Query 024370
Match_columns 268
No_of_seqs 204 out of 1513
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0631 PTC1 Serine/threonine 100.0 7.9E-39 1.7E-43 278.3 19.8 210 55-264 6-246 (262)
2 KOG1379 Serine/threonine prote 100.0 1.3E-34 2.8E-39 248.2 22.6 255 2-256 18-294 (330)
3 PLN03145 Protein phosphatase 2 100.0 1E-34 2.2E-39 262.1 20.2 204 57-264 65-324 (365)
4 PRK14559 putative protein seri 100.0 8.8E-34 1.9E-38 270.3 20.3 210 55-264 373-629 (645)
5 PTZ00224 protein phosphatase 2 100.0 5.9E-32 1.3E-36 245.0 21.3 202 57-264 22-265 (381)
6 cd00143 PP2Cc Serine/threonine 100.0 4E-31 8.6E-36 227.8 18.9 202 62-263 5-248 (254)
7 smart00332 PP2Cc Serine/threon 100.0 2.8E-30 6E-35 223.2 19.5 201 63-263 11-251 (255)
8 PF00481 PP2C: Protein phospha 100.0 1.4E-30 3.1E-35 226.0 10.6 194 68-262 10-254 (254)
9 KOG0697 Protein phosphatase 1B 100.0 3.5E-27 7.6E-32 198.5 16.2 204 54-260 21-281 (379)
10 KOG0698 Serine/threonine prote 99.9 4.9E-27 1.1E-31 210.7 16.7 198 63-264 46-298 (330)
11 KOG0700 Protein phosphatase 2C 99.9 1.9E-23 4E-28 185.2 13.4 187 70-256 83-377 (390)
12 PF13672 PP2C_2: Protein phosp 99.9 2.7E-23 5.8E-28 175.3 11.1 174 62-238 3-193 (212)
13 smart00331 PP2C_SIG Sigma fact 99.9 5.6E-20 1.2E-24 152.8 20.1 177 59-254 6-192 (193)
14 KOG0699 Serine/threonine prote 99.8 1.8E-20 3.9E-25 163.3 14.5 116 142-258 330-485 (542)
15 KOG1323 Serine/threonine phosp 99.8 6.3E-18 1.4E-22 146.1 14.3 175 83-257 144-461 (493)
16 TIGR02865 spore_II_E stage II 99.7 1.1E-16 2.4E-21 157.5 16.3 189 49-257 546-748 (764)
17 PF07228 SpoIIE: Stage II spor 99.5 7.5E-12 1.6E-16 103.6 17.4 154 83-255 4-175 (193)
18 COG2208 RsbU Serine phosphatas 98.5 8E-06 1.7E-10 74.7 18.2 169 70-255 160-347 (367)
19 KOG0618 Serine/threonine phosp 98.4 6.9E-07 1.5E-11 87.6 8.5 170 82-255 550-757 (1081)
20 PRK10693 response regulator of 74.9 40 0.00087 29.8 10.4 101 70-174 148-259 (303)
21 PF09436 DUF2016: Domain of un 73.9 1.9 4.1E-05 29.8 1.3 23 211-233 25-47 (72)
22 COG2168 DsrH Uncharacterized c 48.0 15 0.00033 26.7 2.1 31 209-239 21-51 (96)
23 PF06251 Caps_synth_GfcC: Caps 38.9 66 0.0014 27.2 5.0 33 206-238 189-225 (229)
24 TIGR03735 PRTRC_A PRTRC system 33.5 23 0.0005 29.4 1.3 46 211-256 24-90 (192)
25 PF06972 DUF1296: Protein of u 32.0 65 0.0014 21.3 2.9 25 227-251 19-44 (60)
26 COG3700 AphA Acid phosphatase 31.6 94 0.002 25.7 4.4 46 211-256 69-129 (237)
27 PF01436 NHL: NHL repeat; Int 30.0 97 0.0021 16.6 3.6 20 150-169 9-28 (28)
28 TIGR01589 A_thal_3526 uncharac 28.1 63 0.0014 21.2 2.4 42 226-267 15-56 (57)
29 PRK03982 heat shock protein Ht 22.7 90 0.0019 27.4 3.2 28 211-238 104-131 (288)
30 COG5400 Uncharacterized protei 20.6 3.8E+02 0.0081 21.8 5.9 30 139-168 89-118 (205)
No 1
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-39 Score=278.26 Aligned_cols=210 Identities=23% Similarity=0.254 Sum_probs=172.4
Q ss_pred eeeeeEEecCCCCCCCCCCceEEEeecCC----eEEEEecCCCchhhccccHHHHHHHHHHHHhhhhh-----------h
Q 024370 55 FCVGTHLIPHPNKVERGGEDAFFVSCYNG----GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE-----------D 119 (268)
Q Consensus 55 ~~~~~~~~s~~G~~r~~neDa~~v~~~~~----~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~-----------~ 119 (268)
+...++..++.|..|..|||++++..... .+|+|||||||++++++||+.+++.|.+.+.+... .
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~ 85 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLK 85 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 44557778999999999999999987443 39999999999999999999999999988654221 1
Q ss_pred ccCcccHHHHHHHHHhccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccc--------------cC
Q 024370 120 VEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH--------------YF 185 (268)
Q Consensus 120 ~~~~~~~~~l~~~a~~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~--------------~~ 185 (268)
+.+...+..+.+.........++|||++++++.++++++|||||||+|++|+|++.++|.||.. ..
T Consensus 86 ~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~ 165 (262)
T COG0631 86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR 165 (262)
T ss_pred HHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH
Confidence 1233334444444443456689999999999999999999999999999999999999999952 12
Q ss_pred CCCcc-ccccccCCc-cccceEEEEEcCCCCEEEEecCCCCCCCChHHHHHHhhcCCCHHHHHHHHHHHHHhcchhhhhh
Q 024370 186 DCPYQ-LSSEAVGQT-YLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGICSVFGSIYQKIIYSVA 263 (268)
Q Consensus 186 ~~p~~-l~~~~~g~~-~~~~~~~~~~l~~gD~liL~SDGl~d~l~~~ei~~~v~~~~~~~~~a~~Lv~~A~~~~~~~~~~ 263 (268)
.+|.+ ..++++|+. ..+|++...+++++|++|||||||||.++++++.+++....+++++++.|++.|+....+.|++
T Consensus 166 ~~~~~~~ltralG~~~~~~p~~~~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g~~DNiT 245 (262)
T COG0631 166 SHPRRNALTRALGDFDLLEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGGGPDNIT 245 (262)
T ss_pred hCccchhhhhhcCCCcccceeEEEEEcCCCCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCceE
Confidence 35554 244556664 4899999999999999999999999999999999999987799999999999999988777765
Q ss_pred h
Q 024370 264 Q 264 (268)
Q Consensus 264 ~ 264 (268)
.
T Consensus 246 ~ 246 (262)
T COG0631 246 V 246 (262)
T ss_pred E
Confidence 4
No 2
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=248.19 Aligned_cols=255 Identities=34% Similarity=0.498 Sum_probs=190.4
Q ss_pred cchhhHhhhhcccccccccccccCCCCCCCcCCCCCccC--CCCCCCCCC-CCcceeeeeeEEecCCCCCCCCCCceEEE
Q 024370 2 VVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFA--SSELNPVQS-RPELSFCVGTHLIPHPNKVERGGEDAFFV 78 (268)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~s~~G~~r~~neDa~~v 78 (268)
+.++.+++..++-+.++..+.+.+.-+..+......... +.+...... -.......+.+..+++-+.-+.+||+||+
T Consensus 18 ~~~~~~~~~~~s~~~~~l~s~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~~GEDa~Fv 97 (330)
T KOG1379|consen 18 AGQVLNRLVRHSSNVLRLSSQNAGFVSFSKYAKSTYGSDNSPGEAASLSSLVTSLCGFSKDFIRPHPSKVGKGGEDAWFV 97 (330)
T ss_pred hhhhHhhhhhccccchhhhccccCccccccccccccccCCCCcccccchhhhhhhccccccccCCccccCCCCCCcceee
Confidence 456677777777777775555443222221111111111 111111110 01111222334445555666789999999
Q ss_pred eecCC-eEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccC-cccHHHHHHHHHhccCCC-----CccceEEEEEe
Q 024370 79 SCYNG-GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV-NYDPQILMRKAHAATSSV-----GSATVIVAMLE 151 (268)
Q Consensus 79 ~~~~~-~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~-----~~gtt~~~~l~ 151 (268)
..+.. .++|||||+|||+.-++.+..+.+.|++.+++.++.... ...+..++.+++.+.... |+.|.|++++-
T Consensus 98 ss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~~~~~vGSSTAcI~~l~ 177 (330)
T KOG1379|consen 98 SSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQKVPIVGSSTACILALD 177 (330)
T ss_pred ccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhcCCCCCCcceeeeeeee
Confidence 98544 499999999999999999999999999999998876443 458899999998776555 88888888877
Q ss_pred e-CCeEEEEEecCCeeEEEECCeeEEeCccccccCCCCccccccc------cCCccccceEEEEEcCCCCEEEEecCCCC
Q 024370 152 R-NGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEA------VGQTYLDAMVTTVELIEGDTIVMGSDGLF 224 (268)
Q Consensus 152 ~-~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~~~p~~l~~~~------~g~~~~~~~~~~~~l~~gD~liL~SDGl~ 224 (268)
+ +++|+++|+|||...++|+|++++.|+.|++.||+||||+... ..+.+...+...+++++||+|||+|||||
T Consensus 178 ~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATDGlf 257 (330)
T KOG1379|consen 178 RENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATDGLF 257 (330)
T ss_pred cCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEeccccc
Confidence 5 7899999999999999999999999999999999999998754 34445567899999999999999999999
Q ss_pred CCCChHHHHHHhhc-----CCCHHHHHHHHHHHHHhc
Q 024370 225 DNVFDHEVVSMTTR-----FIDVSEAGICSVFGSIYQ 256 (268)
Q Consensus 225 d~l~~~ei~~~v~~-----~~~~~~~a~~Lv~~A~~~ 256 (268)
|+|.+++|..++.. ..+++..|+.+++.|...
T Consensus 258 DNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~l 294 (330)
T KOG1379|consen 258 DNLPEKEILSILKGLDARGNLDLQVTAQKIAEKAREL 294 (330)
T ss_pred ccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence 99999999999965 237999999999998764
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1e-34 Score=262.13 Aligned_cols=204 Identities=19% Similarity=0.205 Sum_probs=152.1
Q ss_pred eeeEEecCCCCCCCCCCceEEEeec-------------CCeEEEEecCCCchhhccccHHHHHHHHHHHHh------hhh
Q 024370 57 VGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANAS------YFV 117 (268)
Q Consensus 57 ~~~~~~s~~G~~r~~neDa~~v~~~-------------~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~------~~~ 117 (268)
+.+++.+++|. |+.|||++++..+ ...||+|||||||+.++++|++.+.+.+.+... +++
T Consensus 65 ~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al 143 (365)
T PLN03145 65 VRSGAWADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVV 143 (365)
T ss_pred eEEEEEccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 55678899996 9999999987542 135999999999999999999998887765311 111
Q ss_pred hhccCcccHHHHHHHHHhccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccccCC-----------
Q 024370 118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD----------- 186 (268)
Q Consensus 118 ~~~~~~~~~~~l~~~a~~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~~----------- 186 (268)
. ..+...+..+.+.. .......+|||++++++.++++|++|+||||+|++++|++++||.||+....
T Consensus 144 ~-~af~~~d~~~~~~~-~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 144 S-SAFLQTDTAFAEAC-SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred H-HHHHHHhHHHHhhh-ccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 1 12222222222211 1112345899999999999999999999999999999999999999964221
Q ss_pred -------CCc-cccccccCC-------------ccccceEEEEEcCCCCE-EEEecCCCCCCCChHHHHHHhh----cCC
Q 024370 187 -------CPY-QLSSEAVGQ-------------TYLDAMVTTVELIEGDT-IVMGSDGLFDNVFDHEVVSMTT----RFI 240 (268)
Q Consensus 187 -------~p~-~l~~~~~g~-------------~~~~~~~~~~~l~~gD~-liL~SDGl~d~l~~~ei~~~v~----~~~ 240 (268)
++. .++ +++|+ ...+|++..+++.++|. ||||||||||+|+++++++++. +..
T Consensus 222 ~v~~g~v~g~l~vT-RalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~ 300 (365)
T PLN03145 222 YVYDGYLNGQLNVA-RALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHN 300 (365)
T ss_pred ceecceECCccccc-cccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCC
Confidence 111 133 44554 24589999999998886 5689999999999999876664 345
Q ss_pred CHHHHHHHHHHHHHhcchhhhhhh
Q 024370 241 DVSEAGICSVFGSIYQKIIYSVAQ 264 (268)
Q Consensus 241 ~~~~~a~~Lv~~A~~~~~~~~~~~ 264 (268)
+|+++|+.|+++|+.+...+|++-
T Consensus 301 ~p~~aa~~Lv~~Al~rgs~DNITv 324 (365)
T PLN03145 301 DPVMCSKELVDEALKRKSGDNLAV 324 (365)
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEE
Confidence 899999999999999988877654
No 4
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=8.8e-34 Score=270.30 Aligned_cols=210 Identities=18% Similarity=0.176 Sum_probs=159.9
Q ss_pred eeeeeEEecCCCCCCCCCCceEEEeec-------------CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhh--
Q 024370 55 FCVGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-- 119 (268)
Q Consensus 55 ~~~~~~~~s~~G~~r~~neDa~~v~~~-------------~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-- 119 (268)
+.+.+++.++.|.+|+.|||++.+... ..++|+|||||||+.+|++||+.+++.|.+++.+....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 456778899999999999999876531 23599999999999999999999999988776543221
Q ss_pred -------ccCcccHHHHHHHHHhcc--CCCCccceEEEEEeeCCeEEEEEecCCeeEEE-ECCeeEEeCcccccc-----
Q 024370 120 -------VEVNYDPQILMRKAHAAT--SSVGSATVIVAMLERNGILKVASVGDCGLRII-RKGQITFSSSPQEHY----- 184 (268)
Q Consensus 120 -------~~~~~~~~~l~~~a~~~~--~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~-r~g~~~~lt~dh~~~----- 184 (268)
..+..++..+.+...... ...++|||++++++.++++|++||||||+|++ |+|++.+||.||...
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~ 532 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQ 532 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHH
Confidence 122233444443332222 44579999999999999999999999999998 478999999999531
Q ss_pred --------CCCCc--cccccccCCc--cccceEEEEEcCCCCEEEEecCCCCCC--CCh---HHHHHHhhcCCCHHHHHH
Q 024370 185 --------FDCPY--QLSSEAVGQT--YLDAMVTTVELIEGDTIVMGSDGLFDN--VFD---HEVVSMTTRFIDVSEAGI 247 (268)
Q Consensus 185 --------~~~p~--~l~~~~~g~~--~~~~~~~~~~l~~gD~liL~SDGl~d~--l~~---~ei~~~v~~~~~~~~~a~ 247 (268)
..+|. .|+++.|... ..+|++..+++++||+||||||||||+ +.+ +++..++....+++++++
T Consensus 533 ~Gi~~~~a~~~p~~~~LTrALG~~~~~~l~Pdi~~~~L~~gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~ 612 (645)
T PRK14559 533 RGVEPQIAYARPDAYQLTQALGPRDNSAIQPDIQFLEIEEDTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLN 612 (645)
T ss_pred hCCCHHHHhcCcccceeeeccCCCCCCcccceEEEEEcCCCCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 12343 3555444332 357999999999999999999999994 444 345667776678999999
Q ss_pred HHHHHHHhcchhhhhhh
Q 024370 248 CSVFGSIYQKIIYSVAQ 264 (268)
Q Consensus 248 ~Lv~~A~~~~~~~~~~~ 264 (268)
.|++.|+.+...+|++.
T Consensus 613 ~Li~~Al~~gg~DNITv 629 (645)
T PRK14559 613 KLIDLANQYNGHDNITA 629 (645)
T ss_pred HHHHHHHHcCCCCcEEE
Confidence 99999999988877654
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=5.9e-32 Score=245.02 Aligned_cols=202 Identities=17% Similarity=0.141 Sum_probs=140.4
Q ss_pred eeeEEecCCCCCCCCCCceEEEeec-CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccCcccHHHHHHHHHh
Q 024370 57 VGTHLIPHPNKVERGGEDAFFVSCY-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA 135 (268)
Q Consensus 57 ~~~~~~s~~G~~r~~neDa~~v~~~-~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~a~~ 135 (268)
+.+...+++|. |+.|||++++... +.++|+|||||||..++.++++.+.+.+ ..... .........++..+..
T Consensus 22 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l----~~~~~-~~~~~~l~~a~~~~d~ 95 (381)
T PTZ00224 22 FRCASACVNGY-RESMEDAHLLYLTDDWGFFGVFDGHVNDECSQYLARAWPQAL----EKEPE-PMTDERMEELCLEIDE 95 (381)
T ss_pred EEEEEEeCCCC-CCCCCCeeEeccCCCceEEEEEeCCCcHHHHHHHHHHHHHHH----Hhccc-cccHHHHHHHHHHHHH
Confidence 34556788998 9999999886543 3469999999998776555544444333 21100 0000001112222111
Q ss_pred c--cCCCCccceEEEEEe-eCCeEEEEEecCCeeEEEECCeeEEeCccccccCC-------------CCcc-----cccc
Q 024370 136 A--TSSVGSATVIVAMLE-RNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD-------------CPYQ-----LSSE 194 (268)
Q Consensus 136 ~--~~~~~~gtt~~~~l~-~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~~-------------~p~~-----l~~~ 194 (268)
. .....+|||++++++ .+.+++++||||||+|++|+|++++||.||+..-. ++.+ ..++
T Consensus 96 ~i~~~~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTR 175 (381)
T PTZ00224 96 EWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSR 175 (381)
T ss_pred HHHhcccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeec
Confidence 1 011234777776666 46799999999999999999999999999964221 1222 2334
Q ss_pred ccCCcc---------------ccceEEEEEcCCCCEEEEecCCCCC-CCChHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 024370 195 AVGQTY---------------LDAMVTTVELIEGDTIVMGSDGLFD-NVFDHEVVSMTTR----FIDVSEAGICSVFGSI 254 (268)
Q Consensus 195 ~~g~~~---------------~~~~~~~~~l~~gD~liL~SDGl~d-~l~~~ei~~~v~~----~~~~~~~a~~Lv~~A~ 254 (268)
++|+.. .+|++..++++++|+|||||||||| +++++|+.+++.+ ..+++++|+.|+++|+
T Consensus 176 alGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~ 255 (381)
T PTZ00224 176 AFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSNDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAI 255 (381)
T ss_pred ccCCcccccccccccccCcceeeeEEEEEECCCCCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 556521 5789999999999999999999999 7999999999863 3589999999999999
Q ss_pred hcchhhhhhh
Q 024370 255 YQKIIYSVAQ 264 (268)
Q Consensus 255 ~~~~~~~~~~ 264 (268)
.+...+|++-
T Consensus 256 ~rGs~DNITv 265 (381)
T PTZ00224 256 RRGSKDNISC 265 (381)
T ss_pred hcCCCCCEEE
Confidence 9988877653
No 6
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.98 E-value=4e-31 Score=227.84 Aligned_cols=202 Identities=23% Similarity=0.283 Sum_probs=154.0
Q ss_pred ecCCCCCCCCCCceEEEeecC----CeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhh--hc--------cCcccHH
Q 024370 62 IPHPNKVERGGEDAFFVSCYN----GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE--DV--------EVNYDPQ 127 (268)
Q Consensus 62 ~s~~G~~r~~neDa~~v~~~~----~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~--~~--------~~~~~~~ 127 (268)
.+..|..|..|||++++.... ..+|+|||||||+..+++|++.+++.+.+.+..... .. .+...+.
T Consensus 5 ~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (254)
T cd00143 5 VSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADE 84 (254)
T ss_pred eecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 344555688999999998754 369999999999999999999999998887654321 00 1111111
Q ss_pred HHHHHHHhccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccccC-----------------CCCcc
Q 024370 128 ILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF-----------------DCPYQ 190 (268)
Q Consensus 128 ~l~~~a~~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~-----------------~~p~~ 190 (268)
.+............+|||++++++.+++++++|+||||+|++++++++++|.||.... ..|.+
T Consensus 85 ~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~ 164 (254)
T cd00143 85 EILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGV 164 (254)
T ss_pred HHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCc
Confidence 2222211112346789999999999999999999999999999999999999996542 22322
Q ss_pred -ccccccCCc------cccceEEEEEc-CCCCEEEEecCCCCCCCChHHHHHHhhcCC---CHHHHHHHHHHHHHhcchh
Q 024370 191 -LSSEAVGQT------YLDAMVTTVEL-IEGDTIVMGSDGLFDNVFDHEVVSMTTRFI---DVSEAGICSVFGSIYQKII 259 (268)
Q Consensus 191 -l~~~~~g~~------~~~~~~~~~~l-~~gD~liL~SDGl~d~l~~~ei~~~v~~~~---~~~~~a~~Lv~~A~~~~~~ 259 (268)
..++.+|.. ..+|++...++ +++|+|+||||||||++++++|.+++.... +++++|+.|++.|..+...
T Consensus 165 ~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~ 244 (254)
T cd00143 165 LAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSH 244 (254)
T ss_pred eeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhCCCC
Confidence 223445543 56889999999 999999999999999999999999998876 7999999999999998755
Q ss_pred hhhh
Q 024370 260 YSVA 263 (268)
Q Consensus 260 ~~~~ 263 (268)
.+++
T Consensus 245 Dn~t 248 (254)
T cd00143 245 DNIT 248 (254)
T ss_pred CCEE
Confidence 5543
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=2.8e-30 Score=223.17 Aligned_cols=201 Identities=21% Similarity=0.225 Sum_probs=147.7
Q ss_pred cCCCCCCCCCCceEEEeec---CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhh-ccCcccHHHHHHHHH----
Q 024370 63 PHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-VEVNYDPQILMRKAH---- 134 (268)
Q Consensus 63 s~~G~~r~~neDa~~v~~~---~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~a~---- 134 (268)
++.|..|..|||++++... +..+|+|||||||..++.++++.+.+.+.+........ .........++.+++
T Consensus 11 ~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (255)
T smart00332 11 SSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEIL 90 (255)
T ss_pred ecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 4456679999999998874 34499999999988888888777777666543322100 001111111222221
Q ss_pred ----hccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccc-------------------cCCCCccc
Q 024370 135 ----AATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH-------------------YFDCPYQL 191 (268)
Q Consensus 135 ----~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~-------------------~~~~p~~l 191 (268)
.......+|||++++++.+++++++|+||||+|++|++++.++|.||.. ..+....+
T Consensus 91 ~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 170 (255)
T smart00332 91 EELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLAL 170 (255)
T ss_pred HhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEec
Confidence 1122356899999999999999999999999999999999999999976 22222345
Q ss_pred cccccCCc-----cccceEEEEEc-CCCCEEEEecCCCCCCCChHHHHHHhhcCC---CHHHHHHHHHHHHHhcchhhhh
Q 024370 192 SSEAVGQT-----YLDAMVTTVEL-IEGDTIVMGSDGLFDNVFDHEVVSMTTRFI---DVSEAGICSVFGSIYQKIIYSV 262 (268)
Q Consensus 192 ~~~~~g~~-----~~~~~~~~~~l-~~gD~liL~SDGl~d~l~~~ei~~~v~~~~---~~~~~a~~Lv~~A~~~~~~~~~ 262 (268)
++..+... ..+|++...++ +++|+||||||||||+++++++.+++.+.. +++++++.|++.|..+...+++
T Consensus 171 t~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~Dn~ 250 (255)
T smart00332 171 SRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALARGSKDNI 250 (255)
T ss_pred ccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcCCCCCe
Confidence 54444332 35788888885 999999999999999999999999998754 5999999999999998666655
Q ss_pred h
Q 024370 263 A 263 (268)
Q Consensus 263 ~ 263 (268)
+
T Consensus 251 T 251 (255)
T smart00332 251 T 251 (255)
T ss_pred E
Confidence 4
No 8
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.97 E-value=1.4e-30 Score=225.96 Aligned_cols=194 Identities=22% Similarity=0.212 Sum_probs=136.2
Q ss_pred CCCCCCceEEEeec--------CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhh---c----cCcc-cHHHHHH
Q 024370 68 VERGGEDAFFVSCY--------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED---V----EVNY-DPQILMR 131 (268)
Q Consensus 68 ~r~~neDa~~v~~~--------~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~---~----~~~~-~~~~l~~ 131 (268)
.|+.|||++++... +..+|+|||||||..++.+++..+.+.+.+........ . .+.. ....+.+
T Consensus 10 ~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~ 89 (254)
T PF00481_consen 10 VRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYS 89 (254)
T ss_dssp TSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccc
Confidence 49999999998762 22399999999999999999888887666554322210 0 1111 1111111
Q ss_pred HHHhccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeE-EeCccccccCC---------CC-----cc-----c
Q 024370 132 KAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQIT-FSSSPQEHYFD---------CP-----YQ-----L 191 (268)
Q Consensus 132 ~a~~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~-~lt~dh~~~~~---------~p-----~~-----l 191 (268)
..... ....+|||++++++.++++|+||+||||+|+++.+... +||.||++... ++ .+ -
T Consensus 90 ~~~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~ 168 (254)
T PF00481_consen 90 DSENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLA 168 (254)
T ss_dssp HHHHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBS
T ss_pred ccccc-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccc
Confidence 11111 45678999999999999999999999999999988888 99999964221 11 11 1
Q ss_pred cccccCCc----------cccceEEEEEcCCCC-EEEEecCCCCCCCChHHHHHHhhcCCC----HHHHHHHHHHHHHhc
Q 024370 192 SSEAVGQT----------YLDAMVTTVELIEGD-TIVMGSDGLFDNVFDHEVVSMTTRFID----VSEAGICSVFGSIYQ 256 (268)
Q Consensus 192 ~~~~~g~~----------~~~~~~~~~~l~~gD-~liL~SDGl~d~l~~~ei~~~v~~~~~----~~~~a~~Lv~~A~~~ 256 (268)
.+|++|+. ..+|++..+++.++| +||||||||||+++++|+++++.+... |+.+|+.|+++|+.+
T Consensus 169 ~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~ 248 (254)
T PF00481_consen 169 VSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIAR 248 (254)
T ss_dssp SSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 23555653 246899999999986 799999999999999999999987543 999999999999999
Q ss_pred chhhhh
Q 024370 257 KIIYSV 262 (268)
Q Consensus 257 ~~~~~~ 262 (268)
...+|+
T Consensus 249 gs~DNi 254 (254)
T PF00481_consen 249 GSKDNI 254 (254)
T ss_dssp THHSHE
T ss_pred CCCCCC
Confidence 887764
No 9
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.95 E-value=3.5e-27 Score=198.52 Aligned_cols=204 Identities=18% Similarity=0.193 Sum_probs=146.3
Q ss_pred eeeeeeEEecCCCCCCCCCCceEEEee---c---CCeEEEEecCCCchhhccccHHHHHHHHHHHHh--hhhhhc-----
Q 024370 54 SFCVGTHLIPHPNKVERGGEDAFFVSC---Y---NGGVIAVADGVSGWAEQNVDPSLFSRELMANAS--YFVEDV----- 120 (268)
Q Consensus 54 ~~~~~~~~~s~~G~~r~~neDa~~v~~---~---~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~--~~~~~~----- 120 (268)
.+.+|. .|.+|+ |-.|||++.... + +..||+|||||.|...+..++..+.+++...-+ ..-...
T Consensus 21 glryg~--SSMQGW-R~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~ 97 (379)
T KOG0697|consen 21 GLRYGV--SSMQGW-RVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENV 97 (379)
T ss_pred ceeeee--ccccch-hhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHH
Confidence 455555 456898 999999986542 1 345999999999999999998888887765411 100000
Q ss_pred --cCc---ccHHHHHHHHHhc-cCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccccCCC-------
Q 024370 121 --EVN---YDPQILMRKAHAA-TSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDC------- 187 (268)
Q Consensus 121 --~~~---~~~~~l~~~a~~~-~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~~~------- 187 (268)
.+. ....+.++..... .....+|+|++++++...++|++|+||||++++|+|+++.-|.||++....
T Consensus 98 ~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqn 177 (379)
T KOG0697|consen 98 EKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQN 177 (379)
T ss_pred HhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhc
Confidence 000 1122333333222 223448999999999999999999999999999999999999999875531
Q ss_pred -Cc-----c-----ccccccCCc---------------cccceEEEEEcC-CCCEEEEecCCCCCCCChHHHHHHhhc--
Q 024370 188 -PY-----Q-----LSSEAVGQT---------------YLDAMVTTVELI-EGDTIVMGSDGLFDNVFDHEVVSMTTR-- 238 (268)
Q Consensus 188 -p~-----~-----l~~~~~g~~---------------~~~~~~~~~~l~-~gD~liL~SDGl~d~l~~~ei~~~v~~-- 238 (268)
+. | ...+++|+. +++|++...... .+|||||+|||+||+|+++|+.++++.
T Consensus 178 AGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl 257 (379)
T KOG0697|consen 178 AGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRL 257 (379)
T ss_pred CCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhh
Confidence 11 0 112344431 467888777755 578999999999999999999999976
Q ss_pred --CCCHHHHHHHHHHHHHhcchhh
Q 024370 239 --FIDVSEAGICSVFGSIYQKIIY 260 (268)
Q Consensus 239 --~~~~~~~a~~Lv~~A~~~~~~~ 260 (268)
..+..++|..+++.+|-+-.-.
T Consensus 258 ~Vt~dL~~vcn~VvDtCLhKGSRD 281 (379)
T KOG0697|consen 258 EVTSDLEEVCNDVVDTCLHKGSRD 281 (379)
T ss_pred eecccHHHHHHHHHHHHHhccCcc
Confidence 3489999999999999764433
No 10
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=4.9e-27 Score=210.69 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=140.7
Q ss_pred cCCCCCCCCCCceEEEeec----------CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhh--------ccCc-
Q 024370 63 PHPNKVERGGEDAFFVSCY----------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED--------VEVN- 123 (268)
Q Consensus 63 s~~G~~r~~neDa~~v~~~----------~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~--------~~~~- 123 (268)
+..| .|..|||++..... ..++|||||||||..+++++.+.+...+.+........ ..+.
T Consensus 46 ~~~~-~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~ 124 (330)
T KOG0698|consen 46 SIRG-RRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLT 124 (330)
T ss_pred ecCC-CCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 4444 48899999877654 23599999999999988888877777776654322110 1111
Q ss_pred ccHHHHHHHHHhccCCCCccceEEEEEee-CCeEEEEEecCCeeEEEECC-eeEEeCccccccCC---------------
Q 024370 124 YDPQILMRKAHAATSSVGSATVIVAMLER-NGILKVASVGDCGLRIIRKG-QITFSSSPQEHYFD--------------- 186 (268)
Q Consensus 124 ~~~~~l~~~a~~~~~~~~~gtt~~~~l~~-~~~l~ia~vGDsr~~l~r~g-~~~~lt~dh~~~~~--------------- 186 (268)
..+..++++ ......+|||++++++. +.+||+||+||||++|++.| ..++||.||++...
T Consensus 125 ~~D~~~~~~---~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~ 201 (330)
T KOG0698|consen 125 KTDSEFLEK---REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSN 201 (330)
T ss_pred HHHHHHHhh---ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEE
Confidence 122222222 11123455565555555 55999999999999999855 89999999976332
Q ss_pred C--Ccc-----ccccccCCc-------cccceEEEEEcCC-CCEEEEecCCCCCCCChHHHHHHhhc----CCCHHHHHH
Q 024370 187 C--PYQ-----LSSEAVGQT-------YLDAMVTTVELIE-GDTIVMGSDGLFDNVFDHEVVSMTTR----FIDVSEAGI 247 (268)
Q Consensus 187 ~--p~~-----l~~~~~g~~-------~~~~~~~~~~l~~-gD~liL~SDGl~d~l~~~ei~~~v~~----~~~~~~~a~ 247 (268)
. +.| -..|++|+. ..+|++....+.. .+||||+||||||+|+++|++++++. ..++..+++
T Consensus 202 ~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~ 281 (330)
T KOG0698|consen 202 WGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAK 281 (330)
T ss_pred cCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHH
Confidence 1 112 123555652 3579999888887 67999999999999999999999988 558999999
Q ss_pred HHHHHHHhcchhhhhhh
Q 024370 248 CSVFGSIYQKIIYSVAQ 264 (268)
Q Consensus 248 ~Lv~~A~~~~~~~~~~~ 264 (268)
.|.+.|+.+...++++.
T Consensus 282 ~l~~~a~~~~s~Dnitv 298 (330)
T KOG0698|consen 282 LLATEALSRGSKDNITV 298 (330)
T ss_pred HHHHHHhhcCCCCCeEE
Confidence 99999999877777653
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-23 Score=185.23 Aligned_cols=187 Identities=19% Similarity=0.186 Sum_probs=126.8
Q ss_pred CCCCceEEEee---cCCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhh-------hhc-------------------
Q 024370 70 RGGEDAFFVSC---YNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV-------EDV------------------- 120 (268)
Q Consensus 70 ~~neDa~~v~~---~~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~-------~~~------------------- 120 (268)
+..||.+.+.. .+..|+||+|||||.+++++.++.+...+...+.... ..+
T Consensus 83 ~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred CcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 35678765433 2334999999999998887777766666653322100 000
Q ss_pred -cCcccHHHHHHHHHhc----------------cCCCCccceEEEEEeeCCeEEEEEecCCeeEEEE---CC---eeEEe
Q 024370 121 -EVNYDPQILMRKAHAA----------------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIR---KG---QITFS 177 (268)
Q Consensus 121 -~~~~~~~~l~~~a~~~----------------~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r---~g---~~~~l 177 (268)
.......+.+.+++.. ....-+|+||+++++.++.|||||+|||||+|.+ +| ..+||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 0012222333333221 2336689999999999999999999999999955 34 46899
Q ss_pred CccccccC---------CCCc----------c-----ccccccCCc---------------------------cccceEE
Q 024370 178 SSPQEHYF---------DCPY----------Q-----LSSEAVGQT---------------------------YLDAMVT 206 (268)
Q Consensus 178 t~dh~~~~---------~~p~----------~-----l~~~~~g~~---------------------------~~~~~~~ 206 (268)
|.||.-.. .||. | -..|++|+. ..+|.+.
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99994211 1332 1 011333321 2578999
Q ss_pred EEEcCCCCE-EEEecCCCCCCCChHHHHHHhhcC----CCHHHHHHHHHHHHHhc
Q 024370 207 TVELIEGDT-IVMGSDGLFDNVFDHEVVSMTTRF----IDVSEAGICSVFGSIYQ 256 (268)
Q Consensus 207 ~~~l~~gD~-liL~SDGl~d~l~~~ei~~~v~~~----~~~~~~a~~Lv~~A~~~ 256 (268)
..+|.|.|. +||+||||||.|+++|++++|.+. .+-+.+|+.||++|+.+
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~ 377 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGR 377 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhh
Confidence 999999775 889999999999999999999872 25568899999999876
No 12
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.90 E-value=2.7e-23 Score=175.28 Aligned_cols=174 Identities=20% Similarity=0.237 Sum_probs=107.5
Q ss_pred ecCCCCCCCCCCceEEEeecCC-eEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccC---cccHHHHHHHHH---
Q 024370 62 IPHPNKVERGGEDAFFVSCYNG-GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV---NYDPQILMRKAH--- 134 (268)
Q Consensus 62 ~s~~G~~r~~neDa~~v~~~~~-~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~a~--- 134 (268)
.+|.|+ +..|||++.+...+. .+++||||+|+...++.+|+.+++.+.+.+.+....... ......+.++..
T Consensus 3 ~sh~~~-~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 3 RSHRGR-GAPNQDAFGIRTDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp ----TT-SSS--EEEEEE-TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCCCCEEeeeCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 467776 899999999776544 488999999999999999999999998887765532111 111112222211
Q ss_pred --------hccCCCCccceEEEEEeeCCeEEEEEecCCeeEE-EECCeeEEeCccccccCCCCccccccccCCccccceE
Q 024370 135 --------AATSSVGSATVIVAMLERNGILKVASVGDCGLRI-IRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMV 205 (268)
Q Consensus 135 --------~~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l-~r~g~~~~lt~dh~~~~~~p~~l~~~~~g~~~~~~~~ 205 (268)
........+||++++++.++.++++|+||||+|+ .++|++..++.+|...+. .++......++....++
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 159 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--NQTRSLTGDDPEPDVQY 159 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH--HCTTSCCHHCCCTETEE
T ss_pred hhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh--hhhhccCccccccCCeE
Confidence 2345567799999999999999999999999975 579999999998853221 11111111123444678
Q ss_pred EEEEcCCCCEEEEecCCCCCCCChHH-HHHHhhc
Q 024370 206 TTVELIEGDTIVMGSDGLFDNVFDHE-VVSMTTR 238 (268)
Q Consensus 206 ~~~~l~~gD~liL~SDGl~d~l~~~e-i~~~v~~ 238 (268)
..++++++|.|+|||||||+.+.+.+ +..++.+
T Consensus 160 ~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 160 GSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp EEEE--TT-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred EEEEcCCCCEEEEECcCccccCCCHHHHHHHhhh
Confidence 88889999999999999999998655 6666655
No 13
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.86 E-value=5.6e-20 Score=152.75 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=128.2
Q ss_pred eEEecCCCCCCCCCCceEEEeecCC--eEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccCcccHHHHHHHHHhc
Q 024370 59 THLIPHPNKVERGGEDAFFVSCYNG--GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAA 136 (268)
Q Consensus 59 ~~~~s~~G~~r~~neDa~~v~~~~~--~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~a~~~ 136 (268)
.+....|+ ...++|.|.+.+.+. .+++|+||||+...+..++..+...+.+..... .....+++..+..
T Consensus 6 ~~~~~~p~--~~~~GD~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-------~~~~~~l~~~n~~ 76 (193)
T smart00331 6 IAQYYEDA--TQVGGDFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-------ISLSQILERLNRA 76 (193)
T ss_pred EEEEEcch--HhcCccEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHH
Confidence 44455565 678999997776543 599999999987777777777777665544331 1233444443322
Q ss_pred ---cCCCCccceEEEEEe--eCCeEEEEEecCCeeEEEE-CCeeEEeCccccccCCCCccccccccCCccccceEEEEEc
Q 024370 137 ---TSSVGSATVIVAMLE--RNGILKVASVGDCGLRIIR-KGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVEL 210 (268)
Q Consensus 137 ---~~~~~~gtt~~~~l~--~~~~l~ia~vGDsr~~l~r-~g~~~~lt~dh~~~~~~p~~l~~~~~g~~~~~~~~~~~~l 210 (268)
......++|++++++ .+++++++|+||+|+|+++ ++...+++.+. +...+.....+++...+++
T Consensus 77 l~~~~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~----------~~~lG~~~~~~~~~~~~~l 146 (193)
T smart00331 77 IYENGEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL----------GAPLGLEPDVEVDVRELTL 146 (193)
T ss_pred HHhcCCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC----------CceeeeCCCCcceeEEEee
Confidence 223457888888877 6789999999999999999 66655555431 1112222344577888999
Q ss_pred CCCCEEEEecCCCCCCCChHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 024370 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTRF--IDVSEAGICSVFGSI 254 (268)
Q Consensus 211 ~~gD~liL~SDGl~d~l~~~ei~~~v~~~--~~~~~~a~~Lv~~A~ 254 (268)
++||+|+|+||||||.++.+++.+++.+. .++++.++.+.++++
T Consensus 147 ~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 147 EPGDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred CCCCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999874 379999999988765
No 14
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-20 Score=163.28 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=94.8
Q ss_pred ccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccccC--------------------CCCccccccccCCc--
Q 024370 142 SATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF--------------------DCPYQLSSEAVGQT-- 199 (268)
Q Consensus 142 ~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~--------------------~~p~~l~~~~~g~~-- 199 (268)
+|||++++|+.+.+|++||.||||+++.|.|+.+-++.||++.- +.+..|++ ++|+.
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSR-A~GDHaY 408 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSR-AFGDHAY 408 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhh-hhhhhhh
Confidence 89999999999999999999999999999999999999997422 22223443 34431
Q ss_pred -------------cccceEEEEEcCC-CCEEEEecCCCCCCCChHHHHHHhhc----CCCHHHHHHHHHHHHHhcch
Q 024370 200 -------------YLDAMVTTVELIE-GDTIVMGSDGLFDNVFDHEVVSMTTR----FIDVSEAGICSVFGSIYQKI 258 (268)
Q Consensus 200 -------------~~~~~~~~~~l~~-gD~liL~SDGl~d~l~~~ei~~~v~~----~~~~~~~a~~Lv~~A~~~~~ 258 (268)
..-|++....|.+ ..|+|++|||||++|+.+|++++|+. .....+++++|++.+|+..|
T Consensus 409 K~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T 485 (542)
T KOG0699|consen 409 KKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPST 485 (542)
T ss_pred hcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCC
Confidence 2347888888887 45789999999999999999999965 45789999999999998754
No 15
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.77 E-value=6.3e-18 Score=146.12 Aligned_cols=175 Identities=21% Similarity=0.286 Sum_probs=113.6
Q ss_pred CeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhh-------------------------------ccCcccH--HHH
Q 024370 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-------------------------------VEVNYDP--QIL 129 (268)
Q Consensus 83 ~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-------------------------------~~~~~~~--~~l 129 (268)
..+|.+||||.|..++-+|++++.+++.+.+.+.+.. ..+.... .-.
T Consensus 144 ~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGA 223 (493)
T KOG1323|consen 144 GALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGA 223 (493)
T ss_pred ceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHH
Confidence 3499999999999999999999999888775433221 0111000 011
Q ss_pred HHHHHh----------ccCCCCccceEEEEEeeCCeEEEEEecCCeeEEEECCeeEEeCccccc----------cC----
Q 024370 130 MRKAHA----------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH----------YF---- 185 (268)
Q Consensus 130 ~~~a~~----------~~~~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~----------~~---- 185 (268)
++.++. ..-...+|+|+++++.--++||++|.||||++++|+++++.++.+-.+ .|
T Consensus 224 lEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~~Pe 303 (493)
T KOG1323|consen 224 LESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFRNPE 303 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhcChH
Confidence 222211 112244577777777777899999999999999999999999965310 00
Q ss_pred ---------CCCccccc------------------------------------------------cccCCc---------
Q 024370 186 ---------DCPYQLSS------------------------------------------------EAVGQT--------- 199 (268)
Q Consensus 186 ---------~~p~~l~~------------------------------------------------~~~g~~--------- 199 (268)
..|.++.. +-+|+.
T Consensus 304 LlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl 383 (493)
T KOG1323|consen 304 LLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNL 383 (493)
T ss_pred hhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeecCCc
Confidence 01111110 112221
Q ss_pred ------cccceEEEEEc-----CCCCEEEEecCCCCCCCChHHHHHHhhcC------CCH---HHHHHHHHHHHHhcc
Q 024370 200 ------YLDAMVTTVEL-----IEGDTIVMGSDGLFDNVFDHEVVSMTTRF------IDV---SEAGICSVFGSIYQK 257 (268)
Q Consensus 200 ------~~~~~~~~~~l-----~~gD~liL~SDGl~d~l~~~ei~~~v~~~------~~~---~~~a~~Lv~~A~~~~ 257 (268)
...|++...++ .++|++||+||||||+++++|+..++++. .|| ..+|+.|+..|..+.
T Consensus 384 ~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~ 461 (493)
T KOG1323|consen 384 SIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQ 461 (493)
T ss_pred ccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCcc
Confidence 12456655554 46889999999999999999999999762 133 367788887776553
No 16
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.72 E-value=1.1e-16 Score=157.50 Aligned_cols=189 Identities=17% Similarity=0.146 Sum_probs=137.5
Q ss_pred CCCcceeeeeeEEecCCCCCCCCCCceEEEeecCC--eEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccCcccH
Q 024370 49 SRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNG--GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDP 126 (268)
Q Consensus 49 ~~~~~~~~~~~~~~s~~G~~r~~neDa~~v~~~~~--~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~ 126 (268)
..+++.+.+|.+..+.+| +..++|+|.+.+.+. ..++|+||+|+...|..+|..+.+.+.+..+... .+
T Consensus 546 e~~~~~~~~g~a~~~k~g--~~vsGD~y~~~~l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~-------~~ 616 (764)
T TIGR02865 546 ETPKYHVSTGVARAAKDG--ELVSGDSYSFGKLSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF-------DR 616 (764)
T ss_pred cCCceeehhhHHHhcCCC--CcccCceEEEEEECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC-------CH
Confidence 345577788888888777 789999998776433 3789999999888887877777776665544322 12
Q ss_pred HHHHHHHHh---ccCCCCccceEEEEEe--eCCeEEEEEecCCeeEEEECCeeEEeCccccccCCCCccccccccCCccc
Q 024370 127 QILMRKAHA---ATSSVGSATVIVAMLE--RNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYL 201 (268)
Q Consensus 127 ~~l~~~a~~---~~~~~~~gtt~~~~l~--~~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~~~~~~p~~l~~~~~g~~~~ 201 (268)
..+++..+. ........+|+.++++ .++++.++|+|+++.|+.|++++..++..+ .| .|.....
T Consensus 617 ~~ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~-----lP------lGil~~~ 685 (764)
T TIGR02865 617 EVAIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSN-----LP------IGILDEV 685 (764)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCC-----ce------eEeccCC
Confidence 333333322 1123456788888777 468999999999999999999998887532 12 1112345
Q ss_pred cceEEEEEcCCCCEEEEecCCCCCCCChH-----HHHHHhhc--CCCHHHHHHHHHHHHHhcc
Q 024370 202 DAMVTTVELIEGDTIVMGSDGLFDNVFDH-----EVVSMTTR--FIDVSEAGICSVFGSIYQK 257 (268)
Q Consensus 202 ~~~~~~~~l~~gD~liL~SDGl~d~l~~~-----ei~~~v~~--~~~~~~~a~~Lv~~A~~~~ 257 (268)
+++....++++||+|+|+|||++|..++. .+.+++.+ ..+|++.++.|+++++...
T Consensus 686 ~~~~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~ 748 (764)
T TIGR02865 686 DVELVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELR 748 (764)
T ss_pred ccceEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 67778899999999999999999987643 37777765 3489999999999998653
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.45 E-value=7.5e-12 Score=103.63 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred CeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccCcccHHHHHHHHHhc----cCCCCccceEEEEEe--eCCeE
Q 024370 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAA----TSSVGSATVIVAMLE--RNGIL 156 (268)
Q Consensus 83 ~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~a~~~----~~~~~~gtt~~~~l~--~~~~l 156 (268)
..++.|+|+.|..-.+...+.. +...+....... ..+.++++..+.. ....+..+|++++.+ .++++
T Consensus 4 ~~~~~v~D~~GhG~~aa~~~~~----~~~~~~~~~~~~---~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 4 RYFIIVGDVSGHGVSAALLSAA----LASAIRELLDEG---LDPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGTL 76 (193)
T ss_dssp EEEEEEEEESSSSHHHHHHHHH----HHHHHHHHHHTT---TSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTEE
T ss_pred EEEEEEEEecCCCHHHHHHHHH----HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhhhccccceEEEEEecccceEE
Confidence 3589999999965444444444 434333333211 1255555554432 233335666666665 46789
Q ss_pred EEEEecCCeeEEEEC--CeeEEeCccccccCCCCccccccccCC-ccccceEEEEEcCCCCEEEEecCCCCCCCChH---
Q 024370 157 KVASVGDCGLRIIRK--GQITFSSSPQEHYFDCPYQLSSEAVGQ-TYLDAMVTTVELIEGDTIVMGSDGLFDNVFDH--- 230 (268)
Q Consensus 157 ~ia~vGDsr~~l~r~--g~~~~lt~dh~~~~~~p~~l~~~~~g~-~~~~~~~~~~~l~~gD~liL~SDGl~d~l~~~--- 230 (268)
+++|+|+++++++++ +....+... ...+|. ...++....+++++||+|+|+||||+|....+
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~------------~~~lG~~~~~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~~~ 144 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESE------------GPPLGIFEDIDYQEQEIQLEPGDRLLLYTDGLFEALNEDGEF 144 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCS------------SBBCSSSCTTCEEEEEEE--TTEEEEEECHHHCTTTCHHCHH
T ss_pred EEeCCCCCCEEEEeccccceeecccC------------ccceeeeccccccceEEEeccccEEEEeCCChhhccCCccch
Confidence 999999999999998 344444321 111232 44567788899999999999999999998543
Q ss_pred ----HHHHHhhc--CCCHHHHHHHHHHHHHh
Q 024370 231 ----EVVSMTTR--FIDVSEAGICSVFGSIY 255 (268)
Q Consensus 231 ----ei~~~v~~--~~~~~~~a~~Lv~~A~~ 255 (268)
++.+++.+ ..++++.++.|++.+..
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 175 (193)
T PF07228_consen 145 FGEERLLELLDENRGLSPQEIIDALLEAIDR 175 (193)
T ss_dssp CCCHHHHHHHHCHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 44677763 45899999999999886
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.55 E-value=8e-06 Score=74.66 Aligned_cols=169 Identities=13% Similarity=0.015 Sum_probs=105.5
Q ss_pred CCCCceEEEeecC--CeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccCcccHHHHHHHHHh---ccCCCCccc
Q 024370 70 RGGEDAFFVSCYN--GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA---ATSSVGSAT 144 (268)
Q Consensus 70 ~~neDa~~v~~~~--~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~a~~---~~~~~~~gt 144 (268)
..+.|.|-+...+ .-.++|+|..|-. +.|.+....... ..+.+.. .....+..+++..+. .......-+
T Consensus 160 ~vGGD~yd~~~~~~~~~~i~I~DvsG~G----v~aal~m~~~~~-~~~~~~~-~~~~~p~~~l~~~n~~~~~~~~~~~f~ 233 (367)
T COG2208 160 EVGGDYYDFIQLGEKRLRIGIGDVSGKG----VPAALLMLMPKL-ALRLLLE-SGPLDPADVLETLNRVLKQNLEEDMFV 233 (367)
T ss_pred HcCCceEEEEEECCcEEEEEEEeccCCC----HHHHHHHHHHHH-HHHHhhh-cccCCHHHHHHHHHHHHHhcccCCcEE
Confidence 3788998666544 3489999998843 333333222211 1122211 113455555554432 222223555
Q ss_pred eEEEEEe--eCCeEEEEEecCCeeEEEECCe---eEEeCccccccCCCCccccccccCCccccceEEEEEcCCCCEEEEe
Q 024370 145 VIVAMLE--RNGILKVASVGDCGLRIIRKGQ---ITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMG 219 (268)
Q Consensus 145 t~~~~l~--~~~~l~ia~vGDsr~~l~r~g~---~~~lt~dh~~~~~~p~~l~~~~~g~~~~~~~~~~~~l~~gD~liL~ 219 (268)
|+...++ ..+.+.++|+|.-.+++++.++ +..++.. +...|-.+...+.+....+++||.+++.
T Consensus 234 T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~-----------g~piG~~~~~~~~~~~~~l~~gd~lvl~ 302 (367)
T COG2208 234 TLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTAL-----------GLPIGLLPDYQYEVASLQLEPGDLLVLY 302 (367)
T ss_pred EEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCC-----------CceeeecCCccchheeEEecCCCEEEEE
Confidence 6555555 4679999999999999999644 3444321 1222333566788888999999999999
Q ss_pred cCCCCC-------CCChHHHHHHhhc--CCCHHHHHHHHHHHHHh
Q 024370 220 SDGLFD-------NVFDHEVVSMTTR--FIDVSEAGICSVFGSIY 255 (268)
Q Consensus 220 SDGl~d-------~l~~~ei~~~v~~--~~~~~~~a~~Lv~~A~~ 255 (268)
|||+.+ .+..+...+++.. ..+++++++.+.+....
T Consensus 303 tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~ 347 (367)
T COG2208 303 TDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEE 347 (367)
T ss_pred cCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999998 4556677777763 34788888888876653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.43 E-value=6.9e-07 Score=87.56 Aligned_cols=170 Identities=15% Similarity=0.068 Sum_probs=104.4
Q ss_pred CCeEEEEecCCCchhhccccHHHHHHHHHHHHhhhhhhccC-cccHHHHHHHHHhc--cCCCCccceEEEEEee------
Q 024370 82 NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV-NYDPQILMRKAHAA--TSSVGSATVIVAMLER------ 152 (268)
Q Consensus 82 ~~~~~~VaDG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~a~~~--~~~~~~gtt~~~~l~~------ 152 (268)
....|+.+||-+.. .-.+.+...+.+...+.++...- .......+...+.+ .....-|..++.+.+.
T Consensus 550 ~~a~~g~~dgs~n~----~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~ 625 (1081)
T KOG0618|consen 550 PQATFGCFDGSRNS----RVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSP 625 (1081)
T ss_pred CcceEEEEcCCCch----hHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCc
Confidence 34599999996644 34444455554444433321100 00011111111111 1111123333444442
Q ss_pred --CCeEEEEEecCCeeEEEECCeeEEeCcccc---------------ccCCCCcc-----ccccccCCc------cccce
Q 024370 153 --NGILKVASVGDCGLRIIRKGQITFSSSPQE---------------HYFDCPYQ-----LSSEAVGQT------YLDAM 204 (268)
Q Consensus 153 --~~~l~ia~vGDsr~~l~r~g~~~~lt~dh~---------------~~~~~p~~-----l~~~~~g~~------~~~~~ 204 (268)
..++.+||+|+|.++++++|+-.++|...- -.++...+ -.+|..|.. -+.|.
T Consensus 626 asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Ph 705 (1081)
T KOG0618|consen 626 ASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPH 705 (1081)
T ss_pred ccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccccccCCCc
Confidence 247999999999999999998777775321 11111111 112444432 34688
Q ss_pred EEEEEcCC-CCEEEEecCCCCCCCChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 024370 205 VTTVELIE-GDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGICSVFGSIY 255 (268)
Q Consensus 205 ~~~~~l~~-gD~liL~SDGl~d~l~~~ei~~~v~~~~~~~~~a~~Lv~~A~~ 255 (268)
+..+.+.+ +++||+++-+||++|+-+++++.+++..+|=.||++|.+.|.+
T Consensus 706 v~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqS 757 (1081)
T KOG0618|consen 706 VSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQS 757 (1081)
T ss_pred eeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 89999886 5579999999999999999999999888999999999999875
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=74.93 E-value=40 Score=29.76 Aligned_cols=101 Identities=11% Similarity=-0.014 Sum_probs=51.6
Q ss_pred CCCCceEEEeecC-C-eEEEEec--CCCchhhccccHHHHHHHHHH-HHhhhh-hhccCcccHHHHHHHHHhc---cCCC
Q 024370 70 RGGEDAFFVSCYN-G-GVIAVAD--GVSGWAEQNVDPSLFSRELMA-NASYFV-EDVEVNYDPQILMRKAHAA---TSSV 140 (268)
Q Consensus 70 ~~neDa~~v~~~~-~-~~~~VaD--G~Gg~~~~~~as~~~~~~l~~-~~~~~~-~~~~~~~~~~~l~~~a~~~---~~~~ 140 (268)
..+.|.+-+...+ . -.|.++| |||++ | ..+......+.. .+.... .+......+.++++..+.. ....
T Consensus 148 ~~~GD~~d~~~l~~~~~~~~~~DvsGhg~h--g-~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~ 224 (303)
T PRK10693 148 DKPGLVLDIAALSDNDLAFYCLDVTRAGDN--G-VLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLP 224 (303)
T ss_pred CCCccEEeeeecCCCcEEEEEEecCCCCcc--c-HHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCC
Confidence 3578888665533 2 3667777 44433 2 333444444222 333221 1111112456666655443 2222
Q ss_pred CccceEEEEEe--eCCeEEEEEecCCeeEEEECCee
Q 024370 141 GSATVIVAMLE--RNGILKVASVGDCGLRIIRKGQI 174 (268)
Q Consensus 141 ~~gtt~~~~l~--~~~~l~ia~vGDsr~~l~r~g~~ 174 (268)
+. -|++..++ ..+++.+++.|....++..++++
T Consensus 225 ~~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 225 GQ-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred ce-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 23 34444444 45689999999999885445544
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=73.92 E-value=1.9 Score=29.75 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.6
Q ss_pred CCCCEEEEecCCCCCCCChHHHH
Q 024370 211 IEGDTIVMGSDGLFDNVFDHEVV 233 (268)
Q Consensus 211 ~~gD~liL~SDGl~d~l~~~ei~ 233 (268)
++|.++++++||+|=-+....+.
T Consensus 25 ~~G~Rllva~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 25 RPGHRLLVASNGVFLEVRRPWLH 47 (72)
T ss_pred cCCcEEEEecCcEEEEEechHHH
Confidence 47999999999999776665554
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=47.99 E-value=15 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.7
Q ss_pred EcCCCCEEEEecCCCCCCCChHHHHHHhhcC
Q 024370 209 ELIEGDTIVMGSDGLFDNVFDHEVVSMTTRF 239 (268)
Q Consensus 209 ~l~~gD~liL~SDGl~d~l~~~ei~~~v~~~ 239 (268)
-+.+||-++|+.||++-.+...+..+-+...
T Consensus 21 ~l~~~D~vlL~qdGV~aAl~~~~~~~sl~~~ 51 (96)
T COG2168 21 LLTEGDAVLLLQDGVYAALKGNRYLASLRES 51 (96)
T ss_pred HhcccCeEEEEcccchhhhcCcHHHHHHhcC
Confidence 3578999999999999998887777777653
No 23
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=38.89 E-value=66 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=18.9
Q ss_pred EEEEcCCCCEEEEec--CCCCCCCC--hHHHHHHhhc
Q 024370 206 TTVELIEGDTIVMGS--DGLFDNVF--DHEVVSMTTR 238 (268)
Q Consensus 206 ~~~~l~~gD~liL~S--DGl~d~l~--~~ei~~~v~~ 238 (268)
...++.||+.|++.- +-+.+-++ |++|++++.+
T Consensus 189 ~~~~l~PG~~I~Vp~~~~~~~~~~~~ln~~I~~ll~~ 225 (229)
T PF06251_consen 189 QHQELAPGATIYVPFDTSSLPPDFSSLNQDIVELLAN 225 (229)
T ss_dssp -EEE--TT-EEEE-B-TTTS-GGGTTHHHHHHHHHCT
T ss_pred CCCCCCCCCEEEEcCCccccCchHHHHHHHHHHHHHh
Confidence 345789999999977 44544444 5788888765
No 24
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=33.53 E-value=23 Score=29.36 Aligned_cols=46 Identities=9% Similarity=-0.060 Sum_probs=30.9
Q ss_pred CCCCEEEEecCCCCCCCChHHHHHHhhc---------------------CCCHHHHHHHHHHHHHhc
Q 024370 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTR---------------------FIDVSEAGICSVFGSIYQ 256 (268)
Q Consensus 211 ~~gD~liL~SDGl~d~l~~~ei~~~v~~---------------------~~~~~~~a~~Lv~~A~~~ 256 (268)
++|.++++++||+|=-+...++.-+..- ..=+.+..++++++|...
T Consensus 24 ~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 24 KPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred cCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 5699999999999977666555443321 012556677777777654
No 25
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=32.04 E-value=65 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.4
Q ss_pred CChHHHHHHhhc-CCCHHHHHHHHHH
Q 024370 227 VFDHEVVSMTTR-FIDVSEAGICSVF 251 (268)
Q Consensus 227 l~~~ei~~~v~~-~~~~~~~a~~Lv~ 251 (268)
-+++||-.++.+ ..||.++++.|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 588999999987 4599999999986
No 26
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=31.55 E-value=94 Score=25.66 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=34.1
Q ss_pred CCCCEEEEecCCCC-----------CCCChHHHHHHhhcC----CCHHHHHHHHHHHHHhc
Q 024370 211 IEGDTIVMGSDGLF-----------DNVFDHEVVSMTTRF----IDVSEAGICSVFGSIYQ 256 (268)
Q Consensus 211 ~~gD~liL~SDGl~-----------d~l~~~ei~~~v~~~----~~~~~~a~~Lv~~A~~~ 256 (268)
+-+|.++..|.|+| |+|.++..-+.+.+. .=|+++|+.|++.-..+
T Consensus 69 DIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~R 129 (237)
T COG3700 69 DIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred ccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhc
Confidence 44688899999998 666677776776552 24999999999875544
No 27
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.02 E-value=97 Score=16.64 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=15.7
Q ss_pred EeeCCeEEEEEecCCeeEEE
Q 024370 150 LERNGILKVASVGDCGLRII 169 (268)
Q Consensus 150 l~~~~~l~ia~vGDsr~~l~ 169 (268)
+..++.+|++-.|..|+..+
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33788999999998887653
No 28
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=28.13 E-value=63 Score=21.21 Aligned_cols=42 Identities=14% Similarity=-0.071 Sum_probs=31.3
Q ss_pred CCChHHHHHHhhcCCCHHHHHHHHHHHHHhcchhhhhhhhcc
Q 024370 226 NVFDHEVVSMTTRFIDVSEAGICSVFGSIYQKIIYSVAQWFT 267 (268)
Q Consensus 226 ~l~~~ei~~~v~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~ 267 (268)
+|+.+|+++.+.+....+-..-.+|-.-+.+..|.--.+|++
T Consensus 15 yMsk~E~v~~L~~~a~I~P~~T~~VW~~LekeN~eFF~aY~~ 56 (57)
T TIGR01589 15 YMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKT 56 (57)
T ss_pred HCCHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888877755666667777888888888877777764
No 29
>PRK03982 heat shock protein HtpX; Provisional
Probab=22.66 E-value=90 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCCEEEEecCCCCCCCChHHHHHHhhc
Q 024370 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (268)
Q Consensus 211 ~~gD~liL~SDGl~d~l~~~ei~~~v~~ 238 (268)
.+.+.+|..|||+.+.++++|+..++..
T Consensus 104 ~~~~~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 104 DPKHAVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred CCCCeEEEeehHHHhhCCHHHHHHHHHH
Confidence 4556788899999999999999998865
No 30
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=3.8e+02 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCCccceEEEEEeeCCeEEEEEecCCeeEE
Q 024370 139 SVGSATVIVAMLERNGILKVASVGDCGLRI 168 (268)
Q Consensus 139 ~~~~gtt~~~~l~~~~~l~ia~vGDsr~~l 168 (268)
..|+|+-+.-+-...+.||.-|.||-.++.
T Consensus 89 eEGSGAfIaGltYGeG~LytKn~g~h~vFW 118 (205)
T COG5400 89 EEGSGAFIAGLTYGEGTLYTKNAGDHKVFW 118 (205)
T ss_pred cccccceEeeeeeccceEEecCCCCcceEe
Confidence 357777766666677899999999988775
Done!