Query 024369
Match_columns 268
No_of_seqs 188 out of 1580
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02485 oxidoreductase 100.0 3.3E-62 7.2E-67 431.3 23.5 256 1-259 1-269 (329)
2 COG3491 PcbC Isopenicillin N s 100.0 4.3E-61 9.3E-66 402.9 21.5 241 6-258 4-253 (322)
3 PTZ00273 oxidase reductase; Pr 100.0 1.1E-58 2.3E-63 407.7 21.7 243 6-259 4-258 (320)
4 PLN03002 oxidoreductase, 2OG-F 100.0 1.2E-57 2.6E-62 401.8 23.0 237 5-259 12-267 (332)
5 PLN02276 gibberellin 20-oxidas 100.0 1.2E-57 2.5E-62 405.8 20.7 239 6-259 39-285 (361)
6 PLN02750 oxidoreductase, 2OG-F 100.0 2.4E-57 5.3E-62 402.0 22.5 239 5-259 24-274 (345)
7 PLN02216 protein SRG1 100.0 1.4E-57 3E-62 404.5 20.1 231 6-259 51-290 (357)
8 PLN02758 oxidoreductase, 2OG-F 100.0 3.8E-57 8.2E-62 402.2 20.8 233 5-259 50-292 (361)
9 PLN02515 naringenin,2-oxogluta 100.0 5.2E-57 1.1E-61 400.3 21.5 232 7-259 37-276 (358)
10 PLN00417 oxidoreductase, 2OG-F 100.0 1.5E-56 3.3E-61 396.5 21.0 233 5-259 42-283 (348)
11 PLN02254 gibberellin 3-beta-di 100.0 1.6E-56 3.4E-61 397.2 20.6 224 6-259 55-290 (358)
12 PLN03178 leucoanthocyanidin di 100.0 2E-56 4.3E-61 398.1 20.6 235 5-259 45-290 (360)
13 PLN02299 1-aminocyclopropane-1 100.0 3.7E-56 7.9E-61 390.1 21.1 227 1-259 1-238 (321)
14 PLN02997 flavonol synthase 100.0 7E-56 1.5E-60 388.6 22.1 223 6-259 31-262 (325)
15 PLN02912 oxidoreductase, 2OG-F 100.0 4.5E-56 9.7E-61 393.6 20.7 229 5-259 39-276 (348)
16 PLN02904 oxidoreductase 100.0 1.1E-55 2.3E-60 392.1 21.2 231 6-259 50-287 (357)
17 PLN02393 leucoanthocyanidin di 100.0 3.1E-55 6.8E-60 390.3 20.6 233 5-259 49-293 (362)
18 PLN02947 oxidoreductase 100.0 3.6E-55 7.7E-60 390.3 20.0 229 6-259 65-304 (374)
19 PLN02639 oxidoreductase, 2OG-F 100.0 9.4E-55 2E-59 384.4 21.1 225 6-259 36-270 (337)
20 PLN02704 flavonol synthase 100.0 6.7E-55 1.4E-59 385.0 19.6 228 5-258 40-277 (335)
21 KOG0143 Iron/ascorbate family 100.0 8.9E-54 1.9E-58 373.9 20.9 232 6-258 16-256 (322)
22 PLN02403 aminocyclopropanecarb 100.0 2.3E-53 5.1E-58 369.0 20.6 221 7-259 2-234 (303)
23 PLN02984 oxidoreductase, 2OG-F 100.0 2.3E-53 5.1E-58 374.4 19.6 223 7-259 38-279 (341)
24 PLN02156 gibberellin 2-beta-di 100.0 2.8E-53 6E-58 373.1 19.9 223 7-259 26-260 (335)
25 PLN02365 2-oxoglutarate-depend 100.0 4E-53 8.8E-58 368.4 20.4 221 1-259 1-231 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 3.1E-42 6.7E-47 293.6 13.2 182 64-259 2-195 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 3.5E-27 7.5E-32 177.9 7.8 115 8-137 1-116 (116)
28 PLN03176 flavanone-3-hydroxyla 99.8 1.7E-19 3.6E-24 135.8 9.8 80 6-94 36-115 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.4 3.4E-14 7.5E-19 103.6 2.7 70 184-258 2-79 (98)
30 PF07350 DUF1479: Protein of u 82.1 1.6 3.6E-05 39.7 3.7 54 6-73 48-101 (416)
31 PRK08333 L-fuculose phosphate 74.1 6.3 0.00014 31.8 4.6 37 7-56 120-156 (184)
32 PRK08130 putative aldolase; Va 71.6 7.7 0.00017 32.0 4.7 25 32-56 139-163 (213)
33 smart00702 P4Hc Prolyl 4-hydro 71.2 20 0.00044 28.4 6.9 75 155-239 60-152 (178)
34 PRK05874 L-fuculose-phosphate 64.6 12 0.00026 31.1 4.4 25 32-56 139-163 (217)
35 TIGR02409 carnitine_bodg gamma 63.3 13 0.00029 33.4 4.9 52 6-72 108-159 (366)
36 COG2140 Thermophilic glucose-6 60.2 11 0.00024 31.1 3.3 55 185-242 91-152 (209)
37 PRK08087 L-fuculose phosphate 59.8 16 0.00036 30.2 4.4 25 32-56 134-158 (215)
38 PRK08660 L-fuculose phosphate 58.8 20 0.00043 28.7 4.7 24 32-55 126-149 (181)
39 TIGR00568 alkb DNA alkylation 57.5 33 0.00072 27.3 5.6 53 186-242 97-162 (169)
40 PRK03634 rhamnulose-1-phosphat 56.7 19 0.00041 31.1 4.4 36 32-67 191-228 (274)
41 PF00596 Aldolase_II: Class II 56.3 8.4 0.00018 30.8 2.1 37 6-55 122-159 (184)
42 PRK06833 L-fuculose phosphate 55.9 18 0.00038 30.0 4.0 25 32-56 136-160 (214)
43 PRK06755 hypothetical protein; 54.0 15 0.00032 30.4 3.2 37 7-56 136-172 (209)
44 TIGR02624 rhamnu_1P_ald rhamnu 52.2 23 0.00049 30.6 4.2 25 32-56 189-213 (270)
45 PRK06357 hypothetical protein; 50.5 34 0.00074 28.4 4.9 25 32-56 142-172 (216)
46 COG1402 Uncharacterized protei 48.4 63 0.0014 27.5 6.2 42 31-72 88-132 (250)
47 PRK06557 L-ribulose-5-phosphat 47.5 26 0.00056 29.1 3.7 35 32-66 142-180 (221)
48 TIGR01086 fucA L-fuculose phos 46.8 30 0.00064 28.6 4.0 24 32-55 133-156 (214)
49 PRK09553 tauD taurine dioxygen 46.7 38 0.00083 29.1 4.8 39 32-73 27-65 (277)
50 PF13532 2OG-FeII_Oxy_2: 2OG-F 45.7 40 0.00087 26.9 4.6 62 185-251 98-172 (194)
51 PF03668 ATP_bind_2: P-loop AT 43.0 35 0.00076 29.6 3.9 31 37-69 16-46 (284)
52 TIGR03328 salvage_mtnB methylt 41.6 45 0.00097 27.0 4.2 25 32-56 137-164 (193)
53 PF13640 2OG-FeII_Oxy_3: 2OG-F 41.1 8.7 0.00019 27.1 -0.1 18 223-240 53-76 (100)
54 PRK15401 alpha-ketoglutarate-d 40.6 29 0.00063 28.8 2.9 68 186-258 118-198 (213)
55 PF03863 Phage_mat-A: Phage ma 40.4 16 0.00034 33.2 1.4 43 206-248 274-318 (400)
56 PF11548 Receptor_IA-2: Protei 40.3 40 0.00087 23.9 3.1 33 156-188 19-51 (91)
57 PLN00052 prolyl 4-hydroxylase; 40.1 1.7E+02 0.0037 25.8 7.8 20 185-208 133-152 (310)
58 PRK05467 Fe(II)-dependent oxyg 39.8 1.4E+02 0.003 25.1 6.9 18 227-244 141-159 (226)
59 PF02633 Creatininase: Creatin 38.7 69 0.0015 26.8 5.1 36 31-66 84-122 (237)
60 cd00379 Ribosomal_L10_P0 Ribos 37.4 1.2E+02 0.0026 23.3 5.9 39 31-69 3-42 (155)
61 PF01471 PG_binding_1: Putativ 36.4 56 0.0012 20.2 3.3 42 33-74 3-44 (57)
62 PRK05834 hypothetical protein; 36.1 60 0.0013 26.4 4.1 23 33-55 136-160 (194)
63 PF11243 DUF3045: Protein of u 35.5 33 0.00072 23.5 2.0 21 36-56 36-56 (89)
64 cd00398 Aldolase_II Class II A 33.4 39 0.00086 27.6 2.7 40 6-56 121-160 (209)
65 TIGR02410 carnitine_TMLD trime 33.1 77 0.0017 28.5 4.7 51 8-72 101-151 (362)
66 PF01113 DapB_N: Dihydrodipico 31.4 97 0.0021 23.0 4.3 38 32-69 77-115 (124)
67 PF01361 Tautomerase: Tautomer 30.4 89 0.0019 19.6 3.5 25 150-174 14-38 (60)
68 PRK07490 hypothetical protein; 30.2 75 0.0016 26.9 3.9 25 32-56 146-170 (245)
69 PRK15331 chaperone protein Sic 30.0 48 0.0011 26.3 2.5 43 30-73 8-50 (165)
70 cd05797 Ribosomal_L10 Ribosoma 29.4 1.8E+02 0.0038 22.5 5.7 40 30-69 4-44 (157)
71 PF11771 DUF3314: Protein of u 29.2 68 0.0015 24.8 3.1 48 202-249 75-147 (164)
72 cd05796 Ribosomal_P0_like Ribo 29.1 1.6E+02 0.0034 23.2 5.4 38 31-68 3-41 (163)
73 cd05795 Ribosomal_P0_L10e Ribo 28.2 1.7E+02 0.0037 23.3 5.5 39 31-69 3-42 (175)
74 PRK02289 4-oxalocrotonate taut 28.0 96 0.0021 19.7 3.3 25 151-175 16-40 (60)
75 COG1660 Predicted P-loop-conta 26.8 92 0.002 26.9 3.7 28 39-68 18-45 (286)
76 PRK04516 minC septum formation 26.3 1.5E+02 0.0033 25.0 5.0 44 4-58 43-87 (235)
77 PRK04596 minC septum formation 26.3 1.2E+02 0.0025 25.9 4.3 49 5-63 48-97 (248)
78 PF08823 PG_binding_2: Putativ 26.1 1.2E+02 0.0025 20.6 3.5 35 32-66 15-49 (74)
79 COG0244 RplJ Ribosomal protein 25.6 2.2E+02 0.0047 22.8 5.6 40 30-69 7-47 (175)
80 PRK00099 rplJ 50S ribosomal pr 25.1 2.3E+02 0.0049 22.3 5.7 40 30-69 5-45 (172)
81 PRK01964 4-oxalocrotonate taut 23.8 1.2E+02 0.0025 19.4 3.2 25 150-174 15-39 (64)
82 KOG4513 Phosphoglycerate mutas 23.8 77 0.0017 28.8 2.8 26 32-57 435-462 (531)
83 PRK06754 mtnB methylthioribulo 23.8 91 0.002 25.6 3.2 24 32-55 148-172 (208)
84 cd00491 4Oxalocrotonate_Tautom 23.7 1.3E+02 0.0028 18.5 3.3 25 150-174 14-38 (58)
85 PF00356 LacI: Bacterial regul 23.6 82 0.0018 19.1 2.2 18 31-48 27-44 (46)
86 PRK02220 4-oxalocrotonate taut 23.6 1.2E+02 0.0025 19.0 3.1 24 151-174 16-39 (61)
87 PF02668 TauD: Taurine catabol 23.5 1.5E+02 0.0033 24.5 4.7 35 33-70 24-58 (258)
88 TIGR00013 taut 4-oxalocrotonat 23.5 1.3E+02 0.0028 19.0 3.3 24 151-174 16-39 (63)
89 PLN02433 uroporphyrinogen deca 23.5 1.2E+02 0.0027 26.9 4.2 41 30-70 293-337 (345)
90 COG0289 DapB Dihydrodipicolina 23.4 2.2E+02 0.0048 24.5 5.5 38 32-69 79-117 (266)
91 PHA00371 mat maturation protei 23.3 45 0.00097 30.3 1.3 36 215-250 296-333 (418)
92 PF01344 Kelch_1: Kelch motif; 22.4 48 0.001 19.4 1.0 18 215-232 29-47 (47)
93 PF12368 DUF3650: Protein of u 22.4 42 0.0009 18.2 0.6 17 48-64 9-25 (28)
94 PF00466 Ribosomal_L10: Riboso 22.4 2.8E+02 0.0061 19.4 5.6 42 29-70 4-46 (100)
95 PRK09220 methylthioribulose-1- 22.3 1.1E+02 0.0025 24.9 3.5 25 31-55 144-171 (204)
96 PF03460 NIR_SIR_ferr: Nitrite 22.0 1.4E+02 0.003 19.3 3.3 38 32-69 23-68 (69)
97 PF10509 GalKase_gal_bdg: Gala 21.8 34 0.00074 21.4 0.2 14 249-263 20-33 (52)
98 PTZ00397 macrophage migration 21.6 1.3E+02 0.0027 22.0 3.3 23 151-173 73-95 (116)
99 PF08921 DUF1904: Domain of un 21.5 1.4E+02 0.0029 21.9 3.4 27 150-176 12-38 (108)
100 KOG2675 Adenylate cyclase-asso 21.3 24 0.00053 32.3 -0.7 42 225-266 148-193 (480)
101 PRK00115 hemE uroporphyrinogen 21.0 1.5E+02 0.0032 26.4 4.3 41 30-70 300-344 (346)
102 PRK00745 4-oxalocrotonate taut 20.7 1.4E+02 0.0031 18.7 3.1 24 151-174 16-39 (62)
103 PF06708 DUF1195: Protein of u 20.5 1.7E+02 0.0036 22.5 3.7 38 29-72 88-125 (157)
104 PRK04019 rplP0 acidic ribosoma 20.2 2.5E+02 0.0053 25.0 5.4 40 30-69 7-47 (330)
105 PRK07044 aldolase II superfami 20.1 1.8E+02 0.0038 24.7 4.3 25 32-56 151-175 (252)
No 1
>PLN02485 oxidoreductase
Probab=100.00 E-value=3.3e-62 Score=431.29 Aligned_cols=256 Identities=62% Similarity=1.052 Sum_probs=213.6
Q ss_pred CCCCCCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhh
Q 024369 1 MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIK 80 (268)
Q Consensus 1 m~~~~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~ 80 (268)
|++++..||+|||+.+..+++++....++++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|++
T Consensus 1 ~~~~~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~ 80 (329)
T PLN02485 1 MATDFKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLK 80 (329)
T ss_pred CCCCCCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHh
Confidence 89999999999999986432222111123567799999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024369 81 IKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIM 160 (268)
Q Consensus 81 ~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll 160 (268)
+.......++||.+.+.+...+..|++|.|+++.+..+........++..+|.||+.+++||+.+++|++.|.+|+.+||
T Consensus 81 ~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll 160 (329)
T PLN02485 81 IKMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKIL 160 (329)
T ss_pred hcccCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 97655456799998877666677899999998765433222112223457899999889999999999999999999999
Q ss_pred HHHHHHhCCCccccccccccCccccEEEeccCCCCCC------CCCCCCCccccccccC------CcceeeecCCCCeEE
Q 024369 161 RGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGA------KDQKKPENNIGWYCNN------TEVDVFFLAYDNWEH 228 (268)
Q Consensus 161 ~~la~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~------~~g~~~HtD~g~lT~~------~glqv~~~~~~~W~~ 228 (268)
++||++||+++++|.+.+..++.+.||++||||++.. ..|+++|||+|+||++ +||||+. .+|+|++
T Consensus 161 ~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~-~~g~Wi~ 239 (329)
T PLN02485 161 RGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRN-LSGEWIW 239 (329)
T ss_pred HHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEc-CCCcEEE
Confidence 9999999999998876654456678999999999751 3589999999999963 6899986 4799999
Q ss_pred cCC-CcEEEEecchhhHhhhcccccccccccc
Q 024369 229 MLC-IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 229 V~p-pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|+| ||++||||||+||+||||++ -|..|-
T Consensus 240 V~p~pg~~vVNiGD~L~~~TnG~~--~St~HR 269 (329)
T PLN02485 240 AIPIPGTFVCNIGDMLKIWSNGVY--QSTLHR 269 (329)
T ss_pred CCCCCCcEEEEhHHHHHHHHCCEe--eCCCce
Confidence 999 99999999999999999999 888884
No 2
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=4.3e-61 Score=402.94 Aligned_cols=241 Identities=29% Similarity=0.490 Sum_probs=216.2
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.+... | +.++..++++|++||+++|||||+||||+..+++++++++++||+||.|+|.++.+..
T Consensus 4 ~~lp~idls~~~~~--~-----~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~ 76 (322)
T COG3491 4 RDLPIIDLSELAGS--D-----PGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVL 76 (322)
T ss_pred CcCceeccHHhcCC--C-----cHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 58999999998753 1 3478899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccc-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYG-ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIA 164 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~-~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la 164 (268)
...++||.+.+.|.+++..|+||.++++.+....... ....++.++|+|| .+|++|+++.+|+++|.+++.+||++||
T Consensus 77 ~~~~rGY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA 155 (322)
T COG3491 77 GRQHRGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIA 155 (322)
T ss_pred CccccccccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999887632222 2344678999999 8999999999999999999999999999
Q ss_pred HHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc-----CCcceeeecCCCCeEEcCC-CcEEE
Q 024369 165 LALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN-----NTEVDVFFLAYDNWEHMLC-IISFF 236 (268)
Q Consensus 165 ~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~-----~~glqv~~~~~~~W~~V~p-pg~~v 236 (268)
++|+|++++|+..+ +++.++||++|||+.+..+ .+.++|||+|+||+ .+||||..+ .|+|++|+| ||++|
T Consensus 156 ~~LdL~~d~Fd~~~-~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~-~g~Wl~v~P~pgtlv 233 (322)
T COG3491 156 LGLDLPEDFFDKRT-SDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPP-NGGWLDVPPIPGTLV 233 (322)
T ss_pred HHcCCChhhhhhcc-CCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecC-CCCeeECCCCCCeEE
Confidence 99999999999885 7888999999999887765 46899999999997 489999976 599999999 99999
Q ss_pred EecchhhHhhhccccccccccc
Q 024369 237 LYLFIYLFLWSKLCLCNFSGAH 258 (268)
Q Consensus 237 VnvGD~l~~~Sn~~l~~~~~~~ 258 (268)
|||||+||+||||+| =|..|
T Consensus 234 VNiGdmLe~~Tng~l--rST~H 253 (322)
T COG3491 234 VNIGDMLERWTNGRL--RSTVH 253 (322)
T ss_pred EeHHHHHHHHhCCee--ccccc
Confidence 999999999999999 77777
No 3
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.1e-58 Score=407.70 Aligned_cols=243 Identities=28% Similarity=0.410 Sum_probs=205.0
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
+.||+|||+.+.++ + ..++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 4 ~~iPvIDl~~~~~~--~-----~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~ 76 (320)
T PTZ00273 4 ASLPVIDVSPLFGG--E-----SAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRK 76 (320)
T ss_pred CCCCEEecHHhcCC--C-----hHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCC
Confidence 58999999998652 1 2356789999999999999999999999999999999999999999999999997654
Q ss_pred CCCCccccccccccc--cCCCCcchhhhcccccccCccc-cCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENIT--KGIPDMHEAIDCYKEIQEGMYG-ALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRG 162 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~--~~~~d~~E~f~~~~~~~~~~~~-~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~ 162 (268)
...++||.+.+.+.. ....|++|+|.++...+..... ..+.++.++|.||+.+++||+++++|+++|.+|+.+||++
T Consensus 77 ~~~~~GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~ 156 (320)
T PTZ00273 77 SRLHRGYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRA 156 (320)
T ss_pred CCCCCCCCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899998775543 2346999999987543221111 1122345789999988999999999999999999999999
Q ss_pred HHHHhCCCccccccccccCccccEEEeccCCCCCC---CCCCCCCccccccccC-----CcceeeecCCCCeEEcCC-Cc
Q 024369 163 IALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGA---KDQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-II 233 (268)
Q Consensus 163 la~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~---~~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg 233 (268)
||++||+++++|.+.+ ..+.+.||++||||++.. ..|+++|||+|+||++ +||||+. .+|+|++||| ||
T Consensus 157 la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~-~~g~Wi~V~p~pg 234 (320)
T PTZ00273 157 LALAIGLREDFFDSKF-MEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRN-LSGEWMDVPPLEG 234 (320)
T ss_pred HHHHhCcCHHHHHHhh-CCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEEC-CCCCEEeCCCCCC
Confidence 9999999999998876 456688999999999864 3589999999999963 7899976 4799999999 99
Q ss_pred EEEEecchhhHhhhcccccccccccc
Q 024369 234 SFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 234 ~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
++||||||+||+||||++ -|..|-
T Consensus 235 ~lvVNvGD~l~~~TnG~~--kSt~HR 258 (320)
T PTZ00273 235 SFVVNIGDMMEMWSNGRY--RSTPHR 258 (320)
T ss_pred eEEEEHHHHHHHHHCCee--eCCCcc
Confidence 999999999999999999 898883
No 4
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-57 Score=401.76 Aligned_cols=237 Identities=27% Similarity=0.372 Sum_probs=196.9
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
.+.||+|||+.. ++..++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 12 ~~~iP~IDl~~~-------------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~ 78 (332)
T PLN03002 12 VSSLNCIDLAND-------------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN 78 (332)
T ss_pred CCCCCEEeCCch-------------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC
Confidence 568999999952 2456899999999999999999999999999999999999999999999999653
Q ss_pred CCCCCcccccccccccc----CCCCcchhhhcccccccCccccCCCCCCCCCCCCCC--CchHHHHHHHHHHHHHHHHHH
Q 024369 85 PATGYRGYQRIGENITK----GIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLN--PPNFRALMEEYVNLCTDLSRK 158 (268)
Q Consensus 85 ~~~~~~GY~~~~~~~~~----~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~--~~~fr~~~~~y~~~~~~l~~~ 158 (268)
..++||.+.+.+... ...|+||.|.++...+.... .....+.++|.||+. +++||+.+++|+++|.+|+.+
T Consensus 79 --~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~-~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ 155 (332)
T PLN03002 79 --EKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDP-HWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMA 155 (332)
T ss_pred --CCCCCcCcccccccccccCCCCcceeeeEecccCCCCCc-cccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 257999987654322 13699999998854332211 111234568999985 689999999999999999999
Q ss_pred HHHHHHHHhCCCcccccccc-ccCccccEEEeccCCCCCCC---CCCCCCccccccccC-----CcceeeecC---CCCe
Q 024369 159 IMRGIALALGGSPFEFEGVR-AGDAFWVLRIIGYPGLSGAK---DQKKPENNIGWYCNN-----TEVDVFFLA---YDNW 226 (268)
Q Consensus 159 Ll~~la~~Lgl~~~~f~~~~-~~~~~s~lr~~~YPp~~~~~---~g~~~HtD~g~lT~~-----~glqv~~~~---~~~W 226 (268)
||++||++||+++++|.+.+ ...+.+.||++|||||+.+. .|+++|||+|+||++ +||||.... +|+|
T Consensus 156 ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~W 235 (332)
T PLN03002 156 IAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKW 235 (332)
T ss_pred HHHHHHHHcCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcE
Confidence 99999999999999998632 24456889999999997553 589999999999963 789997542 5799
Q ss_pred EEcCC-CcEEEEecchhhHhhhcccccccccccc
Q 024369 227 EHMLC-IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 227 ~~V~p-pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
++||| ||++||||||+||+||||++ -|..|-
T Consensus 236 i~Vpp~pg~~VVNiGD~L~~wTng~~--kSt~HR 267 (332)
T PLN03002 236 EYVPPIKGAFIVNLGDMLERWSNGFF--KSTLHR 267 (332)
T ss_pred EECCCCCCeEEEEHHHHHHHHhCCee--ECcCCe
Confidence 99999 99999999999999999999 888883
No 5
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1.2e-57 Score=405.83 Aligned_cols=239 Identities=19% Similarity=0.236 Sum_probs=200.7
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
.+||+|||+.+.++ | ..++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 39 ~~iPvIDls~~~~~--~-----~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~ 111 (361)
T PLN02276 39 LAVPLIDLGGFLSG--D-----EAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKP 111 (361)
T ss_pred CCCCeEEChhhcCC--C-----hHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCC
Confidence 47999999998642 2 2356789999999999999999999999999999999999999999999999987643
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
..++||.+.+.+...+..|++|.|.++........... +...+|.||+..++||+.+++|+..|.+|+.+||++||+
T Consensus 112 -~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~ 188 (361)
T PLN02276 112 -GESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVV--VDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGI 188 (361)
T ss_pred -CCccccCccCccccCCCCCeeeeEEEeccCcccccccc--hhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789988665544556799999998753221110000 112357899877899999999999999999999999999
Q ss_pred HhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc-----CCcceeeecCCCCeEEcCC-CcEEEE
Q 024369 166 ALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN-----NTEVDVFFLAYDNWEHMLC-IISFFL 237 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~-----~~glqv~~~~~~~W~~V~p-pg~~vV 237 (268)
+||+++++|.+.+ .++.+.||++|||||+.++ .|+++|||+|+||+ .+||||+ .+|+|++|+| ||++||
T Consensus 189 ~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~--~~g~Wi~V~p~pgalVV 265 (361)
T PLN02276 189 SLGVDRGYYRKFF-EDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVF--VDNKWRSVRPRPGALVV 265 (361)
T ss_pred HcCCCHHHHHHHh-cCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEE--ECCEEEEcCCCCCeEEE
Confidence 9999999998877 4556899999999997764 58999999999996 3789998 4899999999 999999
Q ss_pred ecchhhHhhhcccccccccccc
Q 024369 238 YLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 238 nvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
||||+||+||||++ -|..|-
T Consensus 266 NiGD~L~~~TNG~~--kSt~HR 285 (361)
T PLN02276 266 NIGDTFMALSNGRY--KSCLHR 285 (361)
T ss_pred EcHHHHHHHhCCcc--ccccce
Confidence 99999999999999 888884
No 6
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.4e-57 Score=402.03 Aligned_cols=239 Identities=26% Similarity=0.380 Sum_probs=197.7
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
...||+|||+.+.. +++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 24 ~~~iPvIDls~~~~----------~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~ 93 (345)
T PLN02750 24 DEEIPVIDLSVSTS----------HDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRD 93 (345)
T ss_pred CCCCCeEECCCCCc----------ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC
Confidence 35799999998521 34678899999999999999999999999999999999999999999999999664
Q ss_pred CCCCCccccccccccccCCCCcchhhhcccccccCcc---ccCCCCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024369 85 PATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMY---GALGKTM-EGCNQWPLNPPNFRALMEEYVNLCTDLSRKIM 160 (268)
Q Consensus 85 ~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~---~~~~~~~-~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll 160 (268)
.. ..+||.+. +...+..|++|.|+++........ .+..... ..+|.||+.+++||+++++|++.|.+|+.+||
T Consensus 94 ~~-~~~GY~~~--~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll 170 (345)
T PLN02750 94 EV-NPMGYHDS--EHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLL 170 (345)
T ss_pred CC-CccCcCcc--cccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 35799742 223345799999998753211000 0000011 23689999889999999999999999999999
Q ss_pred HHHHHHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEEcCC-C
Q 024369 161 RGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-I 232 (268)
Q Consensus 161 ~~la~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-p 232 (268)
++||++||+++++|.+.+. ++.+.||++|||||+.++ .|+++|||+|+||++ +||||...++|+|++|+| |
T Consensus 171 ~~la~~Lgl~~~~f~~~~~-~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g~Wi~V~p~p 249 (345)
T PLN02750 171 ELISLSLGLPADRLNGYFK-DQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQISRRSDGEWIPVKPIP 249 (345)
T ss_pred HHHHHHcCCCHHHHHHHhc-CcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCceEEeecCCCeEEEccCCC
Confidence 9999999999999988774 566899999999997653 589999999999963 789997656899999999 9
Q ss_pred cEEEEecchhhHhhhcccccccccccc
Q 024369 233 ISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 233 g~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|++||||||+||+||||++ -|..|-
T Consensus 250 g~~vVNiGD~L~~~Tng~~--~St~HR 274 (345)
T PLN02750 250 DAFIINIGNCMQVWTNDLY--WSAEHR 274 (345)
T ss_pred CeEEEEhHHHHHHHhCCee--ecccce
Confidence 9999999999999999999 888884
No 7
>PLN02216 protein SRG1
Probab=100.00 E-value=1.4e-57 Score=404.49 Aligned_cols=231 Identities=24% Similarity=0.280 Sum_probs=195.2
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.+.++ ..+++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++...+
T Consensus 51 ~~iPvIDls~~~~~---------~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~ 121 (357)
T PLN02216 51 SEIPIIDMKRLCSS---------TAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRP 121 (357)
T ss_pred CCCCeEEChhccCC---------ccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCC
Confidence 47999999998542 123568999999999999999999999999999999999999999999999997643
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
..++||.........+..||+|.|.++.... ....+|.||+.++.||+.+++|+++|.+|+.+||++||+
T Consensus 122 -~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~---------~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~ 191 (357)
T PLN02216 122 -GEIEGFGQAFVVSEDQKLDWADMFFLTMQPV---------RLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMAS 191 (357)
T ss_pred -CCccccCccccccccccCCceeeeeeeccCc---------ccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478886533222234569999997653211 124578999988899999999999999999999999999
Q ss_pred HhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC-CcEEE
Q 024369 166 ALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC-IISFF 236 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p-pg~~v 236 (268)
+|||++++|.+.+.....+.||++|||||+.++ .|+++|||+|+||+ .+||||. .+|+|++||| ||++|
T Consensus 192 ~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~--~~g~Wi~V~p~pgalv 269 (357)
T PLN02216 192 ALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIK--KDGKWVSVKPLPNALV 269 (357)
T ss_pred HcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEE--ECCEEEECCCCCCeEE
Confidence 999999999887743345789999999998765 58999999999995 3789996 4899999999 99999
Q ss_pred EecchhhHhhhcccccccccccc
Q 024369 237 LYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 237 VnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|||||+||+||||++ -|..|-
T Consensus 270 VNiGD~L~~~TNG~~--kS~~HR 290 (357)
T PLN02216 270 VNVGDILEIITNGTY--RSIEHR 290 (357)
T ss_pred EEcchhhHhhcCCee--eccCce
Confidence 999999999999999 888885
No 8
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-57 Score=402.23 Aligned_cols=233 Identities=24% Similarity=0.339 Sum_probs=196.9
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
..+||+|||+.+..+ + .+++++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 50 ~~~IPvIDl~~l~~~--~-----~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~ 122 (361)
T PLN02758 50 PDDIPVIDFSRLVKG--D-----NDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMA 122 (361)
T ss_pred CCCCCeEEchhhcCC--C-----hHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhccc
Confidence 347999999998642 1 234567899999999999999999999999999999999999999999999999764
Q ss_pred CCCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 PATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIA 164 (268)
Q Consensus 85 ~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la 164 (268)
+. .++||.........+..||+|.|.++.... ....+|.||+.+++||+.+++|+++|.+|+.+||++|+
T Consensus 123 ~~-~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~---------~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la 192 (361)
T PLN02758 123 PG-TVQGYGQAFVFSEDQKLDWCNMFALGVEPH---------FIRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIA 192 (361)
T ss_pred CC-CccccCcccccccccccCeeEEEEeeccCc---------cccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 578997543222244568999988763211 01357899998889999999999999999999999999
Q ss_pred HHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC-------CcceeeecCCCCeEEcCC-CcE
Q 024369 165 LALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-------TEVDVFFLAYDNWEHMLC-IIS 234 (268)
Q Consensus 165 ~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-------~glqv~~~~~~~W~~V~p-pg~ 234 (268)
++||+++++|.+.+ ..+.+.||+||||||+.++ .|+++|||+|+||++ +||||.. +|+|++|+| ||+
T Consensus 193 ~~Lgl~~~~f~~~~-~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v~GLQV~~--~g~Wi~V~p~pga 269 (361)
T PLN02758 193 MTLGLKEDRFEEMF-GEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSCVGLQILK--DNTWVPVHPVPNA 269 (361)
T ss_pred HHcCCChhhhHHHh-cCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCCCCeeeee--CCEEEeCCCCCCe
Confidence 99999999998877 4566899999999998764 589999999999962 3788864 699999999 999
Q ss_pred EEEecchhhHhhhcccccccccccc
Q 024369 235 FFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 235 ~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
+||||||+||+||||++ -|..|-
T Consensus 270 lVVNiGD~L~~~SNG~~--kS~~HR 292 (361)
T PLN02758 270 LVINIGDTLEVLTNGKY--KSVEHR 292 (361)
T ss_pred EEEEccchhhhhcCCee--ecccce
Confidence 99999999999999999 898884
No 9
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=5.2e-57 Score=400.29 Aligned_cols=232 Identities=19% Similarity=0.268 Sum_probs=194.1
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCCC
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA 86 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~ 86 (268)
.||+|||+.+... ++++.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.....
T Consensus 37 ~iPvIDls~~~~~--------~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~ 108 (358)
T PLN02515 37 EIPVISLAGIDEV--------GGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGG 108 (358)
T ss_pred CCCEEEChhccCC--------chHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCC
Confidence 6999999998531 23567899999999999999999999999999999999999999999999999876543
Q ss_pred CCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 87 TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALA 166 (268)
Q Consensus 87 ~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~~ 166 (268)
..+||.........+..||+|.|.+...... ....|.||+.++.||+.+++|+++|.+|+.+||++|+++
T Consensus 109 -~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~---------~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~ 178 (358)
T PLN02515 109 -KKGGFIVSSHLQGEAVQDWREIVTYFSYPVR---------TRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEA 178 (358)
T ss_pred -CccCcccccccccccccCceeeeccccCccc---------ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589964211111345799999976421110 123589999889999999999999999999999999999
Q ss_pred hCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEEcCC-CcEEEEe
Q 024369 167 LGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-IISFFLY 238 (268)
Q Consensus 167 Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg~~vVn 238 (268)
||+++++|.+.+ ....+.+|++|||+|+.++ .|+++|||+|+||++ +||||+..++++|++|+| ||++|||
T Consensus 179 Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp~pgalVVN 257 (358)
T PLN02515 179 MGLEKEALTKAC-VDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVEGAFVVN 257 (358)
T ss_pred cCCChhhHHHhh-cCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCCCCCeEEEE
Confidence 999999998876 3445789999999997653 589999999999963 789998755558999999 9999999
Q ss_pred cchhhHhhhcccccccccccc
Q 024369 239 LFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 239 vGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|||+||+||||++ -|..|-
T Consensus 258 iGD~L~~~TNG~~--kSt~HR 276 (358)
T PLN02515 258 LGDHGHYLSNGRF--KNADHQ 276 (358)
T ss_pred ccHHHHHHhCCee--eeecce
Confidence 9999999999999 888884
No 10
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.5e-56 Score=396.51 Aligned_cols=233 Identities=21% Similarity=0.221 Sum_probs=192.5
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
.+.||+|||+.+.++ + +.+++.+++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 42 ~~~IPvIDls~~~~~--~------~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~ 113 (348)
T PLN00417 42 EMDIPAIDLSLLLSS--S------DDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCARE 113 (348)
T ss_pred CCCCCeEEChhhcCC--C------chHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcC
Confidence 347999999998652 1 22345579999999999999999999999999999999999999999999999765
Q ss_pred CCCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 PATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIA 164 (268)
Q Consensus 85 ~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la 164 (268)
.. .++||.....-...+..|++|.+.++.. +.. ...+|.||+.+++||+.+++|+++|.+|+.+||++||
T Consensus 114 ~~-~~~GY~~~~~~~~~~~~d~~e~~~~~~~-p~~--------~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la 183 (348)
T PLN00417 114 IG-SIQGYGNDMILSDDQVLDWIDRLYLTTY-PED--------QRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMA 183 (348)
T ss_pred CC-CccccccccccccCCCcCccceeecccC-Ccc--------cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 5789964221111345688888766421 110 1235899998889999999999999999999999999
Q ss_pred HHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC-CcEE
Q 024369 165 LALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC-IISF 235 (268)
Q Consensus 165 ~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p-pg~~ 235 (268)
++||+++++|.+.+.....+.||++|||||+.++ .|+++|||+|+||+ .+||||. .+|+|++|+| ||++
T Consensus 184 ~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~--~~g~Wi~V~p~pg~l 261 (348)
T PLN00417 184 RSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQFL--KDGKWYKAPIVPDTI 261 (348)
T ss_pred HHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCceeEe--ECCeEEECCCCCCcE
Confidence 9999999999887754344679999999998764 58999999999996 2689986 4799999999 9999
Q ss_pred EEecchhhHhhhcccccccccccc
Q 024369 236 FLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 236 vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
||||||+||+||||++ -|..|-
T Consensus 262 VVNiGD~Le~~Tng~~--kSt~HR 283 (348)
T PLN00417 262 LINVGDQMEIMSNGIY--KSPVHR 283 (348)
T ss_pred EEEcChHHHHHhCCee--cccceE
Confidence 9999999999999999 899883
No 11
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.6e-56 Score=397.22 Aligned_cols=224 Identities=24% Similarity=0.311 Sum_probs=189.8
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.. +++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 55 ~~iPvIDl~~~----------------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~ 118 (358)
T PLN02254 55 ESIPVIDLSDP----------------NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSP 118 (358)
T ss_pred CCCCeEeCCCH----------------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCC
Confidence 47999999842 46899999999999999999999999999999999999999999999997653
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
..++||..........+.||+|.|.+..... ...+|.||+.+++||+++++|+++|++|+.+||++|++
T Consensus 119 -~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~----------~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~ 187 (358)
T PLN02254 119 -DGVSGYGVARISSFFNKKMWSEGFTIMGSPL----------EHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLG 187 (358)
T ss_pred -CCcccccccccccccCCCCceeeEEeecCcc----------ccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577887654333345678999998742110 12468999999999999999999999999999999999
Q ss_pred HhCCCccccccccc----cCccccEEEeccCCCCCCC--CCCCCCcccccccc-----CCcceeeecCCCCeEEcCC-Cc
Q 024369 166 ALGGSPFEFEGVRA----GDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN-----NTEVDVFFLAYDNWEHMLC-II 233 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~----~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~-----~~glqv~~~~~~~W~~V~p-pg 233 (268)
+|||++++|...+. .++.+.||+||||||+.++ .|+++|||+|+||+ .+||||... +|+|++|+| ||
T Consensus 188 ~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~~-~~~Wi~V~p~pg 266 (358)
T PLN02254 188 SLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQVFRE-GVGWVTVPPVPG 266 (358)
T ss_pred HcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCceEECC-CCEEEEcccCCC
Confidence 99999988865441 3456799999999998764 58999999999997 378999853 458999999 99
Q ss_pred EEEEecchhhHhhhcccccccccccc
Q 024369 234 SFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 234 ~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
++||||||+||+||||++ -|..|-
T Consensus 267 alVVNiGD~lq~~SNg~~--kS~~HR 290 (358)
T PLN02254 267 SLVVNVGDLLHILSNGRF--PSVLHR 290 (358)
T ss_pred CEEEEhHHHHHHHhCCee--ccccce
Confidence 999999999999999999 888884
No 12
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=2e-56 Score=398.05 Aligned_cols=235 Identities=22% Similarity=0.314 Sum_probs=196.8
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
...||+|||+.+.++ + .+++++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 45 ~~~iPvIDls~~~~~--~-----~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~ 117 (360)
T PLN03178 45 GPQVPVVDLSNIESD--D-----EVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYAND 117 (360)
T ss_pred CCCCCEEEchhhcCC--C-----hhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcc
Confidence 347999999998653 1 235778999999999999999999999999999999999999999999999999765
Q ss_pred CC-CCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 PA-TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGI 163 (268)
Q Consensus 85 ~~-~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~l 163 (268)
.. ..++||.....+...+..|++|.+.... .+.. ...+|.||+.+++||+.+++|+++|.+|+.+||++|
T Consensus 118 ~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~-~p~~--------~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~l 188 (360)
T PLN03178 118 QARGAAQGYGSKLAANASGQLEWEDYFFHLT-LPED--------KRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAIL 188 (360)
T ss_pred CCCCCccccccccccccccccchhHhhcccc-CCcc--------ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 3578996533222245568888876521 1110 124689999999999999999999999999999999
Q ss_pred HHHhCCCcccccccccc--CccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEEcCC-Cc
Q 024369 164 ALALGGSPFEFEGVRAG--DAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-II 233 (268)
Q Consensus 164 a~~Lgl~~~~f~~~~~~--~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg 233 (268)
|++||+++++|.+.+.. ++.+.||++|||+|+.++ .|+++|||+|+||++ +||||+. +|+|++|+| ||
T Consensus 189 a~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~--~g~Wi~V~p~pg 266 (360)
T PLN03178 189 SLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHNMVPGLQVLY--EGKWVTAKCVPD 266 (360)
T ss_pred HHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeCCCCceeEeE--CCEEEEcCCCCC
Confidence 99999999999887742 345789999999998764 589999999999973 7899983 799999999 99
Q ss_pred EEEEecchhhHhhhcccccccccccc
Q 024369 234 SFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 234 ~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
++||||||+||+||||++ -|..|-
T Consensus 267 ~lvVNiGD~L~~~TNG~~--kSt~HR 290 (360)
T PLN03178 267 SIVVHIGDTLEILSNGRY--KSILHR 290 (360)
T ss_pred eEEEEccHHHHHHhCCcc--ccccce
Confidence 999999999999999999 888885
No 13
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=3.7e-56 Score=390.10 Aligned_cols=227 Identities=17% Similarity=0.242 Sum_probs=192.1
Q ss_pred CCCCCCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhh
Q 024369 1 MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIK 80 (268)
Q Consensus 1 m~~~~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~ 80 (268)
|+. .+.||+|||+.+.. +++++++++|++||+++|||||+|||||.++++++++++++||+||.|+|++
T Consensus 1 ~~~-~~~iPvIDls~~~~----------~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~ 69 (321)
T PLN02299 1 MAK-MESFPVIDMEKLNG----------EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFK 69 (321)
T ss_pred CCC-CCCCCEEECcCCCc----------ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 565 45799999998742 2456789999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024369 81 IKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIM 160 (268)
Q Consensus 81 ~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll 160 (268)
+.. ..+||.+.+.+. +..|++|.|.+... + ....+.||+.++.||+.+++|++.|.+|+.+||
T Consensus 70 ~~~----~~~gy~~~~~~~--~~~d~ke~~~~~~~-~----------~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll 132 (321)
T PLN02299 70 EMV----ASKGLEGVQTEV--EDLDWESTFFLRHL-P----------ESNLADIPDLDDEYRKVMKDFALELEKLAEELL 132 (321)
T ss_pred ccc----CCCCcccccccC--CCcCHHHHcccccC-C----------ccccccCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 246887654332 45689999987521 1 123578999889999999999999999999999
Q ss_pred HHHHHHhCCCcccccccccc--CccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcC
Q 024369 161 RGIALALGGSPFEFEGVRAG--DAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHML 230 (268)
Q Consensus 161 ~~la~~Lgl~~~~f~~~~~~--~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~ 230 (268)
++|+++||+++++|.+.+.. .+...||++|||||+.++ .|+++|||+|+||+ .+||||. .+|+|++|+
T Consensus 133 ~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~--~~g~Wi~V~ 210 (321)
T PLN02299 133 DLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLL--KDGEWVDVP 210 (321)
T ss_pred HHHHHHcCCCHHHHHHHhcCCCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcc--cCCeEEECC
Confidence 99999999999999876632 345689999999998765 47899999999995 3689987 479999999
Q ss_pred C-CcEEEEecchhhHhhhcccccccccccc
Q 024369 231 C-IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 231 p-pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
| ||++||||||+||+||||++ -|..|-
T Consensus 211 p~pg~lvVNiGD~l~~~Tng~~--kS~~HR 238 (321)
T PLN02299 211 PMRHSIVVNLGDQLEVITNGKY--KSVMHR 238 (321)
T ss_pred CCCCeEEEEeCHHHHHHhCCce--ecccce
Confidence 9 99999999999999999999 888884
No 14
>PLN02997 flavonol synthase
Probab=100.00 E-value=7e-56 Score=388.62 Aligned_cols=223 Identities=24% Similarity=0.375 Sum_probs=189.5
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.+ ++++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 31 ~~IPvIDls~~-------------~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~- 96 (325)
T PLN02997 31 VDVPVVDLSVS-------------DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKE- 96 (325)
T ss_pred CCCCeEECCCC-------------CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC-
Confidence 37999999974 1357899999999999999999999999999999999999999999999998754
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
..++||.+... .+..|++|.+.... .+. . ....|.||+.+++||+++++|++.|.+|+.+||++|++
T Consensus 97 -~~~~GY~~~~~---~~~~d~~e~~~~~~-~p~-~-------~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~ 163 (325)
T PLN02997 97 -EDFEGYKRNYL---GGINNWDEHLFHRL-SPP-S-------IINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSE 163 (325)
T ss_pred -CCccccCcccc---cCCCCccceeEeee-cCc-c-------ccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24789986532 35668888765321 111 0 12458999988999999999999999999999999999
Q ss_pred HhCCCccccccccccC-ccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEEcCC-CcEEE
Q 024369 166 ALGGSPFEFEGVRAGD-AFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-IISFF 236 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~~~-~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg~~v 236 (268)
+||+++++|.+.+... ..+.||++|||||+.++ .|+++|||+|+||++ +||||+. +|+|++|+| ||++|
T Consensus 164 ~Lgl~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~--~g~Wi~V~p~pgalv 241 (325)
T PLN02997 164 GLGLPRETFTQSIGGETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAFK--DEQWLDLNYINSAVV 241 (325)
T ss_pred HcCCCHHHHHHHhcCCcccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEeE--CCcEEECCCCCCeEE
Confidence 9999999998877433 34589999999998764 689999999999973 7899983 689999999 99999
Q ss_pred EecchhhHhhhcccccccccccc
Q 024369 237 LYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 237 VnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|||||+||+||||++ -|..|-
T Consensus 242 VNiGD~Le~~TNG~~--kSt~HR 262 (325)
T PLN02997 242 VIIGDQLMRMTNGRF--KNVLHR 262 (325)
T ss_pred EEechHHHHHhCCcc--ccccce
Confidence 999999999999999 888884
No 15
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.5e-56 Score=393.57 Aligned_cols=229 Identities=21% Similarity=0.289 Sum_probs=190.6
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
..+||+|||+.+.+ +++++++++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 39 ~~~iPvIDls~~~~----------~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~ 108 (348)
T PLN02912 39 GDSIPLIDLRDLHG----------PNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSA 108 (348)
T ss_pred CCCCCeEECcccCC----------cCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhc
Confidence 35799999998853 23578899999999999999999999999999999999999999999999995443
Q ss_pred C-CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 P-ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGI 163 (268)
Q Consensus 85 ~-~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~l 163 (268)
. ....+||...... ..+..|++|.+.+... +. ...+|.||+.+++||+++++|+++|.+|+.+||++|
T Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-~~---------~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~l 177 (348)
T PLN02912 109 DTKKTTRLSTSFNVS-KEKVSNWRDFLRLHCY-PI---------EDFIEEWPSTPISFREVTAEYATSVRALVLTLLEAI 177 (348)
T ss_pred CCCCccccccccccc-ccccCCchheEEEeec-Cc---------ccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455443211 1335688898876421 10 013689999989999999999999999999999999
Q ss_pred HHHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc-----CCcceeeecCCCCeEEcCC-CcEE
Q 024369 164 ALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN-----NTEVDVFFLAYDNWEHMLC-IISF 235 (268)
Q Consensus 164 a~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~-----~~glqv~~~~~~~W~~V~p-pg~~ 235 (268)
+++||+++++|.+.+ ....+.||++|||||+.++ .|+++|||+|+||+ .+||||+ .+|+|++|+| ||++
T Consensus 178 a~~Lgl~~~~f~~~~-~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~--~~g~Wi~V~p~pgal 254 (348)
T PLN02912 178 SESLGLEKDRVSNTL-GKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVF--KDGKWIAVNPIPNTF 254 (348)
T ss_pred HHHcCCCHHHHHHHh-cCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCCCceEEE--ECCcEEECCCcCCeE
Confidence 999999999998876 3456789999999998764 68999999999996 3789997 4799999999 9999
Q ss_pred EEecchhhHhhhcccccccccccc
Q 024369 236 FLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 236 vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
||||||+||+||||++ -|..|-
T Consensus 255 vVNiGD~L~~~TNG~~--kSt~HR 276 (348)
T PLN02912 255 IVNLGDQMQVISNDKY--KSVLHR 276 (348)
T ss_pred EEEcCHHHHHHhCCEE--Eccccc
Confidence 9999999999999999 888884
No 16
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.1e-55 Score=392.05 Aligned_cols=231 Identities=23% Similarity=0.335 Sum_probs=187.0
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.+.+ ...+++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 50 ~~iPvIDls~~~~---------~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~ 120 (357)
T PLN02904 50 ITLPVIDLSLLHD---------PLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDN 120 (357)
T ss_pred CCCCEEECcccCC---------chhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccC
Confidence 4799999998753 1346788999999999999999999999999999999999999999999999986533
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
...+.||............+|+|.+..... + . ...+|.||+.++.||+.+++|+++|.+|+.+||++||+
T Consensus 121 ~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~--p-----~---~~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~ 190 (357)
T PLN02904 121 VHEPVRYGTSLNHSTDRVHYWRDFIKHYSH--P-----L---SKWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISE 190 (357)
T ss_pred CCCcccccccccccCCCCCCceEEeeeccC--C-----c---ccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334432111111223355555432210 0 0 01368999988999999999999999999999999999
Q ss_pred HhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC----CcceeeecCCCCeEEcCC-CcEEEEe
Q 024369 166 ALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN----TEVDVFFLAYDNWEHMLC-IISFFLY 238 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~----~glqv~~~~~~~W~~V~p-pg~~vVn 238 (268)
+||+++++|.+.+ ..+.+.||++|||||+.++ .|+++|||+|+||++ +||||+.. +|+|++|+| ||++|||
T Consensus 191 ~Lgl~~~~f~~~~-~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd~~GLQV~~~-~g~Wi~V~p~pgalVVN 268 (357)
T PLN02904 191 SLGLEKNYLQEEI-EEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQSSQGLQIMDC-NKNWVCVPYIEGALIVQ 268 (357)
T ss_pred HcCCCHHHHHHHh-cCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecCCCeeeEEeC-CCCEEECCCCCCeEEEE
Confidence 9999999998876 4456789999999998764 589999999999963 78999864 789999999 9999999
Q ss_pred cchhhHhhhcccccccccccc
Q 024369 239 LFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 239 vGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|||+||+||||++ -|..|-
T Consensus 269 iGD~Le~~TNG~~--kSt~HR 287 (357)
T PLN02904 269 LGDQVEVMSNGIY--KSVVHR 287 (357)
T ss_pred ccHHHHHHhCCee--eccCCc
Confidence 9999999999999 888884
No 17
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=3.1e-55 Score=390.35 Aligned_cols=233 Identities=25% Similarity=0.382 Sum_probs=195.8
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
.+.||+|||+.+.++ | .++|.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 49 ~~~iPvIDls~l~~~--~-----~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~ 121 (362)
T PLN02393 49 EINIPVIDLSSLFSD--D-----ARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANS 121 (362)
T ss_pred CCCCCeEECccccCC--C-----hHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcc
Confidence 357999999998652 2 235788999999999999999999999999999999999999999999999999764
Q ss_pred CCCCCcccc-ccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 PATGYRGYQ-RIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGI 163 (268)
Q Consensus 85 ~~~~~~GY~-~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~l 163 (268)
+ ..++||. ..+.+. .+..|++|.|.+... +. ....+|.||+.+++||+++++|+++|.+|+.+||++|
T Consensus 122 ~-~~~~Gy~~~~~~~~-~~~~d~~e~~~~~~~-~~--------~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~l 190 (362)
T PLN02393 122 P-ATYEGYGSRLGVEK-GAILDWSDYYFLHYL-PS--------SLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVL 190 (362)
T ss_pred c-Cccccccccccccc-ccccCchhheeeeec-Cc--------cccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3578994 333321 245689999876521 10 1235789999889999999999999999999999999
Q ss_pred HHHhCCCccccccccccC--ccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC-C
Q 024369 164 ALALGGSPFEFEGVRAGD--AFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC-I 232 (268)
Q Consensus 164 a~~Lgl~~~~f~~~~~~~--~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p-p 232 (268)
+++||+++++|.+.+... +.+.||++|||+|+.++ .|+++|||+|+||+ .+||||+ .+|+|++|+| |
T Consensus 191 a~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~--~~g~W~~V~p~p 268 (362)
T PLN02393 191 SVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPDDNVAGLQVR--RDDAWITVKPVP 268 (362)
T ss_pred HHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeCCCCCcceee--ECCEEEECCCCC
Confidence 999999999998876432 23699999999998764 58999999999996 2689998 4799999999 9
Q ss_pred cEEEEecchhhHhhhcccccccccccc
Q 024369 233 ISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 233 g~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|++||||||+||+||||++ -|..|-
T Consensus 269 galVVNiGD~l~~~Tng~~--kSt~HR 293 (362)
T PLN02393 269 DAFIVNIGDQIQVLSNAIY--KSVEHR 293 (362)
T ss_pred CeEEEEcchhhHhhcCCee--ecccee
Confidence 9999999999999999999 888883
No 18
>PLN02947 oxidoreductase
Probab=100.00 E-value=3.6e-55 Score=390.31 Aligned_cols=229 Identities=21% Similarity=0.301 Sum_probs=187.8
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
.+||+|||+.+.+ +++++++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++....
T Consensus 65 ~~iPvIDls~l~~----------~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~ 134 (374)
T PLN02947 65 LKLPVIDLAELRG----------SNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSAD 134 (374)
T ss_pred CCCCeEECcccCC----------ccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccc
Confidence 4799999998852 235788999999999999999999999999999999999999999999999986543
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
.....||.........+..+|+|.+.+..... ...+|.||+.+++||+.+++|+++|.+|+.+||++|++
T Consensus 135 ~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~----------~~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~ 204 (374)
T PLN02947 135 MRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPL----------SDVLPHWPSSPADLRKVAATYAKATKRLFLELMEAILE 204 (374)
T ss_pred CCCCeeeccccccccccccCceeceeeecCCc----------ccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345664321112234567888776532100 01257999988999999999999999999999999999
Q ss_pred HhCCCc---cccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc-----CCcceeeecCCCCeEEcCC-CcE
Q 024369 166 ALGGSP---FEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN-----NTEVDVFFLAYDNWEHMLC-IIS 234 (268)
Q Consensus 166 ~Lgl~~---~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~-----~~glqv~~~~~~~W~~V~p-pg~ 234 (268)
+||+++ ++|.+.+ ....+.||+||||||+.++ .|+++|||+|+||+ .+||||+. +|+|++|+| ||+
T Consensus 205 ~Lgl~~~~~~~~~~~~-~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~--~g~Wi~V~p~pga 281 (374)
T PLN02947 205 SLGIVKRGSDELLEEF-EAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVEGLQIMH--AGRWVTVEPIPGS 281 (374)
T ss_pred HcCCCccchHHHHHHh-cCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCCCeeEeE--CCEEEeCCCCCCe
Confidence 999974 4555544 3456799999999998775 58999999999996 37899985 799999999 999
Q ss_pred EEEecchhhHhhhcccccccccccc
Q 024369 235 FFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 235 ~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
+||||||+||+||||++ -|..|-
T Consensus 282 ~VVNvGD~Lq~~SNG~~--kS~~HR 304 (374)
T PLN02947 282 FVVNVGDHLEIFSNGRY--KSVLHR 304 (374)
T ss_pred EEEEeCceeeeeeCCEE--eccccc
Confidence 99999999999999999 888884
No 19
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9.4e-55 Score=384.36 Aligned_cols=225 Identities=21% Similarity=0.302 Sum_probs=186.9
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
..||+|||+.. ++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 36 ~~iPvIDls~~-------------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~ 102 (337)
T PLN02639 36 ENVPVIDLGSP-------------DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDD 102 (337)
T ss_pred CCCCeEECCCc-------------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccC
Confidence 47999999963 25689999999999999999999999999999999999999999999999986533
Q ss_pred C-CCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 A-TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIA 164 (268)
Q Consensus 86 ~-~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la 164 (268)
. ...++|...+.. .....+++|.+.+... +. ...+|.||+.++.||+.+++|+++|.+|+.+||++||
T Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-p~---------~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la 171 (337)
T PLN02639 103 PTKTMRLSTSFNVR-KEKVHNWRDYLRLHCY-PL---------DKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAIS 171 (337)
T ss_pred CCCccccccccccc-cCcccCchheEEeeec-CC---------cccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223444433211 1234578888876321 00 0135789998889999999999999999999999999
Q ss_pred HHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC------CcceeeecCCCCeEEcCC-CcEE
Q 024369 165 LALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN------TEVDVFFLAYDNWEHMLC-IISF 235 (268)
Q Consensus 165 ~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~------~glqv~~~~~~~W~~V~p-pg~~ 235 (268)
++|||++++|.+.+ ..+.+.||++|||||+.++ .|+++|||+|+||++ +||||. .+|+|++|+| ||++
T Consensus 172 ~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~--~~g~Wi~V~p~pg~l 248 (337)
T PLN02639 172 ESLGLEKDYIKNVL-GEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVL--KDGKWVAVNPHPGAF 248 (337)
T ss_pred HHcCCCHHHHHHHh-CCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEee--cCCeEEeccCCCCeE
Confidence 99999999998766 3456789999999998764 589999999999962 689986 4799999999 9999
Q ss_pred EEecchhhHhhhcccccccccccc
Q 024369 236 FLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 236 vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
||||||+||+||||++ -|..|-
T Consensus 249 VVNiGD~L~~~TNG~~--kSt~HR 270 (337)
T PLN02639 249 VINIGDQLQALSNGRY--KSVWHR 270 (337)
T ss_pred EEechhHHHHHhCCee--eccCcc
Confidence 9999999999999999 888884
No 20
>PLN02704 flavonol synthase
Probab=100.00 E-value=6.7e-55 Score=385.03 Aligned_cols=228 Identities=22% Similarity=0.343 Sum_probs=188.6
Q ss_pred CCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccC
Q 024369 5 FKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLT 84 (268)
Q Consensus 5 ~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~ 84 (268)
..+||+|||+.. ++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 40 ~~~iPvIDls~~-------------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~ 106 (335)
T PLN02704 40 DPQVPTIDLSDP-------------DEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKP 106 (335)
T ss_pred CCCCCeEECCCc-------------cHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcc
Confidence 457999999964 2357899999999999999999999999999999999999999999999999765
Q ss_pred C-CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 85 P-ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGI 163 (268)
Q Consensus 85 ~-~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~l 163 (268)
. ...++||.....+...+..+++|.+.... .+. .....|.||+.+++||+.+++|+++|.+|+.+||++|
T Consensus 107 ~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~-~p~--------~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~l 177 (335)
T PLN02704 107 PDSKSIEGYGTKLQKEPEGKKAWVDHLFHRI-WPP--------SAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTL 177 (335)
T ss_pred CCCcccccccccccccccCcccceeeeEeee-cCC--------cccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23478997543333344556776553211 110 0123579999889999999999999999999999999
Q ss_pred HHHhCCCccccccccccC-ccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEEcCC-CcE
Q 024369 164 ALALGGSPFEFEGVRAGD-AFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-IIS 234 (268)
Q Consensus 164 a~~Lgl~~~~f~~~~~~~-~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg~ 234 (268)
+++||+++++|.+.+..+ ..+.||++|||||+.++ .|+++|||+|+||++ +||||+ .+|+|++|+| ||+
T Consensus 178 a~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~--~~g~Wi~V~p~pg~ 255 (335)
T PLN02704 178 SLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQVF--RDDHWFDVKYIPNA 255 (335)
T ss_pred HHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCCCCceeEe--ECCEEEeCCCCCCe
Confidence 999999999998766432 34689999999998664 589999999999963 789997 4799999999 999
Q ss_pred EEEecchhhHhhhccccccccccc
Q 024369 235 FFLYLFIYLFLWSKLCLCNFSGAH 258 (268)
Q Consensus 235 ~vVnvGD~l~~~Sn~~l~~~~~~~ 258 (268)
+||||||+||+||||++ -|..|
T Consensus 256 lvVNvGD~L~~~TNg~~--kSt~H 277 (335)
T PLN02704 256 LVIHIGDQIEILSNGKY--KSVLH 277 (335)
T ss_pred EEEEechHHHHHhCCee--ecccc
Confidence 99999999999999999 88888
No 21
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=8.9e-54 Score=373.94 Aligned_cols=232 Identities=30% Similarity=0.422 Sum_probs=193.4
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
.+||+|||+.+... .+.+..++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++....
T Consensus 16 ~~iPvIDls~~~~~--------~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~ 87 (322)
T KOG0143|consen 16 LDIPVIDLSCLDSD--------DPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEP 87 (322)
T ss_pred CCcCeEECCCCCCc--------chhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCC
Confidence 47999999987541 1146788999999999999999999999999999999999999999999999998765
Q ss_pred CCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 86 ATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIAL 165 (268)
Q Consensus 86 ~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~ 165 (268)
. .+.||............+|.+.+.+..... ....++.||+.++.||+.|++|.+++.+|+.+|++++++
T Consensus 88 ~-~~~gY~~~~~~~~~~~~~w~d~~~~~~~p~---------~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~e 157 (322)
T KOG0143|consen 88 G-KYRGYGTSFILSPLKELDWRDYLTLLSAPE---------SSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSE 157 (322)
T ss_pred C-CcccccccccccccccccchhheeeeccCc---------cccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 568887644332224567777776432110 013567999999999999999999999999999999999
Q ss_pred HhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC-CcEEE
Q 024369 166 ALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC-IISFF 236 (268)
Q Consensus 166 ~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p-pg~~v 236 (268)
+||++.+++.+.+.......||+|||||||+++ .|+++|||.|+||+ .+||||.. ++|.|++|+| ||++|
T Consensus 158 slgl~~~~~~~~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~-~dg~Wi~V~P~p~a~v 236 (322)
T KOG0143|consen 158 SLGLEPEYLEKLFGETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFT-KDGKWIDVPPIPGAFV 236 (322)
T ss_pred HcCCChHHHHHhhCCccceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEe-cCCeEEECCCCCCCEE
Confidence 999987666665533345699999999999886 59999999999885 37899886 6899999999 99999
Q ss_pred EecchhhHhhhccccccccccc
Q 024369 237 LYLFIYLFLWSKLCLCNFSGAH 258 (268)
Q Consensus 237 VnvGD~l~~~Sn~~l~~~~~~~ 258 (268)
|||||+||+||||+. -|-.|
T Consensus 237 VNiGD~l~~lSNG~y--kSv~H 256 (322)
T KOG0143|consen 237 VNIGDMLQILSNGRY--KSVLH 256 (322)
T ss_pred EEcccHHhHhhCCcc--cceEE
Confidence 999999999999998 77777
No 22
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=2.3e-53 Score=369.02 Aligned_cols=221 Identities=19% Similarity=0.253 Sum_probs=181.9
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCCC
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA 86 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~ 86 (268)
+||+|||+.+.. +++++++++|++||++||||||+||||+.++++++++++++||+||.++|.. ....
T Consensus 2 ~iPvIDls~~~~----------~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~~~~- 69 (303)
T PLN02403 2 EIPVIDFDQLDG----------EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-ESEI- 69 (303)
T ss_pred CCCeEeCccCCc----------ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-cccc-
Confidence 699999998742 2467899999999999999999999999999999999999999999999962 2111
Q ss_pred CCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 87 TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALA 166 (268)
Q Consensus 87 ~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~~ 166 (268)
..++...+ ..+..|++|.|.++.. +....|.||+.+++||+.+++|+++|.+|+.+||++|+++
T Consensus 70 --~~~~~~~~---~~~~~d~kE~~~~~~~-----------p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 133 (303)
T PLN02403 70 --AKALDNEG---KTSDVDWESSFFIWHR-----------PTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSEN 133 (303)
T ss_pred --cCcccccC---CCCCccHhhhcccccC-----------CccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121111 1235699999988631 1124578998889999999999999999999999999999
Q ss_pred hCCCcccccccccc--CccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC-C-cE
Q 024369 167 LGGSPFEFEGVRAG--DAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC-I-IS 234 (268)
Q Consensus 167 Lgl~~~~f~~~~~~--~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p-p-g~ 234 (268)
||+++++|.+.+.. .+.+.||++||||++.+. .|+++|||+|+||+ .+||||. .+|+|++|+| | |+
T Consensus 134 Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~--~~g~Wi~V~p~p~~~ 211 (303)
T PLN02403 134 LGLDKDYIKEAFSGNKGPSVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFL--KDGKWVPIPPSKNNT 211 (303)
T ss_pred cCCCHHHHHHHhccCCCccceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEec--cCCeEEECCCCCCCE
Confidence 99999999877642 234569999999998664 57899999999995 3689985 5799999999 9 69
Q ss_pred EEEecchhhHhhhcccccccccccc
Q 024369 235 FFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 235 ~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
+||||||+||+||||++ -|..|-
T Consensus 212 lvVNvGD~L~~~Tng~~--~S~~HR 234 (303)
T PLN02403 212 IFVNTGDQLEVLSNGRY--KSTLHR 234 (303)
T ss_pred EEEEehHHHHHHhCCee--ecccce
Confidence 99999999999999999 888884
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.3e-53 Score=374.36 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=178.4
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC-
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP- 85 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~- 85 (268)
+||+|||+.+ .+++|++||+++|||||+||||+.++++++++.+++||+||.|+|+++....
T Consensus 38 ~IPvIDls~~-----------------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~ 100 (341)
T PLN02984 38 DIPVIDMECL-----------------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNS 100 (341)
T ss_pred CCCeEeCcHH-----------------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCC
Confidence 5999999964 2489999999999999999999999999999999999999999999985211
Q ss_pred -CCCCcccccc---ccccc----cCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 024369 86 -ATGYRGYQRI---GENIT----KGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSR 157 (268)
Q Consensus 86 -~~~~~GY~~~---~~~~~----~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~ 157 (268)
....+||... +.+.. .+..|++|.|.++....... ...++. |..+++||+++++|+++|.+|+.
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~-------~~~p~~-~~~~p~fr~~~~~y~~~~~~La~ 172 (341)
T PLN02984 101 PLSYFWGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLL-------QTLSCS-DPKLESFRVLMEEYGKHLTRIAV 172 (341)
T ss_pred CCccccCcccccccccccccccccCCCCeeeEEeCcCCchhhh-------hhcCCC-CCccHHHHHHHHHHHHHHHHHHH
Confidence 1122344322 11111 12469999999864311100 001122 23457899999999999999999
Q ss_pred HHHHHHHHHhCCC--ccccccccccCccccEEEeccCCCCCCC--CCCCCCccccccccC-----CcceeeecCCCCeEE
Q 024369 158 KIMRGIALALGGS--PFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCNN-----TEVDVFFLAYDNWEH 228 (268)
Q Consensus 158 ~Ll~~la~~Lgl~--~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~ 228 (268)
+||++||++||++ +++|.+.+ ..+.+.||++|||||+.++ .|+++|||+|+||++ +||||. .+|+|++
T Consensus 173 ~ll~~lA~~Lgl~~~~~~f~~~~-~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~--~~g~Wv~ 249 (341)
T PLN02984 173 TLFEAIAKTLSLELSGDQKMSYL-SESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVM--KDGEWFN 249 (341)
T ss_pred HHHHHHHHHcCCCcchhHHHHHh-cCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEe--eCCceEE
Confidence 9999999999999 88998776 4556799999999998654 689999999999973 789997 4799999
Q ss_pred cCC-CcEEEEecchhhHhhhcccccccccccc
Q 024369 229 MLC-IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 229 V~p-pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
|+| ||++||||||+||+||||++ -|..|-
T Consensus 250 V~p~pgalVVNiGD~Le~wTNg~~--kSt~HR 279 (341)
T PLN02984 250 VKPIANTLVVNLGDMMQVISDDEY--KSVLHR 279 (341)
T ss_pred CCCCCCeEEEECChhhhhhcCCee--eCCCCc
Confidence 999 99999999999999999999 788774
No 24
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=2.8e-53 Score=373.06 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=182.6
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCCC
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPA 86 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~ 86 (268)
.||+|||+.. +..++|++||+++|||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 26 ~iPvIDls~~----------------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~-- 87 (335)
T PLN02156 26 LIPVIDLTDS----------------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP-- 87 (335)
T ss_pred CCCcccCCCh----------------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC--
Confidence 5999999841 2367999999999999999999999999999999999999999999998643
Q ss_pred CCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024369 87 TGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALA 166 (268)
Q Consensus 87 ~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll~~la~~ 166 (268)
..+||..... ...+..+|+|.|.+....... ....+|.||+.++.||+.+++|+++|.+|+.+||++|+++
T Consensus 88 -~~~Gy~~~~~-~~~~~~~~~e~~~~~~~~~~~-------~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~ 158 (335)
T PLN02156 88 -DPFGYGTKRI-GPNGDVGWLEYILLNANLCLE-------SHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEE 158 (335)
T ss_pred -CCcccCcccc-CCCCCCCceeeEeeecCCccc-------cccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458853211 112345899998876432110 0113688998888999999999999999999999999999
Q ss_pred hCCCc-cccccccc-cCccccEEEeccCCCCCC----CCCCCCCccccccccC-----CcceeeecCCCCeEEcCC-CcE
Q 024369 167 LGGSP-FEFEGVRA-GDAFWVLRIIGYPGLSGA----KDQKKPENNIGWYCNN-----TEVDVFFLAYDNWEHMLC-IIS 234 (268)
Q Consensus 167 Lgl~~-~~f~~~~~-~~~~s~lr~~~YPp~~~~----~~g~~~HtD~g~lT~~-----~glqv~~~~~~~W~~V~p-pg~ 234 (268)
||+++ ++|.+.+. ..+.+.||+||||||+.. ..|+++|||+|+||++ +||||.. ++|+|++|+| ||+
T Consensus 159 LGl~~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~-~~g~Wi~Vpp~pga 237 (335)
T PLN02156 159 LKIEPKEKLSKLVKVKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICV-KDGTWVDVPPDHSS 237 (335)
T ss_pred cCcCcHHHHHHHhcCCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEe-CCCCEEEccCCCCc
Confidence 99964 68877653 234578999999999753 3589999999999963 7899975 4799999999 999
Q ss_pred EEEecchhhHhhhcccccccccccc
Q 024369 235 FFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 235 ~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
+||||||+||+||||++ -|..|-
T Consensus 238 ~VVNiGD~l~~wTNg~~--kSt~HR 260 (335)
T PLN02156 238 FFVLVGDTLQVMTNGRF--KSVKHR 260 (335)
T ss_pred EEEEhHHHHHHHhCCee--ecccee
Confidence 99999999999999999 888883
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=4e-53 Score=368.36 Aligned_cols=221 Identities=24% Similarity=0.275 Sum_probs=179.2
Q ss_pred CCCCCCCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhh
Q 024369 1 MATDFKSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIK 80 (268)
Q Consensus 1 m~~~~~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~ 80 (268)
||. ..||+|||+.+. +.+++|++||+++|||||+||||+.++++++++++++||+||.|+|++
T Consensus 1 ~~~--~~iPvIDls~~~---------------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~ 63 (300)
T PLN02365 1 MAE--VNIPTIDLEEFP---------------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRR 63 (300)
T ss_pred CCc--CCCCEEEChhhH---------------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 553 369999999862 235899999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccccccccccccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 024369 81 IKLTPATGYRGYQRIGENITKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPPNFRALMEEYVNLCTDLSRKIM 160 (268)
Q Consensus 81 ~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~Ll 160 (268)
+.... ..+||.+.+. ..+++|.+.+.....+... ...++.| ..+++||+.+++|+++|.+|+.+||
T Consensus 64 ~~~~~--~~~GY~~~~~-----~~~~~e~~~~~~~~~~~~~------~~~~~~~-~~~~~fr~~~~~y~~~~~~l~~~ll 129 (300)
T PLN02365 64 NTDVI--LGSGYMAPSE-----VNPLYEALGLYDMASPQAV------DTFCSQL-DASPHQRETIKKYAKAIHDLAMDLA 129 (300)
T ss_pred ccCCC--CCCCCCCcCC-----CCCchhheecccccCchhh------hhccccC-CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 75322 3579987543 2367888876532111000 0011223 2467899999999999999999999
Q ss_pred HHHHHHhCC-CccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc------CCcceeeecCCCCeEEcCC
Q 024369 161 RGIALALGG-SPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN------NTEVDVFFLAYDNWEHMLC 231 (268)
Q Consensus 161 ~~la~~Lgl-~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~------~~glqv~~~~~~~W~~V~p 231 (268)
++|+++||+ ++++|.+. .+.||++||||++.+. .|+++|||+|+||+ .+||||+.+.+|+|++|+|
T Consensus 130 ~~la~~Lgl~~~~~f~~~-----~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p 204 (300)
T PLN02365 130 RKLAESLGLVEGDFFQGW-----PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDP 204 (300)
T ss_pred HHHHHHcCCCChHHHhhc-----ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCC
Confidence 999999999 77788653 3689999999997654 58999999999995 2689998755789999999
Q ss_pred -CcEEEEecchhhHhhhcccccccccccc
Q 024369 232 -IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 232 -pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
||++|||+||+||+||||++ -|..|-
T Consensus 205 ~pga~vVNiGD~l~~~TNG~~--~St~HR 231 (300)
T PLN02365 205 LPGTLLVNLGDVATAWSNGRL--CNVKHR 231 (300)
T ss_pred CCCeEEEEhhHHHHHHhCCce--ecccce
Confidence 99999999999999999999 888884
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.1e-42 Score=293.59 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=149.6
Q ss_pred HHHHHHhcC-CCHHHHhhhccCCC-CCCccccccccc-c-ccCCCCcchhhhcccccccCccccCCCCCCCCCCCCCCCc
Q 024369 64 KNITQKFFD-LPYEEKIKIKLTPA-TGYRGYQRIGEN-I-TKGIPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLNPP 139 (268)
Q Consensus 64 ~~~~~~fF~-lp~e~K~~~~~~~~-~~~~GY~~~~~~-~-~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~~~ 139 (268)
.+.+++||+ ||.|+|+++..... ..++||.....+ . .....||+|.|.+... +.. ...+|.||+.++
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~-p~~--------~~~~n~wP~~~~ 72 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTF-PLS--------RRNPSHWPDFPP 72 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeec-Ccc--------ccchhhCCCCcH
Confidence 567999997 99999999977542 247899543221 1 1234699999987421 110 124689999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccCccccEEEeccCCCCCCC--CCCCCCcccccccc-----
Q 024369 140 NFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAK--DQKKPENNIGWYCN----- 212 (268)
Q Consensus 140 ~fr~~~~~y~~~~~~l~~~Ll~~la~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~--~g~~~HtD~g~lT~----- 212 (268)
.||+.+++|+++|.+|+.+||++|+++||+++++|.+.+ .+..+.||++|||||+.++ .|+++|||+|+||+
T Consensus 73 ~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~ 151 (262)
T PLN03001 73 DYREVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAV-GDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDD 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCC
Confidence 999999999999999999999999999999999998876 3455789999999998764 58999999999996
Q ss_pred CCcceeeecCCCCeEEcCC-CcEEEEecchhhHhhhcccccccccccc
Q 024369 213 NTEVDVFFLAYDNWEHMLC-IISFFLYLFIYLFLWSKLCLCNFSGAHT 259 (268)
Q Consensus 213 ~~glqv~~~~~~~W~~V~p-pg~~vVnvGD~l~~~Sn~~l~~~~~~~~ 259 (268)
.+||||+ .+|+|++|+| ||++||||||+||+||||++ -|..|-
T Consensus 152 v~GLqV~--~~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~--~S~~HR 195 (262)
T PLN03001 152 VEGLQLL--KDAEWLMVPPISDAILIIIADQTEIITNGNY--KSAQHR 195 (262)
T ss_pred CCceEEe--eCCeEEECCCCCCcEEEEccHHHHHHhCCcc--ccccce
Confidence 3789997 4789999999 99999999999999999999 888884
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.94 E-value=3.5e-27 Score=177.94 Aligned_cols=115 Identities=40% Similarity=0.680 Sum_probs=92.9
Q ss_pred CcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCCCC
Q 024369 8 IPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTPAT 87 (268)
Q Consensus 8 iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~ 87 (268)
||||||+.. .+++++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... .
T Consensus 1 iPvIDls~~-----------~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~--~ 67 (116)
T PF14226_consen 1 IPVIDLSPD-----------PADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARS--P 67 (116)
T ss_dssp --EEEHGGC-----------HHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCC--T
T ss_pred CCeEECCCC-----------CccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCC--C
Confidence 799999981 246789999999999999999999999999999999999999999999999999554 3
Q ss_pred CCccccccccccccC-CCCcchhhhcccccccCccccCCCCCCCCCCCCCC
Q 024369 88 GYRGYQRIGENITKG-IPDMHEAIDCYKEIQEGMYGALGKTMEGCNQWPLN 137 (268)
Q Consensus 88 ~~~GY~~~~~~~~~~-~~d~~E~f~~~~~~~~~~~~~~~~~~~~~~~wP~~ 137 (268)
.++||.+.+.+...+ ..|++|+|+++...+.+.+. ...+.++|+||++
T Consensus 68 ~~~Gy~~~~~~~~~~~~~d~~E~~~~~~~~~~~~p~--~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 68 SYRGYSPPGSESTDGGKPDWKESFNIGPDLPEDDPA--YPPLYGPNIWPDE 116 (116)
T ss_dssp TCSEEEESEEECCTTCCCCSEEEEEEECC-STTCHH--TGCTS-GGGS-TT
T ss_pred CCcccccCCccccCCCCCCceEEeEEECCCCccccc--cccccCCCCCCCC
Confidence 789999988766554 88999999999875433221 3356789999973
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.81 E-value=1.7e-19 Score=135.85 Aligned_cols=80 Identities=24% Similarity=0.568 Sum_probs=69.2
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCCHHHHhhhccCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLPYEEKIKIKLTP 85 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~ 85 (268)
.+||+|||+.+.++ ++.+.+++++|++||++||||||+||||+.++++++++.+++||+||.++|+++...+
T Consensus 36 ~~iPvIDls~~~~~--------~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~ 107 (120)
T PLN03176 36 NEIPVISIAGIDDG--------GEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSG 107 (120)
T ss_pred CCCCeEECccccCC--------chHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCC
Confidence 37999999998642 2346778999999999999999999999999999999999999999999999997765
Q ss_pred CCCCccccc
Q 024369 86 ATGYRGYQR 94 (268)
Q Consensus 86 ~~~~~GY~~ 94 (268)
. ...||..
T Consensus 108 ~-~~~gy~~ 115 (120)
T PLN03176 108 G-KKGGFIV 115 (120)
T ss_pred C-ccCCcch
Confidence 3 4568853
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.45 E-value=3.4e-14 Score=103.58 Aligned_cols=70 Identities=16% Similarity=0.045 Sum_probs=52.7
Q ss_pred ccEEEeccCCCCCCCCCCCCCccc--ccccc-----CCcceeeecCCCCeEEcCC-CcEEEEecchhhHhhhcccccccc
Q 024369 184 WVLRIIGYPGLSGAKDQKKPENNI--GWYCN-----NTEVDVFFLAYDNWEHMLC-IISFFLYLFIYLFLWSKLCLCNFS 255 (268)
Q Consensus 184 s~lr~~~YPp~~~~~~g~~~HtD~--g~lT~-----~~glqv~~~~~~~W~~V~p-pg~~vVnvGD~l~~~Sn~~l~~~~ 255 (268)
+.||+++||| +....++++|+|. +++|+ .+|||+... ++|+.|++ |++++||+||+|++||||++ -+
T Consensus 2 ~~~~~~~Y~~-~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~~--~~~~~v~~~~~~~~v~~G~~l~~~t~g~~--~~ 76 (98)
T PF03171_consen 2 SQLRLNRYPP-PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRDD--GEWVDVPPPPGGFIVNFGDALEILTNGRY--PA 76 (98)
T ss_dssp -EEEEEEE-S-CCGCEEEEEEEES--SSEEEEEETSTS-EEEEET--TEEEE----TTCEEEEEBHHHHHHTTTSS----
T ss_pred CEEEEEECCC-cccCCceeCCCcCCCCeEEEEecccchheecccc--ccccCccCccceeeeeceeeeecccCCcc--CC
Confidence 4799999999 4445689999999 99996 367888864 59999999 99999999999999999998 56
Q ss_pred ccc
Q 024369 256 GAH 258 (268)
Q Consensus 256 ~~~ 258 (268)
..|
T Consensus 77 ~~H 79 (98)
T PF03171_consen 77 TLH 79 (98)
T ss_dssp --E
T ss_pred cee
Confidence 666
No 30
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=82.14 E-value=1.6 Score=39.74 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDL 73 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 73 (268)
..||+||++.+.++ ...++..+.+++.|+++|.|. ||.+......+..++|.+.
T Consensus 48 ~~IP~i~f~di~~~-------------~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~ 101 (416)
T PF07350_consen 48 SIIPEIDFADIENG-------------GVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKA 101 (416)
T ss_dssp -SS-EEEHHHHHCT----------------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCceeeHHHHhCC-------------CCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHh
Confidence 46999999998642 356888889999999999886 8888888888777777643
No 31
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=74.07 E-value=6.3 Score=31.76 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=29.1
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.||++++... +.+++++++.+++++...+.|.|||+-
T Consensus 120 ~v~v~~~~~~-------------g~~~la~~~~~~l~~~~~vll~nHGv~ 156 (184)
T PRK08333 120 KIPILPFRPA-------------GSVELAEQVAEAMKEYDAVIMERHGIV 156 (184)
T ss_pred CEeeecCCCC-------------CcHHHHHHHHHHhccCCEEEEcCCCCE
Confidence 5788877642 125788999999998889999999973
No 32
>PRK08130 putative aldolase; Validated
Probab=71.65 E-value=7.7 Score=32.04 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++++.+++++...+.+.|||+-
T Consensus 139 ~~la~~~~~~l~~~~~vll~nHGvi 163 (213)
T PRK08130 139 PAIAEALAGLAARYRAVLLANHGPV 163 (213)
T ss_pred HHHHHHHHHHhccCCEEEEcCCCCe
Confidence 5789999999999999999999973
No 33
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=71.21 E-value=20 Score=28.35 Aligned_cols=75 Identities=9% Similarity=-0.056 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCccccccccccCccccEEEeccCCCCCCCCCCCCCcccc--------cccc-------CCcceee
Q 024369 155 LSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGYPGLSGAKDQKKPENNIG--------WYCN-------NTEVDVF 219 (268)
Q Consensus 155 l~~~Ll~~la~~Lgl~~~~f~~~~~~~~~s~lr~~~YPp~~~~~~g~~~HtD~g--------~lT~-------~~glqv~ 219 (268)
+...|.+.++..++++.. +. .....+++.+|.+.. ...+|.|.. .+|. ..|=++.
T Consensus 60 ~~~~l~~~i~~~~~~~~~-~~-----~~~~~~~~~~Y~~g~----~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~ 129 (178)
T smart00702 60 VIERIRQRLADFLGLLRG-LP-----LSAEDAQVARYGPGG----HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELV 129 (178)
T ss_pred HHHHHHHHHHHHHCCCch-hh-----ccCcceEEEEECCCC----cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEE
Confidence 444555666666666421 11 112358899998843 348899976 2442 1233333
Q ss_pred ecCCC--CeEEcCC-CcEEEEec
Q 024369 220 FLAYD--NWEHMLC-IISFFLYL 239 (268)
Q Consensus 220 ~~~~~--~W~~V~p-pg~~vVnv 239 (268)
.+..+ .-..|.| +|.+||.-
T Consensus 130 f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 130 FPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred ecCCCCccceEEeCCCCcEEEEe
Confidence 33333 3568999 99988865
No 34
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=64.56 E-value=12 Score=31.14 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++.+.+++.+...+.|.|||+-
T Consensus 139 ~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 139 PEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred HHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 6889999999999999999999973
No 35
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=63.25 E-value=13 Score=33.38 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFD 72 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 72 (268)
..+|.||++.+... .+...++.+++.++|+..+.+-.++.+ .+.+.++.|-.
T Consensus 108 ~~~~~~d~~~~~~~------------~~~~~~~~~~l~~~G~v~~rg~~~~~~---~~~~~~~~~G~ 159 (366)
T TIGR02409 108 LSLPKFDHEAVMKD------------DSVLLDWLSAVRDVGIAVLKGAPTKPG---AVEKLGKRIGF 159 (366)
T ss_pred ccCCceeHHHHhCC------------HHHHHHHHHHHHhccEEEEeCCCCCHH---HHHHHHHHhcc
Confidence 46788898886531 356788999999999999999888664 34455555543
No 36
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=60.22 E-value=11 Score=31.07 Aligned_cols=55 Identities=13% Similarity=-0.054 Sum_probs=34.3
Q ss_pred cEEEeccCCCCCC-CC--CCCCCccccccccC---CcceeeecCCCCeEEcCC-CcEEEEecchh
Q 024369 185 VLRIIGYPGLSGA-KD--QKKPENNIGWYCNN---TEVDVFFLAYDNWEHMLC-IISFFLYLFIY 242 (268)
Q Consensus 185 ~lr~~~YPp~~~~-~~--g~~~HtD~g~lT~~---~glqv~~~~~~~W~~V~p-pg~~vVnvGD~ 242 (268)
.+|.+||.|.... +. .+..+ |.+++. +-..+...+.|.=+.||| =|+.++|+||-
T Consensus 91 ~~~~~H~Hp~ade~E~y~vi~G~---g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 91 AMRELHYHPNADEPEIYYVLKGE---GRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDE 152 (209)
T ss_pred cccccccCCCCCcccEEEEEecc---EEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCC
Confidence 6899999776544 21 11111 223321 123343345688899999 99999999985
No 37
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=59.76 E-value=16 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++++.+++.+.-.+.+.|||+-
T Consensus 134 ~~la~~~~~~l~~~~~vLl~nHGv~ 158 (215)
T PRK08087 134 RELSEHVALALKNRKATLLQHHGLI 158 (215)
T ss_pred HHHHHHHHHHhCcCCEEEecCCCCE
Confidence 5788899999988889999999973
No 38
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=58.78 E-value=20 Score=28.71 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGI 55 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi 55 (268)
+++++.+.+++.+.-.+.|.|||+
T Consensus 126 ~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 126 GELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred HHHHHHHHHHHhhCCEEEEcCCCc
Confidence 578899999999999999999997
No 39
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=57.47 E-value=33 Score=27.31 Aligned_cols=53 Identities=6% Similarity=-0.342 Sum_probs=34.5
Q ss_pred EEEeccCCCCCCCCCCCCCcccccccc--------CCcc---eeeec-CCCCeEEcCC-CcEEEEecchh
Q 024369 186 LRIIGYPGLSGAKDQKKPENNIGWYCN--------NTEV---DVFFL-AYDNWEHMLC-IISFFLYLFIY 242 (268)
Q Consensus 186 lr~~~YPp~~~~~~g~~~HtD~g~lT~--------~~gl---qv~~~-~~~~W~~V~p-pg~~vVnvGD~ 242 (268)
.=+|+|++- .+++.|.|-..+.. ++.- .+... .++..+.+.- +|+++|.-|+.
T Consensus 97 ~LvN~Y~~G----d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 97 CLVNRYAPG----ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred EEEEeecCC----CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 458999876 25899999645531 1111 11111 2455888888 99999999984
No 40
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=56.66 E-value=19 Score=31.12 Aligned_cols=36 Identities=6% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCCH--HHHHHHHHHH
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIPE--SLINDVKNIT 67 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~~--~~~~~~~~~~ 67 (268)
.++++.+.+++++...+.|.|||+-. +.+++++..+
T Consensus 191 ~eLa~~v~~~l~~~~avLL~nHGvv~~G~~l~eA~~~~ 228 (274)
T PRK03634 191 DEIGQATAEKMQKHDLVLWPKHGVFGSGPTLDEAFGLI 228 (274)
T ss_pred HHHHHHHHHHhccCCEEEEcCCCCeEecCCHHHHHHHH
Confidence 57889999999988999999999742 3344444433
No 41
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=56.27 E-value=8.4 Score=30.81 Aligned_cols=37 Identities=14% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHH-hcceEEEEcCCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACK-EAGFFYVKGHGI 55 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~-~~GFf~l~nhGi 55 (268)
..||+|+..... ..+++++|.++++ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~-------------~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPG-------------SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTT-------------CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeecccccc-------------chhhhhhhhhhhcCCceEEeecCCce
Confidence 468888887632 1467899999999 889999999996
No 42
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=55.94 E-value=18 Score=29.96 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++.+.+++.+...+.|.|||+-
T Consensus 136 ~~la~~v~~~l~~~~~vll~nHGv~ 160 (214)
T PRK06833 136 KELAENAFEAMEDRRAVLLANHGLL 160 (214)
T ss_pred HHHHHHHHHHhCcCCEEEECCCCCE
Confidence 5788999999999999999999973
No 43
>PRK06755 hypothetical protein; Validated
Probab=54.02 E-value=15 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=27.4
Q ss_pred CCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 7 SIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 7 ~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.||+|.+..- ..+++++.+.+++++...+.|.|||+-
T Consensus 136 ~IPiv~~~~~-------------~~~~la~~~~~~~~~~~avLl~~HGv~ 172 (209)
T PRK06755 136 TIPIVEDEKK-------------FADLLENNVPNFIEGGGVVLVHNYGMI 172 (209)
T ss_pred EEEEEeCCCc-------------hhHHHHHHHHhhccCCCEEEEcCCCeE
Confidence 4788877642 125677777788888888999999973
No 44
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=52.20 E-value=23 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++.+.+++++..-+.|.|||+-
T Consensus 189 ~eLA~~v~~~l~~~~avLL~nHGvv 213 (270)
T TIGR02624 189 NEIGEATAEKMKEHRLVLWPHHGIF 213 (270)
T ss_pred HHHHHHHHHHhccCCEEEEcCCCCe
Confidence 5899999999999999999999973
No 45
>PRK06357 hypothetical protein; Provisional
Probab=50.54 E-value=34 Score=28.35 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhc------ceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEA------GFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~------GFf~l~nhGi~ 56 (268)
+++++.+.+++++. ..+.|.|||+-
T Consensus 142 ~ela~~v~~~l~~~~~~~~~~~vLl~nHGvv 172 (216)
T PRK06357 142 PELAEIVRKHLIELGDKAVPSAFLLNSHGIV 172 (216)
T ss_pred HHHHHHHHHHHhhcCcccCCCEEEECCCCCe
Confidence 57888888888765 48888999973
No 46
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=48.38 E-value=63 Score=27.54 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcce--EEEE-cCCCCHHHHHHHHHHHHHhcC
Q 024369 31 VSQVVKQLDKACKEAGF--FYVK-GHGIPESLINDVKNITQKFFD 72 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GF--f~l~-nhGi~~~~~~~~~~~~~~fF~ 72 (268)
-......+.+++..+|| |+++ +||=....+..+.+..+.-+.
T Consensus 88 ~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 88 LIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 45677889999999999 5555 488777777777666555443
No 47
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=47.51 E-value=26 Score=29.08 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHHHHH--HhcceEEEEcCCCCH--HHHHHHHHH
Q 024369 32 SQVVKQLDKAC--KEAGFFYVKGHGIPE--SLINDVKNI 66 (268)
Q Consensus 32 ~~~~~~l~~A~--~~~GFf~l~nhGi~~--~~~~~~~~~ 66 (268)
+++++++.+++ .+...+.|.|||+-. +.+++++..
T Consensus 142 ~ela~~i~~~l~~~~~~~vll~nHG~~~~G~~~~eA~~~ 180 (221)
T PRK06557 142 EAIGKGIVETLKGGRSPAVLMQNHGVFTIGKDAEDAVKA 180 (221)
T ss_pred HHHHHHHHHHhCcCCCCEEEECCCCceEEcCCHHHHHHH
Confidence 57788999998 778889999999742 234444443
No 48
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=46.84 E-value=30 Score=28.59 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGI 55 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi 55 (268)
.++++.+.+++.+...+.|.|||+
T Consensus 133 ~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 133 TKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred HHHHHHHHHHhhhCCEEehhcCCC
Confidence 578888899988889999999997
No 49
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=46.70 E-value=38 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDL 73 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 73 (268)
.+..++|++|+.++|+..+.|-.+.. ++..+.++.|-.+
T Consensus 27 ~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 27 DNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 36688999999999999999988875 4555667777654
No 50
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=45.71 E-value=40 Score=26.90 Aligned_cols=62 Identities=13% Similarity=-0.133 Sum_probs=37.4
Q ss_pred cEEEeccCCCCCCCCCCCCCcccccc-------cc-CCc---ceeeec-CCCCeEEcCC-CcEEEEecchhhHhhhcccc
Q 024369 185 VLRIIGYPGLSGAKDQKKPENNIGWY-------CN-NTE---VDVFFL-AYDNWEHMLC-IISFFLYLFIYLFLWSKLCL 251 (268)
Q Consensus 185 ~lr~~~YPp~~~~~~g~~~HtD~g~l-------T~-~~g---lqv~~~-~~~~W~~V~p-pg~~vVnvGD~l~~~Sn~~l 251 (268)
..-+|+|++.. ++++|.|--.+ ++ +++ ..+... ..+..+.|.- +|+++|.-|++=..| -+-.
T Consensus 98 ~~liN~Y~~g~----~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~-H~I~ 172 (194)
T PF13532_consen 98 QCLINYYRDGS----GIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDW-HGIP 172 (194)
T ss_dssp EEEEEEESSTT-----EEEE---TTC-CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHE-EEE-
T ss_pred EEEEEecCCCC----CcCCCCCcccccCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhhe-eEcc
Confidence 45689998833 68999997744 11 111 112221 2578999998 999999999998888 5443
No 51
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=43.05 E-value=35 Score=29.63 Aligned_cols=31 Identities=19% Similarity=0.474 Sum_probs=25.7
Q ss_pred HHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHH
Q 024369 37 QLDKACKEAGFFYVKGHGIPESLINDVKNITQK 69 (268)
Q Consensus 37 ~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~ 69 (268)
...+++++.|||.|.| +|..++..+.+....
T Consensus 16 ~Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 16 TALRALEDLGYYCVDN--LPPSLLPQLIELLAQ 46 (284)
T ss_pred HHHHHHHhcCeeEEcC--CcHHHHHHHHHHHHh
Confidence 3468899999999998 888899988877653
No 52
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=41.60 E-value=45 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHH---hcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACK---EAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~---~~GFf~l~nhGi~ 56 (268)
+++++.+.++++ +...+.|.|||+-
T Consensus 137 ~ela~~~~~~l~~~~~~~avll~nHGv~ 164 (193)
T TIGR03328 137 ARLADSVAPYLEAYPDVPGVLIRGHGLY 164 (193)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCcce
Confidence 678899999996 4788999999973
No 53
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=41.14 E-value=8.7 Score=27.14 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=13.0
Q ss_pred CCCeEEcC-----C-CcEEEEecc
Q 024369 223 YDNWEHML-----C-IISFFLYLF 240 (268)
Q Consensus 223 ~~~W~~V~-----p-pg~~vVnvG 240 (268)
++....++ | +|.+||.-+
T Consensus 53 ~~~~~~~~~~~~~p~~g~~v~F~~ 76 (100)
T PF13640_consen 53 DDVSREVEDFDIVPKPGRLVIFPS 76 (100)
T ss_dssp SSTCEEEGGGSEE-BTTEEEEEES
T ss_pred CCcceEEEeccccCCCCEEEEEeC
Confidence 45566666 9 999999887
No 54
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=40.55 E-value=29 Score=28.79 Aligned_cols=68 Identities=13% Similarity=-0.113 Sum_probs=41.2
Q ss_pred EEEeccCCCCCCCCCCCCCccccccc-------cCCcc----eeeec-CCCCeEEcCC-CcEEEEecchhhHhhhccccc
Q 024369 186 LRIIGYPGLSGAKDQKKPENNIGWYC-------NNTEV----DVFFL-AYDNWEHMLC-IISFFLYLFIYLFLWSKLCLC 252 (268)
Q Consensus 186 lr~~~YPp~~~~~~g~~~HtD~g~lT-------~~~gl----qv~~~-~~~~W~~V~p-pg~~vVnvGD~l~~~Sn~~l~ 252 (268)
.=+|+|.+-. +++.|.|-.... +.-|. .+... .++.++.+.- .|+++|.-|++ +.|=-+-..
T Consensus 118 ~LvN~Y~~G~----~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s-r~~~HgVp~ 192 (213)
T PRK15401 118 CLINRYAPGA----KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS-RLRYHGILP 192 (213)
T ss_pred EEEEeccCcC----ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchH-hheeccCCc
Confidence 4489998763 689999953221 11121 12211 2456899999 99999999997 665554433
Q ss_pred cccccc
Q 024369 253 NFSGAH 258 (268)
Q Consensus 253 ~~~~~~ 258 (268)
--.+.|
T Consensus 193 ~~~~~~ 198 (213)
T PRK15401 193 LKAGEH 198 (213)
T ss_pred CCCCcC
Confidence 333333
No 55
>PF03863 Phage_mat-A: Phage maturation protein; InterPro: IPR005563 This entry is represented by Bacteriophage MS2, Orf: MS2g1, the assembly/maturation protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The single-stranded RNA genome of bacteriophage MS2 is 3,569 nt long and contains 4 genes. Their products are necessary for phage maturation, encapsidation, lysis of the host, and phage RNA replication, respectively. The maturation protein is required for the typical attachment of the phage to the side of the bacterial pili. It accompanies the viral DNA into the cell.; GO: 0046718 entry of virus into host cell
Probab=40.37 E-value=16 Score=33.19 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred cccccccCCcceeeecCCCCeEEcCC--CcEEEEecchhhHhhhc
Q 024369 206 NIGWYCNNTEVDVFFLAYDNWEHMLC--IISFFLYLFIYLFLWSK 248 (268)
Q Consensus 206 D~g~lT~~~glqv~~~~~~~W~~V~p--pg~~vVnvGD~l~~~Sn 248 (268)
|-|.|-....+.+..|.+-.|.-+|. -=.-+||+||+||.+++
T Consensus 274 ~~~~l~~~s~lg~lNP~~~aWEl~P~SFVVDWf~nvGdmle~~~~ 318 (400)
T PF03863_consen 274 DNGRLRPASALGLLNPLETAWELTPYSFVVDWFLNVGDMLEQLQL 318 (400)
T ss_pred cCCccccchhhcccCcccceEEeccceeeeehhccHHHHHHhhcc
Confidence 33444444566777777888998876 55667899999999955
No 56
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=40.25 E-value=40 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCccccccccccCccccEEE
Q 024369 156 SRKIMRGIALALGGSPFEFEGVRAGDAFWVLRI 188 (268)
Q Consensus 156 ~~~Ll~~la~~Lgl~~~~f~~~~~~~~~s~lr~ 188 (268)
+.+|++.+++.|+++...|.+.-...+.-++|+
T Consensus 19 G~~l~~~la~~l~l~s~~F~~i~V~g~avTFrv 51 (91)
T PF11548_consen 19 GSRLMEKLAELLHLPSSSFINISVVGPAVTFRV 51 (91)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccceeeeecCceEEEEe
Confidence 678999999999999998876533344445555
No 57
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=40.07 E-value=1.7e+02 Score=25.83 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=14.5
Q ss_pred cEEEeccCCCCCCCCCCCCCcccc
Q 024369 185 VLRIIGYPGLSGAKDQKKPENNIG 208 (268)
Q Consensus 185 ~lr~~~YPp~~~~~~g~~~HtD~g 208 (268)
.|++++|-+...- .+|.|+-
T Consensus 133 ~lQVlrY~~Gq~Y----~~H~D~~ 152 (310)
T PLN00052 133 NIQILRYEHGQKY----EPHFDYF 152 (310)
T ss_pred ceEEEecCCCCCC----CCCCCcc
Confidence 4788899876544 7888864
No 58
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=39.78 E-value=1.4e+02 Score=25.08 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=13.9
Q ss_pred EEcCC-CcEEEEecchhhH
Q 024369 227 EHMLC-IISFFLYLFIYLF 244 (268)
Q Consensus 227 ~~V~p-pg~~vVnvGD~l~ 244 (268)
..|+| .|.+||.-...+.
T Consensus 141 ~~Vkp~aG~~vlfps~~lH 159 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLH 159 (226)
T ss_pred EEEecCCCeEEEECCCCce
Confidence 57888 9999998765543
No 59
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=38.72 E-value=69 Score=26.77 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcceE---EEEcCCCCHHHHHHHHHH
Q 024369 31 VSQVVKQLDKACKEAGFF---YVKGHGIPESLINDVKNI 66 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GFf---~l~nhGi~~~~~~~~~~~ 66 (268)
-.++...+.+.+.++||= .|.+||=....++.+.+.
T Consensus 84 ~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~ 122 (237)
T PF02633_consen 84 LIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARE 122 (237)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHH
Confidence 457888889999999984 335788765555555443
No 60
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=37.39 E-value=1.2e+02 Score=23.28 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 31 VSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
....++++.+.+++..++++.+ +|++...+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 4578899999999998888876 58998877777766543
No 61
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=36.41 E-value=56 Score=20.25 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Q 024369 33 QVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDLP 74 (268)
Q Consensus 33 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lp 74 (268)
+.+..|...+...||....-.|+-.....++...-++.+.|+
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 457889999999999955556777777777777777777775
No 62
>PRK05834 hypothetical protein; Provisional
Probab=36.12 E-value=60 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcc--eEEEEcCCC
Q 024369 33 QVVKQLDKACKEAG--FFYVKGHGI 55 (268)
Q Consensus 33 ~~~~~l~~A~~~~G--Ff~l~nhGi 55 (268)
..++.+.+++++.. .+.|.|||+
T Consensus 136 ~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 136 RADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred hHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 45677888888755 899999996
No 63
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=35.47 E-value=33 Score=23.45 Aligned_cols=21 Identities=33% Similarity=0.573 Sum_probs=17.4
Q ss_pred HHHHHHHHhcceEEEEcCCCC
Q 024369 36 KQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 36 ~~l~~A~~~~GFf~l~nhGi~ 56 (268)
+.|..-|.+-||+||..|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 578899999999999877553
No 64
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=33.38 E-value=39 Score=27.64 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCCcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 6 KSIPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 6 ~~iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
..||++++..... ..+++++.+.+++.+.-.+.+.|||+-
T Consensus 121 ~~ip~~~~~~~~~-----------~~~~la~~~~~~l~~~~~vll~nHG~~ 160 (209)
T cd00398 121 GDIPCTPYMTPET-----------GEDEIGTQRALGFPNSKAVLLRNHGLF 160 (209)
T ss_pred CCeeecCCcCCCc-----------cHHHHHHHHhcCCCcCCEEEEcCCCCe
Confidence 3578887765311 124667777888888889999999973
No 65
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=33.14 E-value=77 Score=28.47 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=35.5
Q ss_pred CcEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcC
Q 024369 8 IPIIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFD 72 (268)
Q Consensus 8 iPvIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 72 (268)
+|.+|+..+... ..+...++.+++.++|+..+.|-+++.+. +.+.+++|-.
T Consensus 101 ~~~~~~~~~~~~-----------~d~~l~~~l~~l~~~G~v~~~g~~~~~~~---~~~~a~riG~ 151 (362)
T TIGR02410 101 DPSVHFKTTYDH-----------TDSTLKSFSKNIYKYGFTFVDNVPVTPEA---TEKLCERISI 151 (362)
T ss_pred CCceeHHHHhcc-----------CHHHHHHHHHHHHhhCEEEEcCCCCCHHH---HHHHHHHhcc
Confidence 466777665431 03568899999999999999998887654 3445556543
No 66
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=31.42 E-value=97 Score=22.96 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 32 SQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
.+.+....+.|.++|-=.|++ .|.+.+.++.+.+++++
T Consensus 77 p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 456677777777789999886 58888888887776654
No 67
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=30.42 E-value=89 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccc
Q 024369 150 NLCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 150 ~~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
++-.+|+..|.+++++.||.+++..
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 3556888899999999999987643
No 68
>PRK07490 hypothetical protein; Provisional
Probab=30.16 E-value=75 Score=26.86 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++.+.+++.+.-.+.|.|||+-
T Consensus 146 ~ela~~v~~~l~~~~avlL~nHG~v 170 (245)
T PRK07490 146 EEEGERLAGLLGDKRRLLMGNHGVL 170 (245)
T ss_pred HHHHHHHHHHhCcCCEEEECCCCcE
Confidence 5788999999999999999999973
No 69
>PRK15331 chaperone protein SicA; Provisional
Probab=29.98 E-value=48 Score=26.30 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcCC
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFDL 73 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~l 73 (268)
+.+++++.|.+|+.+ |-=.-.-|||+++.++.++..+..||..
T Consensus 8 ~~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 8 SEERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 346788999999987 4222235899999999999999999964
No 70
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=29.35 E-value=1.8e+02 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
.....+++|.+.+++.-++++.+ .|++.+.+.++....+.
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45678899999999988887776 58998888877776653
No 71
>PF11771 DUF3314: Protein of unknown function (DUF3314) ; InterPro: IPR021748 This small family contains human, mouse and fish members but the function is not known.
Probab=29.20 E-value=68 Score=24.85 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=29.2
Q ss_pred CCCcccccccc---------------CCcceeeec-CCCCeEEcCC-CcE------EE--EecchhhHhhhcc
Q 024369 202 KPENNIGWYCN---------------NTEVDVFFL-AYDNWEHMLC-IIS------FF--LYLFIYLFLWSKL 249 (268)
Q Consensus 202 ~~HtD~g~lT~---------------~~glqv~~~-~~~~W~~V~p-pg~------~v--VnvGD~l~~~Sn~ 249 (268)
+.|||+-+||- ..+.|++.. .=|+|+.+.| |.+ ++ +=.||.=|.++=|
T Consensus 75 ~~~~eyYFLCy~Dt~~~a~~~~~~~a~s~~~~~rlWSIGrWv~~~Pd~~~dDl~sWiLC~~P~gdyqqLL~iG 147 (164)
T PF11771_consen 75 SSHTEYYFLCYRDTWEPADDTGQSPANSCPQIQRLWSIGRWVQLGPDPATDDLYSWILCPQPPGDYQQLLTIG 147 (164)
T ss_pred cccceEEEEEEccccccccccccCCcccCcceeEEEEecceEEcCCCcCcccceeEEEcCCCccchhhheeec
Confidence 48999999862 122334333 2599999999 764 11 3456666665544
No 72
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=29.11 E-value=1.6e+02 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHH
Q 024369 31 VSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQ 68 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~ 68 (268)
..+.+++|.+.+.++-.++|++ +|++...++++.+..+
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 4678999999999988777764 7999988888877654
No 73
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=28.21 E-value=1.7e+02 Score=23.29 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 31 VSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
..+.+++|.+.+.++-.++|.+ .|++...++++.+..+.
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 4678899999999998887775 68998888888777653
No 74
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.01 E-value=96 Score=19.65 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccc
Q 024369 151 LCTDLSRKIMRGIALALGGSPFEFE 175 (268)
Q Consensus 151 ~~~~l~~~Ll~~la~~Lgl~~~~f~ 175 (268)
.-++|+..|.+++++.+|.|++.+.
T Consensus 16 qK~~L~~~it~a~~~~~~~p~~~v~ 40 (60)
T PRK02289 16 QKNALAREVTEVVSRIAKAPKEAIH 40 (60)
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEE
Confidence 5568889999999999999876543
No 75
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=26.84 E-value=92 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.492 Sum_probs=23.5
Q ss_pred HHHHHhcceEEEEcCCCCHHHHHHHHHHHH
Q 024369 39 DKACKEAGFFYVKGHGIPESLINDVKNITQ 68 (268)
Q Consensus 39 ~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~ 68 (268)
.+++++.|||.+.| +|++++.++.+.+.
T Consensus 18 l~~lEDlGyycvDN--LPp~Llp~~~~~~~ 45 (286)
T COG1660 18 LRVLEDLGYYCVDN--LPPQLLPKLADLML 45 (286)
T ss_pred HHHHHhcCeeeecC--CCHHHHHHHHHHHh
Confidence 46788999999988 88999998888665
No 76
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=26.30 E-value=1.5e+02 Score=24.97 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCCc-EEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHH
Q 024369 4 DFKSIP-IIDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPES 58 (268)
Q Consensus 4 ~~~~iP-vIDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~ 58 (268)
+|...| +||++.+... . ......|.+.|+++|+.-+--.|-..+
T Consensus 43 ~f~~aPvVldl~~l~~~----------~-~~dl~~L~~~l~~~gl~~vGv~g~~~~ 87 (235)
T PRK04516 43 ESGVVPFVLDVQEFDYP----------E-SLDLAALVSLFSRHGMQILGLKHSNER 87 (235)
T ss_pred CCCCCcEEEEchhhCCc----------c-cccHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 366778 5899998421 1 112566999999999999876665554
No 77
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=26.29 E-value=1.2e+02 Score=25.91 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=33.4
Q ss_pred CCCCcE-EeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHH
Q 024369 5 FKSIPI-IDVSPLVAKCEDPKMAEDPGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDV 63 (268)
Q Consensus 5 ~~~iPv-IDls~l~~~~~d~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~ 63 (268)
|...|+ ||++.+.... + ..-...|.+.|+++|+.-|--.|-..+..+.+
T Consensus 48 F~~~PvVlDl~~l~~~~---------~-~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a 97 (248)
T PRK04596 48 FGRAAVILDFGGLSQVP---------D-LATAKALLDGLRSAGVLPVALAYGTSEIDLLS 97 (248)
T ss_pred hCCCcEEEEchhhcCcc---------c-cccHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 456676 7999985310 0 11246699999999999998888776654443
No 78
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=26.10 E-value=1.2e+02 Score=20.57 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHH
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNI 66 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~ 66 (268)
.++++.|.++++..||..=.-||.-.+...+++..
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~ 49 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRA 49 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHH
Confidence 57899999999999997777788766655555543
No 79
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=25.58 E-value=2.2e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
..+++++.|.+.+++...|.+.+ +|++...++++.+..+.
T Consensus 7 ~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 7 WKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 45688999999999887777765 79999888888877665
No 80
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=25.09 E-value=2.3e+02 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
...+.+++|.+.+++.-.+++.+ .|++...+.++.+..+.
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45678899999999887777765 58888777777776654
No 81
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.81 E-value=1.2e+02 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccc
Q 024369 150 NLCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 150 ~~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
+.-++|...|.+++++.||+|++..
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3556788889999999999997643
No 82
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=23.77 E-value=77 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcceEEEE--cCCCCH
Q 024369 32 SQVVKQLDKACKEAGFFYVK--GHGIPE 57 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~--nhGi~~ 57 (268)
...+.+|.+||+++|+.+++ +||-.+
T Consensus 435 D~aig~Iy~A~~~~~y~lvvTADHGNAE 462 (531)
T KOG4513|consen 435 DEAIGKIYDAIEQVGYILVVTADHGNAE 462 (531)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCCCCHH
Confidence 45678999999999999997 677643
No 83
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=23.76 E-value=91 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHH-hcceEEEEcCCC
Q 024369 32 SQVVKQLDKACK-EAGFFYVKGHGI 55 (268)
Q Consensus 32 ~~~~~~l~~A~~-~~GFf~l~nhGi 55 (268)
+++++.+.++++ +...+.+.|||+
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCce
Confidence 589999999998 888899999996
No 84
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=23.70 E-value=1.3e+02 Score=18.48 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccc
Q 024369 150 NLCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 150 ~~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
+.-++|+..|.+++++.+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4556888899999999999987643
No 85
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.65 E-value=82 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhcceE
Q 024369 31 VSQVVKQLDKACKEAGFF 48 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~GFf 48 (268)
.++..++|.+++++.||-
T Consensus 27 s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 27 SEETRERILEAAEELGYR 44 (46)
T ss_dssp THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 368899999999999983
No 86
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=23.62 E-value=1.2e+02 Score=19.05 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccc
Q 024369 151 LCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 151 ~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
.-++|...|.+.+++.+|+|++..
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 16 QLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhE
Confidence 456788889999999999987643
No 87
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=23.47 E-value=1.5e+02 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHh
Q 024369 33 QVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKF 70 (268)
Q Consensus 33 ~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~f 70 (268)
+..++|++++.+.|++.|.+-.++.+.+ .+.++.|
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~---~~~~~~~ 58 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQF---EALASRL 58 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHH---HHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHH---HHHHHhh
Confidence 4789999999999999999887755443 4445555
No 88
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.47 E-value=1.3e+02 Score=18.95 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccc
Q 024369 151 LCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 151 ~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
.-.+|++.|.++++..||.+++..
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccE
Confidence 456788889999999999987643
No 89
>PLN02433 uroporphyrinogen decarboxylase
Probab=23.46 E-value=1.2e+02 Score=26.92 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHhcceEEEEcCCCC----HHHHHHHHHHHHHh
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKGHGIP----ESLINDVKNITQKF 70 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~nhGi~----~~~~~~~~~~~~~f 70 (268)
+..+.++++.+++..-||+.-.+|||+ .+-++.+.++++++
T Consensus 293 ~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~ 337 (345)
T PLN02433 293 AIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVAREL 337 (345)
T ss_pred HHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHh
Confidence 455666677776666687777789986 47788888888774
No 90
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=23.44 E-value=2.2e+02 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 32 SQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
++....+.+-|.+.|.--|++ .|.+.+.++.+-++++.
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 356777888888899888887 49999888888887766
No 91
>PHA00371 mat maturation protein
Probab=23.34 E-value=45 Score=30.33 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=28.1
Q ss_pred cceeeecCCCCeEEcCC--CcEEEEecchhhHhhhccc
Q 024369 215 EVDVFFLAYDNWEHMLC--IISFFLYLFIYLFLWSKLC 250 (268)
Q Consensus 215 glqv~~~~~~~W~~V~p--pg~~vVnvGD~l~~~Sn~~ 250 (268)
.+.+..|..=.|.-+|. -=..++|||||||.+++..
T Consensus 296 ~lgllNP~evaWEltPySFVvDWflnVG~mle~~~~l~ 333 (418)
T PHA00371 296 RLGLLNPLEVAWELTPYSFVVDWFLNVGNMLEALTALY 333 (418)
T ss_pred hhcccChhhceeeeeceeeeeeeeccHhHHHHHhcccc
Confidence 45566667778988876 5667799999999999843
No 92
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=22.44 E-value=48 Score=19.42 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.7
Q ss_pred cceeeecCCCCeEEcCC-C
Q 024369 215 EVDVFFLAYDNWEHMLC-I 232 (268)
Q Consensus 215 glqv~~~~~~~W~~V~p-p 232 (268)
..++..+.+++|..+++ |
T Consensus 29 ~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 29 SVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTTTEEEEEEEES
T ss_pred eEEEEeCCCCEEEEcCCCC
Confidence 34566678999999987 6
No 93
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=22.43 E-value=42 Score=18.18 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=11.7
Q ss_pred EEEEcCCCCHHHHHHHH
Q 024369 48 FYVKGHGIPESLINDVK 64 (268)
Q Consensus 48 f~l~nhGi~~~~~~~~~ 64 (268)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 36778899887665543
No 94
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=22.38 E-value=2.8e+02 Score=19.35 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHhcceEEEE-cCCCCHHHHHHHHHHHHHh
Q 024369 29 PGVSQVVKQLDKACKEAGFFYVK-GHGIPESLINDVKNITQKF 70 (268)
Q Consensus 29 ~~~~~~~~~l~~A~~~~GFf~l~-nhGi~~~~~~~~~~~~~~f 70 (268)
+...+.+++|.+.+.+.=.+++. .+|++...+.++....+..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 34578899999999988555554 5799998888877766553
No 95
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=22.27 E-value=1.1e+02 Score=24.93 Aligned_cols=25 Identities=12% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcc---eEEEEcCCC
Q 024369 31 VSQVVKQLDKACKEAG---FFYVKGHGI 55 (268)
Q Consensus 31 ~~~~~~~l~~A~~~~G---Ff~l~nhGi 55 (268)
.+++++.+.+++++.. .+.|.|||+
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 3688999999998864 899999997
No 96
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=22.03 E-value=1.4e+02 Score=19.33 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcc--eEEEEc------CCCCHHHHHHHHHHHHH
Q 024369 32 SQVVKQLDKACKEAG--FFYVKG------HGIPESLINDVKNITQK 69 (268)
Q Consensus 32 ~~~~~~l~~A~~~~G--Ff~l~n------hGi~~~~~~~~~~~~~~ 69 (268)
.+..+.|.+.++++| .+.++. +||+.+.+..+++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 456788888888776 777763 57888888888776553
No 97
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=21.78 E-value=34 Score=21.41 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=8.4
Q ss_pred ccccccccccccccc
Q 024369 249 LCLCNFSGAHTDYGK 263 (268)
Q Consensus 249 ~~l~~~~~~~~~~~~ 263 (268)
||+ |+-|-||||--
T Consensus 20 GRv-nliGeHtDy~g 33 (52)
T PF10509_consen 20 GRV-NLIGEHTDYNG 33 (52)
T ss_dssp EEE-EEE-TT-GGGT
T ss_pred ceE-EecCcccccCC
Confidence 444 77889999953
No 98
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.56 E-value=1.3e+02 Score=21.99 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCccc
Q 024369 151 LCTDLSRKIMRGIALALGGSPFE 173 (268)
Q Consensus 151 ~~~~l~~~Ll~~la~~Lgl~~~~ 173 (268)
.-.+++..|.+.+++.||++++.
T Consensus 73 ~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 73 NNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred HHHHHHHHHHHHHHHHhCcCccc
Confidence 45677888899999999999874
No 99
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=21.54 E-value=1.4e+02 Score=21.92 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccccc
Q 024369 150 NLCTDLSRKIMRGIALALGGSPFEFEG 176 (268)
Q Consensus 150 ~~~~~l~~~Ll~~la~~Lgl~~~~f~~ 176 (268)
+.+..++..|+.-|++..+.|.+.|.-
T Consensus 12 e~v~~~S~~LideLa~i~~~p~e~ftl 38 (108)
T PF08921_consen 12 EQVQELSKELIDELAEICGCPRENFTL 38 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGG-EE
T ss_pred HHHHHHhHHHHHHHHHHHCCCcceEEE
Confidence 467889999999999999999987753
No 100
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.27 E-value=24 Score=32.27 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=33.1
Q ss_pred CeEEcCC-CcEEEEecchhhHhhhccccccccc---cccccccccc
Q 024369 225 NWEHMLC-IISFFLYLFIYLFLWSKLCLCNFSG---AHTDYGKEFL 266 (268)
Q Consensus 225 ~W~~V~p-pg~~vVnvGD~l~~~Sn~~l~~~~~---~~~~~~~~~~ 266 (268)
.|+.|+| |+.+|=-.=|+-|+|+|--|.-|-+ .|.++-|.||
T Consensus 148 gWVav~~tP~p~vke~~daa~FY~NrvLkEyk~~D~~hveWvKa~l 193 (480)
T KOG2675|consen 148 GWVAVKPTPAPYVKEFKDAAQFYTNRVLKEYKEKDPRHVEWVKAYL 193 (480)
T ss_pred eeEecCCCCchHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 5999999 9999999999999999988855543 3555555444
No 101
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.05 E-value=1.5e+02 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHhcceEEEEcCCCC----HHHHHHHHHHHHHh
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKGHGIP----ESLINDVKNITQKF 70 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~nhGi~----~~~~~~~~~~~~~f 70 (268)
+..+.++++.+.+..-||+.-.+|||+ .+-++.+.++++++
T Consensus 300 ~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 300 AIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred HHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 445666677766666787777889876 47788888887763
No 102
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=20.68 E-value=1.4e+02 Score=18.71 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccc
Q 024369 151 LCTDLSRKIMRGIALALGGSPFEF 174 (268)
Q Consensus 151 ~~~~l~~~Ll~~la~~Lgl~~~~f 174 (268)
.-.+|+..|.+++++.+|.+++.+
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 16 QKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHE
Confidence 556788899999999999987644
No 103
>PF06708 DUF1195: Protein of unknown function (DUF1195); InterPro: IPR010608 This family consists of several plant specific hypothetical proteins of around 160 residues in length. The function of this family is unknown.
Probab=20.55 E-value=1.7e+02 Score=22.49 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHHHHhcC
Q 024369 29 PGVSQVVKQLDKACKEAGFFYVKGHGIPESLINDVKNITQKFFD 72 (268)
Q Consensus 29 ~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~ 72 (268)
++|+++++++.+-+...+ .-++| ...+++|+++.+...
T Consensus 88 EeREKvVr~MWDvYt~s~-----~vrLP-rFWqEAFeAAYe~L~ 125 (157)
T PF06708_consen 88 EEREKVVRHMWDVYTRSR-----RVRLP-RFWQEAFEAAYEELA 125 (157)
T ss_pred HHHHHHHHHHHHHhcCCC-----CccCc-hHHHHHHHHHHHHHh
Confidence 578899999999988765 22344 578888888877653
No 104
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=20.24 E-value=2.5e+02 Score=24.98 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHhcceEEEEc-CCCCHHHHHHHHHHHHH
Q 024369 30 GVSQVVKQLDKACKEAGFFYVKG-HGIPESLINDVKNITQK 69 (268)
Q Consensus 30 ~~~~~~~~l~~A~~~~GFf~l~n-hGi~~~~~~~~~~~~~~ 69 (268)
.+.+.+++|.+.++++..++|++ +|++...++++.+..+.
T Consensus 7 ~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 7 WKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 35678899999999998888876 68998888888777664
No 105
>PRK07044 aldolase II superfamily protein; Provisional
Probab=20.08 E-value=1.8e+02 Score=24.68 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcceEEEEcCCCC
Q 024369 32 SQVVKQLDKACKEAGFFYVKGHGIP 56 (268)
Q Consensus 32 ~~~~~~l~~A~~~~GFf~l~nhGi~ 56 (268)
.++++.+.+++.+...+.|.|||+-
T Consensus 151 ~e~~~~va~~l~~~~avLL~nHGvi 175 (252)
T PRK07044 151 LDEGERLVADLGDKPAMLLRNHGLL 175 (252)
T ss_pred HHHHHHHHHHhccCCEEEECCCCce
Confidence 3567888888888899999999973
Done!