BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024367
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 21 SLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGC 78
S+ +A+VT D Y KG + L L++ ++ L+V P V + RK+L +
Sbjct: 22 SMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 80
Query: 79 ILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLP 138
I+ ++ + T + +KL W +YSK +++D D V NID LFD
Sbjct: 81 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 140
Query: 139 DGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLS 198
+ PD WP FN+G+FV++PS+
Sbjct: 141 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 166
Query: 199 TYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRH--PENVE 251
TY+ LL +Q LN +F DI + +P IYNL ++ + V
Sbjct: 167 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 226
Query: 252 ADKAKVVHYCAAV 264
AKVVH+ V
Sbjct: 227 GASAKVVHFLGRV 239
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 21 SLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGC 78
S+ +A+VT D Y KG + L L++ ++ L+V P V + RK+L +
Sbjct: 1 SMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 79 ILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLP 138
I+ ++ + T + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 139 DGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLS 198
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 199 TYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRH--PENVE 251
TY+ LL +Q LN +F DI + +P IYNL ++ + V
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205
Query: 252 ADKAKVVHYCAAV 264
AKVVH+ V
Sbjct: 206 GASAKVVHFLGRV 218
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 21 SLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGC 78
S+ +A+VT D Y KG + L L++ ++ L+V P V + RK+L +
Sbjct: 1 SMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 79 ILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLP 138
I+ ++ + T + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 139 DGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLS 198
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 199 TYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRH--PENVE 251
TY+ LL +Q LN +F DI + +P IYNL ++ + V
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPAFKVF 205
Query: 252 ADKAKVVHYCAAV 264
AKVVH+ V
Sbjct: 206 GASAKVVHFLGRV 218
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 44/253 (17%)
Query: 21 SLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGC 78
S+ +A+VT D Y KG + L L++ ++ L+V P V + RK+L +
Sbjct: 1 SMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59
Query: 79 ILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLP 138
I+ ++ + T + +KL W +YSK +++D D V NID LFD
Sbjct: 60 IMVDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119
Query: 139 DGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLS 198
+ PD WP FN+G+FV++PS+
Sbjct: 120 E-------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVE 145
Query: 199 TYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRH--PENVE 251
TY+ LL +Q LN +F DI + +P IYNL ++ + V
Sbjct: 146 TYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVF 205
Query: 252 ADKAKVVHYCAAV 264
AKVVH+ V
Sbjct: 206 GASAKVVHFLGRV 218
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL S +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL S +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL + +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 3 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 61
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 62 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 121
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 122 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 147
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL +Q LN +F DI + +P IYNL ++ +
Sbjct: 148 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 207
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 208 KAFGANAKVVHFLG 221
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 44/254 (17%)
Query: 18 KAPSLPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IE 75
+ + +A+VT D Y KG + L L++ ++ L V P V + RK L +
Sbjct: 17 RGSHMTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVF 75
Query: 76 QGCILREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLF 135
I +I + T + +KL W +YSK +++D D V NID LF
Sbjct: 76 DEVITVDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 136 DLPDGYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEP 195
+ + PD WP FN+G+FV++P
Sbjct: 136 EREE-------------------------LSAAPDP-GWPD--------CFNSGVFVYQP 161
Query: 196 SLSTYHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENV 250
S+ TY+ LL +Q LN +F DI + +P IYNL ++ +
Sbjct: 162 SVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAF 221
Query: 251 EA--DKAKVVHYCA 262
+A AKVVH+
Sbjct: 222 KAFGANAKVVHFLG 235
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 44/250 (17%)
Query: 22 LPKRAYVTFLAGDGDYWKGVVGLVKGLRKAKSKYPLLVAMLPDVPEEHRKIL--IEQGCI 79
+ +A+VT D Y KG + L L++ ++ L V P V + RK L + I
Sbjct: 1 MTDQAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVI 59
Query: 80 LREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPD 139
+I + T + +KL W +YSK +++D D V NID LF+ +
Sbjct: 60 TVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE 119
Query: 140 GYFYAVMDCFCEKTWSHTPQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLST 199
PD WP FN+G+FV++PS+ T
Sbjct: 120 -------------------------LSAAPDP-GWPD--------CFNSGVFVYQPSVET 145
Query: 200 YHDLLETVQITTPTSFAEQDFLNMYFR-----DIYRPIPPIYNLVVAMLWRHPENVEA-- 252
Y+ LL +Q LN +F DI + +P IYNL ++ + +A
Sbjct: 146 YNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFG 205
Query: 253 DKAKVVHYCA 262
AKVVH+
Sbjct: 206 ANAKVVHFLG 215
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 101 VINYSKLRIWEFV-EYSKMIYLDGDIQVFDNIDHLF--DLPDGYFYAVMDCFCEKTWSHT 157
+ Y++L++ E++ + K++YLD D+ V D++ L+ DL D + A +D F E+
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER----- 135
Query: 158 PQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETV-----QITTP 212
+ GY Q+ YFNAG+ + HD+ + Q
Sbjct: 136 ---QEGYKQKIGX---------ADGEYYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDV 183
Query: 213 TSFAEQDFLNMYFR 226
+ +QD LN F+
Sbjct: 184 XQYQDQDILNGLFK 197
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 39/184 (21%)
Query: 101 VINYSKLRIWEFV-EYSKMIYLDGDIQVFDNIDHLF--DLPDGYFYAVMDCFCEKTWSHT 157
+ Y++L++ E++ + K++YLD D+ V D++ L+ DL D + A +D F E+ +
Sbjct: 81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYK 140
Query: 158 PQFKIGYCQQCPDKVKWPAELGPKPALYFNAGMFVFEPSLSTYHDLLETV-----QITTP 212
KIG YFNAG+ + HD+ + Q
Sbjct: 141 Q--KIGMAD---------------GEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDV 183
Query: 213 TSFAEQDFLNMYFR-------DIYRPIPPIYNLVVAMLW-RHPENVEADKAKVV------ 258
+ ++D LN F+ + +P Y + RH + + D+ V
Sbjct: 184 MQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVS 243
Query: 259 HYCA 262
HYC
Sbjct: 244 HYCG 247
>pdb|3HS8|A Chain A, Intersectin 1-Peptide-Ap2 Alpha Ear Complex
Length = 273
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 212 PTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV 264
PT A QDF + + + P + N+ A +HP + E KAK++ + +A+
Sbjct: 163 PTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSAL 211
>pdb|1QTP|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
Length = 247
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 212 PTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV 264
PT A QDF + + + P + N+ A +HP + E KAK++ + +A+
Sbjct: 137 PTEXASQDFFQRW-KQLSNPQQEVQNIFKA---KHPXDTEITKAKIIGFGSAL 185
>pdb|1QTS|A Chain A, Crystal Structure Of The Ap-2 Clathrin Adaptor Alpha-
Appendage
pdb|1KY6|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KY7|A Chain A, The Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Amphiphysin Fxdxf
pdb|1KYD|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Epsin Dpw Peptide
pdb|1KYU|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
pdb|1KYF|A Chain A, Ap-2 Clathrin Adaptor Alpha-Appendage In Complex With
Eps15 Dpf Peptide
Length = 247
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 212 PTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV 264
PT A QDF + + + P + N+ A +HP + E KAK++ + +A+
Sbjct: 137 PTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSAL 185
>pdb|1B9K|A Chain A, Alpha-Adaptin Appendage Domain, From Clathrin Adaptor Ap2
Length = 238
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 212 PTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV 264
PT A QDF + + + P + N+ A +HP + E KAK++ + +A+
Sbjct: 128 PTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSAL 176
>pdb|1W80|A Chain A, Crystal Structure Of The Alpha-adaptin Appendage Domain,
From The Ap2 Adaptor Complex, Bound To 2 Peptides From
Synaptojanin170
pdb|2VJ0|A Chain A, Crystal Structure Of The Alpha-Adaptin Appendage Domain,
From The Ap2 Adaptor Complex, In Complex With An Fxdnf
Peptide From Amphiphysin1 And A Wvxf Peptide From
Synaptojanin P170
Length = 250
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 212 PTSFAEQDFLNMYFRDIYRPIPPIYNLVVAMLWRHPENVEADKAKVVHYCAAV 264
PT A QDF + + + P + N+ A +HP + E KAK++ + +A+
Sbjct: 140 PTEMASQDFFQRW-KQLSNPQQEVQNIFKA---KHPMDTEITKAKIIGFGSAL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,429,945
Number of Sequences: 62578
Number of extensions: 362822
Number of successful extensions: 661
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 36
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)