BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024369
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L+ V
Sbjct: 42 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVMHLINHGIPADLMERV 94
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 95 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 145
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG-- 180
A + + WP P ++ EY L+ K+ + +++ LG P E G
Sbjct: 146 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 205
Query: 181 DAFWVLRIIGYP 192
+ ++I YP
Sbjct: 206 ELLLQMKINYYP 217
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L+ V
Sbjct: 43 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVMHLINHGIPADLMERV 95
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 96 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 146
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG-- 180
A + + WP P ++ EY L+ K+ + +++ LG P E G
Sbjct: 147 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 181 DAFWVLRIIGYP 192
+ ++I YP
Sbjct: 207 ELLLQMKINYYP 218
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNI 66
++P IDVSPL + KM +V +Q+D A ++ GFFY HGI +V+ +
Sbjct: 8 NVPKIDVSPLFGDDQAAKM-------RVAQQIDAASRDTGFFYAVNHGI------NVQRL 54
Query: 67 TQKFFDLPYEEKIKIKLTPATGY----RGYQRIGENITKGIPDMHEAIDCYKEIQEGMY- 121
+QK ++ + +TP + R Y + ++ + + +I K ++ Y
Sbjct: 55 SQK------TKEFHMSITPEEKWDLAIRAYNKEHQDQVRA--GYYLSIPGKKAVESFCYL 106
Query: 122 -----------GALGKTMEGCNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALG 168
A T E N WP P F+ E+Y LS +++G ALALG
Sbjct: 107 NPNFTPDHPRIQAKTPTHE-VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG 165
Query: 169 GSP-FEFEGVRAGDAFWVLRIIGYPGL 194
F + D + +I YP L
Sbjct: 166 KEENFFARHFKPDDTLASVVLIRYPYL 192
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNI 66
++P IDVSPL + KM +V +Q+D A ++ GFFY HGI +V+ +
Sbjct: 8 NVPKIDVSPLFGDDQAAKM-------RVAQQIDAASRDTGFFYAVNHGI------NVQRL 54
Query: 67 TQKFFDLPYEEKIKIKLTPATGY----RGYQRIGENITKGIPDMHEAIDCYKEIQEGMY- 121
+QK ++ + +TP + R Y + ++ + + +I K ++ Y
Sbjct: 55 SQK------TKEFHMSITPEEKWDLAIRAYNKEHQDQVRA--GYYLSIPGKKAVESFCYL 106
Query: 122 -----------GALGKTMEGCNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALG 168
A T E N WP P F+ E+Y LS +++G ALALG
Sbjct: 107 NPNFTPDHPRIQAKTPTHE-VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALG 165
Query: 169 GSP-FEFEGVRAGDAFWVLRIIGYPGL 194
F + D + +I YP L
Sbjct: 166 KEENFFARHFKPDDTLASVVLIRYPYL 192
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 4 DFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63
D +P ID+ + + +D K+ E+ +++L KA + G ++ HGIP L V
Sbjct: 43 DGPQVPTIDLKNI--ESDDEKIREN-----CIEELKKASLDWGVXHLINHGIPADLXERV 95
Query: 64 KNITQKFFDLPYEEKIKIKLTPATG-YRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG 122
K ++FF L EEK K ATG +GY G + E D + +
Sbjct: 96 KKAGEEFFSLSVEEKEKYANDQATGKIQGY---GSKLANNASGQLEWEDYF------FHL 146
Query: 123 ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFE 175
A + + WP P ++ EY L+ K+ + +++ LG P E
Sbjct: 147 AYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLE 199
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 32 SQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRG 91
++ ++L + + GF + + + ++ I+ + + FF LP E K + G RG
Sbjct: 20 TRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKG-GARG 78
Query: 92 YQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNL 151
Y G KG D ++ + + ++ G + N WP P F+ + N
Sbjct: 79 YIPFGVETAKGA-DHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNS 137
Query: 152 CTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYP 192
K++ IA L +F D VLR++ YP
Sbjct: 138 LDGXGGKVLEAIATYLKLE-RDFFKPTVQDGNSVLRLLHYP 177
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 41 ACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPATGYRGYQ 93
AC+ GFF + HGIP + + V+ T+ + E++ K +L + G Q
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFK-ELVASKALEGVQ 78
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 21 EDPKMAEDPGVSQVVKQLDKACKEAGFFYVK-GHGIP---ESLINDVKNITQKFF 71
++P E+ + + + +D+A KEA F Y K + IP +S I +++ Q F+
Sbjct: 675 DNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFY 729
>pdb|1SCF|A Chain A, Human Recombinant Stem Cell Factor
pdb|1SCF|B Chain B, Human Recombinant Stem Cell Factor
pdb|1SCF|C Chain C, Human Recombinant Stem Cell Factor
pdb|1SCF|D Chain D, Human Recombinant Stem Cell Factor
Length = 273
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 50 VKGHGIPESLI-NDVKNITQKFFDLPYEEKIKIKLTPATGYR-GYQRIGENITKGIPDMH 107
VK GI + + N+VK++T+ +LP + I +K P + I E + + +
Sbjct: 23 VKTEGICRNRVTNNVKDVTKLVANLPKDYXITLKYVPGXDVLPSHCWISEXVVQLSDSLT 82
Query: 108 EAIDCYKEIQEGM--YGALGK 126
+ +D + I EG+ Y + K
Sbjct: 83 DLLDKFSNISEGLSNYSIIDK 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,657
Number of Sequences: 62578
Number of extensions: 367964
Number of successful extensions: 883
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 18
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)