.7 5.4E-16 1.9E-20 109.0 10.5 80 88-168 10-94 (102)
264 2lmi_A GRSF-1, G-rich sequence 99.7 4.4E-17 1.5E-21 115.7 4.5 72 2-76 11-92 (107)
265 2cq2_A Hypothetical protein LO 99.7 2.5E-16 8.4E-21 111.9 8.3 78 89-167 21-107 (114)
266 2ywk_A Putative RNA-binding pr 99.7 2E-16 6.9E-21 109.7 7.8 76 89-165 12-94 (95)
267 3ns6_A Eukaryotic translation 99.7 1.5E-16 5.2E-21 111.5 7.2 74 92-166 5-93 (100)
268 2lcw_A RNA-binding protein FUS 99.5 6.2E-18 2.1E-22 122.0 0.0 76 2-79 7-98 (116)
269 2la4_A Nuclear and cytoplasmic 99.7 1.6E-16 5.3E-21 111.7 7.1 74 91-165 25-100 (101)
270 2khc_A Testis-specific RNP-typ 99.7 5.9E-16 2E-20 111.9 10.4 76 88-164 35-118 (118)
271 2div_A TRNA selenocysteine ass 99.7 2.2E-16 7.5E-21 110.5 7.3 77 90-167 6-95 (99)
272 2hgn_A Heterogeneous nuclear r 99.7 7.9E-17 2.7E-21 119.3 5.1 71 2-76 46-123 (139)
273 2diu_A KIAA0430 protein; struc 99.6 6.2E-16 2.1E-20 104.5 8.9 76 90-168 5-86 (96)
274 2xs2_A Deleted in azoospermia- 99.6 1.3E-16 4.5E-21 112.2 5.8 72 2-77 9-87 (102)
275 2cqp_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 109.4 7.6 78 89-167 11-96 (98)
276 2e5i_A Heterogeneous nuclear r 99.6 2.3E-15 8E-20 108.8 12.2 76 91-167 21-103 (124)
277 2kt5_A RNA and export factor-b 99.6 1.7E-15 5.9E-20 110.4 11.6 79 89-168 31-116 (124)
278 3lqv_A PRE-mRNA branch site pr 99.6 9.2E-16 3.1E-20 110.3 9.7 77 90-167 5-86 (115)
279 3p5t_L Cleavage and polyadenyl 99.6 9.4E-17 3.2E-21 110.3 4.3 74 94-168 2-85 (90)
280 2bz2_A Negative elongation fac 99.6 7.3E-16 2.5E-20 111.7 9.1 77 89-168 35-113 (121)
281 1x4b_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 111.9 8.2 76 91-168 25-108 (116)
282 4f02_A Polyadenylate-binding p 99.6 4E-16 1.4E-20 124.5 8.5 72 3-76 104-181 (213)
283 1s79_A Lupus LA protein; RRM, 99.6 6E-16 2.1E-20 108.8 8.3 73 91-165 9-88 (103)
284 2dh8_A DAZ-associated protein 99.6 3.2E-16 1.1E-20 110.9 6.8 79 89-169 12-98 (105)
285 2dha_A FLJ20171 protein; RRM d 99.6 1.4E-16 4.9E-21 115.4 4.9 71 2-75 23-104 (123)
286 3zzy_A Polypyrimidine tract-bi 99.6 1.1E-15 3.6E-20 111.1 9.4 74 93-167 28-107 (130)
287 2dgw_A Probable RNA-binding pr 99.6 1.8E-15 6E-20 104.1 9.9 75 90-167 7-88 (91)
288 3ucg_A Polyadenylate-binding p 99.6 8.6E-16 2.9E-20 105.2 8.3 72 93-166 6-85 (89)
289 2dis_A Unnamed protein product 99.6 2.4E-15 8.1E-20 107.1 10.7 78 90-168 5-94 (109)
290 2nlw_A Eukaryotic translation 99.6 1E-15 3.5E-20 108.2 8.5 76 90-166 12-100 (105)
291 1fjc_A Nucleolin RBD2, protein 99.6 9.3E-16 3.2E-20 106.6 8.2 78 89-167 12-92 (96)
292 2hgm_A HNRPF protein, heteroge 99.6 5.3E-16 1.8E-20 112.7 7.2 70 2-75 42-120 (126)
293 1wez_A HnRNP H', FTP-3, hetero 99.6 1.9E-15 6.3E-20 106.2 9.7 76 89-167 11-93 (102)
294 2j8a_A Histone-lysine N-methyl 99.6 3.5E-16 1.2E-20 111.7 5.8 72 1-74 1-94 (136)
295 2cqg_A TDP-43, TAR DNA-binding 99.6 3.3E-15 1.1E-19 105.2 10.8 78 89-169 11-96 (103)
296 2cq4_A RNA binding motif prote 99.6 6E-16 2.1E-20 111.1 7.1 74 92-167 24-105 (114)
297 1x5o_A RNA binding motif, sing 99.6 4.2E-15 1.4E-19 106.6 11.4 77 89-166 21-112 (114)
298 2ek1_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 108.7 5.3 74 91-165 13-94 (95)
299 1wg5_A Heterogeneous nuclear r 99.6 5.1E-15 1.7E-19 104.4 11.4 77 89-167 11-95 (104)
300 1p1t_A Cleavage stimulation fa 99.6 7.9E-16 2.7E-20 108.6 7.1 75 92-167 7-89 (104)
301 1x4e_A RNA binding motif, sing 99.6 2.9E-16 9.9E-21 106.6 4.7 72 91-163 3-82 (85)
302 2dnl_A Cytoplasmic polyadenyla 99.6 8.2E-16 2.8E-20 110.4 7.2 67 2-73 8-85 (114)
303 2e44_A Insulin-like growth fac 99.6 3.2E-15 1.1E-19 103.9 10.0 77 90-167 12-93 (96)
304 2qfj_A FBP-interacting repress 99.6 2.1E-15 7.2E-20 120.3 10.3 74 2-77 125-206 (216)
305 2hgn_A Heterogeneous nuclear r 99.6 2.5E-16 8.5E-21 116.6 4.5 117 37-168 2-125 (139)
306 3s7r_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 102.7 8.8 73 89-163 7-87 (87)
307 2jwn_A Embryonic polyadenylate 99.6 2E-15 7E-20 110.0 9.2 74 92-167 35-116 (124)
308 1sjr_A Polypyrimidine tract-bi 99.6 1.7E-15 5.8E-20 114.1 8.8 74 93-167 46-125 (164)
309 3md3_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 116.0 8.7 71 2-74 87-165 (166)
310 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.9E-20 103.9 7.6 74 92-167 4-79 (88)
311 2m2b_A RNA-binding protein 10; 99.6 1.3E-15 4.5E-20 112.1 7.9 77 89-167 19-109 (131)
312 2rs2_A Musashi-1, RNA-binding 99.6 3.1E-15 1.1E-19 106.4 9.5 78 89-168 21-106 (109)
313 2e5g_A U6 snRNA-specific termi 99.6 3.6E-15 1.2E-19 103.2 9.6 75 91-167 6-83 (94)
314 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.1E-15 1.4E-19 110.6 10.4 75 88-163 58-140 (140)
315 3n9u_C Cleavage and polyadenyl 99.6 1.6E-15 5.5E-20 114.8 8.2 74 92-166 54-137 (156)
316 2g4b_A Splicing factor U2AF 65 99.6 1.5E-15 5.2E-20 116.8 8.3 71 2-74 94-172 (172)
317 2krb_A Eukaryotic translation 99.6 9.4E-16 3.2E-20 103.1 6.2 66 94-160 2-80 (81)
318 2cpy_A RNA-binding protein 12; 99.6 3E-15 1E-19 107.4 9.1 77 89-167 11-95 (114)
319 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.7E-20 115.7 9.2 73 2-74 95-175 (175)
320 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.6E-20 107.2 6.3 75 89-166 15-98 (100)
321 2cjk_A Nuclear polyadenylated 99.6 1.3E-15 4.5E-20 116.5 7.1 72 2-76 87-166 (167)
322 1b7f_A Protein (SXL-lethal pro 99.6 3.6E-15 1.2E-19 114.1 9.4 72 2-73 89-168 (168)
323 2mss_A Protein (musashi1); RNA 99.6 9.9E-16 3.4E-20 101.4 5.4 67 95-163 1-75 (75)
324 3egn_A RNA-binding protein 40; 99.6 2.3E-15 7.8E-20 112.5 7.7 79 89-168 41-132 (143)
325 1fj7_A Nucleolin RBD1, protein 99.6 9.6E-16 3.3E-20 107.6 5.2 76 90-167 14-96 (101)
326 2lcw_A RNA-binding protein FUS 99.4 1E-16 3.5E-21 115.5 0.0 78 90-168 4-97 (116)
327 2yh0_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 117.5 8.4 73 2-76 114-194 (198)
328 2ki2_A SS-DNA binding protein 99.6 9.4E-16 3.2E-20 105.3 4.5 73 94-168 2-82 (90)
329 1wel_A RNA-binding protein 12; 99.6 2E-15 6.7E-20 110.1 6.4 76 89-166 21-104 (124)
330 2f3j_A RNA and export factor b 99.6 5.9E-15 2E-19 114.1 9.2 78 89-167 84-168 (177)
331 3q2s_C Cleavage and polyadenyl 99.6 1.9E-15 6.4E-20 121.7 6.6 74 92-166 67-150 (229)
332 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 116.6 8.2 70 3-75 110-186 (193)
333 3tyt_A Heterogeneous nuclear r 99.6 8.3E-15 2.8E-19 116.0 10.1 76 91-167 2-81 (205)
334 2db1_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 107.7 7.1 75 90-166 14-98 (118)
335 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2E-15 7E-20 100.4 5.3 68 94-163 1-76 (77)
336 3pgw_A U1-A; protein-RNA compl 99.6 7.9E-15 2.7E-19 121.9 9.9 72 2-74 207-281 (282)
337 1l3k_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 116.0 8.5 75 2-79 104-186 (196)
338 1fxl_A Paraneoplastic encephal 99.6 8.9E-15 3E-19 111.7 9.4 72 2-73 88-167 (167)
339 1fje_B Nucleolin RBD12, protei 99.6 3.7E-15 1.3E-19 115.0 7.2 73 2-76 99-174 (175)
340 2dit_A HIV TAT specific factor 99.6 1.1E-14 3.8E-19 104.1 9.1 74 2-77 15-103 (112)
341 2dnn_A RNA-binding protein 12; 99.6 9.1E-15 3.1E-19 103.7 8.3 72 92-166 15-93 (109)
342 2hgl_A HNRPF protein, heteroge 99.6 4.5E-15 1.5E-19 109.5 6.9 76 89-166 40-125 (136)
343 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.6E-19 102.7 8.5 74 1-76 7-94 (105)
344 1wf0_A TDP-43, TAR DNA-binding 99.6 5.8E-15 2E-19 100.8 6.7 75 91-168 3-80 (88)
345 3d2w_A TAR DNA-binding protein 99.6 1.7E-14 5.9E-19 98.6 8.9 74 89-167 7-85 (89)
346 2hzc_A Splicing factor U2AF 65 99.6 1E-14 3.4E-19 99.3 7.6 70 91-162 4-86 (87)
347 2lmi_A GRSF-1, G-rich sequence 99.6 4.5E-15 1.5E-19 105.3 5.8 76 89-166 7-92 (107)
348 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6.2E-19 116.2 9.8 73 2-75 151-227 (229)
349 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-14 4.2E-19 114.4 8.4 73 2-75 120-196 (198)
350 3tht_A Alkylated DNA repair pr 99.5 3.6E-14 1.2E-18 119.9 10.9 73 2-74 18-97 (345)
351 2pe8_A Splicing factor 45; RRM 99.5 4.5E-14 1.6E-18 99.4 9.3 76 90-165 5-93 (105)
352 2dit_A HIV TAT specific factor 99.5 1.2E-13 4.1E-18 98.7 11.5 78 89-167 11-103 (112)
353 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.8E-19 115.0 8.1 78 90-168 131-231 (240)
354 1iqt_A AUF1, heterogeneous nuc 99.5 5E-15 1.7E-19 97.9 3.5 67 95-163 1-75 (75)
355 2hgm_A HNRPF protein, heteroge 99.5 4.5E-14 1.5E-18 102.5 6.8 74 90-166 39-121 (126)
356 2xs2_A Deleted in azoospermia- 99.5 2.1E-14 7.3E-19 100.8 4.7 74 92-168 8-88 (102)
357 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.7E-13 9.2E-18 94.3 10.2 71 3-77 11-91 (100)
358 2dha_A FLJ20171 protein; RRM d 99.5 2.3E-14 7.9E-19 103.8 4.8 74 91-166 21-105 (123)
359 2voo_A Lupus LA protein; RNA-b 99.5 9.4E-14 3.2E-18 108.8 7.8 72 92-165 108-186 (193)
360 3v4m_A Splicing factor U2AF 65 99.5 1.8E-13 6.3E-18 96.3 8.0 73 1-75 4-96 (105)
361 3v4m_A Splicing factor U2AF 65 99.5 2.2E-13 7.6E-18 95.9 8.1 75 91-165 3-96 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.5E-12 5.1E-17 90.5 10.3 63 104-168 27-92 (100)
363 3ue2_A Poly(U)-binding-splicin 99.4 6E-13 2.1E-17 95.5 8.3 72 2-75 20-108 (118)
364 3sde_A Paraspeckle component 1 99.4 8.1E-13 2.8E-17 108.6 10.1 76 89-165 18-95 (261)
365 1jmt_A Splicing factor U2AF 35 99.4 6.2E-14 2.1E-18 98.6 2.8 63 9-73 22-103 (104)
366 3s6e_A RNA-binding protein 39; 99.4 9.6E-13 3.3E-17 93.8 8.7 76 90-165 4-92 (114)
367 3ue2_A Poly(U)-binding-splicin 99.4 9.7E-13 3.3E-17 94.4 8.4 74 92-165 19-108 (118)
368 2dnl_A Cytoplasmic polyadenyla 99.4 2.2E-12 7.4E-17 92.4 9.8 69 91-163 6-85 (114)
369 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.7E-17 110.8 8.6 76 89-164 14-97 (345)
370 3s6e_A RNA-binding protein 39; 99.3 2.9E-12 1E-16 91.3 8.2 73 2-76 7-93 (114)
371 2j8a_A Histone-lysine N-methyl 99.3 1.4E-12 4.9E-17 93.1 6.0 70 94-164 3-94 (136)
372 1owx_A Lupus LA protein, SS-B, 99.3 9E-12 3.1E-16 88.9 9.6 72 3-74 19-94 (121)
373 1jmt_A Splicing factor U2AF 35 99.3 3.8E-12 1.3E-16 89.4 7.1 64 99-163 21-103 (104)
374 2dnr_A Synaptojanin-1; RRM dom 99.3 3.6E-11 1.2E-15 80.5 9.1 78 89-167 3-87 (91)
375 1owx_A Lupus LA protein, SS-B, 99.2 2.1E-10 7E-15 81.9 10.6 76 88-164 13-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.2 7.6E-11 2.6E-15 78.9 7.2 70 4-76 9-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 2.9E-10 9.9E-15 76.4 5.3 75 88-163 10-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 7.2E-10 2.5E-14 74.5 4.7 68 4-74 17-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.7 4.1E-08 1.4E-12 78.4 9.1 74 92-165 123-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.7 2.5E-08 8.5E-13 79.6 7.4 60 14-75 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 1.2E-07 4.1E-12 65.0 7.3 69 2-72 21-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.6 4.1E-07 1.4E-11 61.9 9.6 85 3-106 9-98 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.5 4.4E-07 1.5E-11 62.2 7.1 69 93-162 21-96 (117)
384 1wey_A Calcipressin 1; structu 98.4 1.1E-06 3.9E-11 60.0 6.7 74 1-76 4-84 (104)
385 1whv_A Poly(A)-specific ribonu 98.2 5.2E-06 1.8E-10 55.7 6.4 53 4-57 18-70 (100)
386 3ctr_A Poly(A)-specific ribonu 98.1 5E-06 1.7E-10 56.0 5.6 55 4-59 8-62 (101)
387 1uw4_A UPF3X; nonsense mediate 98.0 1.6E-05 5.4E-10 53.4 6.4 60 3-62 2-71 (91)
388 2dhx_A Poly (ADP-ribose) polym 97.9 0.00023 7.7E-09 48.4 10.3 74 92-167 7-85 (104)
389 1wey_A Calcipressin 1; structu 97.8 5.8E-05 2E-09 51.5 6.5 73 93-166 5-84 (104)
390 1whv_A Poly(A)-specific ribonu 97.8 0.00018 6.1E-09 48.3 8.1 55 93-149 16-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.6 0.00034 1.2E-08 49.1 7.9 69 3-74 25-95 (119)
392 2l08_A Regulator of nonsense t 97.6 0.0001 3.6E-09 49.7 5.1 61 2-62 9-79 (97)
393 3ctr_A Poly(A)-specific ribonu 97.5 0.0002 6.8E-09 48.2 5.6 54 94-149 7-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 97.4 0.0007 2.4E-08 47.5 7.6 69 92-163 23-94 (119)
395 1uw4_A UPF3X; nonsense mediate 97.2 0.0018 6.2E-08 43.3 7.3 70 94-164 2-86 (91)
396 3pq1_A Poly(A) RNA polymerase; 96.9 0.00035 1.2E-08 61.0 2.7 51 3-54 54-107 (464)
397 2l08_A Regulator of nonsense t 96.4 0.0083 2.8E-07 40.4 6.0 71 93-164 9-94 (97)
398 3p3d_A Nucleoporin 53; structu 96.2 0.0082 2.8E-07 42.7 5.4 69 93-164 7-97 (132)
399 3d45_A Poly(A)-specific ribonu 96.0 0.016 5.5E-07 51.6 7.5 57 3-60 441-497 (507)
400 3p3d_A Nucleoporin 53; structu 95.9 0.0094 3.2E-07 42.4 4.5 68 3-74 8-97 (132)
401 3pq1_A Poly(A) RNA polymerase; 95.3 0.0078 2.7E-07 52.6 2.7 53 93-147 53-108 (464)
402 3d45_A Poly(A)-specific ribonu 92.5 0.38 1.3E-05 42.7 7.9 55 93-149 440-494 (507)
403 4eyt_A Telomerase associated p 90.4 2.5 8.6E-05 27.5 8.6 57 92-149 11-67 (129)
404 4eyt_A Telomerase associated p 88.7 3.5 0.00012 26.8 9.1 67 2-72 12-78 (129)
405 2g0c_A ATP-dependent RNA helic 88.6 2.1 7.1E-05 27.0 6.8 68 4-74 2-75 (76)
406 2g0c_A ATP-dependent RNA helic 87.9 0.94 3.2E-05 28.7 4.8 60 104-164 11-75 (76)
407 3ts2_A Protein LIN-28 homolog 73.5 0.54 1.8E-05 34.3 -0.6 29 16-44 1-29 (148)
408 4e8u_A Putative uncharacterize 62.7 10 0.00035 28.2 4.4 44 4-47 14-73 (172)
409 3ts2_A Protein LIN-28 homolog 62.4 2 6.7E-05 31.3 0.5 59 109-167 2-72 (148)
410 1yg0_A COP associated protein; 59.0 23 0.00078 20.2 5.6 54 1-54 1-59 (66)
411 2e5p_A Protein PHF1, PHD finge 56.9 5.8 0.0002 24.2 1.8 21 26-46 27-47 (68)
412 3fry_A Probable copper-exporti 55.7 27 0.00093 21.0 5.1 51 3-54 7-59 (73)
413 3lpe_A Putative transcription 54.8 41 0.0014 21.9 6.0 31 28-58 39-72 (92)
414 2m0o_A PHD finger protein 1; t 51.6 7.7 0.00026 24.4 1.8 21 26-46 44-64 (79)
415 2eqj_A Metal-response element- 51.4 7.9 0.00027 23.7 1.8 20 27-46 32-51 (66)
416 4a4j_A Pacszia, cation-transpo 51.1 35 0.0012 19.9 5.0 43 4-46 5-49 (69)
417 2yko_A LINE-1 ORF1P; RNA-bindi 47.1 61 0.0021 25.3 6.6 70 3-72 53-148 (233)
418 4e8u_A Putative uncharacterize 45.2 37 0.0013 25.2 4.9 44 94-138 13-72 (172)
419 2hiy_A Hypothetical protein; C 44.7 95 0.0032 23.1 10.1 127 5-136 9-144 (183)
420 1fvq_A Copper-transporting ATP 44.1 45 0.0015 19.3 4.7 53 2-54 3-60 (72)
421 2e5q_A PHD finger protein 19; 42.8 4.7 0.00016 24.2 -0.1 20 27-46 26-45 (63)
422 4hcz_A PHD finger protein 1; p 41.3 15 0.0005 21.8 1.8 20 27-46 22-41 (58)
423 2w7a_A LINE-1 ORF1P; RNA-bindi 40.6 72 0.0025 21.2 5.4 69 3-71 4-98 (100)
424 2kyz_A Heavy metal binding pro 39.6 26 0.00087 20.4 3.0 53 1-54 1-55 (67)
425 2g9o_A Copper-transporting ATP 39.2 52 0.0018 20.7 4.6 53 3-55 5-63 (90)
426 3dxs_X Copper-transporting ATP 38.3 62 0.0021 19.1 6.2 52 3-54 4-61 (74)
427 2ki0_A DS119; beta-alpha-beta, 38.1 12 0.0004 18.9 0.9 16 3-23 6-21 (36)
428 3j21_T 50S ribosomal protein L 36.1 56 0.0019 21.1 4.2 50 5-54 25-81 (86)
429 2k5n_A Putative cold-shock pro 35.9 15 0.00051 23.0 1.4 20 26-45 4-23 (74)
430 2cu1_A Mitogen-activated prote 34.2 1E+02 0.0035 20.5 6.1 65 8-75 22-87 (103)
431 2kcm_A Cold shock domain famil 33.6 17 0.00059 22.8 1.4 20 27-46 3-22 (74)
432 2od0_A Hypothetical protein VP 32.8 36 0.0012 22.7 3.0 28 14-41 4-31 (105)
433 1c9o_A CSPB, cold-shock protei 32.4 19 0.00064 21.9 1.4 19 27-45 4-22 (66)
434 3cam_A Cold-shock domain famil 32.2 19 0.00064 22.0 1.4 19 27-45 4-22 (67)
435 3h7h_B Transcription elongatio 31.2 52 0.0018 22.2 3.6 32 28-59 40-74 (106)
436 3fut_A Dimethyladenosine trans 30.9 43 0.0015 26.8 3.7 26 4-30 112-137 (271)
437 3a0j_A Cold shock protein; OB- 30.7 20 0.0007 22.2 1.4 19 27-45 4-22 (73)
438 1g6p_A Cold shock protein TMCS 29.8 22 0.00075 21.6 1.4 19 27-45 3-21 (66)
439 2f06_A Conserved hypothetical 28.9 1.5E+02 0.005 20.6 10.0 116 4-152 8-134 (144)
440 2npt_B Mitogen-activated prote 28.6 1.2E+02 0.004 20.0 4.7 47 103-149 37-84 (100)
441 4gdk_A Ubiquitin-like protein 27.6 73 0.0025 20.7 3.7 20 5-24 53-75 (91)
442 1ytr_A Bacteriocin plantaricin 27.4 36 0.0012 15.8 1.5 12 16-27 14-25 (26)
443 3ulj_A LIN28B, DNA-binding pro 26.9 26 0.00088 22.9 1.4 17 27-43 11-27 (90)
444 1h95_A CSD, Y-box binding prot 26.8 26 0.00089 22.2 1.4 19 27-45 11-29 (79)
445 2xmm_A SSR2857 protein, ATX1; 26.8 86 0.0029 17.3 4.3 54 1-54 1-57 (64)
446 4bby_A Alkyldihydroxyacetoneph 26.7 42 0.0014 30.6 3.3 50 10-59 351-411 (658)
447 2cu1_A Mitogen-activated prote 26.7 1.4E+02 0.0049 19.8 6.7 63 103-166 25-88 (103)
448 2yh5_A DAPX protein, BAMC; lip 26.5 1.6E+02 0.0055 20.3 7.8 95 5-116 16-111 (127)
449 3w1s_C Ubiquitin-like protein 26.4 1.3E+02 0.0045 19.5 4.8 20 5-24 53-75 (91)
450 1cqm_A Ribosomal protein S6; a 26.0 84 0.0029 20.7 3.9 45 10-54 10-76 (101)
451 2c60_A Human mitogen-activated 25.9 1.2E+02 0.004 20.3 4.3 47 103-149 48-95 (111)
452 3i2z_B RNA chaperone, negative 25.8 28 0.00097 21.4 1.4 21 25-45 6-26 (71)
453 3uzu_A Ribosomal RNA small sub 25.7 24 0.00081 28.4 1.3 28 4-31 116-143 (279)
454 2xmw_A PACS-N, cation-transpor 25.3 99 0.0034 17.5 6.3 42 4-45 6-49 (71)
455 2nzc_A Hypothetical protein; s 24.9 27 0.00091 22.6 1.1 57 14-73 19-82 (86)
456 1mwy_A ZNTA; open-faced beta-s 24.1 1.1E+02 0.0038 17.6 6.6 43 3-45 5-49 (73)
457 1eij_A Hypothetical protein MT 24.0 49 0.0017 21.0 2.3 20 8-27 50-69 (80)
458 2xk0_A Polycomb protein PCL; t 24.0 39 0.0013 20.7 1.6 18 27-46 34-51 (69)
459 1ik9_C DNA ligase IV; DNA END 23.8 54 0.0018 17.4 2.1 15 12-26 20-34 (37)
460 2gu3_A YPMB protein; APC1927, 23.6 63 0.0022 22.8 3.0 28 7-34 68-98 (136)
461 2okq_A Hypothetical protein YB 22.9 2.1E+02 0.0071 20.3 5.6 39 109-147 48-109 (141)
462 1aw0_A Menkes copper-transport 22.7 1.1E+02 0.0039 17.3 4.6 52 4-55 6-63 (72)
463 3aqq_A Calcium-regulated heat 22.6 39 0.0013 24.3 1.8 20 26-45 64-83 (147)
464 3swz_A Steroid 17-alpha-hydrox 22.5 98 0.0033 26.4 4.7 48 6-54 18-69 (494)
465 2l3m_A Copper-ION-binding prot 22.3 1.2E+02 0.004 17.2 6.3 51 4-54 8-64 (71)
466 2kt2_A Mercuric reductase; nme 22.3 1.2E+02 0.0039 17.2 7.0 43 3-45 2-46 (69)
467 3tbg_A Cytochrome P450 2D6; mo 22.2 62 0.0021 27.5 3.4 46 7-53 21-69 (479)
468 1cpz_A Protein (COPZ); copper 22.0 1.1E+02 0.0039 17.0 7.5 42 4-45 3-46 (68)
469 3e6i_A CYPIIE1, P450-J, cytoch 21.4 89 0.0031 26.4 4.2 47 7-54 21-70 (476)
470 2kjw_A TS9, 30S ribosomal prot 21.4 45 0.0015 22.0 1.8 21 4-26 48-68 (96)
471 1y3j_A Copper-transporting ATP 21.3 1.3E+02 0.0046 17.5 4.9 52 4-55 6-63 (77)
472 1q8l_A Copper-transporting ATP 21.2 1.5E+02 0.005 17.9 7.4 53 3-55 11-69 (84)
473 1qyr_A KSGA, high level kasuga 20.5 65 0.0022 25.3 2.9 23 4-26 92-114 (252)
474 2fh0_A Hypothetical 16.0 kDa p 20.2 62 0.0021 20.6 2.1 19 8-26 48-66 (81)
475 2ew9_A Copper-transporting ATP 20.2 1.9E+02 0.0066 19.5 5.2 40 5-44 84-125 (149)
476 2lss_A Cold shock-like protein 25.3 22 0.00076 21.9 0.0 20 26-45 6-25 (70)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.4e-35 Score=235.07 Aligned_cols=153 Identities=23% Similarity=0.436 Sum_probs=138.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
++||||+|||+++|+++|+++|++||+|.+|+| ++|||||+|.+.++|.+|++.|++..+. |+.|.+.++
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~--g~~i~~~~~ 92 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK--GKPVRIMWS 92 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC--Ccccccccc
Confidence 479999999999999999999999999999988 4689999999999999999999999986 999999988
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHh
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~ 147 (268)
....... .....+|||.|| +..+++++|+++|+.||.|..+.| .+|||||+|.+.++|++|++.
T Consensus 93 ~~~~~~~---------~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 93 QRDPSLR---------KSGVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp CCCTHHH---------HHCTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccc---------ccccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH
Confidence 7543221 123578999999 889999999999999999999988 468999999999999999999
Q ss_pred hCCCccCCcEEEEEEeecC
Q 024366 148 TDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a~~~ 166 (268)
|||..|+|+.|.|.++.++
T Consensus 163 lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HTTCEETTEECEEEECCCH
T ss_pred hCCCEECCEEEEEEEcCCC
Confidence 9999999999999999754
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=220.31 Aligned_cols=150 Identities=23% Similarity=0.470 Sum_probs=137.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
++|||+|||+++|+++|+++|+.||+|.+|.| ++|+|||+|.+.++|.+|++.|++..+. |+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEcCC
Confidence 68999999999999999999999999999998 3689999999999999999999999986 99999999875
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHh
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~ 147 (268)
... ....+..+|+|.|| |..+++++|+++|+.||.|..+.+ .+|+|||+|.+.++|.+|+..
T Consensus 79 ~~~---------~~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 79 SQQ---------SSSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp CCC---------CCCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCC---------CCCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 432 23446789999999 889999999999999999999988 356999999999999999999
Q ss_pred hCCCccCCcEEEEEEee
Q 024366 148 TDRSKLVDRVISVEYAL 164 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a~ 164 (268)
|||..++|+.|.|.||.
T Consensus 149 l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 149 MQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HTTCEETTEECEEEESC
T ss_pred hCCCccCCcEEEEEecC
Confidence 99999999999999985
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-34 Score=232.21 Aligned_cols=165 Identities=21% Similarity=0.401 Sum_probs=141.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~~ 105 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--GRNIKVGRP 105 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--CeeEEEecC
Confidence 478999999999999999999999999999998 4799999999999999999999999886 999999887
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~ 145 (268)
..................+..+|||.|| +..+++++|+++|++||.|..+.|. +++|||+|.+.++|.+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 6543221100001112345789999999 8899999999999999999999982 579999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCCCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~~~ 169 (268)
+.|||..|+|+.|.|.|+..+...
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHccCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999999877544
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.4e-33 Score=215.61 Aligned_cols=148 Identities=28% Similarity=0.474 Sum_probs=135.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.+ ++|+|||+|.++++|.+|++.|++..+. |+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 80 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSYA 80 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEec
Confidence 589999999999999999999999999999988 3589999999999999999999999986 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
.... ...+..+|+|.|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++|.+|+
T Consensus 81 ~~~~-----------~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 148 (168)
T 1b7f_A 81 RPGG-----------ESIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148 (168)
T ss_dssp CCCS-----------STTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCc-----------ccCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHH
Confidence 7543 2345789999999 889999999999999999999988 2479999999999999999
Q ss_pred HhhCCCccCC--cEEEEEEe
Q 024366 146 ESTDRSKLVD--RVISVEYA 163 (268)
Q Consensus 146 ~~l~g~~~~g--~~i~v~~a 163 (268)
+.|||..+.| ..|.|.||
T Consensus 149 ~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 149 SALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCEecCCCeEEEEEeC
Confidence 9999999988 99999986
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.9e-33 Score=222.39 Aligned_cols=158 Identities=23% Similarity=0.407 Sum_probs=131.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|.+|.| ++|||||+|.+.++|.+|++. ++..+. |+.|.|.++
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~--g~~l~v~~~ 89 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD--GRVVEPKRA 89 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET--TEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC--CEEeeeecc
Confidence 479999999999999999999999999999988 367999999999999999975 777775 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
........ .....+..+|||.|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|.+|+
T Consensus 90 ~~~~~~~~-----~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 90 VSREDSQR-----PGAHLTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CC----------------CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred cCcccccc-----cccCCCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 75533221 123345689999999 889999999999999999999988 3569999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCCCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~~~ 169 (268)
.. +|..|+|+.|.|.|+.++...
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HC-SCCEETTEECEEEECC-----
T ss_pred Hh-CCcEECCEEEEEEecCChhHh
Confidence 96 799999999999999877654
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=5.7e-33 Score=225.20 Aligned_cols=162 Identities=22% Similarity=0.314 Sum_probs=141.0
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEee---CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEY-ETRQSELERLFSKYGRIERVDMK---SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+ ++|+++|+++|+.||+|..|.|. +|||||+|.+.++|.+|++.|++..|. |+.|.|.++....
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~v~~a~~~~ 111 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLSKHQN 111 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS--SSBCEEECCSCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEecCcc
Confidence 57999999999 99999999999999999999993 799999999999999999999999986 9999999987542
Q ss_pred CcCCCC------------------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE---eCC
Q 024366 78 GRHRDG------------------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRN 129 (268)
Q Consensus 78 ~~~~~~------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i---~~~ 129 (268)
...... ........+..+|||.|| |..+++++|+++|++|| .|..+.+ .++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 111000 000112356799999999 88999999999999999 9999999 679
Q ss_pred eEEEEeccHHHHHHHHHhhCCCccC-CcEEEEEEeecC
Q 024366 130 FAFVQFETQEEATKALESTDRSKLV-DRVISVEYALKD 166 (268)
Q Consensus 130 ~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~a~~~ 166 (268)
+|||+|.+.++|.+|++.|||..+. |+.|.|.|+.++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999753
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.3e-33 Score=222.32 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=134.9
Q ss_pred CccEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFE-YETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp-~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+||| ..+|+++|+++|++||+|..|+| ++|||||+|.+.++|..|++.|||..+. |+.|.|.+++...
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF--GQKMNVCVSKQPA 81 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECSCSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CceEEEEEccCCc
Confidence 5799999999 89999999999999999999998 5799999999999999999999999997 9999999987543
Q ss_pred CcCCC------CC--------------------CCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCe--EEEEE---
Q 024366 78 GRHRD------GS--------------------KSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV--LHVRI--- 126 (268)
Q Consensus 78 ~~~~~------~~--------------------~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v--~~~~i--- 126 (268)
..+.. .. ......+|+.+|||.|| |..+++++|+++|++||.| ..+.+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 21110 00 00012356789999999 8899999999999999998 78887
Q ss_pred ---eCCeEEEEeccHHHHHHHHHhhCCCccCCc----EEEEEEe
Q 024366 127 ---RRNFAFVQFETQEEATKALESTDRSKLVDR----VISVEYA 163 (268)
Q Consensus 127 ---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~----~i~v~~a 163 (268)
.+++|||+|.+.++|.+||..|||..|.|. .+.|.|+
T Consensus 161 ~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 237999999999999999999999999876 5777765
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.3e-33 Score=214.13 Aligned_cols=148 Identities=26% Similarity=0.517 Sum_probs=133.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|..|.+ ++|+|||+|.++++|.+|++.|++..+. |+.|.|.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ--TKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC--CceEEEEec
Confidence 589999999999999999999999999999988 2489999999999999999999999886 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
..... ..+..+|+|.|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++|.+|+
T Consensus 80 ~~~~~-----------~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 80 RPSSA-----------SIRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp CCCCG-----------GGTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCcc-----------cCCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Confidence 75422 234678999999 889999999999999999999988 2579999999999999999
Q ss_pred HhhCCCccCCcE--EEEEEe
Q 024366 146 ESTDRSKLVDRV--ISVEYA 163 (268)
Q Consensus 146 ~~l~g~~~~g~~--i~v~~a 163 (268)
+.|||..+.|+. |.|.||
T Consensus 148 ~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 148 KGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHTTCCCTTCSSCCEEEEC
T ss_pred HHhcCCccCCCccceEEEeC
Confidence 999999999965 888876
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=6.5e-33 Score=219.93 Aligned_cols=162 Identities=23% Similarity=0.325 Sum_probs=141.1
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEY-ETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+ ++|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|+|..+. |+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEEEecCCC
Confidence 48999999999 9999999999999999999999 3799999999999999999999999986 9999999987542
Q ss_pred CcCCCC------------------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE---eCC
Q 024366 78 GRHRDG------------------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRN 129 (268)
Q Consensus 78 ~~~~~~------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i---~~~ 129 (268)
...... .......+++.+|||.|| |..+++++|+++|+.|| .|..+.+ .+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 111000 001122356899999999 88999999999999999 9999999 578
Q ss_pred eEEEEeccHHHHHHHHHhhCCCccC-CcEEEEEEeecC
Q 024366 130 FAFVQFETQEEATKALESTDRSKLV-DRVISVEYALKD 166 (268)
Q Consensus 130 ~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~a~~~ 166 (268)
+|||+|.+.++|.+|+..|||..++ |+.|.|.|+.++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999999 999999999753
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=8.5e-33 Score=219.03 Aligned_cols=163 Identities=18% Similarity=0.349 Sum_probs=140.1
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCce
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKY----G-------RIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~ 67 (268)
++++|||+|||+++|+++|+++|+.| | .|.++.+ ++|||||+|.++++|.+|+ .|++..|. |+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~--g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ--GQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET--TEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc--Cce
Confidence 57899999999999999999999999 6 7777777 6899999999999999999 89999886 999
Q ss_pred EEEEEeccCCCcCCCC---------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCe
Q 024366 68 LSVEWARGERGRHRDG---------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNF 130 (268)
Q Consensus 68 i~v~~~~~~~~~~~~~---------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~ 130 (268)
|.|.++.......... ........+..+|||.|| |..+++++|+++|++||.|..+.+. +|+
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 9999987653222111 111122356789999999 8899999999999999999999882 579
Q ss_pred EEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 131 AFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 131 afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
|||+|.+.++|.+|++.|||..|+|+.|.|.|+.++.
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999997754
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=4.4e-32 Score=226.65 Aligned_cols=160 Identities=24% Similarity=0.524 Sum_probs=138.1
Q ss_pred CccEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELE----RLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~----~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+ ++|..||+|..|.| .+|||||+|.+.++|.+|++.|||..|. |+.|.|.|
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 86 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--DKPMRIQY 86 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEEE
Confidence 5899999999999999976 89999999999998 4699999999999999999999999886 99999999
Q ss_pred eccCCCcCCC--C-------------------------------------------------------------------
Q 024366 73 ARGERGRHRD--G------------------------------------------------------------------- 83 (268)
Q Consensus 73 ~~~~~~~~~~--~------------------------------------------------------------------- 83 (268)
+......... .
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 8754320000 0
Q ss_pred -------------------------------CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCC
Q 024366 84 -------------------------------SKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRN 129 (268)
Q Consensus 84 -------------------------------~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~ 129 (268)
........+.++|||.|| +..+++++|+++|+.||.|..|.| .+|
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g 245 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHD 245 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 000022335688999999 889999999999999999999999 348
Q ss_pred eEEEEeccHHHHHHHHHhhCCCccC-CcEEEEEEee
Q 024366 130 FAFVQFETQEEATKALESTDRSKLV-DRVISVEYAL 164 (268)
Q Consensus 130 ~afV~f~~~~~a~~A~~~l~g~~~~-g~~i~v~~a~ 164 (268)
+|||+|.+.++|.+|++.|||..|. |+.|.|.|++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999999 9999999986
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2e-32 Score=212.16 Aligned_cols=147 Identities=19% Similarity=0.406 Sum_probs=133.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKY----G-------RIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i 68 (268)
+++|||+|||+++|+++|+++|++| | .|.++.+ ++|||||+|.++++|.+|+ .|++..+. |+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~--g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ--GQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEET--TEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEec--Ccee
Confidence 5799999999999999999999999 7 7888887 6899999999999999999 89999986 9999
Q ss_pred EEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHH
Q 024366 69 SVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEE 140 (268)
Q Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~ 140 (268)
.|.++.... ......+|+|.|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++
T Consensus 81 ~v~~~~~~~-----------~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 81 KIRRPHDYQ-----------PLPGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp EEECCSSCC-----------CCTTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred eecCCcccC-----------CCCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 999876432 1234789999999 889999999999999999999988 25699999999999
Q ss_pred HHHHHHhhCCCccCCcEEEEEEe
Q 024366 141 ATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 141 a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
|.+|++.|||..++|+.|.|.||
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999997
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.7e-32 Score=209.24 Aligned_cols=151 Identities=25% Similarity=0.437 Sum_probs=132.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----------eCCEEEEEEcCHHHHHHHHHhcCCCCcc-CCCceEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM----------KSGFAFVYFEDDRDAADAIRGLDNIPFG-YDRRRLSV 70 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~g~~i~v 70 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|.+|++.|++..+. ..+..|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 579999999999999999999999999999987 2579999999999999999999998763 23678888
Q ss_pred EEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHH
Q 024366 71 EWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATK 143 (268)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~ 143 (268)
.++..... ...+..+|||.|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++|.+
T Consensus 83 ~~~~~~~~----------~~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 83 KPADSEKN----------NAVEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp EECGGGCC----------SCGGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHH
T ss_pred cccccccc----------ccCCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHH
Confidence 88765432 2235789999999 889999999999999999999988 35699999999999999
Q ss_pred HHHhhCCCccC---CcEEEEEEe
Q 024366 144 ALESTDRSKLV---DRVISVEYA 163 (268)
Q Consensus 144 A~~~l~g~~~~---g~~i~v~~a 163 (268)
|++.|||..+. ++.|.|.||
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCcccCCCCCCeEEEec
Confidence 99999998776 499999997
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.1e-32 Score=210.96 Aligned_cols=148 Identities=21% Similarity=0.471 Sum_probs=131.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|.+|++. +..+ +|+.|.|.++
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~~ 78 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKRA 78 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEcccccc
Confidence 579999999999999999999999999999998 358999999999999999984 3444 4899999887
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~ 145 (268)
..... ..+..+|||.|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++|.+|+
T Consensus 79 ~~~~~-----------~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 79 IPRDE-----------QDKTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp CCHHH-----------HHHCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred cchhh-----------ccCCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 64322 224679999999 889999999999999999999998 2469999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecC
Q 024366 146 ESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~ 166 (268)
+ ++|..++|+.|.|.|+.++
T Consensus 147 ~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 147 Q-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp H-CSEECSSSSCEEEEECCCC
T ss_pred h-CCCEEeCCeEEEEeecCCC
Confidence 8 8999999999999999764
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.5e-32 Score=213.57 Aligned_cols=152 Identities=22% Similarity=0.381 Sum_probs=133.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+++|+++|+++|..||.|..+.+ ++|||||+|.++++|.+|++ |++..+. |+.|.|.++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~v~~~~ 89 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKLEKPK 89 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET--TEEEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC--CeEEEEecCC
Confidence 579999999999999999999999986544222 67999999999999999995 9999987 9999999987
Q ss_pred cCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 75 GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
..... ...+..+|||.|| |..+++++|+++|+.||.|..+.. .+|+|||+|.+.++|.+|+..|||.
T Consensus 90 ~~~~~---------~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 90 GRDSK---------KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp CSSCS---------TTGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred Ccccc---------ccccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 64322 2345789999999 889999999999999999988722 5789999999999999999999999
Q ss_pred ccCCcEEEEEEeecC
Q 024366 152 KLVDRVISVEYALKD 166 (268)
Q Consensus 152 ~~~g~~i~v~~a~~~ 166 (268)
.|+|+.|.|.|+.++
T Consensus 160 ~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EIDGRSVSLYYTGEK 174 (175)
T ss_dssp EETTEEEEEEECSSC
T ss_pred EECCeEEEEEecCCC
Confidence 999999999999764
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.3e-30 Score=215.42 Aligned_cols=146 Identities=27% Similarity=0.396 Sum_probs=133.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|+|..+. |+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a~----- 94 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK--SRPLRIRFAT----- 94 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEECC-----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEEC--CceeEeeecc-----
Confidence 368999999999999999999999999999999 5899999999999999999999999986 9999999986
Q ss_pred CCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCC-C
Q 024366 80 HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDR-S 151 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g-~ 151 (268)
+..+|||.|| |..+++++|+++|+.||.|..|.| .+|+|||+|.+.++|.+|+..||+ .
T Consensus 95 ------------~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 95 ------------HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ------------CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred ------------cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 3679999999 889999999999999999999988 368999999999999999999965 4
Q ss_pred ccC---CcEEEEEEeecCC
Q 024366 152 KLV---DRVISVEYALKDD 167 (268)
Q Consensus 152 ~~~---g~~i~v~~a~~~~ 167 (268)
.+. ++.|.|.++....
T Consensus 162 ~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EESSSSCCBCEEEECCCEE
T ss_pred EEecCCCceEEEeeccccC
Confidence 443 9999999997654
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.2e-30 Score=217.38 Aligned_cols=157 Identities=21% Similarity=0.325 Sum_probs=137.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|.++|..|| +|..|.| ++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 194 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE--GYTLVTKVS 194 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEC
Confidence 47899999999999999999999999 9999998 5799999999999999999999999986 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCC-CCHHHHHHhhccCCCeEEEEEe---------CCeEEEEeccHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATK 143 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~~l~~~f~~~g~v~~~~i~---------~~~afV~f~~~~~a~~ 143 (268)
.+....... .....+..+|||.|| |.. +++++|+++|+.||.|..|.|. +|+|||+|.+.++|.+
T Consensus 195 ~~~~~~~~~----~~~~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 195 NPLEKSKRT----DSATLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp CCC-------------CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred CCCcccccc----cccCCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 865433221 124456789999999 788 9999999999999999999882 4689999999999999
Q ss_pred HHHhhCCCccCCcEEEEEEeecC
Q 024366 144 ALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 144 A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
|+ .|||..|+|+.|.|.|+.++
T Consensus 270 A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 270 AL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HG-GGTTEEETTEEEEEEECCCC
T ss_pred HH-HhcCCEECCcEEEEEEecCC
Confidence 99 99999999999999999865
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.3e-30 Score=214.81 Aligned_cols=155 Identities=22% Similarity=0.334 Sum_probs=139.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+.+|+++|+++|+.||+|..+.+ ++|+|||+|.+.++|.+|++.|+|..+. |+.|.|.++
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~a 172 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--PRTLYVHWT 172 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEC
Confidence 368999999999999999999999999999987 3679999999999999999999999886 999999998
Q ss_pred ccCCCcCCCCCCCcCCCCCCcEEEEEccCCCC-CCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHH
Q 024366 74 RGERGRHRDGSKSMANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKAL 145 (268)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~ 145 (268)
...... ....+..+|||.|| |.. +++++|+++|+.||.|..+.| .+|+|||+|.+.++|.+|+
T Consensus 173 ~~~~~~--------~~~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 173 DAGQLT--------PALLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp CGGGCC--------TTTTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCC--------cccCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHH
Confidence 765332 23346789999999 777 599999999999999999988 3679999999999999999
Q ss_pred HhhCCCccCCcEEEEEEeecCC
Q 024366 146 ESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 146 ~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..|||..++|+.|.|.|+.++.
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHTTCEETTEECEEEECCSSS
T ss_pred HHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999999997654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.9e-30 Score=214.44 Aligned_cols=145 Identities=20% Similarity=0.344 Sum_probs=134.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
+++|||+|||+++|+++|+++|+.|| |..|.+ .+|||||+|.+.++|.+|++.|++..+. |+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~~~~----- 93 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR--ERELSVQLQP----- 93 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC--CeEEEEEecC-----
Confidence 57999999999999999999999999 999988 6799999999999999999999999986 9999999854
Q ss_pred CCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 80 HRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
+..+|||+|| |..+++++|+++|+.||.|..+.+ .+|+|||+|.+.++|.+|++.|+|.
T Consensus 94 ------------~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 94 ------------TDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp ------------CSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ------------CCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3579999999 889999999999999999999887 3569999999999999999999999
Q ss_pred ccCCcEEEEEEeecCC
Q 024366 152 KLVDRVISVEYALKDD 167 (268)
Q Consensus 152 ~~~g~~i~v~~a~~~~ 167 (268)
.++|+.|.|.++....
T Consensus 161 ~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EETTEECEEEECCGGG
T ss_pred EeCCcEEEEEECCCCC
Confidence 9999999999997654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.1e-29 Score=213.10 Aligned_cols=144 Identities=22% Similarity=0.339 Sum_probs=132.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++ |++..+. |+.|.|.++.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~--g~~i~v~~~~- 116 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG--QNEIIVSHLT- 116 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET--TEECEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC--CcEEEEEECC-
Confidence 479999999999999999999999999999998 36999999999999999995 8999886 9999999863
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE-------eCCeEEEEeccHHHHHHHHHh
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI-------RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i-------~~~~afV~f~~~~~a~~A~~~ 147 (268)
..+|||+|| |..+++++|+++|..|| .|..|.+ .+|||||+|.+.++|.+|+..
T Consensus 117 -----------------~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 117 -----------------ECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp -----------------SCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred -----------------CCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 689999999 88999999999999999 9999988 568999999999999999999
Q ss_pred hCCCccCCcEEEEEEeecCC
Q 024366 148 TDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 148 l~g~~~~g~~i~v~~a~~~~ 167 (268)
|||..+.|+.|.|.++.+..
T Consensus 179 l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HTTCEETTEECEEEECCCC-
T ss_pred hCCCEeCCcEEEEEECCCCc
Confidence 99999999999999997554
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.93 E-value=1e-25 Score=197.93 Aligned_cols=79 Identities=27% Similarity=0.480 Sum_probs=72.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
..+.++|||+|| +..+++++|+++|++||.|+.|.| .+|||||+|.+.++|++||+.|||..|+|..|.|.
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 889999999999999999999988 37899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 024366 162 YALKDDSE 169 (268)
Q Consensus 162 ~a~~~~~~ 169 (268)
|+......
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EeCCCCCC
Confidence 99876543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=5.4e-23 Score=148.44 Aligned_cols=102 Identities=23% Similarity=0.396 Sum_probs=69.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|++|++.|++..|. |+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~--g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEECCC
Confidence 468999999999999999999999999999988 4789999999999999999999999986 99999999876
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHH
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRER 109 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 109 (268)
....... .........+|||.|| +..+|++
T Consensus 83 ~~~~~~~---~~~~~~~~~~lyv~Nl-~~~~T~~ 112 (115)
T 4f25_A 83 RKEREAE---LGARAKEFTNVYIKNF-GPGSTRA 112 (115)
T ss_dssp CCC-------------------------------
T ss_pred ccccccc---cccccCCCCceEeCCC-CCCcccc
Confidence 5432211 1122334567999999 6667654
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=3.5e-22 Score=151.06 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=109.3
Q ss_pred eCCEEEEEEcCHHHHHHHHHhc-CCCCccCCCceEEEEEeccCCCcC-----CCCCCCcCCCCCCcEEEEEccCCCCCCH
Q 024366 35 KSGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWARGERGRH-----RDGSKSMANQRPTKTLFVINFDPIRTRE 108 (268)
Q Consensus 35 ~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~g~~i~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~v~~l~~~~~~~ 108 (268)
.+|+++|+|.+.++|++|++.| |+..+. | .|.+.++....... ...........+.++|||+|| |..+++
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~--G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-~~~~t~ 87 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVD--G-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL-GNNGNK 87 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCC--C-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC-CSCCSC
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCC--C-ceecccccCccccccccccccccccccCCCCCCEEEEeCC-CCCCCH
Confidence 4789999999999999999999 999886 7 99999876532211 111122344566899999999 889999
Q ss_pred HHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 109 RDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
++|+++|+.||.|..|.| .+|||||+|.+.++|..|+..|||..++|+.|.|.|+.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999 48899999999999999999999999999999999997653
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=5.8e-22 Score=151.19 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=99.4
Q ss_pred eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC--cCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHH
Q 024366 35 KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG--RHRDGSKSMANQRPTKTLFVINFDPIRTRERDIK 112 (268)
Q Consensus 35 ~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~ 112 (268)
.+|||||+|.+.++|++|++.+++.... ...+.+........ .............+..+|||+|| |..+++++|+
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~ 88 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGV--DGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL-TYRTSPDTLR 88 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTC--CCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC-CTTCCHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCC--CCcccccCccccccccccccccccccCCCCCCEEEEeCC-CCCCCHHHHH
Confidence 5799999999999999999888754322 12222221111000 00011112223455789999999 8899999999
Q ss_pred HhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 113 RHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 113 ~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
++|+.||.|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|.|+.+...
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999998 457999999999999999999999999999999999987643
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=6.2e-21 Score=132.39 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=70.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||.++|+++|+++|++||+|.+|.| .+|+|||+|.+.++|.+|++.|++..+.+.|++|.|++++.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 689999999999999999999999999999998 589999999999999999999999886567999999999854
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=132.21 Aligned_cols=71 Identities=28% Similarity=0.520 Sum_probs=66.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |++|.|.|++
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~~Ak 97 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ--SKTIKVSYAR 97 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEee
Confidence 68999999999999999999999999999988 4689999999999999999999999986 9999999986
Q ss_pred c
Q 024366 75 G 75 (268)
Q Consensus 75 ~ 75 (268)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 27
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=1.2e-19 Score=159.26 Aligned_cols=72 Identities=36% Similarity=0.672 Sum_probs=67.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.||+++|.++|.+||+|+.|.| ++|||||+|.+.++|.+||+.|||..|. |+.|.|.++
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~--gr~i~V~~a 179 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID--GRRVLVDVE 179 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC--CEEEEEEEe
Confidence 379999999999999999999999999999988 3799999999999999999999999986 999999998
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 74
No 28
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.5e-20 Score=125.96 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++..|||+||++.+|+++|+++|.+||+|.++.+ ++|||||+|.++++|.+|++.||+..+. |++|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~--gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLA--NTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEEECC
Confidence 4678999999999999999999999999999988 7999999999999999999999999987 9999999763
No 29
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=132.11 Aligned_cols=96 Identities=40% Similarity=0.562 Sum_probs=81.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|++..+. |+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEccCCCCc
Confidence 58999999999999999999999999999998 4899999999999999999999999886 999999999876543
Q ss_pred CCCCCCCcCCCCCCcEEEEEcc
Q 024366 80 HRDGSKSMANQRPTKTLFVINF 101 (268)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~v~~l 101 (268)
..... .........+|||+||
T Consensus 79 ~~~~~-~~~~~~~~~~ifvg~L 99 (101)
T 2hvz_A 79 SRFDR-PPARRKLLEVLFNGPL 99 (101)
T ss_dssp SCCCS-CCCSCCCCSCCCSCCC
T ss_pred ccCCC-CCccccCCCceecCCC
Confidence 32221 1223344678999998
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=131.13 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=68.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| .+|||||+|.+.++|.+|++.|++....++|++|.|.++..+...
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 579999999999999999999999999999998 479999999999999999998876433334999999999865433
No 31
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=131.32 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEY-ETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+ ++|+++|+++|++||+|.+|.| .++||||+|.+.++|.+|++.|++..+.+.|++|.|.++....
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 68999999999 9999999999999999999998 5699999999999999999999977644459999999998654
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=128.81 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=69.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+++|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.|++..+.+.|++|.|.|+..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 589999999999999999999999999999998 57999999999999999999998776545699999999986543
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=130.45 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=68.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcC-CCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM--------KSGFAFVYFEDDRDAADAIRGLD-NIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~-~~~~~~~g~~i~v~ 71 (268)
|++|||+|||+++|+++|+++|++|| +|.+|+| ++|||||+|.+.++|.+|++.|+ +..+. |++|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~--gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL--GQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET--TEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC--CEEEEEE
Confidence 68999999999999999999999999 8999987 47999999999999999998775 44454 9999999
Q ss_pred EeccCCCcCC
Q 024366 72 WARGERGRHR 81 (268)
Q Consensus 72 ~~~~~~~~~~ 81 (268)
++.++.....
T Consensus 79 ~a~~~~~~~~ 88 (91)
T 2lxi_A 79 YSDPKPKINE 88 (91)
T ss_dssp CCCSCCCCSC
T ss_pred EcCCCCCCCC
Confidence 9987655443
No 34
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1.5e-20 Score=135.54 Aligned_cols=98 Identities=28% Similarity=0.486 Sum_probs=85.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.+++|||+|||+.+|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|||..+. |+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS--NRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS--SCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEecC
Confidence 3689999999999999999999999999999998 4689999999999999999999999986 99999999885
Q ss_pred CCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCCC
Q 024366 76 ERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN 120 (268)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~ 120 (268)
.... .++ +...++++|+++|++||.
T Consensus 85 ~~~~-------------------~~~-~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-------------------QKM-DTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-------------------TTS-CHHHHHHHHHHHHHHHCC
T ss_pred Chhh-------------------hhh-hHhHhHHHHHHHHHHhCC
Confidence 4322 234 456778999999999884
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=125.07 Aligned_cols=75 Identities=29% Similarity=0.546 Sum_probs=70.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+++|+++|+++|++||+|..|.|.++||||+|.+.++|.+|++.||+..+. |+.|.|.++..+..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH--GVNINVEASKNKSK 82 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEECSSCCCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccC--CcEEEEEECCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999886 99999999986644
No 36
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=1.8e-19 Score=127.30 Aligned_cols=77 Identities=22% Similarity=0.487 Sum_probs=71.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH 80 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~ 80 (268)
+++|||+|||+++|+++|+++|++||+|..|.|.++||||+|.+.++|++|++.|++..|. |+.|.|.++.......
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE--GENIEIVFAKPPDQKR 87 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEECCCCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC--CCEEEEEEcCCCcccc
Confidence 4799999999999999999999999999999999999999999999999999999999886 9999999998765443
No 37
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=131.58 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=68.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGR 79 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~ 79 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| .+|||||+|.+.++|.+|++.|++..+.+.|++|.|.++..+...
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 579999999999999999999999999999998 479999999999999999999886433335999999999865443
No 38
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.7e-20 Score=127.64 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=67.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+.+|+++|+++|++||+|.+|.| .+|||||+|.+.++|.+|++.|++..+.+.|++|.|.|+..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 579999999999999999999999999999988 47999999999999999999886544333599999999986543
No 39
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=1.9e-19 Score=125.70 Aligned_cols=74 Identities=27% Similarity=0.524 Sum_probs=69.9
Q ss_pred CCccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 1 MSRPIFVGNFEY-ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 1 ~s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++++|||+|||. ++|+++|+++|+.||+|..|.|.+|||||+|.+.++|.+|++.|+|..+. |+.|.|+++...
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~~ 95 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNF--GKKLILEVSSSN 95 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEET--TEECEEEECCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEecCCC
Confidence 368999999998 99999999999999999999999999999999999999999999999886 999999998753
No 40
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=123.94 Aligned_cols=74 Identities=32% Similarity=0.511 Sum_probs=70.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+++|+++|+++|++||+|..|.|.++||||+|.+.++|.+|++.||+..+. |+.|.|.++....
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK--GKRINVELSTKGQ 82 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET--TEECEEEESCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEECCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999986 9999999998653
No 41
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.7e-19 Score=125.80 Aligned_cols=75 Identities=25% Similarity=0.486 Sum_probs=70.6
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEY-ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~-~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+ .+|+++|+++|++||+|..|.|++|||||+|.+.++|.+|++.|++..+. |+.|.|+++.....
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF--GKKLILEVSSSNAR 85 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB--TTTBCEEEEECCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEEcCcCCC
Confidence 57999999998 99999999999999999999999999999999999999999999999987 99999999986543
No 42
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=124.01 Aligned_cols=75 Identities=35% Similarity=0.567 Sum_probs=70.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+++|+++|+++|++||+|..|.|.++||||+|.+.++|.+|++.||+..|. |+.|.|.++.....
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ--GKRMHVQLSTSRLR 84 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET--TEEEEEEESSCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEccCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999986 99999999986543
No 43
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-20 Score=129.86 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred CccEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYE-TRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~-~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||++ +|+++|+++|++||+|.+|.| .+|||||+|.+.++|.+|++.|++..+.+.|++|.|.++..+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 689999999998 999999999999999999998 57999999999999999999997655444599999999986543
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-20 Score=127.22 Aligned_cols=73 Identities=22% Similarity=0.432 Sum_probs=65.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCC--ccCCCceEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGR--IERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIP--FGYDRRRLSV 70 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~--v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~--~~~~g~~i~v 70 (268)
.||||+|||+++|+++|+++|++||. |.+|+| ++|||||+|.+.++|.+|++.||+.. +.++|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 58999999999999999999999995 568877 47999999999999999999999975 3457999999
Q ss_pred EEecc
Q 024366 71 EWARG 75 (268)
Q Consensus 71 ~~~~~ 75 (268)
+|++.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99874
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.6e-19 Score=123.43 Aligned_cols=76 Identities=33% Similarity=0.490 Sum_probs=70.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 85 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GRMLHVLPS 85 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS--SCEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEc
Confidence 479999999999999999999999999999998 3589999999999999999999999886 999999999
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876543
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=127.26 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=68.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|++|++.|||..|. |+.|.|.++
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~--gr~i~V~~a 83 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM--GNIIHAQLD 83 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 579999999999999999999999999999988 4689999999999999999999999986 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 47
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=123.75 Aligned_cols=74 Identities=26% Similarity=0.453 Sum_probs=70.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKY--GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~--G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+++|+++|+++|++| |.|..|.+.+|||||+|.+.++|.+|++.||+..|. |+.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD--GSPIEVTLAKPVD 90 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET--TEEEEEECCCCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC--CcEEEEEECCCCC
Confidence 4799999999999999999999999 999999999999999999999999999999999986 9999999998654
No 48
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=3.4e-19 Score=127.40 Aligned_cols=74 Identities=28% Similarity=0.613 Sum_probs=70.0
Q ss_pred CCccEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 1 MSRPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 1 ~s~tl~V~nLp~~-~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++++|||+|||+. +|+++|+++|++||+|..|.|+++||||+|.+.++|++|++.|++..|. |+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLA--GQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEET--TEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEECCCC
Confidence 3589999999999 9999999999999999999999999999999999999999999999986 999999998754
No 49
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=121.60 Aligned_cols=75 Identities=21% Similarity=0.511 Sum_probs=69.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 82 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA--GRPMRVGHV 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEEc
Confidence 589999999999999999999999999999998 3589999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 86543
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=4.5e-19 Score=120.09 Aligned_cols=73 Identities=22% Similarity=0.464 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+.+|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEEec
Confidence 468999999999999999999999999999988 2789999999999999999999999986 999999999
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 854
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=124.53 Aligned_cols=75 Identities=27% Similarity=0.513 Sum_probs=69.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~~ 92 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL--GKEVKVNWATT 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEECCC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC--CCeEEEEECCC
Confidence 579999999999999999999999999999998 3589999999999999999999999986 99999999987
Q ss_pred CCC
Q 024366 76 ERG 78 (268)
Q Consensus 76 ~~~ 78 (268)
...
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 543
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=122.42 Aligned_cols=75 Identities=28% Similarity=0.538 Sum_probs=69.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|++||+|..|.| .++||||+|.+.++|++|++.||+..|...|+.|.|.++..+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 589999999999999999999999999999999 468999999999999999999999988533899999999864
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=120.43 Aligned_cols=73 Identities=22% Similarity=0.501 Sum_probs=68.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+++|++||+|..|.| .+|+|||+|.+.++|.+|++.|||..+. |+.|.|.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~ 81 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID--GQEITATA 81 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC--CeEEEEEE
Confidence 479999999999999999999999999999988 5799999999999999999999999986 99999999
Q ss_pred eccC
Q 024366 73 ARGE 76 (268)
Q Consensus 73 ~~~~ 76 (268)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8753
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=124.89 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=69.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeC-CEEEEEEcCHHHHHHHHHhcCCCCccCCC-----ceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDR-----RRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~-g~afV~f~~~~~a~~a~~~l~~~~~~~~g-----~~i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|.+||+|..|.|.. |||||+|.+.++|++|++.||+..|. | +.|.|+++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETAYIRVKVDGP 92 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEE--CTTSCEEEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCcc--CCcCcceEEEEEeCCC
Confidence 57999999999999999999999999999999965 99999999999999999999999986 7 9999999987
Q ss_pred CCC
Q 024366 76 ERG 78 (268)
Q Consensus 76 ~~~ 78 (268)
...
T Consensus 93 ~~~ 95 (108)
T 1x4c_A 93 RSP 95 (108)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=5.9e-19 Score=120.07 Aligned_cols=71 Identities=32% Similarity=0.533 Sum_probs=67.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| .+|+|||+|.+.++|.+|++.|||..+. |+.|.|+++
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 84 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNLA 84 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEc
Confidence 479999999999999999999999999999998 5799999999999999999999999986 999999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=125.76 Aligned_cols=75 Identities=44% Similarity=0.747 Sum_probs=69.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|++||+|..|.| +++||||+|.+.++|++|++.||+..|. |+.|.|.++...
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a~~~ 99 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRLRVEFPRSG 99 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET--TEECEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEcccC
Confidence 479999999999999999999999999999998 4789999999999999999999999886 999999999865
Q ss_pred CC
Q 024366 77 RG 78 (268)
Q Consensus 77 ~~ 78 (268)
..
T Consensus 100 ~~ 101 (109)
T 1x4a_A 100 RG 101 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1e-18 Score=125.85 Aligned_cols=77 Identities=26% Similarity=0.526 Sum_probs=70.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|..||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 92 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQIRTNWA 92 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--TEECEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEc
Confidence 478999999999999999999999999999988 2589999999999999999999999886 999999999
Q ss_pred ccCCCcC
Q 024366 74 RGERGRH 80 (268)
Q Consensus 74 ~~~~~~~ 80 (268)
..+....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765543
No 58
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=124.30 Aligned_cols=75 Identities=41% Similarity=0.614 Sum_probs=69.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 90 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD--GRELRVQVA 90 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--TBCCEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEC
Confidence 479999999999999999999999999999998 3689999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 86543
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=120.95 Aligned_cols=73 Identities=27% Similarity=0.560 Sum_probs=66.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..+. |+.|.|.++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 83 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQIRTNWA 83 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEec
Confidence 478999999999999999999999999999998 3589999999999999999999999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=123.02 Aligned_cols=76 Identities=28% Similarity=0.504 Sum_probs=70.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|.+.++|.+|++.|++..|. |+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~ 92 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GRKIEVNNATA 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEccc
Confidence 5799999999999999999999999999999993 789999999999999999999999986 99999999987
Q ss_pred CCCc
Q 024366 76 ERGR 79 (268)
Q Consensus 76 ~~~~ 79 (268)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6443
No 61
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=2.7e-18 Score=121.17 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
...+.++|||.|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|++.||+..|.|+.|.|.|+.++..
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456789999999 889999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CC
Q 024366 169 ER 170 (268)
Q Consensus 169 ~~ 170 (268)
..
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=121.80 Aligned_cols=74 Identities=28% Similarity=0.517 Sum_probs=68.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++ |++..|. |+.|.|.++
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l~V~~a 86 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKVEVKRA 86 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC--CeEEEEEEC
Confidence 579999999999999999999999999999998 47899999999999999998 9999886 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
..+..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86544
No 63
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=4.7e-19 Score=126.10 Aligned_cols=73 Identities=32% Similarity=0.600 Sum_probs=69.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||.++|+++|+++|++||+|..|.|.+|||||+|.+.++|++|++.|||..|. |+.|.|.++...
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~~ 103 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA--NQPLEVVYSKLP 103 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEET--TEECEEESCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEecCC
Confidence 5799999999999999999999999999999999999999999999999999999999986 999999998864
No 64
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=123.83 Aligned_cols=75 Identities=35% Similarity=0.629 Sum_probs=69.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 89 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--GRQIRVDQA 89 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT--SCCCEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 479999999999999999999999999999998 3689999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 65
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.8e-19 Score=135.41 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=71.9
Q ss_pred EEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcC---------CCCCCCcCCCCCCcEEEEEccCCCCCCHHHH
Q 024366 41 VYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRH---------RDGSKSMANQRPTKTLFVINFDPIRTRERDI 111 (268)
Q Consensus 41 V~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~---------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l 111 (268)
.+|.+.++|..|+..|++....-.|..+...+........ ...........+.++|||+|| |..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nL-p~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSI-HEEAQEDEI 89 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESC-CTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 7899999999999999987765445556555533221100 001122234456789999999 889999999
Q ss_pred HHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 112 KRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 112 ~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.|+..+..
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999982 57999999999999999999999999999999999987654
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=123.53 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=69.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|++..|. |+.|.|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 92 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--GKPIRVNKA 92 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS--SCBCEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEC
Confidence 579999999999999999999999999999998 3589999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 86543
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=122.32 Aligned_cols=74 Identities=26% Similarity=0.457 Sum_probs=69.1
Q ss_pred CccEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEee-----CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELE----RLFSKYGRIERVDMK-----SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~----~~F~~~G~v~~i~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+ ++|++||+|..|.|. ++||||+|.+.++|.+|++.|||..|. |+.|.|.+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~--gr~l~V~~ 86 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG--SKKILVSL 86 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET--TEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEE
Confidence 3689999999999999999 999999999999995 899999999999999999999999986 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+....
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97653
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=9.9e-19 Score=121.83 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=69.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG--SRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEc
Confidence 689999999999999999999999999999998 3789999999999999999999999886 999999999
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=123.64 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=70.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|++||+|..|.|. ++||||+|.+.++|.+|++.||+..|. |+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a~~ 92 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLYVALAQR 92 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEecc
Confidence 5799999999999999999999999999999984 689999999999999999999999986 99999999987
Q ss_pred CCCc
Q 024366 76 ERGR 79 (268)
Q Consensus 76 ~~~~ 79 (268)
+...
T Consensus 93 ~~~~ 96 (103)
T 2d9p_A 93 KEER 96 (103)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6443
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=122.99 Aligned_cols=74 Identities=32% Similarity=0.552 Sum_probs=69.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR--GKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT--TBCCEEEESSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC--CceEEEEEcCCCC
Confidence 479999999999999999999999999999999 5699999999999999999999999986 9999999998653
No 71
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.3e-18 Score=123.30 Aligned_cols=75 Identities=28% Similarity=0.485 Sum_probs=69.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-------CCEEEEEEcCHHHHHHHHHhcCCCCccCCC---ceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLDNIPFGYDR---RRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g---~~i~v~ 71 (268)
+++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|.+.++|.+|++.||+..+. + +.|.|.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--gg~~~~l~V~ 92 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--PGASSSLVVK 92 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC--TTCSSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC--CCCCccEEEE
Confidence 5799999999999999999999999999999983 689999999999999999999999886 5 999999
Q ss_pred EeccCCC
Q 024366 72 WARGERG 78 (268)
Q Consensus 72 ~~~~~~~ 78 (268)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9986644
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=122.50 Aligned_cols=73 Identities=18% Similarity=0.454 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|++..|. |+.|.|.++.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~ 94 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK--ENIIKVAISN 94 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEECC
Confidence 479999999999999999999999999999998 2489999999999999999999998886 9999999988
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 73
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=119.30 Aligned_cols=71 Identities=24% Similarity=0.514 Sum_probs=66.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhc-CCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+++|+++|+++|++||+|..|.+ .+|||||+|.+.++|.+|++.| ++..+. |+.|.|+|++
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~--g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVN--GRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEET--TEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeEC--CCEEEEEecC
Confidence 479999999999999999999999999999999 5799999999999999999988 888886 9999999874
No 74
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7e-19 Score=124.00 Aligned_cols=76 Identities=32% Similarity=0.495 Sum_probs=70.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 89 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNLA 89 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET--TEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEeC
Confidence 479999999999999999999999999999998 4789999999999999999999999886 999999999
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
......
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 866443
No 75
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=124.56 Aligned_cols=72 Identities=29% Similarity=0.369 Sum_probs=68.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++|||+|||+++|+++|+++|++||+|..|.| .++||||+|.+.++|.+|++.|||..|. |+.|.|+|+...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~~ 84 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH--HVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC--CeEEEEEECCCC
Confidence 68999999999999999999999999999999 6899999999999999999999999986 999999999754
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=124.44 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=69.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||.++|+++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|||..|. |+.|.|.++.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~ 84 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH--GKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS--SSBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEECC
Confidence 479999999999999999999999999999998 3599999999999999999999999986 9999999998
Q ss_pred cCCCc
Q 024366 75 GERGR 79 (268)
Q Consensus 75 ~~~~~ 79 (268)
.....
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 66543
No 77
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=4.2e-19 Score=124.65 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=68.9
Q ss_pred CCccEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCC-
Q 024366 1 MSRPIFVGNFEY------ETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDR- 65 (268)
Q Consensus 1 ~s~tl~V~nLp~------~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g- 65 (268)
++++|||+|||. ++++++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--LK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS--SS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC--CC
Confidence 368999999999 9999999999999999999998 5799999999999999999999999986 7
Q ss_pred ceEEEEEeccC
Q 024366 66 RRLSVEWARGE 76 (268)
Q Consensus 66 ~~i~v~~~~~~ 76 (268)
+.|.|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998753
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-19 Score=124.19 Aligned_cols=75 Identities=36% Similarity=0.662 Sum_probs=69.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 92 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD--HLILNVEWA 92 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEEC
Confidence 579999999999999999999999999999998 3579999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=121.07 Aligned_cols=71 Identities=28% Similarity=0.556 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--GRVIKASIA 93 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET--TEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC--CcEEEEEec
Confidence 479999999999999999999999999999998 3589999999999999999999999886 999999997
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.9e-19 Score=121.89 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=67.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEe-eCCEEEEEEcCHHHHHHHHHhcCC-CCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR-IERVDM-KSGFAFVYFEDDRDAADAIRGLDN-IPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~-v~~i~i-~~g~afV~f~~~~~a~~a~~~l~~-~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+++|+++|+++|++||+ |..+.+ ++|||||+|.+.++|++|++.||+ ..|. |+.|.|.++..+..
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELH--GKIMEVDYSVSKKL 85 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEET--TEECEEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeEC--CEEEEEEEccCccc
Confidence 579999999999999999999999999 666555 799999999999999999999999 7775 99999999986543
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.9e-19 Score=122.31 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=69.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEE-Ee--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERV-DM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i-~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+++|++||+|..| .| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 82 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC--NRPITVSY 82 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET--TEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 5899999999999999999999999999988 77 3689999999999999999999999986 99999999
Q ss_pred eccCCC
Q 024366 73 ARGERG 78 (268)
Q Consensus 73 ~~~~~~ 78 (268)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986543
No 82
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=123.59 Aligned_cols=73 Identities=23% Similarity=0.511 Sum_probs=68.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 100 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVDWC 100 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEEEee
Confidence 468999999999999999999999999999998 2689999999999999999999999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.4e-18 Score=120.00 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=68.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|++..|. |+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~ 85 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS--GREIDVRIDRN 85 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT--TBCCCCEECSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEcCC
Confidence 579999999999999999999999999999988 3689999999999999999999999986 99999999986
Q ss_pred CC
Q 024366 76 ER 77 (268)
Q Consensus 76 ~~ 77 (268)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 84
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=121.78 Aligned_cols=75 Identities=36% Similarity=0.640 Sum_probs=69.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--e-------CCEEEEEEcCHHHHHHHHHhc-CCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--K-------SGFAFVYFEDDRDAADAIRGL-DNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~-------~g~afV~f~~~~~a~~a~~~l-~~~~~~~~g~~i~v~ 71 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| . +|||||+|.+.++|.+|++.| |+..|. |+.|.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~~l~v~ 92 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--GRRLVLE 92 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SCBCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--CCEEEEE
Confidence 579999999999999999999999999999998 2 689999999999999999999 899886 9999999
Q ss_pred EeccCCC
Q 024366 72 WARGERG 78 (268)
Q Consensus 72 ~~~~~~~ 78 (268)
++.....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986644
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=122.55 Aligned_cols=71 Identities=14% Similarity=0.341 Sum_probs=66.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|.+|++ +++..|. |+.|.|.++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~--gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK--ETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT--TTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC--CEEEEEEEch
Confidence 479999999999999999999999999999998 47999999999999999998 8998886 9999999876
Q ss_pred c
Q 024366 75 G 75 (268)
Q Consensus 75 ~ 75 (268)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 86
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=121.55 Aligned_cols=73 Identities=26% Similarity=0.500 Sum_probs=66.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++++|||+|||+++|+++|+++|++||+|. +.+ ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++..+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~~~ 94 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG--TDTLRVALARQQ 94 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS--SSCCEEEECCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEcCCC
Confidence 368999999999999999999999999996 444 5899999999999999999999999986 999999998864
No 87
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=122.71 Aligned_cols=75 Identities=19% Similarity=0.461 Sum_probs=69.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcC------CCCccCCCce
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLD------NIPFGYDRRR 67 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~------~~~~~~~g~~ 67 (268)
+++|||+|||+++|+++|+++|.+||+|..|.| ++|||||+|.+.++|.+|++.|+ +..|. |+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~--g~~ 92 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD--GRQ 92 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--SCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc--CEE
Confidence 579999999999999999999999999999998 37899999999999999999999 87775 999
Q ss_pred EEEEEeccCCC
Q 024366 68 LSVEWARGERG 78 (268)
Q Consensus 68 i~v~~~~~~~~ 78 (268)
|.|.++..+..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999986543
No 88
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=120.61 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=68.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-----------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-----------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
+++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|.+.++|.+|++.||+..|. |+.|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V 82 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GHKLEV 82 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEE
Confidence 5799999999999999999999999999999882 379999999999999999999999986 999999
Q ss_pred EEeccCCC
Q 024366 71 EWARGERG 78 (268)
Q Consensus 71 ~~~~~~~~ 78 (268)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99986543
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=1.4e-18 Score=125.24 Aligned_cols=75 Identities=21% Similarity=0.469 Sum_probs=69.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a 102 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLKVQLK 102 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEEc
Confidence 479999999999999999999999999999988 3479999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 86543
No 90
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=116.68 Aligned_cols=79 Identities=30% Similarity=0.479 Sum_probs=74.0
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCCC
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 169 (268)
..+.++|||+|| |..+++++|+++|++||.|..+.+.++||||+|.+.++|++|++.||+..++|+.|.|.|+.++...
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 456889999999 8899999999999999999999999999999999999999999999999999999999999876543
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=120.92 Aligned_cols=72 Identities=33% Similarity=0.509 Sum_probs=66.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 92 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRIRVSGP 92 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEec
Confidence 478999999999999999999999999999988 3579999999999999999999999886 999999998
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 92
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=122.32 Aligned_cols=74 Identities=20% Similarity=0.428 Sum_probs=67.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCee-EEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCce----
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIE-RVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR---- 67 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~-~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~---- 67 (268)
++++|||+|||+++|+++|+++|++||+|. .|.| ++|||||+|.+.++|++|++.||+..+. |+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~ 85 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--GATPAKR 85 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--SCSSCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--CCCccee
Confidence 468999999999999999999999999999 9988 3489999999999999999999999886 788
Q ss_pred EEEEEeccC
Q 024366 68 LSVEWARGE 76 (268)
Q Consensus 68 i~v~~~~~~ 76 (268)
|.|.|+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=123.20 Aligned_cols=75 Identities=19% Similarity=0.442 Sum_probs=69.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.|+.....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE--GHVVKCYWGKESPD 101 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEECCCCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEecCCCCC
Confidence 479999999999999999999999999999999 4799999999999999999999999886 99999999986543
No 94
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.3e-18 Score=122.22 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=69.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCc-cCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPF-GYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~-~~~g~~i~v~~ 72 (268)
+++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..+ .+.++.|.|.+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 478999999999999999999999999999998 368999999999999999999999875 32489999999
Q ss_pred eccCCC
Q 024366 73 ARGERG 78 (268)
Q Consensus 73 ~~~~~~ 78 (268)
+..+..
T Consensus 93 a~~~~~ 98 (106)
T 2dgp_A 93 ADSESR 98 (106)
T ss_dssp CCCCSC
T ss_pred CCcccc
Confidence 986544
No 95
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=9.7e-19 Score=124.54 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=67.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
..+|||+|||+++|+++|+++|++|| +|..+.| ++|||||+|.+.++|++|++.|||..|. |+.|.|+++...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~--Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR--GSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET--TEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEECCCC
Confidence 36899999999999999999999999 9999998 4899999999999999999999999986 999999998743
No 96
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=7e-19 Score=123.78 Aligned_cols=72 Identities=26% Similarity=0.528 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||.++|+++|+++|++||+|.+|.| .+|||||+|.+.++|.+|++.|||..+. |+.|.|.|++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ--GRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEET--TEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEeccC
Confidence 579999999999999999999999999999998 6899999999999999999999999986 99999999864
No 97
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=121.87 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=68.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||.++|+++|+++|.+||+|..|.| ++|||||+|.+.++|++|++.||+..|. |+.|.|.++.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~ 92 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMHVKMDE 92 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEEEEEcc
Confidence 579999999999999999999999999999988 2689999999999999999999999986 9999999987
Q ss_pred cCC
Q 024366 75 GER 77 (268)
Q Consensus 75 ~~~ 77 (268)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-18 Score=119.59 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=71.3
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeC-CeEEEEeccHHHHHHHHHhhCCCccCC-----cEEEEEEe
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVD-----RVISVEYA 163 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~-~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~i~v~~a 163 (268)
....++|||.|| |..+++++|+++|++||.|..|.|.. +||||+|.+.++|++||+.|||..|.| +.|.|+++
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 345789999999 89999999999999999999999965 999999999999999999999999999 99999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
.++.
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7643
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=120.68 Aligned_cols=71 Identities=31% Similarity=0.487 Sum_probs=66.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.+++
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY--GRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET--TEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CCEEEEEEcC
Confidence 479999999999999999999999999999998 2689999999999999999999999986 9999999876
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.8e-18 Score=125.69 Aligned_cols=75 Identities=23% Similarity=0.486 Sum_probs=69.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 99 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISVDWC 99 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEEe
Confidence 468999999999999999999999999999998 2789999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
..+..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 86543
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=1.1e-18 Score=129.14 Aligned_cols=118 Identities=24% Similarity=0.291 Sum_probs=73.6
Q ss_pred CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 37 g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
.++|++|.++..+..|++.+++.... |.. .+.+ ........+.++|||+|| |..+++++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~--g~~-~~~~-----------~~~~~~~~~~~~l~V~nL-p~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQM--GRG-SMSY-----------GRPPPDVEGMTSLKVDNL-TYRTSPDTLRRVFE 69 (135)
T ss_dssp ---------------------------------CCS-----------CCSCSSGGGCCCEEEECC-CSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCC--CCC-CCCc-----------CCCCCCCCCCCEEEEeCC-CCCCCHHHHHHHHH
Confidence 46788888888999999888877643 211 1111 111223445789999999 88999999999999
Q ss_pred cCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCCC
Q 024366 117 PYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSE 169 (268)
Q Consensus 117 ~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 169 (268)
.||.|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|.|+......
T Consensus 70 ~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 70 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp GGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred hcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999998 3569999999999999999999999999999999999875543
No 102
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.5e-18 Score=122.87 Aligned_cols=73 Identities=23% Similarity=0.502 Sum_probs=68.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 103 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQVDWC 103 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEc
Confidence 468999999999999999999999999999998 3699999999999999999999999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 864
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=122.39 Aligned_cols=73 Identities=23% Similarity=0.556 Sum_probs=67.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~V~~a 103 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--GRPMKVGHV 103 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEEc
Confidence 478999999999999999999999999999988 3689999999999999999999999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 104
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.2e-18 Score=116.17 Aligned_cols=79 Identities=23% Similarity=0.452 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
...+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|++.|||..+.|+.|.|.++.++..
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 4456889999999 889999999999999999999999999999999999999999999999999999999999977654
No 105
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=125.23 Aligned_cols=74 Identities=22% Similarity=0.395 Sum_probs=67.9
Q ss_pred CccEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELE----RLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~----~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+.+++++|+ ++|++||+|.+|.+ ++|||||+|.+.++|..|++.|||..|. |++|.|.|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--gr~l~V~~ 106 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--GNPLVITF 106 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT--TSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC--CCEEEEEE
Confidence 5799999999999999876 69999999999988 4799999999999999999999999986 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+..+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98653
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=5e-19 Score=121.83 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=62.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYG--RIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G--~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.+|||+|||+++|+++|+++|++|| +|..|.| ++|||||+|.+.++|++|++.|||..|. |+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~--gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS--SCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC--CEEEEEEE
Confidence 4799999999999999999999999 9999887 4689999999999999999999999986 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+.+..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 88653
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=123.38 Aligned_cols=73 Identities=29% Similarity=0.551 Sum_probs=68.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||.++|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|+|..|. |+.|.|.++..
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~~ 106 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GRKIEVNNATA 106 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET--TEECEEEECCC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEECCC
Confidence 5799999999999999999999999999999983 799999999999999999999999986 99999999875
Q ss_pred C
Q 024366 76 E 76 (268)
Q Consensus 76 ~ 76 (268)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 108
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=119.90 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=68.2
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|+|+.|.|+||
T Consensus 18 ~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4678999999 889999999999999999999988 3469999999999999999999999999999999999
Q ss_pred ec
Q 024366 164 LK 165 (268)
Q Consensus 164 ~~ 165 (268)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=118.05 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=70.8
Q ss_pred CCCCCcEEEEEccCCC-CCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCC--ccCCcEEEEEEe
Q 024366 89 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYA 163 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~-~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~i~v~~a 163 (268)
...+..+|||+|| |. .+++++|+++|++||.|..|.| .++||||+|++.++|.+|++.||+. .|.|+.|.|+|+
T Consensus 11 ~~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 3447899999999 88 9999999999999999999999 4589999999999999999999864 499999999999
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x4d_A 90 QKYKR 94 (102)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 86543
No 110
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=2.7e-18 Score=122.01 Aligned_cols=71 Identities=21% Similarity=0.534 Sum_probs=66.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee-------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK-------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|++..|. |+.|.|.++.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD--GRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEeC
Confidence 5789999999999999999999999999999883 789999999999999999999999986 9999999985
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=117.46 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=71.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCc--cCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~--~~g~~i~v~~a~ 164 (268)
..+|+.+|||+|| |..+++++|+++|++||.|..+.+ .+|+|||+|++.++|.+|++.|++.. +.|+.|.|+|++
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4567899999999 899999999999999999999998 58999999999999999999999876 789999999997
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 112
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=6.1e-18 Score=123.84 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=73.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+..+|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4456789999999 889999999999999999999998 2789999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
+|+..+...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999877654
No 113
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.3e-18 Score=118.54 Aligned_cols=80 Identities=25% Similarity=0.569 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEccCCC-CCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 89 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~-~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
...+.++|||+|| |. .+++++|+++|++||.|..+.+.++||||+|.+.++|++|++.|||..+.|+.|.|.++....
T Consensus 6 ~~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 6 NIPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ---CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred cCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4557899999999 87 999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 024366 168 SE 169 (268)
Q Consensus 168 ~~ 169 (268)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 114
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=2.2e-18 Score=126.52 Aligned_cols=73 Identities=33% Similarity=0.540 Sum_probs=68.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|++..|. |+.|.|.++
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l~V~~a 123 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRIRVDFS 123 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--SSCCEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEe
Confidence 579999999999999999999999999999998 3689999999999999999999999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 754
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=3.9e-18 Score=119.00 Aligned_cols=74 Identities=26% Similarity=0.607 Sum_probs=69.1
Q ss_pred CccEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELE----RLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~----~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+ ++|++||+|..|.| .+|||||+|.+.++|..|++.|||..+. |+.|.|.+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 85 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--DKPMRIQY 85 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC--CcEEEEEE
Confidence 5899999999999999999 99999999999998 4799999999999999999999999986 99999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+....
T Consensus 86 a~~~~ 90 (97)
T 1nu4_A 86 AKTDS 90 (97)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 98653
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=116.29 Aligned_cols=79 Identities=30% Similarity=0.442 Sum_probs=73.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccC--CCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~--g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+.++|||+|| |..+++++|+++|++| |.|..+.+.++||||+|.+.++|++|++.|||..|.|+.|.|.|+.+.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4456889999999 8899999999999999 999999999999999999999999999999999999999999999765
Q ss_pred CC
Q 024366 167 DS 168 (268)
Q Consensus 167 ~~ 168 (268)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=121.64 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=68.1
Q ss_pred CCccEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEee------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCc-e
Q 024366 1 MSRPIFVGNFEYET------RQSELERLFSKYGRIERVDMK------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRR-R 67 (268)
Q Consensus 1 ~s~tl~V~nLp~~~------t~~~l~~~F~~~G~v~~i~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~-~ 67 (268)
++++|||+|||+.+ |+++|+++|++||+|..|.|. +|||||+|.+.++|.+|++.|||..|. |+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~--g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS--TTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC--CCce
Confidence 46899999999999 789999999999999999983 799999999999999999999999986 87 9
Q ss_pred EEEEEeccC
Q 024366 68 LSVEWARGE 76 (268)
Q Consensus 68 i~v~~~~~~ 76 (268)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998743
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=121.73 Aligned_cols=74 Identities=32% Similarity=0.625 Sum_probs=68.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 85 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS--GRALRVDNA 85 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS--SSCBEEEET
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEEEeC
Confidence 479999999999999999999999999999988 2689999999999999999999999986 999999998
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8653
No 119
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=119.53 Aligned_cols=71 Identities=25% Similarity=0.384 Sum_probs=65.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER--------VDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDR 65 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g 65 (268)
+++|||+|||.++|+++|+++|++||.|.. |.| .+|||||+|.+.++|.+|++.|||..+. |
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~--g 90 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS--G 90 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS--S
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--C
Confidence 479999999999999999999999999998 877 3689999999999999999999999886 9
Q ss_pred ceEEEEEec
Q 024366 66 RRLSVEWAR 74 (268)
Q Consensus 66 ~~i~v~~~~ 74 (268)
+.|.|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 120
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=121.61 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=68.5
Q ss_pred CccEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCc---cCCCceEEEEEec
Q 024366 2 SRPIFV--GNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPF---GYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V--~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~---~~~g~~i~v~~~~ 74 (268)
+++||| +||++++|+++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|||..+ ...+.+|.|.++.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 578999 779999999999999999999999998 578999999999999999999999976 2248899999988
Q ss_pred cCCC
Q 024366 75 GERG 78 (268)
Q Consensus 75 ~~~~ 78 (268)
..++
T Consensus 105 ~~p~ 108 (114)
T 2cq2_A 105 KVQW 108 (114)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 5543
No 121
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=119.94 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=69.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCC-ccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSK-YGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIP-FGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~-~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+++|.+ ||+|..|.| ++|||||+|.+.++|.+|++.|++.. |. |+.|.|.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~--g~~l~v~~ 86 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG--SKPVRLSV 86 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS--SSCCCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC--CEeEEEEE
Confidence 579999999999999999999999 999999998 47899999999999999999999998 76 99999999
Q ss_pred eccCCC
Q 024366 73 ARGERG 78 (268)
Q Consensus 73 ~~~~~~ 78 (268)
+.....
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 976543
No 122
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=122.04 Aligned_cols=73 Identities=27% Similarity=0.445 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|++|++.|++ .|. |+.|.|.++
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~l~V~~a 93 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--GRKANVNLA 93 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC--CEEEEEEEc
Confidence 479999999999999999999999999999998 358999999999999999999998 554 999999999
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 7543
No 123
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=115.22 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=73.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
...+.++|||+|| |..+++++|+++|++||.|..+.+.++||||+|.+.++|++|++.|||..++|+.|.|.++.+...
T Consensus 5 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 5 SSGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 3456789999999 889999999999999999999999999999999999999999999999999999999999977643
No 124
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=117.32 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
....+.++|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.||+..|+|+.|.|+|
T Consensus 17 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 17 PAGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34556789999999 889999999999999999999999 467999999999999999999999999999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 977653
No 125
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=5.1e-18 Score=116.46 Aligned_cols=71 Identities=34% Similarity=0.615 Sum_probs=66.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|+ .|++..+. |+.|.|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~--g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR--GRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET--TEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC--CcEEEEEEc
Confidence 379999999999999999999999999999988 2689999999999999999 89999986 999999998
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
..
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 75
No 126
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=122.43 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=68.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIE--------RVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDR 65 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~--------~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g 65 (268)
+++|||+|||+++|+++|+++|++||+|. .|.| .+|||||+|.+.++|.+|++.||+..|. |
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g 92 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ--G 92 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET--T
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC--C
Confidence 47999999999999999999999999998 5777 3689999999999999999999999986 9
Q ss_pred ceEEEEEeccCCC
Q 024366 66 RRLSVEWARGERG 78 (268)
Q Consensus 66 ~~i~v~~~~~~~~ 78 (268)
+.|.|.++..+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999986543
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=115.66 Aligned_cols=67 Identities=22% Similarity=0.433 Sum_probs=61.7
Q ss_pred CccEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCc-eE
Q 024366 2 SRPIFVGNFEYET------RQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRR-RL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~------t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~-~i 68 (268)
+++|||+|||..+ |+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..+. |+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--KQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS--SSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC--CceeE
Confidence 5799999999999 78999999999999999998 3799999999999999999999999986 77 77
Q ss_pred EE
Q 024366 69 SV 70 (268)
Q Consensus 69 ~v 70 (268)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 128
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-18 Score=123.93 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=68.3
Q ss_pred CccEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEee-----------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCce
Q 024366 2 SRPIFVGNFEYETRQSELE---RLFSKYGRIERVDMK-----------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~---~~F~~~G~v~~i~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~ 67 (268)
.++|||+|||+++|+++|. ++|.+||+|..|.|. +|||||+|.+.++|++|++.||+..|. |+.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--gr~ 92 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--GRT 92 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--TEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--CEE
Confidence 4799999999999999999 999999999999982 269999999999999999999999986 999
Q ss_pred EEEEEeccCC
Q 024366 68 LSVEWARGER 77 (268)
Q Consensus 68 i~v~~~~~~~ 77 (268)
|.|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998664
No 129
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.9e-18 Score=123.41 Aligned_cols=71 Identities=23% Similarity=0.471 Sum_probs=65.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|+++
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a 117 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRLKVQLK 117 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEECCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEec
Confidence 478999999999999999999999999999998 3689999999999999999999999986 999999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 130
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=118.72 Aligned_cols=74 Identities=24% Similarity=0.527 Sum_probs=67.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee---------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMK---------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
+++|||+|||+++|+++|+++|++|| |..|.|. +|||||+|.+.++|++|+ .|++..|. |+.|.|.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~~ 90 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NKRIRVDV 90 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET--TEECEEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC--CcEEEEEE
Confidence 47999999999999999999999999 9999982 689999999999999999 89999986 99999999
Q ss_pred eccCCCc
Q 024366 73 ARGERGR 79 (268)
Q Consensus 73 ~~~~~~~ 79 (268)
+..+...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876443
No 131
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=7.5e-18 Score=121.27 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeC-CEEEEEEcCHHHHHHHHHhcCCCCccCCCce-----EEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS-GFAFVYFEDDRDAADAIRGLDNIPFGYDRRR-----LSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~-g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~-----i~v~~~~~ 75 (268)
+++|||+|||+++|+++|+++|++||+|..|.|.. |||||+|.+.++|++|++.||+..|. |+. |.|..+..
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR--SHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCC--CTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEEC--CcEeeeEEEEeccCCC
Confidence 36899999999999999999999999999999966 99999999999999999999999986 777 66666554
No 132
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=113.85 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=71.6
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
.+.++|||.|| |..+++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999 889999999999999999999998 356999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024366 163 ALKDDSE 169 (268)
Q Consensus 163 a~~~~~~ 169 (268)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 133
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-17 Score=113.94 Aligned_cols=81 Identities=20% Similarity=0.384 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhC--CCccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTD--RSKLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~a~ 164 (268)
...++++|||+|| |..+++++|+++|++||.|..|.+ .+|||||+|++.++|++|++.|+ +..+.|+.|.|.|+.
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4467899999999 889999999999999999999988 46899999999999999999874 678999999999998
Q ss_pred cCCCCC
Q 024366 165 KDDSER 170 (268)
Q Consensus 165 ~~~~~~ 170 (268)
.+....
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 766543
No 134
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=118.44 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=68.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEee---------CCEEEEEEcCHHHHHHHHHhcC--CCCccCCCceEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR-IERVDMK---------SGFAFVYFEDDRDAADAIRGLD--NIPFGYDRRRLS 69 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~-v~~i~i~---------~g~afV~f~~~~~a~~a~~~l~--~~~~~~~g~~i~ 69 (268)
+++|||+|||+++|+++|+++|.+||+ |..|.|. +|||||+|.+.++|.+|++.|+ +..+. |+.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~~l~ 85 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GHQIA 85 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TBCCE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec--CCeEE
Confidence 478999999999999999999999998 9999883 6899999999999999999996 46665 99999
Q ss_pred EEEeccCCCc
Q 024366 70 VEWARGERGR 79 (268)
Q Consensus 70 v~~~~~~~~~ 79 (268)
|.|+......
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876543
No 135
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=118.32 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..+..+|||+|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999 8899999999999999999999993 48999999999999999999999999999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
+.++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986553
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=9.3e-18 Score=127.50 Aligned_cols=73 Identities=32% Similarity=0.607 Sum_probs=68.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| +++||||+|.+.++|++|++.||+..|. |+.|.|+|+
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 116 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD--DRIIRTDWD 116 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET--TEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 579999999999999999999999999999998 3589999999999999999999999986 999999999
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 854
No 137
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.3e-17 Score=126.68 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=72.1
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 889999999999999999999998 3469999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
+|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986543
No 138
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=125.02 Aligned_cols=76 Identities=32% Similarity=0.550 Sum_probs=69.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 119 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NKRLKVALA 119 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--SCEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 479999999999999999999999999999988 3789999999999999999999999886 999999999
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876443
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-17 Score=114.78 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCC--ccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~--~~~g~~i~v~~a~ 164 (268)
...+.++|||+|| |..+++++|+++|++||.|..|.+ .++||||+|++.++|.+|++.|++. .|.|+.|.|+|+.
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 4567899999999 889999999999999999999998 4789999999999999999988764 5999999999998
Q ss_pred cCCCC
Q 024366 165 KDDSE 169 (268)
Q Consensus 165 ~~~~~ 169 (268)
.+...
T Consensus 90 ~~~~~ 94 (104)
T 1wex_A 90 SKRIT 94 (104)
T ss_dssp SSSCC
T ss_pred Ccccc
Confidence 76543
No 140
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=121.21 Aligned_cols=75 Identities=20% Similarity=0.490 Sum_probs=69.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+.+|+++|+++|+.||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++.
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a~ 112 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVA 112 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEEEEEeC
Confidence 479999999999999999999999999999998 4689999999999999999999999886 9999999998
Q ss_pred cCCC
Q 024366 75 GERG 78 (268)
Q Consensus 75 ~~~~ 78 (268)
....
T Consensus 113 ~~~~ 116 (124)
T 2kt5_A 113 SQID 116 (124)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 141
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5e-18 Score=122.06 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=67.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|..||+|..|.| .+|||||+|.+.++|.+|+ .||+..|. |+.|.|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET--TEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC--CeEEEEEec
Confidence 368999999999999999999999999999998 3689999999999999999 89999886 999999998
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7643
No 142
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1e-17 Score=118.24 Aligned_cols=73 Identities=27% Similarity=0.560 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++|| |..|.| ++|||||+|.+.++|.+|+ .||+..|. |+.|.|.++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~~a 90 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG--DRSLRVDIA 90 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET--TEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC--CeEEEEEEe
Confidence 47999999999999999999999997 999988 3679999999999999999 89999886 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86543
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.6e-18 Score=112.82 Aligned_cols=67 Identities=21% Similarity=0.466 Sum_probs=62.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|++|++ |++..+. |+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~--g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN--NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS--SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC--CEEEEEEeC
Confidence 5999999999999999999999999999988 35899999999999999997 9999986 999999875
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.1e-17 Score=118.00 Aligned_cols=78 Identities=19% Similarity=0.399 Sum_probs=72.3
Q ss_pred CCCCcEEEEEccCCCC-CCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 90 QRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~-~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
..+.++|||+|| |.. +++++|+++|++||.|..|.+.++||||+|.+.++|++|++.|||..|+|+.|.|.|+.....
T Consensus 24 ~~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 24 KSINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TTCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 345689999999 788 999999999999999999999999999999999999999999999999999999999976543
No 145
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=111.65 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=65.9
Q ss_pred Ccc-EEEcCCCCCCCHHH----HHHHHhcC-CCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRP-IFVGNFEYETRQSE----LERLFSKY-GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~t-l~V~nLp~~~t~~~----l~~~F~~~-G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
|.| |||+|||..+++++ |+++|++| |+|.+| ..|+|||+|.+.++|..|++.|+|..+. |++|.|.+++.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~--gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDVF--GNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSS--SSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccC--CceEEEEecCC
Confidence 445 99999999999998 55899999 599988 4599999999999999999999999997 99999999987
Q ss_pred CCCc
Q 024366 76 ERGR 79 (268)
Q Consensus 76 ~~~~ 79 (268)
....
T Consensus 84 ~sd~ 87 (96)
T 2diu_A 84 NREL 87 (96)
T ss_dssp SCCC
T ss_pred Ccce
Confidence 6543
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=115.35 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=67.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|| ++|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++.....
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNIARKQPM 89 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEET--TEEEEEECCSSCCC
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEECCCCCC
Confidence 579999996 8999999999999999999998 5899999999999999999999999886 99999999986543
No 147
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-17 Score=114.54 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.||+..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4456899999999 889999999999999999999998 348999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024366 163 ALKDDSE 169 (268)
Q Consensus 163 a~~~~~~ 169 (268)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 148
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=118.34 Aligned_cols=73 Identities=22% Similarity=0.454 Sum_probs=65.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++.+ +..| +|+.|.|.++
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V~~a 101 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDPKVA 101 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEEEEc
Confidence 479999999999999999999999999999998 3689999999999999999876 4555 4999999998
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=6.4e-18 Score=125.08 Aligned_cols=74 Identities=42% Similarity=0.671 Sum_probs=68.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l~V~~a 124 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELRVQMA 124 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS--SSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEEC
Confidence 478999999999999999999999999999998 3679999999999999999999999986 999999999
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 150
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=2.2e-18 Score=119.74 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=65.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..+.+ ++|||||+|.++++|++|++.||+..|. |+.|.|+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~l~v~~a 92 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKLSGP 92 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEEec
Confidence 478999999999999999999999999976555 4689999999999999999999999986 999999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=114.16 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=62.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
..+|||+|||+++|+++|+++|++||+|.+|.| ++|||||+|.+.++|.+ |++..+.+.|+.|.|.++.++
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 479999999999999999999999999999999 48999999999999883 567776667999999998754
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=116.74 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEccCCCC-CCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCC--CccCCcEEEEEEe
Q 024366 89 NQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYA 163 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~-~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~a 163 (268)
...++++|||+|| |.. +++++|+++|++||.|..|.| .++||||+|++.++|++|++.|++ ..|.|+.|.|+|+
T Consensus 21 ~~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 21 KQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SSCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred cCCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 3567899999999 887 999999999999999999999 579999999999999999998864 5699999999999
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
.....
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76553
No 153
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.8e-17 Score=113.10 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
....+.++|||.|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999 8899999999999999999999994 7899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 024366 162 YALKDDSE 169 (268)
Q Consensus 162 ~a~~~~~~ 169 (268)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99877644
No 154
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.5e-18 Score=113.01 Aligned_cols=68 Identities=21% Similarity=0.458 Sum_probs=62.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
++|||+|||+++|+++|+++|++||+|..|.+ ++|+|||+|.+.++|.+|++.++ ..+. |+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~--g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD--SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS--SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC--CEEEEEEec
Confidence 58999999999999999999999999999988 36899999999999999999888 6665 999999986
No 155
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=120.58 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=67.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++. ++..|. |+.|.|.++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~l~V~~a 92 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--GRNIDPKPC 92 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET--TEEEBCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC--CEEEEEEEc
Confidence 479999999999999999999999999999988 357999999999999999997 888876 999999998
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
..+...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 866443
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=7e-18 Score=115.55 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=67.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|++| +|..|.| ++|||||+|.+.++|.+|++.|||..+. |+.|.|+++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFR--GKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEET--TEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEEEcCCC
Confidence 5799999999999999999999999 9999888 6899999999999999999999999986 999999998643
No 157
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=119.34 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=65.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|.+||+|..+.+ ++|||||+|.+.++|++|++.||+..|. |+.|.|+++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a 92 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKLVLG 92 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC--CeEEEEEEc
Confidence 468999999999999999999999999975544 4699999999999999999999999886 999999998
Q ss_pred cc
Q 024366 74 RG 75 (268)
Q Consensus 74 ~~ 75 (268)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=1.6e-17 Score=125.27 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=68.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
.+|||+||++.+|+++|+++|++||+|+.|.| .++||||+|.+.++|++|++.|||..|..+++.|+|+|++.+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 36899999999999999999999999999998 3569999999999999999999999996445999999998653
No 159
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=126.72 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=67.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYG--RIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G--~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
++|||+|||+++|+++|+++|+.|| +|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~l~V~~ 133 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--GEKVDVRP 133 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--TEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEeEEEE
Confidence 6899999999999999999999999 9999988 4689999999999999999999999986 99999999
Q ss_pred eccC
Q 024366 73 ARGE 76 (268)
Q Consensus 73 ~~~~ 76 (268)
+..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8743
No 160
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=114.59 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=73.1
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 8 ~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456889999999 889999999999999999999999 3579999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876643
No 161
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=115.61 Aligned_cols=80 Identities=34% Similarity=0.444 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+..+|||+|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456899999999 889999999999999999999998 3589999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999865543
No 162
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=3.1e-17 Score=114.38 Aligned_cols=78 Identities=23% Similarity=0.546 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEccCCC-CCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 88 ANQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~-~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
....+.++|||+|| +. .+++++|+++|+.||.|..+.+.+|||||+|.+.++|++|++.|||..++|+.|.|+++...
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34557899999999 87 99999999999999999999999999999999999999999999999999999999998754
No 163
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.1e-17 Score=112.69 Aligned_cols=79 Identities=23% Similarity=0.453 Sum_probs=72.1
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++ ||+..|+|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3456789999999 889999999999999999999998 36899999999999999999 9999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876543
No 164
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=117.91 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=69.8
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
++.++|||.|| +..+++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999 889999999999999999999988 457999999999999999999999999999999999
Q ss_pred eecC
Q 024366 163 ALKD 166 (268)
Q Consensus 163 a~~~ 166 (268)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9643
No 165
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-18 Score=117.59 Aligned_cols=79 Identities=19% Similarity=0.380 Sum_probs=71.4
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhC--CCccCCcEEEEEEeec
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTD--RSKLVDRVISVEYALK 165 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~i~v~~a~~ 165 (268)
..+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|++.++|++|++.|+ +..|.|+.|.|.|+..
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 446889999999 889999999999999999999999 47999999999999999999886 4789999999999987
Q ss_pred CCCC
Q 024366 166 DDSE 169 (268)
Q Consensus 166 ~~~~ 169 (268)
+...
T Consensus 92 ~~~~ 95 (105)
T 1sjq_A 92 KELK 95 (105)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6544
No 166
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.7e-17 Score=119.37 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=64.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeC-CeEEEEeccHHHHHHHHHhhCCCccCCcE-----EEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVDRV-----ISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~-~~afV~f~~~~~a~~A~~~l~g~~~~g~~-----i~v~~a~ 164 (268)
..++|||.|| |..+++++|+++|++||.|..|.|.. +||||+|.+.++|++||+.|||..|+|+. |.|..+.
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4689999999 89999999999999999999999965 99999999999999999999999999998 5555544
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.3e-17 Score=111.59 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=68.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
.+..|+|+|| +..+++++|+++|.+||+|..+.+ ++|||||+|.+.++|.+|++.||+..+.|++|.|++|.
T Consensus 6 ~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4678999999 789999999999999999999988 89999999999999999999999999999999999984
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.6e-18 Score=120.77 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=67.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRI----ERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v----~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|.+||.| ..+.+ ++|||||+|.+.++|.+|++.|++..|. |+.|.|.++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~v~~a 102 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY--GKILVIEFG 102 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS--SCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEEc
Confidence 4799999999999999999999999998 45555 4799999999999999999999999986 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 86644
No 169
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-17 Score=113.17 Aligned_cols=79 Identities=27% Similarity=0.416 Sum_probs=72.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
..+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346789999999 889999999999999999999998 35899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 024366 162 YALKDDSE 169 (268)
Q Consensus 162 ~a~~~~~~ 169 (268)
++..+...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877643
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-17 Score=120.30 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+.++|||+|| +..+++++|+++|+.||.|..|.| .++||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 37 ~~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556789999999 889999999999999999999988 367999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++......
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 171
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=114.62 Aligned_cols=80 Identities=25% Similarity=0.491 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4556899999999 889999999999999999999998 2459999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 172
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-17 Score=113.95 Aligned_cols=80 Identities=23% Similarity=0.463 Sum_probs=73.0
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456889999999 8899999999999999999999984 67999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024366 163 ALKDDSE 169 (268)
Q Consensus 163 a~~~~~~ 169 (268)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876543
No 173
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.4e-17 Score=125.73 Aligned_cols=73 Identities=45% Similarity=0.699 Sum_probs=68.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|..|++.|||..|. |+.|.|.++.++
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~~ 148 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC--GCRVRVELSNGE 148 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS--SSCCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEEEcCCC
Confidence 479999999999999999999999999999999 4899999999999999999999999886 999999998754
No 174
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-18 Score=117.77 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=64.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..+. |+.|++.++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~~~ 82 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQMAKQSGP 82 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EESCCSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eEEEeecCC
Confidence 579999999999999999999999999999988 3689999999999999999999999886 888777654
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-17 Score=114.29 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+..+|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.||+..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556899999999 889999999999999999999998 357999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876543
No 176
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.6e-18 Score=117.91 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=66.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+++|+++|+++|.+||.|.-+.. .+|||||+|.+.++|++|++.||+..|. |+.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE--GRAIRLELQGPRG 92 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET--TEEEEEEECSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC--CeEEEEEEcCCCC
Confidence 579999999999999999999999998843322 5799999999999999999999999886 9999999998654
No 177
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=118.01 Aligned_cols=71 Identities=27% Similarity=0.532 Sum_probs=65.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.++|||+|||.++|+++|+++|+.|| |..|.| ++|||||+|.+.++|.+|+ .|+|..|. |+.|.|.+
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~--g~~l~V~~ 94 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NRRIRVDV 94 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT--TBCCCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC--CeEEEEEe
Confidence 47999999999999999999999999 999998 2689999999999999999 89999986 99999999
Q ss_pred eccC
Q 024366 73 ARGE 76 (268)
Q Consensus 73 ~~~~ 76 (268)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 178
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.4e-17 Score=113.64 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccC--CcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~--g~~i~v~~a~ 164 (268)
...+.++|||.|| |..+++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.||+..+. |+.|.|.|+.
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3456789999999 889999999999999999999999 4679999999999999999999999999 9999999998
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 179
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.3e-16 Score=114.72 Aligned_cols=80 Identities=23% Similarity=0.402 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+..+|||.|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456889999999 8899999999999999999999882 469999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+..+...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876644
No 180
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=1.8e-17 Score=113.26 Aligned_cols=69 Identities=22% Similarity=0.527 Sum_probs=62.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++ +++..|. |+.|.|.++
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i~v~~A 87 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD--GRVIDPKKA 87 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET--TEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC--CEEEEEEeC
Confidence 479999999999999999999999999999988 36899999999999999996 5776664 999999875
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=2.5e-17 Score=119.71 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=66.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCE-EEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGF-AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
.|||+||++.+|+++|.++|++||+|..|.| .+|+ |||+|.+.++|.+|++.|||..|....+.|+|+|++..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 5789999999999999999999999999988 4577 99999999999999999999999732389999999865
No 182
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-17 Score=114.31 Aligned_cols=78 Identities=27% Similarity=0.534 Sum_probs=71.2
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEE-EE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~-~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
.+.++|||.|| |..+++++|+++|+.||.|..+ .| .++||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 8899999999999999999888 77 35799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 024366 162 YALKDDSE 169 (268)
Q Consensus 162 ~a~~~~~~ 169 (268)
|+.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 183
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.4e-17 Score=127.62 Aligned_cols=74 Identities=23% Similarity=0.491 Sum_probs=68.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|.+||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.|+
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~V~~a 149 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQVDWC 149 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEEe
Confidence 368999999999999999999999999999998 2689999999999999999999999886 999999999
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8654
No 184
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=2.7e-17 Score=125.16 Aligned_cols=75 Identities=41% Similarity=0.655 Sum_probs=69.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 147 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GRELRVQMA 147 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--SSEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEC
Confidence 478999999999999999999999999999998 4689999999999999999999999886 999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 185
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=115.50 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=65.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER-VDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~-i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+++|+++|+++|.+||.|.. |.| ++|||||+|.++++|.+|++. ++..|. |+.|.|.++
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~--gr~i~v~~~ 91 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG--HRYIEIFKS 91 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS--SSCCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC--CcEEEEEEC
Confidence 478999999999999999999999999987 777 479999999999999999986 888886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 186
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.9e-18 Score=117.92 Aligned_cols=72 Identities=33% Similarity=0.645 Sum_probs=64.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.+ |.+|++.|||..+. |+.|.|.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEEcC
Confidence 68999999999999999999999999999998 3689999999999 99999999999986 9999999988
Q ss_pred cCC
Q 024366 75 GER 77 (268)
Q Consensus 75 ~~~ 77 (268)
...
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 187
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=114.91 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=73.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 8 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456889999999 889999999999999999999998 4679999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876644
No 188
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4e-17 Score=118.10 Aligned_cols=73 Identities=25% Similarity=0.311 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCE-EEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--KSGF-AFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
|||+||++.+|+++|+++|++||+|..|.| ..|| |||+|.+.++|.+|++.|||..|....+.|.|++++...
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 679999999999999999999999999988 3486 999999999999999999999997323799999998653
No 189
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-17 Score=112.81 Aligned_cols=80 Identities=29% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+.++|||+|| |..+++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.|||..|.|+.|.|.|+.++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4456789999999 889999999999999999999999 4699999999999999999999999999999999999876
Q ss_pred CCC
Q 024366 167 DSE 169 (268)
Q Consensus 167 ~~~ 169 (268)
...
T Consensus 90 ~~~ 92 (99)
T 2cpj_A 90 ASL 92 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 190
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=113.75 Aligned_cols=71 Identities=13% Similarity=0.332 Sum_probs=66.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|||+|||+++|+++|+++|+.| .|..|.| ++|+|||+|.+.++|.+|++ ||+..|. |+.|.|.++.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~--gr~i~v~~a~ 85 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG--GRYIEVFREK 85 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET--TEEEEEEEES
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC--CcEEEEEECC
Confidence 4789999999999999999999999 8999988 36899999999999999999 9999986 9999999988
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 191
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.6e-17 Score=118.22 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+|||+|| |..+++++|+++|++|| .|..+.| .+|||||+|.+.++|++||+.|||..|+|+.|.|.++...
T Consensus 27 ~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4689999999 89999999999999999 8999998 4799999999999999999999999999999999998654
No 192
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=1.1e-16 Score=113.28 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCC---cEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVD---RVI 158 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g---~~i 158 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999 8899999999999999999999983 5799999999999999999999999998 999
Q ss_pred EEEEeecCCCC
Q 024366 159 SVEYALKDDSE 169 (268)
Q Consensus 159 ~v~~a~~~~~~ 169 (268)
.|.|+..+...
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876643
No 193
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=116.91 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCC--CccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g--~~~~g~~i~v~~a~ 164 (268)
...++++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|++.++|++|++.|++ ..|.|+.|.|.|+.
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 4457899999999 889999999999999999999998 479999999999999999999874 68999999999998
Q ss_pred cCCCC
Q 024366 165 KDDSE 169 (268)
Q Consensus 165 ~~~~~ 169 (268)
.+...
T Consensus 106 ~k~~~ 110 (119)
T 2ad9_A 106 HKELK 110 (119)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76644
No 194
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=112.85 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=71.8
Q ss_pred CCCCcEEEEEccCCCCCCHHHHH----HhhccCCCeEEEEEe-----CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~----~~f~~~g~v~~~~i~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
....++|||+|| |..+++++|+ ++|++||.|..|.|. ++||||+|.+.++|++|++.|||..++|+.|.|
T Consensus 6 ~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345689999999 8999999999 999999999999995 889999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
+++.+...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99976543
No 195
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=119.37 Aligned_cols=73 Identities=21% Similarity=0.455 Sum_probs=66.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
++|||+|||+++|+++|+++|.+||+|..|.| ++|||||+|.+.++|.+|++. ++..|. |+.|.|.++.
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~~l~V~~a~ 104 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID--GRVVEPKRAV 104 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET--TEEEEEECCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC--CEEEEEEECC
Confidence 78999999999999999999999999999988 368999999999999999986 887775 9999999998
Q ss_pred cCCC
Q 024366 75 GERG 78 (268)
Q Consensus 75 ~~~~ 78 (268)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6644
No 196
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=118.20 Aligned_cols=74 Identities=14% Similarity=0.317 Sum_probs=67.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccC------CCceE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGY------DRRRL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~------~g~~i 68 (268)
+++|||+|||+++|+++|+++|..||+|..|.| ++|||||+|.+.++|.+|++.|||..|.. .+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 478999999999999999999999999999998 36899999999999999999999998831 37889
Q ss_pred EEEEecc
Q 024366 69 SVEWARG 75 (268)
Q Consensus 69 ~v~~~~~ 75 (268)
.|.|+.+
T Consensus 105 ~v~~a~p 111 (114)
T 1x5o_A 105 LCKFSGP 111 (114)
T ss_dssp EEEECCC
T ss_pred eEEccCC
Confidence 9999874
No 197
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=114.27 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEE-e----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVD-M----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~-i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|.+||+|..|. | ..+.|||+|.+.++|.+|++.|||..|. |+.|.|.++.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE--NFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS--SCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEEEEcCcc
Confidence 47899999999999999999999999999994 6 2345999999999999999999999986 999999999865
No 198
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=113.16 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--e-------CCeEEEEeccHHHHHHHHHhh-CCCccCCcE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R-------RNFAFVQFETQEEATKALEST-DRSKLVDRV 157 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~-------~~~afV~f~~~~~a~~A~~~l-~g~~~~g~~ 157 (268)
....+.++|||+|| |..+++++|+++|+.||.|..|.| . ++||||+|.+.++|++|++.| |+..|.|+.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34556899999999 889999999999999999999998 2 579999999999999999999 999999999
Q ss_pred EEEEEeecCCCC
Q 024366 158 ISVEYALKDDSE 169 (268)
Q Consensus 158 i~v~~a~~~~~~ 169 (268)
|.|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 199
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=114.99 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=64.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|.+||+|..|.| ++|||||+|.+.++|.+|++. +..| +|+.|.|.++
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~l~v~~a 90 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI--DGRWCDCKLP 90 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE--TTEEEEEECC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCee--CCeEEEEEec
Confidence 478999999999999999999999999999988 357999999999999999983 4445 4999999999
Q ss_pred ccCCC
Q 024366 74 RGERG 78 (268)
Q Consensus 74 ~~~~~ 78 (268)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87644
No 200
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=3.7e-17 Score=117.64 Aligned_cols=74 Identities=27% Similarity=0.495 Sum_probs=69.0
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
..+|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++||+.|||..|+|+.|.|.++..+
T Consensus 5 ~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 568999999 889999999999999999999988 4689999999999999999999999999999999999765
Q ss_pred C
Q 024366 167 D 167 (268)
Q Consensus 167 ~ 167 (268)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 201
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.2e-17 Score=116.57 Aligned_cols=80 Identities=30% Similarity=0.559 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
....+.++|||+|| |..+++++|+++|++||.|..|.+.+|||||+|.+.++|++|++.|||..++|+.|.|.|+....
T Consensus 26 ~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 26 EGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp --CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 34556889999999 88999999999999999999999999999999999999999999999999999999999997754
Q ss_pred C
Q 024366 168 S 168 (268)
Q Consensus 168 ~ 168 (268)
.
T Consensus 105 ~ 105 (108)
T 2jvo_A 105 K 105 (108)
T ss_dssp -
T ss_pred C
Confidence 3
No 202
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=113.30 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=70.2
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCC-eEEEEE-eCCeEEEEeccHHHHHHHHHhhCC-CccCCcEEEEEEeecC
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI-RRNFAFVQFETQEEATKALESTDR-SKLVDRVISVEYALKD 166 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~-v~~~~i-~~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~i~v~~a~~~ 166 (268)
..+.++|||+|| |..+++++|+++|++||. |..+.+ .++||||+|.+.++|++|++.||| ..++|+.|.|.|+.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 346789999999 889999999999999999 665555 899999999999999999999999 9999999999999865
Q ss_pred CC
Q 024366 167 DS 168 (268)
Q Consensus 167 ~~ 168 (268)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 203
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=112.35 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=72.0
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..++|+.|.|.
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999 8899999999999999999999982 4799999999999999999999999999999999
Q ss_pred EeecCCC
Q 024366 162 YALKDDS 168 (268)
Q Consensus 162 ~a~~~~~ 168 (268)
|+.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987653
No 204
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=8.8e-17 Score=109.92 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.1
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..++|||+|| |..+++++|+++|++||.|..+.+ .+++|||+|.+.++|++|++.|||..++|+.|.|++
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 889999999999999999999988 678999999999999999999999999999999999
Q ss_pred eecCC
Q 024366 163 ALKDD 167 (268)
Q Consensus 163 a~~~~ 167 (268)
+.++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 205
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=7.6e-17 Score=109.53 Aligned_cols=74 Identities=30% Similarity=0.579 Sum_probs=69.3
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
..+.++|||.|| |..+++++|+++|++||.|..+.+ .+++|||+|.+.++|++|++.|||..++|+.|.|+
T Consensus 4 ~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346889999999 889999999999999999999988 57899999999999999999999999999999999
Q ss_pred Eee
Q 024366 162 YAL 164 (268)
Q Consensus 162 ~a~ 164 (268)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 984
No 206
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=6.7e-17 Score=116.33 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.||+..|+|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456789999999 889999999999999999999988 2369999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999876543
No 207
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.1e-17 Score=119.73 Aligned_cols=72 Identities=29% Similarity=0.600 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|+ .|+|..|. |+.|.|.++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR--GRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEEEC
Confidence 368999999999999999999999999999988 2689999999999999999 79999986 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 208
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=113.26 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=65.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeC--C-EEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKS--G-FAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~--g-~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|||+++|+++|+++|.+||+|..|.+.+ + ||||+|.+.++|.+|++ |++..|. |+.|.|.++....
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~--g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG--GHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET--TEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC--CEEEEEEECCcCC
Confidence 46999999999999999999999999999985522 2 99999999999999999 9999986 9999999876543
No 209
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=115.86 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=66.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+.+|+++|+++|++||.|..+.. ++|||||+|.+.++|.+|++.|++..|. |+.|.|.++...
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a~~~ 91 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYYTGEK 91 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET--TEEEEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEcCCC
Confidence 479999999999999999999999999987733 5799999999999999999999998886 999999998754
No 210
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=123.47 Aligned_cols=73 Identities=21% Similarity=0.435 Sum_probs=66.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEe--------eCCEEEEEEcCHHHHHHHHHhcCCC----CccCCCce
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER--VDM--------KSGFAFVYFEDDRDAADAIRGLDNI----PFGYDRRR 67 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--i~i--------~~g~afV~f~~~~~a~~a~~~l~~~----~~~~~g~~ 67 (268)
+++|||+|||+++|+++|+++|++||+|.. |+| ++|||||+|.+. +|.+|++.||+. .|. |+.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--gr~ 99 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--GKT 99 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--GCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--CEE
Confidence 579999999999999999999999999966 777 479999999999 999999999998 665 999
Q ss_pred EEEEEeccCC
Q 024366 68 LSVEWARGER 77 (268)
Q Consensus 68 i~v~~~~~~~ 77 (268)
|.|.++....
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 211
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=122.12 Aligned_cols=70 Identities=33% Similarity=0.528 Sum_probs=65.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.||+..|. |+.|.|.++
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~A 140 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRVNLA 140 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--TEEEEEEC-
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEEeC
Confidence 479999999999999999999999999999998 4789999999999999999999999886 999999875
No 212
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-16 Score=113.30 Aligned_cols=80 Identities=19% Similarity=0.383 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+.++|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++||+.|++ .|.|+.|.
T Consensus 12 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556899999999 889999999999999999999999 357999999999999999999998 89999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765443
No 213
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=110.62 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=67.5
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
.+..+|||+|| |..+++++|+++|+.||.|..+.+ .++||||+|.+.++|++|++.|||..++|+.|.|.|
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45789999999 889999999999999999999998 246999999999999999999999999999999999
Q ss_pred eecC
Q 024366 163 ALKD 166 (268)
Q Consensus 163 a~~~ 166 (268)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 214
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.6e-17 Score=125.47 Aligned_cols=73 Identities=21% Similarity=0.514 Sum_probs=68.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+.+|+++|+++|++||+|+.|.| ++|||||+|.+.++|.+|++.|++..|. |+.|.|+++.
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~V~~a~ 165 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMDIQLVA 165 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEEec
Confidence 479999999999999999999999999999998 3699999999999999999999999886 9999999997
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-16 Score=112.72 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhC------CCccC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTD------RSKLV 154 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~------g~~~~ 154 (268)
...+.++|||.|| |..+++++|+++|..||.|..|.| .++||||+|.+.++|++|++.|| +..|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4456889999999 889999999999999999999998 36899999999999999999999 99999
Q ss_pred CcEEEEEEeecCCCC
Q 024366 155 DRVISVEYALKDDSE 169 (268)
Q Consensus 155 g~~i~v~~a~~~~~~ 169 (268)
|+.|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 216
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=114.99 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=65.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||+++|+++|+++|+.|+.|.-+.. ++|||||+|.+.++|++|++.||+..|. |+.|.|.++..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~a~~~ 92 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID--GNKVTLDWAKPK 92 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECEEEECCCC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEEEEEecCC
Confidence 579999999999999999999999875554433 3689999999999999999999999886 999999999865
Q ss_pred CC
Q 024366 77 RG 78 (268)
Q Consensus 77 ~~ 78 (268)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 217
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-18 Score=118.52 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=64.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+++|+++|+++|++||+|..+.+ ++|||||+|.+.++|.+|++ ||+..|. |+.|.|.++.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V~~a~ 93 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKLEKPK 93 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEEEEcC
Confidence 468999999999999999999999998765222 58999999999999999998 9999986 9999999987
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
.+
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 218
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=4.1e-17 Score=111.40 Aligned_cols=68 Identities=24% Similarity=0.516 Sum_probs=63.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKY----G-------RIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~----G-------~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i 68 (268)
+++|||+|||+++|+++|+++|++| | +|.++.+ .+|||||+|.+.++|.+|+ .||+..+. |+.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~--g~~l 82 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ--GQSL 82 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET--TEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC--CeEE
Confidence 5799999999999999999999999 8 9999998 5899999999999999999 99999986 9999
Q ss_pred EEEE
Q 024366 69 SVEW 72 (268)
Q Consensus 69 ~v~~ 72 (268)
.|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 219
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=9.5e-17 Score=111.69 Aligned_cols=75 Identities=20% Similarity=0.472 Sum_probs=70.2
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
|+++|||+|| |..+++++|+++|+.||.|..+.| .+|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4689999999 889999999999999999999998 2689999999999999999999999999999999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
.++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8764
No 220
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=115.38 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=63.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|||+|||+++|+++|+++|++||.| .|.| ++|||||+|.++++|++||+ +|+..|. ++.|.|.++.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~i~V~~~~ 90 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ--HRYVELFLNS 90 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS--SSCCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEEEEECC
Confidence 4799999999999999999999999955 8877 47899999999999999995 7988886 9999999887
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 221
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=7.7e-17 Score=111.20 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=71.9
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..+.++|||.|| |..+++++|+++|++||.|..+.| .++||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346789999999 889999999999999999999988 3589999999999999999999999999999999999
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 222
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=118.82 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=66.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRI-ERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v-~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||.| ..|.| ++|||||+|.+.++|.+||+. ++..|. |+.|.|.++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~--gr~i~v~~a 91 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN--GREAFVHVV 91 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET--TEEEEEEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC--CeEEEEEEC
Confidence 4789999999999999999999999999 77887 589999999999999999986 888776 999999998
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
..+.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7553
No 223
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=114.19 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=67.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE--------eCCeEEEEeccHHHHHHHHHhh-CCCccCCcEEEEEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI--------RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEY 162 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~ 162 (268)
+++|||.|| |..+++++|+++|++|| .|..|.| .+|||||+|.+.++|++|++.| ++..++|+.|.|+|
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 478999999 89999999999999999 7998887 4689999999999999999987 46789999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
+.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 224
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=111.85 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=71.0
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-----------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.+.++|||.|| |..+++++|+++|+.||.|..|.|. ++||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 8899999999999999999998882 36999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 225
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=113.86 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=72.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhcc-CCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCc-cCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK-LVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~-~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~-~~g~~i~ 159 (268)
...+..+|||+|| |..+++++|+++|+. ||.|..|.| .++||||+|.+.++|++|++.||+.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999 889999999999999 999999998 36799999999999999999999999 9999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999766543
No 226
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=110.00 Aligned_cols=75 Identities=28% Similarity=0.513 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|++||.|..+.+ .++||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456789999999 889999999999999999999999 3579999999999999999999999999999999
Q ss_pred EEee
Q 024366 161 EYAL 164 (268)
Q Consensus 161 ~~a~ 164 (268)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 227
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=113.91 Aligned_cols=80 Identities=18% Similarity=0.444 Sum_probs=73.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|.|+.|.|.|+...
T Consensus 21 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 3456789999999 889999999999999999999999 4799999999999999999999999999999999999876
Q ss_pred CCC
Q 024366 167 DSE 169 (268)
Q Consensus 167 ~~~ 169 (268)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 228
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=113.12 Aligned_cols=78 Identities=26% Similarity=0.483 Sum_probs=71.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.|. +|||||+|.+.++|++|++.|||..++|+.|.|
T Consensus 19 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3456789999999 8899999999999999999999982 579999999999999999999999999999999
Q ss_pred EEeecCC
Q 024366 161 EYALKDD 167 (268)
Q Consensus 161 ~~a~~~~ 167 (268)
.|+.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998765
No 229
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=1.4e-16 Score=113.64 Aligned_cols=79 Identities=22% Similarity=0.465 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|+..|||..|+|+.|.|
T Consensus 22 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456789999999 889999999999999999999998 2689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
.|+.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987653
No 230
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.5e-16 Score=111.77 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+.++|||.|| |..+++++|+++|..||.|..|.|. ++||||+|.+.++|++|++.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4456889999999 8899999999999999999999882 5799999999999999999999999999999999
Q ss_pred EeecCC
Q 024366 162 YALKDD 167 (268)
Q Consensus 162 ~a~~~~ 167 (268)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987544
No 231
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=110.98 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=70.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...+..+|||.|| |..+++++|+++|+.|| |..|.|. ++||||+|.+.++|++|| .||+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456789999999 89999999999999999 9999982 579999999999999999 9999999999999
Q ss_pred EEEeecCCCC
Q 024366 160 VEYALKDDSE 169 (268)
Q Consensus 160 v~~a~~~~~~ 169 (268)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 232
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2e-17 Score=109.63 Aligned_cols=67 Identities=21% Similarity=0.540 Sum_probs=61.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
||||+|||+++|+++|+++|++||+|..|.+ ++|||||+|.+.++|.+|++ +++..+. |+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~--g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG--LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT--TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC--CEEEEEEEC
Confidence 6999999999999999999999999999988 36899999999999999997 4777775 999998874
No 233
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-17 Score=111.31 Aligned_cols=73 Identities=29% Similarity=0.391 Sum_probs=63.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERG 78 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~ 78 (268)
+++|||+|||+++|+++|+++|++||+|..|.| ++|||||+|.+.++|++ +++..+.+.+..|.|.++..+..
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCCCC
Confidence 689999999999999999999999999999999 48999999999999975 45556656799999999876543
No 234
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=108.39 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhh-CCCccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l-~g~~~~g~~i~v~~a~ 164 (268)
...+..+|||+|| |..+++++|+++|++||.|..+.+ .+++|||+|.+.++|++|++.| ++..++|+.|.|+|++
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999 889999999999999999999999 5699999999999999999999 9999999999999974
No 235
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.3e-16 Score=107.93 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=68.5
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
+.+|||+|| |..+++++|+++|+.||.|..+.+. +++|||+|.+.++|++|++.|||..++|+.|.|.|+.
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 358999999 8899999999999999999999882 6799999999999999999999999999999999997
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 236
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=4.1e-17 Score=131.45 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=66.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYG--RIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G--~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
++|||+|||+++|+++|+++|++|| +|..|.| ++|||||+|.+.++|.+||+.||+..|. |+.|.|.+
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~--Gr~l~V~~ 146 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVVTP 146 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT--TBCCEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC--CEEeEEEE
Confidence 6899999999999999999999999 9999988 4689999999999999999999999986 99999999
Q ss_pred ec
Q 024366 73 AR 74 (268)
Q Consensus 73 ~~ 74 (268)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 237
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=1.7e-16 Score=112.44 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCcc---CCcE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKL---VDRV 157 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~---~g~~ 157 (268)
...+..+|||+|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.||+..+ .|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4456789999999 889999999999999999999998 357999999999999999999999988 8999
Q ss_pred EEEEEeecCCC
Q 024366 158 ISVEYALKDDS 168 (268)
Q Consensus 158 i~v~~a~~~~~ 168 (268)
|.|.++..+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 238
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=2.1e-17 Score=119.52 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=65.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR---IERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~---v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
.++|||+|||+++|+++|+++|+.||. |..|.| ++|||||+|.+.++|++|++ |++..|. |+.|.|.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~i~V~ 93 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--HRYIEVF 93 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET--TEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC--CeEEEEE
Confidence 468999999999999999999999999 888887 47899999999999999998 9998886 9999999
Q ss_pred EeccC
Q 024366 72 WARGE 76 (268)
Q Consensus 72 ~~~~~ 76 (268)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 239
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=112.24 Aligned_cols=75 Identities=25% Similarity=0.436 Sum_probs=66.8
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCC--eEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCc----cCC
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRI--------RRNFAFVQFETQEEATKALESTDRSK----LVD 155 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~--v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~----~~g 155 (268)
....++|||.|| |..+++++|+++|++||. |..|.+ .+|||||+|.+.++|++|++.|||.. |+|
T Consensus 6 ~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 6 HHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 345789999999 889999999999999995 567776 46899999999999999999999974 899
Q ss_pred cEEEEEEeec
Q 024366 156 RVISVEYALK 165 (268)
Q Consensus 156 ~~i~v~~a~~ 165 (268)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 240
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=8.3e-17 Score=116.72 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=66.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++|||+|| ++|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.|++..|. |+.|.|.++....
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE--SVQLKVNIARKQP 112 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCS--SCBCEEEECCSSC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEEeCCCC
Confidence 579999996 6999999999999999999998 5899999999999999999999999886 9999999998653
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.5e-16 Score=110.26 Aligned_cols=77 Identities=29% Similarity=0.458 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.|| |..|.| .+|||||+|.+.++|++|+ .|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4456789999999 89999999999999997 999888 2569999999999999999 89999999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987554
No 242
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=110.68 Aligned_cols=77 Identities=36% Similarity=0.515 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+.++|||.|| |..+++++|+++|+.||.|..|.+ .+++|||+|.+.++|++|++.|||..++|+.|.
T Consensus 10 ~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566889999999 889999999999999999999988 246999999999999999999999999999999
Q ss_pred EEEeec
Q 024366 160 VEYALK 165 (268)
Q Consensus 160 v~~a~~ 165 (268)
|.|+..
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 243
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=113.26 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCe----EEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v----~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|+.||.| ..+.+ .++||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4456899999999 8899999999999999998 55555 4789999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.|+..+...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 244
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-17 Score=120.67 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=64.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER-VDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~-i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||+++|+++|+++|..||+|.. +.| ++|||||+|.+.++|.+||+ ||+..|. |+.|.|.++
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~i~V~~a 101 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG--NRFIQVHPI 101 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST--TSCBEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEEEEEC
Confidence 368999999999999999999999999876 333 47999999999999999998 9999886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 743
No 245
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=113.10 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=71.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHH---HhhccCCCeEEEEEe-----------CCeEEEEeccHHHHHHHHHhhCCCccC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIK---RHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLV 154 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~---~~f~~~g~v~~~~i~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~ 154 (268)
.....++|||+|| |..+++++|+ ++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|+
T Consensus 11 r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3455789999999 8899999999 999999999999982 159999999999999999999999999
Q ss_pred CcEEEEEEeecCC
Q 024366 155 DRVISVEYALKDD 167 (268)
Q Consensus 155 g~~i~v~~a~~~~ 167 (268)
|+.|.|.|+.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 246
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=109.56 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
.....++|||+|| |..+++++|+++|+.||.|. +.+ .++||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 15 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4455789999999 89999999999999999986 444 58999999999999999999999999999999999997
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 247
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=7.8e-17 Score=129.38 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=68.2
Q ss_pred CccEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccC-------
Q 024366 2 SRPIFVGNFEYET---------RQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGY------- 63 (268)
Q Consensus 2 s~tl~V~nLp~~~---------t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~------- 63 (268)
++||||+||+..+ |+++|+++|++||+|.+|.| .+|||||+|.+.++|+.|+++|+|..|.+
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~ 213 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWD 213 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGG
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccccc
Confidence 5899999999998 79999999999999999998 78999999999999999999999999832
Q ss_pred ---CCceEEEEEeccCC
Q 024366 64 ---DRRRLSVEWARGER 77 (268)
Q Consensus 64 ---~g~~i~v~~~~~~~ 77 (268)
.|+.|.|.|+....
T Consensus 214 ~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 214 DRREGTGLLVKWANEDP 230 (240)
T ss_dssp GGGGSCCCEEEECC---
T ss_pred ccCCCCEEEEEEccCCC
Confidence 48999999998653
No 248
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=112.64 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeE--------EEEE--------eCCeEEEEeccHHHHHHHHHhhCCCc
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRI--------RRNFAFVQFETQEEATKALESTDRSK 152 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~--------~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~ 152 (268)
...+.++|||.|| |..+++++|+++|+.||.|. .|.| .++||||+|.+.++|++||+.|||..
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4456889999999 89999999999999999998 5777 36799999999999999999999999
Q ss_pred cCCcEEEEEEeecCCC
Q 024366 153 LVDRVISVEYALKDDS 168 (268)
Q Consensus 153 ~~g~~i~v~~a~~~~~ 168 (268)
|.|+.|.|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 249
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=122.56 Aligned_cols=74 Identities=22% Similarity=0.442 Sum_probs=66.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEe-----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER--------VDM-----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRL 68 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i 68 (268)
+++|||+|||+.+|+++|+++|..||.|.. |.+ ++|||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l 122 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF--GKPM 122 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET--TEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC--CcEE
Confidence 578999999999999999999999999865 433 4789999999999999999999999986 9999
Q ss_pred EEEEeccCC
Q 024366 69 SVEWARGER 77 (268)
Q Consensus 69 ~v~~~~~~~ 77 (268)
.|.++....
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997653
No 250
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=3.6e-17 Score=120.73 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=64.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR---IERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~---v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
.++|||+|||+++|+++|+++|++||+ |..|.| ++|||||+|.+.++|++|++ |++..|. |+.|.|.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--gr~i~V~ 120 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--HRYIEVF 120 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS--SSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC--CEEEEEE
Confidence 368999999999999999999999999 788877 46899999999999999998 9998886 9999999
Q ss_pred Eecc
Q 024366 72 WARG 75 (268)
Q Consensus 72 ~~~~ 75 (268)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8763
No 251
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.9e-16 Score=107.49 Aligned_cols=77 Identities=26% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+.++|||+|| .+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||..|.|+.|.|.|+.++
T Consensus 11 ~~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456789999997 6899999999999999999998 5899999999999999999999999999999999999776
Q ss_pred CC
Q 024366 167 DS 168 (268)
Q Consensus 167 ~~ 168 (268)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 252
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=115.14 Aligned_cols=78 Identities=14% Similarity=0.307 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHH----HhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~----~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...+.++|||+|| +..+++++|+ ++|++||.|..|.+ .+|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456889999999 7899998876 69999999999988 468999999999999999999999999999999
Q ss_pred EEEeecCC
Q 024366 160 VEYALKDD 167 (268)
Q Consensus 160 v~~a~~~~ 167 (268)
|.|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997654
No 253
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=111.03 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+..+|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 21 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999 889999999999999999999988 357999999999999999999999999999999
Q ss_pred EEEeecCC
Q 024366 160 VEYALKDD 167 (268)
Q Consensus 160 v~~a~~~~ 167 (268)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99997653
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=113.52 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=63.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
.+|||+|||+++|+++|+++|+.| .|..|.| ++|||||+|.+.++|.+|+ .|++..|. |+.|.|..+..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V~~a~~ 92 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI--QRYVEVSPATE 92 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET--TEEEEEEECCH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEEEECCc
Confidence 589999999999999999999999 8999988 4799999999999999999 59998886 99999988764
Q ss_pred C
Q 024366 76 E 76 (268)
Q Consensus 76 ~ 76 (268)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 255
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=2.6e-16 Score=109.60 Aligned_cols=78 Identities=28% Similarity=0.536 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHH----HhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~----~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...++++|||+|| |..+++++|+ ++|++||.|..|.+ .+|||||+|.+.++|++|++.|||..++|+.|.
T Consensus 4 ~~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 4 ETRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp --CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 3457899999999 8899999999 99999999999998 479999999999999999999999999999999
Q ss_pred EEEeecCC
Q 024366 160 VEYALKDD 167 (268)
Q Consensus 160 v~~a~~~~ 167 (268)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998654
No 256
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=112.80 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
..++|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||..|.|+.|.|+|+....
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 3679999999 889999999999999999999998 67899999999999999999999999999999999997643
No 257
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=109.44 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
...+.++|||.|| |..+++++|+++|++||.|.-+.. .++||||+|.+.++|++|++.||+..|.|+.|.|.|+.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4456899999999 889999999999999998833222 57899999999999999999999999999999999998
Q ss_pred cCCC
Q 024366 165 KDDS 168 (268)
Q Consensus 165 ~~~~ 168 (268)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 258
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=111.46 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=68.8
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
++|||+|| |..+++++|+++|++||.|..|.+ .++||||+|.+.++|++|++.|||..++|+.|.|.++.+..
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999 889999999999999999999999 47899999999999999999999999999999999998765
No 259
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=109.60 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--------EEE--------eCCeEEEEeccHHHHHHHHHhhCCC
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--------~~i--------~~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
....+.++|||+|| |..+++++|+++|+.||.|.. +.+ .+|||||+|.+.++|++|++.|||.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35567899999999 889999999999999999998 777 2569999999999999999999999
Q ss_pred ccCCcEEEEEEee
Q 024366 152 KLVDRVISVEYAL 164 (268)
Q Consensus 152 ~~~g~~i~v~~a~ 164 (268)
.+.|+.|.|++|.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 260
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=1.9e-16 Score=116.12 Aligned_cols=79 Identities=35% Similarity=0.576 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+.++|||.|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++||+.|||..|+|+.|.
T Consensus 41 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567889999999 889999999999999999999998 357999999999999999999999999999999
Q ss_pred EEEeecCC
Q 024366 160 VEYALKDD 167 (268)
Q Consensus 160 v~~a~~~~ 167 (268)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997754
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=112.24 Aligned_cols=77 Identities=34% Similarity=0.564 Sum_probs=71.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
...+.++|||+|| +..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456789999999 8899999999999999999999993 78999999999999999999999999999999999
Q ss_pred eecC
Q 024366 163 ALKD 166 (268)
Q Consensus 163 a~~~ 166 (268)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 262
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=3.1e-16 Score=111.27 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+..+|||.|| |..+++++|+++|+.||.|..|.|. +++|||+|.+.++|++|++.|||..|.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4466899999999 8899999999999999999999883 6799999999999999999999999999999999
Q ss_pred Eee
Q 024366 162 YAL 164 (268)
Q Consensus 162 ~a~ 164 (268)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 263
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=109.04 Aligned_cols=80 Identities=26% Similarity=0.434 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
....+.++|||.|| |..+++++|+++|+.|+.|..+.. .++||||+|.+.++|++||+.||+..|.|+.|.|.|
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 10 ARSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567899999999 889999999999998865544433 357999999999999999999999999999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987654
No 264
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=115.75 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=65.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGR---IERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVE 71 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~---v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~ 71 (268)
.++|||+|||+++|+++|+++|..||. |..|.| ++|||||+|.+.++|.+|++ +++..|. |+.|.|.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~i~V~ 87 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG--QRYVEVY 87 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS--SSCCCCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC--CeEEEEE
Confidence 368999999999999999999999998 888888 47899999999999999998 9998886 9999999
Q ss_pred EeccC
Q 024366 72 WARGE 76 (268)
Q Consensus 72 ~~~~~ 76 (268)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 87643
No 265
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=111.88 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=69.9
Q ss_pred CCCCCcEEEE--EccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCcc-----CCcEEE
Q 024366 89 NQRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL-----VDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v--~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~-----~g~~i~ 159 (268)
...|+.+||| +|| +..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||.++ .|..|.
T Consensus 21 ~~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3456889999 669 889999999999999999999988 478999999999999999999999988 688999
Q ss_pred EEEeecCC
Q 024366 160 VEYALKDD 167 (268)
Q Consensus 160 v~~a~~~~ 167 (268)
|.|+....
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99997554
No 266
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=109.75 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=69.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+..+|||.|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++|++.|||..++|+.|.|.
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456789999999 8899999999999999999999982 5799999999999999999999999999999999
Q ss_pred Eeec
Q 024366 162 YALK 165 (268)
Q Consensus 162 ~a~~ 165 (268)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 267
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=1.5e-16 Score=111.47 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=69.0
Q ss_pred CCcEEEEEccCCC------CCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCC-c
Q 024366 92 PTKTLFVINFDPI------RTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD-R 156 (268)
Q Consensus 92 ~~~~l~v~~l~~~------~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g-~ 156 (268)
..++|||+|| |. .+++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..+.| +
T Consensus 5 ~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4689999999 88 8999999999999999999988 56899999999999999999999999999 9
Q ss_pred EEEEEEeecC
Q 024366 157 VISVEYALKD 166 (268)
Q Consensus 157 ~i~v~~a~~~ 166 (268)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 268
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-18 Score=121.97 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=68.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIER--------VDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDR 65 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~--------i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g 65 (268)
+++|||+|||.++|+++|+++|++||+|.. |.| ++|||||+|.+.++|.+|++.||+..|. |
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g 84 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS--G 84 (116)
Confidence 479999999999999999999999999988 666 3689999999999999999999999886 9
Q ss_pred ceEEEEEeccCCCc
Q 024366 66 RRLSVEWARGERGR 79 (268)
Q Consensus 66 ~~i~v~~~~~~~~~ 79 (268)
+.|.|.++..+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876443
No 269
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-16 Score=111.65 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=69.6
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
...++|||+|| +..+++++|+++|+.||.|..+.+ .++||||+|.+.++|.+|+..|||..++|+.|.|.|+++
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 44689999999 889999999999999999999998 689999999999999999999999999999999999865
No 270
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=5.9e-16 Score=111.86 Aligned_cols=76 Identities=21% Similarity=0.469 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+.++|||+|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 35 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999 889999999999999999999998 267999999999999999999999999999999
Q ss_pred EEEee
Q 024366 160 VEYAL 164 (268)
Q Consensus 160 v~~a~ 164 (268)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 271
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=110.45 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=70.0
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeE-EEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcE---
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRV--- 157 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~-~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 157 (268)
..+.++|||+|| |..+++++|+++|++||.|. .+.| .++||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 446899999999 88999999999999999999 8888 2379999999999999999999999999999
Q ss_pred -EEEEEeecCC
Q 024366 158 -ISVEYALKDD 167 (268)
Q Consensus 158 -i~v~~a~~~~ 167 (268)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 272
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=7.9e-17 Score=119.25 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=64.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
.++|||+|||+++|+++|+++|++|| |..|.| ++|||||+|.+.++|++|| .+|+..|. ++.|.|.++.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i~V~~a~ 121 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYIELFLNS 121 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCCCCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEEEEEECC
Confidence 46899999999999999999999999 668888 4799999999999999999 78998886 9999999887
Q ss_pred cC
Q 024366 75 GE 76 (268)
Q Consensus 75 ~~ 76 (268)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 273
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=104.50 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=67.4
Q ss_pred CCCCcE-EEEEccCCCCCCHHH----HHHhhccCC-CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 90 QRPTKT-LFVINFDPIRTRERD----IKRHFEPYG-NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 90 ~~~~~~-l~v~~l~~~~~~~~~----l~~~f~~~g-~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
.+|+.+ |||.|| |..+++++ |+++|++|| .|.+|. .|+|||+|.+.++|+.|++.|||..+.|+.|.|+||
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 345666 899999 89999887 558999995 999983 499999999999999999999999999999999999
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
+....
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87653
No 274
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.3e-16 Score=112.22 Aligned_cols=72 Identities=25% Similarity=0.581 Sum_probs=65.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++ ++..+. |+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~--g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH--GKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET--TEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC--CEEEEEEECC
Confidence 579999999999999999999999999999998 46999999999999999997 777775 9999999987
Q ss_pred cCC
Q 024366 75 GER 77 (268)
Q Consensus 75 ~~~ 77 (268)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 553
No 275
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=109.44 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
.....++|||.|| |..+++++|+++|..||.|..+.+ .++||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445789999999 899999999999999999875443 3689999999999999999999999999999999
Q ss_pred EEeecCC
Q 024366 161 EYALKDD 167 (268)
Q Consensus 161 ~~a~~~~ 167 (268)
+++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987543
No 276
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2.3e-15 Score=108.81 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=67.3
Q ss_pred CCCcE--EEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCe-EEEEeccHHHHHHHHHhhCCCccCC--cEEEEEEe
Q 024366 91 RPTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYA 163 (268)
Q Consensus 91 ~~~~~--l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~-afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~a 163 (268)
+++++ |||+|| ++.+++++|+++|++||.|..|.| ..|+ |||+|.+.++|..|++.|||..|.| ..|.|+||
T Consensus 21 ~ps~vl~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34544 579999 899999999999999999999988 3486 9999999999999999999999987 69999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 277
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=110.37 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+.++|||+|| +..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|++.|||..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999 889999999999999999999998 46899999999999999999999999999999999
Q ss_pred EeecCCC
Q 024366 162 YALKDDS 168 (268)
Q Consensus 162 ~a~~~~~ 168 (268)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9987654
No 278
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=9.2e-16 Score=110.31 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
..++++|||+|| |..+++++|+++|+.||.|..|.+ .+|||||+|.+.++|.+|++.|||..++|+.|.|.|+.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 346789999999 889999999999999999999998 46899999999999999999999999999999999997
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 279
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=9.4e-17 Score=110.33 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=62.8
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCC--CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g--~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
.+|||+|| +..+++++|+++|+.|| .|..+.+ .+|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 89999999999999999 9998887 3569999999999999999999999999999999999
Q ss_pred ecCCC
Q 024366 164 LKDDS 168 (268)
Q Consensus 164 ~~~~~ 168 (268)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87654
No 280
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=7.3e-16 Score=111.71 Aligned_cols=77 Identities=26% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+.++|||+|| .+++++|+++|+.||.|..|.+ .++||||+|.+.++|++|++.|||..++|+.|.|.|+.+.
T Consensus 35 ~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 4456889999997 4899999999999999999998 5899999999999999999999999999999999999876
Q ss_pred CC
Q 024366 167 DS 168 (268)
Q Consensus 167 ~~ 168 (268)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 281
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=111.90 Aligned_cols=76 Identities=21% Similarity=0.445 Sum_probs=69.5
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
.+.++|||.|| |..+++++|+++|..||.|..|.| .+|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34689999999 889999999999999999999988 357999999999999999998 99999999999999
Q ss_pred eecCCC
Q 024366 163 ALKDDS 168 (268)
Q Consensus 163 a~~~~~ 168 (268)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987654
No 282
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=4e-16 Score=124.53 Aligned_cols=72 Identities=25% Similarity=0.452 Sum_probs=67.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
++|||+|||+.+|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |++|.|.++..+
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~--g~~i~V~~a~~~ 181 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGRFKSR 181 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECCCH
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEEEEEcCCC
Confidence 58999999999999999999999999999988 5799999999999999999999999986 999999998754
No 283
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=108.84 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=67.8
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
.+..+|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 45689999999 889999999999999999999999 46899999999999999999 8999999999999997
Q ss_pred ec
Q 024366 164 LK 165 (268)
Q Consensus 164 ~~ 165 (268)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 284
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=110.86 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|+.||.|..|.| .++||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4556899999999 889999999999999999999988 236999999999999999998 999999999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 285
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=115.42 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=62.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRI----ERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v----~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
..+|||+|||+++|+++|+++|++||+| ..|.| ++|||||+|.+.++|++|++. ++..|. ++.|.|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~i~V 99 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRYIEL 99 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeEEEE
Confidence 3689999999999999999999999986 57776 479999999999999999985 887775 899999
Q ss_pred EEecc
Q 024366 71 EWARG 75 (268)
Q Consensus 71 ~~~~~ 75 (268)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 286
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.1e-15 Score=111.11 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=67.4
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCe-EEEEeccHHHHHHHHHhhCCCccCC--cEEEEEEeecC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYALKD 166 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~-afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~a~~~ 166 (268)
.-.|||+|| ++.+++++|+++|++||.|..|.+ .+++ |||+|.+.++|++|++.|||..|.| ..|.|+|++..
T Consensus 28 VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 346779999 899999999999999999999988 4567 9999999999999999999999998 89999999866
Q ss_pred C
Q 024366 167 D 167 (268)
Q Consensus 167 ~ 167 (268)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 287
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=104.13 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=68.7
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
.....+|||.|| |..+++++|+++|+.| .|..|.| .+|+|||+|.+.++|++|++ |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 445789999999 8999999999999999 8999888 35699999999999999999 999999999999999
Q ss_pred eecCC
Q 024366 163 ALKDD 167 (268)
Q Consensus 163 a~~~~ 167 (268)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97764
No 288
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8.6e-16 Score=105.20 Aligned_cols=72 Identities=25% Similarity=0.445 Sum_probs=67.1
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
.++|||+|| |..+++++|+++|+.||.|..+.+ .+++|||+|.+.++|++|+ .|||..+.|+.|.|.++.
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 579999999 889999999999999999999988 2679999999999999999 899999999999999987
Q ss_pred cC
Q 024366 165 KD 166 (268)
Q Consensus 165 ~~ 166 (268)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 289
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=107.06 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=70.7
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCC-eEEEEEe---------CCeEEEEeccHHHHHHHHHhhC--CCccCCcE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRIR---------RNFAFVQFETQEEATKALESTD--RSKLVDRV 157 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~-v~~~~i~---------~~~afV~f~~~~~a~~A~~~l~--g~~~~g~~ 157 (268)
..+.++|||+|| |..+++++|+++|..||. |..+.+. +|||||+|.+.++|++|++.|+ +..++|+.
T Consensus 5 s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 345789999999 889999999999999998 9999884 6799999999999999999996 58999999
Q ss_pred EEEEEeecCCC
Q 024366 158 ISVEYALKDDS 168 (268)
Q Consensus 158 i~v~~a~~~~~ 168 (268)
|.|.|+.++..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 290
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=108.22 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCCCcEEEEEccCCCCC------CHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCc-
Q 024366 90 QRPTKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR- 156 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~------~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~- 156 (268)
....++|||+|| |..+ ++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 12 DGIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CSCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 344789999999 7788 789999999999999999984 68999999999999999999999999998
Q ss_pred EEEEEEeecC
Q 024366 157 VISVEYALKD 166 (268)
Q Consensus 157 ~i~v~~a~~~ 166 (268)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 291
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-16 Score=106.59 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=70.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
...+..+|||+|| |..+++++|+++|+.||.|..+.. .+|||||+|.+.++|++|++.|||..++|+.|.|.++.+
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4456789999999 889999999999999999877733 578999999999999999999999999999999999976
Q ss_pred CC
Q 024366 166 DD 167 (268)
Q Consensus 166 ~~ 167 (268)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 292
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5.3e-16 Score=112.67 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=61.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCee--EEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIE--RVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~--~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.++|||+|||+++|+++|+++|++| .|. .|.| ++|||||+|.++++|++|++ +++..|. |+.|.|.+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~--gR~I~V~~ 117 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG--HRYIEVFK 117 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT--TBCCCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC--CEEEEEEE
Confidence 4689999999999999999999999 566 8887 47999999999999999997 4777665 99999988
Q ss_pred ecc
Q 024366 73 ARG 75 (268)
Q Consensus 73 ~~~ 75 (268)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 764
No 293
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=106.22 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=67.0
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+..+|||.|| |..+++++|+++|+.||.| .|.| .+|||||+|.+.++|++||+ +|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999 8999999999999999955 7777 46799999999999999995 79999999999999
Q ss_pred EeecCC
Q 024366 162 YALKDD 167 (268)
Q Consensus 162 ~a~~~~ 167 (268)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 294
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.5e-16 Score=111.74 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCccEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcC----HHH----HHHHHH--hcCC
Q 024366 1 MSRPIFVGNF----EYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFED----DRD----AADAIR--GLDN 58 (268)
Q Consensus 1 ~s~tl~V~nL----p~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~----~~~----a~~a~~--~l~~ 58 (268)
|.++|||+|| |+.+++++|+++|+.||+|.+|.+ ++|||||+|.+ +++ |.+|+. .|+|
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 7899999999 999999999999999999999988 68999999996 433 788887 6788
Q ss_pred CCccCCCceEEEEEec
Q 024366 59 IPFGYDRRRLSVEWAR 74 (268)
Q Consensus 59 ~~~~~~g~~i~v~~~~ 74 (268)
..|. |+.|.|.+..
T Consensus 81 ~~I~--Gr~irV~ln~ 94 (136)
T 2j8a_A 81 CFIM--GFKFEVILNK 94 (136)
T ss_dssp EEET--TEEEEEEECC
T ss_pred Ceec--CcEEEEEECc
Confidence 8886 9999999754
No 295
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=105.17 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=69.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||.|| |..+++++|+++|..||.|..|.| .++||||+|.+.++|++|+.. +..|+|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred ccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 4456789999999 899999999999999999999988 246999999999999999994 67899999999
Q ss_pred EEeecCCCC
Q 024366 161 EYALKDDSE 169 (268)
Q Consensus 161 ~~a~~~~~~ 169 (268)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876543
No 296
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6e-16 Score=111.11 Aligned_cols=74 Identities=26% Similarity=0.459 Sum_probs=68.7
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
..++|||+|| +..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|| .|||..|+|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999 889999999999999999999999 3579999999999999999 89999999999999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 297
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=106.64 Aligned_cols=77 Identities=17% Similarity=0.454 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCcc--------
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKL-------- 153 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~-------- 153 (268)
...+.++|||.|| |..+++++|+++|..||.|..|.| .++||||+|.+.++|++|++.|||..|
T Consensus 21 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3456789999999 889999999999999999999998 357999999999999999999999999
Q ss_pred CCcEEEEEEeecC
Q 024366 154 VDRVISVEYALKD 166 (268)
Q Consensus 154 ~g~~i~v~~a~~~ 166 (268)
.++.|.|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999754
No 298
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=3.2e-16 Score=108.71 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
++..+|||.|| |..+++++|+++|++||.|..+.+ .++||||+|.+.++|++|++.||+..|.|+.|.|++
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45689999999 899999999999999999875554 457999999999999999999999999999999998
Q ss_pred eec
Q 024366 163 ALK 165 (268)
Q Consensus 163 a~~ 165 (268)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-15 Score=104.42 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=69.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
......+|||+|| |..+++++|+++|..||.|.. |.| .+|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3455789999999 899999999999999999987 766 478999999999999999997 999999999999
Q ss_pred EEeecCC
Q 024366 161 EYALKDD 167 (268)
Q Consensus 161 ~~a~~~~ 167 (268)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987554
No 300
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.9e-16 Score=108.57 Aligned_cols=75 Identities=24% Similarity=0.492 Sum_probs=69.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe--------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
+.++|||+|| |..+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.|||..+.|+.|.|.|+
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4679999999 8899999999999999999998882 679999999999999999999999999999999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 301
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-16 Score=106.64 Aligned_cols=72 Identities=18% Similarity=0.406 Sum_probs=65.7
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
.+.++|||+|| |..+++++|+++|++||.|..+.+ .++||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999 889999999999999999999988 267999999999999999999999999998887655
Q ss_pred e
Q 024366 163 A 163 (268)
Q Consensus 163 a 163 (268)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 302
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=110.40 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=56.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-----------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-----------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSV 70 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-----------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v 70 (268)
+++|||+|||+++|+++|+++|++||+|. +.+ ++|||||+|.++++|++|++.|++ + +|+.|.+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--~G~~~~~ 82 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E--DGKLYLC 82 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E--TTEEEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c--CCcEEEe
Confidence 68999999999999999999999999999 655 168999999999999999998843 2 3666666
Q ss_pred EEe
Q 024366 71 EWA 73 (268)
Q Consensus 71 ~~~ 73 (268)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 303
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-15 Score=103.88 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEE-EE----eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~-~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
....++|||+|| |..+++++|+++|+.||.|..+ .| ..+.|||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345789999999 8899999999999999999999 46 23459999999999999999999999999999999998
Q ss_pred cCC
Q 024366 165 KDD 167 (268)
Q Consensus 165 ~~~ 167 (268)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 304
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.1e-15 Score=120.30 Aligned_cols=74 Identities=19% Similarity=0.461 Sum_probs=68.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||.++|+++|+++|+.||+|..|.| ++|+|||+|.+.++|.+|++.|||..|. |+.|.|.++
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~i~V~~a 202 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG--GQYLRVGKA 202 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS--SSBCEEEEC
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC--CcEEEEEEe
Confidence 478999999999999999999999999999998 2689999999999999999999999986 999999999
Q ss_pred ccCC
Q 024366 74 RGER 77 (268)
Q Consensus 74 ~~~~ 77 (268)
....
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 305
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=2.5e-16 Score=116.57 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=67.2
Q ss_pred CEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 37 GFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 37 g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
++||.+|.-++.+..++..+..+. . +...--.... ...........+|||.|| |..+++++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-g--g~~~g~~~g~---------~~~~~~~~~~~~lfV~nL-p~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-G--GQQMGRGSGD---------SEFTVQSTTGHCVHMRGL-PYKATENDIYNFFS 68 (139)
T ss_dssp -------------------------------------------------------CCCCEECCSC-CTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchhcc-C--CCCCCCCCCC---------cccCCCCCCCCEEEEeCC-CCCCCHHHHHHHHH
Confidence 577888877777666665443331 1 2221101000 011123345689999999 89999999999999
Q ss_pred cCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 117 PYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 117 ~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
+|| |+.|.| .+|||||+|.+.++|++|| .+|+..|+|+.|.|.++.....
T Consensus 69 ~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 69 PLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred hcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999 668887 4789999999999999999 7899999999999999876554
No 306
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=2.2e-15 Score=102.74 Aligned_cols=73 Identities=29% Similarity=0.516 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++ +++..++|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999988 25799999999999999997 4788899999999
Q ss_pred EEe
Q 024366 161 EYA 163 (268)
Q Consensus 161 ~~a 163 (268)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 307
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=2e-15 Score=109.96 Aligned_cols=74 Identities=19% Similarity=0.413 Sum_probs=68.1
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
...+|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|+ .|||..|+|+.|.|.++
T Consensus 35 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4689999999 889999999999999999999988 2579999999999999999 79999999999999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
....
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7544
No 308
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.7e-15 Score=114.14 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=67.7
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCC--cEEEEEEeecC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALKD 166 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g--~~i~v~~a~~~ 166 (268)
..+|||+|| ++.+++++|+++|++||.|..|.| .++||||+|.+.++|++|++.|||..|.| +.|.|+|++.+
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 456899999 899999999999999999999998 24699999999999999999999999965 99999999876
Q ss_pred C
Q 024366 167 D 167 (268)
Q Consensus 167 ~ 167 (268)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 309
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-15 Score=115.99 Aligned_cols=71 Identities=23% Similarity=0.496 Sum_probs=66.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..+.+ ++|+|||+|.+.++|.+|++.|||..+. |+.|.|.|+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a 164 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRINWA 164 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEES
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC--CcEEEEEec
Confidence 468999999999999999999999999999988 3679999999999999999999999986 999999998
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 310
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.4e-15 Score=103.89 Aligned_cols=74 Identities=16% Similarity=0.292 Sum_probs=68.7
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
...+|||+|| |..+++++|+++|++| .|..+.+ .+|||||+|.+.++|++|++.|||..++|+.|.|+|+....
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4678999999 8999999999999999 9998888 68999999999999999999999999999999999996543
No 311
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=112.08 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--EEE--------eCCeEEEEeccHHHHHHHHHhhCCC----ccC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--VRI--------RRNFAFVQFETQEEATKALESTDRS----KLV 154 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--~~i--------~~~~afV~f~~~~~a~~A~~~l~g~----~~~ 154 (268)
...+.++|||+|| |..+++++|+++|++||.|.. |.| .+|||||+|.+. +|.+|+..|||. .++
T Consensus 19 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 3456789999999 899999999999999999965 776 568999999999 999999999999 999
Q ss_pred CcEEEEEEeecCC
Q 024366 155 DRVISVEYALKDD 167 (268)
Q Consensus 155 g~~i~v~~a~~~~ 167 (268)
|+.|.|.++.+..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999997654
No 312
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=3.1e-15 Score=106.44 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=67.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|.+|++.+ +..++|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 4456789999999 889999999999999999999998 3579999999999999999986 59999999999
Q ss_pred EEeecCCC
Q 024366 161 EYALKDDS 168 (268)
Q Consensus 161 ~~a~~~~~ 168 (268)
.++..+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986553
No 313
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=103.18 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=66.7
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeC--C-eEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--N-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~--~-~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
....+|||+|| |..+++++|+++|+.||.|..|.+.+ + ||||+|.+.++|++|++ |||..|+|+.|.|.++..+.
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34679999999 89999999999999999999985521 1 99999999999999999 99999999999999886554
No 314
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=110.61 Aligned_cols=75 Identities=29% Similarity=0.587 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+..+|||+|| |..+++++|+++|++||.|..+.| .++||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556899999999 889999999999999999999998 368999999999999999999999999999999
Q ss_pred EEEe
Q 024366 160 VEYA 163 (268)
Q Consensus 160 v~~a 163 (268)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9886
No 315
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=114.78 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCC--CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g--~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+|||+|| +..+++++|+++|+.|| .|..|.| .+|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 89999999999999999 9999988 35799999999999999999999999999999999
Q ss_pred EeecC
Q 024366 162 YALKD 166 (268)
Q Consensus 162 ~a~~~ 166 (268)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99653
No 316
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.5e-15 Score=116.75 Aligned_cols=71 Identities=23% Similarity=0.539 Sum_probs=66.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|+|||+|.+.++|.+|++.|||..+. |+.|.|.|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC--CeEEEEEeC
Confidence 478999999999999999999999999999988 2689999999999999999999999986 999999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 317
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=9.4e-16 Score=103.12 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=61.0
Q ss_pred cEEEEEccCCCCC------CHHHHHHhhccCCCeEEEEEe------CCeEEEEeccHHHHHHHHHhhCCCccCCc-EEEE
Q 024366 94 KTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-VISV 160 (268)
Q Consensus 94 ~~l~v~~l~~~~~------~~~~l~~~f~~~g~v~~~~i~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~-~i~v 160 (268)
++|||+|| |..+ ++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..++|+ .|.|
T Consensus 2 ~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 68999999 7788 679999999999999999983 68999999999999999999999999998 8765
No 318
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=107.42 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=69.5
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCe-EEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v-~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
...+..+|||.|| |..+++++|+++|+.||.| ..|.| .+|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3445789999999 8999999999999999999 77777 578999999999999999997 999999999999
Q ss_pred EEeecCC
Q 024366 161 EYALKDD 167 (268)
Q Consensus 161 ~~a~~~~ 167 (268)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 319
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=2.5e-15 Score=115.73 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=65.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccC-CCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGY-DRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~-~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|+.||+|..|.+ ++|+|||+|.+.++|.+|++.|||..+.. .+++|.|.|+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 368999999999999999999999999999988 36899999999999999999999987652 2599999987
Q ss_pred c
Q 024366 74 R 74 (268)
Q Consensus 74 ~ 74 (268)
.
T Consensus 175 d 175 (175)
T 3nmr_A 175 D 175 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 320
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=107.16 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=65.8
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.....++|||+|| +..+++++|+++|+.|| |..|.| .+|||||+|.+.++|++|+ .|||..|+|+.|.
T Consensus 15 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456789999999 88999999999999999 999998 2579999999999999999 8999999999999
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
|.++.+.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 321
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.3e-15 Score=116.53 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=65.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+.+|+++|+++|++||+|..|.| ++|+|||+|.+.++|.+|++ +++..+. |+.|.|.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i~V~~a 163 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK--DRKIEIKRA 163 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS--SSCEEEEEC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC--CeEEEEeec
Confidence 368999999999999999999999999999998 35799999999999999998 8888886 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 322
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=3.6e-15 Score=114.12 Aligned_cols=72 Identities=29% Similarity=0.500 Sum_probs=66.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..+.+ ++|+|||+|.+.++|.+|++.|||..+.+.+++|.|.||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 468999999999999999999999999999988 248999999999999999999999999744599999985
No 323
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=9.9e-16 Score=101.40 Aligned_cols=67 Identities=27% Similarity=0.505 Sum_probs=62.4
Q ss_pred EEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 95 ~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
+|||+|| |..+++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++ ||+..++|+.|.|.+|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999 889999999999999999999988 35799999999999999998 9999999999999875
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=112.51 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--------EEE-----eCCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-----RRNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--------~~i-----~~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
...+.++|||+|| |..+++++|+++|+.||.|.. +.+ .+|||||+|.+.++|.+|+..|||..|.|
T Consensus 41 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3456889999999 889999999999999998865 333 46799999999999999999999999999
Q ss_pred cEEEEEEeecCCC
Q 024366 156 RVISVEYALKDDS 168 (268)
Q Consensus 156 ~~i~v~~a~~~~~ 168 (268)
+.|.|.|+.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999976543
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=9.6e-16 Score=107.58 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.1
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..+..+|||+|| |..+++++|+++|+.||.|..+.+ .+|||||+|.+.++|++|++ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999 899999999999999997755222 57899999999999999999 999999999999999
Q ss_pred eecCC
Q 024366 163 ALKDD 167 (268)
Q Consensus 163 a~~~~ 167 (268)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97654
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1e-16 Score=115.52 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE--------EEE--------eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~--------~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
..+.++|||+|| |..+++++|+++|+.||.|.. |.| .++||||+|.+.++|++|++.|||..|
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 346789999999 889999999999999999987 666 357999999999999999999999999
Q ss_pred CCcEEEEEEeecCCC
Q 024366 154 VDRVISVEYALKDDS 168 (268)
Q Consensus 154 ~g~~i~v~~a~~~~~ 168 (268)
.|+.|.|.++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987654
No 327
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=3.4e-15 Score=117.45 Aligned_cols=73 Identities=22% Similarity=0.506 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||..+|+++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+.|.|.++
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~a 191 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG--DKKLLVQRA 191 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET--TEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEEC
Confidence 379999999999999999999999999999988 2689999999999999999999999986 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 328
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=9.4e-16 Score=105.26 Aligned_cols=73 Identities=23% Similarity=0.504 Sum_probs=64.7
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
++|||+|| |..+++++|+++|+.||.|..+.+ .+|||||+|.+.+ |++|+..|||..++|+.|.|.+|..
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999 889999999999999999999998 2679999999999 9999999999999999999999987
Q ss_pred CCC
Q 024366 166 DDS 168 (268)
Q Consensus 166 ~~~ 168 (268)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 329
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=110.07 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=67.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
......+|||+|| |..+++++|+++|..||.|.. +.+ .+|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3445789999999 899999999999999999865 333 46899999999999999999 9999999999999
Q ss_pred EEeecC
Q 024366 161 EYALKD 166 (268)
Q Consensus 161 ~~a~~~ 166 (268)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999754
No 330
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=5.9e-15 Score=114.09 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
...+.++|||.|| +..+++++|+++|+.||.|..|.| .++||||+|.+.++|++|++.|||..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999 889999999999999999999999 35899999999999999999999999999999999
Q ss_pred EeecCC
Q 024366 162 YALKDD 167 (268)
Q Consensus 162 ~a~~~~ 167 (268)
|+....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997543
No 331
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=1.9e-15 Score=121.69 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=67.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCC--CeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g--~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
..++|||+|| +..+++++|+++|+.|| .|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999 89999999999999999 9999988 45799999999999999999999999999999999
Q ss_pred EeecC
Q 024366 162 YALKD 166 (268)
Q Consensus 162 ~a~~~ 166 (268)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 332
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=4.2e-15 Score=116.58 Aligned_cols=70 Identities=14% Similarity=0.341 Sum_probs=63.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
++|||+|||+++|+++|+++|++||+|..|.| .+|||||+|.+.++|.+|++.++ ..+ +|+.|.|.+...
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEEhHH
Confidence 78999999999999999999999999999988 46999999999999999997654 455 499999998764
No 333
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=8.3e-15 Score=116.04 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=70.4
Q ss_pred CCCcEEEEEccCC-CCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 91 RPTKTLFVINFDP-IRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 91 ~~~~~l~v~~l~~-~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
.++++|||+|| + ..+++++|+++|+.||.|..|.| .+|+|||+|.+.++|+.||+.|||..+.|+.|.|.++...
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 35789999999 6 79999999999999999999998 4699999999999999999999999999999999999754
Q ss_pred C
Q 024366 167 D 167 (268)
Q Consensus 167 ~ 167 (268)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 334
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=3.5e-15 Score=107.69 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCC---eEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~---v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.....+|||+|| |..+++++|+++|+.||. |..|.| .+|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999 899999999999999998 788877 46799999999999999999 999999999999
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 335
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2e-15 Score=100.36 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=63.6
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
++|||+|| |..+++++|+++|++||.|..+.+ .+|+|||+|.+.++|++|++.++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 889999999999999999999988 25799999999999999999999 9999999999987
No 336
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=7.9e-15 Score=121.93 Aligned_cols=72 Identities=22% Similarity=0.438 Sum_probs=66.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+++|||+|||..+|+++|+++|+.||.|..|.| .+|+|||+|.+.++|.+|++.|||..|. .|+.|+|.|++
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~ak 281 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKIT-QNNAMKISFAK 281 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeC-CCCEEEEEEec
Confidence 478999999999999999999999999999998 3599999999999999999999998874 48999999986
No 337
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=5.6e-15 Score=116.02 Aligned_cols=75 Identities=28% Similarity=0.500 Sum_probs=64.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+++|||+|||+++|+++|+++|+.||+|..|.| ++|||||+|.+.++|.+|++. ++..|. |+.|.|.++
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~--G~~i~v~~a 180 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN--GHNCEVRKA 180 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET--TEECEEEEC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC--CEEEEEEec
Confidence 378999999999999999999999999999988 368999999999999999975 777775 999999999
Q ss_pred ccCCCc
Q 024366 74 RGERGR 79 (268)
Q Consensus 74 ~~~~~~ 79 (268)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 866443
No 338
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=8.9e-15 Score=111.72 Aligned_cols=72 Identities=31% Similarity=0.548 Sum_probs=64.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
.++|||+|||..+|+++|+++|++||+|..+.+ ++|+|||+|.+.++|.+|++.|||..+.+...+|.|.||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 368999999999999999999999999999988 268999999999999999999999998733356888875
No 339
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=3.7e-15 Score=114.98 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccC
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGE 76 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~ 76 (268)
+++|||+|||..+|+++|+++|++||.|..+.. ++|+|||+|.+.++|.+|++.|||..|. |+.|.|.|+.++
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~~k 174 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRSVSLYYTGEK 174 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET--TEEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEEecCCC
Confidence 368999999999999999999999999988822 5799999999999999999999999886 999999998754
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=104.08 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=65.3
Q ss_pred CccEEEcCCCCCC-----------CHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCc
Q 024366 2 SRPIFVGNFEYET-----------RQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRR 66 (268)
Q Consensus 2 s~tl~V~nLp~~~-----------t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~ 66 (268)
+++|+|.||.... ++++|+++|++||+|..|.| ++|||||+|.+.++|.+|++.|||..|. |+
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--gr 92 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG--GR 92 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--TE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--Cc
Confidence 6899999994332 26899999999999999987 4799999999999999999999999986 99
Q ss_pred eEEEEEeccCC
Q 024366 67 RLSVEWARGER 77 (268)
Q Consensus 67 ~i~v~~~~~~~ 77 (268)
+|.|.++.+..
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999987653
No 341
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.1e-15 Score=103.67 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=65.7
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
...+|||.|| |..+++++|+++|+.| .|..|.| .+|||||+|.+.++|++|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999 8999999999999999 8989888 4789999999999999999 589999999999998886
Q ss_pred cC
Q 024366 165 KD 166 (268)
Q Consensus 165 ~~ 166 (268)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 342
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=4.5e-15 Score=109.46 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCC---eEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 158 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~---v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i 158 (268)
......+|||+|| |..+++++|+++|+.||. |..|.| .+|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3445789999999 899999999999999999 777777 46799999999999999999 99999999999
Q ss_pred EEEEeecC
Q 024366 159 SVEYALKD 166 (268)
Q Consensus 159 ~v~~a~~~ 166 (268)
.|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998643
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.1e-14 Score=102.66 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=65.2
Q ss_pred CCccEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEee---------CCEEEEEEcCHHHHHHHHHhcCCCCccCCCc
Q 024366 1 MSRPIFVGNFEY-----ETRQSELERLFSKYGRIERVDMK---------SGFAFVYFEDDRDAADAIRGLDNIPFGYDRR 66 (268)
Q Consensus 1 ~s~tl~V~nLp~-----~~t~~~l~~~F~~~G~v~~i~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~ 66 (268)
.+++|+|.||.. +.++++|+++|++||+|.+|.|. +|+|||+|.+.++|.+|++.|||..|. |+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--GR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--TE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--Cc
Confidence 478999999962 23799999999999999999882 589999999999999999999999996 99
Q ss_pred eEEEEEeccC
Q 024366 67 RLSVEWARGE 76 (268)
Q Consensus 67 ~i~v~~~~~~ 76 (268)
.|.|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998753
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=100.83 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCC
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 167 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~ 167 (268)
.+.++|||+|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++|+.. ...+.|..|.|.++.++.
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 35789999999 899999999999999999999999 479999999999999764332 344589999999987665
Q ss_pred C
Q 024366 168 S 168 (268)
Q Consensus 168 ~ 168 (268)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.7e-14 Score=98.64 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=60.2
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCc--cCCcEEEEEEe
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYA 163 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~--~~g~~i~v~~a 163 (268)
...+..+|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++ |++.. +.|..|.|.++
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 4456889999999 899999999999999999999999 47999999999999984 45555 45999999999
Q ss_pred ecCC
Q 024366 164 LKDD 167 (268)
Q Consensus 164 ~~~~ 167 (268)
.++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 346
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1e-14 Score=99.35 Aligned_cols=70 Identities=29% Similarity=0.516 Sum_probs=64.9
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccC----C-------CeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRV 157 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~----g-------~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 157 (268)
.+..+|||+|| |..+++++|+++|++| | .|..+.+ .++||||+|.+.++|++|+ .|||..++|+.
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 35789999999 8899999999999999 8 8999998 5899999999999999999 99999999999
Q ss_pred EEEEE
Q 024366 158 ISVEY 162 (268)
Q Consensus 158 i~v~~ 162 (268)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99863
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=4.5e-15 Score=105.27 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCC---eEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEE
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 158 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~---v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i 158 (268)
......+|||+|| |..+++++|+++|+.||. |..|.| .+|||||+|.+.++|++||+ ||+..++|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3446789999999 899999999999999998 888888 46799999999999999999 99999999999
Q ss_pred EEEEeecC
Q 024366 159 SVEYALKD 166 (268)
Q Consensus 159 ~v~~a~~~ 166 (268)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 348
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.8e-14 Score=116.19 Aligned_cols=73 Identities=21% Similarity=0.391 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||+.+|+++|+++|++|| +|..|.| .+|+|||+|.+.++|.+|++.|+|..+. .|+.|.|.|+++
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v~~a~~ 227 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSFSKS 227 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccC-CCCeEEEEEecC
Confidence 47899999999999999999999999 9999999 6899999999999999999999999883 389999999874
No 349
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=114.43 Aligned_cols=73 Identities=21% Similarity=0.391 Sum_probs=68.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYG-RIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
+++|||+|||..+|+++|+++|+.|| +|..|.| .+|+|||+|.+.++|.+|++.|||..+. +|+.|.|.|+++
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~a~~ 196 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSFSKS 196 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEEEeecc
Confidence 57899999999999999999999999 9999999 5799999999999999999999999883 389999999874
No 350
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=3.6e-14 Score=119.88 Aligned_cols=73 Identities=14% Similarity=0.263 Sum_probs=64.2
Q ss_pred CccEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCcc-CCCc--eEEEEEec
Q 024366 2 SRPIFVGN--FEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFG-YDRR--RLSVEWAR 74 (268)
Q Consensus 2 s~tl~V~n--Lp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~g~--~i~v~~~~ 74 (268)
+++|||+| |+..+|+++|+++|++||+|+.|.| .+|||||+|.+.++|++|++.|||..+. ..|+ .|.|.++.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 57999999 5789999999999999999999998 7899999999999999999999999872 2245 57777764
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=4.5e-14 Score=99.41 Aligned_cols=76 Identities=26% Similarity=0.276 Sum_probs=65.8
Q ss_pred CCCCcEEEEEccC-CC---CCCHHHHHHhhccCCCeEEEEEe---------CCeEEEEeccHHHHHHHHHhhCCCccCCc
Q 024366 90 QRPTKTLFVINFD-PI---RTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDR 156 (268)
Q Consensus 90 ~~~~~~l~v~~l~-~~---~~~~~~l~~~f~~~g~v~~~~i~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 156 (268)
..++.+|+|.|+- |. ...+++|+++|++||.|..|.|. +|+|||+|.+.++|++|++.|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3468899999992 11 23689999999999999999882 57999999999999999999999999999
Q ss_pred EEEEEEeec
Q 024366 157 VISVEYALK 165 (268)
Q Consensus 157 ~i~v~~a~~ 165 (268)
.|.|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-13 Score=98.66 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCCCcEEEEEccCCCCC-----------CHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCcc
Q 024366 89 NQRPTKTLFVINFDPIRT-----------RERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKL 153 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~-----------~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~ 153 (268)
...++.+|+|.|| .... .+++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4457899999999 3222 25799999999999999987 479999999999999999999999999
Q ss_pred CCcEEEEEEeecCC
Q 024366 154 VDRVISVEYALKDD 167 (268)
Q Consensus 154 ~g~~i~v~~a~~~~ 167 (268)
+|+.|.|.|+.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997654
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.3e-14 Score=115.04 Aligned_cols=78 Identities=27% Similarity=0.350 Sum_probs=69.0
Q ss_pred CCCCcEEEEEccCCCCC---------CHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCcc-----
Q 024366 90 QRPTKTLFVINFDPIRT---------RERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL----- 153 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~---------~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~----- 153 (268)
.....+|||+|| +..+ ++++|+++|++||.|..|.| .+|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 446789999999 6676 69999999999999999998 789999999999999999999999999
Q ss_pred -------CCcEEEEEEeecCCC
Q 024366 154 -------VDRVISVEYALKDDS 168 (268)
Q Consensus 154 -------~g~~i~v~~a~~~~~ 168 (268)
.|..|.|.||.....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 354
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=5e-15 Score=97.95 Aligned_cols=67 Identities=25% Similarity=0.447 Sum_probs=62.1
Q ss_pred EEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEe
Q 024366 95 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 163 (268)
Q Consensus 95 ~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a 163 (268)
+|||+|| |..+++++|+++|++||.|..+.+ .+|||||+|.+.++|++|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999 889999999999999999999988 367999999999999999995 899999999999875
No 355
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=4.5e-14 Score=102.48 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=65.2
Q ss_pred CCCCcEEEEEccCCCCCCHHHHHHhhccCCCeE--EEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEE
Q 024366 90 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--HVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 160 (268)
Q Consensus 90 ~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~--~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v 160 (268)
.....+|||+|| |+.+++++|+++|+.| .|. .|.| .+|||||+|.+.++|++||+. ++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 345789999999 8999999999999999 566 7777 478999999999999999995 779999999999
Q ss_pred EEeecC
Q 024366 161 EYALKD 166 (268)
Q Consensus 161 ~~a~~~ 166 (268)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888543
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=2.1e-14 Score=100.80 Aligned_cols=74 Identities=24% Similarity=0.490 Sum_probs=67.6
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
+.++|||+|| |..+++++|+++|+.||.|..|.| .+|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4689999999 889999999999999999999998 35899999999999999999 8999999999999998
Q ss_pred cCCC
Q 024366 165 KDDS 168 (268)
Q Consensus 165 ~~~~ 168 (268)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6653
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.7e-13 Score=94.31 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=59.6
Q ss_pred ccEEEcCCC-------CCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 3 RPIFVGNFE-------YETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 3 ~tl~V~nLp-------~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
..|.|.... ..+|+++|+++|++||+|.+|.| ++|||||+|.+.++|..|++.+++. .+++|.|.|
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~----~g~~l~V~~ 86 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGL----VDNPLKISW 86 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBC----SSSBCEEEC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCC----CCCeEEEEE
Confidence 356665554 45899999999999999999999 6899999999999999999876553 389999999
Q ss_pred eccCC
Q 024366 73 ARGER 77 (268)
Q Consensus 73 ~~~~~ 77 (268)
+....
T Consensus 87 a~~~~ 91 (100)
T 2d9o_A 87 LEGQP 91 (100)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87654
No 358
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=103.76 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=65.4
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCe----EEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v----~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
....+|||.|| |+.+++++|+++|++||.| ..|.| .+|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 45689999999 8999999999999999975 46666 468999999999999999996 99999999999
Q ss_pred EEEeecC
Q 024366 160 VEYALKD 166 (268)
Q Consensus 160 v~~a~~~ 166 (268)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=9.4e-14 Score=108.84 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=65.0
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
..++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.++ ..++|+.|.|.++.
T Consensus 108 ~~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 3579999999 889999999999999999999988 36899999999999999998654 69999999999875
Q ss_pred c
Q 024366 165 K 165 (268)
Q Consensus 165 ~ 165 (268)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.8e-13 Score=96.31 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=64.0
Q ss_pred CCccEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEEEee----------CCEEEEEEcCHHHHHHHHHhcCCCC
Q 024366 1 MSRPIFVGNF--EYETR--------QSELERLFSKYGRIERVDMK----------SGFAFVYFEDDRDAADAIRGLDNIP 60 (268)
Q Consensus 1 ~s~tl~V~nL--p~~~t--------~~~l~~~F~~~G~v~~i~i~----------~g~afV~f~~~~~a~~a~~~l~~~~ 60 (268)
.|+.|.|.|+ |..+. +++|++.|++||+|.+|.|. +|+|||+|.++++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3788999998 44443 47999999999999999982 5899999999999999999999999
Q ss_pred ccCCCceEEEEEecc
Q 024366 61 FGYDRRRLSVEWARG 75 (268)
Q Consensus 61 ~~~~g~~i~v~~~~~ 75 (268)
+. |+.|.|.++..
T Consensus 84 f~--GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FA--NRVVVTKYCDP 96 (105)
T ss_dssp ET--TEECEEEEECH
T ss_pred eC--CCEEEEEEeCH
Confidence 96 99999999764
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.2e-13 Score=95.89 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=65.1
Q ss_pred CCCcEEEEEcc-CCCCCC--------HHHHHHhhccCCCeEEEEEe----------CCeEEEEeccHHHHHHHHHhhCCC
Q 024366 91 RPTKTLFVINF-DPIRTR--------ERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRS 151 (268)
Q Consensus 91 ~~~~~l~v~~l-~~~~~~--------~~~l~~~f~~~g~v~~~~i~----------~~~afV~f~~~~~a~~A~~~l~g~ 151 (268)
.|+++|+|.|+ ++..+. +++|+++|++||.|..|.|. +|+|||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 332332 37899999999999999982 589999999999999999999999
Q ss_pred ccCCcEEEEEEeec
Q 024366 152 KLVDRVISVEYALK 165 (268)
Q Consensus 152 ~~~g~~i~v~~a~~ 165 (268)
.++|+.|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999854
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=90.52 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=56.4
Q ss_pred CCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecCCC
Q 024366 104 IRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 168 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~~~ 168 (268)
..+++++|+++|++||.|..|.| .+|||||+|.+.++|+.|++.+++ +.|+.|.|.|+..+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 46899999999999999999999 678999999999999999998655 6799999999976653
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=6e-13 Score=95.48 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=63.2
Q ss_pred CccEEEcCCC--CCC---CHHHHHHHHhcCCCeeEEEee------------CCEEEEEEcCHHHHHHHHHhcCCCCccCC
Q 024366 2 SRPIFVGNFE--YET---RQSELERLFSKYGRIERVDMK------------SGFAFVYFEDDRDAADAIRGLDNIPFGYD 64 (268)
Q Consensus 2 s~tl~V~nLp--~~~---t~~~l~~~F~~~G~v~~i~i~------------~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 64 (268)
+++|+|.|+- .++ .+++|++.|++||+|.+|.|. +|+|||+|.+.++|.+|++.|||..|.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~-- 97 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-- 97 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 7899999993 223 378999999999999999881 279999999999999999999999986
Q ss_pred CceEEEEEecc
Q 024366 65 RRRLSVEWARG 75 (268)
Q Consensus 65 g~~i~v~~~~~ 75 (268)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=8.1e-13 Score=108.57 Aligned_cols=76 Identities=33% Similarity=0.479 Sum_probs=70.6
Q ss_pred CCCCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 89 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
...+.++|||+|| |..+++++|+++|+.||.|..|.+ .+|||||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3455789999999 889999999999999999999999 589999999999999999999999999999999999864
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=6.2e-14 Score=98.61 Aligned_cols=63 Identities=24% Similarity=0.462 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHH------------hcCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEE
Q 024366 9 NFEYETRQSELERLF------------SKYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLS 69 (268)
Q Consensus 9 nLp~~~t~~~l~~~F------------~~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~ 69 (268)
|||..+++++|++.| ++||+|..|.| ++|||||+|.++++|.+|++.|||..+. |++|.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~--Gr~i~ 99 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN--GQPIH 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET--TEECC
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC--CEEEE
Confidence 344455666666655 99999999999 3799999999999999999999999986 99999
Q ss_pred EEEe
Q 024366 70 VEWA 73 (268)
Q Consensus 70 v~~~ 73 (268)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=9.6e-13 Score=93.79 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=64.8
Q ss_pred CCCCcEEEEEcc-CCCCC--------CHHHHHHhhccCCCeEEEEE----eCCeEEEEeccHHHHHHHHHhhCCCccCCc
Q 024366 90 QRPTKTLFVINF-DPIRT--------RERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDR 156 (268)
Q Consensus 90 ~~~~~~l~v~~l-~~~~~--------~~~~l~~~f~~~g~v~~~~i----~~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 156 (268)
..++++|.|.|+ ++... .++||+++|++||.|..|.| .+|++||+|.+.++|++|++.|||..++|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 346889999998 22221 13688999999999999999 469999999999999999999999999999
Q ss_pred EEEEEEeec
Q 024366 157 VISVEYALK 165 (268)
Q Consensus 157 ~i~v~~a~~ 165 (268)
.|.|.|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999853
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=9.7e-13 Score=94.40 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCcEEEEEcc-CCCC---CCHHHHHHhhccCCCeEEEEE----e--------CCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 92 PTKTLFVINF-DPIR---TRERDIKRHFEPYGNVLHVRI----R--------RNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 92 ~~~~l~v~~l-~~~~---~~~~~l~~~f~~~g~v~~~~i----~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
|+.+|+|.|+ ++.+ -.++||++.|++||.|..|.| . +|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6889999998 2211 236899999999999999988 1 2799999999999999999999999999
Q ss_pred cEEEEEEeec
Q 024366 156 RVISVEYALK 165 (268)
Q Consensus 156 ~~i~v~~a~~ 165 (268)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-12 Score=92.36 Aligned_cols=69 Identities=16% Similarity=0.343 Sum_probs=57.7
Q ss_pred CCCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE-----------eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 91 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 91 ~~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i-----------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...++|||+|| |..+++++|+++|++||.|. +.+ .+|||||+|.+.++|++||+.|+ .++|..+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45789999999 89999999999999999999 655 16899999999999999999984 25666665
Q ss_pred EEEe
Q 024366 160 VEYA 163 (268)
Q Consensus 160 v~~a 163 (268)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5443
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.1e-12 Score=110.81 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=66.2
Q ss_pred CCCCCcEEEEEcc-CCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccC---Cc--EEEE
Q 024366 89 NQRPTKTLFVINF-DPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLV---DR--VISV 160 (268)
Q Consensus 89 ~~~~~~~l~v~~l-~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~--~i~v 160 (268)
...|+.+|||+|+ .+..+++++|+++|++||.|..|.+ .+|||||+|.+.++|++|++.|||.++. |. .|.+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 4567899999994 1678999999999999999999988 7899999999999999999999999873 44 5777
Q ss_pred EEee
Q 024366 161 EYAL 164 (268)
Q Consensus 161 ~~a~ 164 (268)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7774
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=2.9e-12 Score=91.25 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=62.6
Q ss_pred CccEEEcCCC--CCC--------CHHHHHHHHhcCCCeeEEEe----eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCce
Q 024366 2 SRPIFVGNFE--YET--------RQSELERLFSKYGRIERVDM----KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRR 67 (268)
Q Consensus 2 s~tl~V~nLp--~~~--------t~~~l~~~F~~~G~v~~i~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~ 67 (268)
++.|.|.|+= ... .+++|++.|++||+|.+|.| .+|+|||+|.+.++|.+|++.|||..|. |+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--GR~ 84 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--GKM 84 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET--TEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEE
Confidence 5778899883 221 25688999999999999999 3799999999999999999999999996 999
Q ss_pred EEEEEeccC
Q 024366 68 LSVEWARGE 76 (268)
Q Consensus 68 i~v~~~~~~ 76 (268)
|.|.++...
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998643
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.4e-12 Score=93.15 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=61.2
Q ss_pred cEEEEEcc----CCCCCCHHHHHHhhccCCCeEEEEE--------eCCeEEEEecc----HHH----HHHHHH--hhCCC
Q 024366 94 KTLFVINF----DPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFET----QEE----ATKALE--STDRS 151 (268)
Q Consensus 94 ~~l~v~~l----~~~~~~~~~l~~~f~~~g~v~~~~i--------~~~~afV~f~~----~~~----a~~A~~--~l~g~ 151 (268)
..|||+|| + ..+++++|+++|+.||+|..+.+ ++|||||+|.+ +++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 5 68999999999999999999988 68899999996 433 788888 78999
Q ss_pred ccCCcEEEEEEee
Q 024366 152 KLVDRVISVEYAL 164 (268)
Q Consensus 152 ~~~g~~i~v~~a~ 164 (268)
.|+|+.|.|.+-.
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999864
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9e-12 Score=88.89 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=62.9
Q ss_pred ccEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEeeC--CEEEEEEcC-HHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYE-TRQSELERLFSKYGRIERVDMKS--GFAFVYFED-DRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~-~t~~~l~~~F~~~G~v~~i~i~~--g~afV~f~~-~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
..|||+||+.. ++.++|+++|++||+|.+|.+.. ..|||.|.+ +++|..|++.|+...+.+++..++++...
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 57999999999 99999999999999999999944 489999999 89999999999766555568888887654
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=3.8e-12 Score=89.39 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=54.0
Q ss_pred EccCCCCCCHHHHHHhh------------ccCCCeEEEEEe-------CCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 99 INFDPIRTRERDIKRHF------------EPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 99 ~~l~~~~~~~~~l~~~f------------~~~g~v~~~~i~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
.|| +..+++++|++.| ++||.|..|.|. +|+|||+|.+.++|++|+..|||..++|+.|.
T Consensus 21 ~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 344 3445565555555 999999999993 68999999999999999999999999999999
Q ss_pred EEEe
Q 024366 160 VEYA 163 (268)
Q Consensus 160 v~~a 163 (268)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.6e-11 Score=80.46 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=66.2
Q ss_pred CCCCCcEEEEEccCC---CCCCH----HHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEE
Q 024366 89 NQRPTKTLFVINFDP---IRTRE----RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 161 (268)
Q Consensus 89 ~~~~~~~l~v~~l~~---~~~~~----~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~ 161 (268)
..+|..+|+|..+++ ....+ .+|.+.|.+||.|..+.|..+.+||+|.+.++|.+|++ |||..++|+.|+|+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 456778888887721 22323 67999999999999999988889999999999999998 99999999999999
Q ss_pred EeecCC
Q 024366 162 YALKDD 167 (268)
Q Consensus 162 ~a~~~~ 167 (268)
++.+.-
T Consensus 82 lkt~dW 87 (91)
T 2dnr_A 82 LKSPSG 87 (91)
T ss_dssp ECCCSS
T ss_pred eCCCCc
Confidence 997654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.1e-10 Score=81.86 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCCCCcEEEEEccCCCC-CCHHHHHHhhccCCCeEEEEEeC--CeEEEEecc-HHHHHHHHHhhC--CCccCCcEEEEE
Q 024366 88 ANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRR--NFAFVQFET-QEEATKALESTD--RSKLVDRVISVE 161 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~~-~~~~~l~~~f~~~g~v~~~~i~~--~~afV~f~~-~~~a~~A~~~l~--g~~~~g~~i~v~ 161 (268)
...+++..|+|.|| +.. ++.++|+++|+.||.|..|.+.. ..|||.|.+ ..+|..|+.+|+ +..|.|..++++
T Consensus 13 ~~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 13 LEEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CSCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35567899999999 677 99999999999999999999944 489999999 899999999995 788999999988
Q ss_pred Eee
Q 024366 162 YAL 164 (268)
Q Consensus 162 ~a~ 164 (268)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.6e-11 Score=78.88 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=60.3
Q ss_pred cEEEcCCC----CCCCH----HHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 4 PIFVGNFE----YETRQ----SELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 4 tl~V~nLp----~~~t~----~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
||+|.-++ .++-. .+|.+.|.+||+|..+++..+.+||+|.+.++|.+|++ |||..+. |+.|+|+++.+
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~--Gr~LkV~lkt~ 85 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL--NRTITIALKSP 85 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET--TEEEEEEECCC
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC--CeEEEEEeCCC
Confidence 67777666 23434 67899999999999999988889999999999999998 9999986 99999999875
Q ss_pred C
Q 024366 76 E 76 (268)
Q Consensus 76 ~ 76 (268)
.
T Consensus 86 d 86 (91)
T 2dnr_A 86 S 86 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.9e-10 Score=76.42 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEEccCCC----CCCH----HHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEE
Q 024366 88 ANQRPTKTLFVINFDPI----RTRE----RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVIS 159 (268)
Q Consensus 88 ~~~~~~~~l~v~~l~~~----~~~~----~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~ 159 (268)
...+|..+|+|..+++. ...+ .+|.+.|..||.|..+.|..+-+||+|.+.++|.+||+ |||.+++|+.|+
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45678899999988321 1222 56899999999999999988889999999999999999 999999999999
Q ss_pred EEEe
Q 024366 160 VEYA 163 (268)
Q Consensus 160 v~~a 163 (268)
|++.
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9875
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=7.2e-10 Score=74.49 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=58.5
Q ss_pred cEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIFVGNFEYE-----TRQ----SELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nLp~~-----~t~----~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
||+|.-++.. +-. .+|.+.|.+||+|..+++...-+||+|.+.++|.+|++ |+|..+. |+.|+|.+..
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~--Gr~L~V~~k~ 93 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVK--GRAVKISGPS 93 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEET--TEEEEEECCC
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeC--CeEEEEeccC
Confidence 7888877643 333 56889999999999999988889999999999999998 9999997 9999998643
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=4.1e-08 Score=78.35 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=60.6
Q ss_pred CCcEEEEEccC----CCCCCHHHHHHhhccCCCeEEEEEe------------CCeEEEEeccHHHHHHHHHhhCCCccCC
Q 024366 92 PTKTLFVINFD----PIRTRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLVD 155 (268)
Q Consensus 92 ~~~~l~v~~l~----~~~~~~~~l~~~f~~~g~v~~~~i~------------~~~afV~f~~~~~a~~A~~~l~g~~~~g 155 (268)
....+.+.|+- ...-.+++|.+.|++||.|..+.|. +|++||+|.+.++|++|++.|||..++|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34555565551 1223468899999999999999882 3699999999999999999999999999
Q ss_pred cEEEEEEeec
Q 024366 156 RVISVEYALK 165 (268)
Q Consensus 156 ~~i~v~~a~~ 165 (268)
+.|.+.|+..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999999853
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=2.5e-08 Score=79.64 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=54.3
Q ss_pred CCHHHHHHHHhcCCCeeEEEe------------eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 14 TRQSELERLFSKYGRIERVDM------------KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i~i------------~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
-.+++|.+.|++||+|..+.| .+|++||+|.+.++|.+|++.|||..+. |++|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~--gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA--GRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--SSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--CeEEEEEEcCH
Confidence 457889999999999999988 2489999999999999999999999986 99999999763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.2e-07 Score=64.99 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKY-----GRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~-----G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
.+||-|-|||..+++..|+.|++++ |.|..|.+ .-+-|+|+|.+...|.+|.-+|+|..|. |++|.|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~--gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ--GKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET--TEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec--CeEEEecC
Confidence 3689999999999999999999999 99999988 4688999999999999999899999997 99998874
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=4.1e-07 Score=61.86 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=67.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKY-----GRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~-----G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
++|.|.|||+.+.++.|.-+|+.- |+|..+....+-|+|+|.+.+.|+.+|+ -....|. +..|.|......
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L~--~~~LsV~P~~~~- 84 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHELH--GAQLSLRPAPPR- 84 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBSS--SSBCEEEECCCC-
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCcceec--CeEEEEEcCCCC-
Confidence 689999999999999999999872 6999999977999999999999999975 2244454 788888765432
Q ss_pred CcCCCCCCCcCCCCCCcEEEEEccCCCCC
Q 024366 78 GRHRDGSKSMANQRPTKTLFVINFDPIRT 106 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 106 (268)
...+|++.+| +..+
T Consensus 85 --------------~~~r~ll~gl-~~~t 98 (104)
T 2dhx_A 85 --------------APARLLLQGL-PPGT 98 (104)
T ss_dssp --------------CCCCCCCCSC-CCCC
T ss_pred --------------CcceEeeecC-CCCC
Confidence 3567778888 4444
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=4.4e-07 Score=62.19 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=63.6
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccC-----CCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 162 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~-----g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~ 162 (268)
..+|-+.|| |..+++..|+.+++++ |.+..|.+ ..+-|+|+|.+...|-+|.-+|+|.+|+|+.|.+.-
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 678999999 8999999999999999 99999998 557899999999999999999999999999998753
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=1.1e-06 Score=59.96 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCccEEEcCCCCCC-C----HHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 1 MSRPIFVGNFEYET-R----QSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 1 ~s~tl~V~nLp~~~-t----~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
+.+||+|+||+..+ + .+.|+++|..|+++..... +=.=..|.|.++++|.+|-..|++..+. |..|+|.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~--g~~~r~YFg 81 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFL--GKEMKLYFA 81 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEET--TEECEEECC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceec--CceeEEEec
Confidence 45799999999865 3 2577899999999988776 3345789999999999999999999997 999999998
Q ss_pred ccC
Q 024366 74 RGE 76 (268)
Q Consensus 74 ~~~ 76 (268)
...
T Consensus 82 q~~ 84 (104)
T 1wey_A 82 QTL 84 (104)
T ss_dssp CCS
T ss_pred CCC
Confidence 743
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.16 E-value=5.2e-06 Score=55.75 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=47.7
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
.++| ++|+.+...||.++|..||.|.=-+|....|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999999777667789999999999999999998775
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.12 E-value=5e-06 Score=55.98 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=47.7
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
.++| ++|+.+...||.++|..||.|.=-+|....|||.|.+++.|..|+..+...
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~ 62 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYA 62 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTC
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccC
Confidence 4566 999999999999999999966655668999999999999999999877533
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.00 E-value=1.6e-05 Score=53.43 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=52.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEee----------CCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMK----------SGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~----------~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
++|.|.+||+++|++++.+.+..+.++...... -.-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 578999999999999999999999877665551 247999999999999999999999874
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00023 Score=48.42 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=62.3
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhcc---C--CCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEP---Y--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~---~--g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
...+|.|.|| |..+.++.|.-+|++ - |.|..+....+-|+|+|.+.+.|+..+++ ..+.+.+..|.|.-..+.
T Consensus 7 ~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 7 GGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred CccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 4679999999 778999999999987 2 48999999779999999999999999885 468889999999665444
Q ss_pred C
Q 024366 167 D 167 (268)
Q Consensus 167 ~ 167 (268)
.
T Consensus 85 ~ 85 (104)
T 2dhx_A 85 A 85 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=5.8e-05 Score=51.54 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=60.8
Q ss_pred CcEEEEEccCCCCC-C----HHHHHHhhccCCCeEEEEEeC--CeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeec
Q 024366 93 TKTLFVINFDPIRT-R----ERDIKRHFEPYGNVLHVRIRR--NFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 165 (268)
Q Consensus 93 ~~~l~v~~l~~~~~-~----~~~l~~~f~~~g~v~~~~i~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~ 165 (268)
.++|+|+||++ .+ . .+.++++|..|+++....+-+ .-..|.|.++++|.+|-..||+..+.|..|++-|+..
T Consensus 5 pntLiitnl~~-~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVAND-DVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCG-GGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCH-HHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 57899999943 22 1 267899999999888777744 4688999999999999999999999999999999984
Q ss_pred C
Q 024366 166 D 166 (268)
Q Consensus 166 ~ 166 (268)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.75 E-value=0.00018 Score=48.29 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=48.1
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
...++| ++ |.+....||.++|+.||.|.--.|...-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 456666 99 88999999999999999777667789999999999999999998763
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00034 Score=49.08 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=56.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
+-|.|-+.|+.. .+.|...|++||+|.+... ..+...|.|.+..+|++||. .||+.+. ++..|-|.++.
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~-g~~mIGV~p~~ 95 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFG-ESIMIGVKPCI 95 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEET-TTEECEEEECC
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEec-CCEEEEEEECC
Confidence 457888999884 7788899999999999888 45899999999999999996 7998884 23556666654
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.58 E-value=0.0001 Score=49.70 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=49.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe----------eCCEEEEEEcCHHHHHHHHHhcCCCCcc
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM----------KSGFAFVYFEDDRDAADAIRGLDNIPFG 62 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~ 62 (268)
+-+|.|..||+.+||+++.+.+..+-++..... .-.-|||.|.+.+++....+.++|..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 457999999999999999988887655433222 1257899999999999999999999874
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.0002 Score=48.24 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=46.6
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
..++| ++ |.+....||.++|+.||.|.--.|...-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99 88999999999999999666666689999999999999999999764
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.0007 Score=47.50 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=56.4
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE--eCCeEEEEeccHHHHHHHHHhhCCCccCC-cEEEEEEe
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 163 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i--~~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~i~v~~a 163 (268)
....|.|.++ |.. ....|-..|++||.|..... ..+...|.|.+..+|++||.+ ||..++| -.|-|...
T Consensus 23 ~~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 3678999999 544 46788899999999999888 557999999999999999995 9999985 44555553
No 395
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.17 E-value=0.0018 Score=43.30 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=56.3
Q ss_pred cEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeC----------CeEEEEeccHHHHHHHHHhhCCCccCC-----cEE
Q 024366 94 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR----------NFAFVQFETQEEATKALESTDRSKLVD-----RVI 158 (268)
Q Consensus 94 ~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~i 158 (268)
.+|.|.+| |..++++++.+.++....+....+.. .-|+|.|.+.+++....+.++|..+-+ ...
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999 78999999999999998877666622 279999999999999999999988743 233
Q ss_pred EEEEee
Q 024366 159 SVEYAL 164 (268)
Q Consensus 159 ~v~~a~ 164 (268)
.|++|.
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 466654
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.93 E-value=0.00035 Score=61.04 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=40.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe---eCCEEEEEEcCHHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM---KSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i---~~g~afV~f~~~~~a~~a~~ 54 (268)
++|+|. .|..+++.+|.++|++||+|.++.+ ...||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 689997 7999999999999999999999998 34599999999999997764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.42 E-value=0.0083 Score=40.40 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=54.2
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEe----------CCeEEEEeccHHHHHHHHHhhCCCccCC-----cE
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD-----RV 157 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~----------~~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 157 (268)
+-+|.|..| |..++++++.+.+...-.+....+. -.-|+|.|.+.+++....+.++|..+-+ ..
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 567999999 7789999999988877665443331 1369999999999999999999977643 34
Q ss_pred EEEEEee
Q 024366 158 ISVEYAL 164 (268)
Q Consensus 158 i~v~~a~ 164 (268)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.23 E-value=0.0082 Score=42.69 Aligned_cols=69 Identities=13% Similarity=0.315 Sum_probs=53.5
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEE-EEE---------------------eCCeEEEEeccHHHHHHHHHhhCC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI---------------------RRNFAFVQFETQEEATKALESTDR 150 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~-~~i---------------------~~~~afV~f~~~~~a~~A~~~l~g 150 (268)
...|.|.++ |... ...+-+.|++||.|.. +.+ ..+...|+|++..+|++||.+ ||
T Consensus 7 e~~VtVFGF-p~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 7 ELAILVFGY-PETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp -CEEEEECC-CGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred ceEEEEEec-CHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 457889999 6444 5678889999999876 211 346779999999999999994 99
Q ss_pred CccCCcEEEEEEee
Q 024366 151 SKLVDRVISVEYAL 164 (268)
Q Consensus 151 ~~~~g~~i~v~~a~ 164 (268)
..|+|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776653
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.02 E-value=0.016 Score=51.56 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=49.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIP 60 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~ 60 (268)
..++|+ +|+.+...+|.++|+.||.|.-.+|....|||.|.+.+.|..++..++..+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~ 497 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAE 497 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTTCS
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 356666 999999999999999999887677799999999999999999999886443
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.92 E-value=0.0094 Score=42.38 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=51.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEe---------------------eCCEEEEEEcCHHHHHHHHHhcCCCC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIER-VDM---------------------KSGFAFVYFEDDRDAADAIRGLDNIP 60 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~-i~i---------------------~~g~afV~f~~~~~a~~a~~~l~~~~ 60 (268)
.-|.|-+.|+. ....|.+.|++||.|.+ +.+ ..+...|+|.+..+|.+||. .||+.
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 35778888664 45667788999999965 211 25688999999999999996 78988
Q ss_pred ccCCCceEEEEEec
Q 024366 61 FGYDRRRLSVEWAR 74 (268)
Q Consensus 61 ~~~~g~~i~v~~~~ 74 (268)
|. |.-|-|.+..
T Consensus 86 i~--G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FN--GVLLGVIPYT 97 (132)
T ss_dssp ET--TEECEEEECC
T ss_pred eC--cEEEEEEECC
Confidence 85 6666676654
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.31 E-value=0.0078 Score=52.59 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=39.5
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEE---eCCeEEEEeccHHHHHHHHHh
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALES 147 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i---~~~~afV~f~~~~~a~~A~~~ 147 (268)
...|+|. . +..+++.+|.++|++||+|..+.+ ...||.|||.+.+++..++..
T Consensus 53 ~rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4688997 6 678999999999999999999988 334999999999998877653
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.50 E-value=0.38 Score=42.69 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=46.7
Q ss_pred CcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 93 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 93 ~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
...++|+ + +..+...+|.++|+.||.|.-..|....|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 4566665 7 66778899999999999776666788999999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=90.44 E-value=2.5 Score=27.54 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=48.8
Q ss_pred CCcEEEEEccCCCCCCHHHHHHhhccCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 92 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 92 ~~~~l~v~~l~~~~~~~~~l~~~f~~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
..+-|.|-|+ |..+-..++.-.....|---.|....|.|.|.|.+.++...|+.+|-
T Consensus 11 qnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHH
Confidence 4667889999 77788888887788888777888899999999999999999999873
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.73 E-value=3.5 Score=26.85 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=53.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEE
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEW 72 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~ 72 (268)
++-|.|-|||..+-..++.-...-.|---.|..-.|.|+|.|.+.++...|++.|-+. +..++.|+.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnh----nnnklqiei 78 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNH----NNNKLQIEI 78 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEET----TTTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhc----CCCEEEEEE
Confidence 3567888999999999888888888866778888999999999999988888765433 255666665
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.58 E-value=2.1 Score=26.99 Aligned_cols=68 Identities=12% Similarity=0.210 Sum_probs=45.7
Q ss_pred cEEEcCC-CCCCCHHHHHHHHhcCC-----CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEec
Q 024366 4 PIFVGNF-EYETRQSELERLFSKYG-----RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWAR 74 (268)
Q Consensus 4 tl~V~nL-p~~~t~~~l~~~F~~~G-----~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~ 74 (268)
||+|..- -..++..+|..++..-+ .|-.|.|...|.||+.... .|..+++.|++..+. |+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~--g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVK--GKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC-----CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCc--CceEEEEECC
Confidence 5666432 24578888888887654 3567888999999999765 577788889988876 8888887653
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=87.92 E-value=0.94 Score=28.66 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhhccCC-----CeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEee
Q 024366 104 IRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 164 (268)
Q Consensus 104 ~~~~~~~l~~~f~~~g-----~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~ 164 (268)
..+...+|..++..-+ .|-.|.|...+.||+-.. ..|..+++.|++..+.|+.+.++.+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4456667777766544 456788899999999864 45778888899999999999887764
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.54 E-value=0.54 Score=34.32 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCeeEEEeeCCEEEEEEc
Q 024366 16 QSELERLFSKYGRIERVDMKSGFAFVYFE 44 (268)
Q Consensus 16 ~~~l~~~F~~~G~v~~i~i~~g~afV~f~ 44 (268)
++|+.++|...|.|+.+...+||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeC
Confidence 35677888999999999999999999876
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=62.69 E-value=10 Score=28.16 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=32.7
Q ss_pred cEEEcCCCC-C--------CCHHHHHHHH--hcCCCeeEEEe-----eCCEEEEEEcCHH
Q 024366 4 PIFVGNFEY-E--------TRQSELERLF--SKYGRIERVDM-----KSGFAFVYFEDDR 47 (268)
Q Consensus 4 tl~V~nLp~-~--------~t~~~l~~~F--~~~G~v~~i~i-----~~g~afV~f~~~~ 47 (268)
++.|-|+|. . ....+|.+.| ..|.+++-..+ +.|+|.|+|..--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 467889887 2 3457899977 99998875555 5679999998543
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=62.38 E-value=2 Score=31.28 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=35.4
Q ss_pred HHHHHhhccCCCeEEEEEeCCeEEEEecc--------HHHHHHHHHhhC--C--CccCCcEEEEEEeecCC
Q 024366 109 RDIKRHFEPYGNVLHVRIRRNFAFVQFET--------QEEATKALESTD--R--SKLVDRVISVEYALKDD 167 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i~~~~afV~f~~--------~~~a~~A~~~l~--g--~~~~g~~i~v~~a~~~~ 167 (268)
+|+.++|...|.|+.....+||+||+..+ .+++---+..|. + ..-.|..|..++.....
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~k 72 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAK 72 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETT
T ss_pred CcccccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEccc
Confidence 56778899999999999999999999762 122211122222 2 22357788777766543
No 410
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=58.96 E-value=23 Score=20.19 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=37.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC---HHHHHHHHH
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED---DRDAADAIR 54 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~---~~~a~~a~~ 54 (268)
|..++.|.|+.-..-...|++.+.....|..+.+ ..+.+.|+|.. .+....+++
T Consensus 1 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 59 (66)
T 1yg0_A 1 MKATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL 59 (66)
T ss_dssp CEEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred CeEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHH
Confidence 3446777777655557788899988877877766 56888888863 344444444
No 411
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.91 E-value=5.8 Score=24.21 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=16.9
Q ss_pred CCCeeEEEeeCCEEEEEEcCH
Q 024366 26 YGRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~~ 46 (268)
.|+|+.|...+..|||.|.+.
T Consensus 27 lGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETTTTEEEEEETTT
T ss_pred EeEEEEEecCCcEEEEEEccC
Confidence 367777777789999999765
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=55.66 E-value=27 Score=20.96 Aligned_cols=51 Identities=6% Similarity=0.024 Sum_probs=37.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~ 54 (268)
.+|.|.++.=.--...|++.+.. ..|..+.+ ..+.+.|+|.+.+....+++
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHH
Confidence 46788888776678889999998 77887777 45677788875555555655
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=54.78 E-value=41 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=23.3
Q ss_pred CeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCC
Q 024366 28 RIERVDM---KSGFAFVYFEDDRDAADAIRGLDN 58 (268)
Q Consensus 28 ~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~ 58 (268)
+|..+.+ -+||.||++...+++..++..+.|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 3667776 489999999998887777754443
No 414
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=51.65 E-value=7.7 Score=24.37 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=17.3
Q ss_pred CCCeeEEEeeCCEEEEEEcCH
Q 024366 26 YGRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~~ 46 (268)
.|+|..|...+..|||.|.+.
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEeccCCCEEEEEEcCC
Confidence 377888887899999999864
No 415
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=51.41 E-value=7.9 Score=23.67 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=15.7
Q ss_pred CCeeEEEeeCCEEEEEEcCH
Q 024366 27 GRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~ 46 (268)
|.|..|.-..+.|+|.|.+.
T Consensus 32 gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEccCCcEEEEEEccC
Confidence 56777766789999999764
No 416
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=51.07 E-value=35 Score=19.93 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=33.1
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCH
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDD 46 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~ 46 (268)
++.|.|+.-.--...|.+.+.....|..+.+ ..+.+.|+|...
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~ 49 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE 49 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTT
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCC
Confidence 5677787766667889999999877877766 578889998543
No 417
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=47.15 E-value=61 Score=25.25 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=45.3
Q ss_pred ccEEEcCCCCCCC--HHHHHHHHhc-----CCCe---eEEEe---------------eCCEEEEEEcCHHHHHHHHHhcC
Q 024366 3 RPIFVGNFEYETR--QSELERLFSK-----YGRI---ERVDM---------------KSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 3 ~tl~V~nLp~~~t--~~~l~~~F~~-----~G~v---~~i~i---------------~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
+.|.|-|||.... +..+..+|.. |..+ .++.| ......|.|....+-++.|.+..
T Consensus 53 ~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaaR 132 (233)
T 2yko_A 53 PNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 132 (233)
T ss_dssp TEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHHH
T ss_pred cceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5799999999876 5556666653 4433 22222 13567888988887777776654
Q ss_pred CC-CccCCCceEEEEE
Q 024366 58 NI-PFGYDRRRLSVEW 72 (268)
Q Consensus 58 ~~-~~~~~g~~i~v~~ 72 (268)
.. .+.+.|.+|.+..
T Consensus 133 ~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 133 EKGRVTLKGKPIRLTV 148 (233)
T ss_dssp TTSCEEETTEEEEEEE
T ss_pred HhcccccCCCceEEeC
Confidence 44 4444588887764
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.16 E-value=37 Score=25.15 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=30.3
Q ss_pred cEEEEEccCCC---------CCCHHHHHHhh--ccCCCeEEEEE-----eCCeEEEEeccH
Q 024366 94 KTLFVINFDPI---------RTRERDIKRHF--EPYGNVLHVRI-----RRNFAFVQFETQ 138 (268)
Q Consensus 94 ~~l~v~~l~~~---------~~~~~~l~~~f--~~~g~v~~~~i-----~~~~afV~f~~~ 138 (268)
..++|.|+ +. .....+|.+.| ..|.++....+ ..|+|.|+|..-
T Consensus 13 wmgIl~N~-~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNI-PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECC-CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred CEEEEEec-cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 35566676 33 23457899977 89988766555 456899999653
No 419
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=44.69 E-value=95 Score=23.11 Aligned_cols=127 Identities=10% Similarity=0.108 Sum_probs=66.3
Q ss_pred EEEcCCC----CCCCHHHHHHHHhcCCCeeEEE--eeCCEEEEEEc-CHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 5 IFVGNFE----YETRQSELERLFSKYGRIERVD--MKSGFAFVYFE-DDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 5 l~V~nLp----~~~t~~~l~~~F~~~G~v~~i~--i~~g~afV~f~-~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
+++.+|. ..+.-.+|+++|+..| ..+|+ |..|-.+.+=. +.+.....++.+-...|+++ ..+.|--...-.
T Consensus 9 aLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~SGNvvF~s~~~~~~l~~~ie~~l~~~fg~~-v~v~vrs~~el~ 86 (183)
T 2hiy_A 9 LLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHYPFI-QSFSLLSLEDFE 86 (183)
T ss_dssp EECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETTTTEEEEEECSCHHHHHHHHHHHHHHHCTTC-CCCEEEEHHHHH
T ss_pred hhccceecCCCCcccHHHHHHHHHHcC-CccceEEEecCCEEEecCCCHHHHHHHHHHHHHHhcCCC-CCEEEecHHHHH
Confidence 4566663 4588999999999987 44443 35666555433 32333334433332333221 222222211100
Q ss_pred CcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccC-CCeEEEEEeCCeEEE-Eec
Q 024366 78 GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPY-GNVLHVRIRRNFAFV-QFE 136 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~-g~v~~~~i~~~~afV-~f~ 136 (268)
..-.. .+-.... ....++|.-+ ...+..+++.+.+... ...+.+.+..+..|+ .|.
T Consensus 87 ~i~~~-~Pf~~~~-~~~~~~v~F~-~~~~~~~~~~~~l~~~~~~~E~~~~~~~~iy~~~~~ 144 (183)
T 2hiy_A 87 AELEN-LPAWWSR-DLARKDFLFY-TEGLDVDQVIATVESLELKDEVLYFGKLGIFWGKFS 144 (183)
T ss_dssp HHHTT-CCGGGGS-CCSEEEEEEE-CTTCCHHHHHHHHHTSCCCSEEEEECSSEEEEEECC
T ss_pred HHHHh-CCCCccC-CCcEEEEEEE-CCCCChHHHHHHhhccCCCCeEEEEECCEEEEEEeC
Confidence 00000 0000011 3567777777 5667777766655433 355778888888888 773
No 420
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=44.09 E-value=45 Score=19.26 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=36.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEc---CHHHHHHHHH
Q 024366 2 SRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFE---DDRDAADAIR 54 (268)
Q Consensus 2 s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~---~~~~a~~a~~ 54 (268)
..+|.|.++.-..-...|.+.+.....|..+.+ ..+.+.|+|. +.+....+++
T Consensus 3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (72)
T 1fvq_A 3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIE 60 (72)
T ss_dssp EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 346778887655556778888888877877776 5678888886 2333444554
No 421
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.80 E-value=4.7 Score=24.19 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=14.7
Q ss_pred CCeeEEEeeCCEEEEEEcCH
Q 024366 27 GRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~ 46 (268)
|+|+.|...+..|||.|.+.
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 55655555688999999764
No 422
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=41.28 E-value=15 Score=21.79 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=15.9
Q ss_pred CCeeEEEeeCCEEEEEEcCH
Q 024366 27 GRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~ 46 (268)
|+|..|...+..++|.|.+.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 67777776778999999764
No 423
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=40.64 E-value=72 Score=21.24 Aligned_cols=69 Identities=9% Similarity=0.140 Sum_probs=40.8
Q ss_pred ccEEEcCCCCCCCHHH--HHHHHhc-----C---C-----CeeEEEe----------eCCEEEEEEcCHHHHHHHHHhcC
Q 024366 3 RPIFVGNFEYETRQSE--LERLFSK-----Y---G-----RIERVDM----------KSGFAFVYFEDDRDAADAIRGLD 57 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~--l~~~F~~-----~---G-----~v~~i~i----------~~g~afV~f~~~~~a~~a~~~l~ 57 (268)
+.|.|-+||....+.. +..+|.. | + .|..+.- ......|.|....+-++.|.+..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5799999998744333 5555543 3 2 1333322 13577888888777666665543
Q ss_pred CC-CccCCCceEEEE
Q 024366 58 NI-PFGYDRRRLSVE 71 (268)
Q Consensus 58 ~~-~~~~~g~~i~v~ 71 (268)
.. .+.+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 33 243458888775
No 424
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=39.62 E-value=26 Score=20.38 Aligned_cols=53 Identities=8% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcCHHHHHHHHH
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~~~~a~~a~~ 54 (268)
|..++.|.|+.-..-...|.+.+... .|..+.+ ..+.+.|.|...+....+++
T Consensus 1 m~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 1 MRYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp CEEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHH
T ss_pred CeEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 44567777765444456788888777 6766655 57888888875533334443
No 425
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=39.18 E-value=52 Score=20.69 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=36.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC----HHHHHHHHHh
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED----DRDAADAIRG 55 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~----~~~a~~a~~~ 55 (268)
.+|.|.++.-..-...|.+.+.....|..+.+ ..+.+.|.|.. .+....+++.
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~ 63 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEA 63 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHh
Confidence 35677777655556778999988877877766 67889999853 3445555553
No 426
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=38.27 E-value=62 Score=19.12 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=38.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEc----CHHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFE----DDRDAADAIR 54 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~----~~~~a~~a~~ 54 (268)
.+|.|.|+.-.--...|++.+.....|..+.+ ..+.+.|+|. +.+....+++
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~ 61 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIE 61 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH
Confidence 35778888766667889999998877877666 6788999995 3445555554
No 427
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=38.08 E-value=12 Score=18.85 Aligned_cols=16 Identities=44% Similarity=0.684 Sum_probs=9.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHH
Q 024366 3 RPIFVGNFEYETRQSELERLF 23 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F 23 (268)
+|||||+- .++|+++-
T Consensus 6 rtiwvggt-----peelkklk 21 (36)
T 2ki0_A 6 RTIWVGGT-----PEELKKLK 21 (36)
T ss_dssp CCCCBCCC-----HHHHHHHH
T ss_pred EEEEecCC-----HHHHHHHH
Confidence 57788764 45665553
No 428
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.13 E-value=56 Score=21.09 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=35.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEe---eCC--EEEEEEcCHHHHHHHHH
Q 024366 5 IFVGNFEYETRQSELERLFSK-YG-RIERVDM---KSG--FAFVYFEDDRDAADAIR 54 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~-~G-~v~~i~i---~~g--~afV~f~~~~~a~~a~~ 54 (268)
-|+-.+...+|..+|++.++. || +|..|.. +.| -|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 456677889999999998887 44 4444443 344 59999998888776543
No 429
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=35.86 E-value=15 Score=23.02 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=15.4
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
.|.|+.....+||+||+-.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36677777789999998764
No 430
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.17 E-value=1e+02 Score=20.47 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=47.3
Q ss_pred cCCCCCCCHHHHHHHHh-cCCCeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEecc
Q 024366 8 GNFEYETRQSELERLFS-KYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARG 75 (268)
Q Consensus 8 ~nLp~~~t~~~l~~~F~-~~G~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~ 75 (268)
-.++.-++-++|..-.. .||.-.++.....-..|-..+.++-.+|++.|+-... -+.|+|-...+
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss~---~kSLrIlL~~~ 87 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIH---MKSLKILLVIN 87 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCSS---CCSEEEEEEEC
T ss_pred EeccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCCc---ccceEEEEecC
Confidence 34566777778776554 5888888887778889999999999999998876643 34455544443
No 431
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=33.63 E-value=17 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=15.3
Q ss_pred CCeeEEEeeCCEEEEEEcCH
Q 024366 27 GRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~ 46 (268)
|.|+.....+||+||+-.+-
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 56776666899999987653
No 432
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=32.76 E-value=36 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCHHHHHHHHhcCCCeeEEEeeCCEEEE
Q 024366 14 TRQSELERLFSKYGRIERVDMKSGFAFV 41 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i~i~~g~afV 41 (268)
.+++.|.++|+.+|+|..-.+--|+||.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l~ 31 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGLF 31 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEEE
Confidence 4678899999999999988775555543
No 433
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=32.41 E-value=19 Score=21.89 Aligned_cols=19 Identities=21% Similarity=0.646 Sum_probs=14.8
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+...-.+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEECCCCeEEEecCC
Confidence 6677777789999998654
No 434
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=32.23 E-value=19 Score=21.99 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=14.7
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+.....+||+||+=.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6677777789999998654
No 435
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.19 E-value=52 Score=22.17 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=25.4
Q ss_pred CeeEEEe---eCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 28 RIERVDM---KSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 28 ~v~~i~i---~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
.|..+.. -+||.|||=.++.++..|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4667766 4899999999999999998765544
No 436
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.94 E-value=43 Score=26.76 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=22.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCee
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIE 30 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~ 30 (268)
.+.|+|||.+++..-|.+++.. +.+.
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCC
Confidence 4689999999999999999987 5554
No 437
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=30.74 E-value=20 Score=22.25 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=14.7
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+...-.+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 6677777789999998654
No 438
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.78 E-value=22 Score=21.57 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=14.6
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+...-.+||+||+-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5666666689999998654
No 439
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.94 E-value=1.5e+02 Score=20.60 Aligned_cols=116 Identities=9% Similarity=0.164 Sum_probs=59.7
Q ss_pred cEEEcCCCCC-CCHHHHHHHHhcCC-CeeEEEe--eCCEEE--EEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCC
Q 024366 4 PIFVGNFEYE-TRQSELERLFSKYG-RIERVDM--KSGFAF--VYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGER 77 (268)
Q Consensus 4 tl~V~nLp~~-~t~~~l~~~F~~~G-~v~~i~i--~~g~af--V~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~ 77 (268)
.|.| .+|.. -...+|..+|...| .|..+.+ ...+++ +.+.+.+.|.++++.+ |... ...
T Consensus 8 ~i~v-~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~a~~~L~~~-G~~v-------~~~------ 72 (144)
T 2f06_A 8 QLSI-FLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN-HFAV-------NIT------ 72 (144)
T ss_dssp EEEE-EECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT-TCCE-------EEE------
T ss_pred EEEE-EecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHHHHHHHHHc-CCeE-------eee------
Confidence 4555 33332 23566777887776 5666654 333333 3356677777776642 2211 000
Q ss_pred CcCCCCCCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhccCC-CeEEEEE--eC--CeEEEEeccHHHHHHHHHhhCCCc
Q 024366 78 GRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI--RR--NFAFVQFETQEEATKALESTDRSK 152 (268)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~~~g-~v~~~~i--~~--~~afV~f~~~~~a~~A~~~l~g~~ 152 (268)
.++.-.++...-.-..+-+.+...| .|..+.. .. ..+.+.+++.+.|.++++. .|.+
T Consensus 73 -----------------svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~ 134 (144)
T 2f06_A 73 -----------------DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVD 134 (144)
T ss_dssp -----------------EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCE
T ss_pred -----------------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCE
Confidence 1111122111112355666666666 5544333 23 3455678888888888876 4544
No 440
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=28.62 E-value=1.2e+02 Score=19.97 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 103 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 103 ~~~~~~~~l~~~f~-~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
+-.+.-++|++-.. .||.-.++.+..+.-.|-..+.++..+|++.|+
T Consensus 37 ~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 37 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp CSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhc
Confidence 45566777766654 688888888888888899999999999999875
No 441
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=27.64 E-value=73 Score=20.73 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=10.4
Q ss_pred EEEcC-C-CC-CCCHHHHHHHHh
Q 024366 5 IFVGN-F-EY-ETRQSELERLFS 24 (268)
Q Consensus 5 l~V~n-L-p~-~~t~~~l~~~F~ 24 (268)
|||.| + |. +.+-.+|.+.|.
T Consensus 53 lyVnn~~~P~~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 53 IYVNQSFAPSPDQEVGTLYECFG 75 (91)
T ss_dssp EEETTTBCCCTTCBHHHHHHHHC
T ss_pred EEECCccCCChhhHHHHHHHHhC
Confidence 56655 2 32 455555555554
No 442
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=27.40 E-value=36 Score=15.79 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCC
Q 024366 16 QSELERLFSKYG 27 (268)
Q Consensus 16 ~~~l~~~F~~~G 27 (268)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 567889999887
No 443
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=26.91 E-value=26 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.683 Sum_probs=12.6
Q ss_pred CCeeEEEeeCCEEEEEE
Q 024366 27 GRIERVDMKSGFAFVYF 43 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f 43 (268)
|.|+...-.+||+||+-
T Consensus 11 G~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEeeCCCCeEEeEe
Confidence 56665555899999964
No 444
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.85 E-value=26 Score=22.16 Aligned_cols=19 Identities=21% Similarity=0.700 Sum_probs=14.4
Q ss_pred CCeeEEEeeCCEEEEEEcC
Q 024366 27 GRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~ 45 (268)
|.|+...-.+||+||+=.+
T Consensus 11 G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEETTTTEEEEEEGG
T ss_pred eEEEEEECCCCcEEEecCC
Confidence 6666666689999998644
No 445
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=26.84 E-value=86 Score=17.28 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=33.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEc-CHHHHHHHHH
Q 024366 1 MSRPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFE-DDRDAADAIR 54 (268)
Q Consensus 1 ~s~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~-~~~~a~~a~~ 54 (268)
|..++.|.++.-..-...|.+.+.....|..+.+ ..+.+.|+.. +.+....+++
T Consensus 1 m~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~ 57 (64)
T 2xmm_A 1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA 57 (64)
T ss_dssp -CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHH
T ss_pred CeEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHH
Confidence 4556777777655456778888887766766666 4567777643 2334444544
No 446
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.71 E-value=42 Score=30.63 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHh----cCCCeeEEEe-------eCCEEEEEEcCHHHHHHHHHhcCCC
Q 024366 10 FEYETRQSELERLFS----KYGRIERVDM-------KSGFAFVYFEDDRDAADAIRGLDNI 59 (268)
Q Consensus 10 Lp~~~t~~~l~~~F~----~~G~v~~i~i-------~~g~afV~f~~~~~a~~a~~~l~~~ 59 (268)
.+.+.+=-||.++|- .+|.|+.+.| ...+++|.|.+.++|..++..+...
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~ 411 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQ 411 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHc
Confidence 445555557888883 6899988877 2457889999999999988776433
No 447
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=26.69 E-value=1.4e+02 Score=19.78 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhCCCccCCcEEEEEEeecC
Q 024366 103 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 166 (268)
Q Consensus 103 ~~~~~~~~l~~~f~-~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~i~v~~a~~~ 166 (268)
+-.+.-++|..-.. .||.-.++.+......|-..+.+|..+||+.|+-. ..-+.++|-...++
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 44566677766554 68888888888888899999999999999988633 23334444444333
No 448
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=26.54 E-value=1.6e+02 Score=20.35 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=56.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC-CeeEEEeeCCEEEEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEeccCCCcCCCC
Q 024366 5 IFVGNFEYETRQSELERLFSKYG-RIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWARGERGRHRDG 83 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G-~v~~i~i~~g~afV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~ 83 (268)
.+|-..|++..-.-|-..+...| +|++..-++|.-||.|..++. -....|-+...........|.....
T Consensus 16 ~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~--gf~~~lg~~~~~~~~~~Y~i~v~~~-------- 85 (127)
T 2yh5_A 16 MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD--SDWQELGASDPGLASGDYKLQVGDL-------- 85 (127)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH--HHHHHHTSCCCCCCSEEEEEEEEEE--------
T ss_pred EEEEcCCHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc--chHHHhcCCCccCCCCCEEEEEEeC--------
Confidence 44555666667777888888888 777887799999999998874 3434443222211223333333221
Q ss_pred CCCcCCCCCCcEEEEEccCCCCCCHHHHHHhhc
Q 024366 84 SKSMANQRPTKTLFVINFDPIRTRERDIKRHFE 116 (268)
Q Consensus 84 ~~~~~~~~~~~~l~v~~l~~~~~~~~~l~~~f~ 116 (268)
.....|.|.+-.....+.++.+.++.
T Consensus 86 -------g~~t~V~v~d~~G~p~~~~~a~~ll~ 111 (127)
T 2yh5_A 86 -------DNRSSLQFIDPKGHTLTQSQNDALVA 111 (127)
T ss_dssp -------TTEEEEEEECTTSCBCCHHHHHHHHH
T ss_pred -------CCceEEEEECCCCCCCCHHHHHHHHH
Confidence 12456777776444556666665544
No 449
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=26.39 E-value=1.3e+02 Score=19.52 Aligned_cols=20 Identities=20% Similarity=0.239 Sum_probs=10.7
Q ss_pred EEEcC--CCC-CCCHHHHHHHHh
Q 024366 5 IFVGN--FEY-ETRQSELERLFS 24 (268)
Q Consensus 5 l~V~n--Lp~-~~t~~~l~~~F~ 24 (268)
|||.| +|. +.+-.+|.+.|.
T Consensus 53 lyVNn~f~Ps~d~~~~~Ly~~fk 75 (91)
T 3w1s_C 53 CYINNSFAPSPQQNIGELWMQFK 75 (91)
T ss_dssp EEETTTBCCCTTSBHHHHHHHHC
T ss_pred EEECCccCCCcccHHHHHHHHhC
Confidence 56665 232 455566665555
No 450
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=25.99 E-value=84 Score=20.73 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHhcC--------CCeeEEEe-------------eC-CEEEEEEcCHHHHHHHHH
Q 024366 10 FEYETRQSELERLFSKY--------GRIERVDM-------------KS-GFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 10 Lp~~~t~~~l~~~F~~~--------G~v~~i~i-------------~~-g~afV~f~~~~~a~~a~~ 54 (268)
|.++++++++..+...| |.|..+.- .+ .|.++.|.....+.+-++
T Consensus 10 l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 10 LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 36777888887766554 45655543 12 488888987766666554
No 451
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=25.91 E-value=1.2e+02 Score=20.27 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEEeCCeEEEEeccHHHHHHHHHhhC
Q 024366 103 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTD 149 (268)
Q Consensus 103 ~~~~~~~~l~~~f~-~~g~v~~~~i~~~~afV~f~~~~~a~~A~~~l~ 149 (268)
+-.+.-++|++-.. .||.-.++.+..+.-.|-..+.++..+|++.|+
T Consensus 48 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLD 95 (111)
T 2c60_A 48 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILD 95 (111)
T ss_dssp CSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhc
Confidence 45566677766554 688888888888888889999999999999875
No 452
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.79 E-value=28 Score=21.44 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.8
Q ss_pred cCCCeeEEEeeCCEEEEEEcC
Q 024366 25 KYGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 25 ~~G~v~~i~i~~g~afV~f~~ 45 (268)
..|.|+...-.+||+||+-.+
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEECCCCcEEEecCC
Confidence 347777777789999998654
No 453
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.72 E-value=24 Score=28.40 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=22.7
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIER 31 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~ 31 (268)
.+.|+|||++++..-|.+++.....+..
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~ 143 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVID 143 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccE
Confidence 4689999999999999999986544443
No 454
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=25.28 E-value=99 Score=17.48 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=31.1
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED 45 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~ 45 (268)
++.|.++.-..-...|...+.....|..+.+ ..+.+.|.|..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 49 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHG 49 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC-
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECC
Confidence 4677777655556778899988877877776 56888888864
No 455
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=24.91 E-value=27 Score=22.65 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCHHHHHHHHhcCCCeeEEEe-----eCCEE--EEEEcCHHHHHHHHHhcCCCCccCCCceEEEEEe
Q 024366 14 TRQSELERLFSKYGRIERVDM-----KSGFA--FVYFEDDRDAADAIRGLDNIPFGYDRRRLSVEWA 73 (268)
Q Consensus 14 ~t~~~l~~~F~~~G~v~~i~i-----~~g~a--fV~f~~~~~a~~a~~~l~~~~~~~~g~~i~v~~~ 73 (268)
..+.++.+++..||.+.-.+| .++.+ .+.+....+...||. |+.=.+.|..++.-+.
T Consensus 19 ~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~---gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 19 KAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALS---GKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHH---HHHHTSTTEEEEEEEC
T ss_pred hhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHH---HHhCCCCCEEEEEEEe
Confidence 345589999999999888887 35544 445555555555543 2221223555554443
No 456
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=24.15 E-value=1.1e+02 Score=17.64 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=33.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED 45 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~ 45 (268)
.++.|.++.-..-...|.+.+.....|..+.+ ..+.+.|.|..
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~ 49 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADN 49 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESS
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECC
Confidence 35778888766667789999988877877766 56888888875
No 457
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.01 E-value=49 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=17.5
Q ss_pred cCCCCCCCHHHHHHHHhcCC
Q 024366 8 GNFEYETRQSELERLFSKYG 27 (268)
Q Consensus 8 ~nLp~~~t~~~l~~~F~~~G 27 (268)
|.|+..+|+++|++++.+..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999998863
No 458
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=23.96 E-value=39 Score=20.73 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=13.0
Q ss_pred CCeeEEEeeCCEEEEEEcCH
Q 024366 27 GRIERVDMKSGFAFVYFEDD 46 (268)
Q Consensus 27 G~v~~i~i~~g~afV~f~~~ 46 (268)
|+| |...+..|||.|.+.
T Consensus 34 GtI--Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE--EEECSSCEEEEETTC
T ss_pred EEE--EecCCceEEEEecCC
Confidence 555 445788999999764
No 459
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.80 E-value=54 Score=17.35 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHhcC
Q 024366 12 YETRQSELERLFSKY 26 (268)
Q Consensus 12 ~~~t~~~l~~~F~~~ 26 (268)
..+|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 457999999999875
No 460
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.59 E-value=63 Score=22.79 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=20.9
Q ss_pred EcCCCCCCCHHHHHHHHh-cCC--CeeEEEe
Q 024366 7 VGNFEYETRQSELERLFS-KYG--RIERVDM 34 (268)
Q Consensus 7 V~nLp~~~t~~~l~~~F~-~~G--~v~~i~i 34 (268)
|-.+...++++++.+++. .++ +|..+.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEee
Confidence 667778899999999995 444 5566655
No 461
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=22.86 E-value=2.1e+02 Score=20.29 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=28.6
Q ss_pred HHHHHhhccCCCeEEEEE-----eCC------------------eEEEEeccHHHHHHHHHh
Q 024366 109 RDIKRHFEPYGNVLHVRI-----RRN------------------FAFVQFETQEEATKALES 147 (268)
Q Consensus 109 ~~l~~~f~~~g~v~~~~i-----~~~------------------~afV~f~~~~~a~~A~~~ 147 (268)
+..-++|..||.+..+.. +.| |.+|+|.+.+...++.++
T Consensus 48 ~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 48 AKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 344578999998877665 221 899999998888777654
No 462
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=22.71 E-value=1.1e+02 Score=17.28 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=34.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC----HHHHHHHHHh
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED----DRDAADAIRG 55 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~----~~~a~~a~~~ 55 (268)
++.|.++.-..-...|...+.....|..+.+ ..+.+.|.|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHH
Confidence 4667777544445678888888766766555 67888898863 3344455543
No 463
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=22.62 E-value=39 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=15.8
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
.|.|+.....+||+||+-.+
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 47777777789999998765
No 464
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.49 E-value=98 Score=26.42 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=35.0
Q ss_pred EEcCCCCCC----CHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHH
Q 024366 6 FVGNFEYET----RQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 6 ~V~nLp~~~----t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~ 54 (268)
+||||..-. ....+.++..+||+|..+++- +.-+|...+++.|..++.
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHHT
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHHH
Confidence 678876432 235677888899999888873 345677789999888874
No 465
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=22.33 E-value=1.2e+02 Score=17.23 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=35.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC----HHHHHHHHH
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED----DRDAADAIR 54 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~----~~~a~~a~~ 54 (268)
+|.|.++.-..-...|...+.....|..+.+ ..+.+.|.|.. .+....+++
T Consensus 8 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~ 64 (71)
T 2l3m_A 8 TLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIE 64 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHH
Confidence 5778777655456778888888877877766 56888888863 334444454
No 466
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=22.31 E-value=1.2e+02 Score=17.16 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=33.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED 45 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~ 45 (268)
.++.|.++.-..-...|++.+.....|..+.+ ..+.+.|.|..
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVP 46 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECC
Confidence 46788888766567888999988877877776 56788888864
No 467
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.16 E-value=62 Score=27.46 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=31.0
Q ss_pred EcCCCC---CCCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHH
Q 024366 7 VGNFEY---ETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAI 53 (268)
Q Consensus 7 V~nLp~---~~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~ 53 (268)
||||.. .-....+.++.++||+|..+++- +.-+|...+++.+..++
T Consensus 21 iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl 69 (479)
T 3tbg_A 21 LGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREAL 69 (479)
T ss_dssp TBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred ccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHH
Confidence 566542 22345677888999999888873 23345567888887776
No 468
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=21.99 E-value=1.1e+02 Score=16.99 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=32.8
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED 45 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~ 45 (268)
++.|.++.-..-...|.+.+.....|..+.+ ..+.+.|+|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDE 46 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECC
Confidence 5788888766667789999998877877766 56888898863
No 469
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=21.39 E-value=89 Score=26.42 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=34.6
Q ss_pred EcCCCCC---CCHHHHHHHHhcCCCeeEEEeeCCEEEEEEcCHHHHHHHHH
Q 024366 7 VGNFEYE---TRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIR 54 (268)
Q Consensus 7 V~nLp~~---~t~~~l~~~F~~~G~v~~i~i~~g~afV~f~~~~~a~~a~~ 54 (268)
|||+..- -....+.++.++||+|..+.+- +.-+|.+.+++.+..++.
T Consensus 21 iG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 21 IGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG-SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp TBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET-TEEEEEECSHHHHHHHHH
T ss_pred ccChhhhccccHhHHHHHHHHHhCCEEEEEEC-CccEEEECCHHHHHHHHh
Confidence 5666432 2245678888999999888763 456788899999999885
No 470
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.39 E-value=45 Score=22.03 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=15.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcC
Q 024366 4 PIFVGNFEYETRQSELERLFSKY 26 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~ 26 (268)
++|| |.++++++++..+.+.|
T Consensus 48 ~m~I--l~P~l~ee~~~~~ve~~ 68 (96)
T 2kjw_A 48 VNIV--LNPNLDQSQLALEKEII 68 (96)
T ss_dssp EEEE--CCSSCCHHHHHHHHHHH
T ss_pred eeee--eCCCCCHHHHHHHHHHH
Confidence 3444 77888888888777654
No 471
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=21.28 E-value=1.3e+02 Score=17.50 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=36.5
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC----HHHHHHHHHh
Q 024366 4 PIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED----DRDAADAIRG 55 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~----~~~a~~a~~~ 55 (268)
+|.|.++.-..-...|.+.+.....|..+.+ ..+.+.|.|.. .+....+++.
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRE 63 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678887666667789999998877877666 56788888863 3344455543
No 472
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=21.16 E-value=1.5e+02 Score=17.90 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEcC----HHHHHHHHHh
Q 024366 3 RPIFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFED----DRDAADAIRG 55 (268)
Q Consensus 3 ~tl~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~~----~~~a~~a~~~ 55 (268)
.+|.|.++.-..-...|.+.+.....|..+.+ ..+.+.|+|.. .+....+++.
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888766666779999998888887777 56888899853 3444555543
No 473
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.54 E-value=65 Score=25.26 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=19.8
Q ss_pred cEEEcCCCCCCCHHHHHHHHhcC
Q 024366 4 PIFVGNFEYETRQSELERLFSKY 26 (268)
Q Consensus 4 tl~V~nLp~~~t~~~l~~~F~~~ 26 (268)
.+.|+|||+.++..-|.+++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 47899999999999999988754
No 474
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=20.24 E-value=62 Score=20.63 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=16.5
Q ss_pred cCCCCCCCHHHHHHHHhcC
Q 024366 8 GNFEYETRQSELERLFSKY 26 (268)
Q Consensus 8 ~nLp~~~t~~~l~~~F~~~ 26 (268)
|.|+..+|+++|++++.+.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999999875
No 475
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=20.19 E-value=1.9e+02 Score=19.52 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEe--eCCEEEEEEc
Q 024366 5 IFVGNFEYETRQSELERLFSKYGRIERVDM--KSGFAFVYFE 44 (268)
Q Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~v~~i~i--~~g~afV~f~ 44 (268)
|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|.
T Consensus 84 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~ 125 (149)
T 2ew9_A 84 LTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFD 125 (149)
T ss_dssp EEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECC
T ss_pred EEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEEC
Confidence 444444433334445555555544544444 3455666654
No 476
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=25.30 E-value=22 Score=21.86 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=15.2
Q ss_pred CCCeeEEEeeCCEEEEEEcC
Q 024366 26 YGRIERVDMKSGFAFVYFED 45 (268)
Q Consensus 26 ~G~v~~i~i~~g~afV~f~~ 45 (268)
-|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 6 VGKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 37777777789999997544
Done!