Query 024368
Match_columns 268
No_of_seqs 117 out of 793
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01470 Peptidase_C15: Pyrogl 100.0 1E-51 2.3E-56 362.7 13.2 189 43-251 1-201 (202)
2 PRK13194 pyrrolidone-carboxyla 100.0 5.7E-50 1.2E-54 352.9 20.5 189 44-252 2-206 (208)
3 PRK13195 pyrrolidone-carboxyla 100.0 1.1E-49 2.4E-54 353.3 20.2 189 43-251 2-207 (222)
4 PRK13196 pyrrolidone-carboxyla 100.0 1.6E-49 3.5E-54 350.9 20.3 190 43-252 2-210 (211)
5 PRK13193 pyrrolidone-carboxyla 100.0 1.8E-49 4E-54 349.9 19.9 172 44-235 2-173 (209)
6 PRK13197 pyrrolidone-carboxyla 100.0 5.8E-49 1.2E-53 348.3 19.8 190 43-252 2-203 (215)
7 COG2039 Pcp Pyrrolidone-carbox 100.0 1.1E-48 2.5E-53 335.0 15.2 188 44-251 2-201 (207)
8 TIGR00504 pyro_pdase pyrogluta 100.0 4.8E-48 1E-52 341.8 19.2 187 44-251 1-199 (212)
9 cd00501 Peptidase_C15 Pyroglut 100.0 2.1E-46 4.5E-51 326.7 15.5 171 44-234 2-174 (194)
10 KOG4755 Predicted pyroglutamyl 99.9 9.4E-24 2E-28 184.8 16.4 182 43-251 20-211 (213)
11 PF06162 DUF976: Caenorhabditi 99.7 1.7E-16 3.8E-21 133.4 9.3 134 42-198 23-166 (166)
12 PF06753 Bradykinin: Bradykini 57.8 4 8.6E-05 22.3 0.3 9 48-56 6-14 (19)
13 PF04321 RmlD_sub_bind: RmlD s 53.0 22 0.00047 32.4 4.5 11 118-128 50-60 (286)
14 PRK10667 Hha toxicity attenuat 42.3 25 0.00054 28.6 2.7 45 201-253 15-59 (122)
15 PF01261 AP_endonuc_2: Xylose 41.2 1.6E+02 0.0035 24.2 7.8 76 178-253 28-121 (213)
16 PLN02778 3,5-epimerase/4-reduc 39.1 93 0.002 28.4 6.4 24 40-69 7-30 (298)
17 PRK13364 protocatechuate 4,5-d 37.1 85 0.0019 29.0 5.8 107 100-229 36-151 (278)
18 PRK09620 hypothetical protein; 33.1 1.6E+02 0.0034 26.3 6.8 87 43-142 4-107 (229)
19 PF10757 YbaJ: Biofilm formati 29.6 40 0.00087 27.5 2.0 45 201-253 15-59 (122)
20 COG1091 RfbD dTDP-4-dehydrorha 29.0 99 0.0021 28.8 4.8 14 117-130 48-61 (281)
21 PRK01271 4-oxalocrotonate taut 28.1 77 0.0017 23.6 3.2 33 224-256 3-36 (76)
22 PRK09987 dTDP-4-dehydrorhamnos 24.7 1.3E+02 0.0027 27.4 4.7 12 44-55 2-13 (299)
23 PF00994 MoCF_biosynth: Probab 22.7 2.8E+02 0.0061 22.3 6.0 66 45-130 2-67 (144)
24 PF10662 PduV-EutP: Ethanolami 22.4 79 0.0017 26.5 2.6 22 195-216 40-61 (143)
25 PF09419 PGP_phosphatase: Mito 21.5 2E+02 0.0042 24.7 4.9 48 178-227 63-113 (168)
26 KOG2098 Predicted N6-adenine R 20.8 1.1E+02 0.0024 30.7 3.5 122 11-160 444-581 (591)
27 PF13983 YsaB: YsaB-like lipop 20.5 46 0.001 24.7 0.7 13 43-55 35-47 (77)
28 PF10542 Vitelline_membr: Vite 20.5 48 0.001 21.4 0.7 7 4-10 10-16 (38)
29 COG1854 LuxS LuxS protein invo 20.4 1.2E+02 0.0026 26.0 3.2 40 219-259 81-131 (161)
No 1
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=100.00 E-value=1e-51 Score=362.71 Aligned_cols=189 Identities=33% Similarity=0.528 Sum_probs=131.4
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (268)
Q Consensus 43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl 122 (268)
++|||||||||+++++||||+++++|++.. ..+++| ...++||+|+.+.+. +.+++. +.+||+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~-----~~~~~v-~~~~lPV~~~~~~~~----l~~~l~-------~~~Pdl 63 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGEL-----IGGAEV-HTRELPVSYEKAFEA----LEELLE-------EHQPDL 63 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSE-----ETTEEE-EEEEE-SSHHHHHHH----HHHHHH-------HH--SE
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCc-----CCCceE-EEEEecCchHhHHHH----HHHHHH-------hcCCcE
Confidence 389999999999999999999999997621 135565 346788887544333 333332 368999
Q ss_pred EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 024368 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF 202 (268)
Q Consensus 123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~Y 202 (268)
|||+|++++++.|+||++|+|.+++++||++|++|.+++|.+ +||. .++|+||+++|+++|+++|+|+++|+|||+|
T Consensus 64 VIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~-~gp~--~~~t~lp~~~l~~~l~~~gip~~~S~dAG~Y 140 (202)
T PF01470_consen 64 VIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVP-DGPE--AYFTTLPVRALVEALREAGIPVEISNDAGRY 140 (202)
T ss_dssp EEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SST-TS-S--EEE-BS-HHHHHHHHHHTT--EEEES---SS
T ss_pred EEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccC-CCcc--ceecCCCHHHHHHHHHHcCCCCcccCChhhh
Confidence 999999999999999999999999999999999999999987 5775 4679999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhc--CCceEEEecCCCCCC----------ChHHHHHHHHHHHHHHHh
Q 024368 203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFLTI----------DEETQMQFAASLLEFASQ 251 (268)
Q Consensus 203 LCNyiyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~lI~~la~ 251 (268)
||||+||+||++.+++ +.+++|||||++++. +-+++.+.+...|+++++
T Consensus 141 lCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~~~~~~~~ 201 (202)
T PF01470_consen 141 LCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRAAIEAIVD 201 (202)
T ss_dssp HHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999998653 578999999987553 335677778888887765
No 2
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=5.7e-50 Score=352.87 Aligned_cols=189 Identities=28% Similarity=0.413 Sum_probs=157.2
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 024368 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (268)
Q Consensus 44 ~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlv 123 (268)
+|||||||||++++.||||+++++|++.. + .+.++ ...++||+|..+.+.+.+.+++ .+||+|
T Consensus 2 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~~~v-~~~~LPV~~~~~~~~l~~~l~~-----------~~Pd~v 64 (208)
T PRK13194 2 KVLVTGFEPFGGDKKNPTMDIVKALDGKK----I-GDAKV-FGRVLPVSFKRAREELEKVLDE-----------IKPDIT 64 (208)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHhccccc----c-CCcEE-EEEEeCCchHhHHHHHHHHHHH-----------hCCCEE
Confidence 79999999999999999999999997632 2 23444 3457899887766555444433 689999
Q ss_pred EEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 024368 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (268)
Q Consensus 124 IHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~YL 203 (268)
||+|++++++.|+|||+|+|.+++++|||+|++|.+++|++ +||.. ++|+||+++++++|++.|+|+++|+|||+||
T Consensus 65 lhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~-~gp~~--y~ttlp~~~l~~~l~~~gip~~~S~dAG~yl 141 (208)
T PRK13194 65 INLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVE-GAPAA--YFATLPTREIVEELKKNGIPAVLSYSAGTYL 141 (208)
T ss_pred EEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccC-CCCCc--ccCCCCHHHHHHHHHhcCCCcEEeCCCccch
Confidence 99999999999999999999999999999999999999997 57754 5799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCCC--------------CChHHHHHHHHHHHHHHHhC
Q 024368 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFLT--------------IDEETQMQFAASLLEFASQW 252 (268)
Q Consensus 204 CNyiyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~~v~~lI~~la~~ 252 (268)
|||+||+||++.+++ +.+++|||||..++ ++-+++.+.+..+|+.+.+.
T Consensus 142 CN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~ 206 (208)
T PRK13194 142 CNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIGKGKNTPSMCLEMEIEAVKIAIRVALEE 206 (208)
T ss_pred hHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999987653 47899999996443 33355666677777777653
No 3
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.1e-49 Score=353.35 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=156.7
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (268)
Q Consensus 43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl 122 (268)
.+|||||||||+++++||||+++++|++. .+ .+.++. ..++||+|+.+.+.+.+.++ ..+||+
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~~----~~-~~~~v~-~~~lPv~f~~~~~~l~~~i~-----------~~~Pd~ 64 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDGR----TI-AGATVI-SRIVPNTFFESIAAAQQAIA-----------EIEPAL 64 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhcccc----cc-CCeEEE-EEEeCeEehHHHHHHHHHHH-----------HHCCCE
Confidence 37999999999999999999999999753 12 344553 35789998877655544444 368999
Q ss_pred EEEeeecCCCceeeeeEeeecCCCCC---CCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCC
Q 024368 123 WVHFGVNSGATRFAIEQQAVNEATFR---CPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDA 199 (268)
Q Consensus 123 vIHlGva~~~~~i~lE~~A~N~~~~~---~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dA 199 (268)
|||+|++++++.|++||+|+|.++++ +|||+|++|.+++|++ +||.. ++|+||+++|+++|+++|+|+++|+||
T Consensus 65 Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~-~gp~a--y~stLpv~~iv~~l~~~gipa~vS~~A 141 (222)
T PRK13195 65 VIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDP-AGPVA--YHATVPVRAMVLAMRKAGVPADVSDAA 141 (222)
T ss_pred EEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccC-CCcce--eecCCCHHHHHHHHHhcCCCceEecCC
Confidence 99999999999999999999998754 9999999999999997 67764 579999999999999999999999999
Q ss_pred CcccchHHHHHHHHhhhhc--CCceEEEecCCCCCC------------ChHHHHHHHHHHHHHHHh
Q 024368 200 GRFVCNYVYYHSLRFAEQN--GTKSLFVHVPLFLTI------------DEETQMQFAASLLEFASQ 251 (268)
Q Consensus 200 G~YLCNyiyY~sL~~~~~~--~~~~~FVHVP~~~~~------------~~e~~~~~v~~lI~~la~ 251 (268)
|+|||||+||++|++.++. +.++||||||++++. +-+++.+.+...|+++.+
T Consensus 142 GtYvCN~v~Y~sL~~~~~~~~~~~agFIHVP~~p~q~~~~~~~~~psm~l~~~~~av~~~i~~~~~ 207 (222)
T PRK13195 142 GTFVCNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAALDHNLGVPSMSVQTAVAGVTAGIEAAIR 207 (222)
T ss_pred CcceehHHHHHHHHHHhhcCCCceEEEEEcCCCHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999999987653 368999999976443 235556667777777764
No 4
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.6e-49 Score=350.88 Aligned_cols=190 Identities=25% Similarity=0.361 Sum_probs=158.6
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (268)
Q Consensus 43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl 122 (268)
.+|||||||||++++.||||+++++|++.. . .+.++ ...+|||+|..+.+.+.+.++ .++||+
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~~~v-~~~~LPV~~~~~~~~l~~~~~-----------~~~Pd~ 64 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNGEQ----A-GALRV-HSALLPVEPRAAMAALSRLLD-----------ELQPSA 64 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhccccc----C-CCcEE-EEEEeCCChhHHHHHHHHHHH-----------HhCCCE
Confidence 489999999999999999999999998742 1 23444 346789988766554444333 368999
Q ss_pred EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccc--cCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCC
Q 024368 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI--FPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAG 200 (268)
Q Consensus 123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I--~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG 200 (268)
|||+|++++++.|+|||+|+|.+++++|||+|++|.+++| .+ +||. .++|+||+++|++++++.|+|+++|+|||
T Consensus 65 vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~-~gp~--~y~stLpv~~l~~~l~~~gip~~iS~~AG 141 (211)
T PRK13196 65 VLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP-DAPA--AYLSTLPLRAILAAWHDAGIPGHISNTAG 141 (211)
T ss_pred EEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC-CCcc--ceecCCCHHHHHHHHHhcCCCceEccCCC
Confidence 9999999999999999999999999999999999999999 65 5664 46799999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhhc---CCceEEEecCCCC--------------CCChHHHHHHHHHHHHHHHhC
Q 024368 201 RFVCNYVYYHSLRFAEQN---GTKSLFVHVPLFL--------------TIDEETQMQFAASLLEFASQW 252 (268)
Q Consensus 201 ~YLCNyiyY~sL~~~~~~---~~~~~FVHVP~~~--------------~~~~e~~~~~v~~lI~~la~~ 252 (268)
+|||||+||++|++.+++ ++++||||||.++ .++.|++.+.+..+|+.+.+.
T Consensus 142 ~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~p~m~~~~~~~~v~~~i~~~~~~ 210 (211)
T PRK13196 142 LYVCNFVLYHALHQLHLRGRAEVPCGFLHVPANAQVALAVAGDRPPLPYLPQEEITRAVRVAAETMAGQ 210 (211)
T ss_pred ceeehHHHHHHHHHHHhcCCCCCeeEEEEcCCCHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999987543 3689999999872 234566677788888887663
No 5
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.8e-49 Score=349.92 Aligned_cols=172 Identities=27% Similarity=0.323 Sum_probs=147.3
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 024368 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (268)
Q Consensus 44 ~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlv 123 (268)
+|||||||||++++.||||++++.|++.. . .+.++ ...++||+|+.+.+.+.+.++ .++||+|
T Consensus 2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~~~-~----~~~~v-~~~~LPv~~~~~~~~l~~~~~-----------~~~Pd~v 64 (209)
T PRK13193 2 TVLLFGFEPFLEYKENPSQLIVEALNGST-I----LKEEV-KGVILPVEYEKIEDLIVTKIR-----------EMKPILT 64 (209)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHHhhccc-c----CCceE-EEEEeCCcHHHHHHHHHHHHH-----------HHCCCEE
Confidence 69999999999999999999999998642 1 23344 235788887666544433333 3689999
Q ss_pred EEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 024368 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (268)
Q Consensus 124 IHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~YL 203 (268)
||+|++++++.|++||+|+|.+++++|||+|++|.+++|++ +||. .++|+||+++|+++|+++|+|+++|+|||+||
T Consensus 65 l~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~-~gp~--~~~t~lp~~~l~~~l~~~Gip~~~S~~AG~yv 141 (209)
T PRK13193 65 LGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDP-LGQD--GIFTNIPVEDLVDLLNENGIPAELSLSAGSYL 141 (209)
T ss_pred EEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcccC-CCcc--eeecCCCHHHHHHHHHhcCCCceEecCCccch
Confidence 99999999999999999999999999999999999999997 6775 46799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhcCCceEEEecCCCCCCCh
Q 024368 204 CNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDE 235 (268)
Q Consensus 204 CNyiyY~sL~~~~~~~~~~~FVHVP~~~~~~~ 235 (268)
|||+||+||++.++.+.+++|||||++++...
T Consensus 142 CN~vyY~sl~~~~~~~~~a~FIHVP~~~~~~~ 173 (209)
T PRK13193 142 CNNAMYIIIREARKYNSLGGFIHVPLHESYAA 173 (209)
T ss_pred hHHHHHHHHHHHhccCCeeEEEEeCCchhhhh
Confidence 99999999998865567899999998877654
No 6
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=5.8e-49 Score=348.35 Aligned_cols=190 Identities=25% Similarity=0.368 Sum_probs=160.7
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (268)
Q Consensus 43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl 122 (268)
.+|||||||||++++.||||+++++|++.. . .+.+| ...++||+|+.+.+.+.+.+++ .+||+
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~~~i-~~~~lPV~y~~~~~~l~~~l~~-----------~~Pd~ 64 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPGKE----I-GGAEI-IKRQLPTVFGKSAEVLKEAIEE-----------VQPDA 64 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHccccc----c-CCcEE-EEEEECCChHHHHHHHHHHHHH-----------hCCCE
Confidence 379999999999999999999999997642 2 34455 3457999987776655544443 68999
Q ss_pred EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCcc
Q 024368 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRF 202 (268)
Q Consensus 123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~Y 202 (268)
|||+|++++++.|+|||+|+|.+++++|||+|.+|.+++|.+ +||. .++|+||+++|++++++.|+|+++|+|||+|
T Consensus 65 vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~Lp~~~l~~~l~~~gip~~~S~dAG~Y 141 (215)
T PRK13197 65 VICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVE-DGPA--AYFSTLPIKAMVKAIREAGIPASVSNTAGTF 141 (215)
T ss_pred EEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccC-CCCc--eeEcCCCHHHHHHHHHHcCCCceeccCCCce
Confidence 999999999999999999999999999999999999999997 5775 4679999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhc--CCceEEEecCCCCC----------CChHHHHHHHHHHHHHHHhC
Q 024368 203 VCNYVYYHSLRFAEQN--GTKSLFVHVPLFLT----------IDEETQMQFAASLLEFASQW 252 (268)
Q Consensus 203 LCNyiyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~la~~ 252 (268)
||||+||+||++.+++ +++++|||||++++ +..|++.+.+..+|+.+.+.
T Consensus 142 lCN~i~Y~sl~~~~~~~~~~~a~FIHvP~~~~~~~~~~~~p~~~~~~~~~av~~~i~~~~~~ 203 (215)
T PRK13197 142 VCNHVMYGLLHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGLELAIEAIVEN 203 (215)
T ss_pred eehHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999987643 47899999998833 34566677788888888764
No 7
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-48 Score=334.98 Aligned_cols=188 Identities=26% Similarity=0.414 Sum_probs=158.4
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 024368 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (268)
Q Consensus 44 ~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlv 123 (268)
+||||||+||++++.||||++++.|++... .+.+| ....+|++|.++..++-+.+++ .+||+|
T Consensus 2 kvLvTGFePF~~~~~NPs~e~vk~L~~~~i-----~g~~V-~~~~lP~~f~~s~~~l~~~i~~-----------~qPd~v 64 (207)
T COG2039 2 KVLVTGFEPFGGEPINPSWEAVKELNGRII-----GGAEV-KGRILPVVFKKSIDALVQAIAE-----------VQPDLV 64 (207)
T ss_pred eEEEEeccCCCCCCCChHHHHHHhcCcccc-----cCceE-EEEEcCccHHHHHHHHHHHHHh-----------hCCCeE
Confidence 799999999999999999999999987531 22333 3467999998887666555554 799999
Q ss_pred EEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 024368 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (268)
Q Consensus 124 IHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~YL 203 (268)
|.+|+++||..|++||+|+|..|+++|||+|++|.+++|.+ +||++| +|+||+++|+.+++++|+|+.+|++||+|+
T Consensus 65 l~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~-dGpaAY--fstlPvkamv~~~~~~GiPA~vS~sAGTyv 141 (207)
T COG2039 65 LAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDP-DGPAAY--FSTLPVKAMVQAIREAGIPASVSNSAGTYV 141 (207)
T ss_pred EEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCC-CCchhh--hhcCcHHHHHHHHHHcCCChhhhcccchhh
Confidence 99999999999999999999999999999999999999998 688765 599999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCCC----------CChHHHHHHHHHHHHHHHh
Q 024368 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFLT----------IDEETQMQFAASLLEFASQ 251 (268)
Q Consensus 204 CNyiyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~la~ 251 (268)
||+++|..||+..++ +.++||||||..++ ++-++..+-+..-|+.+.+
T Consensus 142 CNhvmY~~l~~~~~~~~~~~~GFiHvPy~peqa~~~~~~PsMsl~~ivrgv~~aIe~~~~ 201 (207)
T COG2039 142 CNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQAARKPNTPSMSLDTIVRGVRAAIEAILR 201 (207)
T ss_pred hHHHHHHHHHHHHHhCCCCcceeEeecCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999998654 46899999997654 3334444445555665554
No 8
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=100.00 E-value=4.8e-48 Score=341.77 Aligned_cols=187 Identities=27% Similarity=0.395 Sum_probs=156.3
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 024368 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (268)
Q Consensus 44 ~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlv 123 (268)
+|||||||||++++.||||++|++|++.. + +.+| ...++||+|..+.+.+.+.+++ ++||+|
T Consensus 1 ~ILvTGF~PF~~~~~NPS~~~v~~L~~~~----~--g~~i-~~~~lPV~~~~~~~~l~~~l~~-----------~~Pd~v 62 (212)
T TIGR00504 1 KVLLTGFEPFGVDPVNPSWEAAEELDGRT----I--GATV-VAEILPNTFFEAIEALQQAIDE-----------IEPDIV 62 (212)
T ss_pred CEEEEeccCCCCCCCCcHHHHHHhcccCc----C--CcEE-EEEEeCCChHHHHHHHHHHHHH-----------HCCCEE
Confidence 49999999999999999999999997642 1 2344 3457899987776555454443 689999
Q ss_pred EEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 024368 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (268)
Q Consensus 124 IHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~YL 203 (268)
||+|++++++.|+|||+|+|.+++++|||+|++|.+++|++ +||. .++|+||+++|++++++.|+|+++|+|||+||
T Consensus 63 i~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttLpv~~l~~~l~~~gip~~~S~dAG~yl 139 (212)
T TIGR00504 63 IMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVP-DGPA--AYFATLPVRAMVLAMKKAGIPADVSYTAGTFV 139 (212)
T ss_pred EEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccC-CCCc--eeecCCCHHHHHHHHHHcCCCeeEeCCCCcee
Confidence 99999999999999999999999999999999999999997 5775 46799999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhc--CCceEEEecCCCCCCC----------hHHHHHHHHHHHHHHHh
Q 024368 204 CNYVYYHSLRFAEQN--GTKSLFVHVPLFLTID----------EETQMQFAASLLEFASQ 251 (268)
Q Consensus 204 CNyiyY~sL~~~~~~--~~~~~FVHVP~~~~~~----------~e~~~~~v~~lI~~la~ 251 (268)
|||+||+||++.+++ +++++|||||++++.. -+++.+.+...|+.+.+
T Consensus 140 CN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ 199 (212)
T TIGR00504 140 CNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGVPSMSLDTAVAGVTIAIETAIR 199 (212)
T ss_pred eHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 999999999987643 4689999999765542 24455566777777764
No 9
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=100.00 E-value=2.1e-46 Score=326.69 Aligned_cols=171 Identities=30% Similarity=0.469 Sum_probs=144.3
Q ss_pred EEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEE
Q 024368 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (268)
Q Consensus 44 ~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlv 123 (268)
+|||||||||++++.||||+++++|++... .++++. ..++||+|+.+.+.+.+.++ ..+||+|
T Consensus 2 ~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~-----~~~~i~-~~~lpv~y~~~~~~~~~~~~-----------~~~pd~v 64 (194)
T cd00501 2 KVLVTGFGPFGGEPVNPSWEAVKELPKLIL-----GGAEVV-GLELPVVFQKAVEVLPELIE-----------EHKPDLV 64 (194)
T ss_pred EEEEEecCCCCCCCCChHHHHHHhcccccc-----CCcEEE-EEEcCccHHHHHHHHHHHHH-----------HhCCCEE
Confidence 799999999999999999999999987421 344542 35688876554433322222 3689999
Q ss_pred EEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhCCCceEEeCCCCccc
Q 024368 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKKGYEVITSDDAGRFV 203 (268)
Q Consensus 124 IHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~gi~v~vS~dAG~YL 203 (268)
||+|++++++.++||++|+|.+++++||++|++|.+++|.+ +|+. .++|++|++++++++++.|+++++|+|||+||
T Consensus 65 lhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~-~g~~--~~~t~lp~~~l~~~l~~~g~~~~~S~dAG~Yl 141 (194)
T cd00501 65 IHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVP-GGPA--AYFSTLPVKAIVKALREAGIPARVSNDAGTYL 141 (194)
T ss_pred EEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccC-CCCC--eeeecCCHHHHHHHHHhcCCCceEcCCCCcee
Confidence 99999999999999999999988889999999999999987 5664 57899999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhcC--CceEEEecCCCCCCC
Q 024368 204 CNYVYYHSLRFAEQNG--TKSLFVHVPLFLTID 234 (268)
Q Consensus 204 CNyiyY~sL~~~~~~~--~~~~FVHVP~~~~~~ 234 (268)
|||+||+||++.+.++ ++++|||||++++..
T Consensus 142 Cn~~~Y~sL~~~~~~~~~~~a~FvHvP~~~~~~ 174 (194)
T cd00501 142 CNHVYYGSLHESATRGPFIRAGFIHVPYSPEQV 174 (194)
T ss_pred eHHHHHHHHHHHhccCCCceeceeecCCCHHHh
Confidence 9999999999876443 689999999987654
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.4e-24 Score=184.82 Aligned_cols=182 Identities=29% Similarity=0.399 Sum_probs=142.5
Q ss_pred eEEEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccE
Q 024368 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (268)
Q Consensus 43 ~~VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdl 122 (268)
.+|+...++||.|...||++.+++.|.+. .+....+.. . .-.+|+.+.+.+++++.. +. ..
T Consensus 20 rkvv~v~~~p~~g~~~~~aviv~dEl~k~---~~~s~~l~~----------~--~~~sy~~v~~~i~e~~~~---~~-~~ 80 (213)
T KOG4755|consen 20 RKVVTVFDFPFFGKQPSPAVIVLDELVKK---GGVSKYLCF----------K--MCTSYETVDEIILELWEE---HL-QS 80 (213)
T ss_pred eEEEEeccCCccCccCCchhhhHHHHHHc---CCceeccee----------c--ceechhhHhHHHHHhhcc---ce-eE
Confidence 35666666676665449999999999752 111111111 1 122688888888887642 23 88
Q ss_pred EEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhC---------CCce
Q 024368 123 WVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKK---------GYEV 193 (268)
Q Consensus 123 vIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~---------gi~v 193 (268)
.||+|.++..+.+.+|+.|++. +|...|.+|++|.+++... +++. ...+|.+++..+++...+. |++|
T Consensus 81 aIhl~sh~~knti~i~~~af~~-gy~~~d~~g~vp~~nkv~~-~~~d-~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V 157 (213)
T KOG4755|consen 81 AIHLGSHSQKNTIQIEQSAFSS-GYTQKDKCGKVPEGNKVKC-DGPD-TGGRSCINCEIVVKDVNERCASDGQKFGGLEV 157 (213)
T ss_pred EEEecccccCcEEEEEEecccC-CccchhhcccccCCceeEe-cccc-ccccccccHHHHHHhhhhhhhhccccCCceEE
Confidence 9999999999999999999998 7999999999999998876 4663 4567999998888776642 6999
Q ss_pred EEeCCCCcccchHHHHHHHHhhhhcCCceEEEecCCCCC-CChHHHHHHHHHHHHHHHh
Q 024368 194 ITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLT-IDEETQMQFAASLLEFASQ 251 (268)
Q Consensus 194 ~vS~dAG~YLCNyiyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~~v~~lI~~la~ 251 (268)
++|+|||||||||+||++|+.. +.+.+||||||+.. ..+|+|+++++.+| +++
T Consensus 158 ~~s~dagR~lc~y~y~~fl~q~---~~rslfv~VPpl~~~~tke~~~~~i~~il--~~~ 211 (213)
T KOG4755|consen 158 EISEDAGRYLCGYVYYSFLKQK---PCRSLFVHVPPLEGACTKEVQMRVIRSIL--FLS 211 (213)
T ss_pred EEcCcccceechhhhhhhhhhc---ccccceEecCccccccCHHHHHHHHHHHH--HHh
Confidence 9999999999999999988776 68899999998865 57889999999888 654
No 11
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=99.68 E-value=1.7e-16 Score=133.44 Aligned_cols=134 Identities=24% Similarity=0.356 Sum_probs=105.1
Q ss_pred ceEEEEEccc-CCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCc
Q 024368 42 AVTIHVTGFK-KFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (268)
Q Consensus 42 ~~~VLVTGFg-PF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~p 120 (268)
...++||||+ ||.+...||+..|...|.+. | .. ..++. -++++|+.|.+.+|++|. .+|
T Consensus 23 ~~~~vvTgF~~~fe~~nps~~viv~DEL~k~----~--~~------~~l~~----K~~~sYe~V~ekvpel~~----~~~ 82 (166)
T PF06162_consen 23 KKKVVVTGFDGPFEGENPSSAVIVLDELEKE----G--ED------KILFF----KMEVSYEEVDEKVPELWK----EQP 82 (166)
T ss_pred ecceeEEecCCCccCCCCCcceeeHHHhhcC----C--cc------ceeee----eccchHHHHHHHhHHHHh----hCC
Confidence 3468899995 99875444444444888642 2 11 12321 367889999999999883 579
Q ss_pred cEEEEeeecCCCceeeeeEeeecCCCCCCCCCCCCCCCCccccCCCCCcCcccccCCcHHHHHHHHHhC---------CC
Q 024368 121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVRETSIPVEEITRTLAKK---------GY 191 (268)
Q Consensus 121 dlvIHlGva~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~I~~~~gp~~~~l~T~Lpv~~l~~~l~~~---------gi 191 (268)
|++||||.|+-.+.|.+|+.|+-. +|..||.+|+.|.+.++..+ +. ...++|.++++.|++.+++. |+
T Consensus 83 ~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~-~~-e~~lkt~vdce~Lvkev~E~cglDg~KyGgL 159 (166)
T PF06162_consen 83 DFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCE-SE-ETVLKTFVDCEELVKEVNEKCGLDGEKYGGL 159 (166)
T ss_pred CeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccC-cc-ccccccccCHHHHHHHHHHHhcccccccCcE
Confidence 999999999999999999999998 79999999999999998653 33 25688999999999999874 77
Q ss_pred ceEEeCC
Q 024368 192 EVITSDD 198 (268)
Q Consensus 192 ~v~vS~d 198 (268)
.|+.|.|
T Consensus 160 ~Veksed 166 (166)
T PF06162_consen 160 KVEKSED 166 (166)
T ss_pred EEEecCC
Confidence 8888875
No 12
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=57.80 E-value=4 Score=22.27 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=7.6
Q ss_pred EcccCCCCC
Q 024368 48 TGFKKFHGV 56 (268)
Q Consensus 48 TGFgPF~~~ 56 (268)
+||.||++.
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 699999974
No 13
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=53.00 E-value=22 Score=32.44 Aligned_cols=11 Identities=0% Similarity=-0.003 Sum_probs=5.5
Q ss_pred CCccEEEEeee
Q 024368 118 SRRIIWVHFGV 128 (268)
Q Consensus 118 ~~pdlvIHlGv 128 (268)
.+||+|||.+-
T Consensus 50 ~~pd~Vin~aa 60 (286)
T PF04321_consen 50 FKPDVVINCAA 60 (286)
T ss_dssp H--SEEEE---
T ss_pred hCCCeEeccce
Confidence 58999999974
No 14
>PRK10667 Hha toxicity attenuator; Provisional
Probab=42.29 E-value=25 Score=28.63 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHhhhhcCCceEEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 024368 201 RFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWP 253 (268)
Q Consensus 201 ~YLCNyiyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~la~~~ 253 (268)
.|||+.+|=.++.... ....|.|+=|... ..++ +.+||+.||...
T Consensus 15 kyLCe~L~~e~i~~L~--~s~hgWvNDptS~-----~nlq-LNeLIEHIa~f~ 59 (122)
T PRK10667 15 KFLCETLYHECLANLG--ESNHGWVNDPTSA-----VNLQ-LNELIEHIATFA 59 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchH-----hhhh-HHHHHHHHHHHH
Confidence 5999999999998774 3567788766533 2222 567888888754
No 15
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=41.18 E-value=1.6e+02 Score=24.23 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhCCCceEEeCCCCccc---------c------hHHHHHHHHhhhhcCCceEEEecC---CCCCCChHHHH
Q 024368 178 PVEEITRTLAKKGYEVITSDDAGRFV---------C------NYVYYHSLRFAEQNGTKSLFVHVP---LFLTIDEETQM 239 (268)
Q Consensus 178 pv~~l~~~l~~~gi~v~vS~dAG~YL---------C------NyiyY~sL~~~~~~~~~~~FVHVP---~~~~~~~e~~~ 239 (268)
..+++.+.+++.|+.+....-..... . -..+...+..++.-+.+.+-+|.+ .......+...
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~ 107 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW 107 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH
Confidence 36788899999999853221111111 1 235566666666667899999988 45555566666
Q ss_pred HHHHHHHHHHHhCC
Q 024368 240 QFAASLLEFASQWP 253 (268)
Q Consensus 240 ~~v~~lI~~la~~~ 253 (268)
+.+.+-++.|++..
T Consensus 108 ~~~~~~l~~l~~~a 121 (213)
T PF01261_consen 108 ERLAENLRELAEIA 121 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555555543
No 16
>PLN02778 3,5-epimerase/4-reductase
Probab=39.06 E-value=93 Score=28.38 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=16.5
Q ss_pred CCceEEEEEcccCCCCCCCCchHHHHHHHH
Q 024368 40 PPAVTIHVTGFKKFHGVSENPTETIVSNLR 69 (268)
Q Consensus 40 ~~~~~VLVTGFgPF~~~~~NPS~~iv~~L~ 69 (268)
+...+|||||=.-|-| ..+++.|.
T Consensus 7 ~~~~kiLVtG~tGfiG------~~l~~~L~ 30 (298)
T PLN02778 7 SATLKFLIYGKTGWIG------GLLGKLCQ 30 (298)
T ss_pred CCCCeEEEECCCCHHH------HHHHHHHH
Confidence 3445899999888876 33555554
No 17
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=37.11 E-value=85 Score=29.04 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred HHHHHHHHhccccccccCCCccEEEEee-ecCCCceeeee---EeeecCCCCCCCCCCCCCCCCc-cccCCCCCcCcccc
Q 024368 100 LYQTLQSAINEKDSESANSRRIIWVHFG-VNSGATRFAIE---QQAVNEATFRCPDEMGWKPQKV-PIFPADGEISRVRE 174 (268)
Q Consensus 100 ~y~~v~~~v~~~~~~~~~~~pdlvIHlG-va~~~~~i~lE---~~A~N~~~~~~pD~~G~~p~~~-~I~~~~gp~~~~l~ 174 (268)
.|+++.+.+. ..+||++|-+| -+. ..+-.+ ..+......-..|..++-+... ++ .++
T Consensus 36 a~~~~~~~v~-------~~~PDvvVvis~dH~--~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~---~~~------ 97 (278)
T PRK13364 36 GFPPVREWLE-------KVKPDVAVVFYNDHG--LNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPF---KGD------ 97 (278)
T ss_pred HHHHHHHHHH-------HhCCCEEEEECCchH--hhhccccCCeEEEeeCceecCChhhcCCCCCCCC---CCC------
Confidence 3455555444 46899999999 432 333334 5565554433444333322111 11 111
Q ss_pred cCCc-HHHHHHHHHhCCCceEEeCCCCcccchHHHHHHHHhhhh---cCCceEEEecCC
Q 024368 175 TSIP-VEEITRTLAKKGYEVITSDDAGRFVCNYVYYHSLRFAEQ---NGTKSLFVHVPL 229 (268)
Q Consensus 175 T~Lp-v~~l~~~l~~~gi~v~vS~dAG~YLCNyiyY~sL~~~~~---~~~~~~FVHVP~ 229 (268)
.+ .++|.+.+.+.|+++..|++.+. .+=.+--|++... .+.+++=|-++.
T Consensus 98 --~~lA~~i~~~l~~~gid~~~~~~~~l---DHG~~vPL~~l~~~~d~~~pvVpv~ln~ 151 (278)
T PRK13364 98 --TELSWHIIESLVEEEFDITTCQEMLV---DHAFTLPLELFWPGRDYPVKVVPVCINT 151 (278)
T ss_pred --HHHHHHHHHHHHHcCCCeecccCCCC---CcchhhhHHHhCcccCCCCCEEEEEeec
Confidence 11 25678888889999988866443 3444444444421 124555555533
No 18
>PRK09620 hypothetical protein; Provisional
Probab=33.11 E-value=1.6e+02 Score=26.30 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred eEEEEEcc---cCCCC---CCCCchHHHHHHHHHHHHhcCCCCceeeceeee--eecc---------cCCcchhHHHHHH
Q 024368 43 VTIHVTGF---KKFHG---VSENPTETIVSNLREYMKKKGMPKGLILGSCNI--LETA---------GHGAVAPLYQTLQ 105 (268)
Q Consensus 43 ~~VLVTGF---gPF~~---~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~v--lpvs---------~~~~~~~~y~~v~ 105 (268)
.+||||+= +|.+. .+--+|..+-..|.+.+...|. ++.+..... .+.. +.. ...+++.++
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga--~V~li~g~~~~~~~~~~~~~~~~~V~s-~~d~~~~l~ 80 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA--HVIYLHGYFAEKPNDINNQLELHPFEG-IIDLQDKMK 80 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC--eEEEEeCCCcCCCcccCCceeEEEEec-HHHHHHHHH
Confidence 48999974 34333 3444566777777776655553 232211100 0100 001 012234444
Q ss_pred HHhccccccccCCCccEEEEeeecCCCceeeeeEeee
Q 024368 106 SAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAV 142 (268)
Q Consensus 106 ~~v~~~~~~~~~~~pdlvIHlGva~~~~~i~lE~~A~ 142 (268)
+.+. ..++|+|||+.- -..+++|+.+-
T Consensus 81 ~~~~-------~~~~D~VIH~AA---vsD~~~~~~~~ 107 (229)
T PRK09620 81 SIIT-------HEKVDAVIMAAA---GSDWVVDKICD 107 (229)
T ss_pred HHhc-------ccCCCEEEECcc---ccceecccccc
Confidence 4332 357899999864 36777877653
No 19
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=29.58 E-value=40 Score=27.48 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=32.4
Q ss_pred cccchHHHHHHHHhhhhcCCceEEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 024368 201 RFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWP 253 (268)
Q Consensus 201 ~YLCNyiyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~la~~~ 253 (268)
.|||+-+|=.++.... +...|.|+=|... ..++ +.+||+.||...
T Consensus 15 k~LCe~L~~e~~~~L~--~s~~gWvNDptS~-----~nlq-LNeLIEHIA~F~ 59 (122)
T PF10757_consen 15 KYLCESLYDEAIATLG--DSHHGWVNDPTSA-----VNLQ-LNELIEHIAAFI 59 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchh-----hhhh-HHHHHHHHHHHH
Confidence 5999999999998774 4567888877643 2222 567888888754
No 20
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=29.04 E-value=99 Score=28.83 Aligned_cols=14 Identities=7% Similarity=0.136 Sum_probs=10.9
Q ss_pred CCCccEEEEeeecC
Q 024368 117 NSRRIIWVHFGVNS 130 (268)
Q Consensus 117 ~~~pdlvIHlGva~ 130 (268)
..+||+|||..-..
T Consensus 48 ~~~PDvVIn~AAyt 61 (281)
T COG1091 48 ETRPDVVINAAAYT 61 (281)
T ss_pred hhCCCEEEECcccc
Confidence 36899999987543
No 21
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=28.07 E-value=77 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred EEecCCCCC-CChHHHHHHHHHHHHHHHhCCCCC
Q 024368 224 FVHVPLFLT-IDEETQMQFAASLLEFASQWPNCG 256 (268)
Q Consensus 224 FVHVP~~~~-~~~e~~~~~v~~lI~~la~~~~~~ 256 (268)
||||=.++. .+.|+.++++.++-+.+++..+|.
T Consensus 3 ~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~ 36 (76)
T PRK01271 3 HIDIKCFPRELDEEQKAALAADITDVIIRHLNSK 36 (76)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 455555554 567777788999999999988875
No 22
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=24.73 E-value=1.3e+02 Score=27.35 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=9.7
Q ss_pred EEEEEcccCCCC
Q 024368 44 TIHVTGFKKFHG 55 (268)
Q Consensus 44 ~VLVTGFgPF~~ 55 (268)
+|||||=.-|-|
T Consensus 2 ~iLVtG~~GfiG 13 (299)
T PRK09987 2 NILLFGKTGQVG 13 (299)
T ss_pred eEEEECCCCHHH
Confidence 799999766665
No 23
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.69 E-value=2.8e+02 Score=22.27 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=35.9
Q ss_pred EEEEcccCCCCCCCCchHHHHHHHHHHHHhcCCCCceeeceeeeeecccCCcchhHHHHHHHHhccccccccCCCccEEE
Q 024368 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWV 124 (268)
Q Consensus 45 VLVTGFgPF~~~~~NPS~~iv~~L~~~~~~~g~~~~~~i~~~~vlpvs~~~~~~~~y~~v~~~v~~~~~~~~~~~pdlvI 124 (268)
|+.||=+=..+...|.+.....++-+ +. ++++....++| .-.+.+.+++.+.. .+.|+||
T Consensus 2 Ii~~GdEl~~g~~~d~n~~~l~~~l~---~~----G~~v~~~~~v~--------Dd~~~i~~~l~~~~-----~~~D~Vi 61 (144)
T PF00994_consen 2 IISTGDELLSGQIRDSNGPFLAALLE---EL----GIEVIRYGIVP--------DDPDAIKEALRRAL-----DRADLVI 61 (144)
T ss_dssp EEEECHHHHTTSSEBHHHHHHHHHHH---HT----TEEEEEEEEEE--------SSHHHHHHHHHHHH-----HTTSEEE
T ss_pred EEEECccCcCCceEEhHHHHHHHHHH---Hc----CCeeeEEEEEC--------CCHHHHHHHHHhhh-----ccCCEEE
Confidence 57777777777777776655554432 23 34554334444 22234444443221 2449999
Q ss_pred EeeecC
Q 024368 125 HFGVNS 130 (268)
Q Consensus 125 HlGva~ 130 (268)
..|=-|
T Consensus 62 ttGG~g 67 (144)
T PF00994_consen 62 TTGGTG 67 (144)
T ss_dssp EESSSS
T ss_pred EcCCcC
Confidence 999543
No 24
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=22.44 E-value=79 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=18.6
Q ss_pred EeCCCCcccchHHHHHHHHhhh
Q 024368 195 TSDDAGRFVCNYVYYHSLRFAE 216 (268)
Q Consensus 195 vS~dAG~YLCNyiyY~sL~~~~ 216 (268)
.=+.||.|+.|--||++|-...
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta 61 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTA 61 (143)
T ss_pred EEECChhheeCHHHHHHHHHHH
Confidence 3477999999999999997654
No 25
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.53 E-value=2e+02 Score=24.73 Aligned_cols=48 Identities=19% Similarity=0.087 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhCCCc---eEEeCCCCcccchHHHHHHHHhhhhcCCceEEEec
Q 024368 178 PVEEITRTLAKKGYE---VITSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHV 227 (268)
Q Consensus 178 pv~~l~~~l~~~gi~---v~vS~dAG~YLCNyiyY~sL~~~~~~~~~~~FVHV 227 (268)
++.++++++++.+.. +-+||+||+.- ..-+-++-...+.-+.+ +|.|-
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIp-vl~h~ 113 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSD-DPDGERAEALEKALGIP-VLRHR 113 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCccc-CccHHHHHHHHHhhCCc-EEEeC
Confidence 567788999988776 68999999987 54444444444333333 45564
No 26
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=20.84 E-value=1.1e+02 Score=30.71 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=77.3
Q ss_pred ecceeecchhcccccccccccccccCCCCCCceEEEEEcc-cCCCCC---------CCCchHHHHHHHHHHHHhcCCCCc
Q 024368 11 CLDIDFNFHAINTLPYFISRQLFVMGSEGPPAVTIHVTGF-KKFHGV---------SENPTETIVSNLREYMKKKGMPKG 80 (268)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~VLVTGF-gPF~~~---------~~NPS~~iv~~L~~~~~~~g~~~~ 80 (268)
||. -|-|.-++-+..+--.||| ||+.||= |.+.+| .-||.|. +.|+.-|
T Consensus 444 cLn-lWGY~rVdEiiWVKTNQLq----------RiIrTGRTGHWLNH~KEHcLVG~KGNP~~~----------Nr~iD~D 502 (591)
T KOG2098|consen 444 CLN-LWGYERVDEIIWVKTNQLQ----------RIIRTGRTGHWLNHGKEHCLVGVKGNPQGF----------NRGLDCD 502 (591)
T ss_pred HHH-hhchhhhheeEEEeechhh----------hheecCccccccccCcceeEeeeccChhhh----------ccCCCcc
Confidence 444 3999999999999888887 6888997 666654 5688752 2355333
Q ss_pred eeeceeeeeecccCCcchhHHHHHHHHhc-----cccccccCCCccEEEEeeec-CCCceeeeeEeeecCCCCCCCCCCC
Q 024368 81 LILGSCNILETAGHGAVAPLYQTLQSAIN-----EKDSESANSRRIIWVHFGVN-SGATRFAIEQQAVNEATFRCPDEMG 154 (268)
Q Consensus 81 ~~i~~~~vlpvs~~~~~~~~y~~v~~~v~-----~~~~~~~~~~pdlvIHlGva-~~~~~i~lE~~A~N~~~~~~pD~~G 154 (268)
++..+|.++|.+ -..+|.-+|+..| ++.++..+.+|- .|.+|-- .|.+.|.-+.+|+=.. +.||.+-
T Consensus 503 --vIVaevReTS~K--PDEiYgmiERlsp~tRKiElFgR~HN~~p~-WiTlGNQL~Girlid~~l~arfkq--~Ypd~~~ 575 (591)
T KOG2098|consen 503 --VIVAEVRETSHK--PDEIYGMIERLSPGTRKIELFGRPHNVQPN-WITLGNQLDGIRLIDPDLVARFKQ--RYPDGII 575 (591)
T ss_pred --eeehhhhhhcCC--cHHHHHHHHHhCCCcceeeeecCccCCCCC-eEEecccccceeecChhHhHHHHh--hCccccc
Confidence 333566677654 4678999998777 233333345665 5777742 2556666777776543 4566665
Q ss_pred CCCCCc
Q 024368 155 WKPQKV 160 (268)
Q Consensus 155 ~~p~~~ 160 (268)
..|.+.
T Consensus 576 q~P~n~ 581 (591)
T KOG2098|consen 576 QKPKNL 581 (591)
T ss_pred CCCCCc
Confidence 555443
No 27
>PF13983 YsaB: YsaB-like lipoprotein
Probab=20.50 E-value=46 Score=24.69 Aligned_cols=13 Identities=54% Similarity=1.025 Sum_probs=11.7
Q ss_pred eEEEEEcccCCCC
Q 024368 43 VTIHVTGFKKFHG 55 (268)
Q Consensus 43 ~~VLVTGFgPF~~ 55 (268)
-+|-||||+.|.|
T Consensus 35 q~idv~~FeqfQg 47 (77)
T PF13983_consen 35 QKIDVTGFEQFQG 47 (77)
T ss_pred eeEeecchhhhcc
Confidence 4799999999997
No 28
>PF10542 Vitelline_membr: Vitelline membrane cysteine-rich region; InterPro: IPR013135 In Drosophila melanogaster (Fruit fly) the vitelline membrane (VM) is the first layer of the eggshell produced by the follicular epithelium. It is composed of at least four different proteins. VM proteins are similarly organised with a central highly conserved 38-amino acid domain which is flanked by unrelated regions. Since the surrounding regions have diverged significantly, it is possible that the VM domain is of key importance in VM protein structure [, ]. The VM domain contains three highly conserved cysteines.
Probab=20.49 E-value=48 Score=21.44 Aligned_cols=7 Identities=71% Similarity=1.483 Sum_probs=5.1
Q ss_pred eeEEeee
Q 024368 4 VYVFSCR 10 (268)
Q Consensus 4 ~~~~~~~ 10 (268)
-|||||.
T Consensus 10 nY~FSCq 16 (38)
T PF10542_consen 10 NYVFSCQ 16 (38)
T ss_pred ceeEecc
Confidence 3788885
No 29
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=20.36 E-value=1.2e+02 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhCC-----------CCCCCC
Q 024368 219 GTKSLFVHVPLFLTIDEETQMQFAASLLEFASQWP-----------NCGWPM 259 (268)
Q Consensus 219 ~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~la~~~-----------~~~~~~ 259 (268)
++++||- +=......++...+++.+.++.++++. .|||--
T Consensus 81 GCrTGFY-m~l~G~~~~~~i~~~~~~~m~dvl~~~~~~~IP~~ne~qCG~y~ 131 (161)
T COG1854 81 GCRTGFY-MILIGTPTSQDIADVLEATMKDVLKVQDQEEIPGANEKQCGNYK 131 (161)
T ss_pred ccccceE-EEEECCCCHHHHHHHHHHHHHHHHcccccccCCccChhhccchh
Confidence 6788884 445566677777888888889888852 899854
Done!