Query 024372
Match_columns 268
No_of_seqs 136 out of 1748
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0278 Serine/threonine kinas 100.0 2.3E-49 5E-54 302.2 16.9 261 4-266 2-262 (334)
2 KOG0272 U4/U6 small nuclear ri 100.0 6E-43 1.3E-47 283.8 21.5 247 14-265 173-425 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.4E-47 279.5 22.4 245 12-263 111-444 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-43 9.6E-48 284.6 18.5 248 5-256 206-458 (459)
5 KOG0279 G protein beta subunit 100.0 3.2E-41 7E-46 261.0 27.6 251 2-258 48-313 (315)
6 KOG0279 G protein beta subunit 100.0 1.9E-40 4E-45 256.8 26.4 251 11-266 10-270 (315)
7 KOG0286 G-protein beta subunit 100.0 4.6E-37 1E-41 239.4 29.7 252 9-266 48-311 (343)
8 KOG0316 Conserved WD40 repeat- 100.0 1.2E-37 2.6E-42 236.2 23.7 248 10-265 11-264 (307)
9 KOG0295 WD40 repeat-containing 100.0 1E-37 2.2E-42 249.3 20.8 244 9-256 143-404 (406)
10 KOG0271 Notchless-like WD40 re 100.0 1.8E-37 4E-42 249.4 22.3 245 9-256 193-479 (480)
11 KOG0263 Transcription initiati 100.0 5.7E-37 1.2E-41 265.8 24.7 240 13-258 375-649 (707)
12 KOG0282 mRNA splicing factor [ 100.0 7.4E-38 1.6E-42 258.1 16.0 241 12-256 210-503 (503)
13 KOG0263 Transcription initiati 100.0 5.6E-37 1.2E-41 265.8 21.0 212 1-217 436-650 (707)
14 KOG0315 G-protein beta subunit 100.0 1.5E-34 3.3E-39 220.9 27.5 246 15-266 38-296 (311)
15 KOG0266 WD40 repeat-containing 100.0 7.3E-35 1.6E-39 255.2 29.1 246 15-265 158-416 (456)
16 KOG0273 Beta-transducin family 100.0 9.6E-35 2.1E-39 239.1 26.0 245 15-267 234-491 (524)
17 KOG0265 U5 snRNP-specific prot 100.0 1.4E-34 3E-39 226.3 24.1 249 7-262 37-300 (338)
18 KOG0286 G-protein beta subunit 100.0 6.5E-34 1.4E-38 221.9 27.7 234 16-256 97-343 (343)
19 KOG0285 Pleiotropic regulator 100.0 5.7E-35 1.2E-39 233.4 22.2 246 11-262 146-393 (460)
20 KOG0293 WD40 repeat-containing 100.0 4.9E-35 1.1E-39 237.5 21.8 252 11-267 219-479 (519)
21 KOG0276 Vesicle coat complex C 100.0 3.8E-35 8.3E-40 248.7 21.6 248 12-262 9-261 (794)
22 KOG0291 WD40-repeat-containing 100.0 6.8E-34 1.5E-38 245.5 28.5 248 13-266 347-620 (893)
23 KOG0283 WD40 repeat-containing 100.0 2.2E-34 4.9E-39 251.4 23.1 237 14-258 265-576 (712)
24 KOG0643 Translation initiation 100.0 2.4E-34 5.1E-39 221.8 19.5 246 8-258 2-317 (327)
25 KOG0284 Polyadenylation factor 100.0 3.7E-35 8E-40 237.7 15.0 243 17-264 97-343 (464)
26 KOG0315 G-protein beta subunit 100.0 3.9E-33 8.5E-38 213.2 25.1 225 31-260 10-247 (311)
27 KOG0319 WD40-repeat-containing 100.0 4.9E-34 1.1E-38 245.8 21.9 248 4-259 354-620 (775)
28 KOG0273 Beta-transducin family 100.0 7.5E-33 1.6E-37 227.9 26.8 243 10-258 270-523 (524)
29 KOG0266 WD40 repeat-containing 100.0 9.9E-33 2.1E-37 241.8 28.3 240 13-257 200-453 (456)
30 KOG0295 WD40 repeat-containing 100.0 9.9E-34 2.1E-38 226.5 19.7 248 12-265 104-371 (406)
31 KOG0318 WD40 repeat stress pro 100.0 1.6E-31 3.4E-36 222.8 31.1 242 13-259 187-561 (603)
32 cd00200 WD40 WD40 domain, foun 100.0 1.8E-31 3.9E-36 218.3 31.2 250 11-266 4-257 (289)
33 PLN00181 protein SPA1-RELATED; 100.0 4.1E-31 8.9E-36 246.7 36.0 240 13-257 529-792 (793)
34 PTZ00421 coronin; Provisional 100.0 8.9E-31 1.9E-35 229.4 32.2 226 9-237 68-313 (493)
35 cd00200 WD40 WD40 domain, foun 100.0 1.6E-30 3.6E-35 212.6 31.4 242 9-256 44-289 (289)
36 KOG0291 WD40-repeat-containing 100.0 3.6E-31 7.8E-36 228.8 28.5 250 9-263 300-555 (893)
37 KOG0284 Polyadenylation factor 100.0 2.4E-33 5.1E-38 227.3 13.9 245 11-262 133-385 (464)
38 KOG1446 Histone H3 (Lys4) meth 100.0 4E-30 8.6E-35 202.8 30.9 255 4-266 2-270 (311)
39 KOG0281 Beta-TrCP (transducin 100.0 2.7E-33 5.8E-38 223.3 13.0 231 15-262 196-432 (499)
40 KOG0277 Peroxisomal targeting 100.0 4.5E-32 9.8E-37 207.9 19.1 240 15-257 59-308 (311)
41 KOG0274 Cdc4 and related F-box 100.0 2.3E-31 4.9E-36 233.8 26.1 242 12-265 245-489 (537)
42 KOG0276 Vesicle coat complex C 100.0 1.4E-31 3.1E-36 227.1 23.5 242 6-252 45-293 (794)
43 KOG0645 WD40 repeat protein [G 100.0 2.7E-30 5.8E-35 199.8 28.0 244 6-258 4-261 (312)
44 PLN00181 protein SPA1-RELATED; 100.0 3.1E-30 6.8E-35 240.8 34.2 244 13-263 480-743 (793)
45 KOG0296 Angio-associated migra 100.0 6.5E-31 1.4E-35 210.5 25.2 253 8-267 56-365 (399)
46 KOG0281 Beta-TrCP (transducin 100.0 4.9E-33 1.1E-37 221.8 12.7 245 2-262 223-481 (499)
47 KOG0319 WD40-repeat-containing 100.0 5E-31 1.1E-35 227.3 25.2 250 12-266 319-585 (775)
48 KOG0645 WD40 repeat protein [G 100.0 2.5E-30 5.4E-35 199.9 25.7 238 13-258 58-311 (312)
49 KOG0285 Pleiotropic regulator 100.0 2.3E-31 5E-36 212.8 20.6 240 11-257 188-438 (460)
50 KOG0265 U5 snRNP-specific prot 100.0 1E-30 2.2E-35 204.7 23.3 244 6-255 80-335 (338)
51 PTZ00421 coronin; Provisional 100.0 1.4E-29 3E-34 222.0 32.3 247 14-265 18-297 (493)
52 KOG0292 Vesicle coat complex C 100.0 3.4E-31 7.4E-36 232.4 21.9 250 12-266 5-288 (1202)
53 KOG0640 mRNA cleavage stimulat 100.0 6.4E-31 1.4E-35 206.9 21.2 214 10-227 106-346 (430)
54 KOG0310 Conserved WD40 repeat- 100.0 5.1E-31 1.1E-35 218.0 20.5 248 13-265 23-275 (487)
55 KOG0313 Microtubule binding pr 100.0 2.3E-30 4.9E-35 208.4 23.6 245 9-261 98-379 (423)
56 KOG0310 Conserved WD40 repeat- 100.0 1E-30 2.2E-35 216.3 21.0 237 15-258 67-309 (487)
57 KOG0294 WD40 repeat-containing 100.0 8.8E-30 1.9E-34 200.7 24.5 243 9-260 36-283 (362)
58 KOG1407 WD40 repeat protein [F 100.0 7.8E-30 1.7E-34 196.3 22.6 247 12-265 16-268 (313)
59 KOG0313 Microtubule binding pr 100.0 1.5E-29 3.2E-34 203.7 24.7 244 8-257 136-417 (423)
60 KOG0275 Conserved WD40 repeat- 100.0 7.7E-31 1.7E-35 207.8 17.0 244 14-264 211-473 (508)
61 PTZ00420 coronin; Provisional 100.0 1.1E-28 2.3E-33 217.7 32.1 223 36-261 49-296 (568)
62 KOG0274 Cdc4 and related F-box 100.0 9.2E-30 2E-34 223.7 25.2 239 15-266 207-449 (537)
63 KOG0278 Serine/threonine kinas 100.0 4.6E-31 1E-35 202.1 14.5 243 11-262 54-301 (334)
64 KOG0268 Sof1-like rRNA process 100.0 1.8E-31 4E-36 213.6 12.8 255 3-266 51-310 (433)
65 PTZ00420 coronin; Provisional 100.0 1E-28 2.2E-33 217.9 31.4 227 9-238 67-317 (568)
66 KOG0292 Vesicle coat complex C 100.0 7.5E-30 1.6E-34 224.0 23.1 240 12-257 47-320 (1202)
67 KOG0288 WD40 repeat protein Ti 100.0 1.6E-30 3.4E-35 211.2 15.4 248 10-266 169-425 (459)
68 KOG0305 Anaphase promoting com 100.0 1.2E-28 2.6E-33 210.2 26.0 240 13-259 214-462 (484)
69 KOG0289 mRNA splicing factor [ 100.0 7.9E-29 1.7E-33 202.5 22.8 243 10-257 255-505 (506)
70 KOG0318 WD40 repeat stress pro 100.0 5.7E-28 1.2E-32 201.7 27.5 251 5-262 48-354 (603)
71 KOG0288 WD40 repeat protein Ti 100.0 2.1E-29 4.5E-34 204.7 17.6 242 5-255 208-458 (459)
72 KOG0282 mRNA splicing factor [ 100.0 2.7E-30 5.9E-35 213.5 11.6 210 52-264 205-468 (503)
73 KOG0296 Angio-associated migra 100.0 1.6E-27 3.4E-32 191.1 26.5 248 7-258 97-398 (399)
74 KOG0300 WD40 repeat-containing 100.0 2.2E-28 4.7E-33 193.4 20.2 250 9-265 141-434 (481)
75 KOG0293 WD40 repeat-containing 100.0 2.3E-28 4.9E-33 198.9 20.3 246 6-258 259-513 (519)
76 KOG0277 Peroxisomal targeting 100.0 6.9E-29 1.5E-33 190.5 15.0 213 1-215 88-308 (311)
77 KOG0647 mRNA export protein (c 100.0 1.7E-27 3.6E-32 186.9 21.9 233 14-249 25-315 (347)
78 KOG0308 Conserved WD40 repeat- 100.0 4.5E-28 9.7E-33 206.7 20.0 243 14-260 19-287 (735)
79 KOG0289 mRNA splicing factor [ 100.0 3.4E-27 7.3E-32 193.0 23.1 235 17-256 220-460 (506)
80 KOG0316 Conserved WD40 repeat- 100.0 1.9E-27 4.2E-32 180.8 19.9 236 11-257 54-298 (307)
81 KOG0301 Phospholipase A2-activ 100.0 2.3E-27 5E-32 203.6 22.6 233 11-258 52-288 (745)
82 KOG0306 WD40-repeat-containing 100.0 2.2E-27 4.7E-32 205.4 22.0 223 32-257 425-663 (888)
83 KOG0264 Nucleosome remodeling 100.0 7.5E-27 1.6E-31 191.9 22.4 243 14-258 122-404 (422)
84 KOG0275 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 189.6 15.7 240 13-256 260-507 (508)
85 KOG0299 U3 snoRNP-associated p 100.0 2.7E-26 5.9E-31 188.9 22.6 245 10-260 136-412 (479)
86 KOG0300 WD40 repeat-containing 100.0 2.2E-26 4.7E-31 182.1 20.1 246 8-259 182-477 (481)
87 KOG1036 Mitotic spindle checkp 100.0 6.9E-26 1.5E-30 178.3 22.5 238 16-264 13-268 (323)
88 KOG0640 mRNA cleavage stimulat 100.0 1.2E-26 2.6E-31 183.0 18.2 211 55-267 106-344 (430)
89 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-24 2.8E-29 180.7 31.5 248 11-266 26-287 (300)
90 KOG0283 WD40 repeat-containing 99.9 2.3E-26 5E-31 201.4 19.5 198 13-216 366-576 (712)
91 KOG1446 Histone H3 (Lys4) meth 99.9 2.7E-24 5.8E-29 169.9 28.6 235 15-257 55-302 (311)
92 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.4E-30 193.4 22.5 234 11-258 9-249 (745)
93 KOG0641 WD40 repeat protein [G 99.9 3.8E-24 8.2E-29 162.3 28.0 245 6-258 23-303 (350)
94 KOG0269 WD40 repeat-containing 99.9 7.3E-27 1.6E-31 202.7 15.1 238 19-259 90-341 (839)
95 KOG4283 Transcription-coupled 99.9 3.9E-25 8.4E-30 173.3 23.2 204 13-219 40-279 (397)
96 KOG0772 Uncharacterized conser 99.9 9.1E-26 2E-30 188.3 20.8 250 10-264 161-451 (641)
97 KOG0772 Uncharacterized conser 99.9 1.3E-25 2.7E-30 187.4 20.9 250 1-255 199-484 (641)
98 KOG4328 WD40 protein [Function 99.9 5.9E-25 1.3E-29 181.0 22.8 262 2-265 172-457 (498)
99 KOG0270 WD40 repeat-containing 99.9 7.4E-25 1.6E-29 179.8 20.8 234 29-263 190-454 (463)
100 KOG1332 Vesicle coat complex C 99.9 4.9E-25 1.1E-29 168.5 18.5 249 13-265 8-294 (299)
101 KOG0264 Nucleosome remodeling 99.9 5.9E-25 1.3E-29 180.8 19.9 205 10-216 171-404 (422)
102 KOG0973 Histone transcription 99.9 3.2E-24 7E-29 192.5 24.9 254 6-264 3-318 (942)
103 KOG0299 U3 snoRNP-associated p 99.9 2.8E-24 6E-29 177.1 21.2 228 14-249 200-447 (479)
104 KOG0306 WD40-repeat-containing 99.9 5.8E-24 1.2E-28 184.4 24.2 247 10-264 367-628 (888)
105 KOG1407 WD40 repeat protein [F 99.9 3.5E-23 7.7E-28 159.8 24.0 241 3-249 51-293 (313)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-22 7.4E-27 166.1 30.5 230 32-265 2-244 (300)
107 KOG0294 WD40 repeat-containing 99.9 2.2E-23 4.7E-28 164.7 21.7 211 2-218 69-283 (362)
108 KOG0302 Ribosome Assembly prot 99.9 3.7E-23 8.1E-28 166.9 21.9 236 14-251 149-432 (440)
109 KOG0267 Microtubule severing p 99.9 3.7E-25 8E-30 191.0 10.3 196 11-211 65-262 (825)
110 KOG0641 WD40 repeat protein [G 99.9 8.4E-22 1.8E-26 149.6 27.0 237 14-257 87-348 (350)
111 KOG1274 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 179.1 26.2 239 13-259 10-263 (933)
112 KOG0303 Actin-binding protein 99.9 3.1E-23 6.6E-28 168.3 19.9 224 9-237 75-319 (472)
113 KOG1036 Mitotic spindle checkp 99.9 2E-22 4.3E-27 158.8 23.6 227 13-248 51-294 (323)
114 KOG0973 Histone transcription 99.9 5.9E-23 1.3E-27 184.5 23.3 249 7-260 59-357 (942)
115 KOG1273 WD40 repeat protein [G 99.9 6.5E-23 1.4E-27 162.2 20.6 241 19-266 26-288 (405)
116 KOG0308 Conserved WD40 repeat- 99.9 9E-24 2E-28 180.6 16.2 243 10-258 67-327 (735)
117 KOG0267 Microtubule severing p 99.9 1.3E-24 2.8E-29 187.7 10.8 231 14-250 26-260 (825)
118 KOG0302 Ribosome Assembly prot 99.9 3.9E-23 8.3E-28 166.8 17.9 170 6-177 201-379 (440)
119 KOG0305 Anaphase promoting com 99.9 3.6E-22 7.8E-27 170.7 24.1 232 31-266 188-427 (484)
120 KOG0270 WD40 repeat-containing 99.9 4.2E-23 9.1E-28 169.6 17.4 207 13-221 240-454 (463)
121 KOG0268 Sof1-like rRNA process 99.9 3.1E-23 6.8E-28 166.6 15.9 247 8-267 101-354 (433)
122 KOG1332 Vesicle coat complex C 99.9 6.6E-23 1.4E-27 156.9 16.7 204 11-215 51-285 (299)
123 KOG0643 Translation initiation 99.9 3.4E-21 7.3E-26 149.4 22.8 206 57-266 6-228 (327)
124 KOG0321 WD40 repeat-containing 99.9 7.3E-22 1.6E-26 168.7 20.7 238 21-259 54-348 (720)
125 KOG0307 Vesicle coat complex C 99.9 5.6E-23 1.2E-27 185.5 13.1 243 21-266 11-292 (1049)
126 KOG1408 WD40 repeat protein [F 99.9 2E-21 4.4E-26 168.1 21.2 261 3-266 356-679 (1080)
127 KOG1408 WD40 repeat protein [F 99.9 1.1E-21 2.3E-26 169.8 19.1 240 14-258 457-713 (1080)
128 KOG0646 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 155.8 23.7 233 32-265 51-314 (476)
129 KOG0269 WD40 repeat-containing 99.9 5E-22 1.1E-26 172.9 15.7 185 11-197 128-319 (839)
130 KOG2445 Nuclear pore complex c 99.9 5.4E-20 1.2E-24 145.2 25.4 240 13-257 10-317 (361)
131 KOG0647 mRNA export protein (c 99.9 3.6E-21 7.9E-26 151.4 18.6 193 6-203 62-309 (347)
132 KOG0646 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 159.2 19.3 204 16-225 81-316 (476)
133 KOG0321 WD40 repeat-containing 99.9 3.8E-21 8.3E-26 164.4 19.8 244 13-260 97-393 (720)
134 KOG2096 WD40 repeat protein [G 99.9 1.8E-20 3.8E-25 148.7 22.1 238 12-256 82-400 (420)
135 KOG0642 Cell-cycle nuclear pro 99.9 2.2E-21 4.9E-26 163.7 17.6 246 10-261 288-564 (577)
136 KOG1034 Transcriptional repres 99.9 2.9E-21 6.4E-26 153.5 16.6 241 14-258 87-383 (385)
137 KOG0307 Vesicle coat complex C 99.9 7.8E-22 1.7E-26 178.2 14.4 247 14-260 62-329 (1049)
138 KOG2055 WD40 repeat protein [G 99.9 5.4E-20 1.2E-24 152.1 23.9 196 15-216 212-417 (514)
139 KOG0639 Transducin-like enhanc 99.9 2.7E-21 5.9E-26 161.4 16.4 237 14-257 463-703 (705)
140 KOG2919 Guanine nucleotide-bin 99.9 8.7E-20 1.9E-24 145.0 22.4 243 18-265 51-335 (406)
141 KOG2048 WD40 repeat protein [G 99.9 2.6E-19 5.7E-24 154.1 27.0 240 15-260 24-277 (691)
142 KOG0639 Transducin-like enhanc 99.9 5.4E-21 1.2E-25 159.6 15.6 244 13-263 416-668 (705)
143 KOG4328 WD40 protein [Function 99.9 5.3E-20 1.1E-24 152.0 20.7 252 3-258 221-495 (498)
144 KOG4378 Nuclear protein COP1 [ 99.9 3.7E-20 7.9E-25 154.5 18.9 243 17-265 35-288 (673)
145 KOG0303 Actin-binding protein 99.9 3.7E-20 8E-25 150.5 17.4 202 56-261 76-297 (472)
146 KOG0649 WD40 repeat protein [G 99.9 4.7E-19 1E-23 136.0 21.2 227 20-257 14-273 (325)
147 KOG1539 WD repeat protein [Gen 99.8 2.3E-19 5E-24 157.6 21.7 259 2-266 275-614 (910)
148 KOG1188 WD40 repeat protein [G 99.8 1E-19 2.2E-24 145.5 17.5 186 32-217 41-243 (376)
149 KOG2048 WD40 repeat protein [G 99.8 2.7E-18 5.7E-23 148.0 26.2 237 11-256 63-317 (691)
150 KOG0650 WD40 repeat nucleolar 99.8 3.5E-19 7.7E-24 151.5 20.5 240 8-256 392-678 (733)
151 KOG4378 Nuclear protein COP1 [ 99.8 1.5E-19 3.3E-24 150.8 17.8 206 32-237 92-303 (673)
152 KOG4283 Transcription-coupled 99.8 1.1E-18 2.3E-23 137.3 21.0 239 14-258 99-365 (397)
153 KOG1274 WD40 repeat protein [G 99.8 1.9E-18 4.2E-23 153.3 24.7 205 7-217 47-263 (933)
154 KOG1539 WD repeat protein [Gen 99.8 3E-19 6.4E-24 156.9 19.2 196 17-217 449-649 (910)
155 COG2319 FOG: WD40 repeat [Gene 99.8 6E-17 1.3E-21 138.9 33.3 250 9-265 148-407 (466)
156 COG2319 FOG: WD40 repeat [Gene 99.8 5E-17 1.1E-21 139.5 32.6 250 11-265 60-321 (466)
157 KOG1273 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 137.6 19.5 249 2-258 51-322 (405)
158 KOG2106 Uncharacterized conser 99.8 1.7E-17 3.8E-22 138.9 26.6 229 17-258 247-521 (626)
159 KOG1063 RNA polymerase II elon 99.8 2.3E-18 4.9E-23 148.8 21.5 255 5-261 180-605 (764)
160 KOG1538 Uncharacterized conser 99.8 1.5E-18 3.2E-23 149.7 20.0 234 18-258 14-293 (1081)
161 KOG2445 Nuclear pore complex c 99.8 3.3E-17 7.1E-22 129.6 24.2 213 13-227 56-332 (361)
162 KOG1034 Transcriptional repres 99.8 2.8E-19 6.1E-24 142.3 12.3 200 11-215 130-382 (385)
163 KOG1587 Cytoplasmic dynein int 99.8 1.4E-17 3.1E-22 146.2 24.2 248 8-258 234-516 (555)
164 KOG2919 Guanine nucleotide-bin 99.8 3E-18 6.6E-23 136.3 17.9 231 16-249 104-361 (406)
165 KOG2096 WD40 repeat protein [G 99.8 5.5E-18 1.2E-22 134.7 18.8 195 15-215 186-401 (420)
166 KOG0290 Conserved WD40 repeat- 99.8 3.9E-18 8.4E-23 134.0 17.5 197 14-212 148-361 (364)
167 KOG2106 Uncharacterized conser 99.8 1.5E-16 3.2E-21 133.4 27.8 242 15-265 199-485 (626)
168 KOG1310 WD40 repeat protein [G 99.8 2.5E-18 5.5E-23 145.2 16.8 214 10-226 44-313 (758)
169 KOG2055 WD40 repeat protein [G 99.8 3.7E-18 8E-23 141.3 16.8 210 6-218 292-514 (514)
170 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.4E-22 136.6 18.6 250 12-266 8-337 (434)
171 KOG0650 WD40 repeat nucleolar 99.8 2.1E-17 4.6E-22 140.8 20.3 205 54-260 393-639 (733)
172 KOG1007 WD repeat protein TSSC 99.8 2.9E-17 6.4E-22 129.0 19.3 243 12-258 59-361 (370)
173 KOG4227 WD40 repeat protein [G 99.8 2.1E-17 4.7E-22 134.7 18.9 240 13-257 53-321 (609)
174 KOG0644 Uncharacterized conser 99.8 9.8E-19 2.1E-23 153.8 11.9 243 12-262 186-472 (1113)
175 PRK01742 tolB translocation pr 99.8 3.7E-17 8.1E-22 142.9 21.7 219 40-265 183-410 (429)
176 KOG0290 Conserved WD40 repeat- 99.8 2E-16 4.2E-21 124.5 20.8 240 18-259 46-319 (364)
177 KOG1063 RNA polymerase II elon 99.8 3.8E-17 8.3E-22 141.3 17.3 202 12-216 521-763 (764)
178 PRK11028 6-phosphogluconolacto 99.8 1.2E-14 2.5E-19 123.2 31.2 243 15-262 33-310 (330)
179 KOG1517 Guanine nucleotide bin 99.7 1.6E-15 3.5E-20 136.9 22.5 244 16-265 1064-1339(1387)
180 KOG0642 Cell-cycle nuclear pro 99.7 9.1E-17 2E-21 136.1 13.7 213 4-222 332-567 (577)
181 KOG1007 WD repeat protein TSSC 99.7 2.1E-15 4.5E-20 118.7 19.2 197 14-215 121-360 (370)
182 KOG0771 Prolactin regulatory e 99.7 4.6E-16 9.9E-21 127.8 15.4 191 20-215 148-353 (398)
183 PRK11028 6-phosphogluconolacto 99.7 5.3E-14 1.1E-18 119.1 28.7 222 35-259 6-259 (330)
184 PRK01742 tolB translocation pr 99.7 6.6E-15 1.4E-19 128.8 23.2 217 9-237 196-425 (429)
185 KOG1963 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 129.1 24.4 256 1-263 1-380 (792)
186 KOG1310 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 133.6 12.9 163 53-215 42-230 (758)
187 KOG1445 Tumor-specific antigen 99.7 6.1E-16 1.3E-20 133.1 15.6 205 11-217 74-294 (1012)
188 KOG1009 Chromatin assembly com 99.7 2.8E-15 6.1E-20 122.7 18.6 252 5-261 54-375 (434)
189 KOG1517 Guanine nucleotide bin 99.7 5.9E-15 1.3E-19 133.3 21.6 244 16-261 1109-1384(1387)
190 KOG1523 Actin-related protein 99.7 9.5E-15 2.1E-19 116.4 20.2 232 12-249 6-269 (361)
191 KOG1963 WD40 repeat protein [G 99.7 2.6E-14 5.7E-19 126.9 24.9 241 14-258 203-487 (792)
192 KOG1445 Tumor-specific antigen 99.7 5.1E-16 1.1E-20 133.5 13.3 198 17-216 628-844 (1012)
193 KOG1240 Protein kinase contain 99.7 1.3E-14 2.8E-19 132.8 21.1 220 46-266 1034-1281(1431)
194 PRK05137 tolB translocation pr 99.7 2.2E-13 4.7E-18 119.6 28.3 218 41-263 182-417 (435)
195 KOG1240 Protein kinase contain 99.7 4.2E-14 9E-19 129.6 24.0 245 13-260 1045-1336(1431)
196 KOG1334 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 126.3 13.8 251 12-265 138-431 (559)
197 PRK02889 tolB translocation pr 99.7 1.6E-13 3.5E-18 120.0 26.1 218 42-263 177-407 (427)
198 KOG2110 Uncharacterized conser 99.7 3E-13 6.4E-18 109.8 25.0 231 17-259 6-249 (391)
199 KOG1354 Serine/threonine prote 99.7 4.1E-14 8.9E-19 113.9 19.9 246 14-264 23-365 (433)
200 KOG3881 Uncharacterized conser 99.6 9E-14 2E-18 113.5 20.4 246 15-264 54-326 (412)
201 KOG1272 WD40-repeat-containing 99.6 1.8E-15 3.9E-20 125.8 10.6 225 21-256 134-360 (545)
202 KOG1524 WD40 repeat-containing 99.6 1.4E-14 2.9E-19 122.6 15.9 175 12-206 100-275 (737)
203 PRK04922 tolB translocation pr 99.6 2E-13 4.3E-18 119.7 24.1 204 7-217 194-412 (433)
204 PRK05137 tolB translocation pr 99.6 4.2E-13 9.1E-18 117.8 25.3 204 8-218 193-414 (435)
205 PF02239 Cytochrom_D1: Cytochr 99.6 3.1E-12 6.8E-17 109.2 29.3 252 10-266 30-355 (369)
206 PRK04922 tolB translocation pr 99.6 3.7E-13 8E-18 118.0 24.2 216 41-261 184-414 (433)
207 PRK03629 tolB translocation pr 99.6 5.5E-13 1.2E-17 116.6 25.2 202 9-217 191-407 (429)
208 KOG3881 Uncharacterized conser 99.6 1.3E-13 2.8E-18 112.5 19.5 216 13-235 102-339 (412)
209 KOG0771 Prolactin regulatory e 99.6 3.5E-14 7.6E-19 116.8 16.1 192 65-258 148-354 (398)
210 KOG0649 WD40 repeat protein [G 99.6 8.9E-13 1.9E-17 101.7 21.9 229 12-255 58-313 (325)
211 PF08662 eIF2A: Eukaryotic tra 99.6 2.5E-13 5.4E-18 105.9 19.4 153 108-265 11-185 (194)
212 KOG1524 WD40 repeat-containing 99.6 4.8E-14 1E-18 119.4 16.2 207 31-254 75-282 (737)
213 PRK03629 tolB translocation pr 99.6 2.3E-12 4.9E-17 112.8 27.4 212 42-258 180-406 (429)
214 KOG0322 G-protein beta subunit 99.6 4.5E-14 9.7E-19 109.9 13.9 242 9-257 7-322 (323)
215 KOG2111 Uncharacterized conser 99.6 9.6E-12 2.1E-16 99.4 26.5 171 42-217 76-257 (346)
216 PRK02889 tolB translocation pr 99.6 1.9E-12 4E-17 113.3 24.8 202 9-215 188-402 (427)
217 KOG1587 Cytoplasmic dynein int 99.6 4.8E-13 1E-17 117.9 21.0 220 41-261 222-475 (555)
218 KOG2110 Uncharacterized conser 99.6 1.1E-12 2.5E-17 106.4 20.7 157 16-179 87-251 (391)
219 KOG0644 Uncharacterized conser 99.6 3.1E-15 6.7E-20 132.2 5.9 208 52-266 181-434 (1113)
220 KOG2139 WD40 repeat protein [G 99.6 8.8E-12 1.9E-16 101.2 24.8 244 7-257 131-430 (445)
221 PF02239 Cytochrom_D1: Cytochr 99.5 5.1E-11 1.1E-15 101.8 30.2 189 32-221 6-207 (369)
222 TIGR02800 propeller_TolB tol-p 99.5 1.7E-11 3.8E-16 107.1 26.7 217 42-264 171-402 (417)
223 PF08662 eIF2A: Eukaryotic tra 99.5 7.2E-13 1.6E-17 103.3 15.8 112 14-132 57-179 (194)
224 KOG4497 Uncharacterized conser 99.5 6.4E-12 1.4E-16 100.9 20.5 217 38-258 68-391 (447)
225 KOG1188 WD40 repeat protein [G 99.5 8.1E-13 1.8E-17 106.3 15.4 188 74-262 41-246 (376)
226 KOG1538 Uncharacterized conser 99.5 7.7E-13 1.7E-17 114.9 16.1 194 63-264 14-216 (1081)
227 KOG2321 WD40 repeat protein [G 99.5 9.2E-13 2E-17 112.5 15.3 184 19-206 136-332 (703)
228 KOG4227 WD40 repeat protein [G 99.5 8E-12 1.7E-16 102.5 19.8 249 4-257 91-386 (609)
229 KOG1272 WD40-repeat-containing 99.5 5.5E-14 1.2E-18 117.0 6.3 190 16-214 170-360 (545)
230 KOG2321 WD40 repeat protein [G 99.5 1.8E-11 3.8E-16 104.8 21.4 238 14-256 49-341 (703)
231 KOG0322 G-protein beta subunit 99.5 1E-12 2.2E-17 102.5 11.6 159 15-175 149-322 (323)
232 PRK00178 tolB translocation pr 99.4 2.9E-10 6.2E-15 99.9 27.5 212 43-259 181-407 (430)
233 TIGR02800 propeller_TolB tol-p 99.4 9.4E-11 2E-15 102.4 23.7 201 9-216 182-397 (417)
234 KOG2394 WD40 protein DMR-N9 [G 99.4 5.9E-13 1.3E-17 112.8 8.9 94 15-111 289-383 (636)
235 PRK00178 tolB translocation pr 99.4 2.6E-10 5.6E-15 100.1 25.0 202 8-216 190-406 (430)
236 KOG1334 WD40 repeat protein [G 99.4 3.8E-12 8.3E-17 106.8 12.5 243 13-258 182-466 (559)
237 PRK01029 tolB translocation pr 99.4 6.7E-10 1.4E-14 97.1 26.9 219 15-237 183-424 (428)
238 PF10282 Lactonase: Lactonase, 99.4 7.4E-09 1.6E-13 88.2 31.8 243 19-265 39-331 (345)
239 PRK04792 tolB translocation pr 99.4 3.3E-10 7.1E-15 99.7 24.2 199 11-216 212-425 (448)
240 KOG4497 Uncharacterized conser 99.4 1.3E-11 2.8E-16 99.3 13.5 191 66-259 13-241 (447)
241 KOG1523 Actin-related protein 99.4 3.2E-11 7E-16 96.5 15.5 168 8-179 47-239 (361)
242 KOG0974 WD-repeat protein WDR6 99.4 7.8E-12 1.7E-16 113.3 13.4 145 28-176 142-288 (967)
243 KOG2111 Uncharacterized conser 99.4 1.4E-09 2.9E-14 87.3 24.4 229 19-258 8-256 (346)
244 PRK04792 tolB translocation pr 99.4 1.5E-09 3.3E-14 95.5 27.0 217 42-264 199-430 (448)
245 PLN02919 haloacid dehalogenase 99.4 3.2E-09 6.9E-14 101.9 31.1 237 20-262 571-892 (1057)
246 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.4E-08 3E-13 85.5 30.6 233 29-266 55-338 (352)
247 KOG2139 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 93.6 18.3 188 62-253 99-306 (445)
248 KOG0280 Uncharacterized conser 99.3 1.9E-09 4.2E-14 85.6 22.9 244 18-262 71-337 (339)
249 PRK01029 tolB translocation pr 99.3 2.5E-09 5.5E-14 93.5 25.8 222 42-265 166-410 (428)
250 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.7E-15 104.7 18.5 191 63-258 89-288 (967)
251 KOG2394 WD40 protein DMR-N9 [G 99.3 2.4E-10 5.2E-15 97.3 17.2 183 26-223 180-369 (636)
252 KOG4547 WD40 repeat-containing 99.3 6.2E-10 1.3E-14 95.7 19.1 185 29-217 3-221 (541)
253 KOG4190 Uncharacterized conser 99.3 1.4E-11 3.1E-16 105.2 8.6 201 54-258 728-948 (1034)
254 KOG4190 Uncharacterized conser 99.3 2.2E-11 4.8E-16 104.1 9.7 236 12-256 731-986 (1034)
255 KOG2315 Predicted translation 99.3 2.5E-09 5.5E-14 91.6 21.3 237 18-265 75-396 (566)
256 KOG1064 RAVE (regulator of V-A 99.2 9.3E-11 2E-15 111.6 12.8 191 58-263 2205-2403(2439)
257 COG5170 CDC55 Serine/threonine 99.2 3.7E-10 8.1E-15 90.4 14.2 237 15-256 25-365 (460)
258 KOG1064 RAVE (regulator of V-A 99.2 1E-10 2.2E-15 111.3 12.1 196 15-226 2207-2408(2439)
259 COG2706 3-carboxymuconate cycl 99.2 3.7E-07 8E-12 74.8 29.5 245 14-262 37-327 (346)
260 KOG3914 WD repeat protein WDR4 99.2 7E-10 1.5E-14 91.4 13.4 157 28-186 71-233 (390)
261 KOG0882 Cyclophilin-related pe 99.2 1.5E-09 3.2E-14 90.8 14.5 246 15-267 8-314 (558)
262 KOG4547 WD40 repeat-containing 99.1 1.8E-09 3.9E-14 92.9 14.5 146 29-177 68-221 (541)
263 TIGR03300 assembly_YfgL outer 99.1 1E-07 2.2E-12 82.3 25.4 227 30-266 104-346 (377)
264 KOG0280 Uncharacterized conser 99.1 5.8E-09 1.3E-13 82.9 15.7 153 21-177 126-285 (339)
265 KOG1354 Serine/threonine prote 99.1 2.5E-09 5.5E-14 86.7 12.9 199 15-217 83-360 (433)
266 PF13360 PQQ_2: PQQ-like domai 99.1 7E-08 1.5E-12 77.7 21.3 216 40-263 2-235 (238)
267 TIGR03300 assembly_YfgL outer 99.1 2E-07 4.4E-12 80.5 25.4 223 30-264 64-303 (377)
268 KOG1645 RING-finger-containing 99.1 2.2E-08 4.7E-13 82.9 17.9 243 11-258 188-461 (463)
269 KOG4532 WD40-like repeat conta 99.1 9.1E-08 2E-12 75.4 20.4 206 21-227 72-293 (344)
270 PF10282 Lactonase: Lactonase, 99.1 8E-07 1.7E-11 75.8 28.3 193 20-215 90-321 (345)
271 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.8E-07 1.5E-11 75.4 26.4 218 41-265 27-294 (352)
272 KOG0309 Conserved WD40 repeat- 99.0 7.7E-09 1.7E-13 91.4 14.6 211 1-217 10-233 (1081)
273 PLN02919 haloacid dehalogenase 99.0 3.5E-07 7.6E-12 88.1 27.1 197 19-220 626-892 (1057)
274 KOG3914 WD repeat protein WDR4 99.0 7.3E-09 1.6E-13 85.5 13.3 157 108-266 68-231 (390)
275 KOG1409 Uncharacterized conser 99.0 4.6E-08 9.9E-13 79.5 17.5 196 14-216 66-270 (404)
276 KOG2315 Predicted translation 99.0 1.8E-07 3.8E-12 80.5 21.8 193 15-216 164-390 (566)
277 PF00400 WD40: WD domain, G-be 99.0 1.2E-09 2.6E-14 61.8 5.7 39 51-89 1-39 (39)
278 KOG1832 HIV-1 Vpr-binding prot 99.0 2.8E-10 6E-15 102.2 4.3 199 10-224 1095-1299(1516)
279 KOG1409 Uncharacterized conser 99.0 2E-07 4.4E-12 75.8 19.9 236 13-260 21-272 (404)
280 KOG4714 Nucleoporin [Nuclear s 99.0 8.1E-09 1.8E-13 80.9 11.5 146 31-177 101-255 (319)
281 KOG2695 WD40 repeat protein [G 98.9 4E-09 8.8E-14 85.6 8.2 160 65-228 215-388 (425)
282 PRK04043 tolB translocation pr 98.9 2.7E-06 5.8E-11 74.3 26.1 191 18-217 189-401 (419)
283 KOG2695 WD40 repeat protein [G 98.9 1.2E-08 2.5E-13 83.0 8.6 151 30-187 224-387 (425)
284 KOG2066 Vacuolar assembly/sort 98.8 2.9E-07 6.3E-12 82.4 16.9 182 16-216 39-233 (846)
285 KOG0309 Conserved WD40 repeat- 98.8 2.3E-08 5E-13 88.6 10.0 207 8-216 106-339 (1081)
286 PF08450 SGL: SMP-30/Gluconola 98.8 3.2E-05 6.9E-10 62.7 29.4 216 21-247 4-245 (246)
287 PRK04043 tolB translocation pr 98.8 8.4E-06 1.8E-10 71.2 25.2 191 63-259 189-401 (419)
288 KOG0882 Cyclophilin-related pe 98.8 1.6E-07 3.5E-12 78.9 12.6 204 60-266 8-239 (558)
289 COG4946 Uncharacterized protei 98.8 2.6E-06 5.6E-11 72.4 19.7 168 30-202 331-503 (668)
290 KOG1912 WD40 repeat protein [G 98.8 2.6E-06 5.6E-11 76.3 20.5 235 18-259 17-305 (1062)
291 COG2706 3-carboxymuconate cycl 98.8 3.2E-05 7E-10 63.7 25.4 217 40-258 15-274 (346)
292 PF07433 DUF1513: Protein of u 98.8 6.6E-06 1.4E-10 67.4 21.2 182 21-210 55-279 (305)
293 PF15492 Nbas_N: Neuroblastoma 98.7 2.4E-05 5.1E-10 62.6 22.9 221 28-259 6-260 (282)
294 PF04762 IKI3: IKI3 family; I 98.7 8.5E-06 1.8E-10 77.5 24.0 233 16-257 75-378 (928)
295 KOG2114 Vacuolar assembly/sort 98.7 8.4E-06 1.8E-10 73.9 22.1 195 29-225 33-252 (933)
296 PF13360 PQQ_2: PQQ-like domai 98.7 4E-06 8.6E-11 67.4 18.8 187 30-222 35-236 (238)
297 KOG2041 WD40 repeat protein [G 98.7 6.2E-07 1.3E-11 79.6 14.6 227 16-249 14-279 (1189)
298 PF00400 WD40: WD domain, G-be 98.7 6.1E-08 1.3E-12 54.7 5.8 36 9-47 4-39 (39)
299 KOG4532 WD40-like repeat conta 98.7 6E-06 1.3E-10 65.4 17.9 149 33-184 130-290 (344)
300 KOG1645 RING-finger-containing 98.7 2E-06 4.3E-11 71.5 15.7 219 46-266 178-427 (463)
301 PRK11138 outer membrane biogen 98.6 4E-05 8.8E-10 66.6 24.2 226 31-265 120-360 (394)
302 PF06977 SdiA-regulated: SdiA- 98.6 0.00012 2.6E-09 59.0 24.8 199 9-212 14-246 (248)
303 COG5354 Uncharacterized protei 98.6 4.7E-05 1E-09 65.3 22.6 234 18-260 73-350 (561)
304 KOG2041 WD40 repeat protein [G 98.6 3.9E-06 8.4E-11 74.7 16.6 190 12-204 67-275 (1189)
305 PRK11138 outer membrane biogen 98.6 3.3E-05 7E-10 67.2 22.3 222 31-263 69-317 (394)
306 PF04762 IKI3: IKI3 family; I 98.6 5.9E-05 1.3E-09 71.9 24.8 227 15-258 208-456 (928)
307 PF07433 DUF1513: Protein of u 98.5 0.00031 6.8E-09 57.7 27.1 222 21-250 9-278 (305)
308 PF08450 SGL: SMP-30/Gluconola 98.5 0.00027 5.9E-09 57.2 24.1 193 66-266 4-220 (246)
309 KOG2314 Translation initiation 98.5 3.8E-05 8.2E-10 66.6 18.3 113 104-216 447-573 (698)
310 KOG1920 IkappaB kinase complex 98.5 0.00021 4.6E-09 67.4 24.4 199 16-220 68-326 (1265)
311 PF11768 DUF3312: Protein of u 98.4 2.9E-05 6.3E-10 67.9 17.7 112 19-134 208-331 (545)
312 KOG1832 HIV-1 Vpr-binding prot 98.4 1.7E-07 3.6E-12 84.9 3.9 195 54-263 1094-1296(1516)
313 COG5354 Uncharacterized protei 98.4 0.00011 2.3E-09 63.2 20.4 195 17-217 174-396 (561)
314 COG5170 CDC55 Serine/threonine 98.4 2.1E-06 4.5E-11 69.3 9.7 167 16-186 85-320 (460)
315 PF15492 Nbas_N: Neuroblastoma 98.4 0.00047 1E-08 55.4 22.6 192 20-226 47-269 (282)
316 KOG1275 PAB-dependent poly(A) 98.4 6.5E-06 1.4E-10 75.0 13.7 143 30-175 186-341 (1118)
317 KOG2314 Translation initiation 98.4 0.00013 2.9E-09 63.4 20.5 228 21-258 215-478 (698)
318 COG4946 Uncharacterized protei 98.4 0.00015 3.3E-09 62.0 20.4 151 110-267 327-486 (668)
319 cd00216 PQQ_DH Dehydrogenases 98.4 0.00028 6.1E-09 63.1 22.4 228 32-265 111-431 (488)
320 KOG3621 WD40 repeat-containing 98.3 5.1E-05 1.1E-09 67.6 16.9 192 29-225 43-254 (726)
321 KOG4714 Nucleoporin [Nuclear s 98.3 4.6E-06 1E-10 65.7 9.3 230 19-256 39-316 (319)
322 PF00780 CNH: CNH domain; Int 98.3 0.0011 2.5E-08 54.5 27.0 222 30-266 6-263 (275)
323 PRK02888 nitrous-oxide reducta 98.2 0.00017 3.8E-09 64.6 18.3 180 69-259 200-405 (635)
324 KOG2066 Vacuolar assembly/sort 98.2 9.8E-05 2.1E-09 66.7 16.5 160 10-177 52-234 (846)
325 KOG1912 WD40 repeat protein [G 98.2 0.00016 3.4E-09 65.3 16.6 206 11-217 50-305 (1062)
326 PRK02888 nitrous-oxide reducta 98.2 0.00091 2E-08 60.1 21.4 122 83-206 296-450 (635)
327 COG0823 TolB Periplasmic compo 98.1 0.00039 8.4E-09 60.7 17.9 172 51-225 182-367 (425)
328 PF06433 Me-amine-dh_H: Methyl 98.1 0.0021 4.5E-08 53.7 20.9 235 29-266 45-328 (342)
329 PF11768 DUF3312: Protein of u 98.1 0.00021 4.6E-09 62.6 15.4 111 65-179 209-332 (545)
330 KOG1008 Uncharacterized conser 98.1 9E-07 2E-11 77.6 0.9 193 64-258 59-275 (783)
331 KOG1275 PAB-dependent poly(A) 98.1 0.00023 5E-09 65.3 15.8 179 31-215 147-341 (1118)
332 PF08553 VID27: VID27 cytoplas 98.1 0.0011 2.3E-08 61.7 19.9 141 31-175 493-646 (794)
333 COG0823 TolB Periplasmic compo 98.0 0.00036 7.8E-09 60.9 15.7 191 6-205 182-387 (425)
334 smart00320 WD40 WD40 repeats. 98.0 2.7E-05 5.9E-10 42.3 5.4 39 51-89 2-40 (40)
335 KOG1008 Uncharacterized conser 97.9 2.5E-06 5.4E-11 74.9 0.9 162 12-176 98-275 (783)
336 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0022 4.7E-08 44.5 14.5 102 19-126 2-108 (111)
337 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.015 3.2E-07 49.9 22.8 236 29-266 2-323 (353)
338 KOG1920 IkappaB kinase complex 97.8 0.0083 1.8E-07 57.2 20.5 197 62-260 69-324 (1265)
339 PF04053 Coatomer_WDAD: Coatom 97.8 0.0074 1.6E-07 53.1 19.3 145 56-215 27-172 (443)
340 KOG2114 Vacuolar assembly/sort 97.7 0.011 2.3E-07 54.5 20.1 187 68-258 30-243 (933)
341 PF04053 Coatomer_WDAD: Coatom 97.7 0.022 4.8E-07 50.1 21.2 220 14-257 30-261 (443)
342 PF14583 Pectate_lyase22: Olig 97.7 0.027 5.9E-07 48.0 22.6 238 21-263 35-333 (386)
343 PF02897 Peptidase_S9_N: Proly 97.7 0.035 7.6E-07 48.6 28.3 240 21-263 125-409 (414)
344 PF08553 VID27: VID27 cytoplas 97.6 0.0037 8E-08 58.2 15.7 137 76-215 497-646 (794)
345 cd00216 PQQ_DH Dehydrogenases 97.6 0.057 1.2E-06 48.5 23.0 193 32-226 62-329 (488)
346 PHA02713 hypothetical protein; 97.5 0.0081 1.8E-07 54.7 16.6 214 42-262 273-537 (557)
347 COG3490 Uncharacterized protei 97.5 0.023 5E-07 46.1 16.9 186 23-213 120-345 (366)
348 KOG4441 Proteins containing BT 97.5 0.017 3.7E-07 52.7 18.5 228 30-262 284-550 (571)
349 KOG4640 Anaphase-promoting com 97.5 0.00074 1.6E-08 59.8 9.2 91 63-154 22-114 (665)
350 KOG3617 WD40 and TPR repeat-co 97.5 0.0014 3E-08 60.2 10.6 187 68-266 22-227 (1416)
351 PF08596 Lgl_C: Lethal giant l 97.5 0.064 1.4E-06 46.6 23.1 233 18-256 3-336 (395)
352 COG3391 Uncharacterized conser 97.4 0.064 1.4E-06 46.5 26.9 197 66-265 78-290 (381)
353 PF03178 CPSF_A: CPSF A subuni 97.4 0.045 9.9E-07 46.2 19.1 189 16-211 23-260 (321)
354 PF00780 CNH: CNH domain; Int 97.4 0.025 5.4E-07 46.5 17.1 144 113-265 6-172 (275)
355 KOG3621 WD40 repeat-containing 97.4 0.0061 1.3E-07 54.8 13.6 117 60-177 32-155 (726)
356 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.049 1.1E-06 43.7 24.9 232 13-255 29-297 (354)
357 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.025 5.4E-07 39.3 14.5 95 155-253 12-109 (111)
358 smart00320 WD40 WD40 repeats. 97.3 0.00075 1.6E-08 36.2 4.9 34 11-47 7-40 (40)
359 PF04841 Vps16_N: Vps16, N-ter 97.3 0.1 2.2E-06 45.7 25.7 185 42-236 62-268 (410)
360 PF02897 Peptidase_S9_N: Proly 97.2 0.13 2.7E-06 45.1 22.8 194 64-258 126-357 (414)
361 KOG2395 Protein involved in va 97.2 0.011 2.4E-07 51.7 12.7 136 36-176 351-500 (644)
362 KOG4640 Anaphase-promoting com 97.2 0.0028 6E-08 56.3 9.1 91 18-112 22-115 (665)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.18 3.8E-06 45.8 25.7 232 32-265 121-497 (527)
364 PF08596 Lgl_C: Lethal giant l 97.1 0.16 3.6E-06 44.1 19.7 196 12-212 82-331 (395)
365 PF03178 CPSF_A: CPSF A subuni 97.0 0.16 3.4E-06 42.9 21.1 207 42-254 3-261 (321)
366 COG3204 Uncharacterized protei 97.0 0.14 3E-06 41.9 20.3 189 14-206 83-302 (316)
367 COG3391 Uncharacterized conser 97.0 0.21 4.5E-06 43.4 25.3 217 43-264 13-245 (381)
368 COG3490 Uncharacterized protei 96.9 0.17 3.7E-06 41.3 20.8 237 16-265 34-317 (366)
369 PF15390 DUF4613: Domain of un 96.9 0.24 5.3E-06 44.3 18.0 151 16-177 19-187 (671)
370 PRK13616 lipoprotein LpqB; Pro 96.8 0.31 6.7E-06 44.7 19.4 181 18-208 351-560 (591)
371 PF05096 Glu_cyclase_2: Glutam 96.8 0.2 4.4E-06 40.6 19.7 166 95-266 35-211 (264)
372 PRK13616 lipoprotein LpqB; Pro 96.8 0.41 9E-06 43.9 21.1 171 40-216 328-527 (591)
373 COG3386 Gluconolactonase [Carb 96.8 0.26 5.7E-06 41.3 23.2 212 31-249 37-277 (307)
374 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.22 4.8E-06 40.1 22.1 102 32-135 24-126 (354)
375 PF06433 Me-amine-dh_H: Methyl 96.4 0.47 1E-05 40.0 19.8 195 29-226 104-330 (342)
376 PF12894 Apc4_WD40: Anaphase-p 96.4 0.011 2.4E-07 34.4 4.8 42 220-263 4-45 (47)
377 KOG2444 WD40 repeat protein [G 96.4 0.011 2.4E-07 46.3 6.2 139 78-219 35-180 (238)
378 KOG3617 WD40 and TPR repeat-co 96.4 0.008 1.7E-07 55.4 6.0 106 22-132 21-131 (1416)
379 KOG2395 Protein involved in va 96.3 0.13 2.8E-06 45.3 12.4 137 75-215 348-499 (644)
380 PF12234 Rav1p_C: RAVE protein 96.1 0.35 7.5E-06 44.4 15.0 108 66-176 34-156 (631)
381 PF12234 Rav1p_C: RAVE protein 96.1 0.21 4.6E-06 45.7 13.5 106 108-215 35-155 (631)
382 KOG2444 WD40 repeat protein [G 96.1 0.022 4.8E-07 44.6 6.3 102 31-132 70-177 (238)
383 PF05096 Glu_cyclase_2: Glutam 96.1 0.59 1.3E-05 38.0 14.6 111 150-264 49-163 (264)
384 KOG1897 Damage-specific DNA bi 96.0 1.5 3.2E-05 41.9 23.5 246 16-265 530-822 (1096)
385 COG5167 VID27 Protein involved 96.0 0.24 5.1E-06 43.7 12.7 130 41-176 490-632 (776)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 1.3 2.8E-05 40.3 21.4 186 74-263 70-338 (527)
387 PF05694 SBP56: 56kDa selenium 95.8 1.2 2.7E-05 38.8 16.8 175 29-203 139-389 (461)
388 PHA02713 hypothetical protein; 95.7 0.59 1.3E-05 42.7 14.8 92 30-123 303-408 (557)
389 PHA03098 kelch-like protein; P 95.6 0.86 1.9E-05 41.4 15.6 184 72-262 294-515 (534)
390 PF12894 Apc4_WD40: Anaphase-p 95.6 0.043 9.2E-07 31.9 4.7 31 15-48 10-40 (47)
391 PF00930 DPPIV_N: Dipeptidyl p 95.6 1.3 2.9E-05 37.9 22.3 225 16-245 42-344 (353)
392 KOG2079 Vacuolar assembly/sort 95.6 0.087 1.9E-06 50.1 9.0 95 160-257 101-202 (1206)
393 PF14870 PSII_BNR: Photosynthe 95.4 1.3 2.9E-05 37.0 15.5 148 17-173 145-301 (302)
394 KOG2079 Vacuolar assembly/sort 95.2 0.12 2.6E-06 49.2 8.7 100 72-175 98-202 (1206)
395 TIGR03074 PQQ_membr_DH membran 95.1 3.2 7E-05 39.5 24.8 233 23-265 187-484 (764)
396 PHA02790 Kelch-like protein; P 95.0 1.8 3.9E-05 38.9 15.4 182 72-261 271-473 (480)
397 KOG4441 Proteins containing BT 95.0 3 6.4E-05 38.4 17.4 186 30-218 332-548 (571)
398 PF07569 Hira: TUP1-like enhan 94.6 0.32 6.9E-06 38.7 8.8 60 156-216 21-95 (219)
399 TIGR02276 beta_rpt_yvtn 40-res 94.6 0.23 4.9E-06 27.6 5.9 41 155-195 1-41 (42)
400 PF06977 SdiA-regulated: SdiA- 94.5 2.1 4.5E-05 34.7 23.1 195 56-255 16-247 (248)
401 KOG1983 Tomosyn and related SN 94.3 3.2 7E-05 40.7 16.1 70 190-264 201-270 (993)
402 COG3386 Gluconolactonase [Carb 94.2 2.9 6.3E-05 35.1 19.1 95 169-266 144-250 (307)
403 KOG2377 Uncharacterized conser 94.2 2.3 4.9E-05 37.3 13.1 153 20-178 26-187 (657)
404 PF04841 Vps16_N: Vps16, N-ter 94.0 4.1 8.8E-05 35.8 23.6 172 17-201 81-273 (410)
405 PF10168 Nup88: Nuclear pore c 93.9 0.92 2E-05 42.6 11.2 27 18-47 86-112 (717)
406 PF14870 PSII_BNR: Photosynthe 93.8 3.5 7.6E-05 34.5 21.5 157 53-213 136-301 (302)
407 PF15390 DUF4613: Domain of un 93.8 1.6 3.4E-05 39.4 11.8 124 6-131 47-185 (671)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 93.6 0.79 1.7E-05 40.0 9.7 78 189-266 309-406 (415)
409 PF10313 DUF2415: Uncharacteri 93.5 0.51 1.1E-05 26.7 5.5 32 146-177 1-34 (43)
410 KOG1897 Damage-specific DNA bi 93.3 8 0.00017 37.2 22.4 229 29-264 593-862 (1096)
411 PHA02790 Kelch-like protein; P 93.3 5.9 0.00013 35.6 15.9 104 30-133 271-385 (480)
412 TIGR02604 Piru_Ver_Nterm putat 93.1 5.4 0.00012 34.4 14.4 140 64-206 16-202 (367)
413 PF07569 Hira: TUP1-like enhan 93.0 1.4 3E-05 35.0 9.7 59 30-89 21-93 (219)
414 PHA03098 kelch-like protein; P 93.0 6.9 0.00015 35.6 16.9 104 30-134 294-416 (534)
415 PF14781 BBS2_N: Ciliary BBSom 93.0 2.5 5.5E-05 30.5 12.6 105 157-263 10-129 (136)
416 COG3204 Uncharacterized protei 92.8 3.4 7.5E-05 34.1 11.5 112 145-258 85-210 (316)
417 KOG4499 Ca2+-binding protein R 92.6 4.6 9.9E-05 32.3 20.3 210 33-248 29-275 (310)
418 PF14761 HPS3_N: Hermansky-Pud 92.4 4.4 9.6E-05 31.9 14.9 132 80-215 35-213 (215)
419 KOG4499 Ca2+-binding protein R 92.3 4.9 0.00011 32.2 16.4 177 19-198 59-264 (310)
420 PRK10115 protease 2; Provision 92.2 10 0.00023 35.8 27.5 228 28-261 135-397 (686)
421 KOG1916 Nuclear protein, conta 92.2 0.17 3.7E-06 47.5 3.8 73 18-91 182-265 (1283)
422 PF03088 Str_synth: Strictosid 92.1 0.7 1.5E-05 30.9 5.8 41 166-206 35-75 (89)
423 PF11715 Nup160: Nucleoporin N 91.9 1.1 2.4E-05 40.9 8.8 38 62-99 215-256 (547)
424 TIGR03118 PEPCTERM_chp_1 conse 91.9 6.7 0.00014 32.7 22.3 200 65-265 26-286 (336)
425 COG3823 Glutamine cyclotransfe 91.8 5.2 0.00011 31.4 14.1 177 21-205 50-247 (262)
426 PF07250 Glyoxal_oxid_N: Glyox 91.7 6.2 0.00013 31.9 11.9 138 86-224 49-205 (243)
427 PF10647 Gmad1: Lipoprotein Lp 90.5 8.4 0.00018 31.3 17.2 141 63-205 25-183 (253)
428 COG5167 VID27 Protein involved 90.4 7.9 0.00017 34.6 11.9 141 71-216 477-632 (776)
429 smart00036 CNH Domain found in 90.0 10 0.00022 31.7 24.4 231 26-266 8-278 (302)
430 PF10313 DUF2415: Uncharacteri 89.5 2.3 5E-05 24.1 5.4 31 62-92 1-34 (43)
431 TIGR03074 PQQ_membr_DH membran 89.3 21 0.00046 34.2 16.8 67 159-226 262-354 (764)
432 PF08728 CRT10: CRT10; InterP 88.9 9 0.00019 36.0 11.8 104 72-175 113-245 (717)
433 COG3823 Glutamine cyclotransfe 88.9 8.8 0.00019 30.2 9.9 143 114-265 56-211 (262)
434 PF07250 Glyoxal_oxid_N: Glyox 88.5 8 0.00017 31.3 10.0 112 152-265 73-204 (243)
435 PF14583 Pectate_lyase22: Olig 88.4 16 0.00034 31.7 24.4 227 30-258 91-381 (386)
436 smart00564 PQQ beta-propeller 88.2 1.2 2.6E-05 23.1 3.7 26 240-265 6-31 (33)
437 COG1520 FOG: WD40-like repeat 87.7 17 0.00037 31.3 15.6 106 157-264 111-223 (370)
438 PF10647 Gmad1: Lipoprotein Lp 87.7 14 0.0003 30.1 21.9 150 18-172 25-192 (253)
439 PF05694 SBP56: 56kDa selenium 87.2 20 0.00044 31.6 19.8 188 30-217 86-343 (461)
440 PF11715 Nup160: Nucleoporin N 86.9 4.3 9.3E-05 37.1 8.7 28 157-184 229-256 (547)
441 TIGR02276 beta_rpt_yvtn 40-res 86.6 3.7 8.1E-05 22.5 6.3 38 197-234 1-40 (42)
442 PLN00033 photosystem II stabil 86.5 22 0.00047 31.2 17.6 144 65-213 242-396 (398)
443 PF07995 GSDH: Glucose / Sorbo 85.7 21 0.00046 30.3 14.3 100 19-123 4-134 (331)
444 COG4590 ABC-type uncharacteriz 85.0 7.3 0.00016 34.3 8.4 164 53-219 212-389 (733)
445 TIGR02604 Piru_Ver_Nterm putat 84.9 25 0.00053 30.4 16.5 139 105-248 16-203 (367)
446 PF14655 RAB3GAP2_N: Rab3 GTPa 84.9 19 0.00042 31.6 11.1 52 17-69 57-116 (415)
447 KOG4460 Nuclear pore complex, 84.8 11 0.00025 33.8 9.5 86 29-135 113-201 (741)
448 PF10395 Utp8: Utp8 family; I 84.4 36 0.00077 31.9 20.0 160 61-225 129-314 (670)
449 PF14781 BBS2_N: Ciliary BBSom 84.3 13 0.00029 26.9 14.3 107 108-216 4-125 (136)
450 KOG3630 Nuclear pore complex, 84.1 9.2 0.0002 37.5 9.3 132 33-164 116-262 (1405)
451 PF14761 HPS3_N: Hermansky-Pud 83.8 20 0.00042 28.4 13.8 106 110-217 25-164 (215)
452 PF08728 CRT10: CRT10; InterP 83.5 22 0.00049 33.5 11.4 101 157-257 113-245 (717)
453 PRK13684 Ycf48-like protein; P 82.9 29 0.00062 29.6 20.5 147 61-214 172-329 (334)
454 PRK10115 protease 2; Provision 82.5 45 0.00098 31.6 22.6 111 63-175 128-254 (686)
455 PF01011 PQQ: PQQ enzyme repea 82.3 3.1 6.6E-05 22.7 3.6 23 243-265 3-25 (38)
456 TIGR03548 mutarot_permut cycli 81.2 32 0.00069 28.9 14.2 82 168-249 139-233 (323)
457 PRK13684 Ycf48-like protein; P 80.6 35 0.00076 29.0 24.2 148 103-256 173-329 (334)
458 PF14727 PHTB1_N: PTHB1 N-term 79.9 42 0.00092 29.6 17.0 144 111-256 34-202 (418)
459 KOG2280 Vacuolar assembly/sort 78.5 61 0.0013 30.7 13.7 174 18-199 85-271 (829)
460 TIGR03547 muta_rot_YjhT mutatr 77.8 43 0.00093 28.4 19.5 41 209-249 291-331 (346)
461 KOG1900 Nuclear pore complex, 77.7 43 0.00092 33.7 11.5 134 121-259 96-273 (1311)
462 COG4590 ABC-type uncharacteriz 76.4 42 0.00091 29.8 10.1 104 30-134 279-388 (733)
463 PF12657 TFIIIC_delta: Transcr 76.3 31 0.00068 26.1 9.2 32 146-177 86-122 (173)
464 PF05935 Arylsulfotrans: Aryls 76.2 59 0.0013 29.3 16.9 154 29-186 113-311 (477)
465 COG1520 FOG: WD40-like repeat 75.6 52 0.0011 28.3 21.4 189 30-227 68-279 (370)
466 KOG1900 Nuclear pore complex, 75.5 63 0.0014 32.6 11.9 137 37-177 95-273 (1311)
467 PLN00033 photosystem II stabil 75.2 57 0.0012 28.6 15.4 106 61-173 280-396 (398)
468 PRK14131 N-acetylneuraminic ac 74.5 56 0.0012 28.2 20.3 23 239-261 343-371 (376)
469 KOG3630 Nuclear pore complex, 74.4 34 0.00074 33.9 9.8 110 104-213 102-225 (1405)
470 PF10168 Nup88: Nuclear pore c 74.1 83 0.0018 30.0 16.8 73 104-178 86-181 (717)
471 KOG1916 Nuclear protein, conta 73.4 7.2 0.00016 37.3 5.1 113 14-131 130-264 (1283)
472 KOG2247 WD40 repeat-containing 71.1 0.43 9.3E-06 41.9 -2.9 135 68-206 41-178 (615)
473 KOG3616 Selective LIM binding 70.7 81 0.0018 30.1 10.9 33 63-95 16-48 (1636)
474 KOG4460 Nuclear pore complex, 69.9 84 0.0018 28.6 10.5 94 64-181 106-203 (741)
475 KOG3616 Selective LIM binding 69.4 18 0.00038 34.2 6.6 35 98-132 10-44 (1636)
476 PF03022 MRJP: Major royal jel 69.2 66 0.0014 26.8 11.6 77 190-266 3-104 (287)
477 PF02333 Phytase: Phytase; In 68.6 80 0.0017 27.5 19.3 193 71-265 66-298 (381)
478 PF07995 GSDH: Glucose / Sorbo 67.0 47 0.001 28.2 8.5 81 6-86 242-330 (331)
479 PF13570 PQQ_3: PQQ-like domai 65.7 20 0.00043 19.5 4.9 20 240-259 21-40 (40)
480 PF10214 Rrn6: RNA polymerase 64.7 1.4E+02 0.003 28.8 26.0 154 59-217 77-277 (765)
481 PF01731 Arylesterase: Arylest 63.9 40 0.00087 22.4 6.6 47 168-216 36-84 (86)
482 PF07676 PD40: WD40-like Beta 63.1 22 0.00047 19.0 5.5 30 144-173 7-38 (39)
483 PF03088 Str_synth: Strictosid 62.6 34 0.00074 22.9 5.4 42 79-120 33-74 (89)
484 PF10395 Utp8: Utp8 family; I 61.8 1.4E+02 0.0031 28.1 20.9 156 101-258 128-305 (670)
485 PLN02153 epithiospecifier prot 59.5 1.1E+02 0.0024 25.9 17.6 54 208-261 217-287 (341)
486 PF01436 NHL: NHL repeat; Int 58.5 22 0.00049 17.7 3.9 23 65-87 5-27 (28)
487 KOG2109 WD40 repeat protein [G 57.7 15 0.00033 33.9 4.0 82 44-125 298-391 (788)
488 PF14269 Arylsulfotran_2: Aryl 57.6 89 0.0019 26.2 8.4 67 190-257 146-219 (299)
489 PLN02193 nitrile-specifier pro 56.0 1.5E+02 0.0033 26.5 18.2 54 208-261 343-413 (470)
490 PF14779 BBS1: Ciliary BBSome 55.8 72 0.0016 26.1 7.2 68 145-212 176-254 (257)
491 KOG2247 WD40 repeat-containing 54.7 1.4 3E-05 38.9 -2.8 109 150-262 39-151 (615)
492 TIGR03118 PEPCTERM_chp_1 conse 54.6 1.3E+02 0.0029 25.4 25.7 200 19-222 25-285 (336)
493 KOG2280 Vacuolar assembly/sort 53.6 2.1E+02 0.0045 27.4 17.5 182 39-225 62-255 (829)
494 PF14779 BBS1: Ciliary BBSome 52.1 84 0.0018 25.7 7.0 56 200-255 197-255 (257)
495 KOG2063 Vacuolar assembly/sort 52.0 2.4E+02 0.0053 27.7 14.8 65 30-95 25-100 (877)
496 PRK14131 N-acetylneuraminic ac 51.3 1.6E+02 0.0035 25.4 15.0 12 168-179 189-200 (376)
497 KOG3522 Predicted guanine nucl 50.4 1.2E+02 0.0026 29.2 8.5 139 76-224 550-705 (925)
498 COG5276 Uncharacterized conser 49.5 1.6E+02 0.0035 24.8 24.5 147 62-216 87-241 (370)
499 PF12657 TFIIIC_delta: Transcr 49.3 49 0.0011 25.1 5.2 33 17-49 86-121 (173)
500 KOG2103 Uncharacterized conser 47.2 2E+02 0.0044 27.7 9.3 78 147-229 37-116 (910)
No 1
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=302.20 Aligned_cols=261 Identities=67% Similarity=1.118 Sum_probs=248.4
Q ss_pred ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (268)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~ 83 (268)
.+..-|++|+||+.||..++|+|++|+|..|++++.|+.-.+.+.++|.++.+|.||++.|+.++...+-...||++.|-
T Consensus 2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 84 ~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (268)
+.++||..++..++.++|++.|+.++|+.|.+.|++|+.++.+|+||++.++.++.++.+|.+.|..+.|++.+..++++
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999988776655
Q ss_pred eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372 164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (268)
++|++||+||.|++..++.++...+|.++.++++|+++..+.++.|.+||..++++++.|..|+++.+..+.|+ ...|
T Consensus 162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~-k~~f 239 (334)
T KOG0278|consen 162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK-KEFF 239 (334)
T ss_pred -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC-CceE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999985 6999
Q ss_pred EeccCCCeEEEEECCCCcEEeec
Q 024372 244 IAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
++|++|+.++.||..||+++..+
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred EecCcceEEEEEeccCCceeeec
Confidence 99999999999999999998764
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-43 Score=283.82 Aligned_cols=247 Identities=21% Similarity=0.295 Sum_probs=217.4
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcEEEEeCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v~iw~~~ 91 (268)
|-+.||..+.|++ |+..|||||.+|.+++|+..+...+.+|.||++.|.++.|+|. +..+|||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 7789999999985 8999999999999999999999999999999999999999997 4578999999999999998
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
+..++..+. |...|..++|+|+|++|+|+++|.+-++||+++....... .+|...|.+++|.++| .++++|+-|..=
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DG-SL~~tGGlD~~~ 327 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDG-SLAATGGLDSLG 327 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCC-ceeeccCccchh
Confidence 877777775 7888999999999999999999999999999876544443 3566789999998766 577788888999
Q ss_pred EEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eeeEEcCCCCCEEEecc
Q 024372 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG 247 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs 247 (268)
||||+|+|+++-.+..| .+|.+++|+|+|-.+++ ++|+++++||++...++.++..+.+. ..+.+.|..|.+|+|+|
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999865 56999999999988876 46899999999998888777776664 45677777899999999
Q ss_pred CCCeEEEEECCCCcEEee
Q 024372 248 EDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 248 ~d~~i~~wd~~~g~~~~~ 265 (268)
.|+++++|...+.+++..
T Consensus 408 yD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred cCcceeeecCCCcccchh
Confidence 999999999988887765
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=279.45 Aligned_cols=245 Identities=26% Similarity=0.395 Sum_probs=207.0
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+.||.++|.++.|+| +|.+|++|+.|.++|+||..+.....+.++|+..|.+++|+||+..||||+.||+|++||..
T Consensus 111 ~~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cCCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 469999999999996 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeee-e-ccCCeEEEEEECC-----CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 92 TGDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 92 ~~~~~~~-~-~~~~~v~~v~~~~-----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
++++.-. + .|+..|.+++|.| ..+.|++++.||.+++||+..+. .......|..+|+|+.|- ++.++.++
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwG--G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWG--GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEc--CCceEEec
Confidence 8886543 3 4889999999976 46799999999999999987543 345567889999999984 34578888
Q ss_pred eCCCeEEEEeCCCCceEEeecCC---------------------------------------------------------
Q 024372 165 TDSGGVRLWDARSGKIVQTLETK--------------------------------------------------------- 187 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------------- 187 (268)
+.|++||+|+...|.+.+++.+|
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999987655433222211
Q ss_pred -----------------------CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCE
Q 024372 188 -----------------------SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI 242 (268)
Q Consensus 188 -----------------------~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (268)
.-|+.+.||||+++++++ -|..|++||.++++-+.+|..+.. +..++++. +.++
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccE
Confidence 247889999999999875 599999999999988888886554 45666666 6899
Q ss_pred EEeccCCCeEEEEECCCCcEE
Q 024372 243 FIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 243 ~~~gs~d~~i~~wd~~~g~~~ 263 (268)
+++||.|.++++||+++.++.
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred EEEcCCCceEEEEEeeeeeec
Confidence 999999999999999876653
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-43 Score=284.60 Aligned_cols=248 Identities=22% Similarity=0.302 Sum_probs=218.5
Q ss_pred eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
.++....|.||++.|.++.|+|.. ++..||||+.||++++|+.++-+.+..|.+|...|..++|+|+|++|+|++.|.+
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred CcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence 345566778999999999999964 4678999999999999999988999999999999999999999999999999999
Q ss_pred EEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372 85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 85 v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (268)
.|+||+.++...... .|...|.+++|+|||.+++||+.|..-++||++++... ..+..|..+|..++|+|+|. .+++
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy-~lAT 362 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGY-HLAT 362 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCce-EEee
Confidence 999999998876555 48899999999999999999999999999999988654 34445888999999999775 5667
Q ss_pred eeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECC-CCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCC
Q 024372 164 CTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL 239 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~-~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (268)
|+.|++++|||+|..++++++..|. -|..+.|+| .|.||++ +.|.++++|..+++.+++....+.. +.++++.+ +
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d 441 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-D 441 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-C
Confidence 7888999999999999999998665 489999999 5777765 5799999999999999999988765 56777777 6
Q ss_pred CCEEEeccCCCeEEEEE
Q 024372 240 GNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 240 ~~~~~~gs~d~~i~~wd 256 (268)
+++++++|.|+++++|.
T Consensus 442 ~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CceEEEeccCceeeecc
Confidence 99999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-41 Score=260.99 Aligned_cols=251 Identities=27% Similarity=0.383 Sum_probs=213.6
Q ss_pred CcceeeecEE-eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372 2 DKRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (268)
Q Consensus 2 ~~~~~~~~~~-~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s 80 (268)
|+.++.+|+- +.||++.|..+..+ +||++.+++|.|+++++||..+|+..+.|.||...|.+++|++|++.++|||
T Consensus 48 dd~~~G~~~r~~~GHsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS 124 (315)
T KOG0279|consen 48 DDIKYGVPVRRLTGHSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS 124 (315)
T ss_pred CccccCceeeeeeccceEecceEEc---cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence 4456666554 46999999999998 4999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCeeeeecc--CCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372 81 ADFTAKLWDALTGDEKHSFEH--KHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (268)
+|+++++|+..........+. .+-|.|+.|+|+ ..+++++++|+++|+||++.-+. .+.+..|++.++.+.++|+
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCC
Confidence 999999999976554444443 678999999997 78999999999999999986543 3455578899999999987
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC----C-----
Q 024372 157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM----P----- 227 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~----~----- 227 (268)
+ .++++|+.||.+.+||++.+++++.+++...|++++|+|+.-.|..+.+..|+|||++...++..+.. +
T Consensus 204 G-slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 204 G-SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred C-CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence 6 57788899999999999999999999999999999999998777777777899999998877766643 1
Q ss_pred C-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 228 C-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 228 ~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
. ...++++++ +|..|.+|-.|+.|++|.+.
T Consensus 283 ~~~clslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 283 DPICLSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CcEEEEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 1 123555665 79999999999999999874
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-40 Score=256.80 Aligned_cols=251 Identities=21% Similarity=0.297 Sum_probs=213.2
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-----CCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
.+.+|++.|.+++-.+. +-+.|+++++|+++.+|++. .|..++.|.||+..|..+..++|+.+++|+|+|+++
T Consensus 10 tl~gh~d~Vt~la~~~~--~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIK--NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecC--CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 45699999999999875 34689999999999999654 466789999999999999999999999999999999
Q ss_pred EEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC-CcccEEEEEEeCCC-CcEEE
Q 024372 86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSD-QTILS 162 (268)
Q Consensus 86 ~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~ 162 (268)
|+||+.+++..+.| .|..-|.+++|++|...+++|+.|++|++|+.-. ......... +.+.|+|+.|+|.. ..+++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999887766 5999999999999999999999999999999743 333333332 37899999999974 44677
Q ss_pred EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCC
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (268)
+++.|++||+||+++.+..+.+..+ ..++.+++||||.+.+++ .|+.+.+||++..+.+..+.....+.+++|.| .
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--n 244 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--N 244 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--C
Confidence 7788899999999999988877654 559999999999998875 58999999999999988888877888888887 5
Q ss_pred CEEEeccCCCeEEEEECCCCcEEeec
Q 024372 241 NIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
++.+++..+..|++||..++..+..+
T Consensus 245 rywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 245 RYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred ceeEeeccCCceEEEeccchhhhhhc
Confidence 66666666666999999988887664
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=239.43 Aligned_cols=252 Identities=23% Similarity=0.362 Sum_probs=219.2
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw 88 (268)
-++|.||.+.|.++.|+ +|.++|+++|.||.+.|||..+...++-+.-....|.+|+|+|.+.++|.|+-|...-||
T Consensus 48 rr~LkGH~~Ki~~~~ws---~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWS---TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEec---CCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 36788999999999998 499999999999999999999988888888888999999999999999999999999999
Q ss_pred eCCCCC------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372 89 DALTGD------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 89 ~~~~~~------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
++.+.+ ..+.+ .|...+.++.|-+|+ .++|++.|.+.-+||++++. ..+.+..|.+.|.++++.|.+.+.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeE
Confidence 998552 22233 488999999998865 57799999999999999864 4577788999999999999778888
Q ss_pred EEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC---CCCceeeEEc
Q 024372 162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM---PCNTESASLE 236 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~ 236 (268)
++|+-|+..+|||+|.+.++++|..| ..|+++.|.|+|.-+++ ++|+++|+||+|....+..|.. ..++.+++|+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 88888899999999999999999865 56999999999977765 5789999999999888888865 3456777777
Q ss_pred CCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
. +|++|.+|..|..+.+||.-.|+.+.++
T Consensus 283 ~-SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 283 K-SGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred c-cccEEEeeecCCceeEeeccccceEEEe
Confidence 6 7999999999999999999888877664
No 8
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=236.17 Aligned_cols=248 Identities=23% Similarity=0.353 Sum_probs=213.0
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
..+..|+++|+++.|+ .||+|+++++.|+++++|++..|.+++++.+|...|..++.+.|+..+++|+.|+.+.+||
T Consensus 11 ~~l~~~qgaV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeecccccceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 3456899999999998 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
+++++..+.+. |...|+.+.|+.+..++++|+.|..+++||-++... +.+.+....+.|.++... ++.+++|+-|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence 99999999885 889999999999999999999999999999876543 345555667788888764 4567788888
Q ss_pred CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCCc-e--eeEEcCCCCCEE
Q 024372 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNT-E--SASLEPKLGNIF 243 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 243 (268)
|++|.||+|.|+...-+.. .+++++.|+++++... ++=|.++|+-|..++++++.|..+.+. . .+++. +....+
T Consensus 165 GtvRtydiR~G~l~sDy~g-~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qsdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG-HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QSDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhcC-CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-ccceeE
Confidence 9999999999987665544 5799999999999865 456899999999999999999875542 2 23333 357789
Q ss_pred EeccCCCeEEEEECCCCcEEee
Q 024372 244 IAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
++||+||.|++||+..+.++.-
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred EeccCCceEEEEEeccceeeee
Confidence 9999999999999987776543
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=249.33 Aligned_cols=244 Identities=23% Similarity=0.344 Sum_probs=214.4
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
-..+.||++.|.+++|+. .|++||++|.|-.+++||..+ .++++.+.+|+..|.+++|-|.|.+++|+++|.+|+.
T Consensus 143 e~~LrGHt~sv~di~~~a---~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDA---SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhhhccccceeEEEEec---CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 345679999999999985 789999999999999999987 6788889999999999999999999999999999999
Q ss_pred EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC---------
Q 024372 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD--------- 157 (268)
Q Consensus 88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 157 (268)
|++.++-++.++. |++.|+.+..+.||.++++++.|.++++|-+++.+.+ .....|+.+|.|++|.|..
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCcchhhcc
Confidence 9999999999885 7888999999999999999999999999998875432 3445677789999986622
Q ss_pred -----CcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc
Q 024372 158 -----QTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT 230 (268)
Q Consensus 158 -----~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~ 230 (268)
..++.+++.|++||+||+.++.|+-++..+ ..|..++|+|.|+||++ ++|+++++||+++..++++...+..+
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 247888899999999999999999999765 56999999999999876 68899999999999999999988877
Q ss_pred eeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 231 ESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 231 ~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
..+..++..-.++++|+-|..+++|.
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeee
Confidence 65555555677999999999999997
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=249.45 Aligned_cols=245 Identities=24% Similarity=0.382 Sum_probs=207.6
Q ss_pred cEEeeecCCCeeeEEEecCC--CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 9 PLVCHGHSRPVVDLFYSPIT--PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~--~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
...|.||...|++|+|.|.. |...+||++|.|++++|||+..+.++..+.||+.+|.++.|..++ +++|||.|++||
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIk 271 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIK 271 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEE
Confidence 44568999999999999844 778899999999999999999999999999999999999998766 679999999999
Q ss_pred EEeCCCCCeeeeec-cCCeEEEEEEC-----------CCC-------------------------CEEEEeeCCCeEEEE
Q 024372 87 LWDALTGDEKHSFE-HKHIVRACAFS-----------EDT-------------------------HLLLTGGFEKILRIF 129 (268)
Q Consensus 87 iw~~~~~~~~~~~~-~~~~v~~v~~~-----------~~~-------------------------~~l~s~~~d~~i~~~ 129 (268)
+|+...+.+.+.+. |.+.|+.++++ |.+ ..+++|+.|.++.+|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 99999988777664 77777776655 323 349999999999999
Q ss_pred ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CC
Q 024372 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DG 207 (268)
Q Consensus 130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~ 207 (268)
+......+......|+..|+.+.|+|++. ++++++.|+.||+||-++|+.+.+|.+| ..|+.++|+.|.++++++ .|
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 97655555566678899999999999876 5566677799999999999999999855 669999999999998765 58
Q ss_pred CeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 208 SSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 208 ~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
.++++||+++.++...+..+. .+..+.+.| +|..+++|+.|+.+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 999999999877766666443 456777777 799999999999999995
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.7e-37 Score=265.77 Aligned_cols=240 Identities=25% Similarity=0.370 Sum_probs=206.9
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-------------------------------CCeEEEeeCcc
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------------------------------GDWIGTFEGHK 61 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-------------------------------~~~~~~~~~h~ 61 (268)
+.-...++++.|++ |+.+||.|-.|..|++|.... ....+++.||+
T Consensus 375 ~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 34556888999984 889999999999999997652 11345688999
Q ss_pred CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE 140 (268)
Q Consensus 62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~ 140 (268)
++|+.++|+|+.++|+|+|.|+++|+|.+.+..+.-.+. |..||..+.|+|.|-++||++.|++.++|..... .+.+.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRI 530 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhh
Confidence 999999999999999999999999999999988776664 8889999999999999999999999999987653 34566
Q ss_pred ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc
Q 024372 141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF 218 (268)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~ 218 (268)
+-+|.+.+.|+.|.|+ .+++++|+.|+++|+||+.+|..++.|.+ +.+|.++++||+|++|+++ +|+.|++||+.++
T Consensus 531 faghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 6678889999998765 56788889999999999999999999975 5779999999999999986 5899999999998
Q ss_pred eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 219 GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+++..+..+.+ ..++.|+. +|..||+||.|..|++||+.
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEch
Confidence 88877765554 45677766 79999999999999999985
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.4e-38 Score=258.07 Aligned_cols=241 Identities=23% Similarity=0.379 Sum_probs=208.9
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
++||+..|+++.|.|. .+.+|++++.|+.|+||++.. ++++++|.||..+|..++|++++..++|+|.|+.+++||+
T Consensus 210 ~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred ccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 3699999999999984 688999999999999999987 8999999999999999999999999999999999999999
Q ss_pred CCCCeeeeeccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 91 LTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 91 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
++|++...+.....+.|+.|+|++ +.+++|+.|+.|+.||+++++ ..++...|-+.+..+.|.+.+..++ ++++|+.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFi-ssSDdks 365 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFI-SSSDDKS 365 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEe-eeccCcc
Confidence 999999999988999999999987 899999999999999999876 4566677889999999999887655 5578899
Q ss_pred EEEEeCCCCceEEee--------------------------------c--------------CC---CCEEEEEECCCCc
Q 024372 170 VRLWDARSGKIVQTL--------------------------------E--------------TK---SPVTSAEVSRDGR 200 (268)
Q Consensus 170 i~iwd~~~~~~~~~~--------------------------------~--------------~~---~~v~~~~~s~~g~ 200 (268)
++||+.+..-.++.. + ++ +-...+.|||||.
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 999998855332111 0 00 1235788999999
Q ss_pred EEEEe-CCCeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 201 YITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 201 ~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
+|.+| ++|.+.+||.++.+++..+..+ ..++...++|...+.+|++|.||.|++||
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99887 4799999999998888888776 45677888888889999999999999996
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.6e-37 Score=265.80 Aligned_cols=212 Identities=27% Similarity=0.483 Sum_probs=188.4
Q ss_pred CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (268)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s 80 (268)
+|+..-..-..+.||++||.++.|+| +.++|+++|.|+++|+|...+..++-.++||..||+.+.|+|.|.|+||+|
T Consensus 436 ~D~~~~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 436 LDDDSSGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred ccccCCceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 35555555566789999999999995 889999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
.|++.++|......+.+.+ .|..-|.|+.|||+..++++||.|+++|+||..++. ..+.+.+|.++|.+++|+|.+ .
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~G-r 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCG-R 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCC-c
Confidence 9999999999888877766 488899999999999999999999999999987664 467888899999999999965 5
Q ss_pred EEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCC
Q 024372 160 ILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANH 217 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~ 217 (268)
.+++|++|+.|+|||+.+++.+.++.. .+.+.++.|+++|..|++ +.|..|++||+..
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 677888899999999999999887764 456999999999999876 4689999999864
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=220.88 Aligned_cols=246 Identities=19% Similarity=0.340 Sum_probs=200.2
Q ss_pred cCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 15 HSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 15 h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
|.+ -|++|+.. ||+.+||+|+. ..||+||++++. .+.+|.+|+..|.++.|..+|+.++|||.||++||||+.
T Consensus 38 h~dsqVNrLeiT---pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 38 HPDSQVNRLEIT---PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred cCccceeeEEEc---CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 443 67888775 58888886654 678999999875 689999999999999999999999999999999999999
Q ss_pred CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (268)
Q Consensus 92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 171 (268)
...+.+.+.+..+|+++..+|+..-|++|..+|.|++||+.......+........+.++...|++.. ++++...|...
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cy 192 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCY 192 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEE
Confidence 98899999999999999999999999999999999999997654333444444567888888887765 55556669999
Q ss_pred EEeCCCCc------eEEeecCCC-CEEEEEECCCCcEEEE-eCCCeEEEEeCCCc-eeeeEEeCCCC-ceeeEEcCCCCC
Q 024372 172 LWDARSGK------IVQTLETKS-PVTSAEVSRDGRYITT-ADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGN 241 (268)
Q Consensus 172 iwd~~~~~------~~~~~~~~~-~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 241 (268)
+|++-... ++.+++.+. -+..+-+|||+++|++ ++|.+++||+.+.+ +.-.....+.. ...++|+. +|+
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~ 271 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGE 271 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-Ccc
Confidence 99986543 344555444 4899999999999975 67999999999987 33334444433 45666666 799
Q ss_pred EEEeccCCCeEEEEECCCCcEEeec
Q 024372 242 IFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+|++||.|..+++|++.+|+++..+
T Consensus 272 YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EEEecCCCCceeecccccCceeeec
Confidence 9999999999999999999998875
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-35 Score=255.24 Aligned_cols=246 Identities=28% Similarity=0.411 Sum_probs=206.7
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC-C
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-L 91 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~-~ 91 (268)
|...|.++.|+| +|++|++++.|+.+++|+...++ +.+++.+|...|..++|+|++.++++++.|+++|+||+ .
T Consensus 158 ~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 478899999985 89999999999999999998888 78888999999999999999999999999999999999 4
Q ss_pred CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+...+++ .|...|++++|+|+++++++|+.|++|++||+++++ ....+..|.+.|++++|.+++.. +++++.|+.|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i 312 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTI 312 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCE-EEEcCCCccE
Confidence 44666766 599999999999999999999999999999998754 34566678889999998877654 5555778999
Q ss_pred EEEeCCCCc--eEEeecCC--C-CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee---EEcCCCCC
Q 024372 171 RLWDARSGK--IVQTLETK--S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA---SLEPKLGN 241 (268)
Q Consensus 171 ~iwd~~~~~--~~~~~~~~--~-~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 241 (268)
+|||+.+++ ++..+... . ++.++.|+|++++++++ .|+.+++||++....+..+..+...... ......+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 999999999 56666432 2 58999999999998875 5779999999998888888765443111 11233689
Q ss_pred EEEeccCCCeEEEEECCCCcEEee
Q 024372 242 IFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
++++|+.|+.|++||..+++.+..
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGILQR 416 (456)
T ss_pred eEEEEeCCceEEEEeCCccchhhh
Confidence 999999999999999998776554
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.6e-35 Score=239.05 Aligned_cols=245 Identities=23% Similarity=0.417 Sum_probs=207.5
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 94 (268)
-+..|++|+|+ .+|..||+|+.||.+++|+. .|.++.+|..|+++|.++.|..+|.||++++.|+++.+||..++.
T Consensus 234 ~nkdVT~L~Wn---~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 234 SNKDVTSLDWN---NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred ccCCcceEEec---CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 34689999998 49999999999999999995 578899999999999999999999999999999999999999999
Q ss_pred eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 95 EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 95 ~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
....++ |..+-..|.|-.+. .+++++.|+.|+++-+.... +...+.+|.++|.++.|+|.+ .+|++|++|++++||
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIW 386 (524)
T ss_pred EEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCC-ceEEEecCCCeeEee
Confidence 888886 44454667776544 57899999999999987544 445555688999999999866 578899999999999
Q ss_pred eCCCCceEEeecCC-CCEEEEEECCCCc----------EEEEeCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCC
Q 024372 174 DARSGKIVQTLETK-SPVTSAEVSRDGR----------YITTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGN 241 (268)
Q Consensus 174 d~~~~~~~~~~~~~-~~v~~~~~s~~g~----------~l~~~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (268)
......+++.+..| ..+..+.|+|.|. ++.++.|.+|++||+..+.++.++.. ..++.++.++| +|+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ 465 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGR 465 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCc
Confidence 98888888877754 4689999998662 34456789999999999999999854 55667778777 699
Q ss_pred EEEeccCCCeEEEEECCCCcEEeecc
Q 024372 242 IFIAGGEDMWVHVFDFHTGEQIAITS 267 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~~~g~~~~~~~ 267 (268)
++++|+.|+.|.+|+.++|+.++.+.
T Consensus 466 ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred EEEecCCCCeeEeccccchheeEeec
Confidence 99999999999999999999988753
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=226.31 Aligned_cols=249 Identities=23% Similarity=0.377 Sum_probs=202.0
Q ss_pred eecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 7 AVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 7 ~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
.+|.+. .+|++.|+.+.|+| +|.+||+|+.|..|.+|++.. -+....+++|++.|..+.|.+|+..++|+|.|++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred cchhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce
Confidence 344444 69999999999996 899999999999999999654 3566778899999999999999999999999999
Q ss_pred EEEEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 85 AKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
++.||++++++.+.+. |...|+.+.-+. ...++.+|+.|+++|+||+++.+.. +.+ ..+-.++++.|.......++
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~-~t~-~~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI-KTF-ENKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-hcc-ccceeEEEEEecccccceee
Confidence 9999999999988774 888898887333 4468889999999999999864432 222 23457889999877766665
Q ss_pred EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc----eeeeEEeCCC-----Cce
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF----GLVKGYNMPC-----NTE 231 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~----~~~~~~~~~~-----~~~ 231 (268)
++ =|+.|++||+|.++..+++.++ .+|..+..+|+|.++.+ +=|.++++||++.+ ++++.+..+. +..
T Consensus 192 gg-Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 GG-IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred cc-ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 55 5699999999999999999866 46999999999999877 45889999999875 4566665432 344
Q ss_pred eeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
.++++| .++.+.+|+.|+.+|+||...-..
T Consensus 271 ~cswsp-~~~~i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 271 KCSWSP-NGTKITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred eeeccC-CCCccccccccceEEEeecccccE
Confidence 566676 588888999999999999865343
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.5e-34 Score=221.86 Aligned_cols=234 Identities=23% Similarity=0.354 Sum_probs=203.3
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
+.=|-.++|+| .|+++|+|+.|..+.||++.+. +..+.+.+|++-+.+|.|-+|+ +|+|+|.|.+.-+||
T Consensus 97 s~WVMtCA~sP---Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 97 SSWVMTCAYSP---SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWD 172 (343)
T ss_pred ceeEEEEEECC---CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEE
Confidence 44577899985 8999999999999999998854 3457789999999999998865 567999999999999
Q ss_pred CCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 90 ALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
+++++....|. |..-|.+++++| +++++++|+-|+..++||++.+. -.+.+..|...|+++.|+|++. -+++|++|
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~-afatGSDD 250 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGD-AFATGSDD 250 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCC-eeeecCCC
Confidence 99999988885 888999999999 99999999999999999999874 3567778999999999999876 46788999
Q ss_pred CeEEEEeCCCCceEEeecCC---CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee-EEcCCCCCE
Q 024372 168 GGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA-SLEPKLGNI 242 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 242 (268)
++.|+||+|..+.+..+++. .++++++||..|++|.++ .|.++.+||.-+.+.+-.+..+.+..++ ...| +|-.
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMA 329 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcE
Confidence 99999999999999888753 579999999999998875 6899999999888888777777765544 4555 7999
Q ss_pred EEeccCCCeEEEEE
Q 024372 243 FIAGGEDMWVHVFD 256 (268)
Q Consensus 243 ~~~gs~d~~i~~wd 256 (268)
+++||.|.++++|.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=233.40 Aligned_cols=246 Identities=19% Similarity=0.322 Sum_probs=210.7
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
++.||.+=|.++++.| ..+++++|+.|++++|||+.+|++..++.||...|+.+++++...|+.+++.|++|+.||+
T Consensus 146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 3469999999999986 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 91 ~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
+.++.++.+ .|-+.|.+++.+|....|++|+.|.++|+||+++.. ....+.+|..+|..+.+.|-++.++ +|+-|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-TGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-EecCCce
Confidence 999987765 588899999999999999999999999999998743 4556678899999999887777554 6677899
Q ss_pred EEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 248 (268)
|++||++.|+.+.++.++ ..+.+++.+|....++++.-..|+-|++-.+..+..+..+..+. ..+.-+++.++++|++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ii-ntl~~nsD~v~~~G~d 379 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAII-NTLSVNSDGVLVSGGD 379 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccccee-eeeeeccCceEEEcCC
Confidence 999999999998887654 56999999999988888877799999998776666555443322 2223335788999999
Q ss_pred CCeEEEEECCCCcE
Q 024372 249 DMWVHVFDFHTGEQ 262 (268)
Q Consensus 249 d~~i~~wd~~~g~~ 262 (268)
++.|..||.++|-.
T Consensus 380 ng~~~fwdwksg~n 393 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHN 393 (460)
T ss_pred ceEEEEEecCcCcc
Confidence 99999999987654
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-35 Score=237.48 Aligned_cols=252 Identities=22% Similarity=0.303 Sum_probs=212.5
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
++..|+++|+-+.|++ +|+|||+||.|.+..||.+.. -++..++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus 219 il~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hHhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 4568999999999985 999999999999999997654 3568899999999999999999999999999999999
Q ss_pred EeCCCCCeeeeeccC--CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 88 WDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 88 w~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
||+.++...+.+++. ..+.+++|.||+..+++|+.|+.|.+||++.... ..=.+-....|.+++..++|..+++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEec
Confidence 999999999988866 6789999999999999999999999999864321 1111112245888999999988888775
Q ss_pred CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC---ceeeEEcCCCCC
Q 024372 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLGN 241 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 241 (268)
|..|++++.++..+......+.++.+..+|.||+++... .+.++.+||++....++.|..+.. ....+|-..+..
T Consensus 375 -d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 -DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred -ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 599999999988877777777899999999999998765 789999999998888888876432 345566554567
Q ss_pred EEEeccCCCeEEEEECCCCcEEeecc
Q 024372 242 IFIAGGEDMWVHVFDFHTGEQIAITS 267 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~~~g~~~~~~~ 267 (268)
++++||+|++||+|+-.+|+++++.+
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeec
Confidence 88999999999999999999999864
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=248.72 Aligned_cols=248 Identities=22% Similarity=0.287 Sum_probs=221.3
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+..|++.|.++.|+|..| +++++-.+|.+.||+-++...++.|.-..-||+++.|-.....+++||.|..||+++.+
T Consensus 9 ~~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 445999999999999766 89999999999999999999999998888999999999999999999999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
+...+..|+ |.+.|++++.||....++|++.|.+|++||.+..-...+.+.+|...|.+++|+|.+.+.+++++-|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 999999986 9999999999999999999999999999999876656678888999999999999999999999999999
Q ss_pred EEEeCCCCceEEeecCC-CCEEEEEECCCC--cEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec
Q 024372 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDG--RYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g--~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (268)
++|.+.+..+..+++.| ..|+++.+-|.| -++++ ++|.+|++||.++..|+++...+.+..+..++.+.=.++++|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 99999999998999865 459999998766 46655 578999999999999999998776655555554468899999
Q ss_pred cCCCeEEEEECCCCcE
Q 024372 247 GEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 247 s~d~~i~~wd~~~g~~ 262 (268)
|+||++++|+..|.++
T Consensus 246 sEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCccEEEecCcceeh
Confidence 9999999999876554
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-34 Score=245.52 Aligned_cols=248 Identities=22% Similarity=0.325 Sum_probs=211.3
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
.||...+++++++| ||+++|+|+.|++|+|||...|-++.+|..|++.|..++|+..+..++|.|-||+||.||+..
T Consensus 347 QgH~~~i~~l~YSp---Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 347 QGHSDRITSLAYSP---DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cccccceeeEEECC---CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 48999999999985 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeccCCeE--EEEEECCCCCEEEEeeCCCe-EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 93 GDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 93 ~~~~~~~~~~~~v--~~v~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
..+.+++..+.++ .|++..|.|.++++|+.|.. |++|++.+++ ......+|.++|.+++|+|.+. .+++++.|++
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT 501 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGS-LLASGSWDKT 501 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccC-eEEeccccce
Confidence 9999999877765 47888888999999988864 9999998875 3456678999999999998776 6778888999
Q ss_pred EEEEeCCC-CceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeee----------------EEeCC----
Q 024372 170 VRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK----------------GYNMP---- 227 (268)
Q Consensus 170 i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~----------------~~~~~---- 227 (268)
||+||+-. ...+.+++....+..++|.|+|+-++.+ -|+.|.+||.+....+- .+...
T Consensus 502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~ 581 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK 581 (893)
T ss_pred EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence 99999854 3467778888889999999999998765 58999999986433221 11111
Q ss_pred -CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 228 -CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
.....++.++ +|..+++||....|.+||+.++-.+..+
T Consensus 582 ~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 582 GKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred CCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeE
Confidence 2345677787 6999999999999999999998887764
No 23
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=251.40 Aligned_cols=237 Identities=21% Similarity=0.329 Sum_probs=195.5
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-------------------------------------------
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------------------------------- 50 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------------------------------------------- 50 (268)
+|.+.|+++.|++ ||+|||+|+.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 7999999999984 999999999999999996544
Q ss_pred -----------------CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC-
Q 024372 51 -----------------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE- 112 (268)
Q Consensus 51 -----------------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~- 112 (268)
-+.++.|.||.+.|+.++|+.+ .+|+|+|.|+|||||++....++..|.|.+.|+||+|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0123566899999999999965 578899999999999999999999999999999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC------
Q 024372 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------ 186 (268)
Q Consensus 113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------ 186 (268)
|.+++++|+-|+.+|||++... ...........|++++|.|+|+..++ |+.+|.+++|+++..+....+..
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 8899999999999999998643 23344445578999999999776555 55669999999998776544321
Q ss_pred ---CCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 187 ---~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+..|..+.+.|.. ++|+++.|..|||+|++.-.++..|.... ......+.. +|+++|+|++|..||+|+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 2369999998765 48889999999999998777766665432 234566676 79999999999999999974
No 24
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-34 Score=221.85 Aligned_cols=246 Identities=25% Similarity=0.446 Sum_probs=199.7
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
.|+.+.||+.|++.+.|+ .+|.+|++++.|.+..+|-...|+.+.++.||++.|++|....+.++++||+.|.++++
T Consensus 2 rpi~l~GHERplTqiKyN---~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYN---REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred CccccccCccccceEEec---CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 478899999999999998 59999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeeeeec------------------------------------------------------cCCeEEEEEECCC
Q 024372 88 WDALTGDEKHSFE------------------------------------------------------HKHIVRACAFSED 113 (268)
Q Consensus 88 w~~~~~~~~~~~~------------------------------------------------------~~~~v~~v~~~~~ 113 (268)
||+.+++++..+. +.+.++.+-|+|-
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 9999887544331 1123556678888
Q ss_pred CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEE
Q 024372 114 THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193 (268)
Q Consensus 114 ~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (268)
++++++|..||.|..||++++.........|...|+.++++++.. ++++++.|.+-++||.++.++++++....|+++.
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccccce
Confidence 899999999999999999877655555556777899999988765 5667778899999999999999999999999999
Q ss_pred EECCCCcEEEEeCCCe---------------EEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 194 EVSRDGRYITTADGSS---------------VKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 194 ~~s~~g~~l~~~~~~~---------------v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
+++|-..+++.+.+.. .|+|++-..+.+-.+..+.+ +.+++++| +|..+++|++||.|++..+
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEe
Confidence 9999877766544322 23333322222333333433 45677777 7999999999999999877
Q ss_pred C
Q 024372 258 H 258 (268)
Q Consensus 258 ~ 258 (268)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 5
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=237.75 Aligned_cols=243 Identities=23% Similarity=0.366 Sum_probs=206.0
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 96 (268)
.+|..+.|. |+|+.|++|+..|...+|+...-.+...+..|..+|+++.|++++.+++||..+|.||+|+.+.+..+
T Consensus 97 c~V~~v~Wt---PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWT---PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEEEc---CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 388899997 59999999999999999998554333345789999999999999999999999999999998777666
Q ss_pred eeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 97 HSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 97 ~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
....|. +.|++++|+|+...+++++.|+.|++||...+.. .+.+..|.-.|.+++|.|.- .+++++++|+.|++||.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDP 251 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecC
Confidence 555554 8999999999999999999999999999876543 34446777889999998754 57778889999999999
Q ss_pred CCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeE
Q 024372 176 RSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWV 252 (268)
Q Consensus 176 ~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i 252 (268)
++++|+.++. ++..|..+.|+|++++|++ +.|..++++|++..+.+..+..+. ...++.++|-...+|++|+.|+.|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 9999999886 4566999999999999887 568999999999888888887544 567888888888999999999999
Q ss_pred EEEECCCCcEEe
Q 024372 253 HVFDFHTGEQIA 264 (268)
Q Consensus 253 ~~wd~~~g~~~~ 264 (268)
..|.+...+++.
T Consensus 332 vh~~v~~~~p~~ 343 (464)
T KOG0284|consen 332 VHWVVGLEEPLG 343 (464)
T ss_pred EEEecccccccc
Confidence 999987555543
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=213.19 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=186.0
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--eeeec-cCCeEEE
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSFE-HKHIVRA 107 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~-~~~~v~~ 107 (268)
--+|++++.|.+||+|...+|.+.+++....+.|..+++.|++..||.++. ..||+||++++.+ +.+++ |...|..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 358999999999999999999999999977889999999999999887764 5899999987664 66665 7788999
Q ss_pred EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--
Q 024372 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-- 185 (268)
Q Consensus 108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-- 185 (268)
+.|..+|+++++|+.||++|+||++.. ..+....+..+|+++...|.+.. +++|..+|.|++||++...+...+-
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~~~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNYQHNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCc--ccchhccCCCCcceEEecCCcce-EEeecCCCcEEEEEccCCccccccCCC
Confidence 999999999999999999999999873 34444556789999998776655 5566778999999999988877663
Q ss_pred CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCC------ceeeeEEeCCCCc-eeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 186 TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANH------FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 186 ~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
...++.++.+.|||.++++.. .|.+.+|++-+ ..++..|+.+... ..+.++| ++++|+++|.|.++++|+.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEec
Confidence 346799999999999998875 58999999854 2344555555544 4455555 7999999999999999998
Q ss_pred CCC
Q 024372 258 HTG 260 (268)
Q Consensus 258 ~~g 260 (268)
++-
T Consensus 245 ~~~ 247 (311)
T KOG0315|consen 245 DDF 247 (311)
T ss_pred CCc
Confidence 755
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=245.81 Aligned_cols=248 Identities=23% Similarity=0.359 Sum_probs=205.0
Q ss_pred ceeeecEEeeecCCCeeeEE-EecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCC-cEEE
Q 024372 4 RKVAVPLVCHGHSRPVVDLF-YSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSA 77 (268)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~-f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l~ 77 (268)
+.+++- +++||++.|.+++ |+ +|-+|+|||.|+++++|..+.+ -+++...||++.|.+++++..+ .+|+
T Consensus 354 ~~~~c~-ii~GH~e~vlSL~~~~----~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 354 PTSYCQ-IIPGHTEAVLSLDVWS----SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred CCCceE-EEeCchhheeeeeecc----cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 344444 5789999999998 43 6789999999999999976433 2566778999999999997655 6899
Q ss_pred EeeCCCcEEEEeCCCCCee-----e-----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372 78 SGSADFTAKLWDALTGDEK-----H-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147 (268)
Q Consensus 78 s~s~D~~v~iw~~~~~~~~-----~-----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 147 (268)
|+|.|+++++|++...+.. . ...|...|++|+.+|+.+++||||.|++.++|+++.. .....+.+|+-.
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RG 507 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRG 507 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccc
Confidence 9999999999998652211 1 1138889999999999999999999999999999733 233456678889
Q ss_pred EEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe
Q 024372 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~ 225 (268)
+.++.|++.++ ++++|+.|++||||.+.+++|+++|++ .+.|..+.|-.+|+.+++ ++||.|++|++.+.+|+.++.
T Consensus 508 vw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 508 VWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred eEEEEeccccc-eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 99999998765 677888889999999999999999995 567999999999887765 679999999999999999998
Q ss_pred CCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 226 MPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
.+.. ..++...+ ...+|++|+.|+.|.+|.-.|
T Consensus 587 ~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 587 AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hccceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 7654 67777777 477999999999999997444
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-33 Score=227.92 Aligned_cols=243 Identities=23% Similarity=0.357 Sum_probs=210.1
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
..|..|.+||.++.|+ .+|.||++++.|+++.+||..+|+....|.-|+.+-..|.|-.+.. +++++.|+.|+++.
T Consensus 270 ~tl~~HkgPI~slKWn---k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWN---KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE-FATSSTDGCIHVCK 345 (524)
T ss_pred hhhhccCCceEEEEEc---CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce-EeecCCCceEEEEE
Confidence 3456899999999998 6899999999999999999999999999999999977888876554 68999999999999
Q ss_pred CCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC--------cE
Q 024372 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ--------TI 160 (268)
Q Consensus 90 ~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~ 160 (268)
+....++.++ .|..+|.++.|+|.+.+|++++.|+++++|...... ....+..|...|..+.|+|.++ ..
T Consensus 346 v~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~ 424 (524)
T KOG0273|consen 346 VGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLM 424 (524)
T ss_pred ecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCce
Confidence 9877766665 488899999999999999999999999999975432 2334445667888888887653 46
Q ss_pred EEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCCCceeeEEcCC
Q 024372 161 LSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPK 238 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 238 (268)
+++++.|++|++||+..+.++++| .|..+|.+++|+|+|+++++++ |+.|.+|+.+.++.++.+.....+..++|..
T Consensus 425 l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~- 503 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNA- 503 (524)
T ss_pred EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcC-
Confidence 777778899999999999999998 5778899999999999999874 8999999999999999998887778888887
Q ss_pred CCCEEEeccCCCeEEEEECC
Q 024372 239 LGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 239 ~~~~~~~gs~d~~i~~wd~~ 258 (268)
.|+.+.++..|+.+.+-|++
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 58889999999999998874
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.9e-33 Score=241.81 Aligned_cols=240 Identities=27% Similarity=0.475 Sum_probs=197.4
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC-CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.+|...|++++|+| ||.++++++.|++++|||+ ..+..++++++|...|++++|+|++.++++|+.|++||+||+.
T Consensus 200 ~~h~~~v~~~~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cccccceeeeEECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 68999999999985 9999999999999999999 5568999999999999999999999999999999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEe-cCCcc-cEEEEEEeCCCCcEEEEeeCC
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREV-GNSSG-SIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~-~~~~~-~v~~~~~~~~~~~~~~~~~~d 167 (268)
++.+...+. |...|.+++|++++..|++++.|+.|++||+.++... .... ..... +++++.|+|++.+++ ++..|
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll-~~~~d 355 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL-SASLD 355 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE-EecCC
Confidence 999988886 8889999999999999999999999999999876521 1222 22222 689999998876655 55677
Q ss_pred CeEEEEeCCCCceEEeecCCCC----EEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-CCc-eeeEEcCCCC
Q 024372 168 GGVRLWDARSGKIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNT-ESASLEPKLG 240 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 240 (268)
+.+++||++.++++.++..+.. +.+...+++++++.++ .|+.|.+||..+...+..+..+ ... ....+.+ ..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence 9999999999999887764322 3344457888888765 6899999999987777777666 333 3344444 67
Q ss_pred CEEEecc--CCCeEEEEEC
Q 024372 241 NIFIAGG--EDMWVHVFDF 257 (268)
Q Consensus 241 ~~~~~gs--~d~~i~~wd~ 257 (268)
.++++++ .|+.|++|..
T Consensus 435 ~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeeeecCcCCCceEEEecC
Confidence 8888887 6999999974
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-34 Score=226.54 Aligned_cols=248 Identities=22% Similarity=0.346 Sum_probs=210.1
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+.||..+|+.+-|+| +-...++++.|.+|++||..+|++.+.++||++.|..++|+..|+++++++.|-.+++||..
T Consensus 104 l~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 458999999999997 55689999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-Cee-eeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 92 TG-DEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 92 ~~-~~~-~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
+. .+. ....|...|.++.|-|.+..+++++.|++|+.|+..++... ..+..|...+..++.+. ++.++++|+.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv-~t~~~h~ewvr~v~v~~-DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV-KTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE-EeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence 63 232 23458889999999999999999999999999999887654 44456677999999765 5578999999999
Q ss_pred EEEEeCCCCceEEeec-CCCCEEEEEECCC---------------CcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-e
Q 024372 170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRD---------------GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-E 231 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~---------------g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~ 231 (268)
|++|-+.+++|...+. +..++.+++|.|. +.++.+ +.|++|++||+.++.++-++..+.+. .
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 9999999998877775 4567888888641 246554 46999999999999998888776664 4
Q ss_pred eeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.++++| .|++++++.+|+.+++||+++++.+.+
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeec
Confidence 556666 699999999999999999999887764
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=222.82 Aligned_cols=242 Identities=21% Similarity=0.349 Sum_probs=192.8
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee---CccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
..|.+.|+++.|+| ||..+|+++.||++.+||..+|+.++.|. +|++.|++++|+||+..++|+|.|+++||||
T Consensus 187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 47999999999995 99999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCCeeeee--------------------------------------------ccCCeEEEEEECCCCCEEEEeeCCCe
Q 024372 90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI 125 (268)
Q Consensus 90 ~~~~~~~~~~--------------------------------------------~~~~~v~~v~~~~~~~~l~s~~~d~~ 125 (268)
+.++.+.+++ .|...|+++..+++++.|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 9776543332 26677999999999999999999999
Q ss_pred EEEEECCCCCCCCe----------EecCCc--------------------------------------------------
Q 024372 126 LRIFDLNRPDAPPR----------EVGNSS-------------------------------------------------- 145 (268)
Q Consensus 126 i~~~d~~~~~~~~~----------~~~~~~-------------------------------------------------- 145 (268)
|.-||..++..-.. .+....
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 99999764321100 000000
Q ss_pred --------------------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc---eEEeecCCCCEEEEEECCCCcEE
Q 024372 146 --------------------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYI 202 (268)
Q Consensus 146 --------------------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 202 (268)
-...+++.+|++ ..++.|+.|+.|+||.+..++ ....+++.+++.++++|||+.||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 012355655554 456667788999999997644 33556788899999999999999
Q ss_pred EEeC-CCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 203 TTAD-GSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 203 ~~~~-~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
++++ .+.|.+||+..++. ...+..+ ..+..++|+| +..++++||.|..|++|+++.
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccC
Confidence 9875 68999999987654 3334433 3566778887 689999999999999999863
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.8e-31 Score=218.28 Aligned_cols=250 Identities=29% Similarity=0.493 Sum_probs=207.6
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.+.+|.++|.+++|+| ++++|++++.|+.+++|+..+++....+..|...+..+.|.+++.++++++.|+.+++|++
T Consensus 4 ~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 4 TLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred HhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 3568999999999985 7889999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
.+++....+. |...+.++.|+++++++++++.++.+++||+++.+. ......|...+.++.|+|++ .+++++..++.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~ 158 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT 158 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCc
Confidence 8876655554 666899999999988998888899999999975432 33444567789999998874 45666665799
Q ss_pred EEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEec
Q 024372 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAG 246 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g 246 (268)
|++||+++++.+..+..+ ..+.++.++|+++.++ ++.++.|++||++....+..+.. ......+.+.+ ++.+++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 237 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASG 237 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEE
Confidence 999999998888877654 4799999999996655 45689999999998877777743 33556677776 48888888
Q ss_pred cCCCeEEEEECCCCcEEeec
Q 024372 247 GEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 247 s~d~~i~~wd~~~g~~~~~~ 266 (268)
+.|+.|++||+.+++.+..+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred cCCCcEEEEEcCCceeEEEc
Confidence 88999999999888776553
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.1e-31 Score=246.73 Aligned_cols=240 Identities=16% Similarity=0.237 Sum_probs=196.0
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~ 91 (268)
..+...|.+++|+| +++.+||+++.|++|++||..+++.+..+.+|.+.|.+++|+| ++.+|+||+.|++|++||+.
T Consensus 529 ~~~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 529 LASRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ecccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 34567899999987 4678999999999999999999999999999999999999996 77899999999999999999
Q ss_pred CCCeeeeeccCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~~~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
++.....+.+...+.++.|+ +++..+++|+.|+.|++||++...........|...|.++.|. ++. .+++++.|++|
T Consensus 607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~i 684 (793)
T PLN00181 607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTL 684 (793)
T ss_pred CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEE
Confidence 98888888777788999995 5799999999999999999986554445556788899999996 343 56666778999
Q ss_pred EEEeCCCC------ceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeC--------------CC
Q 024372 171 RLWDARSG------KIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNM--------------PC 228 (268)
Q Consensus 171 ~iwd~~~~------~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~--------------~~ 228 (268)
+|||++.+ .+++.+..+ ..+..+.++|++.+++++ .|+.|++|+......+..+.. ..
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 764 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ 764 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc
Confidence 99999853 456777654 458899999999998765 689999999865543333321 11
Q ss_pred CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 229 NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
.+..+++.+ ++.+|++|+.|+.|++|++
T Consensus 765 ~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 765 FISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 244566666 6899999999999999986
No 34
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.9e-31 Score=229.44 Aligned_cols=226 Identities=20% Similarity=0.288 Sum_probs=177.0
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCC-cEEEEee
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS 80 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s 80 (268)
+..+.||.++|++++|+|. ++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++
T Consensus 68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 4457799999999999973 6789999999999999998765 3567899999999999999985 6899999
Q ss_pred CCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCC
Q 024372 81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQ 158 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~ 158 (268)
.|++|+|||+.++.....+. |...|.+++|+|++.+|++++.|+.|++||++++.. ......|.+. ...+.|.+++.
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCC
Confidence 99999999999988877775 788999999999999999999999999999987653 3334445443 44667888777
Q ss_pred cEEEEee---CCCeEEEEeCCCCc-eEEeec--CCCCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCceeeeEEeCCC--
Q 024372 159 TILSSCT---DSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLVKGYNMPC-- 228 (268)
Q Consensus 159 ~~~~~~~---~d~~i~iwd~~~~~-~~~~~~--~~~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~~~~~~~~~~-- 228 (268)
.++++|. .|++|++||+++.. .+.... ....+....++|++++++. + .|+.|++||+++...+.......
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 7776653 46899999998754 444433 2344666789999988764 4 48999999999887665544322
Q ss_pred CceeeEEcC
Q 024372 229 NTESASLEP 237 (268)
Q Consensus 229 ~~~~~~~~~ 237 (268)
.....++.|
T Consensus 305 ~~~g~~~~p 313 (493)
T PTZ00421 305 PHKGLCMMP 313 (493)
T ss_pred CCcceEecc
Confidence 234455554
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-30 Score=212.56 Aligned_cols=242 Identities=27% Similarity=0.448 Sum_probs=204.5
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw 88 (268)
...+.+|..++..+.|.| ++++|++++.|+.+++|+..+++.+..+..|...|.++.|.+++.++++++.|+.+++|
T Consensus 44 ~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 44 LRTLKGHTGPVRDVAASA---DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred EEEEecCCcceeEEEECC---CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 345568999999999985 77899999999999999999988888999999999999999998888988889999999
Q ss_pred eCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 89 DALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 89 ~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
|+.+++....+. |...+.++.|+|+++++++++.++.+++||++..+. ......+...+.++.|.+++..+++++ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~ 198 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSS-SD 198 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEec-CC
Confidence 999777777665 777899999999999999888899999999975543 344446677899999998876666554 47
Q ss_pred CeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEE
Q 024372 168 GGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFI 244 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 244 (268)
+.|++||+++++.+..+ .+...+.++.++|++.++++++ ++.|++||++..+.+..+..+. ....+.+.+ ++.+|+
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 277 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLA 277 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEE
Confidence 99999999999988888 4555799999999998888776 8999999999887777766443 355666766 589999
Q ss_pred eccCCCeEEEEE
Q 024372 245 AGGEDMWVHVFD 256 (268)
Q Consensus 245 ~gs~d~~i~~wd 256 (268)
+++.|+.|++||
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=228.76 Aligned_cols=250 Identities=19% Similarity=0.316 Sum_probs=209.1
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCC-CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d-~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
.-.+.--..+|..++|+. .|.+||.|+.- |.+.||+..+..++-...||...+.+++++|||+++|||+.||.|||
T Consensus 300 ih~LSis~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecccceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 333333456889999984 68899988654 78999999998888888999999999999999999999999999999
Q ss_pred EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEee
Q 024372 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
||...+-|..+|. |...|+.++|+..++.+++.+-||++|.||+..... .+.+. ...-...|++..|.+..+++++-
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 9999999999985 999999999999999999999999999999975432 22222 22223567887777776666554
Q ss_pred CCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCC-ceeeeEEeCCCCceeeEEcCCCCCE
Q 024372 166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH-FGLVKGYNMPCNTESASLEPKLGNI 242 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (268)
+.=.|++|++++|+.+-.+.+ .+||.+++|+|+|..|+++ -|.+||+||+-. ...+.++...+....+.+.| +|+.
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~e 534 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKE 534 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCe
Confidence 444799999999999999975 5789999999999998875 599999999843 45678888888888999988 6999
Q ss_pred EEeccCCCeEEEEECCCCcEE
Q 024372 243 FIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 243 ~~~gs~d~~i~~wd~~~g~~~ 263 (268)
++.+..||.|-+||.+.+.++
T Consensus 535 laVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 535 LAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEEEEecceEEEEEhhhceee
Confidence 999999999999999877665
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=227.30 Aligned_cols=245 Identities=18% Similarity=0.267 Sum_probs=201.3
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
++..|..+|+++.|++ +|.++++|..+|.|++|+..-.. +..+.+| ...|++++|+|+...++|+|.|++|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~---~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSH---NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEcc---CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 3468999999999984 89999999999999999986553 3445555 48999999999999999999999999999
Q ss_pred CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (268)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 168 (268)
....+..+.+. |.-.|+++.|+|...++++|+.|+.+++||.+++..... ...|+..|..+.|++.+ ++|++++.|.
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t-lh~HKntVl~~~f~~n~-N~Llt~skD~ 286 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT-LHGHKNTVLAVKFNPNG-NWLLTGSKDQ 286 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh-hhhccceEEEEEEcCCC-CeeEEccCCc
Confidence 98777655554 777899999999999999999999999999998776544 34677899999999877 7778888999
Q ss_pred eEEEEeCCCCceEEeec-CCCCEEEEEECCCC-cEEE-EeCCCeEEEEeCCCceeeeEEeC--CCCceeeEEcCCCCCEE
Q 024372 169 GVRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIF 243 (268)
Q Consensus 169 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g-~~l~-~~~~~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 243 (268)
.++++|+|+-+.+..+. +...+.+++|+|-. .+++ ++.|+.|..|.+...+++-.... ...+.+..++| -|++|
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeE
Confidence 99999999888888887 45669999999964 3444 45789999999875555544433 34567888888 79999
Q ss_pred EeccCCCeEEEEEC-CCCcE
Q 024372 244 IAGGEDMWVHVFDF-HTGEQ 262 (268)
Q Consensus 244 ~~gs~d~~i~~wd~-~~g~~ 262 (268)
++|+.|..+++|.- +.|+.
T Consensus 366 ~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred eecCCCcceeeeccCCCCCc
Confidence 99999999999963 23443
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-30 Score=202.78 Aligned_cols=255 Identities=23% Similarity=0.282 Sum_probs=206.0
Q ss_pred ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee--C
Q 024372 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS--A 81 (268)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s--~ 81 (268)
+++..+.++..-.+.|++++|++ +|.+|++++.|.++++||..+|+.++++..++..|..++|......+..++ .
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCC
Confidence 45677777876788999999984 999999999999999999999999999999999999999976655554444 4
Q ss_pred CCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372 82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (268)
Q Consensus 82 D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (268)
|.+||.-++.+++.++.+. |...|..++.+|-+..+++++.|++|++||++....+-.. .. ......+|.|+| .+
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~-~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NL-SGRPIAAFDPEG-LI 154 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ec-CCCcceeECCCC-cE
Confidence 9999999999999999885 9999999999998899999999999999999865433222 22 223456777765 56
Q ss_pred EEEeeCCCeEEEEeCCCC--ceEEeec----CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc---
Q 024372 161 LSSCTDSGGVRLWDARSG--KIVQTLE----TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT--- 230 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~--~~~~~~~----~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~--- 230 (268)
++.+...+.|+|+|+|+- .+..++. ...+++.+.|||||+++.. ...+.+.+.|.-.+..+.++..+.+.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 666666569999999974 3455553 3467999999999998765 46678999998888888888764332
Q ss_pred -eeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 231 -ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 231 -~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
...++.| +++++++|+.||.|++|++++|+++++.
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 3555556 7999999999999999999999999875
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=223.33 Aligned_cols=231 Identities=19% Similarity=0.335 Sum_probs=189.3
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 94 (268)
..+.|.++.|. | ..+++|+.|.+|+|||..+.++++.+.||++.|.++.|. .+.++|||.|.+|++||++++.
T Consensus 196 ~skgVYClQYD----D-~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD----D-EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec----c-hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 56689999995 4 468899999999999999999999999999999998885 5589999999999999999999
Q ss_pred eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372 95 EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (268)
Q Consensus 95 ~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 171 (268)
++.++ .|-+.|..+.|+ ..++++++.|..|.+||+..+... -....+|...|+.+.|.. . ++++++.|++|+
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTik 343 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIK 343 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEE
Confidence 88776 477889999997 448999999999999999765421 122346888999998853 3 566667779999
Q ss_pred EEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccC
Q 024372 172 LWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGE 248 (268)
Q Consensus 172 iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~ 248 (268)
+|++.++++++++..|.. +.|+ --.|+++++| +|.+||+||+..+.+++....++... .+.| +.+.+++|+.
T Consensus 344 vW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaY 418 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY 418 (499)
T ss_pred EEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccc
Confidence 999999999999986644 4443 3356777764 68999999999999998888876543 3444 4778999999
Q ss_pred CCeEEEEECCCCcE
Q 024372 249 DMWVHVFDFHTGEQ 262 (268)
Q Consensus 249 d~~i~~wd~~~g~~ 262 (268)
||+|++||+.++..
T Consensus 419 DGkikvWdl~aald 432 (499)
T KOG0281|consen 419 DGKIKVWDLQAALD 432 (499)
T ss_pred cceEEEEecccccC
Confidence 99999999987653
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-32 Score=207.94 Aligned_cols=240 Identities=20% Similarity=0.236 Sum_probs=198.2
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALT 92 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~ 92 (268)
-++.+.+++|++. ..+.+++++.||++++||.... ..+..++.|+..|.++.|.+.. +.++++|+|++||+|+...
T Consensus 59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 4567889999984 4468999999999999995443 4788899999999999998754 5678889999999999999
Q ss_pred CCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 93 GDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 93 ~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+.++++. |...|....|+| .++++++++.|+..++||++.+... ..+..|..++.+..|++.+.+++++|+-|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-eEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 99888885 888999999999 6789999999999999999876433 34667788999999999999999999999999
Q ss_pred EEEeCCCCc-eEEeecCCC-CEEEEEECCCCcE-EEE-eCCCeEEEEeCCC-ceeeeEEeCCCCc-eeeEEcCCCCCEEE
Q 024372 171 RLWDARSGK-IVQTLETKS-PVTSAEVSRDGRY-ITT-ADGSSVKFWDANH-FGLVKGYNMPCNT-ESASLEPKLGNIFI 244 (268)
Q Consensus 171 ~iwd~~~~~-~~~~~~~~~-~v~~~~~s~~g~~-l~~-~~~~~v~~wd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 244 (268)
|.||+|.-+ ++..+..|. .|..+++||...- |++ +-|-++||||... ..++.++..+... ..+.+++-.+.+++
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence 999999854 455665544 5999999998754 443 4689999999874 4566677766654 44566666788999
Q ss_pred eccCCCeEEEEEC
Q 024372 245 AGGEDMWVHVFDF 257 (268)
Q Consensus 245 ~gs~d~~i~~wd~ 257 (268)
+.+.|+.++||+-
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999983
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.3e-31 Score=233.82 Aligned_cols=242 Identities=21% Similarity=0.356 Sum_probs=199.3
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+.||++.|.+++|.. .+.+|++||.|+++++||..+|+++..|.+|.+.|+++... ..++++||.|.+|++|++.
T Consensus 245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 679999999999963 46799999999999999999999999999999999887664 4567899999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
++..+..+. |..+|+++..+ +..+++|+.|+.|++||+...+.. .....|.+.|.++.+.+. ..+.+|+-|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-KSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-eeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999998 99999999988 779999999999999999866544 444568899999976543 456677778999
Q ss_pred EEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372 171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (268)
Q Consensus 171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 248 (268)
++||+++. +|++++.++..+. -.+...++++++ +.|++|++||...+++++++..++ ...+.+.......+++++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALGKEEILCSSD 472 (537)
T ss_pred EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecCcceEEEEec
Confidence 99999999 9999998876543 233444556554 579999999999999999988751 1122222112478999999
Q ss_pred CCeEEEEECCCCcEEee
Q 024372 249 DMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 249 d~~i~~wd~~~g~~~~~ 265 (268)
|+.+++||+++|+.+..
T Consensus 473 ~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred CCeeEEEecccCchhhh
Confidence 99999999999987663
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-31 Score=227.10 Aligned_cols=242 Identities=21% Similarity=0.318 Sum_probs=201.3
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
+.-...++--+.||+++.|-+ -.+++++||.|..|+|++..+++.+.+|..|.+-|++++.+|...+++|+|.|-+|
T Consensus 45 qtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 45 QTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ceeeeeeeecccchhhheeee---ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 334455566678999999986 45699999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCC-eeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-cEE
Q 024372 86 KLWDALTGD-EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TIL 161 (268)
Q Consensus 86 ~iw~~~~~~-~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 161 (268)
|+||.+..- +.++++ |.+.|..++|+| |.+.+++++-|+++++|.+..+. ....+..|...|+|+.|.+.+. -++
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYL 200 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceE
Confidence 999997654 566665 999999999999 77899999999999999998754 3455567888999999987663 378
Q ss_pred EEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCC
Q 024372 162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPK 238 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (268)
++|+||.+|+|||.++..|++++++| ..|..+.|+|.-.++++ ++|++||||...+++..++++..-. ...+...+
T Consensus 201 IsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k- 279 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK- 279 (794)
T ss_pred EecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-
Confidence 88899999999999999999999965 45999999999888766 5799999999999988888876533 34444444
Q ss_pred CCCEEEeccCCCeE
Q 024372 239 LGNIFIAGGEDMWV 252 (268)
Q Consensus 239 ~~~~~~~gs~d~~i 252 (268)
.+..++.|...+.|
T Consensus 280 ~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 280 GDGKIAVGFDEGSV 293 (794)
T ss_pred CCCeEEEeccCCcE
Confidence 34446666666544
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-30 Score=199.77 Aligned_cols=244 Identities=21% Similarity=0.357 Sum_probs=188.7
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEe-eCccCcEEEEEecCCCcEEEEeeC
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTF-EGHKGAVWSCCLDANALFSASGSA 81 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~l~s~s~ 81 (268)
+.....+.+|.+.+..++|+|. .|..||+++.|+.|++|+...+ .+...+ .+|+..|++++|+|.+++||++|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~--~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPG--KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccC--CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 3344556799999999999973 2779999999999999998853 344444 479999999999999999999999
Q ss_pred CCcEEEEeCCCC--Ceeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCcccEEEEEEeCC
Q 024372 82 DFTAKLWDALTG--DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 82 D~~v~iw~~~~~--~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~~~~ 156 (268)
|.++-||.-..+ +++.+++ |.+.|.+++|+++|++||+++.|+.+=+|.+..+.. -...+..|...|..+.|.|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999999986644 3566664 889999999999999999999999999998763321 12334567778999999875
Q ss_pred CCcEEEEeeCCCeEEEEeCCCC---ceEEeecCC-CCEEEEEECCCCcE-EEEeCCCeEEEEeCCCceeeeEEeCCCCce
Q 024372 157 DQTILSSCTDSGGVRLWDARSG---KIVQTLETK-SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCNTE 231 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~-~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~ 231 (268)
. -+|++++.|++||+|+-..+ ++++++..+ ..|-+++|+|.|.. +.+++|++|+||.+... +.. .+.....
T Consensus 162 ~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~-~~sr~~Y 237 (312)
T KOG0645|consen 162 E-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSG-MHSRALY 237 (312)
T ss_pred c-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--cch-hcccceE
Confidence 4 47778899999999987632 578888765 47999999999955 45678899999986521 100 0111223
Q ss_pred eeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 232 SASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.+.+. ...+++|+.|+.|++|.-.
T Consensus 238 ~v~W~---~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 238 DVPWD---NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred eeeec---ccceEeccCCCEEEEEEec
Confidence 34443 5679999999999999754
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-30 Score=240.80 Aligned_cols=244 Identities=16% Similarity=0.213 Sum_probs=190.6
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----C----eEEEeeCccCcEEEEEecC-CCcEEEEeeCCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF 83 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~----~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~ 83 (268)
.+|.+.|.+++|+| +|++||+|+.|++|+||+.... . .+..+.+ ...|.+++|++ ++.++++++.|+
T Consensus 480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence 35999999999995 8999999999999999997532 1 2233443 46788999986 467899999999
Q ss_pred cEEEEeCCCCCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372 84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 84 ~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
+|++||+.+++....+ .|...|.+++|+| ++.+|++|+.|+.|++||++.+... ..... ...+.++.|.++++.++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-~~~~~-~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-GTIKT-KANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-EEEec-CCCeEEEEEeCCCCCEE
Confidence 9999999988877766 4888999999997 7889999999999999999865432 33333 35788999977777788
Q ss_pred EEeeCCCeEEEEeCCCCc-eEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC------ceeeeEEeCCCCc-ee
Q 024372 162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGYNMPCNT-ES 232 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~------~~~~~~~~~~~~~-~~ 232 (268)
++|+.|+.|++||+++.+ .+..+. +...+.++.|.+...+++++.|+.|++||++. ..++..+..+... ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 888899999999998865 455554 44579999998544455567899999999974 2456666655443 44
Q ss_pred eEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
+.+.+ ++.+|++|+.|+.|++|+...+.++
T Consensus 714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred EEEcC-CCCEEEEEeCCCEEEEEECCCCCce
Confidence 55665 5899999999999999997655433
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.5e-31 Score=210.53 Aligned_cols=253 Identities=15% Similarity=0.255 Sum_probs=206.7
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
....|..|+.+|.+++.+| +.++++||+.|....+|+..+|++...+.+|++.|.++.|+.++.+||||..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 3455678999999999997 6679999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (268)
Q Consensus 88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 166 (268)
|+..++.....+. .-+.+-=+.|||-+.+|+.|+.||.+-+|.+++. ...+.+.+|+.++++=.|.|+++.++ ++.+
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~ 210 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL-TGYD 210 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE-EEec
Confidence 9999998877774 3344556889999999999999999999999864 45667778889999999999976655 5677
Q ss_pred CCeEEEEeCCCCceEEeecC------C-----------------C----------CE-------------------EEEE
Q 024372 167 SGGVRLWDARSGKIVQTLET------K-----------------S----------PV-------------------TSAE 194 (268)
Q Consensus 167 d~~i~iwd~~~~~~~~~~~~------~-----------------~----------~v-------------------~~~~ 194 (268)
||+|++||+.+++++..+.. + + .| .++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 89999999999998876651 0 0 00 0111
Q ss_pred ECCC---CcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeecc
Q 024372 195 VSRD---GRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267 (268)
Q Consensus 195 ~s~~---g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~~ 267 (268)
+.|- =.+.+++ =|++|-|||+.+...-+.+.+...+..+-|.+ ..+|++++.|+.||.||.++|+.+.+++
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEe
Confidence 1111 1233343 37899999998877667777777777777775 6889999999999999999999998864
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=221.80 Aligned_cols=245 Identities=19% Similarity=0.293 Sum_probs=191.4
Q ss_pred CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (268)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~ 81 (268)
|+..+.+...+.||++.|.++.|. ...+++||.|.+|+|||+++|+.+.++-+|...|.-+.|+ +.+++|+|.
T Consensus 223 D~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSk 295 (499)
T KOG0281|consen 223 DKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSK 295 (499)
T ss_pred ccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecC
Confidence 566677777889999999999994 4699999999999999999999999999999999999997 458899999
Q ss_pred CCcEEEEeCCCCCeee----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 82 DFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 82 D~~v~iw~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
|+++.+||+....... ...|...|+.+.|+ .+++++++.|++|++|++.+.+. .+.+..|+-.|-|+.|.
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQYr--- 369 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQYR--- 369 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee-ehhhhcccccceehhcc---
Confidence 9999999986544211 12478889999885 56999999999999999876543 35566777788887763
Q ss_pred CcEEEEeeCCCeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCCceeee---------EEeCC
Q 024372 158 QTILSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANHFGLVK---------GYNMP 227 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~---------~~~~~ 227 (268)
+.++++|+.|++||+||+..|.+++.+++|.. |.++-|.. .+.++++-||+|++||+....-.+ +.-.+
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h 448 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH 448 (499)
T ss_pred CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHHhhhhc
Confidence 46788888999999999999999999998766 67777753 345556679999999997642211 11111
Q ss_pred CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
++ ..+.... +...+++++-|..|.+||+.+|-.
T Consensus 449 sg-RVFrLQF-D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 449 SG-RVFRLQF-DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cc-eeEEEee-cceEEEeccCCCeEEEEEcCCCCc
Confidence 11 1222333 356788999999999999976643
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-31 Score=227.34 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=206.3
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+-|-.++|.++.|-- |+-++||.|++...+|+++..+..+. -+.||+..|.++....+|.+|+|||.|+++++|.++
T Consensus 319 ivG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hcCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 347788999999964 56689999999999999998887776 789999999999977788899999999999999885
Q ss_pred CCCeee-----eeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCC--CCe------EecCCcccEEEEEEeCCC
Q 024372 92 TGDEKH-----SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDA--PPR------EVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 92 ~~~~~~-----~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~--~~~------~~~~~~~~v~~~~~~~~~ 157 (268)
.+.... ...|.+.|.+++++.. ...|+++|.|.++++|++...+. .+. ....|.-.|++++++|++
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 444322 2248889999999774 46899999999999999875211 111 123467789999998876
Q ss_pred CcEEEEeeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeE
Q 024372 158 QTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESAS 234 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~ 234 (268)
.++++|+.|++.+||+++..+...++.+|. .+-++.|+|+.+.+++ +.|.+|+||.+.++.+++++..+.. +....
T Consensus 476 -kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 476 -KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred -ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence 588899999999999999999999998654 5999999999888765 6789999999999999999997654 44555
Q ss_pred EcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
|-. .|+.|++|+.||.|++|++++++.+..+
T Consensus 555 F~~-~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 555 FIR-NGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eee-CCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 554 6999999999999999999998876543
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-30 Score=199.95 Aligned_cols=238 Identities=21% Similarity=0.410 Sum_probs=187.9
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.+|+..|++++|+| .|++||+||.|.++.||.-..+ +++.+|+||+..|-+++|+++|.+|||+++|+.|-||.+
T Consensus 58 ~~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ccchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 47999999999995 8999999999999999987766 578999999999999999999999999999999999998
Q ss_pred CCCCe---eeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC-CCC-CCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 91 LTGDE---KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPD-APPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 91 ~~~~~---~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
..... ...+ +|..-|..+.|+|...+|+++++|++|++|.-. ... ...+.+..|...|.+++|.+.+. -++++
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~ 213 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSC 213 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEe
Confidence 75553 3333 488889999999988899999999999999754 222 22456667777999999988775 46678
Q ss_pred eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCC------ceeeeEE-e-CCCCceeeEEc
Q 024372 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANH------FGLVKGY-N-MPCNTESASLE 236 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~------~~~~~~~-~-~~~~~~~~~~~ 236 (268)
++|++++||-..+. -...+..++..+.|. +|.+.+++.|+.|++|.-.. ++.+-.. . +...+.++.+.
T Consensus 214 sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 214 SDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred cCCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 89999999986621 112244668889999 77666667889999997542 1111111 1 12246678888
Q ss_pred CCCCCEEEeccCCCeEEEEECC
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
|..+.+|++||.||.|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 8667899999999999999864
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=212.79 Aligned_cols=240 Identities=20% Similarity=0.351 Sum_probs=202.9
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.+.||-+.|.++++++..| ||++++.|+.|+-||++.++.++.+.||-..|++++..|.-+.++||++|.++|+||+
T Consensus 188 tltGhi~~vr~vavS~rHp---YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 188 TLTGHIETVRGVAVSKRHP---YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI 264 (460)
T ss_pred eecchhheeeeeeecccCc---eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeee
Confidence 3468999999999998777 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
.+...+..+. |..+|..+.+.|-...+++|+.|++|++||++.++.. ....+|+-.+.+++..|.. +++++++. ..
T Consensus 265 Rtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e-~~fASas~-dn 341 (460)
T KOG0285|consen 265 RTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKE-NLFASASP-DN 341 (460)
T ss_pred cccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCch-hhhhccCC-cc
Confidence 9999988886 9999999999986667899999999999999876543 4445778889999977654 56667666 46
Q ss_pred EEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe---CC------CCceeeEEcCCC
Q 024372 170 VRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN---MP------CNTESASLEPKL 239 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~---~~------~~~~~~~~~~~~ 239 (268)
|+-|++..|+.++.+..+. -+++++...||-++++++++.+.+||.+.+-..+... .+ .++...+|.. .
T Consensus 342 ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-t 420 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-T 420 (460)
T ss_pred ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-c
Confidence 9999999999888887654 4899999999988888899999999998764433332 11 1223445554 7
Q ss_pred CCEEEeccCCCeEEEEEC
Q 024372 240 GNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 240 ~~~~~~gs~d~~i~~wd~ 257 (268)
|..|++|..|..|++|.-
T Consensus 421 g~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKE 438 (460)
T ss_pred CceEEeccCCcceEEEec
Confidence 999999999999999974
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-30 Score=204.73 Aligned_cols=244 Identities=23% Similarity=0.338 Sum_probs=203.9
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCc
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFT 84 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~ 84 (268)
++..-++.+|++.|..+.|. +|+..+++++.|++++.||.++|+.++.+++|..-|.++.-..-|. ++.|++.|++
T Consensus 80 ceN~~~lkgHsgAVM~l~~~---~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 80 CENFWVLKGHSGAVMELHGM---RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred ccceeeeccccceeEeeeec---cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 44555566999999999998 4999999999999999999999999999999999999998555554 5678999999
Q ss_pred EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
+|+||+.....+.+++.+.+++++.|..++..+++|+-|+.|++||++..... ....+|.+.|+.+..++++..++ +-
T Consensus 157 ~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~ll-sn 234 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLL-SN 234 (338)
T ss_pred EEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccc-cc
Confidence 99999999999999999999999999999999999999999999999865543 44557889999999998887555 55
Q ss_pred eCCCeEEEEeCCC----CceEEeecCC-----CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCce-ee
Q 024372 165 TDSGGVRLWDARS----GKIVQTLETK-----SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTE-SA 233 (268)
Q Consensus 165 ~~d~~i~iwd~~~----~~~~~~~~~~-----~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~ 233 (268)
+-|+++++||.|- .++++.++.+ .....++|+|+++++.+ +.|+.+.+||....+.+..++.+.+.. ..
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 6779999999974 4567777643 23678899999999875 578999999998877777677666544 45
Q ss_pred EEcCCCCCEEEeccCCCeEEEE
Q 024372 234 SLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~i~~w 255 (268)
.|.| .-.++.+++.|++|++=
T Consensus 315 ~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 315 DFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred eecC-CCcEEEEeccCceeEee
Confidence 5555 68899999999999873
No 51
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.4e-29 Score=221.95 Aligned_cols=247 Identities=14% Similarity=0.196 Sum_probs=182.5
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE-------------EEeeCccCcEEEEEecC-CCcEEEEe
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-------------GTFEGHKGAVWSCCLDA-NALFSASG 79 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~-------------~~~~~h~~~V~~~~~~~-~~~~l~s~ 79 (268)
.|-..|+...+. +|+..+++++.+.....|+...+..+ ..+.+|++.|.+++|+| ++.+|++|
T Consensus 18 ~~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 18 RHFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred cceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 444555544443 47667777877777777765433222 24789999999999999 78899999
Q ss_pred eCCCcEEEEeCCCCC-------eeeee-ccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372 80 SADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (268)
Q Consensus 80 s~D~~v~iw~~~~~~-------~~~~~-~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~ 150 (268)
+.|++|++||+.++. ++..+ .|...|.+++|+|++ ++|++|+.|++|++||++++.. ...+..|...|.+
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~s 173 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITS 173 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEE
Confidence 999999999997643 22333 488899999999975 7999999999999999986543 3455567789999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEE-e----CCCeEEEEeCCCce-eee
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITT-A----DGSSVKFWDANHFG-LVK 222 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~-~----~~~~v~~wd~~~~~-~~~ 222 (268)
++|++++. ++++++.|++|+|||+++++.+.++..+. ....+.|.|++..+++ + .|+.|++||+++.. .+.
T Consensus 174 la~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 174 LEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99998765 56677788999999999999988876543 2456788888766543 3 36899999998754 344
Q ss_pred EEeCCC-CceeeEEcCCCCCEEEecc-CCCeEEEEECCCCcEEee
Q 024372 223 GYNMPC-NTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 223 ~~~~~~-~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~~g~~~~~ 265 (268)
...... ......+..+++.+|++|+ .|+.|++||+.+++++..
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 333322 2223333334688888877 599999999998887654
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=232.36 Aligned_cols=250 Identities=20% Similarity=0.310 Sum_probs=203.8
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
|+.-+..|.+++|+|..| +++++-..|.|++||-+-+.++..|..|.++|+.+.|+|++.+++||+.|-.|++|+..
T Consensus 5 fEskSsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 455677899999998555 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
+..+..++ .|-+.|+.+.||+.-.+++++|.|.+|++|+..++.. .....+|...|.|.+|.|... ++++++-|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptED-lIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTED-LIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccc-eEEEecccceE
Confidence 99887776 5999999999999999999999999999999876543 455667888999999887555 55566777999
Q ss_pred EEEeCCCCc---------------------------eE--EeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372 171 RLWDARSGK---------------------------IV--QTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG 219 (268)
Q Consensus 171 ~iwd~~~~~---------------------------~~--~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~ 219 (268)
|+||+..-+ ++ +.+++| ..|+-++|+|.--++++ ++|+.|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 999985211 11 223333 35899999999877766 478999999985432
Q ss_pred --eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 220 --LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 220 --~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
.+.+...+.+..++.++.+--+++++.|+|+.|+|||+.....+.++
T Consensus 240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 24455555555555555445788999999999999999877777765
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.4e-31 Score=206.94 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=180.4
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------------C------CeEEEeeCccCcEEEEEecC
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------G------DWIGTFEGHKGAVWSCCLDA 71 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------------~------~~~~~~~~h~~~V~~~~~~~ 71 (268)
..+..|..++++.+|+| ||.++|+||.|..|+|.|++. | -.+++|-.|.+.|..+.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 44568999999999985 999999999999999999871 1 25788889999999999999
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCeee---eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcc
Q 024372 72 NALFSASGSADFTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG 146 (268)
Q Consensus 72 ~~~~l~s~s~D~~v~iw~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~ 146 (268)
...+|+||+.|++|+++|......++ .+...++|++++|+|.|.+|+.|..-.++++||+++.+.-. .-...|.+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999986544333 33456789999999999999999999999999998654322 22346788
Q ss_pred cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec---CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeee
Q 024372 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK 222 (268)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~ 222 (268)
.|+++.|++.+ .+.++++.||.|||||--+++|+.++. ....|.++.|+.+|+|+.++ -|..|++|.+.++++++
T Consensus 263 ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 263 AITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred ceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999998866 466778899999999999999999885 23569999999999998765 58899999999999998
Q ss_pred EEeCC
Q 024372 223 GYNMP 227 (268)
Q Consensus 223 ~~~~~ 227 (268)
.|...
T Consensus 342 ~YtGA 346 (430)
T KOG0640|consen 342 EYTGA 346 (430)
T ss_pred EEecC
Confidence 88643
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.1e-31 Score=218.00 Aligned_cols=248 Identities=25% Similarity=0.351 Sum_probs=206.5
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
+...++|.+++|+|..|.. ..++ ..-.+++|+..+...++++.-.+..|+++.|-.||.++|.|...|.|+++|..+
T Consensus 23 ~ke~~~vssl~fsp~~P~d-~aVt--~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYD-FAVT--SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccCcceeEecCCCCCCc-eEEe--cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 3455689999999988864 2333 334678899888877777877889999999999999999999999999999666
Q ss_pred CCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 93 ~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
...++.+ .|+.++..+.|+| ++..+++|++|+.+++||+.+... ...+..|.+.|.|.+++|..++++++|+.||+|
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 4444444 5999999999999 556788899999999999987654 446778999999999999999999999999999
Q ss_pred EEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCcee-eeEE-eCCCCceeeEEcCCCCCEEEecc
Q 024372 171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL-VKGY-NMPCNTESASLEPKLGNIFIAGG 247 (268)
Q Consensus 171 ~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~gs 247 (268)
|+||+|+. ..+.++++..+|.++.+-|.|..++++.+..|++||+-.++. +... +++....++.+.. +++.|++||
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~s 257 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGS 257 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecc
Confidence 99999987 778899999999999999999999999999999999986543 3322 3455566777776 589999999
Q ss_pred CCCeEEEEECCCCcEEee
Q 024372 248 EDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 248 ~d~~i~~wd~~~g~~~~~ 265 (268)
-|+.|++||+.+-+.+..
T Consensus 258 LD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred cccceEEEEccceEEEEe
Confidence 999999999877777654
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.3e-30 Score=208.35 Aligned_cols=245 Identities=20% Similarity=0.354 Sum_probs=195.7
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-C--CcEEEEeeCCCcE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-N--ALFSASGSADFTA 85 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~--~~~l~s~s~D~~v 85 (268)
|+-+..|.+=|.++.-. +..+++|+.||++++||. .|+.+.++.||.++|.++++.- + ...++++|.|.++
T Consensus 98 pl~~~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccccccchhhhhhhccc-----CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 34445688888777553 468999999999999995 6899999999999999888742 2 2458999999999
Q ss_pred EEEeCCCCCeeee-----eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC------------------------CC
Q 024372 86 KLWDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DA 136 (268)
Q Consensus 86 ~iw~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~------------------------~~ 136 (268)
++|..+.+..... -.|+..|.+++..+++..+++|++|.++++|+.+.. +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 9999876654222 258899999999999999999999999999993210 11
Q ss_pred CCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDA 215 (268)
Q Consensus 137 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~ 215 (268)
+.....+|.++|..+.|++. ..+.+++.|.+|+.||+.++.++.++......+++..+|..++|+++ +|+.+|+||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 22345678899999999873 34556678899999999999999999888889999999999998875 6899999999
Q ss_pred CCc--ee-eeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372 216 NHF--GL-VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 216 ~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~ 261 (268)
|+. .. ...|..+.+ +.++.++|..-.+|++||.|+++++||+++-.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 875 22 244444555 45666777777889999999999999998655
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1e-30 Score=216.25 Aligned_cols=237 Identities=19% Similarity=0.307 Sum_probs=197.0
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~ 93 (268)
-...|.++.|. .||.+||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+.
T Consensus 67 Fk~~v~s~~fR---~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 67 FKDVVYSVDFR---SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred hccceeEEEee---cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 45678899998 499999999999999999966655677899999999999999865 67789999999999999988
Q ss_pred Ceeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372 94 DEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (268)
Q Consensus 94 ~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 171 (268)
.....+ .|++.|+|.+|+| ++.+++||++||+||+||++.......+ .+|..+|..+.+.|+++.+ ++++. +.+|
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~i-asAgG-n~vk 220 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLI-ASAGG-NSVK 220 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEE-EEcCC-CeEE
Confidence 864444 4999999999999 5679999999999999999865433333 4678899999999987654 45444 7999
Q ss_pred EEeCCCCceEE-ee-cCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC
Q 024372 172 LWDARSGKIVQ-TL-ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (268)
Q Consensus 172 iwd~~~~~~~~-~~-~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 248 (268)
+||+-+|..+- .+ +|+..|.|+.+..++..|.++ =|+.|++||+.+++.+..+.++.++.+++.+| +++.+++|-.
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGms 299 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGMS 299 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEecc
Confidence 99998765543 33 366779999999998777665 59999999999999999999999999999998 6888999999
Q ss_pred CCeEEEEECC
Q 024372 249 DMWVHVFDFH 258 (268)
Q Consensus 249 d~~i~~wd~~ 258 (268)
||.+.+=+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9977655443
No 57
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.8e-30 Score=200.70 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=200.2
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCCcEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAK 86 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~~v~ 86 (268)
.+.++.|.++|++++- +|.++|+||.|.+|+|||..+...++.+-.|.+.|.++.|.+... .|.+|+.||.|.
T Consensus 36 lF~~~aH~~sitavAV-----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV-----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEe-----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 4455799999999988 578999999999999999999999999999999999999987764 899999999999
Q ss_pred EEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 87 LWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 87 iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
+|+...-.+...+. |...|+.++.+|.+++-++.+.|+.+++||+-.++........+ .-+.+.|+|++.++++.+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~- 187 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSG- 187 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEe-
Confidence 99999888877774 88889999999999999999999999999986654322222222 334489999998776664
Q ss_pred CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeE-EcCCCCCEE
Q 024372 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SAS-LEPKLGNIF 243 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 243 (268)
. +.|-||.+.+...+..+.....+.++.|-..+.++++++++.|++||.....+...+..+.+.. .+. +..+.+.+|
T Consensus 188 ~-~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 188 R-NKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred c-cEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 3 6899999999888877766666888888888888888899999999998877777676655433 333 334468999
Q ss_pred EeccCCCeEEEEECCCC
Q 024372 244 IAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g 260 (268)
+++|.||.|++||+...
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999998754
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.8e-30 Score=196.35 Aligned_cols=247 Identities=22% Similarity=0.317 Sum_probs=204.8
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCcEEEEEecCC-CcEEEEeeCCCcEEEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW 88 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw 88 (268)
+.+|...|.+++|+. +|..|++|+.|+++++|+++..++... .++|.+.|-.++|+|. ...+++++.|++|++|
T Consensus 16 ~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 358999999999995 899999999999999999988866544 4689999999999865 4788999999999999
Q ss_pred eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 168 (268)
|...+++......+..-.-+.|+|+++.++.++.|..|...|.++.+....+ ...-.+..++|+.++..++++.+- |
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~Gl-G 169 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGL-G 169 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCC-c
Confidence 9999999998887666566889999999999999999999998765433222 223457778888666666766544 8
Q ss_pred eEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEe
Q 024372 169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIA 245 (268)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 245 (268)
.|.|......+.++.++.| ....|+.|+|+|+++++| .|-.+.+||++..-+++.+.... ++..+.|+. +|+||++
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS 248 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS 248 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence 9999999999999988854 568899999999999875 68899999998877777775433 456777777 6999999
Q ss_pred ccCCCeEEEEECCCCcEEee
Q 024372 246 GGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 246 gs~d~~i~~wd~~~g~~~~~ 265 (268)
||+|..|-+=++++|+.+..
T Consensus 249 aSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred cCccceEEeEecccCCeEEE
Confidence 99999999999999998764
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-29 Score=203.66 Aligned_cols=244 Identities=22% Similarity=0.340 Sum_probs=188.4
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE----EEeeCccCcEEEEEecCCCcEEEEeeCCC
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSADF 83 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~s~s~D~ 83 (268)
.-+.+.||+++|.+++|.-..+....+++|+.|.++++|..+.++.. ..-+||+..|-+++..+++..++|||+|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 34556799999999998654444557999999999999988877643 33459999999999999999999999999
Q ss_pred cEEEEeCCCCC-------------------------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372 84 TAKLWDALTGD-------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (268)
Q Consensus 84 ~v~iw~~~~~~-------------------------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (268)
+++||+..+.. +..++ .|.++|..|.|++ ...++++++|.+|+.||+.++...
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~ 294 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK 294 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence 99999932110 11122 4889999999998 568899999999999999987655
Q ss_pred CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc--e-EEeec-CCCCEEEEEECCCCcEE--EEeCCCeEE
Q 024372 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--I-VQTLE-TKSPVTSAEVSRDGRYI--TTADGSSVK 211 (268)
Q Consensus 138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~-~~~~~-~~~~v~~~~~s~~g~~l--~~~~~~~v~ 211 (268)
..... ....+++.+.+.. .++++|+.|..||+||.|++. . .++|. |++.|.++.++|...|. .++.|++++
T Consensus 295 ~~~~~--~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 295 STLTT--NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred eeeec--CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 44443 3478999998854 577777788999999999864 3 34444 55679999999987654 345799999
Q ss_pred EEeCCCce-eeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 212 FWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 212 ~wd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
+||+|... ++..+..+.. ..++.+. .+..+++||.|.+|+++.-
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEecc
Confidence 99999865 6666655533 3344443 5889999999999999864
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.7e-31 Score=207.80 Aligned_cols=244 Identities=24% Similarity=0.362 Sum_probs=204.0
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--------eCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
|..+-+-+..|+| ||+||++||.||-|.+|+..+|++.+.+ .-|.++|.+++|+.|..++|||+.||.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 4555666888984 9999999999999999999999765443 4578999999999999999999999999
Q ss_pred EEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372 86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (268)
++|.+.++++++.|. |...|.++.|+.|+..+.++++|.++|+--+.+++. ..++.+|...|+...|.+++.+++ +
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-s 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-S 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-E
Confidence 999999999999886 888999999999999999999999999998887754 456667888999999988776655 5
Q ss_pred eeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeCC----CCceeeE
Q 024372 164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMP----CNTESAS 234 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~~----~~~~~~~ 234 (268)
++.||+|++|+..+.+|+.+|+. ..+|+++..-|-. .++++-...+|.+-++.. ..++.+... .....++
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEE
Confidence 56679999999999999999874 3468888887754 577787788999998864 567777542 2355666
Q ss_pred EcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
.+| -|+++++.++|+.+|.+.+.+|+.-.
T Consensus 445 lSp-kGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 445 LSP-KGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ecC-CCcEEEEEccCcEEEEEEeecCceee
Confidence 777 59999999999999999999887633
No 61
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-28 Score=217.73 Aligned_cols=223 Identities=16% Similarity=0.282 Sum_probs=170.9
Q ss_pred EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCCCCCe--------eee-eccCCeE
Q 024372 36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE--------KHS-FEHKHIV 105 (268)
Q Consensus 36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~~~~~--------~~~-~~~~~~v 105 (268)
.|+.++.+++|+......+..+.+|.+.|.+++|+|+ +.+|+||+.|++|++||+.++.. ... ..|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 3667888999998777788899999999999999997 68999999999999999975421 122 2478899
Q ss_pred EEEEECCCCCE-EEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372 106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (268)
Q Consensus 106 ~~v~~~~~~~~-l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 184 (268)
.+++|+|++.. +++++.|+.|++||++++... .... +...+.+++|++++.. +++++.|+.|+|||+++++.+.++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-FQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEE
Confidence 99999998865 578999999999999876432 2232 4567999999987764 555567799999999999998888
Q ss_pred cCCC-CEE-----EEEECCCCcEEEE-eCC----CeEEEEeCCC-ceeeeEEeCCCC--ceeeEEcCCCCCEEEeccCCC
Q 024372 185 ETKS-PVT-----SAEVSRDGRYITT-ADG----SSVKFWDANH-FGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 185 ~~~~-~v~-----~~~~s~~g~~l~~-~~~----~~v~~wd~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~ 250 (268)
..|. .+. ...|++++.++++ +.+ +.|++||+++ .+++....+... .....+.++++.+|++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 7543 222 2335688877665 544 4799999986 456665554332 333345566789999999999
Q ss_pred eEEEEECCCCc
Q 024372 251 WVHVFDFHTGE 261 (268)
Q Consensus 251 ~i~~wd~~~g~ 261 (268)
.||+|++..+.
T Consensus 286 tIr~~e~~~~~ 296 (568)
T PTZ00420 286 NCRYYQHSLGS 296 (568)
T ss_pred eEEEEEccCCc
Confidence 99999997764
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.2e-30 Score=223.70 Aligned_cols=239 Identities=25% Similarity=0.394 Sum_probs=201.6
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
|...+.+..|+ + .++++++.|.++++|+..++..+.. +.||++.|+++++..-+.++++|+.|.++|+||+.++
T Consensus 207 ~~~~~~~~q~~----~-~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH----D-GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee----c-CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 56677788786 3 4899999999999999999998888 9999999999999887788999999999999999999
Q ss_pred Ceeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (268)
Q Consensus 94 ~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i 172 (268)
++...+. |.+.+.++... ...+++|+.|.++++|+++.+.. ......|.++|.++... ..++.+|+.|++|++
T Consensus 282 ~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKV 355 (537)
T ss_pred cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCceEEE
Confidence 9999987 88889888654 44778899999999999987653 34454589999999875 346667778899999
Q ss_pred EeCCCCceEEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCc-eeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372 173 WDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 173 wd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~ 250 (268)
||++++++++++.+| ..|.++.+.+....+.++-|++|++||+++. +++.++..+....... .. .+.++++++.|+
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-~~-~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-LL-RDNFLVSSSADG 433 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-cc-ccceeEeccccc
Confidence 999999999999865 5699998888755556677899999999998 8999998876654222 22 488999999999
Q ss_pred eEEEEECCCCcEEeec
Q 024372 251 WVHVFDFHTGEQIAIT 266 (268)
Q Consensus 251 ~i~~wd~~~g~~~~~~ 266 (268)
.|++||..+++.+.++
T Consensus 434 ~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTL 449 (537)
T ss_pred cEEEeecccCceeeee
Confidence 9999999999988775
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=202.11 Aligned_cols=243 Identities=18% Similarity=0.281 Sum_probs=200.9
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.|.||.+.|++...+. +....|++++|.+.++||.-+|..+.+|. |+..|.+|+|+.|..+|+||+.++.+|++|+
T Consensus 54 tfeghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred eeeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 4689999999988873 56688999999999999999999888886 9999999999999999999999999999999
Q ss_pred CCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372 91 LTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (268)
Q Consensus 91 ~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 168 (268)
+..+- ...-.|+..|+.+-|....+++++...|+++|+||.+++....... ...+++++.+++++. +++.. +.+
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~-ilTia-~gs 205 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGR-ILTIA-YGS 205 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCC-EEEEe-cCc
Confidence 76542 2233588899999998888889999999999999998875443333 345788888888775 44443 447
Q ss_pred eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe-CC-CCceeeEEcCCCCCEEEe
Q 024372 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN-MP-CNTESASLEPKLGNIFIA 245 (268)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 245 (268)
.|++||..+...++.++....|.+..++|+..++++ ++|..++-||..+++.+-.|+ .+ ..+-++.++| +|...++
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAs 284 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYAS 284 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeec
Confidence 999999999999999998889999999999766655 578999999999988877763 33 3445667777 7999999
Q ss_pred ccCCCeEEEEECCCCcE
Q 024372 246 GGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 246 gs~d~~i~~wd~~~g~~ 262 (268)
||+||+|++|-+..++.
T Consensus 285 GSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEEEEecCCCc
Confidence 99999999998865553
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.8e-31 Score=213.60 Aligned_cols=255 Identities=20% Similarity=0.283 Sum_probs=208.8
Q ss_pred cceeeecEEe--eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372 3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (268)
Q Consensus 3 ~~~~~~~~~~--~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s 80 (268)
.|++++|++. .||.++|.+++-+|..+ ..+|+|+.||.|+|||..+.+++.+|.+|.+.|..+++.. ..++|+|
T Consensus 51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg 126 (433)
T KOG0268|consen 51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG 126 (433)
T ss_pred HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence 3678888876 59999999999998543 4799999999999999999999999999999999999987 4568999
Q ss_pred CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (268)
.|++|+.|.++. ++.+++.....+..+.-+..+..++|++. .|.+||..... +.+.+....+.+.++.|+|-...+
T Consensus 127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred CCcceeeeeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeEEecCCCcchh
Confidence 999999999865 56677766667777877777888998874 68999986543 445555556789999999988889
Q ss_pred EEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EEEEeCCCeEEEEeCCCc-eeeeEEeCCC-CceeeEEcC
Q 024372 161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHF-GLVKGYNMPC-NTESASLEP 237 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~v~~wd~~~~-~~~~~~~~~~-~~~~~~~~~ 237 (268)
+++|..|+.|.|+|+|++.+++.+-.....+.|+|+|.+- |+++.+|..+..+|++.. +++..|.-+. ....++++|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 9999888999999999999999887777789999999764 344557889999999875 3444454332 345667777
Q ss_pred CCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 238 KLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
.|+-|++||.|..|++|.+..|.-..+|
T Consensus 283 -tG~EfvsgsyDksIRIf~~~~~~SRdiY 310 (433)
T KOG0268|consen 283 -TGQEFVSGSYDKSIRIFPVNHGHSRDIY 310 (433)
T ss_pred -CcchhccccccceEEEeecCCCcchhhh
Confidence 7999999999999999999877766553
No 65
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-28 Score=217.94 Aligned_cols=227 Identities=17% Similarity=0.219 Sum_probs=169.1
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--------eEEEeeCccCcEEEEEecCCCcE-EEEe
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--------WIGTFEGHKGAVWSCCLDANALF-SASG 79 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--------~~~~~~~h~~~V~~~~~~~~~~~-l~s~ 79 (268)
...+.+|.++|.+++|+|. ++++||+|+.|++|++|++.++. .+..+.+|...|.+++|+|++.. ++|+
T Consensus 67 v~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred EEEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 3456799999999999972 37899999999999999987642 34578899999999999998865 5799
Q ss_pred eCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE-----EEe
Q 024372 80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-----AWL 154 (268)
Q Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~-----~~~ 154 (268)
+.|++|++||+.++.....+.+...|.+++|+|+|.+|++++.|+.|++||++++... ..+..|.+.+... .++
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEc
Confidence 9999999999999988777778888999999999999999999999999999876543 4455566654332 233
Q ss_pred CCCCcEEEEeeCC---CeEEEEeCCC-CceEEeecCCC--C-EEEEEECCCCcEEEEe-CCCeEEEEeCCCcee--eeEE
Q 024372 155 HSDQTILSSCTDS---GGVRLWDARS-GKIVQTLETKS--P-VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL--VKGY 224 (268)
Q Consensus 155 ~~~~~~~~~~~~d---~~i~iwd~~~-~~~~~~~~~~~--~-v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~--~~~~ 224 (268)
+++..++++|.++ ++|+|||++. ++++..+.... . +......++|.+++++ .|+.|++|++..... +..|
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence 6666667666553 4899999995 56676655432 2 2233335567776654 789999999976432 2333
Q ss_pred eCCCCceeeEEcCC
Q 024372 225 NMPCNTESASLEPK 238 (268)
Q Consensus 225 ~~~~~~~~~~~~~~ 238 (268)
........+++.|.
T Consensus 304 ~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 304 KSCSPFRSFGFLPK 317 (568)
T ss_pred ccCCCccceEEccc
Confidence 33333445666653
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.5e-30 Score=223.99 Aligned_cols=240 Identities=20% Similarity=0.297 Sum_probs=191.6
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
|..|.+||++++|+| .+-++++|+.|.+|+||+..+.+++.+|.||-+-|+++.|++.-..++|+|.|.+||||+..
T Consensus 47 FdeHdGpVRgv~FH~---~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHP---TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred hhccCCccceeeecC---CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 468999999999997 55599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC---CCC-------------------------CCeEec
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---PDA-------------------------PPREVG 142 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~---~~~-------------------------~~~~~~ 142 (268)
+++++..+. |.+.|.|.+|+|....++++|-|.+||+||+.. ... ......
T Consensus 124 sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 999988875 999999999999888999999999999999731 000 001123
Q ss_pred CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc
Q 024372 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF 218 (268)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~ 218 (268)
+|.-.|+.++|.|.-+ ++++|+||+.|++|-....+. +-+.. |...|.++.|+|...++.+ |+|+.||+||+...
T Consensus 204 GHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 4566788888877554 677888999999998764443 22333 4567999999999887765 68999999999998
Q ss_pred eeeeEEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 219 GLVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 219 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
..+++|.. +...+.++.+| ...+|++|=..| +.||..
T Consensus 283 t~v~tfrrendRFW~laahP-~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 283 TSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred cceeeeeccCCeEEEEEecC-CcceeeeecCCc-eEEEEE
Confidence 88888865 33456666666 366555543333 445544
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=211.20 Aligned_cols=248 Identities=20% Similarity=0.277 Sum_probs=206.1
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
..++.|.+.|..+.|-+ +...|++|+.|..|++|++...+ ++.+|.|-.+.|..+.|.+++.++.+++.|+.+++
T Consensus 169 ~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 34578999999999985 44589999999999999887665 78899999999999999999999999999999999
Q ss_pred EeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (268)
Q Consensus 88 w~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 166 (268)
|++.......++. |++.|.++.|......+++|+.|.+|+.||+.........+. ...+..|.-. ...+++|-.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec---ceeeeeccc
Confidence 9999988877775 999999999988776699999999999999976443322222 1223333322 345667777
Q ss_pred CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCC-----CCceeeEEcCCCC
Q 024372 167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMP-----CNTESASLEPKLG 240 (268)
Q Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 240 (268)
|++||+||.|+..+....+.++.+.++..+++|.-+. ++.|.++.+.|+++++....|... +.....+|+| ++
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~ 399 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DG 399 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CC
Confidence 8999999999999999999989999999999997765 567899999999999888877653 3455677777 79
Q ss_pred CEEEeccCCCeEEEEECCCCcEEeec
Q 024372 241 NIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+|+++||.||.|++|++.+|+...++
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEe
Confidence 99999999999999999999877664
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-28 Score=210.17 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=206.8
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.-+++.|+++.|++ +|++||.|..+|++.|||..+.+.+.++.+ |.+.|-+++|. +..+.+|+.|+.|..+|+.
T Consensus 214 ~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 214 SFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred ecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 34588999999985 999999999999999999999999999998 99999999998 5677899999999999998
Q ss_pred CCCeeee-e-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe--eCC
Q 024372 92 TGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDS 167 (268)
Q Consensus 92 ~~~~~~~-~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d 167 (268)
..+.... + .|...|-.+.|+++++.+|+|+.|+.+.+||.... .+...+..|.+.|..++|+|-...+||+| +.|
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 7765443 3 38889999999999999999999999999998544 34566678899999999999988888875 567
Q ss_pred CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe---CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEE
Q 024372 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF 243 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (268)
+.|++||+.+++.+..+.....|.++.|++..+-++++ .+..|.||+.-..+.+..+..+.. +..++++| +|+.+
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i 446 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETI 446 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEE
Confidence 89999999999999999988999999999998766554 357899999988888777776654 44556666 79999
Q ss_pred EeccCCCeEEEEECCC
Q 024372 244 IAGGEDMWVHVFDFHT 259 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~ 259 (268)
++|+.|.++++|++-.
T Consensus 447 ~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFD 462 (484)
T ss_pred EEecccCcEEeccccC
Confidence 9999999999999864
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.9e-29 Score=202.53 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=201.5
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
..+.||+..|+.+.|+| +...+++++.|..|+||.+-........+.|.++|..+..+|.+.||++++.|++.-+.|
T Consensus 255 ~~~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 34569999999999996 666899999999999999877777777889999999999999999999999999999999
Q ss_pred CCCCCeeeeeccCC---eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372 90 ALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (268)
Q Consensus 90 ~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 166 (268)
+.++.+.....+.. .+++.+|||||.+|.+|..|+.+++||+.++. ....+..|.++|..++|+.+|. .+++..+
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~ad 409 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAAD 409 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEec
Confidence 99999888777642 47899999999999999999999999997765 4456677999999999976654 5566677
Q ss_pred CCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcEEEEe-CCCeEEEEeC--CCceeeeEEeCCCCceeeEEcCCCCC
Q 024372 167 SGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTA-DGSSVKFWDA--NHFGLVKGYNMPCNTESASLEPKLGN 241 (268)
Q Consensus 167 d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~-~~~~v~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (268)
|+.|++||+|+-+.++++... .+++++.|.+.|.+++.+ .+=.|++++. ..+.+++.+.-+.+......+....+
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence 789999999999988887643 369999999999998765 4445556653 35677777776665555555655688
Q ss_pred EEEeccCCCeEEEEEC
Q 024372 242 IFIAGGEDMWVHVFDF 257 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~ 257 (268)
+++++|.|...+++.+
T Consensus 490 ~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 YLASTSMDAILRLYAL 505 (506)
T ss_pred EEeeccchhheEEeec
Confidence 9999999999888753
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.7e-28 Score=201.69 Aligned_cols=251 Identities=20% Similarity=0.304 Sum_probs=183.6
Q ss_pred eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEE------
Q 024372 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFS------ 76 (268)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l------ 76 (268)
..+...++..|..+++-..|+| .|.|+|+|-..|++||||....+ +..+|+--.++|..++|+.+++++
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred CccceeeeccccceeEEEEeCC---CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 3444555668999999999996 79999999999999999865422 223333334455555555555444
Q ss_pred ---------------------------------------EEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCE
Q 024372 77 ---------------------------------------ASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL 116 (268)
Q Consensus 77 ---------------------------------------~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~ 116 (268)
+|||.|++|.+|+=-..+-..++ .|..+|+++.|+|||..
T Consensus 125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~ 204 (603)
T KOG0318|consen 125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR 204 (603)
T ss_pred ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe
Confidence 44444444444432211112222 37789999999999999
Q ss_pred EEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC----
Q 024372 117 LLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---- 189 (268)
Q Consensus 117 l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---- 189 (268)
+++++.|+++.+||-.+++. .-++. .|++.|..++|+|++..+++ ++.|.++||||+.+.++++++.....
T Consensus 205 Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T-~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLT-VSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred EEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEE-ecCCceEEEEEeeccceEEEeecCCchhce
Confidence 99999999999999766553 23333 78999999999998877665 45679999999999999999875433
Q ss_pred EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
-..+.|. .+.++..+-+|.|.+++......++.+..+.. +.++..++ ++++|++|+.||.|--||..+|..
T Consensus 283 qvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 283 QVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred EEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccc
Confidence 2344555 66677778889999999998888887776554 55666666 689999999999999999876654
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=204.70 Aligned_cols=242 Identities=23% Similarity=0.292 Sum_probs=204.1
Q ss_pred eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
|++..-.|.|-.++|++++|.+ ++.++++++.|+++++|++..+++..+|.||++.|.++.|.......++|+.|.+
T Consensus 208 k~~~~~tLaGs~g~it~~d~d~---~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 208 KSELISTLAGSLGNITSIDFDS---DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred hhhhhhhhhccCCCcceeeecC---CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch
Confidence 3444556678888999999984 8899999999999999999999999999999999999999887777899999999
Q ss_pred EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
+|+||+....+..++-..+.+..+..+ ...+++|.+|++||.||.+++... .... -.+.|+++..++++-.+++ +
T Consensus 285 iK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~-~sv~-~gg~vtSl~ls~~g~~lLs-s 359 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKT-RSVP-LGGRVTSLDLSMDGLELLS-S 359 (459)
T ss_pred hhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCcee-eEee-cCcceeeEeeccCCeEEee-e
Confidence 999999998888888777778877776 557899999999999999876533 3332 3458999998887766555 4
Q ss_pred eCCCeEEEEeCCCCceEEeecC-----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC---CceeeEE
Q 024372 165 TDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC---NTESASL 235 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~ 235 (268)
+.|.++++.|+|+.+..+.+.. ...++.+.|||++.|+++| .|+.|+||++.++++.+....+. .+.++.|
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 7779999999999998887753 3458899999999999865 68999999999998887776532 3667788
Q ss_pred cCCCCCEEEeccCCCeEEEE
Q 024372 236 EPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 236 ~~~~~~~~~~gs~d~~i~~w 255 (268)
.+ .|+.+++++.++.+.+|
T Consensus 440 ~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 440 NP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred cC-CCchhhcccCCcceEec
Confidence 87 79999999999999999
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=213.46 Aligned_cols=210 Identities=21% Similarity=0.366 Sum_probs=171.0
Q ss_pred CeEEEeeCccCcEEEEEecC-CCcEEEEeeCCCcEEEEeCCC-CCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEE
Q 024372 52 DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI 128 (268)
Q Consensus 52 ~~~~~~~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~iw~~~~-~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~ 128 (268)
+.+.++.||+..|.++.|.| .+.+|+|++.|+.|+||++.. +.+++++. |..+|+.++|++++..+.++++|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788999999999999998 678889999999999999987 77888875 8899999999999999999999999999
Q ss_pred EECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeC
Q 024372 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TAD 206 (268)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~ 206 (268)
||++++....+.. ....++|+.|.|++++++++|..|+.|+.||+|+++.++.+..+ +.++.+.|-++|+.++ +++
T Consensus 285 wDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999886544333 34467899999999898888888999999999999999988754 6799999999997765 567
Q ss_pred CCeEEEEeCCCceeeeE--------------------------------EeC-----------------CCCceeeEEcC
Q 024372 207 GSSVKFWDANHFGLVKG--------------------------------YNM-----------------PCNTESASLEP 237 (268)
Q Consensus 207 ~~~v~~wd~~~~~~~~~--------------------------------~~~-----------------~~~~~~~~~~~ 237 (268)
++.+++|+.+....++. |.. +.-.+.+.++|
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 89999999863322110 000 00112345566
Q ss_pred CCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 238 KLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
+|++|++|..||.+.+||.++-+++.
T Consensus 443 -DG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 443 -DGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred -CCCeEEeecCCccEEEeechhhhhhh
Confidence 79999999999999999998766543
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.6e-27 Score=191.15 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=199.1
Q ss_pred eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
+.+..+.||...|+++.|+ -||.+||||..+|.++||...++.....+-.--+.+.=+.|+|...+|+.|+.||.+-
T Consensus 97 e~~~eltgHKDSVt~~~Fs---hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFS---HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred cceeEecCCCCceEEEEEc---cCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 4566778999999999998 4999999999999999999999988877765555666688999999999999999999
Q ss_pred EEeCCC-CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC---------------------C
Q 024372 87 LWDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---------------------S 144 (268)
Q Consensus 87 iw~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~---------------------~ 144 (268)
+|.+.. +.+.....|..++++-.|.|+|+.++++..|++|++||+.++......... .
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 999987 444445568999999999999999999999999999998765422211100 0
Q ss_pred ----------cc-------------------cEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEE
Q 024372 145 ----------SG-------------------SIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193 (268)
Q Consensus 145 ----------~~-------------------~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (268)
.+ .+.++.+.|... .+++.|+-||+|.|||+.+.+..+..++..+|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 00 011222222111 35777788899999999998888888888889999
Q ss_pred EECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 194 EVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 194 ~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.|-++..++++..++.||.||.|++.++.+|..+.. +..+++.| +.++++++|.|...+||++.
T Consensus 334 ~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999955556667899999999999999999988764 55667777 69999999999999999874
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=193.41 Aligned_cols=250 Identities=20% Similarity=0.337 Sum_probs=199.1
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw 88 (268)
...+.||.+.|+.++-... ...+.++|.|.+.+||.+++|+++.++.||.+.|.++.|++.+.+++++|.|++.-||
T Consensus 141 vre~~GHkDGiW~Vaa~~t---qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADST---QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcC---CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 3445799999999987653 3489999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC----CC------------------------------------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEE
Q 024372 89 DALT----GD------------------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR 127 (268)
Q Consensus 89 ~~~~----~~------------------------------------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~ 127 (268)
...- .+ ++..+ .|...|.++.|-..++.++++++|++..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 8310 00 01111 2566777888888899999999999999
Q ss_pred EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCcEEEEe
Q 024372 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITTA 205 (268)
Q Consensus 128 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~~l~~~ 205 (268)
+||+++++. .+...+|..+.+.++-. +.+.++++++.|-+.|+||.|.. ..+..|++| ..|.++.|..+.+.+.++
T Consensus 298 lwDVEtge~-v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgS 375 (481)
T KOG0300|consen 298 LWDVETGEV-VNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGS 375 (481)
T ss_pred eeeeccCce-eccccCcchhccccccC-CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecC
Confidence 999998764 45556677777776654 45667888889999999999843 235567765 459999999999999999
Q ss_pred CCCeEEEEeCCCc-eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 206 DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 206 ~~~~v~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
+|++|++||+++. .++.++...+....+..+. .+..++.--.++.|++||+ +|+.++.
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaR 434 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLAR 434 (481)
T ss_pred CCceEEEeeeccccCcceeeecCCccceeEeec-CCceEEeccCCceEEEEec-CCCcccc
Confidence 9999999999986 4567777766666666665 3557777788999999998 4665554
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=198.88 Aligned_cols=246 Identities=19% Similarity=0.282 Sum_probs=195.0
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
+.--..+.||..+|.-+.|+| |-+||++++.|..+++||+.+|++...+. +|...+.+|+|-||+..+++|+.|++
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSP---DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~ 335 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSP---DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT 335 (519)
T ss_pred eeeeeeeecccCceEEEEECC---CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc
Confidence 333445679999999999996 77899999999999999999999887775 45678999999999999999999999
Q ss_pred EEEEeCCCCCeeeeec--cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 85 AKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
+..||+..+. ...++ ....|.+++..+||+.+++.+.|..|++|+.++.. -........++++++.+.++. ++.
T Consensus 336 i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~lise~~~its~~iS~d~k-~~L 411 (519)
T KOG0293|consen 336 IIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRGLISEEQPITSFSISKDGK-LAL 411 (519)
T ss_pred EEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhccccccCceeEEEEcCCCc-EEE
Confidence 9999986543 33332 12358899999999999999999999999976432 121223345899999877665 555
Q ss_pred EeeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECC-CCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEc
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE 236 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~-~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~ 236 (268)
..-.+.++++||++....++.+.++. .+..-+|-. +.+|+++| +|+.|+||+.++++++.....+.. +..+++.
T Consensus 412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 55667999999999777777776542 244555554 45788775 689999999999999999988765 4567788
Q ss_pred CCCCCEEEeccCCCeEEEEECC
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
|.+.++||+||.|++||+|-..
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCC
Confidence 8889999999999999999754
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.9e-29 Score=190.48 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=182.6
Q ss_pred CCcceeeecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEE
Q 024372 1 MDKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSAS 78 (268)
Q Consensus 1 ~~~~~~~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s 78 (268)
||+.+-++|+.. ..|..+|.++.|++. .++.++++|.|++|++|+..-+.-+.+|.||...|+...|+|.. ..+++
T Consensus 88 ~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 88 FDLTMPSKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred eccCCCCcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 577777888766 479999999999984 67888999999999999999999999999999999999999864 68899
Q ss_pred eeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372 79 GSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (268)
+|.|+++++||+........++ |...+.++.|+. +.++|+||+-|+.||.||++.-+.+..++..|.-.|..+.|+|.
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 9999999999997655544454 777999999988 78899999999999999998877777888889999999999999
Q ss_pred CCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC-EEEEEECCC-CcEEE-EeCCCeEEEEeC
Q 024372 157 DQTILSSCTDSGGVRLWDARSG-KIVQTLETKSP-VTSAEVSRD-GRYIT-TADGSSVKFWDA 215 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-v~~~~~s~~-g~~l~-~~~~~~v~~wd~ 215 (268)
...++++++.|=++||||...+ .++.+..+|.+ +..+.|++- +.+++ ++-|+.+.+|+-
T Consensus 246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9899999999999999999754 45667776655 788999875 44555 466999999983
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=186.90 Aligned_cols=233 Identities=21% Similarity=0.304 Sum_probs=169.5
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CCeEE-EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~~~~-~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.-++.|.+|+|+|. ...+++++|.|++||+|+++. |.++. ....|.++|++++|+.+|..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~--~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ--ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccc--cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 45778999999993 456888999999999999987 45443 234689999999999999999999999999999999
Q ss_pred CCCeeeeeccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecC--------------------------
Q 024372 92 TGDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGN-------------------------- 143 (268)
Q Consensus 92 ~~~~~~~~~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-------------------------- 143 (268)
+++......|..+|+++.|-+.. .+|+||++|+++|.||++...........
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 99988888899999999986644 49999999999999998754321111000
Q ss_pred --------------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE--eecCC----------CCEEEEEECC
Q 024372 144 --------------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETK----------SPVTSAEVSR 197 (268)
Q Consensus 144 --------------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~----------~~v~~~~~s~ 197 (268)
.+--+.|++.+++.+.+++++-+ |.+-|-.+..+.... +|+.| ..|++++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 01124566656555555554443 777776665542211 12111 2478999999
Q ss_pred C-CcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec-cCC
Q 024372 198 D-GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG-GED 249 (268)
Q Consensus 198 ~-g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~d 249 (268)
. |.++..|+||+..+||.+....++++.....++.++-+..+|++|+.+ |.|
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 7 556667899999999998877788776544444444444479999865 556
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=206.72 Aligned_cols=243 Identities=23% Similarity=0.360 Sum_probs=196.8
Q ss_pred ecCCCee---eEEEecCCCCCcEEEEEeCCCCeEEeeCCC--CC----eEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 14 GHSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGET--GD----WIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 14 ~h~~~v~---~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~~----~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
.|...|. ++..++ |.++||++|++||.|++|+... ++ ++.+++.|.+.|..+....++..+.|+|.|-+
T Consensus 19 qn~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence 4666666 565554 7888999999999999997754 22 57888999999999999889988999999999
Q ss_pred EEEEeCCCCC--eeeee-ccCCeEEEEEE-CCCCCEEEEeeCCCeEEEEECCCCCC---------CCeEec-CCcccEEE
Q 024372 85 AKLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA---------PPREVG-NSSGSIRT 150 (268)
Q Consensus 85 v~iw~~~~~~--~~~~~-~~~~~v~~v~~-~~~~~~l~s~~~d~~i~~~d~~~~~~---------~~~~~~-~~~~~v~~ 150 (268)
|++|+..... +..++ .|.+.|.|+++ -++..++|+|+.|+.|++||++++.. ...... ++..++++
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 9999998764 44444 49999999999 78889999999999999999986521 111122 56778999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCC
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPC 228 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~ 228 (268)
++.++.+ .++++|+-.+-|++||.++++.+-.+.+| ..|..+-+++||+.++ +++|++||+||++..+++.+|..+.
T Consensus 177 LA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 177 LAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred eecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 9977655 56777777799999999999887777655 4599999999997765 5689999999999999999998765
Q ss_pred C-ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 229 N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
. ..+....+ +=+.+++|+.|+.|+.=|+++.
T Consensus 256 e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 256 EGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence 4 45555554 5678999999999999988773
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=193.05 Aligned_cols=235 Identities=21% Similarity=0.302 Sum_probs=198.0
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 96 (268)
..++++...|. ...+++|+.|+++.++|..+++.+.+|.||.-.|..+.++++....++++.|..|++|........
T Consensus 220 pgi~ald~~~s---~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPS---SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCC---CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 46777777653 357899999999999999999999999999999999999999999999999999999998665544
Q ss_pred e-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372 97 H-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (268)
Q Consensus 97 ~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd 174 (268)
. ...|..+|+.+..+|.+.+|++++.|+++-..|++++........ ...-.+++.+|.| ++.++.+|..|+.|+|||
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEE
Confidence 4 335899999999999999999999999999999987764433322 2334578888765 567899999999999999
Q ss_pred CCCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC--ceeeEEcCCCCCEEEeccCCC
Q 024372 175 ARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 175 ~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs~d~ 250 (268)
+.++..+..|.. .++|..++|+.+|-+++++ +|+.|++||+|+.+..++|..+.. ..+.++.. .|.+++++|.|-
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l 454 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDL 454 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeeccee
Confidence 999999988875 4679999999999998875 567799999999999999988664 66777776 799999999997
Q ss_pred eEEEEE
Q 024372 251 WVHVFD 256 (268)
Q Consensus 251 ~i~~wd 256 (268)
.||+++
T Consensus 455 ~Vy~~~ 460 (506)
T KOG0289|consen 455 QVYICK 460 (506)
T ss_pred EEEEEe
Confidence 777776
No 80
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=180.83 Aligned_cols=236 Identities=19% Similarity=0.307 Sum_probs=184.3
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
...||-.+|.+++-+ .|...+++|+.|+.+.+||+++|+.++.|++|.++|.+++|..+...++|||.|.++|+||+
T Consensus 54 tYsghG~EVlD~~~s---~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALS---SDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDC 130 (307)
T ss_pred eecCCCceeeecccc---ccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEc
Confidence 346899999998876 47789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 91 LTGD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 91 ~~~~--~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
.... +++.+. ..+.|.++..+ +..+++|+.||++|.||++.+....-.+ ..+|+++.+++++...++++ -|
T Consensus 131 RS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~-l~ 204 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASS-LD 204 (307)
T ss_pred ccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEee-cc
Confidence 7643 444443 45677777765 4578999999999999998765433333 34899999999887666655 56
Q ss_pred CeEEEEeCCCCceEEeecCCCC---EEEEEECCCCcEE-EEeCCCeEEEEeCCCceeeeEEeCCCCc--eeeEEcCCCCC
Q 024372 168 GGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLGN 241 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~---v~~~~~s~~g~~l-~~~~~~~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (268)
+++++.|-.+|+.++.+.++.. -..++++.....+ .+++|+.|.+||+.....+..+..+..+ ..+.+.|...+
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 9999999999999988875432 2344555544444 4568999999999998888888776654 46667776566
Q ss_pred EEEeccCCCeEEEEEC
Q 024372 242 IFIAGGEDMWVHVFDF 257 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~ 257 (268)
++++++.- ++.|.-
T Consensus 285 f~~A~~~~--~~~~~~ 298 (307)
T KOG0316|consen 285 FITATGHG--DLFWYQ 298 (307)
T ss_pred eeEecCCc--eeceee
Confidence 55554433 556653
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.3e-27 Score=203.64 Aligned_cols=233 Identities=24% Similarity=0.368 Sum_probs=188.0
Q ss_pred EeeecCCCeee-EEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 11 VCHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 11 ~~~~h~~~v~~-~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.+.+|.+.|.. ++|.+ + ++-.|+.|+.|.++.+|.....+.+++|++|+..|.+++...++. ++|||+|.++++|.
T Consensus 52 ~~~~~~g~i~~~i~y~e-~-~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAE-S-DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred ecccCcceeeccceecc-c-cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence 35678888876 88876 3 555789999999999999999999999999999999998877777 88999999999998
Q ss_pred CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
....... ...|+..|.++..-|.. .++||+.|++||+|.- ....+.+..|.+.|..++..++.. +++|+.||.
T Consensus 129 ~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~ 201 (745)
T KOG0301|consen 129 IGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGS 201 (745)
T ss_pred chhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCce
Confidence 7432222 33599999999988877 7889999999999974 345667778999999999987653 446777899
Q ss_pred EEEEeCCCCceEEeecC-CCCEEEEEE-CCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEec
Q 024372 170 VRLWDARSGKIVQTLET-KSPVTSAEV-SRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAG 246 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~-~~~v~~~~~-s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 246 (268)
|++||+ +|+++..+.. ..-+.++.. .+++.++.+++|+++|+|+.. ++.+.+.+|. .+++....+ .|+ +++|
T Consensus 202 Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg 276 (745)
T KOG0301|consen 202 IRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVG 276 (745)
T ss_pred EEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEe
Confidence 999999 6888877764 455999994 455666677899999999987 7888888876 455555554 355 8899
Q ss_pred cCCCeEEEEECC
Q 024372 247 GEDMWVHVFDFH 258 (268)
Q Consensus 247 s~d~~i~~wd~~ 258 (268)
+.||.||+|-..
T Consensus 277 ~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 277 GSDGRVRVFTVD 288 (745)
T ss_pred ccCceEEEEEec
Confidence 999999999764
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=205.42 Aligned_cols=223 Identities=17% Similarity=0.302 Sum_probs=176.1
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-----CC--e------eee
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-----GD--E------KHS 98 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-----~~--~------~~~ 98 (268)
+++++|...|.+.++|.....++.++++|.+.+++++.+||+..++|||.|++|++||..- +. . .++
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 3444444444444444444444555678999999999999999999999999999999631 11 1 134
Q ss_pred eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC
Q 024372 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (268)
Q Consensus 99 ~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 178 (268)
++.++.|.|+.+|||+++|+.+--|+++++|-+++-+.. -...+|.=||.|+..+|+. .++++|+.|+.|+||-+.=|
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee-eeecccccceeEEeccCCc-CeEEeccCCCceEEeccccc
Confidence 455678999999999999999999999999988753322 2345788899999998865 57778889999999999999
Q ss_pred ceEEeecC-CCCEEEEEECCCCcE-EEEeCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372 179 KIVQTLET-KSPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 179 ~~~~~~~~-~~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~w 255 (268)
.|-+.+-. ...|.++.|-|...+ +++|-|+.|+.||-+++++++.+..+. ...+.+..| .|++++++|.|..|++|
T Consensus 583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEee
Confidence 99887654 456899999998655 456789999999999999998887654 566777777 69999999999999999
Q ss_pred EC
Q 024372 256 DF 257 (268)
Q Consensus 256 d~ 257 (268)
..
T Consensus 662 E~ 663 (888)
T KOG0306|consen 662 ER 663 (888)
T ss_pred ec
Confidence 85
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=7.5e-27 Score=191.87 Aligned_cols=243 Identities=21% Similarity=0.263 Sum_probs=191.6
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----e------EEEeeCccCcEEEEEecCCC-cEEEEeeCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----W------IGTFEGHKGAVWSCCLDANA-LFSASGSAD 82 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~------~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D 82 (268)
.|.+.|+.+.+.|..| +.+|+.+..+.+.|||..+-. . -.+|.||+..=+.++|++.. ..|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 6999999999999755 589999999999999876531 1 12788999877889998765 568999999
Q ss_pred CcEEEEeCCCCCe-------eeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCC-CCCCeEecCCcccEEEEE
Q 024372 83 FTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVA 152 (268)
Q Consensus 83 ~~v~iw~~~~~~~-------~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~v~~~~ 152 (268)
++|.+||+..... ...+ .|...|..++|++ +..+|++++.|+.+.+||+++. .........|.+++.|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999975443 1122 4888999999999 6678999999999999999862 222334456889999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCc-EEEE-eCCCeEEEEeCCCceee-------
Q 024372 153 WLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGLV------- 221 (268)
Q Consensus 153 ~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~-~l~~-~~~~~v~~wd~~~~~~~------- 221 (268)
|+|-+.+++++|+.|++|.+||+|.- +++++++.+ ..|.++.|+|+.. .+++ +.|+.+.+||+......
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 99999999999999999999999985 467888754 5699999999864 4554 57999999999643222
Q ss_pred -------eEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 222 -------KGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 222 -------~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
-.+..+. .+..+.+.|...-.++++++|..+.||.+.
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2222222 345667778777788889999999999975
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=189.58 Aligned_cols=240 Identities=16% Similarity=0.224 Sum_probs=204.1
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.-|..+|.++.|+ .|..+||+|+.||+|++|.+++|.+++.|. .|+..|.+++|+.|+..++|+|.|.++|+--+.
T Consensus 260 MMmd~aVlci~FS---RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 260 MMMDDAVLCISFS---RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred eecccceEEEeec---ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 3478899999998 588899999999999999999999999996 899999999999999999999999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
.+++...+. |.+.|+...|.++|..+++++.|+++++|+..+.+...... .....+|+.+...|.++.-++.|...++
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt 416 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT 416 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe
Confidence 999988875 88999999999999999999999999999987766543322 2345678888888988877888888899
Q ss_pred EEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEE
Q 024372 170 VRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (268)
|.|-++. |+.++.+.. .+...+++++|-|.++-+ ++|+.++.|....+++-++...+..-.....+.+-...++
T Consensus 417 v~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 417 VYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred EEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 9999886 788888753 245778899999999876 6789999999999888888877665433333443577889
Q ss_pred eccCCCeEEEEE
Q 024372 245 AGGEDMWVHVFD 256 (268)
Q Consensus 245 ~gs~d~~i~~wd 256 (268)
+-++|+.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999995
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=188.90 Aligned_cols=245 Identities=17% Similarity=0.278 Sum_probs=199.6
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE----EE---e-----------eCccCcEEEEEecC
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT---F-----------EGHKGAVWSCCLDA 71 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~----~~---~-----------~~h~~~V~~~~~~~ 71 (268)
.+...|..+|.+++++| |..+.++++.|++|.=|++.+|+-. .+ + ++|...+.++++++
T Consensus 136 ~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 44457999999999985 8889999999999999999888622 11 1 27888899999999
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372 72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (268)
Q Consensus 72 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~ 150 (268)
|+++||+|+.|..|.||++.+.+.+..+. |...|.+++|-....-+++++.|+.+++|+++.-. ....+..|++.|..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLG 291 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceee
Confidence 99999999999999999999999888864 88899999998877789999999999999986433 33455578889998
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN- 229 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~- 229 (268)
+..+.-. .+++.|..|+++++|++.....+-...+.+.+.|++|-.+..|++++++|.|.+|++.+.+++.++..+++
T Consensus 292 IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 292 IDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred echhccc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 8866544 46777778899999999654444434455679999999999999999999999999988888877754322
Q ss_pred ------------ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 230 ------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 230 ------------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+.+++..+ ..++|++||.+|.|++|-+..|
T Consensus 371 ~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCC
Confidence 23455555 5889999999999999998776
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=182.12 Aligned_cols=246 Identities=22% Similarity=0.308 Sum_probs=196.1
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee------CCC------------------------------C
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GET------------------------------G 51 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~------~~~------------------------------~ 51 (268)
+.+.+.||.+.|++++|+| .|.+++++|.|++..||. +-. +
T Consensus 182 CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred ceeeecccccceeeEEecc---ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 3444569999999999995 789999999999999995 100 0
Q ss_pred ----CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeE
Q 024372 52 ----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL 126 (268)
Q Consensus 52 ----~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i 126 (268)
-.+..|.+|.+.|.++.|-..++.++++|+|.+..+||++++..+..+. |....+.++-+|..+++++.+.|.+.
T Consensus 259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTF 338 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTF 338 (481)
T ss_pred ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCcee
Confidence 1245678999999999998889999999999999999999999988775 88889999999999999999999999
Q ss_pred EEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEE-
Q 024372 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT- 204 (268)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~- 204 (268)
++||.+..-.....+.+|...|+++.|.-++ . +++|++|.+|++||++.- .++.++....+++.++++..+.+++.
T Consensus 339 RLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiP 416 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIP 416 (481)
T ss_pred EeccchhhcceeeeecccccceeEEEEecCC-c-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEec
Confidence 9999985444455677889999999987654 3 567889999999999874 57888888899999999999988876
Q ss_pred eCCCeEEEEeCCCceeeeEE----eCCC-CceeeEEc--CCCCCEEEeccCCCeEEEEECCC
Q 024372 205 ADGSSVKFWDANHFGLVKGY----NMPC-NTESASLE--PKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 205 ~~~~~v~~wd~~~~~~~~~~----~~~~-~~~~~~~~--~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
.+++.||+||+...++.+.- +.+. +..+++|. ++ -.-|.++|-|+.+.-|++.+
T Consensus 417 hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 417 HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-ccccccccccceeeeeEecc
Confidence 46789999999765443221 2222 23344443 22 34578899999999998753
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.9e-26 Score=178.28 Aligned_cols=238 Identities=17% Similarity=0.277 Sum_probs=176.7
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
+..|.++.|+| .++.|+.+++||++++|++...++...++ |++++.+|+|.++. .+++|+.||.|+++|+++++.
T Consensus 13 ~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcc
Confidence 56899999995 45578888999999999999887776676 89999999999754 568999999999999999999
Q ss_pred eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 96 ~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
.....|..+++|+.+.+-...+++|++|+.|++||.+... ....+ .....|.++... +..++ .|..+..+.+||+
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~-d~~kkVy~~~v~--g~~Lv-Vg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF-DQGKKVYCMDVS--GNRLV-VGTSDRKVLIYDL 162 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc-ccCceEEEEecc--CCEEE-EeecCceEEEEEc
Confidence 8889999999999999988889999999999999987522 22222 223478887653 33344 4455699999999
Q ss_pred CCCceEEee---cCCCCEEEEEECCCC-cEEEEeCCCeE--EEEeCCCceeeeEEeCC------------CCceeeEEcC
Q 024372 176 RSGKIVQTL---ETKSPVTSAEVSRDG-RYITTADGSSV--KFWDANHFGLVKGYNMP------------CNTESASLEP 237 (268)
Q Consensus 176 ~~~~~~~~~---~~~~~v~~~~~s~~g-~~l~~~~~~~v--~~wd~~~~~~~~~~~~~------------~~~~~~~~~~ 237 (268)
|+.+...+. ..+..+.++++-|++ -|++++-+|.| .++|.....--+.|..+ .++.++.|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 987653322 234568899999965 46666656654 56666521111222211 1234567777
Q ss_pred CCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 238 KLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 238 ~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
. -..|+|||.||.|.+||..+.+.+.
T Consensus 243 ~-~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 243 I-HGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred c-cceEEecCCCceEEEccCcchhhhh
Confidence 4 6679999999999999997665543
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=182.95 Aligned_cols=211 Identities=20% Similarity=0.336 Sum_probs=168.9
Q ss_pred EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC------------------Ceeee-eccCCeEEEEEECCCCC
Q 024372 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG------------------DEKHS-FEHKHIVRACAFSEDTH 115 (268)
Q Consensus 55 ~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~------------------~~~~~-~~~~~~v~~v~~~~~~~ 115 (268)
..+..|++++++.+|++||.++||||.|..|+|.|++.. ..+++ +.|-++|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 356779999999999999999999999999999998521 12333 35889999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCCCCCeE-ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee----cCCCCE
Q 024372 116 LLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPV 190 (268)
Q Consensus 116 ~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v 190 (268)
+|++|+.|+++++||......+... ......++.++.|.|.|.. ++.|++..++++||+.+.+|...- ++...|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999998654322111 1123457999999887764 556788899999999999887543 245679
Q ss_pred EEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 191 TSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 191 ~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+++.+++.|++.++ +-||.|++||--..+|+.++.... .+.+..| ..+++++.+.|.|+.+++|++.+|.++.+|
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 99999999987665 568999999998889998885432 2334444 457999999999999999999999999887
Q ss_pred c
Q 024372 267 S 267 (268)
Q Consensus 267 ~ 267 (268)
+
T Consensus 344 t 344 (430)
T KOG0640|consen 344 T 344 (430)
T ss_pred e
Confidence 4
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.3e-24 Score=180.74 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=184.2
Q ss_pred EeeecCCCeeeEEEecCCCCCcEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLW 88 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw 88 (268)
.+.+|. .+.+++|+| +|..+ ++++.++.+++||..+++.+..+..+.. +..++++|++..+ ++++.|+.+++|
T Consensus 26 ~~~~~~-~~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 26 TFPVGQ-RPRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred EEECCC-CCCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 344444 467899985 77766 6778899999999999998887776544 4678899999866 455678999999
Q ss_pred eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
|+.+......+.+...+..++|+|++++++++..++ .+.+||.++........ .......++|++++..+++++..+
T Consensus 101 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCC
Confidence 999887777776656678899999999999888764 56778986543221111 122456788899888777776667
Q ss_pred CeEEEEeCCCCceEEeecCC--------CCEEEEEECCCCcEEE--EeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcC
Q 024372 168 GGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMPCNTESASLEP 237 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~--~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~ 237 (268)
+.|++||+++++.+..+..+ .....++++|+++++. .+.++.+.+||+++++.++.......+..+.+.|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 258 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP 258 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC
Confidence 99999999999887655321 1234688999998743 3456789999999887776555445566777777
Q ss_pred CCCCEEEec-cCCCeEEEEECCCCcEEeec
Q 024372 238 KLGNIFIAG-GEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 238 ~~~~~~~~g-s~d~~i~~wd~~~g~~~~~~ 266 (268)
+|++|+++ +.++.|++||+.+++.+...
T Consensus 259 -~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 259 -DEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred -CCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 68777765 56899999999999987653
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=201.44 Aligned_cols=198 Identities=22% Similarity=0.363 Sum_probs=164.1
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~~~ 91 (268)
.||...|++|.|+ ..++|+++|.|+|+|+|.+...++++.|. |.+-|++|+|.|. .+|++|||-||.+|||++.
T Consensus 366 ~GHt~DILDlSWS----Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 366 KGHTADILDLSWS----KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hccchhheecccc----cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 5999999999998 45699999999999999999999999997 9999999999984 5789999999999999999
Q ss_pred CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE-ecCC------cccEEEEEEeCCCCc-EEEE
Q 024372 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNS------SGSIRTVAWLHSDQT-ILSS 163 (268)
Q Consensus 92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~------~~~v~~~~~~~~~~~-~~~~ 163 (268)
..+...-....+.|++++|.|+|+..+.|+.+|.+++|+...-+..... +..+ ...|+.+.++|.... +|++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT 520 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe
Confidence 8888777777889999999999999999999999999997532211111 1111 226999999987765 5555
Q ss_pred eeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECCCCcEEEE-eCCCeEEEEeCC
Q 024372 164 CTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSRDGRYITT-ADGSSVKFWDAN 216 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~~g~~l~~-~~~~~v~~wd~~ 216 (268)
+.|..|||+|.+..+.+..|++.. .=....|+.||++|++ ++|..|++|+..
T Consensus 521 -SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 -SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred -cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 456899999999888888887432 2346789999999886 478999999973
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-24 Score=169.93 Aligned_cols=235 Identities=17% Similarity=0.239 Sum_probs=178.8
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeC--CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~--d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
+.-.|..+.|-. .-+.++.+|. |.+||+-++.++++++.|.||+..|.+++.+|-+..++|+|.|++||+||++.
T Consensus 55 kkyG~~~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 55 KKYGVDLACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred ccccccEEEEec---CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence 344677777743 2234555665 99999999999999999999999999999999999999999999999999997
Q ss_pred CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC-CCeEec---CCcccEEEEEEeCCCCcEEEEeeCCC
Q 024372 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVG---NSSGSIRTVAWLHSDQTILSSCTDSG 168 (268)
Q Consensus 93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~ 168 (268)
.++...+.... -..++|.|+|-++|++...+.|++||++.... +.+.+. ......+.+.|+++|..++++ +..+
T Consensus 132 ~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s 209 (311)
T KOG1446|consen 132 KKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNAS 209 (311)
T ss_pred CCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCC
Confidence 77766554322 23478999999999999888999999986532 223332 224567889999999887776 4558
Q ss_pred eEEEEeCCCCceEEeecCCC----CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCC-C-ceeeEEcCCCCC
Q 024372 169 GVRLWDARSGKIVQTLETKS----PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-N-TESASLEPKLGN 241 (268)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 241 (268)
.+.+.|.-+|..+.++.... -.....|+||++++.++ +|++|.+|+++++..+..+..+. . ...+.+.| --.
T Consensus 210 ~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~ 288 (311)
T KOG1446|consen 210 FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYA 288 (311)
T ss_pred cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-cee
Confidence 99999999999888886432 23588999999998876 56999999999998888887752 2 23334444 355
Q ss_pred EEEeccCCCeEEEEEC
Q 024372 242 IFIAGGEDMWVHVFDF 257 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~ 257 (268)
+|++++.. +-+|=.
T Consensus 289 mf~sa~s~--l~fw~p 302 (311)
T KOG1446|consen 289 MFVSASSN--LVFWLP 302 (311)
T ss_pred eeeecCce--EEEEec
Confidence 66666555 666643
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-25 Score=193.39 Aligned_cols=234 Identities=19% Similarity=0.357 Sum_probs=191.5
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE--EeeCccCcEEE-EEecC-CCcEEEEeeCCCcEE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGSADFTAK 86 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~--~~~~h~~~V~~-~~~~~-~~~~l~s~s~D~~v~ 86 (268)
.++||...|+++++. ++-.++++|+|+++++|+....+++. .+.+|.+.|.. ++|.+ ++-.+++|+.|+++.
T Consensus 9 ~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 457999999999986 45589999999999999988777664 56789888876 77764 444588999999999
Q ss_pred EEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 87 iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
+|...+..+..++ .|+..|.+++...++. +++||+|.+.++|-.. +. ......|+..|.++...|++ .+++|+
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l-~~~l~gH~asVWAv~~l~e~--~~vTgs 158 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--EL-VYSLQGHTASVWAVASLPEN--TYVTGS 158 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hh-hcccCCcchheeeeeecCCC--cEEecc
Confidence 9999998888876 4999898888777776 8999999999999653 22 23356789999999999987 455667
Q ss_pred CCCeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEE
Q 024372 166 DSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF 243 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 243 (268)
.|++||+|.- ++.+++|..|.. |..+++-|++.|++++.|+.|++|++ +++++..+..+.. ..++.... +++.+
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~I 234 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLI 234 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeE
Confidence 7899999976 788889987655 89999999999999999999999999 5666766766655 34555444 58889
Q ss_pred EeccCCCeEEEEECC
Q 024372 244 IAGGEDMWVHVFDFH 258 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~ 258 (268)
+++|+|+++++|+..
T Consensus 235 vs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCceEEEeecC
Confidence 999999999999965
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-24 Score=162.28 Aligned_cols=245 Identities=18% Similarity=0.277 Sum_probs=184.8
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee------CCCC----C-----eEEEeeCccCcEEEEEec
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GETG----D-----WIGTFEGHKGAVWSCCLD 70 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~------~~~~----~-----~~~~~~~h~~~V~~~~~~ 70 (268)
+++...+ ..+..|++++|+| .|.+-|.||+.++.+|.. ++.+ + +-+.-+.|++.|++.+|+
T Consensus 23 f~~i~~l-~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 23 FEAINIL-EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred eEEEEEe-cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence 3444434 5677899999996 778889999999999962 2211 1 112235689999999999
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCeee-----ee-ccCCeEEEEEECC----CCCEEEEee-CCCeEEEEECCCCCCCCe
Q 024372 71 ANALFSASGSADFTAKLWDALTGDEKH-----SF-EHKHIVRACAFSE----DTHLLLTGG-FEKILRIFDLNRPDAPPR 139 (268)
Q Consensus 71 ~~~~~l~s~s~D~~v~iw~~~~~~~~~-----~~-~~~~~v~~v~~~~----~~~~l~s~~-~d~~i~~~d~~~~~~~~~ 139 (268)
|+|.++|+||.|++|++-..+...+.. .+ -|...|+.++|-. .+.+|++++ .|-.|.+-|-..+. ..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cce
Confidence 999999999999999997665433222 22 2777899999944 356777765 34445444554443 345
Q ss_pred EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--------CCCEEEEEECCCCcEEEEe-CCCeE
Q 024372 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSV 210 (268)
Q Consensus 140 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~s~~g~~l~~~-~~~~v 210 (268)
....|.+.|..+- + -++.++++|+.|++||+||+|-..++.++.. ...|.++++.|.|++++++ .|...
T Consensus 178 a~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc 255 (350)
T KOG0641|consen 178 ALSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC 255 (350)
T ss_pred eecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence 5667888887753 2 2457899999999999999999999988742 1458899999999999987 58899
Q ss_pred EEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 211 ~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.+||++.++.++.|.-+. .+.++.|+| ...++.++|.|..|++=|++
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecc
Confidence 999999999998886544 456677776 68999999999999999985
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.3e-27 Score=202.75 Aligned_cols=238 Identities=17% Similarity=0.258 Sum_probs=193.6
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~ 94 (268)
...+.|.. -+.++||+++..|.|.+||+.. .+++..|..|+-.|.++.|++.. .+|+|||+||+||+||+...+
T Consensus 90 ~~DVkW~~--~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQ--LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhccccc--chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 34667763 4668999999999999999988 67778899999999999998765 678999999999999999888
Q ss_pred eeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372 95 EKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (268)
Q Consensus 95 ~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i 172 (268)
...++. ..+.|+.|.|+| .+..++++...|.+++||++.+......+..|.|+|.|+.|+| ++.++++|+.|+.|+|
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKI 246 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEE
Confidence 776664 566899999999 6789999999999999999987665566778999999999999 5567888889999999
Q ss_pred EeCCCCc--eEEeecCCCCEEEEEECCCCcE-EEEe---CCCeEEEEeCCC-ceeeeEEeCCCCceeeE-EcCCCCCEEE
Q 024372 173 WDARSGK--IVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANH-FGLVKGYNMPCNTESAS-LEPKLGNIFI 244 (268)
Q Consensus 173 wd~~~~~--~~~~~~~~~~v~~~~~s~~g~~-l~~~---~~~~v~~wd~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 244 (268)
||..+.+ .+.+++...++.+++|-|...+ |+++ .|-.|++||++. |-+-.+|.-+....... |...+...|.
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 9997654 4567777789999999999866 4433 478999999954 65666776666655444 4443567888
Q ss_pred eccCCCeEEEEECCC
Q 024372 245 AGGEDMWVHVFDFHT 259 (268)
Q Consensus 245 ~gs~d~~i~~wd~~~ 259 (268)
++|.|+.|..-.+++
T Consensus 327 s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKN 341 (839)
T ss_pred eecCccHHHHhhhhc
Confidence 999999887776654
No 95
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.9e-25 Score=173.35 Aligned_cols=204 Identities=23% Similarity=0.358 Sum_probs=168.6
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------eEEE----e-----eCccCcEEEEEecC-CCcEE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGT----F-----EGHKGAVWSCCLDA-NALFS 76 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------~~~~----~-----~~h~~~V~~~~~~~-~~~~l 76 (268)
..|-+.|+++...| ..|+|+++|+.||.|.+||++... ++.. . .+|+-.|.++.|-| |.-++
T Consensus 40 r~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 46899999999988 479999999999999999987532 1111 1 35888899988876 44677
Q ss_pred EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECC---CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE---DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (268)
Q Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 153 (268)
.|+|.|+++|+||.++.+....|.-++.|..-+++| ...++|+|..+-.|++-|+.++... ....+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-H~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-HTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-eeeccccCceEEEEe
Confidence 899999999999999999999999999999988988 3567888889999999999887643 455678899999999
Q ss_pred eCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecC---------------CCCEEEEEECCCCcEEE-EeCCCeEEEEeCC
Q 024372 154 LHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET---------------KSPVTSAEVSRDGRYIT-TADGSSVKFWDAN 216 (268)
Q Consensus 154 ~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~---------------~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~ 216 (268)
+|...+++++|+-||.||+||+|.. -|+..+.. .+.++.++|+.+|++++ ++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 9999999999999999999999865 45444421 24689999999999876 5778999999987
Q ss_pred Cce
Q 024372 217 HFG 219 (268)
Q Consensus 217 ~~~ 219 (268)
+++
T Consensus 277 ~G~ 279 (397)
T KOG4283|consen 277 SGR 279 (397)
T ss_pred cCc
Confidence 653
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=9.1e-26 Score=188.28 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=183.6
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----eEEEe-eCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTF-EGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~~~~~-~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
+.+.+|+..|.++++.| .|..|++||.|.+|++||..... ..+.| .+-..+|++++|++.+..|+..+....
T Consensus 161 i~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 45668999999999985 79999999999999999986542 22223 234568999999999988877777889
Q ss_pred EEEEeCCCCCeeee-------------eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec-----CCc
Q 024372 85 AKLWDALTGDEKHS-------------FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-----NSS 145 (268)
Q Consensus 85 v~iw~~~~~~~~~~-------------~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~~~ 145 (268)
++|+|-........ -.|...++|.+|+| +...++|++.|+++|+||++......+.+. ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999754332222 13666899999999 456889999999999999987654433332 233
Q ss_pred ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEee-c---CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc
Q 024372 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTL-E---TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF 218 (268)
Q Consensus 146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~-~---~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~ 218 (268)
-+++..+|++++.. ++++..||.|.+||.++... ...+ + ....+.|+.||+||++|++ +.|+++++||++++
T Consensus 318 v~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 45777899998876 55555679999999865322 2222 2 2346999999999999987 78899999999986
Q ss_pred -eeeeEEeC---CCCceeeEEcCCCCCEEEeccC------CCeEEEEECCCCcEEe
Q 024372 219 -GLVKGYNM---PCNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQIA 264 (268)
Q Consensus 219 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~------d~~i~~wd~~~g~~~~ 264 (268)
+++..+.. +.....++|+| +.+++++|.. -+++++||..+-+.+.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred ccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 34444432 23345677777 6888988854 3679999987666554
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=187.43 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=182.1
Q ss_pred CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE------------EEeeCccCcEEEEE
Q 024372 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI------------GTFEGHKGAVWSCC 68 (268)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~------------~~~~~h~~~V~~~~ 68 (268)
||-.+-..-.+.....+.|+++.|+| .|.++++.+.....+++|-.--+.+ ..-+||.+.+.+.+
T Consensus 199 Mdas~~~fr~l~P~E~h~i~sl~ys~---Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~ 275 (641)
T KOG0772|consen 199 MDASMRSFRQLQPCETHQINSLQYSV---TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC 275 (641)
T ss_pred ccccchhhhccCcccccccceeeecC---CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc
Confidence 33333332222345667899999986 6778888999999999985432222 22368999999999
Q ss_pred ecCCC-cEEEEeeCCCcEEEEeCCCCCeee-eecc------CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-
Q 024372 69 LDANA-LFSASGSADFTAKLWDALTGDEKH-SFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR- 139 (268)
Q Consensus 69 ~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~-~~~~------~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~- 139 (268)
|+|+. ..++|++.|+++|+||++..+... .+.+ .-++..|.|+++++++|+|+.||.|.+|+.+.......
T Consensus 276 whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~ 355 (641)
T KOG0772|consen 276 WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM 355 (641)
T ss_pred cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence 99986 467899999999999998765422 3322 22678999999999999999999999999754332221
Q ss_pred -EecCCcc--cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeec---CCCCEEEEEECCCCcEEEEeC------
Q 024372 140 -EVGNSSG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLE---TKSPVTSAEVSRDGRYITTAD------ 206 (268)
Q Consensus 140 -~~~~~~~--~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~---~~~~v~~~~~s~~g~~l~~~~------ 206 (268)
....|.. .|+||.|++++..+++-|. |+++++||+|.. +++.... ...+...++|||+.+++++|.
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccC-CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 1223444 8999999998877676665 589999999975 4454432 234567899999999988763
Q ss_pred -CCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372 207 -GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 207 -~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~w 255 (268)
.+.+.+||..++..+..+.+... +..+.|+|..++ +.+|+.||.++||
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhh-eeeecCCCceEEE
Confidence 25799999999999888877643 456777886555 5566777888887
No 98
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=5.9e-25 Score=181.00 Aligned_cols=262 Identities=19% Similarity=0.194 Sum_probs=202.0
Q ss_pred CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCccCcEEEEEecCCC-cEE
Q 024372 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFS 76 (268)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~~~V~~~~~~~~~-~~l 76 (268)
|...+..+.+..-|.++|.+++|+|.. ..+++|+|..-|+|-+||..+. +-+..+..|.++|..+.|+|.+ ..+
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~-~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTE-NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred ccccceecceeEecccceEEEEecccC-cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 344455555666789999999999954 4579999999999999999532 3466788899999999999876 578
Q ss_pred EEeeCCCcEEEEeCCCCCeeeeecc---CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372 77 ASGSADFTAKLWDALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (268)
Q Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 153 (268)
++.|.||+||+-|++.+.....+.. ......+.|+.+...++.+..=|.+.+||++.+.........|...|..+++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999987765443332 2235567788877767777666799999998876555545556669999999
Q ss_pred eCCCCcEEEEeeCCCeEEEEeCCCCc-----eEEeecCCCCEEEEEECCCC-cEEEEeCCCeEEEEeCC----CceeeeE
Q 024372 154 LHSDQTILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKG 223 (268)
Q Consensus 154 ~~~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~v~~wd~~----~~~~~~~ 223 (268)
+|..++++++++-|++.+|||+|.-. .+.++.|...|+++.|||.+ +++.++.|..||+||.. ...+..+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99999999999999999999998632 36777888889999999986 55556789999999983 3444445
Q ss_pred EeCCCC------ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 224 YNMPCN------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 224 ~~~~~~------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
+.++.. .....|.| +..++++|-.-+.|-++|-..|+++..
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred eeccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeee
Confidence 544322 23456666 688999999888899999988886654
No 99
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=179.81 Aligned_cols=234 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCC---eEE------------------EeeCccCcEEEEEecCCC-cEEEEeeCCCcEE
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGD---WIG------------------TFEGHKGAVWSCCLDANA-LFSASGSADFTAK 86 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~---~~~------------------~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~ 86 (268)
.-|+|+|.|+.|-.|.|||+.-.. ..- ...+|+..|.+++|...- ..|||||.|++|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 348899999999999999875321 001 123799999999887654 5789999999999
Q ss_pred EEeCCCCCeeeeec-cCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 87 LWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 87 iw~~~~~~~~~~~~-~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
+||+.++++..++. |...|.++.|+| .+.+|++|++|+++++.|.+.+....... ...+.|..++|.|...+.+..+
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEe
Confidence 99999999999998 778999999999 67899999999999999998644333333 3467899999999888888889
Q ss_pred eCCCeEEEEeCCCC-ceEEeecC-CCCEEEEEECCCCcE-EE-EeCCCeEEEEeCCCc--eeeeEEeCCCC-ceeeEEcC
Q 024372 165 TDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGRY-IT-TADGSSVKFWDANHF--GLVKGYNMPCN-TESASLEP 237 (268)
Q Consensus 165 ~~d~~i~iwd~~~~-~~~~~~~~-~~~v~~~~~s~~g~~-l~-~~~~~~v~~wd~~~~--~~~~~~~~~~~-~~~~~~~~ 237 (268)
++||+|+-+|+|.. +++.+++. ..+|.++.+++.-.. ++ ++.++.|++|++... +.++.....-. ..+.+..+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 99999999999975 88888874 467999999987543 33 457899999998543 33333333222 23444456
Q ss_pred CCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 238 KLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 238 ~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
...-.++.||....+++||..++..+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 55678888999889999999877654
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.9e-25 Score=168.52 Aligned_cols=249 Identities=18% Similarity=0.224 Sum_probs=185.5
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcEEEEEecC--CCcEEEEeeCCCcEEE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKL 87 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~v~i 87 (268)
.+|++.|.++... --|..|||++.|++|+|+.++.+ +++.+|.||++||..++|.. -|.+|||++.||.|.|
T Consensus 8 t~H~D~IHda~lD---yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLD---YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhh---hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 4788888855443 25899999999999999988764 57899999999999999964 6899999999999999
Q ss_pred EeCCCCCeeeee---ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCC-C-CCCeEecCCcccEEEEEEeCCCC--
Q 024372 88 WDALTGDEKHSF---EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRP-D-APPREVGNSSGSIRTVAWLHSDQ-- 158 (268)
Q Consensus 88 w~~~~~~~~~~~---~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-- 158 (268)
|.-+++.=.... .|...|++++|-| -|-+|++++.||.|.+++.+.. . ........|.-.+++++|.|..-
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 998777422222 3778999999988 4679999999999999987654 1 12234456777899999987621
Q ss_pred -----------cEEEEeeCCCeEEEEeCCCCce--EEeecCC-CCEEEEEECCCC----cEEE-EeCCCeEEEEeCCCc-
Q 024372 159 -----------TILSSCTDSGGVRLWDARSGKI--VQTLETK-SPVTSAEVSRDG----RYIT-TADGSSVKFWDANHF- 218 (268)
Q Consensus 159 -----------~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~-~~v~~~~~s~~g----~~l~-~~~~~~v~~wd~~~~- 218 (268)
.-|++|+-|+.|+||+...++- -+++..| ..|..+++.|.- ..++ ++.|++|.||..+..
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 2356666779999999987642 2345544 458999999964 2344 467999999987532
Q ss_pred ---eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC-CCcEEee
Q 024372 219 ---GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIAI 265 (268)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~~~ 265 (268)
+..-....+.....+.++. .|..|+.++.|..|.+|.-. .||-..+
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred CcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence 1111112445567788887 69999999999999999754 3554443
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.9e-25 Score=180.78 Aligned_cols=205 Identities=20% Similarity=0.306 Sum_probs=168.3
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------eEEEeeCccCcEEEEEecCCC-cEEEEeeC
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSA 81 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~ 81 (268)
+.|.||++.-.+|.|++..+ .+|++|+.|+++.+||+.... ....+.+|+..|..++|++.. ..+++++.
T Consensus 171 l~L~gH~~eg~glsWn~~~~--g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQE--GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred eEEEeecccccccccccccc--eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 36779999888999998653 478999999999999987642 346789999999999999765 56799999
Q ss_pred CCcEEEEeCCC--CCeeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 82 DFTAKLWDALT--GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 82 D~~v~iw~~~~--~~~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
|+.+.|||+++ .++.... .|..+|.|++|+| ++.+||||+.|+++.+||++.-......+..|...|.+|.|+|..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 99999999985 3333332 4888999999999 778999999999999999987766677788899999999999999
Q ss_pred CcEEEEeeCCCeEEEEeCCC-CceE-------------Eeec-CCCCEEEEEECCCCcEEEE--eCCCeEEEEeCC
Q 024372 158 QTILSSCTDSGGVRLWDARS-GKIV-------------QTLE-TKSPVTSAEVSRDGRYITT--ADGSSVKFWDAN 216 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~-~~~~-------------~~~~-~~~~v~~~~~s~~g~~l~~--~~~~~v~~wd~~ 216 (268)
..++++++.|+.+.+||+.. ++.. -+.. |...|....|+|+...+++ ++|+.+.||+.-
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999999999999964 2221 1122 2356999999999987665 468899999974
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.2e-24 Score=192.51 Aligned_cols=254 Identities=16% Similarity=0.263 Sum_probs=191.6
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEe--CCCCeEEeeCCC------------CCeEEEeeCccCcEEEEEecC
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDA 71 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s--~d~~i~iw~~~~------------~~~~~~~~~h~~~V~~~~~~~ 71 (268)
+.+|..+.-++..|.+++.+ |||..+|||+ .|+.++||+.+. .+.+.+...|.+.|.++.|++
T Consensus 3 l~kp~wv~H~~~~IfSIdv~---pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 3 LLKPTWVNHNEKSIFSIDVH---PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP 79 (942)
T ss_pred eecccccccCCeeEEEEEec---CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC
Confidence 45666564345567788887 5999999999 999999997542 234667788999999999999
Q ss_pred CCcEEEEeeCCCcEEEEeCCCC----------C--------eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 72 NALFSASGSADFTAKLWDALTG----------D--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 72 ~~~~l~s~s~D~~v~iw~~~~~----------~--------~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
||++||+||.|+.|.+|+.... . +...+ .|...|..++|+|++.+|++++.|+.|.+|+..
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 9999999999999999987630 0 12222 488889999999999999999999999999988
Q ss_pred CCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-------CCCEEEEEECCCCcEEEEe
Q 024372 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTA 205 (268)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~ 205 (268)
+. .....+..|.+.|..+.|.|-++ ++++-++|++|+||++.+-.+.+.+.. ..-...+.|||||.+|++.
T Consensus 160 tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 160 TF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 76 45566678889999999999876 566667889999999877555554421 2347889999999999875
Q ss_pred C-----CCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCC-----C-------CC----EEEeccCCCeEEEEECCCCcEE
Q 024372 206 D-----GSSVKFWDANHFGLVKGYNMPCN-TESASLEPK-----L-------GN----IFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 206 ~-----~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~-----~-------~~----~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
. ...+.|.+-++++.-..+-.|.. .....|.|. . +. .+++||.|+.|.||....-.++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 3 24677877777765555544433 333444321 0 11 5667999999999998665554
Q ss_pred e
Q 024372 264 A 264 (268)
Q Consensus 264 ~ 264 (268)
-
T Consensus 318 ~ 318 (942)
T KOG0973|consen 318 F 318 (942)
T ss_pred h
Confidence 3
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=177.13 Aligned_cols=228 Identities=22% Similarity=0.349 Sum_probs=182.6
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
+|.+.|.+++-+ +||.|||+|..|..++||+..+.+.++.|.+|.+.|.+++|-.....+.++|.|.++++|++...
T Consensus 200 ~h~keil~~avS---~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 200 GHVKEILTLAVS---SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred cccceeEEEEEc---CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 899999999988 49999999999999999999999999999999999999999877778899999999999999766
Q ss_pred Ceee-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372 94 DEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (268)
Q Consensus 94 ~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i 172 (268)
..+. .+.|++.|..+.-..-++++.+|+.|+++++|++.... .-.+..+.+.+-|++|..+. + +++|+++|.|-+
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~-H-fvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE-H-FVSGSDNGSIAL 352 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc-c-eeeccCCceEEE
Confidence 5444 45799999988877677777778899999999995432 23444567789999987643 4 557788899999
Q ss_pred EeCCCCceEEeec--CC-----------CCEEEEEECCCCcEEEEeC-CCeEEEEeCCCc----eeeeEEeCCCCceeeE
Q 024372 173 WDARSGKIVQTLE--TK-----------SPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNMPCNTESAS 234 (268)
Q Consensus 173 wd~~~~~~~~~~~--~~-----------~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~----~~~~~~~~~~~~~~~~ 234 (268)
|++.+.+++.+.. |. ..+++++..|...++++++ ++.||+|-+..+ .++..+....-+.+++
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence 9999888876543 11 1578999999999998764 799999987654 4455555555566777
Q ss_pred EcCCCCCEEEec-cCC
Q 024372 235 LEPKLGNIFIAG-GED 249 (268)
Q Consensus 235 ~~~~~~~~~~~g-s~d 249 (268)
+++ +|+.+++| |..
T Consensus 433 f~~-sgk~ivagiGkE 447 (479)
T KOG0299|consen 433 FSN-SGKRIVAGIGKE 447 (479)
T ss_pred Ecc-CCCEEEEecccc
Confidence 776 57755544 544
No 104
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.8e-24 Score=184.41 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=199.1
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
+.+.||...|++++|+. |. .++..+..+.+++|+..+.++++++..- -+.++.|-|.+.+++.|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~---d~-~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS---DS-ILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeec---Cc-eeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEE
Confidence 44569999999999984 44 4444556678999999999999999753 788889999999999999999999999
Q ss_pred CCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC----CCCCCe-------EecCCcccEEEEEEeCCC
Q 024372 90 ALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR----PDAPPR-------EVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 90 ~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~----~~~~~~-------~~~~~~~~v~~~~~~~~~ 157 (268)
+.......++. |...+..++.+||++-+++|+.|+++++||..- +..... ........+.|+.++|++
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 98887766654 889999999999999999999999999999631 111101 111234678999999987
Q ss_pred CcEEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCc-eeeE
Q 024372 158 QTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-ESAS 234 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~-~~~~ 234 (268)
.. ++.+--|+++++|=+.+.+-.-.+ .|.=||.|+.+|||++++++ +.|+.|++|-++-+.|.+.+..+... .++.
T Consensus 521 k~-LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 521 KL-LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred cE-EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 65 555566799999999988765555 45568999999999999875 57999999999999999988877665 6677
Q ss_pred EcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 235 ~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
+.| ...+|.++|.|+.|+-||...=+++.
T Consensus 600 F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred Ecc-cceeEEEecCcceEEeechhhhhhhe
Confidence 777 68999999999999999875544443
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.5e-23 Score=159.75 Aligned_cols=241 Identities=17% Similarity=0.231 Sum_probs=197.8
Q ss_pred cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC
Q 024372 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD 82 (268)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D 82 (268)
+.++.+-....||.+.|-.++|+|..|| ++++++.|++|++||...++++.......+.+ .++|+|++.+++.++.|
T Consensus 51 ~~r~~~~~~~~gh~~svdql~w~~~~~d--~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kd 127 (313)
T KOG1407|consen 51 RDRFRKELVYRGHTDSVDQLCWDPKHPD--LFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKD 127 (313)
T ss_pred chhhhhhhcccCCCcchhhheeCCCCCc--ceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCc
Confidence 3445556667899999999999997665 89999999999999999999998887655544 47899999999999999
Q ss_pred CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
-.|.+.|..+.+.....+.+..+.-++|+.++.+++.....|+|.+.....=+ +.+.+..|.....||.|.|++.+ ++
T Consensus 128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~Gry-fA 205 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRY-FA 205 (313)
T ss_pred ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCce-Ee
Confidence 99999999998888888888888889999888888877778999998875322 33455567777888999988764 66
Q ss_pred EeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCC
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (268)
+|+.|-.+.+||+...-|++.+. ..-+|..+.||.||++|+++ +|..|-|=+++++..+...+.......++++|. .
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk-~ 284 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK-R 284 (313)
T ss_pred eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC-C
Confidence 77778999999999888888775 45679999999999999875 688899999999988877776667788899984 6
Q ss_pred CEEEeccCC
Q 024372 241 NIFIAGGED 249 (268)
Q Consensus 241 ~~~~~gs~d 249 (268)
.+|+-++.|
T Consensus 285 ~LLAyA~dd 293 (313)
T KOG1407|consen 285 PLLAYACDD 293 (313)
T ss_pred ceeeEEecC
Confidence 677766544
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3.4e-22 Score=166.11 Aligned_cols=230 Identities=17% Similarity=0.160 Sum_probs=169.1
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~ 110 (268)
.++++++.|+.+.+||..+++.+..+.+|.. +..++|+|++..+ ++++.++.+++||..+++....+.....+..+.|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4788999999999999999999998987654 6679999999866 6777899999999998887766654444567889
Q ss_pred CCCCCEEEE-eeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC
Q 024372 111 SEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP 189 (268)
Q Consensus 111 ~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 189 (268)
+|+++.+++ +..++.+++||+.+... ...+. ....+..++++|++..++++..+...+.+||.++++.+..+.....
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 158 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR 158 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC
Confidence 999987755 45689999999975432 22222 1224567899888776655544434678889998887766554445
Q ss_pred EEEEEECCCCcEEE-Ee-CCCeEEEEeCCCceeeeEEeCCC--------CceeeEEcCCCCCE-EEeccCCCeEEEEECC
Q 024372 190 VTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDFH 258 (268)
Q Consensus 190 v~~~~~s~~g~~l~-~~-~~~~v~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~gs~d~~i~~wd~~ 258 (268)
+..+.|+|+|++++ ++ .++.|++||+++.+.++.+.... ....+.+++ ++++ +++.+.+..|.+||.+
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECC
Confidence 67899999998774 44 47899999999887776654321 123455666 5665 4555666779999999
Q ss_pred CCcEEee
Q 024372 259 TGEQIAI 265 (268)
Q Consensus 259 ~g~~~~~ 265 (268)
+++.+..
T Consensus 238 ~~~~~~~ 244 (300)
T TIGR03866 238 TYEVLDY 244 (300)
T ss_pred CCcEEEE
Confidence 8887643
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-23 Score=164.74 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=164.7
Q ss_pred CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (268)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~ 81 (268)
|.++--..-.+..|.+.|++|.|.+... -..|++|+.||.|.+|+...-+++.++++|+++|..++++|.+++.++.+.
T Consensus 69 Dm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred eccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 3344334444567999999999987442 237999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372 82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 82 D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
|+.+++||+.++........+..-..+.|+|.|..++.++.+ .|-+|.++.... ..+.... ..+.|+.|.. +..+
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v-~~~i~~~-~r~l~~~~l~--~~~L 222 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASV-FREIENP-KRILCATFLD--GSEL 222 (362)
T ss_pred CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhH-hhhhhcc-ccceeeeecC--CceE
Confidence 999999999999887776655555669999999988877764 578998875432 2222222 3466766643 3456
Q ss_pred EEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEE--CCCCcEEEE-eCCCeEEEEeCCCc
Q 024372 162 SSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFWDANHF 218 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~--s~~g~~l~~-~~~~~v~~wd~~~~ 218 (268)
++|.+++.|++||.....+...+. |..+|..+.+ .|++.+|++ ++||.|++||++..
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 677788999999999988888776 4466888874 567778765 67999999998654
No 108
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=3.7e-23 Score=166.87 Aligned_cols=236 Identities=18% Similarity=0.255 Sum_probs=182.1
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------------CCeEEEeeCccCcEEEEEecCCC-cEE
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------------GDWIGTFEGHKGAVWSCCLDANA-LFS 76 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------------~~~~~~~~~h~~~V~~~~~~~~~-~~l 76 (268)
+|.+.++.+.-++.. +.-++|+-+..|.|+||+... .+.+.++.+|+..=+.++|+|-. ..|
T Consensus 149 ~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 788899988887753 556899999999999998642 24678999999999999999843 236
Q ss_pred EEeeCCCcEEEEeCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC-eEecCCcccEEE
Q 024372 77 ASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRT 150 (268)
Q Consensus 77 ~s~s~D~~v~iw~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~ 150 (268)
+||---+.|++|...++.= .....|...|-.++|+| ...+|++|+-|+.|++||++.+.... .....|.+.|+-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 7777778899999887652 22334888999999999 45689999999999999998763332 344568889999
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCCC---ceEEeec-CCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCC--c----
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANH--F---- 218 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~--~---- 218 (268)
|.|+..-+ ++++|++||+++|||+|+. +++.+|+ |..+|.++.|+|.. .++++++|..|.+||+.- .
T Consensus 308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 99987665 8999999999999999864 5677776 56789999999965 455667899999999831 1
Q ss_pred ------e-------eeeEEeCCCCceeeEEcCCCCCEEEeccCCCe
Q 024372 219 ------G-------LVKGYNMPCNTESASLEPKLGNIFIAGGEDMW 251 (268)
Q Consensus 219 ------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~ 251 (268)
. ++..+..+.....+.|++....++++-+.||.
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 1 12222333445567788888889998888884
No 109
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.7e-25 Score=191.00 Aligned_cols=196 Identities=21% Similarity=0.384 Sum_probs=170.6
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.|.+|+.+|-++.|++ +-.+|++|+++|+|++||++.++.+++|-||...+.++.|+|-+.|.|+|+.|..+++||.
T Consensus 65 S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred eeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 3579999999999985 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
....+.+.+. |...+.++.|+|+|+++++|+.|.++++||+..++ ...++..|.+.+..+.+. +...+++.|+.|++
T Consensus 142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~h-p~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFH-PLEVLLAPGSSDRT 219 (825)
T ss_pred hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccC-chhhhhccCCCCce
Confidence 9777777765 77789999999999999999999999999997665 345666788889888854 45678888999999
Q ss_pred EEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeCCCeEE
Q 024372 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVK 211 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~ 211 (268)
+++||+++.+.+...+. ...|.+.+|+|+++.+.++..-.++
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 99999999988876654 3569999999999998887644333
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.4e-22 Score=149.58 Aligned_cols=237 Identities=19% Similarity=0.248 Sum_probs=181.4
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEe--eCCCCCeE---EEeeCccCcEEEEEecC----CCcEEEEee-CCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDWI---GTFEGHKGAVWSCCLDA----NALFSASGS-ADF 83 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw--~~~~~~~~---~~~~~h~~~V~~~~~~~----~~~~l~s~s-~D~ 83 (268)
-|.+.|.+.+|+| +|+++|+||+|++|++. +.++...+ -+|+-|.+-|+.++|-. .+.+|++++ .|.
T Consensus 87 hhkgsiyc~~ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 87 HHKGSIYCTAWSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccCccEEEEEecC---ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 4889999999985 99999999999999985 44443322 35778999999999953 356778765 688
Q ss_pred cEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-------CCcccEEEEEEeC
Q 024372 84 TAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLH 155 (268)
Q Consensus 84 ~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~ 155 (268)
.|++-|+.+++..+.+. |..-|..+ ++.++-++++|+.|++||.||++..... +... .....|..++..|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecccee-eeccCcccCCCcccceeEEEEECC
Confidence 99999999999988875 76667655 5667889999999999999999754322 1111 1224678888777
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce--ee---eEEeCCC
Q 024372 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG--LV---KGYNMPC 228 (268)
Q Consensus 156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~--~~---~~~~~~~ 228 (268)
.+ .++++|-.|...-+||+|-++.++.+. +...+.++-|+|...|+.+ +-|..|++=|++..- .+ -.-.++.
T Consensus 242 sg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 242 SG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred Cc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 65 578888888999999999999998875 5567999999999988765 569999999986421 11 1112334
Q ss_pred CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 229 NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
..+.+.|.|. .--|++.|.|+++-+|-.
T Consensus 321 k~i~~rwh~~-d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 321 KAIQCRWHPQ-DFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEEEecCc-cceeeeccCcceEEEecc
Confidence 4566777774 666889999999999964
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-22 Score=179.08 Aligned_cols=239 Identities=16% Similarity=0.236 Sum_probs=192.4
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.+|+.+-+.++|.| +|..|.+++.|+.|++|+...- +.-.++.-|...|.+++.. +.+|++|+.+++|.++..-
T Consensus 10 yaht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 47999999999985 8999999999999999976655 4444454477788777654 4588999999999999987
Q ss_pred CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+..-..+ ...-++++++|+.+|+++|.|+.|-.|++-++.... .......|.++|.++.|+|.+. ++++++-||.|
T Consensus 85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v 162 (933)
T KOG1274|consen 85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKV 162 (933)
T ss_pred CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCC-EEEEEecCceE
Confidence 77654333 345688999999999999999999999999987543 3445567899999999999875 55566667999
Q ss_pred EEEeCCCCceEEeecC---------CCCEEEEEECCC-CcEEEEeCCCeEEEEeCCCceeeeEEeC---CCCceeeEEcC
Q 024372 171 RLWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNM---PCNTESASLEP 237 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~---------~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~ 237 (268)
++||+.++.+.+++.. ...+..++|+|+ |.+++.+.++.|++++...++....+.. .+....+.|+|
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 9999999988776643 123678899999 5677778899999999999887766643 33456677888
Q ss_pred CCCCEEEeccCCCeEEEEECCC
Q 024372 238 KLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 238 ~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
. |.|+++++.|+.|.|||+++
T Consensus 243 n-G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 N-GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred C-CcEEeeeccCCcEEEEeccc
Confidence 4 99999999999999999986
No 112
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=3.1e-23 Score=168.28 Aligned_cols=224 Identities=22% Similarity=0.343 Sum_probs=173.3
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCC-cEEEEee
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS 80 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s 80 (268)
|++ .||+++|.+++|+|. +-+.+|+||.|.+|.||.+-.+ +.+..|.||...|.-++|+|.- ..|+|++
T Consensus 75 P~v-~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 75 PLV-CGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCc-cCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 443 499999999999995 4479999999999999987654 4577889999999999999875 5788999
Q ss_pred CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCCc
Q 024372 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQT 159 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 159 (268)
.|.+|.+||+.++....++.|+..|.+++|+.+|..+++++.|+.||+||.++++..... ..|.|. -..+.|..++.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK- 229 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCc-
Confidence 999999999999999889999999999999999999999999999999999887654333 344443 33455666655
Q ss_pred EEEEeeC---CCeEEEEeCCCCc---eEEeecCCCCEEEEEECCCCcEE-EEe-CCCeEEEEeCCCce----eeeEEeCC
Q 024372 160 ILSSCTD---SGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFG----LVKGYNMP 227 (268)
Q Consensus 160 ~~~~~~~---d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~s~~g~~l-~~~-~~~~v~~wd~~~~~----~~~~~~~~ 227 (268)
++++|.. ++++-|||...-+ .++++.....|.--.+.||-+++ .+| .|+.||+|.+.+.. -+.+|...
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 7777743 3689999986643 35667777778888889998765 355 68899999987643 24455444
Q ss_pred CCceeeEEcC
Q 024372 228 CNTESASLEP 237 (268)
Q Consensus 228 ~~~~~~~~~~ 237 (268)
.......+.|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 3333333333
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2e-22 Score=158.85 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=171.7
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
..|..|+++++|.+ -..+++|+.|+.|+.+|+.+++-. .+..|..+|+++.+.+-...+++||+|++|++||...
T Consensus 51 ~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD----ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eecCCceeeeeccC----CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 47999999999984 357899999999999999988644 4667999999999998777889999999999999987
Q ss_pred CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (268)
Q Consensus 93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 171 (268)
..+...+.....|.++..+ +..|+.|+.+..+.+||++.-....+ .....+-.+.|++..|.+.-+++++- ||.|-
T Consensus 126 ~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi-eGRVa 202 (323)
T KOG1036|consen 126 KVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI-EGRVA 202 (323)
T ss_pred cccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee-cceEE
Confidence 6666677777788877654 66899999999999999986443221 22234557899999996666666654 58877
Q ss_pred EEeCCCCce----EEeecCC----------CCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeCCCC-ceeeEE
Q 024372 172 LWDARSGKI----VQTLETK----------SPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCN-TESASL 235 (268)
Q Consensus 172 iwd~~~~~~----~~~~~~~----------~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~ 235 (268)
+=.+...++ ...|+.| .+|++++|+|-...++ +++||.|.+||+.+.+.++.+..-.. +.++++
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 744433321 1223221 3799999999855555 56799999999998887777765433 556666
Q ss_pred cCCCCCEEEeccC
Q 024372 236 EPKLGNIFIAGGE 248 (268)
Q Consensus 236 ~~~~~~~~~~gs~ 248 (268)
+. +|.+||+|+.
T Consensus 283 s~-dG~~LAia~s 294 (323)
T KOG1036|consen 283 SM-DGSLLAIASS 294 (323)
T ss_pred cc-CCCeEEEEec
Confidence 65 7999998864
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=5.9e-23 Score=184.47 Aligned_cols=249 Identities=16% Similarity=0.244 Sum_probs=186.9
Q ss_pred eecEEe-eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC----------C--------CeEEEeeCccCcEEEE
Q 024372 7 AVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----------G--------DWIGTFEGHKGAVWSC 67 (268)
Q Consensus 7 ~~~~~~-~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~----------~--------~~~~~~~~h~~~V~~~ 67 (268)
++.+.. ..|.+.|+++.|+| ||++||+||.|+.|.||.-.. | +.+..|++|.+.|..+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~---dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSP---DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred chhheeeccccCceeEEEECC---CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 344444 37999999999985 999999999999999997652 1 2577899999999999
Q ss_pred EecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC---
Q 024372 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--- 143 (268)
Q Consensus 68 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--- 143 (268)
+|+|++.++||+|.|++|.+||..+......+. |...|..+.|.|-|++||+-+.|++|++|.+.+-.. ...+..
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~ 214 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKSITKPFE 214 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEeeccchh
Confidence 999999999999999999999999997777664 899999999999999999999999999999654211 111111
Q ss_pred ---CcccEEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCCceEEe-ecCCCCEEEEEECC--------CC-------c-
Q 024372 144 ---SSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQT-LETKSPVTSAEVSR--------DG-------R- 200 (268)
Q Consensus 144 ---~~~~v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~--------~g-------~- 200 (268)
-.....-+.|+|+|.++.+.-.-. .++.|.+=.+=+.-.. +.|+.++.++.|+| +| .
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y 294 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY 294 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence 112356789999998766543222 3677766544333333 35667899999986 11 1
Q ss_pred -EEEE-eCCCeEEEEeCCCceeeeEEe-C-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 201 -YITT-ADGSSVKFWDANHFGLVKGYN-M-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 201 -~l~~-~~~~~v~~wd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
.+++ +.|+.|.+|.....+++-... . ...+...+|++ +|..|.++|.||.|.+..+...
T Consensus 295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 2333 469999999986555543222 1 23456778887 6999999999999999999743
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=162.18 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=179.9
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (268)
-.++.|++ -|.+||.|..||.+.|||..+...-+.|.+|..+|.+++|+++|++|+|+|+|..+++||+..+.+.+.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 55899985 799999999999999999999887788999999999999999999999999999999999999999999
Q ss_pred eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC-Cccc----EEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372 99 FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS----IRTVAWLHSDQTILSSCTDSGGVRL 172 (268)
Q Consensus 99 ~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~~~~d~~i~i 172 (268)
+....+|..+.|+| +.+.+++.-.+..-.+-++..+.. ..... ..+. -.+..|.+. +.++.+|...|.+.+
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~-g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRR-GKYIITGTSKGKLLV 179 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCC-CCEEEEecCcceEEE
Confidence 99999999999999 344444444444444555433211 11110 0111 112234444 455667777799999
Q ss_pred EeCCCCceEEeecCC--CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCc-------eeeeEEeC-----CCCceeeEEcC
Q 024372 173 WDARSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHF-------GLVKGYNM-----PCNTESASLEP 237 (268)
Q Consensus 173 wd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~-------~~~~~~~~-----~~~~~~~~~~~ 237 (268)
+|..+.+++..+... ..+..+.++..|++++. .+|+.||.++++.- +....+.. +.....++++.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 999999999887643 46899999999999876 57899999997521 11111111 12234566666
Q ss_pred CCCCEEEeccC-CCeEEEEECCCCcEEeec
Q 024372 238 KLGNIFIAGGE-DMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 238 ~~~~~~~~gs~-d~~i~~wd~~~g~~~~~~ 266 (268)
+|.++++|+. --.+|+|+-..|.++.+.
T Consensus 260 -dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 260 -DGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred -CccEEEeccccceeEEEEecCCcceeeee
Confidence 7999888874 457999999999988874
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9e-24 Score=180.62 Aligned_cols=243 Identities=21% Similarity=0.230 Sum_probs=188.4
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCccCcEEEEEe-cCCCcEEEEeeCCCcEE
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCL-DANALFSASGSADFTAK 86 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~~~V~~~~~-~~~~~~l~s~s~D~~v~ 86 (268)
..++.|+.=|+++... .+|+.|+++|.|-+|++|+.+.+ -++.+++.|++=|.++++ .++...+||||-|+.|.
T Consensus 67 asme~HsDWVNDiiL~---~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILC---GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhHhHHhhHHhh---cCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 3456788888888776 47889999999999999999987 578899999999999999 77888899999999999
Q ss_pred EEeCCCCCe--eeee----------ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372 87 LWDALTGDE--KHSF----------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL 154 (268)
Q Consensus 87 iw~~~~~~~--~~~~----------~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 154 (268)
+||++++.. +..+ .+...|.+++.++.+..+++|+..+.+++||.++.+.... +.+|..-|..+..+
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-LrGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-LRGHTDNVRVLLVN 222 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee-eeccccceEEEEEc
Confidence 999987732 2222 3567899999999999999999999999999987654433 44788899999988
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCCCce
Q 024372 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTE 231 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~~~~ 231 (268)
+++..++++ +.||+|++||+...+|+.++..| ..|-++..+|+-..+.+| .|+.|..=|++++ ++...+.-..+..
T Consensus 223 dDGt~~ls~-sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~ 301 (735)
T KOG0308|consen 223 DDGTRLLSA-SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVL 301 (735)
T ss_pred CCCCeEeec-CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchh
Confidence 877666655 55699999999999999998744 458899999998877654 6888998899885 3333333222333
Q ss_pred eeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 232 SASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.....- ...-+-++..|+.|+-|...
T Consensus 302 ~l~~~~-~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 302 KLHLHE-HDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred hhhhcc-ccCCceeeeccccceecCCc
Confidence 333332 23334778888889999653
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-24 Score=187.68 Aligned_cols=231 Identities=20% Similarity=0.310 Sum_probs=190.2
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
.|..-|.++... ..+..+++|+.|..+-+|...+--.+-.|.+|+.+|.++.|+....+++.|+.+|+||+||++++
T Consensus 26 ~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 26 AHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 577777777763 35678999999999999988777666678999999999999999999999999999999999999
Q ss_pred Ceeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE
Q 024372 94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (268)
Q Consensus 94 ~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i 172 (268)
+.++++ .|...+..+.|+|-+.++++|+.|..+++||.+...... ....|...+..+.|.|+|.+ ++.+++|++++|
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~-~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki 180 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH-TYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKI 180 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee-eecCCcceeEEEeecCCCce-eeccCCcceeee
Confidence 887776 488889999999999999999999999999987544433 33447788999999987765 556677899999
Q ss_pred EeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC-CCCceeeEEcCCCCCEEEeccCC
Q 024372 173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 173 wd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~d 249 (268)
||+..|+.+..|+ +.+.+..+.++|..-+++. +.|++|++||+++++.+..-.. ..++.+..|.+ ++..+.+|-..
T Consensus 181 ~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 181 WDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred ecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 9999999999998 5577999999999877775 4689999999998877654432 34556666666 68877777654
Q ss_pred C
Q 024372 250 M 250 (268)
Q Consensus 250 ~ 250 (268)
.
T Consensus 260 s 260 (825)
T KOG0267|consen 260 S 260 (825)
T ss_pred h
Confidence 3
No 118
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.9e-23 Score=166.79 Aligned_cols=170 Identities=23% Similarity=0.381 Sum_probs=143.0
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE---EEeeCccCcEEEEEecCCC-cEEEEeeC
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDANA-LFSASGSA 81 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~s~s~ 81 (268)
+.....+.+|...=.+|+|+|.. .| .|++|---+.|++|...+|.+. ..|.+|+..|-.++|+|.. ..|+|||.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~-~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIK-TG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cCceEEecccCccceeeeccccc-cc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 34445556899999999999954 55 4778888889999999998764 4567899999999999976 57899999
Q ss_pred CCcEEEEeCCCCC---eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC--CCCCeEecCCcccEEEEEEeCC
Q 024372 82 DFTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 82 D~~v~iw~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~ 156 (268)
||+|+|||++.++ ++.+-.|..-|+.++|+..-.+||+|+.||++++||++.- ..+...+..|+.+|+++.|.|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 9999999999884 3444568889999999998889999999999999999753 2345677789999999999998
Q ss_pred CCcEEEEeeCCCeEEEEeCCC
Q 024372 157 DQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~ 177 (268)
....+++++.|++|.|||+..
T Consensus 359 e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCceEEeccCCCcEEEEEeec
Confidence 888888888899999999864
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-22 Score=170.74 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=190.1
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEE
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC 108 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v 108 (268)
.+.||.| ....+.+|+..+++......-+++.|.++.|+++|.+||.|-.+|.|.|||..+.+..+.+. |...|.++
T Consensus 188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 4456544 45677899999998665555568999999999999999999999999999999888777764 67789999
Q ss_pred EECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCC
Q 024372 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETK 187 (268)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~ 187 (268)
+|+ ...+.+|+.++.|..+|++..........+|...|..+.|++++. .+++|+.|+.+.|||....+++.++ +|.
T Consensus 267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccc
Confidence 998 668999999999999999876654444567888999999998764 6777778899999999777776665 567
Q ss_pred CCEEEEEECCCC-cEEEEe---CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEECCCCcE
Q 024372 188 SPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQ 262 (268)
Q Consensus 188 ~~v~~~~~s~~g-~~l~~~---~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~~g~~ 262 (268)
+.|..++|+|-. .+|++| .|+.|++||..++..+........+.++.+.+...+++.+-| .+..|.||+..+.++
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 789999999964 456654 478999999999999988888888899999997777777744 567899999987776
Q ss_pred Eeec
Q 024372 263 IAIT 266 (268)
Q Consensus 263 ~~~~ 266 (268)
+..+
T Consensus 424 ~~~l 427 (484)
T KOG0305|consen 424 VAEL 427 (484)
T ss_pred eeee
Confidence 6654
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.2e-23 Score=169.57 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=166.7
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDAL 91 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~ 91 (268)
.+|+..|.++.|+-. -.+.||+||.|.+|++||+.+|++..++..|.++|.+++|.|.. .+|++||.|++|++.|++
T Consensus 240 ~gHTdavl~Ls~n~~--~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRN--FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccc--cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 479999999999753 46799999999999999999999999999999999999999765 788999999999999998
Q ss_pred C-CCeeeeeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 92 T-GDEKHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 92 ~-~~~~~~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
. ...-..+.....|-.+.|+|. ...++++..||+++.+|++......-....|.++|.+++++...+.++++++.|+.
T Consensus 318 ~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 318 DPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred CccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 4 233445566778889999984 45777888999999999998766666777899999999999999999999999999
Q ss_pred EEEEeCCCCceEEeecC---CCCEEEEEECCCCcEE--EEeCCCeEEEEeCCCceee
Q 024372 170 VRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYI--TTADGSSVKFWDANHFGLV 221 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l--~~~~~~~v~~wd~~~~~~~ 221 (268)
|++|++.--+......+ -+...|.++.|+--++ +++..+.+++||+-+...+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999865443222211 1335677777875443 3455667999998765443
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.1e-23 Score=166.57 Aligned_cols=247 Identities=13% Similarity=0.179 Sum_probs=188.9
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
....+..|.+.|.+|++.. .-+++++.|++++.|...- ..++++-+ +..+..+.-+..+..+||+|. .|-|
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~I 171 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDI 171 (433)
T ss_pred hhheeecccCceeeEEecc-----cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeee
Confidence 3456678999999999963 4678999999999997653 46666654 345666666666777899876 6899
Q ss_pred EeCCCCCeeeeecc-CCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 88 WDALTGDEKHSFEH-KHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 88 w~~~~~~~~~~~~~-~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
||.+...++..+.- ...|.++.|+|-. .+|+++..|+.|.+||++....+..... ....+.|+|+| ....++++.
T Consensus 172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnP-eafnF~~a~ 248 (433)
T KOG0268|consen 172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNP-EAFNFVAAN 248 (433)
T ss_pred cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCc-cccceeecc
Confidence 99998888888774 3568999999954 5777888999999999987654433332 23567899999 556677788
Q ss_pred CCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC--CceeeEEcCCCC
Q 024372 166 DSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC--NTESASLEPKLG 240 (268)
Q Consensus 166 ~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~ 240 (268)
+|..+..+|.|.. +.+..+..+ ..|.+++|||.|+-+++ +-|.+||||..+.+.--..|..+. .+.++-++. +.
T Consensus 249 ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Ds 327 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DS 327 (433)
T ss_pred ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cc
Confidence 9999999999874 455555544 56999999999987665 569999999998765544554432 344555565 68
Q ss_pred CEEEeccCCCeEEEEECCCCcEEeecc
Q 024372 241 NIFIAGGEDMWVHVFDFHTGEQIAITS 267 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g~~~~~~~ 267 (268)
+++++||.|+.|++|..+..+++.+.|
T Consensus 328 kyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred cEEEecCCCcceeeeecchhhhcCCCC
Confidence 999999999999999998888777654
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.6e-23 Score=156.92 Aligned_cols=204 Identities=23% Similarity=0.367 Sum_probs=160.6
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE--EEeeCccCcEEEEEecCCC--cEEEEeeCCCcEE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANA--LFSASGSADFTAK 86 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~--~~l~s~s~D~~v~ 86 (268)
.|.||++||..++|... .-|..||+++.||+++||.-+.|++. .....|++.|.+++|.|.+ ..|+.++.||.|.
T Consensus 51 ~L~Gh~GPVwqv~wahP-k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHP-KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred EecCCCCCeeEEeeccc-ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 45699999999999432 47899999999999999998888653 4556899999999999875 5789999999999
Q ss_pred EEeCCCCC----eeeeeccCCeEEEEEECCC---C-----------CEEEEeeCCCeEEEEECCCCCCCC-eEecCCccc
Q 024372 87 LWDALTGD----EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGS 147 (268)
Q Consensus 87 iw~~~~~~----~~~~~~~~~~v~~v~~~~~---~-----------~~l~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~~ 147 (268)
|.++.... .+....|.-.|++++|.|- | +.|++|+-|+.+++|+...+.-.. ..+..|.+.
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 99886542 1223347778999999885 4 679999999999999987653332 336678999
Q ss_pred EEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCC-c-eEEeecC--CCCEEEEEECCCCcEEEEe-CCCeEEEEeC
Q 024372 148 IRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG-K-IVQTLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDA 215 (268)
Q Consensus 148 v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~-~-~~~~~~~--~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~ 215 (268)
|+.++|.|..+ ..+++|+.||++.||..+.. + -..++.. ...+..+.||+.|++|+.+ .|..|.+|.-
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 99999998764 47899999999999987632 1 1222222 3458999999999999754 6789999974
No 123
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-21 Score=149.36 Aligned_cols=206 Identities=20% Similarity=0.296 Sum_probs=166.7
Q ss_pred eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (268)
Q Consensus 57 ~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (268)
+.||+.++..+.|..+|.+|.|++.|.++.+|-..+++.+-++. |...|.++..+.+.+.+++|+.|.++++||+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 67999999999999999999999999999999998888888875 99999999999999999999999999999999876
Q ss_pred CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCC-------CCceEEeec-CCCCEEEEEECCCCcEE
Q 024372 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDAR-------SGKIVQTLE-TKSPVTSAEVSRDGRYI 202 (268)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~-------~~~~~~~~~-~~~~v~~~~~s~~g~~l 202 (268)
.+.... ...+|..+.|+..+ ++++.++++ +.|.++|++ ..+++..+. ....+..+.|.|-+.++
T Consensus 86 ~la~~k--~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 86 QLATWK--TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred EEEEee--cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 543332 34578889988755 555555554 579999998 445555554 44668999999999998
Q ss_pred EEe-CCCeEEEEeCCCc-eeeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 203 TTA-DGSSVKFWDANHF-GLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 203 ~~~-~~~~v~~wd~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+++ +++.|..||++++ +.++.-..+ ..+..+.+++ +..+|++||.|.+.++||+.+=+.+..|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEe
Confidence 775 6899999999986 444443332 3455666676 6999999999999999999877666654
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=7.3e-22 Score=168.72 Aligned_cols=238 Identities=18% Similarity=0.270 Sum_probs=173.7
Q ss_pred eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe------EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 94 (268)
+..|++-....+.|+.+-.||.|.++|...... +..+..|.+.|..+.|.|....|++++.|.++++||+++..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 478877666788999999999999999876532 35667899999999999977889999999999999999888
Q ss_pred eeee---eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC-----------------------eEe---cCC
Q 024372 95 EKHS---FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP-----------------------REV---GNS 144 (268)
Q Consensus 95 ~~~~---~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~-----------------------~~~---~~~ 144 (268)
+... +.|...|.+++|+| +...|++|+.|+.|.+||++...... +.. ..+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 6554 57999999999999 66789999999999999986422000 000 011
Q ss_pred cccEEE---EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--------C----CCCEEEEEECCCCcEEE-EeCCC
Q 024372 145 SGSIRT---VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------T----KSPVTSAEVSRDGRYIT-TADGS 208 (268)
Q Consensus 145 ~~~v~~---~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--------~----~~~v~~~~~s~~g~~l~-~~~~~ 208 (268)
...+.. +.++.+...++++|..|+.||+||+|+..+....+ . ...+.++.....|.++. +..|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 122333 44556666666666658999999999876543221 1 12466788888888765 45799
Q ss_pred eEEEEeCCCce--eeeEEeCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 209 SVKFWDANHFG--LVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 209 ~v~~wd~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
.|.+|++.... ++..|..+.. ......++ ++.++++|+.|...++|.+.+
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecC
Confidence 99999997653 3333433221 22334445 799999999999999999864
No 125
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.6e-23 Score=185.48 Aligned_cols=243 Identities=20% Similarity=0.287 Sum_probs=179.1
Q ss_pred eEEEecCCCCCcEEEEE----------eCCCCeEEeeC--CCCC----eEEEeeCccCcEEEEEecCCCcE----EEEee
Q 024372 21 DLFYSPITPDGFFLVSA----------SKDSSPMLRNG--ETGD----WIGTFEGHKGAVWSCCLDANALF----SASGS 80 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~----------s~d~~i~iw~~--~~~~----~~~~~~~h~~~V~~~~~~~~~~~----l~s~s 80 (268)
.++|+|..+ .+||+| +.+.++-+|.+ .+.+ .+..+. -..+-+.++|.+.+.. +|.|.
T Consensus 11 ~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ 87 (1049)
T KOG0307|consen 11 TFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGL 87 (1049)
T ss_pred eEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccc
Confidence 456776332 255555 44555555533 2222 333332 2345677888877655 88999
Q ss_pred CCCcEEEEeCCCC---Ce---eee-eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeE-ecCCcccEEEE
Q 024372 81 ADFTAKLWDALTG---DE---KHS-FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE-VGNSSGSIRTV 151 (268)
Q Consensus 81 ~D~~v~iw~~~~~---~~---~~~-~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~~v~~~ 151 (268)
.||.|.+||...- .. +.+ -.|...|+.+.|++ ++++||+|+.||+|.+||++..+..... .....+.|.++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999998652 21 112 24888999999999 5569999999999999999875543322 11245689999
Q ss_pred EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC---CEEEEEECCCC--cEEEEeC-C--CeEEEEeCCCc-eeee
Q 024372 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS---PVTSAEVSRDG--RYITTAD-G--SSVKFWDANHF-GLVK 222 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~---~v~~~~~s~~g--~~l~~~~-~--~~v~~wd~~~~-~~~~ 222 (268)
+|+...+++|++++.+|++.|||+|..+.+-.+..+. .+..++|+|+. +++++++ | -.|.+||+|.- ..++
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 9999999999999999999999999988877665443 38899999997 3444443 3 36999999874 5677
Q ss_pred EEeC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 223 GYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 223 ~~~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
.+.. ..++.+..|++.+.+++++++.|+.|.+||..+||.+..+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 7754 4568899999988899999999999999999999998764
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2e-21 Score=168.09 Aligned_cols=261 Identities=17% Similarity=0.223 Sum_probs=197.3
Q ss_pred cceeeecEEeeecCCCeeeEEEec---------CCCCCcEEEEEeCCCCeEEeeCCCCC---e----------EE-----
Q 024372 3 KRKVAVPLVCHGHSRPVVDLFYSP---------ITPDGFFLVSASKDSSPMLRNGETGD---W----------IG----- 55 (268)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~~~f~~---------~~~dg~~l~s~s~d~~i~iw~~~~~~---~----------~~----- 55 (268)
-.|+.+--++.-|+..|+++.--| --|-+. +.++|.|++||+|+..-+. . +.
T Consensus 356 ~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d 434 (1080)
T KOG1408|consen 356 VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYED 434 (1080)
T ss_pred cccccceeeeeeccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCcccc
Confidence 344555555567999999887765 113343 7899999999999876421 0 00
Q ss_pred -------------------EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC---
Q 024372 56 -------------------TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--- 112 (268)
Q Consensus 56 -------------------~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~--- 112 (268)
..-+-.-.+++++++|++++||+|..-|+++++++.........+ |...|.|+.|+.
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~ 514 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL 514 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh
Confidence 001123468999999999999999999999999998766655554 889999999976
Q ss_pred CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc-EEEEeeCCCeEEEEeCCC----CceEEe---e
Q 024372 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT-ILSSCTDSGGVRLWDARS----GKIVQT---L 184 (268)
Q Consensus 113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~d~~i~iwd~~~----~~~~~~---~ 184 (268)
..++||+++.|+.|++||+.....+.+....|...|+++.|...+.+ -+++|+.|+.| .|+... |..... .
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccc
Confidence 45899999999999999997665666777788899999999876643 46677777665 445432 222211 1
Q ss_pred cCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC----CceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 185 ETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 185 ~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
..+..+..+++.|+.+++++ ..|+.|||||++.++.++.|.... ..+.+...| +|-|+++...|+++.++|+.+
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEecc
Confidence 12456899999999998775 589999999999999999997643 245566666 799999999999999999999
Q ss_pred CcEEeec
Q 024372 260 GEQIAIT 266 (268)
Q Consensus 260 g~~~~~~ 266 (268)
||.++.+
T Consensus 673 gEcvA~m 679 (1080)
T KOG1408|consen 673 GECVAQM 679 (1080)
T ss_pred chhhhhh
Confidence 9998764
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=169.79 Aligned_cols=240 Identities=16% Similarity=0.213 Sum_probs=191.6
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC-C--CcEEEEeeCCCcEEEEeC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-N--ALFSASGSADFTAKLWDA 90 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~-~--~~~l~s~s~D~~v~iw~~ 90 (268)
+-.-.|++++.+ |+|++||+|-.-|+++|+++..-+++.+++.|+..|.++.|+. + .++||++|+|..|-++|+
T Consensus 457 d~r~G~R~~~vS---p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 457 DSRFGFRALAVS---PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred CcccceEEEEEC---CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 445678999887 5999999999999999999999999999999999999999983 2 467899999999999999
Q ss_pred CCCC-eeeee-ccCCeEEEEEECCCC--CEEEEeeCCCeEEEEECCCCCCCCeEecC-----CcccEEEEEEeCCCCcEE
Q 024372 91 LTGD-EKHSF-EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 91 ~~~~-~~~~~-~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~ 161 (268)
..+- .+.++ .|...|+++.|-.++ ...++++.|+.| +|+.......-..+.. ....+..++..|.-++++
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 7543 33444 488899999997766 677899999876 4554421111122211 134566777777766666
Q ss_pred EEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEc
Q 024372 162 SSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE 236 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 236 (268)
++| .|+.|+|||+++++..+.|++ .+....+...|.|.|++++ +|+++.++|.-.++++.....+........+
T Consensus 613 t~c-QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 613 TVC-QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EEe-cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee
Confidence 555 569999999999999999974 2567789999999999876 7999999999999999888777776666666
Q ss_pred CCCCCEEEeccCCCeEEEEECC
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.++-+.|++.+.|+.|.+|.+.
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cccchhheeecCCceEEEEECc
Confidence 6678999999999999999974
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-20 Score=155.79 Aligned_cols=233 Identities=16% Similarity=0.190 Sum_probs=173.4
Q ss_pred cEEEEEeCCC-CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEE
Q 024372 32 FFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA 109 (268)
Q Consensus 32 ~~l~s~s~d~-~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~ 109 (268)
.|++++..-+ .+.+|.+.........---.++|.+++-+|.|.+++.|.--+.+++|.+.+|..+..+. |-..|+|+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 3555555444 44567766554333111135789999999999999888899999999999999877774 778999999
Q ss_pred ECCCCCEEEEeeCCCeEEEEECCC-------C-CCCCeEecCCcccEEEEEEeCCCC-cEEEEeeCCCeEEEEeCCCCce
Q 024372 110 FSEDTHLLLTGGFEKILRIFDLNR-------P-DAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKI 180 (268)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~~~d~~~-------~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~iwd~~~~~~ 180 (268)
|+.|+..++||+.||.+.+|++.. . ..+...+..|.-+|+.+...+.+. ..+.+.+.|+++|+||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 999999999999999999998631 1 122345567777888877654422 2466677889999999999999
Q ss_pred EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCce----------------eeeEEeCCC---CceeeEEcCCCC
Q 024372 181 VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG----------------LVKGYNMPC---NTESASLEPKLG 240 (268)
Q Consensus 181 ~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~----------------~~~~~~~~~---~~~~~~~~~~~~ 240 (268)
+.++.....+.+++++|.++.+..| ++|.|-+.++.+.. .++.+..+. .+.+++++. +|
T Consensus 211 Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dg 289 (476)
T KOG0646|consen 211 LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DG 289 (476)
T ss_pred eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Cc
Confidence 9988877889999999999877654 67887776653221 122233333 345566666 79
Q ss_pred CEEEeccCCCeEEEEECCCCcEEee
Q 024372 241 NIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.+|++|+.|++|.+||+.+-|.+.+
T Consensus 290 tlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cEEEeeCCCCCEEEEecchHHHHHH
Confidence 9999999999999999987776654
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5e-22 Score=172.92 Aligned_cols=185 Identities=22% Similarity=0.310 Sum_probs=150.7
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-CcEEEEeeCCCcEEEEe
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD 89 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~iw~ 89 (268)
+|-.|+..++.+.|++..| ++|++||+||+|+.||.+..+-..++.+....|+.|.|+|. +..++++...|.+++||
T Consensus 128 ~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD 205 (839)
T ss_pred HhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence 4457999999999999766 59999999999999999999988899999999999999975 46789999999999999
Q ss_pred CCCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-
Q 024372 90 ALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD- 166 (268)
Q Consensus 90 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~- 166 (268)
+..... +....|..+|.|+.|+|++.+||||+.|++|++||+.+.+.......+...++.++.|-|..++.+++|+-
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence 975442 23335999999999999999999999999999999986554433333456789999999999888887753
Q ss_pred -CCeEEEEeCCCCc-eEEeec-CCCCEEEEEECC
Q 024372 167 -SGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSR 197 (268)
Q Consensus 167 -d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~s~ 197 (268)
|-.|+|||++--- +..++. +...+..++|..
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceEEEEeeccccccceeeeccCccccceeccC
Confidence 4589999997543 344554 444467777765
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.4e-20 Score=145.23 Aligned_cols=240 Identities=18% Similarity=0.342 Sum_probs=171.9
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C--CeEEEeeCccCcEEEEEecC--CCcEEEEeeCCCcEE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G--DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK 86 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~--~~~~l~s~s~D~~v~ 86 (268)
.+|.+-|.++.|.+ .|+.+|+||.|++++|||..+ + .+....+.|.+.|..+.|.+ -|+.+|++|.|++++
T Consensus 10 s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 48999999999984 899999999999999999644 3 36677899999999999853 478999999999999
Q ss_pred EEeCCCCC---------eeeee-ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCC-----CeEe-------c
Q 024372 87 LWDALTGD---------EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-----PREV-------G 142 (268)
Q Consensus 87 iw~~~~~~---------~~~~~-~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~-----~~~~-------~ 142 (268)
||.-.... ...++ .....|+.|+|.| -|..+++++.||.+|+|+...+-.. ..++ +
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99752111 11222 2456799999999 5789999999999999987543211 1111 1
Q ss_pred CCcccEEEEEEeCCC--CcEEEEeeCC-----CeEEEEeCCC-C-c--eEEeec-CCCCEEEEEECCC-C---cEEEEe-
Q 024372 143 NSSGSIRTVAWLHSD--QTILSSCTDS-----GGVRLWDARS-G-K--IVQTLE-TKSPVTSAEVSRD-G---RYITTA- 205 (268)
Q Consensus 143 ~~~~~v~~~~~~~~~--~~~~~~~~~d-----~~i~iwd~~~-~-~--~~~~~~-~~~~v~~~~~s~~-g---~~l~~~- 205 (268)
.+..+..|+.|++.. .-+++.|+++ +.++||.-.. + + .+.++. +..+|..++|.|+ | .+|+.+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 244567889998643 2356666664 4799997643 2 2 233443 4578999999997 4 245554
Q ss_pred CCCeEEEEeCCCc--------------------eeeeEEe-CCCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 206 DGSSVKFWDANHF--------------------GLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 206 ~~~~v~~wd~~~~--------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
.|| |+||.++.- +.+..+. +++......+.- .|..|++.|.||.||+|..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 455 999998631 1122232 233566777776 6999999999999999975
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=151.44 Aligned_cols=193 Identities=22% Similarity=0.351 Sum_probs=149.2
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCC
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADF 83 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~ 83 (268)
...|.....|++||.+++|+ .||..+++|+.|+++++||+.+++ +..+..|.++|.+|.|-+... .|+|||+|+
T Consensus 62 ~~~~ka~~~~~~PvL~v~Ws---ddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK 137 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWS---DDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK 137 (347)
T ss_pred cccchhhhccCCCeEEEEEc---cCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEeccccc
Confidence 34566677899999999998 599999999999999999999995 557888999999999976554 789999999
Q ss_pred cEEEEeCCCCCeeeeecc------------------------------------------CCeEEEEEECCCCCEEEEee
Q 024372 84 TAKLWDALTGDEKHSFEH------------------------------------------KHIVRACAFSEDTHLLLTGG 121 (268)
Q Consensus 84 ~v~iw~~~~~~~~~~~~~------------------------------------------~~~v~~v~~~~~~~~l~s~~ 121 (268)
+||+||.+...+..++.. +-.++|++..++....+.|+
T Consensus 138 TlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 138 TLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred ceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 999999976554333211 12377888877777778888
Q ss_pred CCCeEEEEECCCCCC-CCeEecCCc---------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCE
Q 024372 122 FEKILRIFDLNRPDA-PPREVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPV 190 (268)
Q Consensus 122 ~d~~i~~~d~~~~~~-~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v 190 (268)
-.|.+-+..++.+.. ....+..|+ -.|+.|+|.|..+.++++|+ ||+..+||-.....+++.+ +..++
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC-CceEEEecchhhhhhhccCcCCCcc
Confidence 888877777665322 122333333 25778999998888777765 5999999998877777765 45679
Q ss_pred EEEEECCCCcEEE
Q 024372 191 TSAEVSRDGRYIT 203 (268)
Q Consensus 191 ~~~~~s~~g~~l~ 203 (268)
.++.|+.+|.+++
T Consensus 297 tcc~fn~~G~ifa 309 (347)
T KOG0647|consen 297 TCCSFNRNGSIFA 309 (347)
T ss_pred ceeEecCCCCEEE
Confidence 9999999999875
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-21 Score=159.20 Aligned_cols=204 Identities=17% Similarity=0.221 Sum_probs=160.7
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC---
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT--- 92 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~--- 92 (268)
.++|.+++-+ |.|.+|+.|+..+.+.+|.+.+|+++..+++|-..|.++.|+.|+.++.|||.||.|.+|.+.+
T Consensus 81 Pg~v~al~s~---n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASS---NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecC---CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 4588899776 5899999999999999999999999999999999999999999999999999999999998732
Q ss_pred ------CCeeeee-ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372 93 ------GDEKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 93 ------~~~~~~~-~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (268)
-.+.+.+ .|.-+|+.+...+ -...++|++.|+++++||+..+........ ...+.+++..|.+..++ .
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~~y-i 234 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERVVY-I 234 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccEEE-e
Confidence 2234444 3777898877655 346899999999999999987655444332 34788888888766555 4
Q ss_pred eeCCCeEEEEeCCCCc----------------eEEeec-CCC--CEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeE
Q 024372 164 CTDSGGVRLWDARSGK----------------IVQTLE-TKS--PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG 223 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~----------------~~~~~~-~~~--~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~ 223 (268)
|+.+|.|.+.++.+-. .+..+. +.. +|.|++++-||.+|++| .|+.|++||+....++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 5667999888764321 122232 223 79999999999999886 589999999988777776
Q ss_pred Ee
Q 024372 224 YN 225 (268)
Q Consensus 224 ~~ 225 (268)
..
T Consensus 315 l~ 316 (476)
T KOG0646|consen 315 LQ 316 (476)
T ss_pred Hh
Confidence 65
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.8e-21 Score=164.36 Aligned_cols=244 Identities=20% Similarity=0.271 Sum_probs=173.4
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEe
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~ 89 (268)
..|.+.|-++.|.| .-..|++++.|.+++.||+.+.++++. +-||++.|.+++|.+.. ..|++|++|+.+.|||
T Consensus 97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 47999999999986 456899999999999999999999887 88999999999999876 5689999999999999
Q ss_pred CCCCCeee------------------------ee----ccCCeEEE---EEECCCCCEEEEeeC-CCeEEEEECCCCCCC
Q 024372 90 ALTGDEKH------------------------SF----EHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP 137 (268)
Q Consensus 90 ~~~~~~~~------------------------~~----~~~~~v~~---v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~ 137 (268)
+....... .. .+...+.. +.+..|...||+++. |+.|++||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 85332000 00 02222333 456678889999887 999999999754321
Q ss_pred CeE-------ecCC---cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce--EEeecCC---CCEEEEEECCCCcEE
Q 024372 138 PRE-------VGNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLETK---SPVTSAEVSRDGRYI 202 (268)
Q Consensus 138 ~~~-------~~~~---~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~---~~v~~~~~s~~g~~l 202 (268)
.+. ..-+ .-.+.++.....|..++++|. |+.|..|++++... +..+.++ ..-..-..+|++.++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 111 0011 123556666666778899988 59999999987543 3344332 223455679999998
Q ss_pred EEe-CCCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 203 TTA-DGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 203 ~~~-~~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+++ .|....+|.+.+-+. ...+..+ ..+...++.+..-.-++++++|..+++|++.+|
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 875 588999999876432 2222222 234566666544555788899999999998654
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=148.72 Aligned_cols=238 Identities=20% Similarity=0.276 Sum_probs=170.3
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC------------------------------------eEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------------------------------------WIG 55 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~------------------------------------~~~ 55 (268)
|.||.+.|++++|+ .||++||+++.|++|++|++.+-+ .++
T Consensus 82 LKgH~~~vt~~~Fs---SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFS---SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhccCCceeeeEEc---CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45999999999998 499999999999999999875311 000
Q ss_pred Ee-----------------------eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc-CCeEEEEEEC
Q 024372 56 TF-----------------------EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFS 111 (268)
Q Consensus 56 ~~-----------------------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~~v~~v~~~ 111 (268)
-+ +.|+..|-.+-...++.+++|++.|-.|-+|++. ++.+..+.. ...-...+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 00 1133344445555677899999999999999998 777666643 3345567889
Q ss_pred CCCCEEEEeeCCCeEEEEECC---CCC----CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC----c-
Q 024372 112 EDTHLLLTGGFEKILRIFDLN---RPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG----K- 179 (268)
Q Consensus 112 ~~~~~l~s~~~d~~i~~~d~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~- 179 (268)
|+|++++++++--.+++|.+- .++ .....+.+|+..|..++|+++... +++.+.||++||||+.-. +
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEecCCC
Confidence 999999999999999999852 111 122345678899999999887665 455578899999998532 1
Q ss_pred --eEEeec-----CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe-CCC-CceeeEEcCCCCCEEEeccCCC
Q 024372 180 --IVQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPC-NTESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 180 --~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~gs~d~ 250 (268)
.+++.. ..+....+.++|+|+.|+.+.+..+.++..+.++....+. .+. .+.++++.+ +|++++++|+ +
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeecc-e
Confidence 122221 1123458999999999999988899999988765544443 222 345666666 6998888775 4
Q ss_pred eEEEEE
Q 024372 251 WVHVFD 256 (268)
Q Consensus 251 ~i~~wd 256 (268)
.+++..
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 566665
No 135
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.2e-21 Score=163.70 Aligned_cols=246 Identities=19% Similarity=0.250 Sum_probs=180.1
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--------CCeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------GDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~ 81 (268)
+.+..|...|++++|.|..| .|++|+.|+++++|++++ -+.+.+|++|+++|.++++++++..+.||+.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 35568999999999998776 699999999999999833 2578999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCe-----------eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccE
Q 024372 82 DFTAKLWDALTGDE-----------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSI 148 (268)
Q Consensus 82 D~~v~iw~~~~~~~-----------~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v 148 (268)
||+|+.|++-.+.- -....|.+.|..+.+|+....|++++.||++++|+...... ..++. ..+.-
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~P 442 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYP 442 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCc
Confidence 99999997642220 11224888999999999888899999999999998754332 22221 11223
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--------CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCce
Q 024372 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG 219 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~ 219 (268)
..+.+-.......+++..-+.-.+.|...+..+..+... ..++.+..+|++.+.++ ..++.|+++|..++.
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 445544333233333223244555566666666655421 34677888898877665 578999999999988
Q ss_pred eeeEEeCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372 220 LVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~ 261 (268)
++..-..+ ....++++.+ .|-+|++|+.|+.+++|+...-.
T Consensus 523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cchheeeccceecceeecC-CCceEEeecCCceeehhhccchh
Confidence 87655443 3455666666 69999999999999999875433
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=2.9e-21 Score=153.55 Aligned_cols=241 Identities=16% Similarity=0.238 Sum_probs=178.7
Q ss_pred ecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCC
Q 024372 14 GHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDAL 91 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~ 91 (268)
.|.+....++|.=-+.+ .-+||.|+.-|.|+|-|+.++++...+.+|.+.|..+.+.|+. ++++++|.|++||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 48888888888653332 4578888999999999999999999999999999999999976 678999999999999999
Q ss_pred CCCeeeeec----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC---------------------------CeE
Q 024372 92 TGDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---------------------------PRE 140 (268)
Q Consensus 92 ~~~~~~~~~----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---------------------------~~~ 140 (268)
+..++..+. |...|.++.|++++..+++++.|..+++|+++.++.. ...
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999999884 8899999999999999999999999999998732100 001
Q ss_pred ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC-CCCceE-------------EeecC-CCCE--EEEEECCCCcEEE
Q 024372 141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIV-------------QTLET-KSPV--TSAEVSRDGRYIT 203 (268)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~-------------~~~~~-~~~v--~~~~~s~~g~~l~ 203 (268)
...|..+|-|+.|.- ..+++- +-++.|..|-. +-++.+ ..++. ...+ ..-+|.|-+++|+
T Consensus 247 ~diHrnyVDCvrw~g--d~ilSk-scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFG--DFILSK-SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHHh--hheeec-ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 224566677777763 344444 44589999987 222222 22221 1222 3445667788888
Q ss_pred Ee-CCCeEEEEeCCCceee--eEEeCC---CCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 204 TA-DGSSVKFWDANHFGLV--KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 204 ~~-~~~~v~~wd~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.+ ..+.|.+||+++.++. .++..+ ..+...+++ .++++|+...+|+.|--||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEee
Confidence 76 5789999999887653 222221 123344444 479999999999999999853
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-22 Score=178.18 Aligned_cols=247 Identities=15% Similarity=0.218 Sum_probs=191.9
Q ss_pred ecCCCeeeEEEecCCCC-CcEEEEEeCCCCeEEeeCCC---C---CeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcE
Q 024372 14 GHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGET---G---DWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTA 85 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~d-g~~l~s~s~d~~i~iw~~~~---~---~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v 85 (268)
.-....+.|+|.+.-.+ --++|.|..||+|.+||... + +.+.+++.|++.|+.+.|.+... .||+|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 34557889999863211 01699999999999998765 2 35778889999999999998775 89999999999
Q ss_pred EEEeCCCCCeeeee---ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC-CcccEEEEEEeCCCCcE
Q 024372 86 KLWDALTGDEKHSF---EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTI 160 (268)
Q Consensus 86 ~iw~~~~~~~~~~~---~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 160 (268)
.|||++..+.-.++ ...+.|.+++|+. ...+|++++.++.+.+||++..+..+..... ....+..++|.|++...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99999875544444 2456799999988 4568999999999999999865433332222 22457789999998876
Q ss_pred EEEeeCCC---eEEEEeCCCC-ceEEeecCC-CCEEEEEECCCC-cEEE-EeCCCeEEEEeCCCceeeeEEeCCCC-cee
Q 024372 161 LSSCTDSG---GVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNMPCN-TES 232 (268)
Q Consensus 161 ~~~~~~d~---~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g-~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~ 232 (268)
++++++|. .|.+||+|-. ..++++++| ..+.++.|++.+ ++++ ++-|+.|.+|+.++++.+..+....+ ...
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 66665554 6999999864 457777654 559999999977 6655 45789999999999999888876444 457
Q ss_pred eEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+.|++.+...|++++-|+.|.+|.+..+
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecC
Confidence 7888988889999999999999998643
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.4e-20 Score=152.09 Aligned_cols=196 Identities=14% Similarity=0.213 Sum_probs=155.9
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee--CCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL 91 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~--~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~ 91 (268)
-.++|+++.|+|.. ..|++|+.|++++||. .+...++..+.--+-+|.+++|.|+|. .+.++++-...+.||+.
T Consensus 212 s~~~I~sv~FHp~~---plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA---PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCC---ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 34689999999855 4999999999999984 455667777776778999999999998 88999999999999998
Q ss_pred CCCeeeee---ccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 92 TGDEKHSF---EHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 92 ~~~~~~~~---~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
+.+....- .++ ..+.....++++++++..+..|.|.+....+.+.. ..+ .-.+.+..+.|+.++..++++|++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli-~s~-KieG~v~~~~fsSdsk~l~~~~~~- 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI-TSF-KIEGVVSDFTFSSDSKELLASGGT- 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh-hee-eeccEEeeEEEecCCcEEEEEcCC-
Confidence 87753322 122 24566677999999999999999999887655433 222 235788999999888777776655
Q ss_pred CeEEEEeCCCCceEEeecCCCC--EEEEEECCCCcEEEEeCC-CeEEEEeCC
Q 024372 168 GGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYITTADG-SSVKFWDAN 216 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~-~~v~~wd~~ 216 (268)
|.|.+||+++..+++.+...+. -.+++.+++|.++++|++ |.|.|||..
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 9999999999999999875544 467888899999998764 889999953
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=2.7e-21 Score=161.40 Aligned_cols=237 Identities=15% Similarity=0.188 Sum_probs=184.5
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
.-..-|+++... |||+.|++|+.-.++.|||+..... ...+..-....++++.+||.+...++..||.|.|||+.
T Consensus 463 ~rdnyiRSckL~---pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 463 NRDNYIRSCKLL---PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred CcccceeeeEec---CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 455677888777 5999999999999999999876542 33444334567788999999998899999999999999
Q ss_pred CCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
+...++.+. |.+.+.|+..+++|..|-||+-|+++|.||++.+....+. ....-|.++.++|.+.+++++ =..+.+
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavG-Mens~v 616 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVG-MENSNV 616 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeee-cccCcE
Confidence 988888875 8999999999999999999999999999999876543322 223468889999999886654 556788
Q ss_pred EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 249 (268)
.+..+..-+..+...+..-|.++.|++.|+++++ +-|..+..|..-.+..+....-.+.+.++.++. +++++||||.|
T Consensus 617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~-ddkyIVTGSGd 695 (705)
T KOG0639|consen 617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF-DDKYIVTGSGD 695 (705)
T ss_pred EEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc-CceEEEecCCC
Confidence 8877665444443445556999999999999876 568889999987664443222334456677776 69999999999
Q ss_pred CeEEEEEC
Q 024372 250 MWVHVFDF 257 (268)
Q Consensus 250 ~~i~~wd~ 257 (268)
...-||.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99999875
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=8.7e-20 Score=145.03 Aligned_cols=243 Identities=24% Similarity=0.348 Sum_probs=178.0
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----C-C------eEEEeeCcc-CcEEEEEec-------CCCcEEE
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G-D------WIGTFEGHK-GAVWSCCLD-------ANALFSA 77 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~-~------~~~~~~~h~-~~V~~~~~~-------~~~~~l~ 77 (268)
...++.|+ |||..+++-+.|..+.+|++-. + . ...+++-.+ .-|+..+|- |+..++|
T Consensus 51 f~kgckWS---PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 51 FLKGCKWS---PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhccceeC---CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 34467777 5999999999999999996521 1 1 111222222 346666653 6778899
Q ss_pred EeeCCCcEEEEeCCCCCeeeeec---cCCe---EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe---E----ecCC
Q 024372 78 SGSADFTAKLWDALTGDEKHSFE---HKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---E----VGNS 144 (268)
Q Consensus 78 s~s~D~~v~iw~~~~~~~~~~~~---~~~~---v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~---~----~~~~ 144 (268)
+.++|.-|.+||..+++.+..+. |.+. ..+++|+|||..|++ ++.++|++||+..+..... . ....
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999999999999877664 5554 458999999999875 5689999999843322211 1 1123
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCcee-
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGL- 220 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~- 220 (268)
.+-+.+++++|.+..+++.++..+.+-|+.-..+++++.+. +.+.|..+.|.++|+.+.+++ +..|..||+|..+-
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 56788999999998888899888899999888888888775 456799999999998887764 67999999987542
Q ss_pred eeEEeCC---CC-ceeeEEcCCCCCEEEeccCCCeEEEEECCC-CcEEee
Q 024372 221 VKGYNMP---CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIAI 265 (268)
Q Consensus 221 ~~~~~~~---~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~-g~~~~~ 265 (268)
+..+..+ .+ .+.+.+.| .+++|++|+.||.|++||.+. |+++.+
T Consensus 287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv 335 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSV 335 (406)
T ss_pred hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccc
Confidence 2222211 12 22344445 699999999999999999987 776655
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.6e-19 Score=154.09 Aligned_cols=240 Identities=17% Similarity=0.248 Sum_probs=185.6
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccC-cEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
-..+|.++||+. +.+.||.+=.||.|.||++..+= +...+.++++ .|..++|.+.+ .|.|.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEeccc
Confidence 356899999985 44569999999999999998864 3456677755 79999999654 566888999999999999
Q ss_pred CCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 93 GDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 93 ~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+.+.... ....|.+++.+|.+..++.|+.||.+..++.+.+..... .+...++.+.+++|.+.+..++ +|+.||.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~I 178 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVI 178 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceE
Confidence 99988876 456899999999999999999999888888764432222 2334458899999998876544 56677999
Q ss_pred EEEeCCCCceEEeecC------C-CC--EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC-CCceeeEEcCCCC
Q 024372 171 RLWDARSGKIVQTLET------K-SP--VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLG 240 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~------~-~~--v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~ 240 (268)
++||+.++..++.... + .+ |-++.+-.++.++++.+-|+|.+||-..+.+++.+..+ ....+++..+ .+
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~ 257 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE 257 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence 9999999988773221 1 12 56777778886665555699999999999888888654 4555666655 57
Q ss_pred CEEEeccCCCeEEEEECCCC
Q 024372 241 NIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g 260 (268)
++++++|.|+.|..|...++
T Consensus 258 d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CeEEEccCCCceEEEEecCC
Confidence 89999999999988876544
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=5.4e-21 Score=159.63 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=187.2
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
..|-+-|.++..+. ..+++.||+. |-|+|||+.... .+..|.. ..+-+++|...||++-|.+|+.-.++-|
T Consensus 416 L~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 37999999998874 4568888876 567999987642 3444443 3467999999999999999999999999
Q ss_pred EeCCCCCeeeeeccC---CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 88 WDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 88 w~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
||+.........+.. -....++.+||.+++++++.||.|.+||+... ...+.+.+|.+...||..++++..+ -+|
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtkl-WTG 569 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKL-WTG 569 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCcee-ecC
Confidence 999776554433322 23567889999999999999999999999864 4567777888899999998877664 556
Q ss_pred eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (268)
+-|++||-||+|+++.++.......|.++-.+|++.+++.+ +++.+.+-....-.......+.+-+.++-|.+ .|++|
T Consensus 570 GlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwf 648 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWF 648 (705)
T ss_pred CCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCcee
Confidence 67799999999999998888877889999999999999877 66778777664432222122222233444555 79999
Q ss_pred EeccCCCeEEEEECCCCcEE
Q 024372 244 IAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~ 263 (268)
++-|.|..+-.|.+--|..|
T Consensus 649 vStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred eecCchhhhhhccCccccce
Confidence 99999999999998656554
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=5.3e-20 Score=151.99 Aligned_cols=252 Identities=18% Similarity=0.200 Sum_probs=183.0
Q ss_pred cceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGS 80 (268)
Q Consensus 3 ~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s 80 (268)
-++.....++..|..+|.++.|+|..+ .++.+.|.||+|++-|.+.+. .+..+..-......+.|+.....++.+.
T Consensus 221 ~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 221 EKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred CCccCceEEeccCCccccceEecCCCh--hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence 345566677889999999999999644 578899999999999998874 3434433445566777877777677776
Q ss_pred CCCcEEEEeCCCCCeee-ee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC---eEecCCcccEEEEEEe
Q 024372 81 ADFTAKLWDALTGDEKH-SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWL 154 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~-~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~ 154 (268)
.=|...+||..++.... .+ .|+..|..++++| ...+++|++.|++.++||++.-.... -....|.-.|.+..|+
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 66689999998876522 22 3777999999999 66789999999999999987422211 2234677899999999
Q ss_pred CCCCcEEEEeeCCCeEEEEeCC----CCceEEeecCCC------CEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeE
Q 024372 155 HSDQTILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG 223 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~------~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~ 223 (268)
|.++.++.+|- |++|||||.. .-+...++.|.. ....+.|.|+..+++.+. -+.|-++|-...+.+..
T Consensus 379 Ps~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 379 PSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred CCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 99999777765 5899999983 344445554432 245688999999888774 57899999888776666
Q ss_pred EeCCC--Cceee-EEcCCCCCEEEe-ccCCCeEEEEECC
Q 024372 224 YNMPC--NTESA-SLEPKLGNIFIA-GGEDMWVHVFDFH 258 (268)
Q Consensus 224 ~~~~~--~~~~~-~~~~~~~~~~~~-gs~d~~i~~wd~~ 258 (268)
+..+. .+.++ .++| .+..+++ |+.-|.|+||--+
T Consensus 458 l~~P~~~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 458 LHDPESSTIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCccccccccceeecc-cccceeccCCccceEEEEecC
Confidence 54432 23333 4455 5664555 5568899999644
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.7e-20 Score=154.49 Aligned_cols=243 Identities=14% Similarity=0.232 Sum_probs=182.2
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEee--CCCCC--eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRN--GETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~--~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
..+.++.|+. ..--..|+.+.|+.+++|. ..+++ +++.+.+. .-.+++....+.++++|+..++|+|||+..
T Consensus 35 pg~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 35 PGDFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred Ccceeeeccc--cceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH
Confidence 3578888863 1112344446677888884 33333 34444443 334444455668999999999999999986
Q ss_pred CCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-cccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 93 ~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
..+.+.+ .|+..|+++.++....++|+++..|.|.+-.+.+.. ....+.+. ...+.-+.|++.-.+++.+.+++|.|
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 5555554 488899999999999999999999999999887643 33344333 45677899999888999999999999
Q ss_pred EEEeCCCCceEEeec--CCCCEEEEEECCCCcE-EEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEec
Q 024372 171 RLWDARSGKIVQTLE--TKSPVTSAEVSRDGRY-ITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~-l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (268)
.+||+.....+..+. |..+...++|+|.... +++ |-|..|.+||.+..+..+.+.+..+...++|.+ .|.+|++|
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~-~G~~L~aG 268 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE-CGTYLCAG 268 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC-CceEEEee
Confidence 999998877765543 5678899999998654 443 579999999999887777777777777778777 69999999
Q ss_pred cCCCeEEEEECC-CCcEEee
Q 024372 247 GEDMWVHVFDFH-TGEQIAI 265 (268)
Q Consensus 247 s~d~~i~~wd~~-~g~~~~~ 265 (268)
...|.|+.||++ +-.++++
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred cCCceEEEEecccCCCCceE
Confidence 999999999997 3444544
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=3.7e-20 Score=150.51 Aligned_cols=202 Identities=17% Similarity=0.289 Sum_probs=152.2
Q ss_pred EeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCeee--------eeccCCeEEEEEECC-CCCEEEEeeCCCe
Q 024372 56 TFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKH--------SFEHKHIVRACAFSE-DTHLLLTGGFEKI 125 (268)
Q Consensus 56 ~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~--------~~~~~~~v~~v~~~~-~~~~l~s~~~d~~ 125 (268)
.+.||+++|..++|.|.+ ..+||||.|.+|+||.+-.+...+ ...|...|..+.|+| -.++|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 457999999999999866 568999999999999986544322 234888999999999 4578999999999
Q ss_pred EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcEEE
Q 024372 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT 203 (268)
Q Consensus 126 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~ 203 (268)
|.+|++.+++..... .|.+.|.++.|+.++..++++| .|+.|||||.|+++.+..-..| .....+.|-.+|++++
T Consensus 156 v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~Ttc-kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCTTC-KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeec--CCCCeEEEEEeccCCceeeeec-ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999988755443 3788999999998887666665 5699999999999998876433 2356677888888777
Q ss_pred Ee----CCCeEEEEeCCCcee---eeEEeCCCCceeeEEcCCCCCEEE-eccCCCeEEEEECCCCc
Q 024372 204 TA----DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGNIFI-AGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 204 ~~----~~~~v~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~gs~d~~i~~wd~~~g~ 261 (268)
++ +++.+-+||-.+.+. +.......++.---+.+ +..+++ +|=.|+.||-|++.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEecCCC
Confidence 66 367899999876533 23333344433333344 455555 45579999999986544
No 146
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.7e-19 Score=135.97 Aligned_cols=227 Identities=17% Similarity=0.278 Sum_probs=168.3
Q ss_pred eeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---------CC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGET---------GD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---------~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.+-+++ |-+++|+.|+.+|+|-+..+++ |+ .+-.+++|.++|+.++|. ..+|++|+ ||.|+=|.
T Consensus 14 f~qa~s---p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 14 FAQAIS---PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHhhC---CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 334455 5789999999999999986543 22 355668999999999998 44666765 59999988
Q ss_pred CCCCCe----eeeec-----cC-----CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeC
Q 024372 90 ALTGDE----KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (268)
Q Consensus 90 ~~~~~~----~~~~~-----~~-----~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (268)
.+.... +..++ +. -.|+++...|..+-++.++.|+.+.-||+++++ ..+...+|.+.+.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecc
Confidence 754322 11111 11 148889999987777777899999999999875 4567778999999988633
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCceEEeecCC--C-----CEEE--EEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeC
Q 024372 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETK--S-----PVTS--AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~-----~v~~--~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~ 226 (268)
..+. +.+|++||++||||++++++++.++.. . .+.. .++.-+...++++.+..+.+|.++..+++..|.+
T Consensus 167 ~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 167 ANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence 3333 456788999999999999999887531 1 0111 3444455688999999999999999999999999
Q ss_pred CCCceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
+.....+.|. .+.++++|+...|.-|-.
T Consensus 246 pa~v~~v~F~---~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 246 PARVHLVDFV---DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccceeEeeee---cceEEEeccccceeeeee
Confidence 8777666664 567888888888888865
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=157.62 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=199.0
Q ss_pred CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEe--eCCCC--CeEEEeeCccCcEEEEEec-CCCcEE
Q 024372 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETG--DWIGTFEGHKGAVWSCCLD-ANALFS 76 (268)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw--~~~~~--~~~~~~~~h~~~V~~~~~~-~~~~~l 76 (268)
|+|+....... .|.+.|..+.|-|- --.|++++.|..+++| |..+| ++++.-.||..|-.++.|- .++.++
T Consensus 275 e~kkl~~v~~n-ah~~sv~~~~fl~~---epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 275 EKKKLINVTRN-AHYGSVTGATFLPG---EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred CCCeeeeeeec-cccCCcccceecCC---CceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 45555554433 69999999999874 4489999999999998 43344 4566667999999999987 778899
Q ss_pred EEeeCCCcEEEEeCCCC-------C-----------------------------------------------eee-----
Q 024372 77 ASGSADFTAKLWDALTG-------D-----------------------------------------------EKH----- 97 (268)
Q Consensus 77 ~s~s~D~~v~iw~~~~~-------~-----------------------------------------------~~~----- 97 (268)
.+++.|++.+.+++... + ..+
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 99999999888876110 0 000
Q ss_pred -------eeccC------CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE--ecCCcccEEEEEEeCCCCcEEE
Q 024372 98 -------SFEHK------HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 98 -------~~~~~------~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
.+.+. ..+++|+.++-|++.+.|...|.|-+|++.++-..... ...|.++|+.++...-+..++
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v- 509 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV- 509 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE-
Confidence 11122 34788899999999999999999999999765432222 236888999998655544445
Q ss_pred EeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCC
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLG 240 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 240 (268)
+++.+|.++.||..+...+..+.....+.++..+....+++. .++-.|+++|..+.+.++.|..+.+ ....+++| +|
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-Dg 588 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DG 588 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CC
Confidence 555669999999999888888887777888888887666654 5778999999999888888876554 56777777 79
Q ss_pred CEEEeccCCCeEEEEECCCCcEEeec
Q 024372 241 NIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 241 ~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+++++++.|+.|++||+-+|.+|..+
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeE
Confidence 99999999999999999999998763
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-19 Score=145.48 Aligned_cols=186 Identities=14% Similarity=0.177 Sum_probs=146.2
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC--CcEEEEeeCCCcEEEEeCCCCCeeeeec---c-CCeE
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFE---H-KHIV 105 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~---~-~~~v 105 (268)
..+|++...+++++||..+|+.++.|++|.+.+..+.|... ...+.+|+.||+||+||++.......+. + +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 45888999999999999999999999999999988988753 3457899999999999998776544432 2 3466
Q ss_pred EEEEECCCCCEEEEee----CCCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372 106 RACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (268)
Q Consensus 106 ~~v~~~~~~~~l~s~~----~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 180 (268)
.+++.+..++++++|. .+-.+.+||++..+... .....|.+.|+++.|.|++++++++|+-||.|.|+|+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777888888774 45668899998765522 344568889999999999999999999999999999975432
Q ss_pred ----EEeecCCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCC
Q 024372 181 ----VQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANH 217 (268)
Q Consensus 181 ----~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~ 217 (268)
++++.+...|.++.|..++ ++..-+...+..+|+++.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 4455666678899998887 544446667888887753
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-18 Score=147.98 Aligned_cols=237 Identities=16% Similarity=0.241 Sum_probs=174.2
Q ss_pred EeeecCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 11 VCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 11 ~~~~h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
+++||++ .|-+++|+ +|..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+..++-|+.||.++..+
T Consensus 63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 4566554 78899998 567899999999999999999999999998999999999999999999999999888888
Q ss_pred CCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe----Ee--cC-CcccEEEEEEeCCCCc
Q 024372 90 ALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EV--GN-SSGSIRTVAWLHSDQT 159 (268)
Q Consensus 90 ~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~--~~-~~~~v~~~~~~~~~~~ 159 (268)
...+....... .+..|.+++|+|++..+++|+.||.|++||..++..... .. .. ...-|.++.+..++
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-- 216 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-- 216 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--
Confidence 87766544332 346899999999999999999999999999876543320 00 11 22346777777543
Q ss_pred EEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeC-CCce---eeeEEeCCC-Ccee
Q 024372 160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA-NHFG---LVKGYNMPC-NTES 232 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~-~~~~---~~~~~~~~~-~~~~ 232 (268)
.+++|...|+|++||...+..++.+. +...|.+++.++++.++.+ |-|+.|--+.. .+.. .......+. ...+
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 46667777999999999999988776 4567999999999777654 55766554443 3311 222223332 3344
Q ss_pred eEEcCCCCCEEEeccCCCeEEEEE
Q 024372 233 ASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
.+.. +..+++||.|..+.+=-
T Consensus 297 ~av~---~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 297 MAVI---ENALISGGRDFTLAICS 317 (691)
T ss_pred eeee---cceEEecceeeEEEEcc
Confidence 4443 33777888887665543
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.5e-19 Score=151.55 Aligned_cols=240 Identities=20% Similarity=0.253 Sum_probs=175.2
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--EEEEeeCCCcE
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTA 85 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~s~D~~v 85 (268)
+.+++.||++-|++|.-.| .|.+||+|+.||+++||.+.+|++++++. -.+.|.+++|.|.+. .||.+ .+..+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECV 466 (733)
T ss_pred eeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCce
Confidence 3456679999999998875 89999999999999999999999998886 346899999998764 34433 33334
Q ss_pred EEEeCCCC--------------------------------------CeeeeeccCCeEEEEEECCCCCEEEEeeCC---C
Q 024372 86 KLWDALTG--------------------------------------DEKHSFEHKHIVRACAFSEDTHLLLTGGFE---K 124 (268)
Q Consensus 86 ~iw~~~~~--------------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d---~ 124 (268)
.|-+..-+ .....+.|...|+.+.||..|.+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 44442111 012234577889999999999999987543 5
Q ss_pred eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEE
Q 024372 125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYIT 203 (268)
Q Consensus 125 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~ 203 (268)
.+-+.++.....+ .-+....+.+.++.|.|....++++ +. +.|+|||+..++.++++.... .+..++++|.|.-|+
T Consensus 547 ~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVa-Tq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVA-TQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred eEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEE-ec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 5778888654332 3333456788899988877666554 55 899999999888887776544 488999999986554
Q ss_pred -EeCCCeEEEEeCCCc-eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 204 -TADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 204 -~~~~~~v~~wd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
++-++.+..+|+.-. +..++..++.. ..++++++ .--+|++|+.|+.+.|+.
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence 567899999998643 34455555544 34555555 467899999999999985
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-19 Score=150.83 Aligned_cols=206 Identities=15% Similarity=0.176 Sum_probs=172.8
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC--CeEEEEE
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACA 109 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~~v~~v~ 109 (268)
.|+++|+..+.|+|||++...+.+.+++|+..|..+.|.-...++|+++..|-|.|-.+.++.....+.+. ..|+.+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 69999999999999999966667788999999999999999999999999999999999999988888765 4688999
Q ss_pred ECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC
Q 024372 110 FSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188 (268)
Q Consensus 110 ~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 188 (268)
|+|..+ +|.+++++|.+.+||+............|..+...|+|+|.+..++++-+.|+.|.+||+++.+....+-...
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 999665 5667899999999999765544445556888999999999999999998899999999999888777777778
Q ss_pred CEEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCC-CceeeEEcC
Q 024372 189 PVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPC-NTESASLEP 237 (268)
Q Consensus 189 ~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~-~~~~~~~~~ 237 (268)
+...++|.++|.+|.+| ..|.|..||+|.. .++.....+. .+.+++|.+
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 89999999999998876 4689999999864 3455554433 245555554
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-18 Score=137.35 Aligned_cols=239 Identities=19% Similarity=0.298 Sum_probs=171.7
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC---CcEEEEeeCCCcEEEEeC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDA 90 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~s~D~~v~iw~~ 90 (268)
+|.=.|..+-|-|+ |.-++.++|-|++++|||..+-+....|+ -++.|++-+++|- ..++|+|-+|-.|++-|+
T Consensus 99 ~Hky~iss~~WyP~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 99 GHKYAISSAIWYPI--DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred cceeeeeeeEEeee--cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 68889999999997 44599999999999999999987766675 4578888888874 457889999999999999
Q ss_pred CCCCeeeeec-cCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCC------------C-C-CeEecCCcccEEEEEEe
Q 024372 91 LTGDEKHSFE-HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPD------------A-P-PREVGNSSGSIRTVAWL 154 (268)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~------------~-~-~~~~~~~~~~v~~~~~~ 154 (268)
..+...+++. |...|.+|.|+|.. -+|++|+.|+.||+||++... . + .+....|.+.++.++|.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 9999988885 89999999999955 477899999999999987431 1 1 11123467889999998
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCCceE-Eeec---C----CCCEEEEEECCC-CcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372 155 HSDQTILSSCTDSGGVRLWDARSGKIV-QTLE---T----KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~---~----~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~~~~~~~~~ 225 (268)
.++.++++. +.|..+++|+..+|+.. ..+. + +..+. +. +.+ +.++..-.++.+.+..+-.++-++.+.
T Consensus 256 Sd~~~l~~~-gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 256 SDARYLASC-GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred ccchhhhhc-cCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeee
Confidence 887765554 55689999999988643 2221 1 11121 11 222 223333344667777766666666665
Q ss_pred CCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.+-....+++.-++=+...+|..|+.|+.|-..
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCcccccccc
Confidence 554434444443344567889999999999764
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-18 Score=153.29 Aligned_cols=205 Identities=14% Similarity=0.199 Sum_probs=163.2
Q ss_pred eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
+.|..+..|.+.|.+++- ++++|++|+.+.+|.+|....++.-..+.--+-+++.++|+.+|.++|.||.|-.|+
T Consensus 47 e~P~ti~~~g~~v~~ia~-----~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK 121 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIAC-----YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVK 121 (933)
T ss_pred cCCchhhccCceeEEEee-----cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEE
Confidence 345545457788888866 455899999999999998877764333433467899999999999999999999999
Q ss_pred EEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe------cCC-cccEEEEEEeCCCC
Q 024372 87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV------GNS-SGSIRTVAWLHSDQ 158 (268)
Q Consensus 87 iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~------~~~-~~~v~~~~~~~~~~ 158 (268)
+-+..+......+ .|..+|.++.|+|++++||+.+-||.+++||+.++....... ... ...+..++|.|+++
T Consensus 122 ~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 122 LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 9998876655554 599999999999999999999999999999998654322111 111 23456789999999
Q ss_pred cEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeC-CCeEEEEeCCC
Q 024372 159 TILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTAD-GSSVKFWDANH 217 (268)
Q Consensus 159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~ 217 (268)
.+++.+.+ +.|++++....+....+.. +..+..+.|+|+|+||+++. ++.|.+||.++
T Consensus 202 ~la~~~~d-~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 202 TLAVPPVD-NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEeeccC-CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98888776 8999999998887777642 34489999999999999875 89999999985
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=3e-19 Score=156.94 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=173.5
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe---eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
..+++++-++ =|+..+.|+..|+|-+++.++|...++| ..|+++|..++...-++.++|++.+|.+++||....
T Consensus 449 ~~~~av~vs~---CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVSF---CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEec---cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCc
Confidence 4667777664 6889999999999999999999888888 589999999999988999999999999999999998
Q ss_pred CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 94 ~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
..+..+.....+.++..+....+++.+..|-.|+++|..+. ...+++.+|.+.++.++|+|++.++++++ -|++||+|
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~w 603 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTW 603 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEE
Confidence 88888888888999999988889999999999999998764 34677778999999999999999988775 56999999
Q ss_pred eCCCCceEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC
Q 024372 174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH 217 (268)
Q Consensus 174 d~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~ 217 (268)
|+.++.++--+....++.++.++|+|.||++. +...|.+|-.+.
T Consensus 604 Dlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 604 DLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999888878889999999999999875 347899998754
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=6e-17 Score=138.92 Aligned_cols=250 Identities=31% Similarity=0.480 Sum_probs=186.0
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeC-CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAK 86 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~ 86 (268)
...+.+|...|.+++|+| ++.++++++. |+.+++|+...++.+..+.+|...|..++++|++. ++++++.|+.++
T Consensus 148 ~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 148 IRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred EEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 344568999999999985 7778888886 99999999999999999999999999999999997 666669999999
Q ss_pred EEeCCCCCeee-ee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 87 LWDALTGDEKH-SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 87 iw~~~~~~~~~-~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
+||...+.... .+ .|.... ...|++++..+++++.|+.+++|+.............|...+.++.+.|....+++ +
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 302 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-G 302 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-e
Confidence 99988666665 33 355544 33799999889999999999999987544312222345778999999886666666 6
Q ss_pred eCCCeEEEEeCCCCceEEeec--CCC-CEEEEEECCCCcEE-EE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCC
Q 024372 165 TDSGGVRLWDARSGKIVQTLE--TKS-PVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL 239 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~~~~~~--~~~-~v~~~~~s~~g~~l-~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (268)
+.|+.+++||.++........ .+. .+..+.+.+++..+ .+ ..++.+++|+....................+.+ .
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 381 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D 381 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence 666889999999887666554 333 48888884342344 34 356889999998765333333332245556666 5
Q ss_pred CCEEEe-ccCCCeEEEEECCCCcEEee
Q 024372 240 GNIFIA-GGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 240 ~~~~~~-gs~d~~i~~wd~~~g~~~~~ 265 (268)
..++. ++.++.+.+|+......+..
T Consensus 382 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (466)
T COG2319 382 -GRVVSSGSTDGTVRLWDLSTGSLLRN 407 (466)
T ss_pred -CCEEEEecCCCceEEEecccCeeeee
Confidence 44554 78999999999987766543
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=5e-17 Score=139.46 Aligned_cols=250 Identities=26% Similarity=0.460 Sum_probs=188.1
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccC-cEEEEEe-cCCCc-EEEEee-CCCcE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCL-DANAL-FSASGS-ADFTA 85 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~-~V~~~~~-~~~~~-~l~s~s-~D~~v 85 (268)
.+.+|...+..+.|.+ .+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++. +++..+ .|+.+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3458999999999985 77889999999999999999887 7777777443 6777777 77776 555544 49999
Q ss_pred EEEeCCC-CCeee-eeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 86 KLWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 86 ~iw~~~~-~~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
++|+... ..... ...|...|..+.|+|+++.+++++. |+.+++|++.... .......|...+.+++|.|.+..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEE
Confidence 9999987 44433 4458889999999999998888885 9999999987532 33444457889999999977765666
Q ss_pred EeeCCCeEEEEeCCCCceEE-eecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCcee-eeEEeCC-CCceeeEEcCC
Q 024372 163 SCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPK 238 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~-~~~~~~~-~~~~~~~~~~~ 238 (268)
+++.|+.|++||.+.+..+. .+..+.......|+|++.+++ ++.++.+++||++.... +..+..+ .......+.|
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 294 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP- 294 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-
Confidence 66788999999999888887 566544332227999996665 56789999999986543 4444222 3344555666
Q ss_pred CCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 239 LGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 239 ~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.+..+++++.|+.+.+||..++.....
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 577777788888899999887765443
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.5e-18 Score=137.62 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=173.3
Q ss_pred CcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEee
Q 024372 2 DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGS 80 (268)
Q Consensus 2 ~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s 80 (268)
|-.+...+.++.+|-.||.+++|++ ||..|+++|+|-.|++||+..|.+++.++ -.++|+.+.|+|..... +..=
T Consensus 51 D~~T~~iar~lsaH~~pi~sl~WS~---dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 51 DFDTFRIARMLSAHVRPITSLCWSR---DGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred EccccchhhhhhccccceeEEEecC---CCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEE
Confidence 3345556778899999999999984 99999999999999999999999998887 56899999999865432 2233
Q ss_pred CCCcEEEEeCCCCCeeeeecc------CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe
Q 024372 81 ADFTAKLWDALTGDEKHSFEH------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL 154 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~~------~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~ 154 (268)
.+..-.+-++..+.. ..++. ...-.+..|.+.|+++++|...|.+-++|..+-+............|..+.+.
T Consensus 127 ~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 127 MEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred ecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 444455555543211 11111 11223446899999999999999999999876543332222223467777777
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCC-------Cc--eEEeec---CCCCEEEEEECCCCcEEEEeC--CCeEEEEeCCCcee
Q 024372 155 HSDQTILSSCTDSGGVRLWDARS-------GK--IVQTLE---TKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGL 220 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~-------~~--~~~~~~---~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~~~~ 220 (268)
..+..++ ..+.|+.||.++++. ++ ..+.++ -+..+++++|+.+|.|+.+++ ...+++|....+.+
T Consensus 206 ~~g~~li-iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 206 RKGRFLI-INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred ccCcEEE-EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce
Confidence 6666555 445669999999862 11 123332 134688999999999987654 46799999999999
Q ss_pred eeEEeCCCCcee--eEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 221 VKGYNMPCNTES--ASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 221 ~~~~~~~~~~~~--~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
++.+....+... +.+.| -+.++..=..|.|++|.+.
T Consensus 285 VKILhG~kgE~l~DV~whp--~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 285 VKILHGTKGEELLDVNWHP--VRPIIASIASGVVYIWAVV 322 (405)
T ss_pred eeeecCCchhheeeccccc--ceeeeeeccCCceEEEEee
Confidence 999988765443 34444 3334433366789999864
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.7e-17 Score=138.86 Aligned_cols=229 Identities=14% Similarity=0.191 Sum_probs=175.8
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC--
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-- 94 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-- 94 (268)
+.|.++.|.+ +|+ +++|-.+|.|.||+..+.+..+....|.+.|.+++.-.+|.++ ||+.|..|..||-.-.+
T Consensus 247 k~Vl~v~F~e---ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 247 KFVLCVTFLE---NGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred eEEEEEEEcC---CCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccc
Confidence 5789999985 665 6799999999999998888777777999999999999888764 69999999999832110
Q ss_pred ---------------------------------------eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372 95 ---------------------------------------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (268)
Q Consensus 95 ---------------------------------------~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (268)
....+.|.+....++.+|+...+++++.|+.+++|+- .+
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k 399 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HK 399 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--Cc
Confidence 0111125556777888999999999999999999982 22
Q ss_pred CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEe
Q 024372 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWD 214 (268)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd 214 (268)
..... ....+..|+.|.|.+ .++.|+-.|...+.|.++...+.......+++.+.++|+|.+++.+ .|+.|.+|.
T Consensus 400 ~~wt~--~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 400 LEWTK--IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred eeEEE--EecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 22222 234578899998877 5666677799999999997766655557789999999999999865 689999998
Q ss_pred CCCc----eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 215 ANHF----GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 215 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+... ..+..+.. +.+.-++|++ ++++|.+-|.|--|..|...
T Consensus 476 Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred ECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence 7542 22333334 4566777877 69999999999999999543
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=2.3e-18 Score=148.76 Aligned_cols=255 Identities=18% Similarity=0.253 Sum_probs=186.9
Q ss_pred eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---------------------eE---------
Q 024372 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------------WI--------- 54 (268)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---------------------~~--------- 54 (268)
++.....+.||++=|.+++|.....+-.+||++|.|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 667777889999999999998766556799999999999999654322 01
Q ss_pred -EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC-----------------------------ee--------
Q 024372 55 -GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------------------------EK-------- 96 (268)
Q Consensus 55 -~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-----------------------------~~-------- 96 (268)
.-+.||++.|+++.|+|.+..|+|+|.|+++.+|...... .+
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 1124999999999999999889999999999999864320 00
Q ss_pred -eee---------------ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCCC
Q 024372 97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSD 157 (268)
Q Consensus 97 -~~~---------------~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 157 (268)
+.+ .|-..|+.+.|+|.|.+|++.+.|.+-|+|-....+....++ ..|...++|+++.+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 000 145568999999999999999999999999754211112222 135567889998875
Q ss_pred CcEEEEeeCCCeEEEEeCCC-------------------------------------------Cce----EEee------
Q 024372 158 QTILSSCTDSGGVRLWDARS-------------------------------------------GKI----VQTL------ 184 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~-------------------------------------------~~~----~~~~------ 184 (268)
...+++|.+.+-+|+|+... |.. .++.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 56677888889999996541 000 0000
Q ss_pred ------------------------cCCCCEEEEEECCCCcEEEEeC------CCeEEEEeCCCceeeeEEeCCCC-ceee
Q 024372 185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN-TESA 233 (268)
Q Consensus 185 ------------------------~~~~~v~~~~~s~~g~~l~~~~------~~~v~~wd~~~~~~~~~~~~~~~-~~~~ 233 (268)
.|...+.+++.+|+|++++++- -..|++|+..++..++.+..++. +..+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 0012589999999999998752 23699999998877776665554 5567
Q ss_pred EEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~ 261 (268)
.|+| +|++|+++|-|+++.+|+...+.
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeeccc
Confidence 7777 79999999999999999975443
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=149.69 Aligned_cols=234 Identities=19% Similarity=0.313 Sum_probs=167.8
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC---
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--- 94 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~--- 94 (268)
.|..++|.| ||..|+.+.. ..+.+||+++|.++.++++|++-|++++|+.||..+|||+.|+.|.+|+..-..
T Consensus 14 ci~d~afkP---DGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKP---DGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECC---CCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 899999985 8988886654 456889999999999999999999999999999999999999999999853111
Q ss_pred -----eeee--e--------------------------ccC--CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCC
Q 024372 95 -----EKHS--F--------------------------EHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APP 138 (268)
Q Consensus 95 -----~~~~--~--------------------------~~~--~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~ 138 (268)
.++. + .++ ..+.+++|..||++++-|-.+|+|.+-+-..++ ..+
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 0000 0 011 246788899999999999999999998754322 222
Q ss_pred eEecCCcccEEEEEEeCCCC----cEEEEeeCCCeEEEEeCCCCceEEe-ecCCCCEEEEEECCCCcEEE-EeCCCeEEE
Q 024372 139 REVGNSSGSIRTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKIVQT-LETKSPVTSAEVSRDGRYIT-TADGSSVKF 212 (268)
Q Consensus 139 ~~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~ 212 (268)
...++.+.+|.+++|+|..+ .+++......++.++.+. |+.+.. -...-...|+.+.|+|.|+. +|.++.+.+
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEE
Confidence 33355778999999998654 234444444566666654 333321 11223467899999999865 567888888
Q ss_pred EeCCCceeeeEE-eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 213 WDANHFGLVKGY-NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 213 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
|--+. -.+-+. ...+-+.++...| .++.++.|..||+|-.||+.
T Consensus 249 fTR~G-vrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 249 FTRDG-VRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EeecC-eEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhhH
Confidence 86432 222222 1233456777777 59999999999999999874
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.3e-17 Score=129.63 Aligned_cols=213 Identities=17% Similarity=0.298 Sum_probs=157.5
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------C-C--eEEEeeCccCcEEEEEecCC--CcEEEEeeC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------G-D--WIGTFEGHKGAVWSCCLDAN--ALFSASGSA 81 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------~-~--~~~~~~~h~~~V~~~~~~~~--~~~l~s~s~ 81 (268)
..|.+.|..+.|.+. .-|+.+|++|.|+++.||.-.. + + ...++......|+.+.|.|. |..||+++.
T Consensus 56 rah~~Si~rV~WAhP-EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 56 RAHDGSIWRVVWAHP-EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred EecCCcEEEEEecCc-cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence 579999999999764 4699999999999999995411 1 2 34567777889999999985 678999999
Q ss_pred CCcEEEEeCCCCCeeeee------c--------cCCeEEEEEECC---CCCEEEEeeCC-----CeEEEEECCCCCC---
Q 024372 82 DFTAKLWDALTGDEKHSF------E--------HKHIVRACAFSE---DTHLLLTGGFE-----KILRIFDLNRPDA--- 136 (268)
Q Consensus 82 D~~v~iw~~~~~~~~~~~------~--------~~~~v~~v~~~~---~~~~l~s~~~d-----~~i~~~d~~~~~~--- 136 (268)
||++|||+....-..... . +..+..|+.|+| ...+|+.|+.+ +.+++|..+....
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~ 214 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL 214 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee
Confidence 999999997654332222 1 445678999988 45788888766 4678887654332
Q ss_pred CCeEecCCcccEEEEEEeCCCC---cEEEEeeCCCeEEEEeCCCCc--------------------eEEeec-CCCCEEE
Q 024372 137 PPREVGNSSGSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGK--------------------IVQTLE-TKSPVTS 192 (268)
Q Consensus 137 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~iwd~~~~~--------------------~~~~~~-~~~~v~~ 192 (268)
...+...+..+|+.++|.|.-+ +++++++.|| |+||.++... .+..+. |+++|-.
T Consensus 215 kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 215 KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 2234557889999999998654 5788888888 9999987311 122233 4568999
Q ss_pred EEECCCCcEEEE-eCCCeEEEEeCC---CceeeeEEeCC
Q 024372 193 AEVSRDGRYITT-ADGSSVKFWDAN---HFGLVKGYNMP 227 (268)
Q Consensus 193 ~~~s~~g~~l~~-~~~~~v~~wd~~---~~~~~~~~~~~ 227 (268)
+.|+-.|..|++ |+||.||+|... .++++..+...
T Consensus 294 v~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred EEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 999999999876 678999999853 34566555543
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.8e-19 Score=142.33 Aligned_cols=200 Identities=25% Similarity=0.338 Sum_probs=145.7
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe---eCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
-+.||-..|+.+.|.|.. -+++++||.|.+||+|++++..++..| .||.+.|.++.|++++.+++|++.|+++++
T Consensus 130 ~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred ceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 346899999999999954 479999999999999999999998777 579999999999999999999999999999
Q ss_pred EeCCCCCe------e-------------------eee----ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-
Q 024372 88 WDALTGDE------K-------------------HSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP- 137 (268)
Q Consensus 88 w~~~~~~~------~-------------------~~~----~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~- 137 (268)
|++...+. . ..+ -|..+|.|+.|- |.++++-+-++.|..|-...-+..
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~ 285 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESI 285 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhh
Confidence 99863221 0 000 145556666664 468888888899999976211100
Q ss_pred ------------CeEecCCcccEEEEEE--eCCCCcEEEEeeCCCeEEEEeCCCCceE--Eeec---CCCCEEEEEECCC
Q 024372 138 ------------PREVGNSSGSIRTVAW--LHSDQTILSSCTDSGGVRLWDARSGKIV--QTLE---TKSPVTSAEVSRD 198 (268)
Q Consensus 138 ------------~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~---~~~~v~~~~~s~~ 198 (268)
...+.-.+..+.-+.| .+-+ .+++.|...|.|.+||++..+.. .++. ....|...+|+.|
T Consensus 286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred hccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 0111122334444443 3333 35566677799999999987652 2222 2356999999999
Q ss_pred CcEEEE-eCCCeEEEEeC
Q 024372 199 GRYITT-ADGSSVKFWDA 215 (268)
Q Consensus 199 g~~l~~-~~~~~v~~wd~ 215 (268)
|.+|+. .++++|.-||.
T Consensus 365 gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEEeCCCcEEEEEe
Confidence 998765 68899999985
No 163
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=1.4e-17 Score=146.22 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=177.0
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEe----eCccCcEEEEEecCCCc--EEEEe
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTF----EGHKGAVWSCCLDANAL--FSASG 79 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~----~~h~~~V~~~~~~~~~~--~l~s~ 79 (268)
.|-...--..+|.+++|+|.. .++||.|+.+|+|-+||+..+.. ...+ ..|..+|..+.|..+.. -++|+
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~--p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFD--PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CceEEEecCCceeEEEeccCC--cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 344344457799999999964 46999999999999999988764 2222 46889999999865443 37899
Q ss_pred eCCCcEEEEeCCCCCeee------eec-------cCCeEEEEEECC-CCCEEEEeeCCCeEEEEE---CCCCC----CCC
Q 024372 80 SADFTAKLWDALTGDEKH------SFE-------HKHIVRACAFSE-DTHLLLTGGFEKILRIFD---LNRPD----APP 138 (268)
Q Consensus 80 s~D~~v~iw~~~~~~~~~------~~~-------~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d---~~~~~----~~~ 138 (268)
|.||.|..|++..-.... ... ....++++.|.+ +...++.|+.+|.|..=+ ..... ...
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 999999999874322100 111 122578899988 677899999999987622 22111 112
Q ss_pred eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-CCceEEeecCCCC-EEEEEECCCCcE-EEEe-CCCeEEEEe
Q 024372 139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETKSP-VTSAEVSRDGRY-ITTA-DGSSVKFWD 214 (268)
Q Consensus 139 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-v~~~~~s~~g~~-l~~~-~~~~v~~wd 214 (268)
.....|.+++.++.++|-...++++++ |-+++||.-. ...++..+..+.. +.+++|||..-- +++. .+|.+.+||
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 234457889999999998888888877 5899999987 5566666655444 999999998743 3444 579999999
Q ss_pred CCC--ceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 215 ANH--FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+.. .+++.+.............++.|+.+++|...|.+++|++.
T Consensus 471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 964 34454444433344444555579999999999999999984
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=3e-18 Score=136.33 Aligned_cols=231 Identities=18% Similarity=0.311 Sum_probs=169.1
Q ss_pred CCCeeeEEEec----CCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCc---EEEEEecCCCcEEEEeeCCCcEE
Q 024372 16 SRPVVDLFYSP----ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGA---VWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 16 ~~~v~~~~f~~----~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~---V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
-+.|...+|-| ..|+.+++|+.+++.-|.+||.-+|++...+++ |.+. ..+++|+|||.+|. ++....||
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEE
Confidence 34677777753 347889999999999999999999999888875 4433 46789999999875 45788999
Q ss_pred EEeCCCCCe----eeeecc-----CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372 87 LWDALTGDE----KHSFEH-----KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 87 iw~~~~~~~----~~~~~~-----~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (268)
++|+..... ..++.+ ...+.+++|+| +.++++.|++.+.+-+|.-.. ..+....+.|++.|+.+.|.++
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccC
Confidence 999844321 222223 45688999999 667999999999998887543 4456777789999999999999
Q ss_pred CCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC----EEEEEECCCCcEEEEe-CCCeEEEEeCCCc-eeeeEEeCCCC
Q 024372 157 DQTILSSCTDSGGVRLWDARSG-KIVQTLETKSP----VTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCN 229 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~----v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~-~~~~~~~~~~~ 229 (268)
+.++++++..|..|..||+|.- ..+..+..+.. -.-..+.|++++|+++ .+|.|++||++.. ..+..+..+..
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence 9999998888889999999864 44555553321 2234567999999987 6899999999884 33555544333
Q ss_pred -ceeeEEcCCCCCEEEeccCC
Q 024372 230 -TESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 230 -~~~~~~~~~~~~~~~~gs~d 249 (268)
...+++.| .=.++++++..
T Consensus 342 ~vNgvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNP-IMPILATSSGQ 361 (406)
T ss_pred cccceecCc-ccceeeeccCc
Confidence 22344444 34455555544
No 165
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.5e-18 Score=134.69 Aligned_cols=195 Identities=19% Similarity=0.294 Sum_probs=149.2
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 94 (268)
|.-+|..+-. +.++.++++++.|-+|-+|+.. |+++.++......-+.++++|+|+++++++..--|++|.+--.+
T Consensus 186 h~v~~i~iGi---A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 186 HQVDIINIGI---AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred cccceEEEee---cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 5555555444 3678999999999999999998 99998888777777888999999999999999999999873221
Q ss_pred ------eeeee---ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC------CCeEe----cCCcccEEEEEEeC
Q 024372 95 ------EKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA------PPREV----GNSSGSIRTVAWLH 155 (268)
Q Consensus 95 ------~~~~~---~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~------~~~~~----~~~~~~v~~~~~~~ 155 (268)
..+.+ .|+..|...+|+++....++.+.||.+|+||.+-.-. ..... ....+.-.-+..+|
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC
Confidence 12222 3888999999999999999999999999999753110 00111 01112223577788
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
+++.+.++ .. ..|+++..++|+...+++ +...+.++.|+|+|+++++..|+.+++...
T Consensus 342 ~g~~lA~s-~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~n 401 (420)
T KOG2096|consen 342 SGDSLAVS-FG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRN 401 (420)
T ss_pred CCcEEEee-cC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecC
Confidence 88765544 33 579999999998877776 445699999999999999999999998764
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=3.9e-18 Score=133.96 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=154.5
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---eEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEe
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~ 89 (268)
.+..|+++..|+... -+++.+.|-|-|+.|||+++|. ....|-+|...|+.++|...+ +.+||.|.||.+|+||
T Consensus 148 ~~~aPlTSFDWne~d--p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVD--PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred ccCCcccccccccCC--cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 467799999999864 4799999999999999999873 355677899999999999866 5789999999999999
Q ss_pred CCCCCeeeee-c---cCCeEEEEEECC-CCCEEEEee-CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE
Q 024372 90 ALTGDEKHSF-E---HKHIVRACAFSE-DTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 90 ~~~~~~~~~~-~---~~~~v~~v~~~~-~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (268)
+........+ + ...+..-++|++ |.+++|+-. ....|.+.|++.+........+|++.|+.++|.|....-+.+
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 9765543322 2 244677788988 556777644 446788999998887788888999999999999988888888
Q ss_pred eeCCCeEEEEeCCCC-c-----eEEeecCCCCEEEEEECCC-CcEEEEeCCCeEEE
Q 024372 164 CTDSGGVRLWDARSG-K-----IVQTLETKSPVTSAEVSRD-GRYITTADGSSVKF 212 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~-~-----~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~v~~ 212 (268)
+++|..+.|||+.+- + .+..+...++|+.+.|+|. +..++...++.+.+
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeE
Confidence 899999999999652 1 2333445678999999965 56777666555443
No 167
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.5e-16 Score=133.35 Aligned_cols=242 Identities=18% Similarity=0.231 Sum_probs=172.3
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeE---EEeeCcc-CcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~---~~~~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
-++.|..+.|+|. |-+++++. .-+.+.+|+.+.+.+. ..|++++ .-|.+++|.++++. +||..+|.|.||+.
T Consensus 199 sne~v~~a~FHPt--d~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 199 SNEVVFLATFHPT--DPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSK 274 (626)
T ss_pred ccceEEEEEeccC--CCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeC
Confidence 3567889999995 44455555 4567889999988654 5566654 46999999999985 69999999999999
Q ss_pred CCCCeee-eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC----------CeE-------------------
Q 024372 91 LTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----------PRE------------------- 140 (268)
Q Consensus 91 ~~~~~~~-~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~----------~~~------------------- 140 (268)
.+....+ ...|...|.+++.-.+|.+| +|+.|+.|..||-+-.+.. .+.
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 7766533 34688899999999899755 5999999999983211000 000
Q ss_pred ----------ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeE
Q 024372 141 ----------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV 210 (268)
Q Consensus 141 ----------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v 210 (268)
...|......++..| ...++++|+.|+.++||+ ..+...+.....++.++.|+|.|.+.++...+.-
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w 430 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRW 430 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceE
Confidence 011223344555444 345677888889999999 4555555555678899999999944444556788
Q ss_pred EEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC-CCcEEee
Q 024372 211 KFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIAI 265 (268)
Q Consensus 211 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~-~g~~~~~ 265 (268)
-+.|.++...+....-........++| +|.+|+.||.|..||+|.+. +|.+...
T Consensus 431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 888998877666555444444555555 79999999999999999986 4554443
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.5e-18 Score=145.23 Aligned_cols=214 Identities=19% Similarity=0.247 Sum_probs=160.2
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCC--CcEEEEeeCCCcEE
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN--ALFSASGSADFTAK 86 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~--~~~l~s~s~D~~v~ 86 (268)
..|.||++.|++|+|+. ||.+|++||.|--+.|||....+++..+. ||.+.|+++.|-|. ..+++||+.|..|+
T Consensus 44 ~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34679999999999984 99999999999999999999999888885 89999999999874 46789999999999
Q ss_pred EEeCCCCC----------eeeee-ccCCeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEecCC---------c
Q 024372 87 LWDALTGD----------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNS---------S 145 (268)
Q Consensus 87 iw~~~~~~----------~~~~~-~~~~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~---------~ 145 (268)
++|+...+ ....+ -|...|..++-.|++ ..+-+++.||+|+-+|++.+..-......+ -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99997422 11112 267778888888877 789999999999999998643211111111 1
Q ss_pred ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC--------C----------ceEEeecC-C------------CCEEEEE
Q 024372 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--------G----------KIVQTLET-K------------SPVTSAE 194 (268)
Q Consensus 146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--------~----------~~~~~~~~-~------------~~v~~~~ 194 (268)
-...|+..+|...++++.|+.|-..++||.|. + .|++.+.. + .-+.-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 23568888999999999998889999999431 1 12333321 1 0145678
Q ss_pred ECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeC
Q 024372 195 VSRDGRYITTA-DGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 195 ~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~ 226 (268)
|+|+|.-|..+ .+..|.++|+...+....|..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 99999766554 567899999977655544443
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=141.34 Aligned_cols=210 Identities=19% Similarity=0.256 Sum_probs=163.6
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
+.+..-+.|++... +..-.+++++++||.++..|-|.+....+++++.+++ -.+.|..++|+.+++.++.++.+|.|
T Consensus 292 ~~k~~~~~g~e~~~--~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKS--MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccCCCCcccch--hheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 33333344665432 2223445799999999999999999999999998887 46889999999999999888899999
Q ss_pred EEEeCCCCCeeeeeccCCeE--EEEEECCCCCEEEEeeCCCeEEEEECCCC-----CCCCeEecCCcccEEEEEEeCCCC
Q 024372 86 KLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRIFDLNRP-----DAPPREVGNSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~s~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~ 158 (268)
.+||++...+.+.+.....| ++++.++++.+||+|+..|.+.+||.++- ..+...+.+....|+.++|+|+.+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 99999999999998766655 45677889999999999999999996431 122334445566899999999888
Q ss_pred cEEEEe-eCCCeEEEEeCCCCceEEeecCC----CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc
Q 024372 159 TILSSC-TDSGGVRLWDARSGKIVQTLETK----SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF 218 (268)
Q Consensus 159 ~~~~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~ 218 (268)
.+++++ ...+.+|+-.+.+......++.. +.+.|++|+|.+-+++.+ +++.|.+|.+..|
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 654433 23468999999998888777643 358999999999999877 4689999987643
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.1e-17 Score=136.61 Aligned_cols=250 Identities=18% Similarity=0.253 Sum_probs=168.3
Q ss_pred eeecCC-CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---------CeEEEeeCccCcEEEEEecCCCcEEEEeeC
Q 024372 12 CHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (268)
Q Consensus 12 ~~~h~~-~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~ 81 (268)
..=|.. ||..+.|.+. +.+.||||+.|..|++|.+..+ ++...|..|...|..|.|+|+|.+||||+.
T Consensus 8 i~wH~~~pv~s~dfq~n--~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKN--SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred EEecCCCceEEEEeccC--cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence 333443 8999999874 3448999999999999965532 356788899999999999999999999999
Q ss_pred CCcEEEEeCC--------C-----CC---eeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC
Q 024372 82 DFTAKLWDAL--------T-----GD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144 (268)
Q Consensus 82 D~~v~iw~~~--------~-----~~---~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~ 144 (268)
++.+.+|... + .+ ..... .|.+.+..++|+|++..+++++.|+.+++||+..+. .......|
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh 164 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDH 164 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeecccc
Confidence 9999999865 2 10 11111 377788999999999999999999999999998764 34556678
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-----------CC-------------CCEEEEEECCCCc
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-----------TK-------------SPVTSAEVSRDGR 200 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-----------~~-------------~~v~~~~~s~~g~ 200 (268)
...+..++|.|-++++..-++ |+..+.+++...+.++... .. .....+.|+|+|.
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccccceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 889999999998877655444 4656666654433221111 01 1245677899999
Q ss_pred EEEEeC-----CCeE-----EEEeCCCc-eeeeEEeCCC------------------CceeeEEcCCCCCEEEeccCCCe
Q 024372 201 YITTAD-----GSSV-----KFWDANHF-GLVKGYNMPC------------------NTESASLEPKLGNIFIAGGEDMW 251 (268)
Q Consensus 201 ~l~~~~-----~~~v-----~~wd~~~~-~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~gs~d~~ 251 (268)
++++.+ ++.+ ++++-... ++....+.+. ......+..+.+-.|+++..|.
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s- 322 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS- 322 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecce-
Confidence 887543 2222 34432211 1111111110 0111122233455677777775
Q ss_pred EEEEECCCCcEEeec
Q 024372 252 VHVFDFHTGEQIAIT 266 (268)
Q Consensus 252 i~~wd~~~g~~~~~~ 266 (268)
|++||.++-+++.+.
T Consensus 323 vyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVV 337 (434)
T ss_pred EEEeccccccceEEE
Confidence 999999887777664
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.1e-17 Score=140.84 Aligned_cols=205 Identities=24% Similarity=0.296 Sum_probs=155.7
Q ss_pred EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--CEEEEeeCCCeEEEEEC
Q 024372 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--HLLLTGGFEKILRIFDL 131 (268)
Q Consensus 54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~s~~~d~~i~~~d~ 131 (268)
--.++||++.|++++..|.|..||+|+.||+||||.+.++.+++++...+.|+||+|+|.+ .+||++ ....+.+.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCc
Confidence 3457899999999999999999999999999999999999999999999999999999955 344443 3334444442
Q ss_pred CCCC------------------C------------------CCeEecCCcccEEEEEEeCCCCcEEEEeeCC--CeEEEE
Q 024372 132 NRPD------------------A------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLW 173 (268)
Q Consensus 132 ~~~~------------------~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iw 173 (268)
.-+. . .......|...|..+.|...|.++.+.+.++ ..|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 2110 0 0001112345678889988888776665543 479999
Q ss_pred eCCCCceEEeec-CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCCCe
Q 024372 174 DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMW 251 (268)
Q Consensus 174 d~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d~~ 251 (268)
++...+...-|. .++.+.++.|+|...+++.+..+.||+||+-..++++..-..+... ..++++ .|+-++.|+.|+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k 630 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKK 630 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCe
Confidence 998776665563 4567999999999999888888899999998887777666555544 445555 6999999999999
Q ss_pred EEEEECCCC
Q 024372 252 VHVFDFHTG 260 (268)
Q Consensus 252 i~~wd~~~g 260 (268)
+..||+.-+
T Consensus 631 ~~WfDldls 639 (733)
T KOG0650|consen 631 MCWFDLDLS 639 (733)
T ss_pred eEEEEcccC
Confidence 999998643
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2.9e-17 Score=128.96 Aligned_cols=243 Identities=21% Similarity=0.235 Sum_probs=174.8
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCC-------CeEEeeCCCC---------CeEEEee-CccCcEEEEEecCCCc
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGETG---------DWIGTFE-GHKGAVWSCCLDANAL 74 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~-------~i~iw~~~~~---------~~~~~~~-~h~~~V~~~~~~~~~~ 74 (268)
|.-|.++|+.++-+|. +...|+++-++- .+-||.+... |++..|. .|-+.|.++.|.|++.
T Consensus 59 f~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4468899999999995 556888875532 2357866432 3455554 4556899999999998
Q ss_pred EEEEeeCCCcEEEEeCCCCCe-eeee------ccCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc
Q 024372 75 FSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-~~~~------~~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~ 145 (268)
.+++-. |..|.+|++..... ...+ ++....++-.|+| +++.+++. .|+++..||+++..........|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 887654 88999999987765 2222 2344567788988 77777765 578999999987654444445577
Q ss_pred ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCC-CCEEEEEECCCCc--EEEEeCCCeEEEEeCCCc---
Q 024372 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHF--- 218 (268)
Q Consensus 146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~-~~v~~~~~s~~g~--~l~~~~~~~v~~wd~~~~--- 218 (268)
..+..+.|+|.-++++++|++||.|||||+|+- .+++.+..| ..+-++-|+|... +|.+++|..|.+|-...-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 789999999999999999999999999999875 467777654 5689999998653 334567888888854210
Q ss_pred --------------------------eeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 219 --------------------------GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 219 --------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+.+.+|.-+.. +..+.+++.+.=.|++=|.||.+.+=++.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 11223433333 34566776666678888999998876664
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=134.68 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=180.7
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC------CCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~------~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
.+|.+.|+++.|+. +|++|++|+.|..+++|.+.. .+.++... .|...|++++|...+.++.+|+.+++|
T Consensus 53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 58999999999985 689999999999999998754 35555443 356889999999999999999999999
Q ss_pred EEEeCCCCCeeeeeccCC---eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe--EecCCcccEEEEEEeCCCCcE
Q 024372 86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTI 160 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~ 160 (268)
.+-|+++.+.+..+.|.. .|..+..+|-.++|++.+.++.+-+||.+....... ..-+.......+.|.|..+.+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999999888766 799999999999999999999999999875432222 122233456778899999999
Q ss_pred EEEeeCCCeEEEEeCCCCc-eEEee------cC-CCCEEEEEECCCCcEEEEeCCC-eEEEEeCCCcee-eeEEeCCC--
Q 024372 161 LSSCTDSGGVRLWDARSGK-IVQTL------ET-KSPVTSAEVSRDGRYITTADGS-SVKFWDANHFGL-VKGYNMPC-- 228 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~~-~~~~~------~~-~~~v~~~~~s~~g~~l~~~~~~-~v~~wd~~~~~~-~~~~~~~~-- 228 (268)
+++.+..+.+-+||.|... .+... +. ...+.+..|+|+|+.+.+-.-+ -=.+||+-..++ +-.+.++.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 8888888899999998643 22221 22 2346788999999888765433 345678765433 22333221
Q ss_pred -----CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 229 -----~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
...+.+|. +++-+++||.+-.|++|.+
T Consensus 290 Y~N~~T~KS~~F~--~D~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 290 YCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKL 321 (609)
T ss_pred ceeeeeeeeeeee--cceeeeccCcccceEEEec
Confidence 22234443 3555889999999999987
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=9.8e-19 Score=153.84 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=180.8
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
+.||...|.|+.|. ..|.++++|+.|..++||..++++++.+.+||++.+..++.+.++.++|++|.|..|++|.+.
T Consensus 186 LlgH~naVyca~fD---rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFD---RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeec---cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 45999999999997 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC-CCCC-C---Ce---------Ee---------------
Q 024372 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDA-P---PR---------EV--------------- 141 (268)
Q Consensus 92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~-~~~~-~---~~---------~~--------------- 141 (268)
++.++..+ .|...|++++|+|-. +.+.||++++||.+ .+.. . .. ..
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 98877765 599999999999965 67899999999976 1100 0 00 00
Q ss_pred --cCCcc--------cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCCcEEE--EeCCC
Q 024372 142 --GNSSG--------SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT--TADGS 208 (268)
Q Consensus 142 --~~~~~--------~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~--~~~~~ 208 (268)
..|.. .+..+..+.+...+..+.-.+-.+.+|++.+|...+.+..+ ..+.-+.++|-...++ ++.||
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 00000 01111111111123333334457888999999888877644 4588899999775543 46789
Q ss_pred eEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 209 SVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 209 ~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
..-|||+-.+.+++.|..+.. .....|+. +|.-++..-.-+.+++..+..|+.
T Consensus 419 st~iwdi~eg~pik~y~~gh~kl~d~kFSq-dgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQ-DGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceEeeecccCCcceeeecccceeeccccCC-CCceEecCCCCCceEEeccCCCcc
Confidence 999999988888888876533 33344444 688888877778888887655543
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=3.7e-17 Score=142.93 Aligned_cols=219 Identities=18% Similarity=0.143 Sum_probs=147.0
Q ss_pred CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (268)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 116 (268)
+.++.+||.... ....+..|...+...+|+||++.++..+.+ ..|++||+.++...............+|+||++.
T Consensus 183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 568889997544 355677788899999999999999887654 4799999988764333222333446889999998
Q ss_pred EEEee-CCCeEEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEE
Q 024372 117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTS 192 (268)
Q Consensus 117 l~s~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~ 192 (268)
|+.++ .++.+.+| |+..+. ......+...+....|+|++..++.++..++..+||++... .....+.... ..
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~ 337 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YS 337 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CC
Confidence 88764 67776666 554332 33444455567788999998877777666688888876432 2223333222 45
Q ss_pred EEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEEC--CCCcEEee
Q 024372 193 AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF--HTGEQIAI 265 (268)
Q Consensus 193 ~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~--~~g~~~~~ 265 (268)
..|+|||++++......+.+||+.++....... ........++| +|++++.++.++.+++|++ .+|+.+..
T Consensus 338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 338 AQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred ccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 789999999876544556679998765432211 11234556777 6999999988887777764 24655443
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=2e-16 Score=124.46 Aligned_cols=240 Identities=17% Similarity=0.254 Sum_probs=174.7
Q ss_pred CeeeEEEecCCCCCcEEEEEeCC----CCeEEe--eCCCCCeEEEee-CccCcEEEEEecCCC-----cEEEEeeCCCcE
Q 024372 18 PVVDLFYSPITPDGFFLVSASKD----SSPMLR--NGETGDWIGTFE-GHKGAVWSCCLDANA-----LFSASGSADFTA 85 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d----~~i~iw--~~~~~~~~~~~~-~h~~~V~~~~~~~~~-----~~l~s~s~D~~v 85 (268)
++.+++|+.....+.+||.||.- ..|+|- +..+++.+..-. .|..++..+.|.|+. ++|||.+. .+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eE
Confidence 56788887654457789988753 344543 555666654332 488999999999886 35677643 89
Q ss_pred EEEeCCCCCeeee----e------ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCcccEEEEE
Q 024372 86 KLWDALTGDEKHS----F------EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVA 152 (268)
Q Consensus 86 ~iw~~~~~~~~~~----~------~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~ 152 (268)
|+|.+........ + .+..++++..|+. +.+++.+.+-|.+..+||++++.. ...+...|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999874221111 1 2445788888887 788999999999999999987522 2344456888999999
Q ss_pred EeCCCCcEEEEeeCCCeEEEEeCCCCceEEe-ec---CCCCEEEEEECCCC-cEEEE--eCCCeEEEEeCCCc-eeeeEE
Q 024372 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LE---TKSPVTSAEVSRDG-RYITT--ADGSSVKFWDANHF-GLVKGY 224 (268)
Q Consensus 153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~---~~~~v~~~~~s~~g-~~l~~--~~~~~v~~wd~~~~-~~~~~~ 224 (268)
|...+..+|++.+.||.+|+||+|..+.-.. ++ .+.+...++++++. +++++ -+...|.+-|+|.- ..+..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 9987778899999999999999998654322 22 25678889998865 55654 35678999999863 344444
Q ss_pred eCC-CCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 225 NMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 225 ~~~-~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
..+ ..+..+.+.|.+...+.+||.|..+.+||+.+
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 433 34667888898899999999999999999864
No 177
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=3.8e-17 Score=141.28 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=153.1
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCC-----eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSS-----PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~-----i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
++||--+|.+++.+| +|+++|++..... |++|+...-..++.+.+|.--|..++|+||+++|++.|+|.++.
T Consensus 521 LYGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 521 LYGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 469999999999985 8999999977654 47898887777778999999999999999999999999999999
Q ss_pred EEeCCCCCeee-----eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC--CCCCe-EecCCcccEEEEEEeCCCC
Q 024372 87 LWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR-EVGNSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 87 iw~~~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~ 158 (268)
+|......... .-.|...|..+.|+|++..++|+|.|+++++|..... +...+ ....+..+|+.+++.|-..
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 99985443211 1247888999999999999999999999999987654 22222 2234567899999876443
Q ss_pred c----EEEEeeCCCeEEEEeCCC-CceE----Eee--------cCCCCEEEEEECCCC-----------cEEEEeCCCeE
Q 024372 159 T----ILSSCTDSGGVRLWDARS-GKIV----QTL--------ETKSPVTSAEVSRDG-----------RYITTADGSSV 210 (268)
Q Consensus 159 ~----~~~~~~~d~~i~iwd~~~-~~~~----~~~--------~~~~~v~~~~~s~~g-----------~~l~~~~~~~v 210 (268)
. +++.|...|.|.+|.... .++. ..+ .+...|+.+.|.|.- ++.++++|..+
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~v 757 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESV 757 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccccee
Confidence 3 788999999999998541 1111 111 112358889998751 22346788899
Q ss_pred EEEeCC
Q 024372 211 KFWDAN 216 (268)
Q Consensus 211 ~~wd~~ 216 (268)
|++++.
T Consensus 758 ri~nv~ 763 (764)
T KOG1063|consen 758 RIFNVD 763 (764)
T ss_pred EEeecc
Confidence 998753
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.2e-14 Score=123.17 Aligned_cols=243 Identities=16% Similarity=0.169 Sum_probs=157.3
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCC-CCCe--EEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEe
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGE-TGDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWD 89 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~-~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~ 89 (268)
+.+....++++| +|++|++++ .++.+.+|+.. ++++ +.... ..+....++++|+++++++++ .++.+.+|+
T Consensus 33 ~~~~~~~l~~sp---d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 33 VPGQVQPMVISP---DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred cCCCCccEEECC---CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence 334566778874 888887664 57888889886 4443 23222 223456789999999887766 488999999
Q ss_pred CCCCC----eeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCC----e-EecCCcccEEEEEEeCCCCc
Q 024372 90 ALTGD----EKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPP----R-EVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 90 ~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~ 159 (268)
+.+.. ....+........+.++|+++.+++++ .++.|.+||++...... . ...........+.|.|++..
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY 188 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE
Confidence 86432 222233333456788999998886554 66999999987532111 0 01111223467888998888
Q ss_pred EEEEeeCCCeEEEEeCCC--C--ceEEeecCC-------CCEEEEEECCCCcEEEEe--CCCeEEEEeCCCce----eee
Q 024372 160 ILSSCTDSGGVRLWDARS--G--KIVQTLETK-------SPVTSAEVSRDGRYITTA--DGSSVKFWDANHFG----LVK 222 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~--~--~~~~~~~~~-------~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~----~~~ 222 (268)
++++...+++|.+||+.. + +.++.+... .....+.++|+|+++.++ .++.|.+|++.... .+.
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 877776679999999973 3 334443211 113468899999988765 35799999985432 233
Q ss_pred EEeCCCCceeeEEcCCCCCEEEecc-CCCeEEEEECC--CCcE
Q 024372 223 GYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFH--TGEQ 262 (268)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~~--~g~~ 262 (268)
.......+..+.+++ +|++++++. .++.|.+|++. +|..
T Consensus 269 ~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 269 HQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEeccccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 333333445667777 577777655 48899999863 4543
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.6e-15 Score=136.89 Aligned_cols=244 Identities=16% Similarity=0.258 Sum_probs=161.1
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCcc---CcEEEEEec--CCCcEEEEeeCCCcEEEEeC
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK---GAVWSCCLD--ANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~---~~V~~~~~~--~~~~~l~s~s~D~~v~iw~~ 90 (268)
..+-..+.|+|..| .++++..-..|+|||-+.++.+..|..+. ..|..+.+- .|..++.+|+.||.||||+-
T Consensus 1064 ~~~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 33456788888766 67777666788999999999988887553 457777764 34467889999999999965
Q ss_pred CCCC-----eeeeec--------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 91 LTGD-----EKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 91 ~~~~-----~~~~~~--------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
.... .+..+. ..+.--.+.|..+...|++++.-+.|++||...+.............++.+.-....
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 4332 222221 011113356777655666666689999999876543222222334456666544455
Q ss_pred CcEEEEeeCCCeEEEEeCCCCce---EEeec-CC--CCEEEEEECCCC--cEEEEeCCCeEEEEeCCCceeeeEEeC---
Q 024372 158 QTILSSCTDSGGVRLWDARSGKI---VQTLE-TK--SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNM--- 226 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~~---~~~~~-~~--~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~~~~~~~--- 226 (268)
++++++|..||.||+||.|.... +.... +. .+|..+.+.++| .+++++.+|.|++||+|..........
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 67888999999999999987532 33332 32 338888888765 456667899999999986322221221
Q ss_pred ---CCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 227 ---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 227 ---~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.........+. ....+++|+. +.|.+|++. |+++.+
T Consensus 1301 ~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred cccCccceeeeecc-CCCeeeecCc-ceEEEEecC-hhhhcc
Confidence 11234444444 5888999988 999999985 776654
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.1e-17 Score=136.12 Aligned_cols=213 Identities=22% Similarity=0.262 Sum_probs=143.9
Q ss_pred ceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC------CCC----CeEEEeeCccCcEEEEEecCCC
Q 024372 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG------ETG----DWIGTFEGHKGAVWSCCLDANA 73 (268)
Q Consensus 4 ~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~------~~~----~~~~~~~~h~~~V~~~~~~~~~ 73 (268)
.+++....|++|.+||.+++..+ .+.++.+|+.|++|+.|++ .+. .+...|.||++.|+.+++++..
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~ 408 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK 408 (577)
T ss_pred cceeeeEEEecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc
Confidence 46777888899999999999974 7899999999999999933 221 3567889999999999999999
Q ss_pred cEEEEeeCCCcEEEEeCCCCCeeeeecc-C--CeEEEEEECCCC-CEEEEeeCCCeEEEEECCCCCCCCeEec-----C-
Q 024372 74 LFSASGSADFTAKLWDALTGDEKHSFEH-K--HIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG-----N- 143 (268)
Q Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~--~~v~~v~~~~~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~-----~- 143 (268)
.+|++++.||++|+|+.....+ .++.- . ..-.++.+-... ...++...-+.--++++.... ....+. .
T Consensus 409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGP 486 (577)
T ss_pred cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcc
Confidence 9999999999999999876655 33321 1 112233332211 111111111111122222111 001110 0
Q ss_pred -CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372 144 -SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220 (268)
Q Consensus 144 -~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~ 220 (268)
....+..+.+.|..+ +..++-+|+.|+++|..+++.++... +...+.++++.|+|-+|+++ .|+.+++|.+..-.+
T Consensus 487 ~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 112345556556554 55566788999999999999988765 44568999999999998775 689999999865444
Q ss_pred ee
Q 024372 221 VK 222 (268)
Q Consensus 221 ~~ 222 (268)
+.
T Consensus 566 ~~ 567 (577)
T KOG0642|consen 566 VL 567 (577)
T ss_pred ee
Confidence 43
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=2.1e-15 Score=118.67 Aligned_cols=197 Identities=19% Similarity=0.218 Sum_probs=147.2
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe-EEEe-----eCccCcEEEEEecC--CCcEEEEeeCCCcE
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTF-----EGHKGAVWSCCLDA--NALFSASGSADFTA 85 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~-~~~~-----~~h~~~V~~~~~~~--~~~~l~s~s~D~~v 85 (268)
.|-+.|.++.|.| ++..||+-. |..|.+|+...+.. +..+ .+|+....+-+|+| ++..+++. .|+++
T Consensus 121 eavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 121 EAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred HHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 3455899999997 666777554 88999999887653 3333 23566677778888 45566554 58999
Q ss_pred EEEeCCCCCeeeeec--cCCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~--~~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
+.||+.+..+...++ |...|+.+.|+|+.+ +|++|+.|+.+++||.+..+.+.++...|..+|.++.|+|....++.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999888877775 778899999999765 78899999999999999888888888889999999999998888888
Q ss_pred EeeCCCeEEEEeCCCCc---e--------------------------EEeec-CCCCEEEEEECCCCcEEEE--eCCCeE
Q 024372 163 SCTDSGGVRLWDARSGK---I--------------------------VQTLE-TKSPVTSAEVSRDGRYITT--ADGSSV 210 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~---~--------------------------~~~~~-~~~~v~~~~~s~~g~~l~~--~~~~~v 210 (268)
+++.|..|.+|...+-. . +.++. +...|.+++||.-.-.+++ +-||.+
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 88888999999653211 0 11221 2235888888876655543 356766
Q ss_pred EEEeC
Q 024372 211 KFWDA 215 (268)
Q Consensus 211 ~~wd~ 215 (268)
.|=.+
T Consensus 356 iIs~V 360 (370)
T KOG1007|consen 356 IISSV 360 (370)
T ss_pred EeecC
Confidence 66443
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.6e-16 Score=127.77 Aligned_cols=191 Identities=21% Similarity=0.204 Sum_probs=141.7
Q ss_pred eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (268)
..++|++ +|..|++|+.||++|||+.-....+.....|.+.|.++.|+||+++|++-+.| ..+||+..++......
T Consensus 148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 5678874 88999999999999999977777777788899999999999999999999999 9999999998665544
Q ss_pred c---cCCeEEEEEECCCC-----CEEEEeeCCCeEEEEECCCCCC----CCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 100 E---HKHIVRACAFSEDT-----HLLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 100 ~---~~~~v~~v~~~~~~-----~~l~s~~~d~~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
. .......|.|+.++ .+++.-..-+.++.|++..... +.+........+++++.++++ .+++.|+-|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEeccC
Confidence 3 22335567787766 3333344445667666532221 122222223368899987765 566777888
Q ss_pred CeEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEE-eCCCeEEEEeC
Q 024372 168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWDA 215 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~ 215 (268)
|.|-|+++.+-+.++..+ |...|..+.|+|+.+++++ +.+.+..+..+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999988888775 3456999999999998865 55666666554
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=5.3e-14 Score=119.15 Aligned_cols=222 Identities=13% Similarity=0.195 Sum_probs=147.0
Q ss_pred EEEeCCCCeEEeeCCC-CC--eEEEeeCccCcEEEEEecCCCcEEEEe-eCCCcEEEEeCCC-CCe--eeeeccCCeEEE
Q 024372 35 VSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALT-GDE--KHSFEHKHIVRA 107 (268)
Q Consensus 35 ~s~s~d~~i~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~~l~s~-s~D~~v~iw~~~~-~~~--~~~~~~~~~v~~ 107 (268)
++...|+.|.+|++.+ ++ ++.++. +.+....++++|++++|+.+ ..++.|.+|++.. +.. ............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3457799999999964 44 556665 33456678999999987654 4588999999863 322 222233334567
Q ss_pred EEECCCCCEEEEeeC-CCeEEEEECCCCCCCC---eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE-
Q 024372 108 CAFSEDTHLLLTGGF-EKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ- 182 (268)
Q Consensus 108 v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~- 182 (268)
+.++|+++.+++++. ++.+.+|+++...... .... .......++++|++..+++++..++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998888764 7889999986432111 1111 112345677889888888888888999999997633221
Q ss_pred ------eecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC----ceeeeEEeC-CC------CceeeEEcCCCCCEE
Q 024372 183 ------TLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH----FGLVKGYNM-PC------NTESASLEPKLGNIF 243 (268)
Q Consensus 183 ------~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~----~~~~~~~~~-~~------~~~~~~~~~~~~~~~ 243 (268)
..........++|+|+|+++.+. .++.|.+||+.. .+.+..+.. +. ....+.++| +++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 12223346789999999987554 378999999863 233433322 11 111355666 68877
Q ss_pred Eecc-CCCeEEEEECCC
Q 024372 244 IAGG-EDMWVHVFDFHT 259 (268)
Q Consensus 244 ~~gs-~d~~i~~wd~~~ 259 (268)
+++. .++.|.+|++.+
T Consensus 243 yv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 243 YACDRTASLISVFSVSE 259 (330)
T ss_pred EEecCCCCeEEEEEEeC
Confidence 7764 478899999854
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=6.6e-15 Score=128.83 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=142.6
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCe--EEEeeCccCcEEEEEecCCCcEEEEee-CC
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGS-AD 82 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D 82 (268)
+..+.+|..++.+..|+| ||++|+.++.+. +|.+||+.+++. +..+.+|. ..++|+||++.|+.++ .+
T Consensus 196 ~~~lt~~~~~v~~p~wSP---DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSP---DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred ceEeccCCCccccceEcC---CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecC
Confidence 455667888999999985 999999887653 588999988853 44445543 3578999999887654 68
Q ss_pred CcEEEE--eCCCCCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 83 FTAKLW--DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 83 ~~v~iw--~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
+...|| |+.++.......+...+....|+||++.++.++ .++..++|+++......... .+.+ ....|+|++..
T Consensus 270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 876665 666665544434555677899999999776554 57788888765432222333 2222 34678898887
Q ss_pred EEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCC--CceeeeEEeCCCC-ceeeEE
Q 024372 160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDAN--HFGLVKGYNMPCN-TESASL 235 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~--~~~~~~~~~~~~~-~~~~~~ 235 (268)
++.++. + .+.+||+.+++....... .......|+|||++++. +.++.+++|++. +++.++.+..+.. ....+|
T Consensus 347 ia~~~~-~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w 423 (429)
T PRK01742 347 LVMING-D-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW 423 (429)
T ss_pred EEEEcC-C-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence 665544 3 466699998876543322 22356789999998875 456666766642 3445555543332 344555
Q ss_pred cC
Q 024372 236 EP 237 (268)
Q Consensus 236 ~~ 237 (268)
+|
T Consensus 424 sp 425 (429)
T PRK01742 424 SP 425 (429)
T ss_pred CC
Confidence 54
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.2e-14 Score=129.05 Aligned_cols=256 Identities=20% Similarity=0.314 Sum_probs=183.8
Q ss_pred CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc---EEE
Q 024372 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL---FSA 77 (268)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~ 77 (268)
||+.+..+|..+.|-+.--....|+ +|+++++.. .+-.|+||...+|+++..+.+|.+++..+.+.|... ++.
T Consensus 1 ~~~e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~ 76 (792)
T KOG1963|consen 1 MDRESGGKPALLGGRNGNKSPAVFS---NDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLI 76 (792)
T ss_pred Cccccccceeeeccccceecccccc---cCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEE
Confidence 6777888888776655555566676 588888754 556789999999999999999999999999876543 566
Q ss_pred EeeCCCcEEEEeCCCCCeeee-----------------------------------------------------------
Q 024372 78 SGSADFTAKLWDALTGDEKHS----------------------------------------------------------- 98 (268)
Q Consensus 78 s~s~D~~v~iw~~~~~~~~~~----------------------------------------------------------- 98 (268)
+++.||+|++||...+..+.+
T Consensus 77 ~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 77 VCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhh
Confidence 899999999999732110000
Q ss_pred ---------------------------------------------eccCCeEEEEEECCCCCEEEEeeCCCeEEEEE-CC
Q 024372 99 ---------------------------------------------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LN 132 (268)
Q Consensus 99 ---------------------------------------------~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d-~~ 132 (268)
..|...+++.++||++.++++|..||.|.+|. ..
T Consensus 157 ~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred hhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 01233467889999999999999999999994 33
Q ss_pred --CCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEE-EeCCC
Q 024372 133 --RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGS 208 (268)
Q Consensus 133 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~-~~~~~ 208 (268)
......+.+..|..+|.+++|++++.+++++| ..+-+.+|.+.+++ .+.++ ..+++..+.++||+.+.+ .-+|.
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEeecc-cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 22344567778888999999999988777655 55999999999988 33333 467899999999998765 44677
Q ss_pred eEEEEeCCCcee---eeEEeCC--------C-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 209 SVKFWDANHFGL---VKGYNMP--------C-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 209 ~v~~wd~~~~~~---~~~~~~~--------~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
.|.+-..-+... +.++... . -...+++.|. -..++-.+..+.|.+||+.+.+.+
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEecccccee
Confidence 777665533322 3332222 1 1233455563 455677788888999998765544
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=133.64 Aligned_cols=163 Identities=20% Similarity=0.346 Sum_probs=129.0
Q ss_pred eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECC--CCCEEEEeeCCCeEEE
Q 024372 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSE--DTHLLLTGGFEKILRI 128 (268)
Q Consensus 53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~--~~~~l~s~~~d~~i~~ 128 (268)
+.+.|.||++-|.++.|+.+|.+|+|||.|-.+.|||....+.++.+. |..-|.++.|-| +..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999999888888775 777899999988 6779999999999999
Q ss_pred EECCC---------CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc-eEE------ee----cCCC
Q 024372 129 FDLNR---------PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQ------TL----ETKS 188 (268)
Q Consensus 129 ~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~------~~----~~~~ 188 (268)
||+.. ..........|...|..++..|.+++.+.++++||+|+-+|+|.-. |-. .+ ..--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99874 1222334455677788888889999999999999999999998621 111 11 0113
Q ss_pred CEEEEEECCCCc-EEEE-eCCCeEEEEeC
Q 024372 189 PVTSAEVSRDGR-YITT-ADGSSVKFWDA 215 (268)
Q Consensus 189 ~v~~~~~s~~g~-~l~~-~~~~~v~~wd~ 215 (268)
...+++++|... +++. +++-.+++||.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 467999999875 4444 56778999994
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=6.1e-16 Score=133.07 Aligned_cols=205 Identities=23% Similarity=0.238 Sum_probs=150.9
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---Ce--EEEeeCccC-cEEEEEecCCCcEEEEeeCCCc
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DW--IGTFEGHKG-AVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~--~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
.+.+|.+-|+++.|+|.. | .+||+||+|..++||.+..| ++ ....-+|+. .|.++.|+|...-+...+..++
T Consensus 74 ~l~~H~d~VtDl~FspF~-D-~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFA-D-ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccc-h-hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 467999999999999975 4 48999999999999987744 11 111224544 6788899987654444456789
Q ss_pred EEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc-EEEEEEeCCCCcEEE
Q 024372 85 AKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQTILS 162 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~ 162 (268)
++|||+.+++....+. |.+.|.+..|+.||++|++.+.|++|++||.+..-..++....|.+. -.-+.|.-.-..+++
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis 231 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS 231 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence 9999999998877764 89999999999999999999999999999988654445544445432 234677665557888
Q ss_pred EeeCC---CeEEEEeCCCC-ceEEeec--CCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCC
Q 024372 163 SCTDS---GGVRLWDARSG-KIVQTLE--TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH 217 (268)
Q Consensus 163 ~~~~d---~~i~iwd~~~~-~~~~~~~--~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~ 217 (268)
+|.+. +.|++||++.. ..+++++ ....+.--.+.||-++++-+ .+..+.++.+..
T Consensus 232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 87654 47999999874 4555554 44456666789998876544 345666666543
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=2.8e-15 Score=122.65 Aligned_cols=252 Identities=18% Similarity=0.261 Sum_probs=166.7
Q ss_pred eeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC--------C-----C---CeEEEeeCccCcEEEEE
Q 024372 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------T-----G---DWIGTFEGHKGAVWSCC 68 (268)
Q Consensus 5 ~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~--------~-----~---~~~~~~~~h~~~V~~~~ 68 (268)
+++-.-.|..|...|+++.|+| +|..||+|+.++++.+|-.. + . .....+++|...|+.++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~ 130 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLA 130 (434)
T ss_pred eEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhh
Confidence 4445555678999999999995 89999999999999999655 2 1 12456789999999999
Q ss_pred ecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE-------
Q 024372 69 LDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE------- 140 (268)
Q Consensus 69 ~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~------- 140 (268)
|+|++.++++++.|.++++||+..++....+ .|...+..++|.|-.+.+++-+.|+..+.+++.........
T Consensus 131 Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~ 210 (434)
T KOG1009|consen 131 WSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA 210 (434)
T ss_pred ccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee
Confidence 9999999999999999999999999987766 48899999999999999999998987777665432111000
Q ss_pred -ec-CCcccE-------------EEEEEeCCCCcEEEEeeC---------CCeEEEEeCCC-CceEEeecC-CCCEEEEE
Q 024372 141 -VG-NSSGSI-------------RTVAWLHSDQTILSSCTD---------SGGVRLWDARS-GKIVQTLET-KSPVTSAE 194 (268)
Q Consensus 141 -~~-~~~~~v-------------~~~~~~~~~~~~~~~~~~---------d~~i~iwd~~~-~~~~~~~~~-~~~v~~~~ 194 (268)
.. +..+.+ ..++|.|++.. +++... .++..+++-.. .++...++. ..+...+.
T Consensus 211 ~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l-lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr 289 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL-LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR 289 (434)
T ss_pred cccCCCCcceeeeeecCchhhhhhhcccCCCCcE-EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEE
Confidence 00 001111 23456666543 333210 11222332110 111111211 11222222
Q ss_pred EC------------------CCCcEEEEeCCCeEEEEeCCCceeeeEE-eC-CCCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372 195 VS------------------RDGRYITTADGSSVKFWDANHFGLVKGY-NM-PCNTESASLEPKLGNIFIAGGEDMWVHV 254 (268)
Q Consensus 195 ~s------------------~~g~~l~~~~~~~v~~wd~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~ 254 (268)
++ |.+..++.+....|.+||.+.-.++... ++ ......++|++ +|..++..|.||.+.+
T Consensus 290 ~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 290 FSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSL 368 (434)
T ss_pred eeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEE
Confidence 22 3444455667789999999875544322 11 23456778887 6999999999999888
Q ss_pred EECCCCc
Q 024372 255 FDFHTGE 261 (268)
Q Consensus 255 wd~~~g~ 261 (268)
--++..|
T Consensus 369 vtfe~~e 375 (434)
T KOG1009|consen 369 VTFEPWE 375 (434)
T ss_pred EEEcchh
Confidence 7765433
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.9e-15 Score=133.28 Aligned_cols=244 Identities=14% Similarity=0.157 Sum_probs=165.5
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEee---Cc----cCcEEEEEecCCCcEEEEeeCCC
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFE---GH----KGAVWSCCLDANALFSASGSADF 83 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~---~h----~~~V~~~~~~~~~~~l~s~s~D~ 83 (268)
...|+.+.+-+. .|-.+|++|+.||.||||+... .|++.-+. ++ .+.-.-+.|-....+|+++|.-.
T Consensus 1109 ~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINE-QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecc-cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 346888888653 3667999999999999996543 34544332 22 11113346777666777777788
Q ss_pred cEEEEeCCCCCeeeeecc--CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCC--CCeEecCCccc--EEEEEEeCC
Q 024372 84 TAKLWDALTGDEKHSFEH--KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGS--IRTVAWLHS 156 (268)
Q Consensus 84 ~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~ 156 (268)
.|||||.....+...+.. ...++++.-+. .|+++++|..||.+++||.+.... .......|+.. |..+.+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 999999988887777653 34566665443 578999999999999999875433 33344455555 888888775
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCceEEe--ec----CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCc--eeeeEEe---
Q 024372 157 DQTILSSCTDSGGVRLWDARSGKIVQT--LE----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF--GLVKGYN--- 225 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~----~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~--~~~~~~~--- 225 (268)
+---+++++.+|.|++||+|....... .. ..+...++.++++...+++|+.+.|+||++... ..++.+.
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccc
Confidence 544455666779999999998422211 11 123488999999999999988799999998532 1222111
Q ss_pred CC-C-CceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372 226 MP-C-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 226 ~~-~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~ 261 (268)
.+ . ...+..|+| -.-++++|+.|..|.+|....++
T Consensus 1348 ~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 11 1 123455555 46678888999999999865543
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=9.5e-15 Score=116.40 Aligned_cols=232 Identities=15% Similarity=0.172 Sum_probs=168.4
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC---CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~---~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw 88 (268)
++--.++|++-+|++ |+..+|.+-+...+.||....+ +..++++.|...|..+.|.|.+..|++|+.|...++|
T Consensus 6 ~~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 334467999999984 9999999999999999876654 4678999999999999999999999999999999999
Q ss_pred eCC-CCC---eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC---CCeEecCCcccEEEEEEeCCCCcEE
Q 024372 89 DAL-TGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 89 ~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
... .+. ....+.+....++|.|+|.++.+++|+..+.|-+|=.+.+.- .......+...|.+++|.|++ .++
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLl 161 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLL 161 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-cee
Confidence 883 333 223346788899999999999999999999999987654321 111223456678999998865 466
Q ss_pred EEeeCCCeEEEEeCC-----C-------------CceEEee-cCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCce-e
Q 024372 162 SSCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG-L 220 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~-~ 220 (268)
++|+-|+..|++..- . |+.+.++ ...+.+..+.|+|+|..|+ .+.|..+.+-|...-. .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 777778999998542 1 1122223 2234589999999998886 5788899988875432 3
Q ss_pred eeEEeCCC-CceeeEEcCCCCCEEEeccCC
Q 024372 221 VKGYNMPC-NTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d 249 (268)
+....... +..++.+. ....+++++.|
T Consensus 242 v~~~~~~~lP~ls~~~i--se~~vv~ag~~ 269 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWI--SENSVVAAGYD 269 (361)
T ss_pred ccchhhccCCceeeEee--cCCceeecCCC
Confidence 33333322 23333333 24556677766
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-14 Score=126.88 Aligned_cols=241 Identities=16% Similarity=0.182 Sum_probs=175.4
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.|+..+++.+++| .+.++|+|-.||.|.+|.-.. + .....|.-|.+.|.+++|+++|.+|+|||+.+.+-+|.
T Consensus 203 ~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 5888889999986 789999999999999995332 2 23456788999999999999999999999999999999
Q ss_pred CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eE--------ecCCcccEEEEEEeCCCCc
Q 024372 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--RE--------VGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~--------~~~~~~~v~~~~~~~~~~~ 159 (268)
+.+++...-..-..+|..+.++||+...+....|+.|.+-...+-..+. +. ....++-.+.++..|.-.
T Consensus 280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~- 358 (792)
T KOG1963|consen 280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN- 358 (792)
T ss_pred ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-
Confidence 9999854444577899999999999999999999999988653211111 11 111234456667777333
Q ss_pred EEEEeeCCCeEEEEeCCCCceEEeecC------------CCCEEEEEECCCCcEEEEeC---------CC--eEEEEeC-
Q 024372 160 ILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDA- 215 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~s~~g~~l~~~~---------~~--~v~~wd~- 215 (268)
.++-++..+.|.+||+-+-+.+..+.. +..+..++.+..|.++++.+ |+ .+++|-.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 344455669999999988776655431 12456777788899988753 22 4789965
Q ss_pred ---CCceeeeEEeCCCC--ceeeEEcCCCCC-EEEeccCCCeEEEEECC
Q 024372 216 ---NHFGLVKGYNMPCN--TESASLEPKLGN-IFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 216 ---~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~gs~d~~i~~wd~~ 258 (268)
+++.+......|.+ ....++.++..+ +++++|.|+.+++|-+.
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 34444455555544 234444444444 99999999999999873
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=5.1e-16 Score=133.51 Aligned_cols=198 Identities=19% Similarity=0.191 Sum_probs=144.9
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------eEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEE
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLW 88 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw 88 (268)
.-|.++.|+|. |-+.||.|+.|+.|++|.+..+. .-..+.+|..+|+++.|+|-- ..|++++.|.+|++|
T Consensus 628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 46889999996 55789999999999999877642 346678899999999999854 678999999999999
Q ss_pred eCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcc-cEEEEEEeCCCCcEEEEeeC
Q 024372 89 DALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQTILSSCTD 166 (268)
Q Consensus 89 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~ 166 (268)
|+.++.....+ .|.+.|..++|+|+|+.+++.+.|+++++|..++.+...++-....+ .---|.|..++..++.+|.+
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99988876665 59999999999999999999999999999998876655544332222 11235677777777777654
Q ss_pred C---CeEEEEeCCCCc--eEEeec--CCCCEEEEEECCCCcE-EEEe-CCCeEEEEeCC
Q 024372 167 S---GGVRLWDARSGK--IVQTLE--TKSPVTSAEVSRDGRY-ITTA-DGSSVKFWDAN 216 (268)
Q Consensus 167 d---~~i~iwd~~~~~--~~~~~~--~~~~v~~~~~s~~g~~-l~~~-~~~~v~~wd~~ 216 (268)
. +.|.+||.++-. .+.+.. ......--.+.+|... +.++ .|..|.+|.+-
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 2 468888877533 333322 1111222233456544 3455 57889988874
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-14 Score=132.77 Aligned_cols=220 Identities=16% Similarity=0.250 Sum_probs=156.8
Q ss_pred eeCCCCCeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC-------eeeeec-cCCeEEEEEECCCCCE
Q 024372 46 RNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD-------EKHSFE-HKHIVRACAFSEDTHL 116 (268)
Q Consensus 46 w~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~-------~~~~~~-~~~~v~~v~~~~~~~~ 116 (268)
|+. .|.++..+..|+..|..++.++.. .+++|||.||+||+|+...-. ...++. -...+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 544 478899999999999888887555 999999999999999985322 233343 4567888888899999
Q ss_pred EEEeeCCCeEEEEECCCCCCC---CeEe---c-CCcc-cEEEEEEeCCCCc-EEEEeeCCCeEEEEeCCCCceEEeec--
Q 024372 117 LLTGGFEKILRIFDLNRPDAP---PREV---G-NSSG-SIRTVAWLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLE-- 185 (268)
Q Consensus 117 l~s~~~d~~i~~~d~~~~~~~---~~~~---~-~~~~-~v~~~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~-- 185 (268)
+|.++.||.|++..++..... .... . ...+ .+.+.++....+. +++.++.-+.|..||+++.....+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999988652111 1110 0 1122 3444455443333 77777888899999999987766554
Q ss_pred -CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCC--ceeeEEc--CCCCCEEEecc--CCCeEEEEEC
Q 024372 186 -TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLE--PKLGNIFIAGG--EDMWVHVFDF 257 (268)
Q Consensus 186 -~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~gs--~d~~i~~wd~ 257 (268)
.++-|.+++++|.+..++.| +.|.+-+||+|-..++..+.++.. +.....+ ++.....++++ ....|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 35779999999999998776 468899999998888888776543 3333333 33236666544 4678999999
Q ss_pred CCCcEEeec
Q 024372 258 HTGEQIAIT 266 (268)
Q Consensus 258 ~~g~~~~~~ 266 (268)
.+|....++
T Consensus 1273 ~~g~~~~vl 1281 (1431)
T KOG1240|consen 1273 ETGLRQTVL 1281 (1431)
T ss_pred ccCcceEEE
Confidence 988665543
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.2e-13 Score=119.59 Aligned_cols=218 Identities=13% Similarity=0.068 Sum_probs=144.9
Q ss_pred CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE
Q 024372 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL 117 (268)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 117 (268)
..|.++|.. |.....+..|...+...+|+||++.|+..+. +..|++||+.++.......++..+....|+|||+.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 356677764 4455567778889999999999998887653 468999999888765444455667788999999876
Q ss_pred E-EeeCCCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEE
Q 024372 118 L-TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTS 192 (268)
Q Consensus 118 ~-s~~~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~ 192 (268)
+ +.+.++. |.+||+.++. ...+..+.+......|+|++..++.++..++ .|.++|+..++.............
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 5 5555554 6666876543 2334444445567899999887766554333 688889887765444333444667
Q ss_pred EEECCCCcEEEEe-C-C--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC-C-----CeEEEEECCCCcE
Q 024372 193 AEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D-----MWVHVFDFHTGEQ 262 (268)
Q Consensus 193 ~~~s~~g~~l~~~-~-~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-d-----~~i~~wd~~~g~~ 262 (268)
..|+|+|+.++.. . . ..|.+||+.... .+.+..........++| +|++++..+. . ..++++|+..++.
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 8899999988643 2 2 368888975432 23333222345567777 5877765433 2 3688889865554
Q ss_pred E
Q 024372 263 I 263 (268)
Q Consensus 263 ~ 263 (268)
.
T Consensus 417 ~ 417 (435)
T PRK05137 417 R 417 (435)
T ss_pred E
Confidence 3
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=4.2e-14 Score=129.57 Aligned_cols=245 Identities=16% Similarity=0.106 Sum_probs=164.4
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC-------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v 85 (268)
+.|+..|..++-++ +++.+++|||.||+|++|+..+- +...++.--...+.++.+.+.+..+|.++.||.|
T Consensus 1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 57888888888775 67789999999999999987652 1223333345688889999999999999999999
Q ss_pred EEEeCCCCCeee-e------ec-c--CCeEEEEEECC-CCC-EEEEeeCCCeEEEEECCCCCCCCe-EecCCcccEEEEE
Q 024372 86 KLWDALTGDEKH-S------FE-H--KHIVRACAFSE-DTH-LLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVA 152 (268)
Q Consensus 86 ~iw~~~~~~~~~-~------~~-~--~~~v~~v~~~~-~~~-~l~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~ 152 (268)
++.++...+... . .. + +..|...+|.. ... .++.+..-+-|..||++....... ......|.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 999986632211 1 11 1 12344445544 223 677777788899999875432222 1223357899999
Q ss_pred EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec--CCCCEEEEEECCCCc---EEE-Ee--CCCeEEEEeCCCceeeeEE
Q 024372 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGR---YIT-TA--DGSSVKFWDANHFGLVKGY 224 (268)
Q Consensus 153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~---~l~-~~--~~~~v~~wd~~~~~~~~~~ 224 (268)
..|.+.+++++ +..|.+-+||+|=+..+...+ .+.++..+..+|-.. ..+ ++ ..+.|.+|++.++.+-..+
T Consensus 1203 idp~~~WlviG-ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPWCNWLVIG-TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ecCCceEEEEe-cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 98887766654 555999999999777776554 456777777776433 333 33 3578999999887554444
Q ss_pred eCC-----------CC------ce--eeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 225 NMP-----------CN------TE--SASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 225 ~~~-----------~~------~~--~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
-.. .+ .. ..+.....+..+.+|+.|+.|+.||...-
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 222 11 00 11112224668889999999999997543
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=126.30 Aligned_cols=251 Identities=17% Similarity=0.176 Sum_probs=183.6
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe-eCccCcEEEEEecCCC--cEEEEeeCCCcEEEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDANA--LFSASGSADFTAKLW 88 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~-~~h~~~V~~~~~~~~~--~~l~s~s~D~~v~iw 88 (268)
|.+|.+.|+.+.|+. .|..|++||.|..+.+||...++....| .||...|....|.|.. +-+++++.||.+++=
T Consensus 138 L~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred ccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 568999999999985 7899999999999999999998766555 5899999888888754 457999999999997
Q ss_pred eCCC-CCe---eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcc---cEEEEEEeCCCC
Q 024372 89 DALT-GDE---KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG---SIRTVAWLHSDQ 158 (268)
Q Consensus 89 ~~~~-~~~---~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~---~v~~~~~~~~~~ 158 (268)
.+.. +.+ .+...|..+|..++..| ..+.|.+++.|+.++-+|++...... .....+.. ....++..|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 6543 322 34456889999999988 45788999999999999987643221 11112222 457788888888
Q ss_pred cEEEEeeCCCeEEEEeCCCCce------EEeecC-------CCCEEEEEECCCC-cEEEEeCCCeEEEEeCCC--c----
Q 024372 159 TILSSCTDSGGVRLWDARSGKI------VQTLET-------KSPVTSAEVSRDG-RYITTADGSSVKFWDANH--F---- 218 (268)
Q Consensus 159 ~~~~~~~~d~~i~iwd~~~~~~------~~~~~~-------~~~v~~~~~s~~g-~~l~~~~~~~v~~wd~~~--~---- 218 (268)
+.+++++.|..+++||.|.-.. +.++.. ...|.++.++.++ .++++=.|..|.++.... +
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 8888888889999999975321 233321 2458999999766 455555778899995421 1
Q ss_pred ------eeeeE-EeCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 219 ------GLVKG-YNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 219 ------~~~~~-~~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
..++. |..+.+ +..+-|+.+-..++++||.=|-|.+|+=++++.|..
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 11222 444333 344566655678889999989999999888887654
No 197
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.6e-13 Score=120.02 Aligned_cols=218 Identities=17% Similarity=0.121 Sum_probs=137.6
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 118 (268)
.+.++|. +|+....+..+...+.+.+|+||++.++..+.+ ..|++||+.++........+..+....|+||++.++
T Consensus 177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 4555565 455555566677889999999999988876643 459999998887654433444566789999998776
Q ss_pred -EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe--CCCCceEEeecCCCCEEEEEE
Q 024372 119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSAEV 195 (268)
Q Consensus 119 -s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd--~~~~~~~~~~~~~~~v~~~~~ 195 (268)
+.+.++...+|.++........+..+.+......|+|++..++.++..++...||. +.+++...............|
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 56777777777543222223344334444566789999888776655446666664 455544332222222346789
Q ss_pred CCCCcEEEE-eCC---CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC---eEEEEECCCCcEE
Q 024372 196 SRDGRYITT-ADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQI 263 (268)
Q Consensus 196 s~~g~~l~~-~~~---~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~i~~wd~~~g~~~ 263 (268)
+|||++++. +.+ ..|.+||+...+.. ............++| +|++++.++.++ .+++.++. |+..
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~-g~~~ 407 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSD-GRIK 407 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECC-CCCEEEEEEecCCCEEEEEEECC-CCce
Confidence 999998864 322 26999999776433 222222334567777 588777665432 46676763 5433
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=3e-13 Score=109.81 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=159.7
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEE--EecCCCcEEEEeeCC--CcEEEEeCCC
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSAD--FTAKLWDALT 92 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~--~~~~~~~~l~s~s~D--~~v~iw~~~~ 92 (268)
..+....|+. |...|..|+.||. +++..+..+. .+..-.+.+.-| -|+ ..++|-.+.+ ..+++.+...
T Consensus 6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeecc---ceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc
Confidence 3556666774 7778999999997 6666555432 122223333333 354 3444444444 4589999988
Q ss_pred CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccEEEEEEeCCCCcEEE-EeeCCCe
Q 024372 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQTILS-SCTDSGG 169 (268)
Q Consensus 93 ~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-~~~~d~~ 169 (268)
...+..+..+.+|.+|.++.+ .|+.+-. ..|.+||+.+.+........ +...+..++.++.+.++.. ++.+.|.
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred CceEEEEecCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 888888888889999999865 4555444 45999999876654333222 2223444444443333322 2344589
Q ss_pred EEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeC-CC-eEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEE
Q 024372 170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIF 243 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~-~~-~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 243 (268)
|.|||+.+.+.+.++. |.+++.+++|+|+|.++++++ .| .||++.+..+..+..|.. +..+.+++|++ ++.+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L 233 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFL 233 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeE
Confidence 9999999999888887 557799999999999999865 34 479999999888877754 34566788887 68899
Q ss_pred EeccCCCeEEEEECCC
Q 024372 244 IAGGEDMWVHVFDFHT 259 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~ 259 (268)
++.|..++|++|.++.
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998753
No 199
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=4.1e-14 Score=113.89 Aligned_cols=246 Identities=18% Similarity=0.261 Sum_probs=170.1
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC---CC--eEEEeeCcc------------CcEEEEEecCCCc--
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD--WIGTFEGHK------------GAVWSCCLDANAL-- 74 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~---~~--~~~~~~~h~------------~~V~~~~~~~~~~-- 74 (268)
...+.|.++.|. .+|.+||+|..+|-+.++.-.. ++ ...++..|+ .+|..+.|-+++.
T Consensus 23 teadiis~vef~---~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 23 TEADIISAVEFD---HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred chhcceeeEEee---cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 345678899998 4899999999999999884322 22 445566664 4577888876653
Q ss_pred EEEEeeCCCcEEEEeCCCCCe-----------------------------------eeee--ccCCeEEEEEECCCCCEE
Q 024372 75 FSASGSADFTAKLWDALTGDE-----------------------------------KHSF--EHKHIVRACAFSEDTHLL 117 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-----------------------------------~~~~--~~~~~v~~v~~~~~~~~l 117 (268)
.++....|++|++|.+..... ++.+ .|.--|++++++.|...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 455566899999999854221 1111 144568899999999998
Q ss_pred EEeeCCCeEEEEECCCCCCCCeEe--cCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce----EEeec-
Q 024372 118 LTGGFEKILRIFDLNRPDAPPREV--GNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI----VQTLE- 185 (268)
Q Consensus 118 ~s~~~d~~i~~~d~~~~~~~~~~~--~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~- 185 (268)
+++ .|-.|.+|+++-........ ..+ ...|++..|.|...++++.++..|+|||-|+|.... .+.++
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 876 56789999986432221111 111 234677778888778887777789999999995321 11111
Q ss_pred ---C---------CCCEEEEEECCCCcEEEEeCCCeEEEEeC-CCceeeeEEeCCCCc----------------eeeEEc
Q 024372 186 ---T---------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNT----------------ESASLE 236 (268)
Q Consensus 186 ---~---------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~-~~~~~~~~~~~~~~~----------------~~~~~~ 236 (268)
. -..+..+.|+++|+|+++=+=-+|++||+ ...+++.+++.+... ..++++
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 0 13578899999999998766679999999 566788888765311 123444
Q ss_pred CCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
. ++..+.|||.....++|+...|....
T Consensus 339 g-~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 339 G-NDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred C-CcceEecccccceEEEecCCCCccee
Confidence 4 57799999999999999977666543
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=9e-14 Score=113.49 Aligned_cols=246 Identities=16% Similarity=0.173 Sum_probs=169.9
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe------eCccCcEEEEEecCCCcEEEEeeCCCcEEEE
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw 88 (268)
-...|..+.|. ..+.+..|...+.|..+.+......++...+ ..-+++|..++.. ...|.+|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 44567788886 3456677777778888888887777655443 3345666555443 3456788889999999
Q ss_pred eCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCC--CeEEEEECCCCCCCCeEecCC--------cccEEEEEE
Q 024372 89 DALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFE--KILRIFDLNRPDAPPREVGNS--------SGSIRTVAW 153 (268)
Q Consensus 89 ~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~--------~~~v~~~~~ 153 (268)
....+.. ...+.....+..+.-++ +..++++|+.. +.+++||++......+...-. .-+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 9885542 22333334455555555 45677779988 889999997542111111101 124567788
Q ss_pred eCCC-CcEEEEeeCCCeEEEEeCCCC-ceEEeec-CCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeE-EeCCC
Q 024372 154 LHSD-QTILSSCTDSGGVRLWDARSG-KIVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNMPC 228 (268)
Q Consensus 154 ~~~~-~~~~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~-~~~~~ 228 (268)
.+.. ...+++++.-+++|+||++.+ +++..+. ...++.++...|.|+++.+++ -+.+..||++....+.. +..-.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 7652 345778888899999999976 5677775 456799999999999998875 57899999998876543 44433
Q ss_pred C-ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 229 N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
+ +.++..+| ...+++++|.|+.+|++|+++.+++.
T Consensus 291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CCcceEEEcC-CCceEEeeccceeEEEeecccchhhh
Confidence 3 44555555 67899999999999999999866643
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.8e-15 Score=125.80 Aligned_cols=225 Identities=21% Similarity=0.259 Sum_probs=173.6
Q ss_pred eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec
Q 024372 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (268)
.+.|. .+|.+|+.|+.-|.+-.+|..++++...+.- ...|+.+.|-.+.+++|. ..-..++|||- .+...+.+.
T Consensus 134 ~~~yt---rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 134 HLDYT---RNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV-AQKKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred eeeec---CCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh-hhhceEEEecC-CCcEEeehh
Confidence 56775 5899999999999999999999999888763 457888888877777764 46678999985 455566666
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (268)
Q Consensus 101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 180 (268)
-...|..+.|-|..-+|++++..|.++.-|+..++.. ..+....+.+..+.-+|-+..+- .|...|+|.+|...+.++
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV-a~~~t~~G~~~vm~qNP~NaVih-~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV-ASIRTGAGRTDVMKQNPYNAVIH-LGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhh-HHHHccCCccchhhcCCccceEE-EcCCCceEEecCCCCcch
Confidence 5667888999999999999999999999999877543 33334456677777777665444 445569999999998887
Q ss_pred EE-eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 181 VQ-TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 181 ~~-~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
+. .+.+.++|.++++.|+|+|+++ |-|+.|+|||++.+..+.++..+.....++++ .+.+++.|....|.+|.
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S---qkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS---QKGLLALSYGDHVQIWK 360 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc---cccceeeecCCeeeeeh
Confidence 65 4567789999999999999886 56999999999998877777766555555554 33455566666699995
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.4e-14 Score=122.64 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=131.0
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~ 91 (268)
...|.+.|.+-.|+| ||.-|++++.||.|++|. ++|-+..++-....+|++++|.|++.-++-+..+ .+.+=.+.
T Consensus 100 v~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~ 174 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLA 174 (737)
T ss_pred hhhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecc
Confidence 357999999999985 999999999999999997 4565666666678899999999998766555443 34443443
Q ss_pred CCCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 92 ~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+.....+ .|...|.++.|++...++++|+.|-..++||.- +.. ......|..+|++++|+|+ .+++.++. +++
T Consensus 175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~-Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~ 249 (737)
T KOG1524|consen 175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN-LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTA 249 (737)
T ss_pred cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc-cccCChhccceeeeeeccc--cceeeeee-eee
Confidence 33333333 488899999999999999999999999999964 222 2222346779999999997 45556665 777
Q ss_pred EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 206 (268)
|+=..+ .+.+..++|||||..++++.
T Consensus 250 R~~~p~----------~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 250 RFSSPR----------VGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eecCCC----------ccceEEEEEcCCCceeeccc
Confidence 732111 35588999999999998764
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2e-13 Score=119.70 Aligned_cols=204 Identities=14% Similarity=0.074 Sum_probs=135.1
Q ss_pred eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCC---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC
Q 024372 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD 82 (268)
Q Consensus 7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D 82 (268)
..+..+..|.+++.+.+|+| ||+.|+..+.+ ..+.+|++.+++.. .+..+.+.....+|+|+++.++ +.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCC
Confidence 34555667778888899985 99999988744 35888999888754 3334445556789999998764 55555
Q ss_pred C--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 83 F--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 83 ~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
+ .|++||+.++.......+.......+|+||++.++.++. ++. |.++|+..+. .+.+..........+|+|++
T Consensus 270 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCC
Confidence 5 599999988776544444444567889999998877653 444 5555665433 22222222334467899988
Q ss_pred CcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCC
Q 024372 158 QTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANH 217 (268)
Q Consensus 158 ~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~ 217 (268)
..++.+..+++ .|.+||+.+++.. .+..........|+|||++++. +. ...+.++|+..
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 87766544433 6999999888755 3332223456789999998754 32 23577788754
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.2e-13 Score=117.77 Aligned_cols=204 Identities=15% Similarity=0.091 Sum_probs=139.7
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeC---CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF 83 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~---d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~ 83 (268)
.+..+..|.+++...+|+| ||+.|+..+. +..+.+||+.+++.. .+..+.+.+...+|+||++.++ +.+.++
T Consensus 193 ~~~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred CcEEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 4455667888999999985 9999988764 457889999888753 4556677788889999998764 566666
Q ss_pred c--EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-C--CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372 84 T--AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-E--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 84 ~--v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d--~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (268)
. |++||+.++.......+........|+||++.++..+. + ..|.++|+..+. .+.+....+.+....|+|++.
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGD 346 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCC
Confidence 5 77778887776554445555667899999998887663 3 357777876433 233323344566678999988
Q ss_pred cEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC-C-----CeEEEEeCCCc
Q 024372 159 TILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G-----SSVKFWDANHF 218 (268)
Q Consensus 159 ~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~-----~~v~~wd~~~~ 218 (268)
.++.+..+. ..|.+||+..+.. ..+.....+....|+|||++++. +. . ..+.+.|+...
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 776654333 3688899865543 33433334667899999998754 32 1 25677777543
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=3.1e-12 Score=109.20 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=157.5
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEE
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLW 88 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw 88 (268)
..+.....+-..+.|+ |||+++..+++|+.+.++|+.+++.+++++.-.+ -..+++++||++++.+. .++.+.++
T Consensus 30 ~~i~~~~~~h~~~~~s---~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFS---PDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEE-STTEEEEEE-T---T-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEcCCCCceeEEEec---CCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEe
Confidence 3343333333346676 5999999999999999999999999999975443 56799999999887655 78999999
Q ss_pred eCCCCCeeeeeccC--------CeEEEEEECCCCCEEEEeeCC-CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 89 DALTGDEKHSFEHK--------HIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 89 ~~~~~~~~~~~~~~--------~~v~~v~~~~~~~~l~s~~~d-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
|.++.+.+..++.. ..+..+..+|....++..-.| +.|-+.|......................|.|++.+
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 99999988877522 245667678877755555544 777777866543222222122233456778888888
Q ss_pred EEEEeeCCCeEEEEeCCCCceEEeecCC----------------------------------------------------
Q 024372 160 ILSSCTDSGGVRLWDARSGKIVQTLETK---------------------------------------------------- 187 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------------------- 187 (268)
++++...++.|-++|+++++.+..+...
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 7777777788999998877655432110
Q ss_pred ---CCEEEEEECCCCcEEEEe----C-CCeEEEEeCCCceeeeEEeCCCC--ceeeEEcCCCCCEEEecc--CCCeEEEE
Q 024372 188 ---SPVTSAEVSRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGG--EDMWVHVF 255 (268)
Q Consensus 188 ---~~v~~~~~s~~g~~l~~~----~-~~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gs--~d~~i~~w 255 (268)
+...-+..+|+++++... . .+.|.++|.++.+.++++..... ..-..+.+ +|+.+..+. .++.|.+|
T Consensus 266 ~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEE
T ss_pred ECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEE
Confidence 011344558999887654 2 37899999999877776653323 44455666 577655443 34479999
Q ss_pred ECCCCcEEeec
Q 024372 256 DFHTGEQIAIT 266 (268)
Q Consensus 256 d~~~g~~~~~~ 266 (268)
|.+|.+++++.
T Consensus 345 D~~Tl~~~~~i 355 (369)
T PF02239_consen 345 DAKTLKEKKRI 355 (369)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCcEEEEEE
Confidence 99999998764
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.7e-13 Score=118.02 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=141.5
Q ss_pred CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE
Q 024372 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL 117 (268)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 117 (268)
.+|.+||.. +.....+..|...+...+|+||++.++..+. +..|++||+.++................|+|+++.+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 357788875 4444556667788999999999999887763 346999999887764443344445578899999876
Q ss_pred E-EeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEE
Q 024372 118 L-TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTS 192 (268)
Q Consensus 118 ~-s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~ 192 (268)
+ +.+.++ .|.+||+.++. ......+.+.....+|+|++..++.++..++. |.++|+.+++.............
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~ 340 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR 340 (433)
T ss_pred EEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 5 445444 58889987653 23333333344567899988877666544444 77778877765433222223446
Q ss_pred EEECCCCcEEEEe--CC--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---CCeEEEEECCCCc
Q 024372 193 AEVSRDGRYITTA--DG--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHTGE 261 (268)
Q Consensus 193 ~~~s~~g~~l~~~--~~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~ 261 (268)
..|+|+|++++.. ++ ..|.+||+...... .+..........+++ +|++++..+. ...|++++...+.
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc
Confidence 8999999987643 22 36899999776543 222222234556776 6887776554 3468899885443
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.5e-13 Score=116.61 Aligned_cols=202 Identities=11% Similarity=0.118 Sum_probs=131.7
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeC---CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEe-eCCC-
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADF- 83 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~---d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-s~D~- 83 (268)
+..+..+.+++...+|+| ||+.|+..+. +..+.+|++.+|+... +....+.+...+|+||++.|+.. +.++
T Consensus 191 ~~~lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 344455677888999985 9999987653 3467888998886432 22223334567899999987643 4454
Q ss_pred -cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-CeEEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-KILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 84 -~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
.|++||+.++.......+...+....|+|+++.|+..+.+ +...+| |+..+. ...............|+|++..
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCE
Confidence 5888999887765555455567788999999988766643 444555 554432 2333233334556788998887
Q ss_pred EEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCC---eEEEEeCCC
Q 024372 160 ILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGS---SVKFWDANH 217 (268)
Q Consensus 160 ~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~---~v~~wd~~~ 217 (268)
++.++..+ ..|.+||+.+++... +..........|+|||++++.+ .++ .+.++++..
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 76665443 358889998887543 3222223467899999987653 332 367788743
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.3e-13 Score=112.55 Aligned_cols=216 Identities=15% Similarity=0.196 Sum_probs=157.7
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----eEEEeeCccCcEEEEEecCCC-cEEEEeeCC--CcE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----WIGTFEGHKGAVWSCCLDANA-LFSASGSAD--FTA 85 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D--~~v 85 (268)
+.-+++|.+++.. || .|++|-.+|.+++|..+.+. .+..+..+ .++..+.-.+.. .++|+||.. ..+
T Consensus 102 ~l~~~~I~gl~~~----dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA----DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccchhhc----CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 4456778788775 55 67788999999999887543 22234434 445555545444 566789988 899
Q ss_pred EEEeCCCCCeeeeec----------cCCeEEEEEECCC--CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEE
Q 024372 86 KLWDALTGDEKHSFE----------HKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~----------~~~~v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 153 (268)
++||+++.+.+..-. .+-.++.+.|-+. ...|++++.-+++|+||...++.+...+.-...+++++..
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 999998874433321 1112457788776 7899999999999999998877777777666778999998
Q ss_pred eCCCCcEEEEeeCCCeEEEEeCCCCceEEe-ecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCc
Q 024372 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQT-LET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT 230 (268)
Q Consensus 154 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~ 230 (268)
.|.+. ++.++...+.+..+|+|++..... ++. .+.+.++..+|.+.++++. =|+.|||+|+++.+++.....++..
T Consensus 256 ~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~l 334 (412)
T KOG3881|consen 256 TPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRL 334 (412)
T ss_pred cCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccc
Confidence 87664 566667779999999999988765 553 4669999999999999865 5999999999987766554444444
Q ss_pred eeeEE
Q 024372 231 ESASL 235 (268)
Q Consensus 231 ~~~~~ 235 (268)
..+.+
T Consensus 335 t~il~ 339 (412)
T KOG3881|consen 335 TFILL 339 (412)
T ss_pred cEEEe
Confidence 44444
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.5e-14 Score=116.80 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=130.9
Q ss_pred EEEEecCCCcEEEEeeCCCcEEEEeCCCCCe-eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC
Q 024372 65 WSCCLDANALFSASGSADFTAKLWDALTGDE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (268)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~ 143 (268)
..++|+.++..+++|+.||++|+|+...... .....|...|.++.|+||+++|++-+.| ..++|+.+++.........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 5688999999999999999999999655544 3344688899999999999999999999 8899999876332222111
Q ss_pred Ccc-cEEEEEEeCCC---CcE-EEEeeCCCeEEEEeCCC--C-ceE---EeecCCCCEEEEEECCCCcEEEEe-CCCeEE
Q 024372 144 SSG-SIRTVAWLHSD---QTI-LSSCTDSGGVRLWDARS--G-KIV---QTLETKSPVTSAEVSRDGRYITTA-DGSSVK 211 (268)
Q Consensus 144 ~~~-~v~~~~~~~~~---~~~-~~~~~~d~~i~iwd~~~--~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~ 211 (268)
... ....+.|..++ ..+ ++.-...+.|+.||+.. + ..+ +.+.....+.+++++++|+|++.+ -++.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 111 22334444332 222 33333335677766532 1 111 222334579999999999999865 489999
Q ss_pred EEeCCCceeeeEEeC-CC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 212 FWDANHFGLVKGYNM-PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 212 ~wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+++....++++-... +. -+..+.|+| +.+++++-|.|..+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 999987766654443 22 245677777 57777877777777777654
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.9e-13 Score=101.74 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=150.9
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-------e-EEEeeCcc-----CcEEEEEecCCCcEEEE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------W-IGTFEGHK-----GAVWSCCLDANALFSAS 78 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-------~-~~~~~~h~-----~~V~~~~~~~~~~~l~s 78 (268)
..+|.+||+.++|. |. +|++| .||.|+=|.-...+ + ......|. ..|.++...|...-+..
T Consensus 58 eqahdgpiy~~~f~----d~-~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH----DD-FLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred ccccCCCeeeeeee----hh-heeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 36899999999997 43 45444 45999887543321 1 11122343 34778888887766667
Q ss_pred eeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEE-CCCCCEEEEeeCCCeEEEEECCCCCCCCeEec----------CCcc
Q 024372 79 GSADFTAKLWDALTGDEKHSFE-HKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDAPPREVG----------NSSG 146 (268)
Q Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~-~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~----------~~~~ 146 (268)
++.|+.++-||++++...+.+. |.+.|.++.- +.+++ +++|+.||++|+||..+.+.. +.+. +-..
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecccccee-EEeccccChhhcCcccCc
Confidence 7789999999999999999885 9999999987 44554 679999999999999865432 1111 1123
Q ss_pred cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeE-Ee
Q 024372 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG-YN 225 (268)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~-~~ 225 (268)
+|-+++-+ ..+++ . +....+.+|.+|+.++..+++...++..+.|-.+- .++.+.++.|.-|.+.. .++. .+
T Consensus 210 wigala~~--edWlv-C-GgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~-vl~~G~g~~v~~~~l~G--vl~a~ip 282 (325)
T KOG0649|consen 210 WIGALAVN--EDWLV-C-GGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDC-VLIGGEGNHVQSYTLNG--VLQANIP 282 (325)
T ss_pred eeEEEecc--CceEE-e-cCCCceeEEeccCCCceEEEecccceeEeeeecce-EEEeccccceeeeeecc--EEEEecc
Confidence 45566543 34544 3 33368999999999999999988889888887663 55566677888887642 2221 12
Q ss_pred C-CCCceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372 226 M-PCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 226 ~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~w 255 (268)
. .....+..+....-+++.+++....+.++
T Consensus 283 ~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 283 VESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCccceeeecccCCceEEEEecccceeeeee
Confidence 2 11223333332223445556665556655
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=2.5e-13 Score=105.86 Aligned_cols=153 Identities=20% Similarity=0.365 Sum_probs=107.4
Q ss_pred EEECCCCCEEEEeeC----------CCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEE-eeCCCeEEEEeC
Q 024372 108 CAFSEDTHLLLTGGF----------EKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDA 175 (268)
Q Consensus 108 v~~~~~~~~l~s~~~----------d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~iwd~ 175 (268)
+.|+++|..|+.-.. -+...+|-++......... ....++|..++|+|++..+++. |..++.|.|||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 557777765543222 1234555553333333333 2345679999999998876443 445579999999
Q ss_pred CCCceEEeecCCCCEEEEEECCCCcEEEEeC----CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---
Q 024372 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE--- 248 (268)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~--- 248 (268)
+ ++.+..+. ...++.+.|+|+|++++.++ .+.|.+||+++.+.+..+... ....+.++| +|++|++++.
T Consensus 91 ~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsP-dGr~~~ta~t~~r 166 (194)
T PF08662_consen 91 K-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSP-DGRYLATATTSPR 166 (194)
T ss_pred c-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcC-CCCEEEEEEeccc
Confidence 7 66677665 35688999999999987642 467999999988888777654 356777887 6999998764
Q ss_pred ---CCeEEEEECCCCcEEee
Q 024372 249 ---DMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 249 ---d~~i~~wd~~~g~~~~~ 265 (268)
|..+++|++ +|+++..
T Consensus 167 ~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 167 LRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred eeccccEEEEEe-cCeEeEe
Confidence 788999998 5887764
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=4.8e-14 Score=119.36 Aligned_cols=207 Identities=14% Similarity=0.169 Sum_probs=145.4
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~ 110 (268)
...++.++.||.+.+-+ ..|+.-+....|.+.|.+-.|+|+|.-|+|++.||.|++|.-...-.........+|+|++|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence 34688899999988765 45666677889999999999999999999999999999998643222222346678999999
Q ss_pred CCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCCCC
Q 024372 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSP 189 (268)
Q Consensus 111 ~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~ 189 (268)
.|+++.++-+- .+.+.+-.+.. ....-....|.|-|.++.|++.. .++++|++|-..+|||.. |+.+.+- .+..+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEec-CCeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeeccc-CcccccCChhccc
Confidence 99776544433 23444444432 22334556789999999999866 467778888999999987 4444433 45678
Q ss_pred EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV 254 (268)
Q Consensus 190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~ 254 (268)
+.+++|.|+..|++.+. .++|+=..+.+ .+..+++++ +|..++.|...|.+.+
T Consensus 230 ITSva~npd~~~~v~S~-nt~R~~~p~~G----------SifnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPEKDYLLWSY-NTARFSSPRVG----------SIFNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccccceeeeee-eeeeecCCCcc----------ceEEEEEcC-CCceeeccccCceEEE
Confidence 99999999955554443 35552221111 234566776 6888888887776544
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.3e-12 Score=112.79 Aligned_cols=212 Identities=16% Similarity=0.129 Sum_probs=137.9
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee---CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 118 (268)
.+.++|..... .+.+..+...+...+|+|||+.++..+ .+..+++|++.+++.......+..+....|+||++.|+
T Consensus 180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 56777765443 334445667899999999999887654 34579999998876544433444455688999999887
Q ss_pred Ee-eCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEEE
Q 024372 119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA 193 (268)
Q Consensus 119 s~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~ 193 (268)
.. +.++ .|.+||+.++. ..........+....|+|++..++.++..++. |.++|+.+++..............
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred EEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 54 3344 58888987543 23333333456778999998877666554444 444577776554332223345578
Q ss_pred EECCCCcEEEE-eC-C--CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC---eEEEEECC
Q 024372 194 EVSRDGRYITT-AD-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFH 258 (268)
Q Consensus 194 ~~s~~g~~l~~-~~-~--~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~---~i~~wd~~ 258 (268)
.|+|||++++. +. + ..|.+||+...... .+..........++| +|++++.++.++ .++++++.
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECC
Confidence 89999998764 32 2 46888998776432 232222233556776 699888877665 37888874
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=4.5e-14 Score=109.90 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=169.0
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
.+++++|.+.|+++.|-+ + .+|.+|+.-|-+++|...+.+-...++ .|...|..+..-|+ ..+.+-++|..+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa---~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA---N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eeEeccccchheehhhcc---c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 356789999999999974 2 369999999999999999988877888 46778888888886 45688999999999
Q ss_pred EeCCCCC--------------eeeee-------------c-------c--------------------CCeEEEEEECC-
Q 024372 88 WDALTGD--------------EKHSF-------------E-------H--------------------KHIVRACAFSE- 112 (268)
Q Consensus 88 w~~~~~~--------------~~~~~-------------~-------~--------------------~~~v~~v~~~~- 112 (268)
|++.... +...+ . | ...+.+..+..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9985411 00000 0 0 01133333211
Q ss_pred CC-C-EEEEeeCCCeEEEEECCCCCCCC---------eEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc
Q 024372 113 DT-H-LLLTGGFEKILRIFDLNRPDAPP---------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGK 179 (268)
Q Consensus 113 ~~-~-~l~s~~~d~~i~~~d~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~ 179 (268)
.+ . ++++|-.+|.+-+||+.++.... .....|.+++.++.|.+.-..=+..|- +..+..|.+. ++.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga-~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA-DDKLVMYSLNHSTGS 240 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc-cccceeeeeccccCc
Confidence 22 2 45567788999999998752211 112346778899888653322233333 3567788774 343
Q ss_pred eE--Eeec-CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEE
Q 024372 180 IV--QTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHV 254 (268)
Q Consensus 180 ~~--~~~~-~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~ 254 (268)
+. .++. .+..+..+.+-||++.+++ +-|+.||+|..++..++....++. .+.+++|+| +..++++||.|..|.+
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISL 319 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEe
Confidence 32 1222 2456889999999999987 469999999999988887776654 466777777 5789999999999999
Q ss_pred EEC
Q 024372 255 FDF 257 (268)
Q Consensus 255 wd~ 257 (268)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 986
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=9.6e-12 Score=99.37 Aligned_cols=171 Identities=14% Similarity=0.262 Sum_probs=124.4
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-CeeeeeccCC-eEEEEEECC--CCCEE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKH-IVRACAFSE--DTHLL 117 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~-~v~~v~~~~--~~~~l 117 (268)
++.|||-...+++.++. -..+|.++.+.++.-.+ -..+.|++|...++ +..+.++... |=.-++..| +..+|
T Consensus 76 kviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv---vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV---VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred eEEEEecccCcEEEEEE-eccceeeEEEcCCeEEE---EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 67899988888888886 56789999998764322 24779999998744 3444443211 212333444 33444
Q ss_pred EE-eeCCCeEEEEECCCCCC-CCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe-EEEEeCCCCceEEeecC---CCCEE
Q 024372 118 LT-GGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPVT 191 (268)
Q Consensus 118 ~s-~~~d~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~---~~~v~ 191 (268)
|. |..-|.+++-|+..... ....+..|...|.|++.+.+| .++++++..|+ |||||.++|+.++.+.. +..+.
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 44 44568999999875443 346777899999999988765 56777777674 89999999999998863 46699
Q ss_pred EEEECCCCcEEEEe-CCCeEEEEeCCC
Q 024372 192 SAEVSRDGRYITTA-DGSSVKFWDANH 217 (268)
Q Consensus 192 ~~~~s~~g~~l~~~-~~~~v~~wd~~~ 217 (268)
+++|||+..+|+.+ +.+++.+|.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999865 558999998865
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.9e-12 Score=113.34 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=128.7
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCCc
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT 84 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~~ 84 (268)
+..+..+.+.+.+.+|+| ||+.|+..+.+. .+.+||+.+++... +....+.+...+|+||+..++ +.+.++.
T Consensus 188 ~~~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCC
Confidence 344556788899999985 999998877543 47889999887543 333445566789999998775 5677888
Q ss_pred EEEEe--CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372 85 AKLWD--ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 85 v~iw~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
..||. ...+.......+........|+|||+.++..+. ++...+|.++......+.............|+|++..++
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 77765 444443322233334556789999998876554 456666654322112222222222344568899888776
Q ss_pred EEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-CC--eEEEEeC
Q 024372 162 SSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-GS--SVKFWDA 215 (268)
Q Consensus 162 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~~--~v~~wd~ 215 (268)
.++...+ .|.+||+.+++...... ........|+|||++++.+ . ++ .+.+.++
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 6554433 69999999887544332 2334678999999987643 2 22 3455555
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.58 E-value=4.8e-13 Score=117.93 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=154.0
Q ss_pred CCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCCe-------eeeeccCCeEEEEEEC
Q 024372 41 SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDE-------KHSFEHKHIVRACAFS 111 (268)
Q Consensus 41 ~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~-------~~~~~~~~~v~~v~~~ 111 (268)
+.+.+|+.... +.-..+. -...|.++.|+|.. .++|.|..+|+|-+||+..+.. ...-.|..++..+.|-
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 46788988765 3333343 35689999999865 5678888999999999976554 1223478888888885
Q ss_pred CCC--CEEEEeeCCCeEEEEECCCCCCCCe-----E------ecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE---EeC
Q 024372 112 EDT--HLLLTGGFEKILRIFDLNRPDAPPR-----E------VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDA 175 (268)
Q Consensus 112 ~~~--~~l~s~~~d~~i~~~d~~~~~~~~~-----~------~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i---wd~ 175 (268)
.+. .-+++++.||.|..|+++.-..+.. . .......++++.|.+.+...++.|+++|.|.- ++.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 533 4589999999999998753211110 0 01122357889998888888999999998876 344
Q ss_pred CCCce-----EEee-cCCCCEEEEEECCCCc-EEEEeCCCeEEEEeCC-CceeeeEEeCCCC-ceeeEEcCCCCCEEEec
Q 024372 176 RSGKI-----VQTL-ETKSPVTSAEVSRDGR-YITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIAG 246 (268)
Q Consensus 176 ~~~~~-----~~~~-~~~~~v~~~~~s~~g~-~l~~~~~~~v~~wd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 246 (268)
+.+.. +..+ .+.+++.++.++|=+. ++.++.|-+|+||... ...++-.+..+.. ...++|+|--...|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 43331 1122 2457899999999764 4455568899999987 5555555544444 56788888667799999
Q ss_pred cCCCeEEEEECCCCc
Q 024372 247 GEDMWVHVFDFHTGE 261 (268)
Q Consensus 247 s~d~~i~~wd~~~g~ 261 (268)
..||.|.+||+....
T Consensus 461 d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDD 475 (555)
T ss_pred cCCCceehhhhhccc
Confidence 999999999986443
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.1e-12 Score=106.44 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=119.0
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC---ccCcEEEEEecCCCcEEEEee--CCCcEEEEeC
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGS--ADFTAKLWDA 90 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~s--~D~~v~iw~~ 90 (268)
..+|.++.++ .+.|+..-.+. |.|||+++.++++++.. |...+.++++++.+.++|--+ .-|.|.+||.
T Consensus 87 pt~IL~VrmN-----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 87 PTSILAVRMN-----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred CCceEEEEEc-----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 4467777774 56777676666 99999999999988864 445576666677777887533 3589999999
Q ss_pred CCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCe-EEEEECCCCCCCCeEec-CCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKI-LRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 91 ~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~-i~~~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
.+-+....+. |+.++-+++|+++|.+|||++..|+ ||+|.+.+++...+.-. ..-..|.+++|+++.+.+.+++ ..
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~T 239 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NT 239 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CC
Confidence 9988888775 9999999999999999999998887 78999987654433221 1233578899999887655554 55
Q ss_pred CeEEEEeCCCCc
Q 024372 168 GGVRLWDARSGK 179 (268)
Q Consensus 168 ~~i~iwd~~~~~ 179 (268)
++|.||-+++..
T Consensus 240 eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 240 ETVHIFKLEKVS 251 (391)
T ss_pred CeEEEEEecccc
Confidence 899999887544
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=3.1e-15 Score=132.16 Aligned_cols=208 Identities=20% Similarity=0.298 Sum_probs=149.3
Q ss_pred CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEE
Q 024372 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (268)
Q Consensus 52 ~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d 130 (268)
+.+..|.||.+.|+++.|...|.++.+|+.|..+|||..++..+..... |...++.++.+.+..++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4566778999999999999999999999999999999999988887774 888899999999999999999999999999
Q ss_pred CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee------cCCC----------------
Q 024372 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL------ETKS---------------- 188 (268)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------~~~~---------------- 188 (268)
+.++. +...+.+|.|.|++++|+|-. ++++||++++||.|- ..+... ....
T Consensus 261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccccccc
Confidence 98764 445566789999999998843 567889999999981 111110 0001
Q ss_pred ----------CEEEEEECCCCcEEEE-----------e-CCCeEEEEeCCCceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372 189 ----------PVTSAEVSRDGRYITT-----------A-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA 245 (268)
Q Consensus 189 ----------~v~~~~~s~~g~~l~~-----------~-~~~~v~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (268)
.+..+++..++..++. + .+-.+.+|++-.+.++.....+.. ...+.++|-+.+.-.+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 1112222222222221 1 122456677766654444443333 3455666655566668
Q ss_pred ccCCCeEEEEECCCCcEEeec
Q 024372 246 GGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 246 gs~d~~i~~wd~~~g~~~~~~ 266 (268)
++.||...+||.-.|.++..+
T Consensus 414 ag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred ccCCCceEeeecccCCcceee
Confidence 999999999999888888765
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.8e-12 Score=101.25 Aligned_cols=244 Identities=16% Similarity=0.164 Sum_probs=161.3
Q ss_pred eecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-CC---Ce----------EEEeeCccCcEEEEEecCC
Q 024372 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TG---DW----------IGTFEGHKGAVWSCCLDAN 72 (268)
Q Consensus 7 ~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-~~---~~----------~~~~~~h~~~V~~~~~~~~ 72 (268)
.++++-+--...|.+++|.|.+ +.-|+.|.+.|-+ +|... +. +. +..-.|| .+|.+++|.+|
T Consensus 131 ~pt~Lks~sQrnvtclawRPls--aselavgCr~gIc-iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d 206 (445)
T KOG2139|consen 131 CPTKLKSVSQRNVTCLAWRPLS--ASELAVGCRAGIC-IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED 206 (445)
T ss_pred CCceecchhhcceeEEEeccCC--cceeeeeecceeE-EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC
Confidence 3344334566789999999964 4588889888765 56432 21 21 1222455 68999999999
Q ss_pred CcEEEEee-CCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372 73 ALFSASGS-ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (268)
Q Consensus 73 ~~~l~s~s-~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~ 150 (268)
+..+++++ .|..|+|||..++....... ....+.-+.|+||+.+|+++.-|+..++|+.+......+ .....+.+..
T Consensus 207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqt 285 (445)
T KOG2139|consen 207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQT 285 (445)
T ss_pred CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceee
Confidence 99999998 57889999999888766553 334577899999999999999999999997543222212 2223458888
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCC-Cc-----------eE---Eeec------C----CCCEEEEEECCCCcEEEEe
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARS-GK-----------IV---QTLE------T----KSPVTSAEVSRDGRYITTA 205 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~-----------~~---~~~~------~----~~~v~~~~~s~~g~~l~~~ 205 (268)
..|+|.|..++.+++. .-+++.+.- ++ .+ ..++ . .++..+++|.|.|.+++..
T Consensus 286 acWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred eeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 9999999988888764 445554321 11 00 0011 0 2468899999999999875
Q ss_pred CC---------CeEEEEeCCCceeeeE----EeCCCCceeeEE--cCCCCCEEEeccCCCeEEEEEC
Q 024372 206 DG---------SSVKFWDANHFGLVKG----YNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 206 ~~---------~~v~~wd~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
-. ..|.+||.++.-.+.. +...+.+..++| ..+.+.+|.+|=.-|.|.-|++
T Consensus 364 fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 364 FKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 32 2467788876433221 112223334444 4456778887766666777765
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=5.1e-11 Score=101.79 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=130.2
Q ss_pred cEE-EEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEE
Q 024372 32 FFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (268)
Q Consensus 32 ~~l-~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~ 110 (268)
+++ ++-..++++.+.|..+.+.+.++....+.-..+.++||+++++.+++|+.|.++|+.+.+.+.++........+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence 344 4556789999999999999999986555444567999999998889999999999999999999988888899999
Q ss_pred CCCCCEEEEee-CCCeEEEEECCCCCCCCeEecC-------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-
Q 024372 111 SEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGN-------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV- 181 (268)
Q Consensus 111 ~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~- 181 (268)
++||+++++++ ..+.+.++|.++-+.. +.+.. ....+..+..+|....++++--+-+.|.+-|....+.+
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v-~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPV-KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EE-EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccce-eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999998776 6899999998754322 22211 22345666667777656666555588888898766543
Q ss_pred -EeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCCCceee
Q 024372 182 -QTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLV 221 (268)
Q Consensus 182 -~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~~~~~~ 221 (268)
..+..........|+|+++++..+ .++.|-++|.++.+.+
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 345555567889999999987553 3457777777655443
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=1.7e-11 Score=107.05 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=138.1
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 118 (268)
.+.++|.. +.....+..+...+...+|+|++++++..+.+ ..|++||+.++.......+...+....|+|+++.|+
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 45666764 33344565677789999999999998876543 579999998886655444555666789999998776
Q ss_pred E-eeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEE
Q 024372 119 T-GGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (268)
Q Consensus 119 s-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (268)
. .+.++ .|.+||+.++. ......+.+......|++++..++.++...+ .|.++|+.+++..............
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 4 44443 58888886543 2233333333445688888877766554333 5888898877754433333446678
Q ss_pred EECCCCcEEEEe-CCC---eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC---CeEEEEECCCCcEEe
Q 024372 194 EVSRDGRYITTA-DGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIA 264 (268)
Q Consensus 194 ~~s~~g~~l~~~-~~~---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~g~~~~ 264 (268)
.|+|+|++++.. .+. .|.+||+..... +.+..........+.+ ++++|+..+.+ ..+++.+. +|+...
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence 999999987654 332 688899876432 2222222233446666 57777765543 24666664 354443
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=7.2e-13 Score=103.28 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=90.9
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEE--eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEE
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLW 88 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~--s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw 88 (268)
...++|.+++|+| +|+.+|.. ..+..+.+||++ ++.+.++. ...+..+.|+|+|++++.++.+ |.+.+|
T Consensus 57 ~~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 57 KKEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred cCCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 4556899999996 77776544 467799999996 77777774 5677889999999999988754 669999
Q ss_pred eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC------CCeEEEEECC
Q 024372 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN 132 (268)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~------d~~i~~~d~~ 132 (268)
|..+.+.+....|.. +..++|+|+|+.++++.. |+.+++|+..
T Consensus 131 d~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 131 DVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999888888877765 678999999999998764 6888999874
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=6.4e-12 Score=100.95 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=141.4
Q ss_pred eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (268)
Q Consensus 38 s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 116 (268)
..|+.|++|++...++...+..-.+++.+++|+|+|+. |.+..-|-.|.+|.+.+.......-.+..+..++|+|++++
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCce
Confidence 67779999999999999999888889999999999965 56777899999999988776554434455677788888877
Q ss_pred EEEeeCCCe------------------------------------EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcE
Q 024372 117 LLTGGFEKI------------------------------------LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (268)
Q Consensus 117 l~s~~~d~~------------------------------------i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (268)
.+-.+.... +-+||---+-.. ...+-.-.+..+.|+|.++ +
T Consensus 148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe~~lG~k~v~wsP~~q-f 224 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYERGLGLKFVEWSPCNQ-F 224 (447)
T ss_pred eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeeeeccceeEEEeccccc-e
Confidence 665543211 112221000000 0111112467789998776 5
Q ss_pred EEEeeCCCeEEEEeCCCCce------------------------------------------------------------
Q 024372 161 LSSCTDSGGVRLWDARSGKI------------------------------------------------------------ 180 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~~~------------------------------------------------------------ 180 (268)
++.|+.|+.+|+.+--+=+.
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 66677888888753221000
Q ss_pred EEeecC-------CCCEEEEEECCCCcEEEEeCC---CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372 181 VQTLET-------KSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 181 ~~~~~~-------~~~v~~~~~s~~g~~l~~~~~---~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~ 250 (268)
+++++. ...+..++|++|..|+++-.| ..+-+||+++.+.....-..+++....+.|...+ ++.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~pr-L~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPR-LVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCce-EEEEcCCc
Confidence 000000 013567899999999988765 4689999998765544444566778888885444 44444444
Q ss_pred eEEEEECC
Q 024372 251 WVHVFDFH 258 (268)
Q Consensus 251 ~i~~wd~~ 258 (268)
.+|+|-..
T Consensus 384 rLY~W~ps 391 (447)
T KOG4497|consen 384 RLYFWAPS 391 (447)
T ss_pred eEEEEcCC
Confidence 59999753
No 225
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.1e-13 Score=106.29 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=133.0
Q ss_pred cEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEec-CCc-ccE
Q 024372 74 LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSS-GSI 148 (268)
Q Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-~~~-~~v 148 (268)
..+|.+-..|.|+++|..+++.+..+. ++..++.+.|.. .+..+.+|+.||+||+||++......+... .+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 456777789999999999988888775 555666676644 566889999999999999987654444332 222 356
Q ss_pred EEEEEeCCCCcEEEEeeC----CCeEEEEeCCCCce-EEeec--CCCCEEEEEECCCC-cEEEE-eCCCeEEEEeCCCc-
Q 024372 149 RTVAWLHSDQTILSSCTD----SGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHF- 218 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~----d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~g-~~l~~-~~~~~v~~wd~~~~- 218 (268)
.+++.... ..+++.|+. +-.|.+||+|..+. +..+. |+..|.++.|+|.. ++|++ +.||.|.+||++..
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66665433 345555432 34799999999877 66553 55679999999975 45554 56999999998653
Q ss_pred ---eeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 219 ---GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
.++..++....+-.+.|..+--+.+.+-+..+..++|+.+.|.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 23455665555556677664334677888888899999877664
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.51 E-value=7.7e-13 Score=114.87 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=144.2
Q ss_pred cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (268)
.|..++|.|||..++-+. +..+.++|.+.+....++. |++.|.+++|+.||+.+++|+.|+.+.+|...-+ -...
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee
Confidence 789999999998765543 5589999999998888774 9999999999999999999999999999985322 2233
Q ss_pred cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220 (268)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~ 220 (268)
..|.+.|.|+.|+|-.. .+++|+- ...-+|..... .+........+++++|..||.+++.| .+|+|.+=+....+.
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 46788999999998664 4666665 56778987643 34445556789999999999999876 688988865432222
Q ss_pred eeEEe---CCCCceeeEEcCCCC----CEEEeccCCCeEEEEECCCCcEEe
Q 024372 221 VKGYN---MPCNTESASLEPKLG----NIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 221 ~~~~~---~~~~~~~~~~~~~~~----~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
++.-. -++++.+++++|..| +.++......++.+|.+ +|++|.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Ig 216 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIG 216 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeec
Confidence 22211 245677888887543 46777777788888876 477665
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=9.2e-13 Score=112.49 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=142.7
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (268)
-.+++++-.+- =|.+++....|.=.+++.|+++..|....+.++.|.+.+-..+++.|..||.|-+||..+......
T Consensus 136 GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 136 GRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred CccccccCCCc---cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 34666664332 244455555666679999999999998889999999999999999999999999999877665444
Q ss_pred ec-------cCC-----eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC-CcEEEEee
Q 024372 99 FE-------HKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCT 165 (268)
Q Consensus 99 ~~-------~~~-----~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 165 (268)
+. ++. .|+++.|+.+|-.++.|..+|.+.+||++..+........-.-+|..+.|.+.+ +..+++.
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~- 291 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM- 291 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-
Confidence 42 222 389999999999999999999999999997655444433445578888887653 3445554
Q ss_pred CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 206 (268)
+...++|||-.+|+.+..++....++.+++-|++-++..+.
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 44899999999999999998888899999999977766654
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=8e-12 Score=102.51 Aligned_cols=249 Identities=13% Similarity=0.134 Sum_probs=168.1
Q ss_pred ceeeecEEeee--cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEe
Q 024372 4 RKVAVPLVCHG--HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASG 79 (268)
Q Consensus 4 ~~~~~~~~~~~--h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~ 79 (268)
+|++||+-+.+ |...|.+|+|+- ....|.+|.++++++..|+++.+.+..+. ...+.|+.+..+|....+++.
T Consensus 91 ~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 91 RKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred hcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence 57788988854 667899999983 56789999999999999999998887664 234589999999998899999
Q ss_pred eCCCcEEEEeCCCCCe----eeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcc---cE
Q 024372 80 SADFTAKLWDALTGDE----KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSG---SI 148 (268)
Q Consensus 80 s~D~~v~iw~~~~~~~----~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~---~v 148 (268)
+.++.|-+||....+. ......+.....+.|+| ...+|++.+..+-+.+||.+.+....-..+ .... .-
T Consensus 168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence 9999999999976552 22223445567788999 567888888888899999876543221111 1111 11
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-EeecCC-------CCEEEEEECCCCcEEEEeCCCeEEEEeCCC---
Q 024372 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANH--- 217 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~-------~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~--- 217 (268)
..+.|+|.+..+++ .-....-.+||+-+.+|. .++.+. ..+.+++|..|...+.++++-.|.+|.+-.
T Consensus 248 M~~~~~~~G~Q~ms-iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMS-IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred hheeeCCCCCeehh-hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCcc
Confidence 35678887655443 333344567888776653 334332 246677888887755556677899998731
Q ss_pred -cee-------------------eeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 218 -FGL-------------------VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 218 -~~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
+.- +..+..+. -+..+.|.+ -..++++.|-...+++|.-
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheecccc
Confidence 210 00111111 122344554 4678888888899999964
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=5.5e-14 Score=117.05 Aligned_cols=190 Identities=15% Similarity=0.189 Sum_probs=146.5
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
.+.|.++.|-. +-+++| ...-.-+.|||- .|.-++.++.| ..|..+.|-|-..+|++++..|.++--|+.+++.
T Consensus 170 ~Etv~Dv~~LH---neq~~A-VAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl 243 (545)
T KOG1272|consen 170 METVRDVTFLH---NEQFFA-VAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL 243 (545)
T ss_pred hhhhhhhhhhc---chHHHH-hhhhceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh
Confidence 34566666642 223444 445566678874 46667777766 5788899999999999999999999999999998
Q ss_pred eeeecc-CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372 96 KHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (268)
Q Consensus 96 ~~~~~~-~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd 174 (268)
+..+.. ...+..++-+|-.-++-+|...|++.+|.....+.+ ..+..|.++|.++++.+.|.+++ +.+-|+.++|||
T Consensus 244 Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL-vKiLcH~g~V~siAv~~~G~YMa-TtG~Dr~~kIWD 321 (545)
T KOG1272|consen 244 VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL-VKILCHRGPVSSIAVDRGGRYMA-TTGLDRKVKIWD 321 (545)
T ss_pred hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH-HHHHhcCCCcceEEECCCCcEEe-ecccccceeEee
Confidence 887764 346777888998889999999999999998765543 44457889999999988776555 545669999999
Q ss_pred CCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd 214 (268)
+|....++++....+...+++|.-| +|+.+.+..|.+|.
T Consensus 322 lR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 322 LRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred eccccccceeecCCCcccccccccc-ceeeecCCeeeeeh
Confidence 9999988877665667788888777 56677777999995
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.8e-11 Score=104.82 Aligned_cols=238 Identities=14% Similarity=0.163 Sum_probs=159.6
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCC-CeEEeeCCCCCeE----------------------------EEeeCcc---
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWI----------------------------GTFEGHK--- 61 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~-~i~iw~~~~~~~~----------------------------~~~~~h~--- 61 (268)
+|+..-+.+..+ |||+||.+.+.-+ .|++||+..-.+. +++.-|.
T Consensus 49 e~p~ast~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 466666677776 5999876655444 7889987643211 0111110
Q ss_pred ----CcE----EEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 62 ----GAV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 62 ----~~V----~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
-.| +.++++.-+.=|..++....|+-.+++.|.-+..+... ..+++|..++-..+|++|+.+|.+-.||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 011 22223221222334444456777777777666666544 679999999988899999999999999987
Q ss_pred CCCCCCeE-----ecCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--CCCEEEEEECCC--
Q 024372 133 RPDAPPRE-----VGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD-- 198 (268)
Q Consensus 133 ~~~~~~~~-----~~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~-- 198 (268)
+....... ...+ ...|+++.|..+ +.-++.|+..|.+.|+|+|+.+++..-.+ ..++..+.|-+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 54321111 1112 224889998765 55577778889999999999988765544 456888999776
Q ss_pred CcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 199 GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 199 g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
+..+++.+...++|||-.+++.......-+....+|+.| ++-+|.+|-++..|..|=
T Consensus 285 q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p-~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVP-GSGMFFTANESSKMHTYY 341 (703)
T ss_pred CceEEecchHHhhhcccccCCceeeccccCCcCceeeec-CCceEEEecCCCcceeEE
Confidence 566778888899999998887776665555667788887 577888888887776653
No 231
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1e-12 Score=102.46 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=115.5
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC----------eEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD----------WIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
-.+.+.+..+...-..-.+|+.|-.+|.+.+||..++. -......|+.+|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 44455555532211233467888999999999999983 33444679999999999876555578888888
Q ss_pred EEEEeCCCC--Ce--eeeeccCC-eEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 85 AKLWDALTG--DE--KHSFEHKH-IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 85 v~iw~~~~~--~~--~~~~~~~~-~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
+.+|.+... .+ ......++ .|..+..-||++++||+++|+-||+|..++...+ ....-|.+.+++++|+|+. .
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd~-~ 306 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPDC-E 306 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCCC-c
Confidence 999987543 21 11112222 3667788999999999999999999998876543 3444567899999998874 4
Q ss_pred EEEEeeCCCeEEEEeC
Q 024372 160 ILSSCTDSGGVRLWDA 175 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~ 175 (268)
++++++.|.+|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 6777789999999986
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.9e-10 Score=99.86 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=134.3
Q ss_pred eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE-
Q 024372 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL- 118 (268)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~- 118 (268)
+.++|...++ ...+..+...+...+|+||++.++..+.+ ..|.+|++.++...........+....|+|+++.|+
T Consensus 181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 5556665443 44555677788999999999988776543 368889998877654433344455688999998776
Q ss_pred EeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEE
Q 024372 119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE 194 (268)
Q Consensus 119 s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~ 194 (268)
+...++ .|.++|+.++. ...+..+.+......|+|++..++.++..++ .|.++|+.+++..+............
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 444444 57788887543 2333333444556789998887766654333 57788888877543322222234568
Q ss_pred ECCCCcEEEEe-C-CC--eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC---CeEEEEECCC
Q 024372 195 VSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHT 259 (268)
Q Consensus 195 ~s~~g~~l~~~-~-~~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~ 259 (268)
|+|+|+.++.. . ++ .|.++|+...+.. ............++| +|++++..+.+ ..++++++..
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCC
Confidence 99999987643 2 22 5888998775432 222221223456777 68877765532 3578888753
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=9.4e-11 Score=102.45 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=130.8
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC-
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF- 83 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~- 83 (268)
+..+..+...+...+|+ |||++|+.++.++ .+.+|++.+++... +..+.+.+..++|+|+++.++ +.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~S---pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWS---PDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCC---CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCC
Confidence 44455667778888887 5999999887553 78899999886543 344556677789999998665 445444
Q ss_pred -cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCC-C--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc
Q 024372 84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 84 -~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (268)
.|++|++.++.......+........|+|+++.|+..+.. + .|.++|+..++ ...............|+|++..
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCE
Confidence 5888898877654444444444567899999988765543 3 56777776433 2233333445667788998877
Q ss_pred EEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-C--CeEEEEeCC
Q 024372 160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDAN 216 (268)
Q Consensus 160 ~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~wd~~ 216 (268)
++.+..+.+ .|.+||+.++.... +..........|+|+|++|+.. . + ..+.+.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 666654422 78999998865433 3222233456899999887643 2 2 245555543
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.43 E-value=5.9e-13 Score=112.82 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=85.0
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 94 (268)
-++.|+..+|+| ||++||+.|.||.+||++..+.+++..++.--+...+|+|+||++++++|+.|-.|.||.+....
T Consensus 289 ~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 289 GEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred ccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 455899999985 99999999999999999999999998888888999999999999999999999999999998877
Q ss_pred eeeee-ccCCeEEEEEEC
Q 024372 95 EKHSF-EHKHIVRACAFS 111 (268)
Q Consensus 95 ~~~~~-~~~~~v~~v~~~ 111 (268)
.+... .|+..|..|+|.
T Consensus 366 VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeccccccceeeEeec
Confidence 76654 488888888887
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.6e-10 Score=100.12 Aligned_cols=202 Identities=16% Similarity=0.099 Sum_probs=127.9
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCC---CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCC
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADF 83 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~---~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~ 83 (268)
.+..+..|.+++....|+| ||++|+..+.+. .+.+|++.+++... +....+.+...+|+|+++.++ +.+.++
T Consensus 190 ~~~~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred CceEEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 3445556778888899985 999998776542 46778998886543 333344555688999998776 455555
Q ss_pred --cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372 84 --TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 84 --~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (268)
.|++||+.++.......+........|+|+++.++..+. ++ .|.++|+.+++. ..............|+|++.
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~ 343 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVGNYNARPRLSADGK 343 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 578889988765543334444556789999987766553 33 466667655432 22211112233467889888
Q ss_pred cEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-C-C--CeEEEEeCC
Q 024372 159 TILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D-G--SSVKFWDAN 216 (268)
Q Consensus 159 ~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~wd~~ 216 (268)
.++.+...++ .|.+||+.+++....... .......|+|||++++.+ . + ..+.++++.
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7766654433 588899988765332222 222356899999987643 2 2 346667764
No 236
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.8e-12 Score=106.80 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=168.9
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-CC--eEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEE
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW 88 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~~--~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw 88 (268)
.||...|-...|.|.+.+ +.+++++.||.+++=.+.. +. -...+..|.++|..++..|+.. -|.|++.|+.++-.
T Consensus 182 SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred cccccchhhhhccCCCCC-cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence 489999999999998865 5799999999999864433 32 2345667999999999998874 47899999999999
Q ss_pred eCCCCCeeeeec----cCC---eEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC------CeEe-----cCCcccEE
Q 024372 89 DALTGDEKHSFE----HKH---IVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP------PREV-----GNSSGSIR 149 (268)
Q Consensus 89 ~~~~~~~~~~~~----~~~---~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~------~~~~-----~~~~~~v~ 149 (268)
|+.+......+. ++. ....++.+| +...+++|+.|...++||.+.-... .+.. ....-.|+
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 988766544332 222 356788888 4558999999999999997642211 0111 11123589
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEEeCCC--C----------ceEEe-ecCC---CCEEEEE-ECCCCcEEEEeCC-CeEE
Q 024372 150 TVAWLHSDQTILSSCTDSGGVRLWDARS--G----------KIVQT-LETK---SPVTSAE-VSRDGRYITTADG-SSVK 211 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~----------~~~~~-~~~~---~~v~~~~-~s~~g~~l~~~~~-~~v~ 211 (268)
+++|++++.-++++-.+ -.|.++.-.. | ..++. +++| ..|..+- |-|...|+++|+| |.|-
T Consensus 341 gl~Ysh~~sElLaSYnD-e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYND-EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eEEecCCccceeeeecc-cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence 99999888877776554 6788884432 2 12222 3433 2355555 4678889988766 9999
Q ss_pred EEeCCCceeeeEEeCCCCceeeEEc-CCCCCEEEeccCCCeEEEEECC
Q 024372 212 FWDANHFGLVKGYNMPCNTESASLE-PKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 212 ~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
|||....+++.-......+. -|+. .+---.|++.|-|.-|++|--.
T Consensus 420 iW~K~t~eii~~MegDr~VV-NCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVV-NCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred EEecchhHHHHHhhcccceE-eccCCCCCCchhhccCCccceeeecCC
Confidence 99998887776555443322 2222 2235578999999999999753
No 237
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.7e-10 Score=97.12 Aligned_cols=219 Identities=14% Similarity=0.035 Sum_probs=127.1
Q ss_pred cCCCeeeEEEecCCCCCcEE---EEEeCCCCeEEe--eCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-C----CCc
Q 024372 15 HSRPVVDLFYSPITPDGFFL---VSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFT 84 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l---~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~----D~~ 84 (268)
..+.+..=.|+ |||+.+ ...-.++.-.|| ++..|+.. .+....+.....+|+|||+.|+..+ . |..
T Consensus 183 ~~~~~~sP~wS---PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 183 EHSLSITPTWM---HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred CCCCcccceEc---cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 34455556777 588642 345555554554 77766533 2222344455678999998877544 2 223
Q ss_pred EEEEeCCCC---CeeeeeccC-CeEEEEEECCCCCEEEEee-CCCeEEEEE--CCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 85 AKLWDALTG---DEKHSFEHK-HIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 85 v~iw~~~~~---~~~~~~~~~-~~v~~v~~~~~~~~l~s~~-~d~~i~~~d--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
+.+|++..+ ......... ......+|+|||+.|+..+ .++...+|. +..............+.+....|+|++
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444776542 222222222 2335678999999777655 456555564 332111223333333456678899999
Q ss_pred CcEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCCceeeeEEeCCCCce
Q 024372 158 QTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVKGYNMPCNTE 231 (268)
Q Consensus 158 ~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~~~~~~~~~~~~~~~ 231 (268)
..++.+...+ ..|.+||+.+++..........+....|+|||+.|+. +. ...|.++|+...+............
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~ 418 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKR 418 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCccc
Confidence 8776665443 3699999998876554433335677899999987753 32 3568888987665443333222233
Q ss_pred eeEEcC
Q 024372 232 SASLEP 237 (268)
Q Consensus 232 ~~~~~~ 237 (268)
...|+|
T Consensus 419 ~p~Ws~ 424 (428)
T PRK01029 419 FPSWGA 424 (428)
T ss_pred CceecC
Confidence 444444
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=7.4e-09 Score=88.24 Aligned_cols=243 Identities=16% Similarity=0.192 Sum_probs=155.2
Q ss_pred eeeEEEecCCCCCcEEEEEeCC----CCeEEeeCCC--CCe--EEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEe
Q 024372 19 VVDLFYSPITPDGFFLVSASKD----SSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWD 89 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d----~~i~iw~~~~--~~~--~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~ 89 (268)
..-++++ |++++|.++... +.|..|.+.. +++ +.+.......-.-++++|++++++.+. .++++.+++
T Consensus 39 Ps~l~~~---~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 39 PSWLAVS---PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp ECCEEE----TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEEE---eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 3456676 488899988774 5777776554 443 333332223445688999999988777 589999999
Q ss_pred CCCCC-eee---eecc-----------CCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeE----ecCCcccEE
Q 024372 90 ALTGD-EKH---SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE----VGNSSGSIR 149 (268)
Q Consensus 90 ~~~~~-~~~---~~~~-----------~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~----~~~~~~~v~ 149 (268)
+.... ... .+.+ .....++.++|+++.+++.. ....|.+|++......... .......-.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 97643 211 1211 12467889999999887753 3457899998654422211 122334567
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc--eEEeecC-------CCCEEEEEECCCCcEEEEe--CCCeEEEEeCC
Q 024372 150 TVAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLET-------KSPVTSAEVSRDGRYITTA--DGSSVKFWDAN 216 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~-------~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~ 216 (268)
.+.|+|++..+++.+-.+++|.++++. +++ .++.+.. ......+.++|||++|..+ ..+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 889999988888888888999999987 443 2333321 1247889999999998665 35789999983
Q ss_pred C--c--eeeeEEeC-CCCceeeEEcCCCCCEEEecc-CCCeEEEEEC--CCCcEEee
Q 024372 217 H--F--GLVKGYNM-PCNTESASLEPKLGNIFIAGG-EDMWVHVFDF--HTGEQIAI 265 (268)
Q Consensus 217 ~--~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs-~d~~i~~wd~--~~g~~~~~ 265 (268)
. + +.+..+.. ...+..+.+++ +|++|+++. .++.|.+|++ ++|.+..+
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 2 2 33444443 33467777777 688777665 5668999876 57776544
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=3.3e-10 Score=99.71 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=122.1
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCC-C--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCCCc--
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFT-- 84 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D~~-- 84 (268)
.+..+.+++....|+| ||++|+..+.+ + .|.+||+.+++... +..-.+.....+|+||++.++ +.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 3344566777888985 99988877543 3 46677888876432 222223344678999998775 4566665
Q ss_pred EEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEE
Q 024372 85 AKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (268)
|+++|+.+++......+........|+||++.++..+. ++ .|.++|+.+++. ..............|+|++..++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEEecCCCCCcCeeECCCCCEEE
Confidence 77778887765544444445567889999998776543 33 455567654432 22221222233468899988776
Q ss_pred EEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e-CCC--eEEEEeCC
Q 024372 162 SSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DGS--SVKFWDAN 216 (268)
Q Consensus 162 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~~--~v~~wd~~ 216 (268)
.+...++ .|.++|+.+++....... .......|+|||++++. . .++ .+.+++..
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 6655445 455678888765332222 12224579999998754 2 232 36677763
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=1.3e-11 Score=99.26 Aligned_cols=191 Identities=15% Similarity=0.191 Sum_probs=134.6
Q ss_pred EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCCCeEEEEECCCCCCCCeEecCC
Q 024372 66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNS 144 (268)
Q Consensus 66 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d~~i~~~d~~~~~~~~~~~~~~ 144 (268)
-++|+|+|+++|++++- .+.|-|.++-+..+.+..-+.|..+.|..+...++. ...++.+.+|++..++...... ..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cC
Confidence 47899999999998865 777888888777666655556677788887765554 5677899999997665433333 34
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCC----------------
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS---------------- 208 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------------- 208 (268)
..++..++|+|++.+++.++.-+-.|.+|.+-+.++...--.+..+..++|+|||+|.+..+-+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 5678899999999999988888889999999887776543344557889999999987653211
Q ss_pred ---------------------eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 209 ---------------------SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 209 ---------------------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
.+-+||.--.-.+..|.-.-+.....++| .+++++.|+.|+.+|+-|--+
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceee
Confidence 23344421100111233333455666776 699999999999998866433
No 241
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.38 E-value=3.2e-11 Score=96.49 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=127.8
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC-CCCCeEEE--eeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~-~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
..-.+..|...|++++|+| ..+.|++++.|....+|.. ..+++..+ |.-|...+.++.|+|++..+|.||.-+.
T Consensus 47 ~~htls~Hd~~vtgvdWap---~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~ 123 (361)
T KOG1523|consen 47 PAHTLSEHDKIVTGVDWAP---KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL 123 (361)
T ss_pred eceehhhhCcceeEEeecC---CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE
Confidence 3445667999999999997 4558999999999999988 66655433 3457889999999999999999999999
Q ss_pred EEEEeCCCCCe-----eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC-----CCCC------------CCCeEec
Q 024372 85 AKLWDALTGDE-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL-----NRPD------------APPREVG 142 (268)
Q Consensus 85 v~iw~~~~~~~-----~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~-----~~~~------------~~~~~~~ 142 (268)
|-||-++..+- ....++...|.++.|+|++-+|++|+.|+..|+|.. ++.. .+..+..
T Consensus 124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~ 203 (361)
T KOG1523|consen 124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS 203 (361)
T ss_pred EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc
Confidence 99998765432 112245678999999999999999999999999963 1110 0111222
Q ss_pred CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc
Q 024372 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179 (268)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 179 (268)
...+.+..+.|+|++..+.-.+.+ ..+.+=|....+
T Consensus 204 ~~ggwvh~v~fs~sG~~lawv~Hd-s~v~~~da~~p~ 239 (361)
T KOG1523|consen 204 SSGGWVHGVLFSPSGNRLAWVGHD-STVSFVDAAGPS 239 (361)
T ss_pred cCCCceeeeEeCCCCCEeeEecCC-CceEEeecCCCc
Confidence 345789999999988777666654 889998876554
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=7.8e-12 Score=113.27 Aligned_cols=145 Identities=20% Similarity=0.302 Sum_probs=117.8
Q ss_pred CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee--eeccCCeE
Q 024372 28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV 105 (268)
Q Consensus 28 ~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~~v 105 (268)
+++-.++++|+.-+.+.+|.....+.-..+.||++.++.+.++.+|.+++|.|.|.++|+|++.+.+... -+.|+..+
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 3567899999999999999887433223588999999999999999999999999999999999887654 56799999
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 106 ~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 176 (268)
..++|.|+ .++|++-|-+.++|+.+.... .....+....+..++. +.+..+..++.+|+.+++||+-
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEeccccee-hhhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhh
Confidence 99999998 899999999999998664332 2333344556778776 4566677788889999999874
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=1.4e-09 Score=87.26 Aligned_cols=229 Identities=13% Similarity=0.205 Sum_probs=145.4
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC------CcEEEEeCC
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD------FTAKLWDAL 91 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D------~~v~iw~~~ 91 (268)
...++|+. |-.-++.|. |.-.+||+.+--+....-.-+.+.+.-+.+=-...++| .||.. ..|.|||=.
T Consensus 8 ~lsvs~NQ---D~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQ---DHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEcc---CCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 34588874 444455454 44568887765332211121222211111111223333 34333 479999977
Q ss_pred CCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe---cCCcccEEEEEEeCCCCcEEEE--eeC
Q 024372 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSS--CTD 166 (268)
Q Consensus 92 ~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~--~~~ 166 (268)
...++.++....+|..|.+.++. ++.. ..+.|.+|.....-.....+ .+.+| ..++ .|.....+++ |..
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~--~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSL--CPTSNKSLLAFPGFK 157 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEee--cCCCCceEEEcCCCc
Confidence 77888888899999999998774 4333 35789999876322222222 22333 2222 3433333333 344
Q ss_pred CCeEEEEeCCCCce--EEeec-CCCCEEEEEECCCCcEEEEe-CCCe-EEEEeCCCceeeeEEeC---CCCceeeEEcCC
Q 024372 167 SGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDGRYITTA-DGSS-VKFWDANHFGLVKGYNM---PCNTESASLEPK 238 (268)
Q Consensus 167 d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~-v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~ 238 (268)
-|.|+|-|+...+. -..++ |...+.|++++-+|.+++++ ..|+ |||||.++++++..+.. +.....++++|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp- 236 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP- 236 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-
Confidence 47999999987655 23344 56789999999999999875 4454 79999999999888764 33466777777
Q ss_pred CCCEEEeccCCCeEEEEECC
Q 024372 239 LGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 239 ~~~~~~~gs~d~~i~~wd~~ 258 (268)
+..+|+++|.-++++++.++
T Consensus 237 ~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CccEEEEEcCCCeEEEEEee
Confidence 69999999999999999875
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.5e-09 Score=95.53 Aligned_cols=217 Identities=14% Similarity=0.080 Sum_probs=129.8
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC-CC--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 118 (268)
.+.++|..... .+.+-.+...+....|+||++.++..+. ++ .|++||+.+++.......+.......|+||++.|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 44455654332 3345456778888999999998876553 33 58888998776543322233344678999999776
Q ss_pred E-eeCCCe--EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEE
Q 024372 119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (268)
Q Consensus 119 s-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (268)
. .+.++. |.++|+.++. ......+........|+|++..++.++..++ .|.++|+.+++..............
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence 4 455554 6667876543 2333333344566789999888776654434 5777788877754432222223456
Q ss_pred EECCCCcEEEEe-C-CC--eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEecc-CCC--eEEEEECCCCcEEe
Q 024372 194 EVSRDGRYITTA-D-GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDM--WVHVFDFHTGEQIA 264 (268)
Q Consensus 194 ~~s~~g~~l~~~-~-~~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~d~--~i~~wd~~~g~~~~ 264 (268)
.|+|||++++.. . ++ .|.++|+...... ............++| +|++++..+ .++ .+++++. +|+...
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRFKA 430 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence 899999887643 2 33 4556787665432 222111222346777 577666544 333 4788887 454433
No 245
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.37 E-value=3.2e-09 Score=101.92 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=153.6
Q ss_pred eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-cc-------------CcEEEEEecCCCcEE-EEeeCCCc
Q 024372 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HK-------------GAVWSCCLDANALFS-ASGSADFT 84 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~-------------~~V~~~~~~~~~~~l-~s~s~D~~ 84 (268)
..+++++ .+|.+.++-+.++.|+++|.. |+.+..+.+ .. ..-..+++.+++..+ ++-...+.
T Consensus 571 ~gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 3567764 256777888888899999974 555544432 11 124678888877644 44455688
Q ss_pred EEEEeCCCCCeeeeecc-----------------CCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEec----
Q 024372 85 AKLWDALTGDEKHSFEH-----------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG---- 142 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~~-----------------~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---- 142 (268)
|+++|..++........ -..-..++++| ++.++++...++.|++||...+.. ..+.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGY 725 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCc
Confidence 99999876553221110 01124688999 666777777889999999765321 1110
Q ss_pred -----C------CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-------------cC---------CCC
Q 024372 143 -----N------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-------------ET---------KSP 189 (268)
Q Consensus 143 -----~------~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-------------~~---------~~~ 189 (268)
. .-.....++++|++..++++...++.|++||+.++...... .. -..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0 01123468888988878778778899999999876532111 00 012
Q ss_pred EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--------------CCceeeEEcCCCCCEEEeccCCCeEEE
Q 024372 190 VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHV 254 (268)
Q Consensus 190 v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~gs~d~~i~~ 254 (268)
...++++++|+++++ ..++.|++||..+.......... ..+..+++.+ +|+++++-+.+..|++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEE
Confidence 458899999987665 46789999999776443222110 1234456666 6899999899999999
Q ss_pred EECCCCcE
Q 024372 255 FDFHTGEQ 262 (268)
Q Consensus 255 wd~~~g~~ 262 (268)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988865
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=1.4e-08 Score=85.50 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=147.0
Q ss_pred CCCcEEEEEeC----------CCCeEEeeCCCCCeEEEeeCccC-------cEEEEEecCCCcEEEEee-C-CCcEEEEe
Q 024372 29 PDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDANALFSASGS-A-DFTAKLWD 89 (268)
Q Consensus 29 ~dg~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~h~~-------~V~~~~~~~~~~~l~s~s-~-D~~v~iw~ 89 (268)
|||+.|..+.. +..|.+||..+++.++++.--.. .-...+++|||++++... . +..|-+.|
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD 134 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD 134 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEE
Confidence 58888877765 78899999999999988864211 223678899999887555 3 78999999
Q ss_pred CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC----eEecCCcccEEEE-EEeC-CCCcEEEE
Q 024372 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----REVGNSSGSIRTV-AWLH-SDQTILSS 163 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----~~~~~~~~~v~~~-~~~~-~~~~~~~~ 163 (268)
+.+++.+..+..+........+.+...+. +.|+......+....... ..+.....++..- .+.+ ++..++++
T Consensus 135 ~~~~kvv~ei~vp~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 135 LEGKAFVRMMDVPDCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred CCCCcEEEEEeCCCCcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99999988887655443333333332221 233333332222111100 0000000011000 2345 45445544
Q ss_pred eeCCCeEEEEeCCCC-----ceEEeecC--------CCCEEEEEECCCCcEEEE-eC----------CCeEEEEeCCCce
Q 024372 164 CTDSGGVRLWDARSG-----KIVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG 219 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~-----~~~~~~~~--------~~~v~~~~~s~~g~~l~~-~~----------~~~v~~wd~~~~~ 219 (268)
.. |+|.+-|+... +.+..+.. ...+.-++++|+++.+.. .. ++.|.++|..+.+
T Consensus 213 -~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 213 -YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred -cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 44 99999996433 33333321 123455999999876543 21 2589999999999
Q ss_pred eeeEEeCCCCceeeEEcCCCCC-EEEec-cCCCeEEEEECCCCcEEeec
Q 024372 220 LVKGYNMPCNTESASLEPKLGN-IFIAG-GEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g-s~d~~i~~wd~~~g~~~~~~ 266 (268)
.+..+........+.++++ ++ +|++. ..++.|.++|+.+++.+...
T Consensus 291 vi~~i~vG~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 291 RLRKIELGHEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEeCCCceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9998888778888888884 66 66644 46788999999999888754
No 247
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.9e-10 Score=93.64 Aligned_cols=188 Identities=12% Similarity=0.191 Sum_probs=130.0
Q ss_pred CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCC-
Q 024372 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAP- 137 (268)
Q Consensus 62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~- 137 (268)
-.++.++|++.-.-+|.+..|-+||+++-.. .+...+. .+..|.+++|-|. .+.|+.|+..| |-+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3467788988666678889999999998766 4444444 3457999999994 45777777654 678965321100
Q ss_pred ------------CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee-cCCCCEEEEEECCCCcEEEE
Q 024372 138 ------------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITT 204 (268)
Q Consensus 138 ------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~ 204 (268)
.....+| .+|++++|.+++..++.++.+|..|.|||+.++..+... ..-+.+.-+.|||||.++.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 0111123 589999999998888888888899999999999877655 34466888999999998776
Q ss_pred e-CCCeEEEEeC-CCceeeeEEeCCCCceeeEEcCCCCCEE-EeccCCCeEE
Q 024372 205 A-DGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIF-IAGGEDMWVH 253 (268)
Q Consensus 205 ~-~~~~v~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gs~d~~i~ 253 (268)
+ -|+..++|.. +.+...+-.-.+..+...+++|. |++| ++.+..-.+|
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspc-GsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPC-GSFLLFACSGSPRLY 306 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCC-CCEEEEEEcCCceEE
Confidence 5 5889999964 33333332333445667788885 6654 4555554444
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1.9e-09 Score=85.58 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=151.9
Q ss_pred CeeeEEEecCCCCCc-EEEEEeCCCCeEEeeCCCCCeEEEeeCc---cCc---EEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 18 PVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGH---KGA---VWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~-~l~s~s~d~~i~iw~~~~~~~~~~~~~h---~~~---V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.+..+.|.-.-.+|. .|+-+-.+|.|+++....-+-...|++= +-. -.++.|++.+..++++-.+|.+-+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 455666654434555 6777888999999866554444444432 112 235567777777777777777774443
Q ss_pred CCCCeee--ee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC-CeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 91 LTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 91 ~~~~~~~--~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
....... .+ .|.-+...+.|+. +.+++++|+.|+.+..||++.+..- .+...-|...|.+|.-+|+.+..+++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 3322222 33 3777788888876 5679999999999999999844321 1112235667888888888889999999
Q ss_pred CCCeEEEEeCC-CCceEEeecCCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCc--e---eeeEEeCCC-CceeeEEc
Q 024372 166 DSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHF--G---LVKGYNMPC-NTESASLE 236 (268)
Q Consensus 166 ~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~--~---~~~~~~~~~-~~~~~~~~ 236 (268)
.|-.|++||+| -++++..-...+.|-.+..+|.- +++++.=-+..++-+.... + .+..++.+. ......+.
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred cccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence 99999999999 57777665556778899998853 2333221112222232211 1 122233322 22333343
Q ss_pred CCCCCEEEecc-CCCeEE-EEECCCCcE
Q 024372 237 PKLGNIFIAGG-EDMWVH-VFDFHTGEQ 262 (268)
Q Consensus 237 ~~~~~~~~~gs-~d~~i~-~wd~~~g~~ 262 (268)
. -...|+|++ .|+.|+ +|-.-+|+.
T Consensus 311 ~-~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 311 S-KDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred c-ccceeeeeeccccceeeeeeeccCCc
Confidence 3 245688875 688866 897766653
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.5e-09 Score=93.50 Aligned_cols=222 Identities=13% Similarity=0.034 Sum_probs=128.1
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE--E-EEeeCCC--cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-ASGSADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-~s~s~D~--~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 116 (268)
.+.+.|...+. ...+......+.+-+|+|||+. + ...-.++ .|.+.++.++........+.......|+|||+.
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 34444544333 3334444556677789999864 3 2333443 566668877765444434444556789999988
Q ss_pred EEEeeC-----CCeEEEEECCCCC-CCCeEec-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEE--eCCC-CceEEeec-
Q 024372 117 LLTGGF-----EKILRIFDLNRPD-APPREVG-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLE- 185 (268)
Q Consensus 117 l~s~~~-----d~~i~~~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw--d~~~-~~~~~~~~- 185 (268)
|+..+. +-.+..|++..+. ....... ...+......|+|++..++.++..+|...|| ++.. +.....+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 876542 2233446665421 1122222 2223345678999998777666555655555 4432 22233332
Q ss_pred CCCCEEEEEECCCCcEEEE-eC---CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEe-ccC--CCeEEEEECC
Q 024372 186 TKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGE--DMWVHVFDFH 258 (268)
Q Consensus 186 ~~~~v~~~~~s~~g~~l~~-~~---~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~--d~~i~~wd~~ 258 (268)
....+....|+|||+.|+. +. ...|.+||+...+...............++| +|++|+. +.. ...|++||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 2334567899999998764 32 2468999998775543322223344567777 5776664 332 4579999998
Q ss_pred CCcEEee
Q 024372 259 TGEQIAI 265 (268)
Q Consensus 259 ~g~~~~~ 265 (268)
+++....
T Consensus 404 ~g~~~~L 410 (428)
T PRK01029 404 TKKTRKI 410 (428)
T ss_pred CCCEEEe
Confidence 7776544
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.7e-10 Score=104.74 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=144.1
Q ss_pred cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeE-----EEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-----RACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (268)
.|....+.....+++....+..+-+||...........+.+.. .-+.++++..++++|+--++|.+|... ....
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-EDNK 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-ccCC
Confidence 3444555566677788888889999999888877777666532 234568888899999999999999986 3333
Q ss_pred CeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE--eecCCCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 138 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
......|.+.+..+.++.++ .++++.++|+++|+|++.+++... -|.|.+.+-.+++.|+ +.++.+.|-+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEec
Confidence 44566789999999998765 467778899999999999988765 3567778999999999 6666788999999975
Q ss_pred CCceeeeEEeCCC--CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 216 NHFGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.. ..+..|..+. ....+...+ ...+.+|++.|+.+++|+..
T Consensus 246 ~~-~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cc-ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhh
Confidence 43 2334554332 345555554 46788899999999999975
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=2.4e-10 Score=97.28 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=114.7
Q ss_pred cCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--eC--ccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeec
Q 024372 26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EG--HKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFE 100 (268)
Q Consensus 26 ~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--~~--h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~ 100 (268)
+-+++|.-|+.|-.-|.+++.|....+..+.| .. .+..|.++.|-|.+. .++.+-++|.++++|.+..-.
T Consensus 180 ~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~----- 254 (636)
T KOG2394|consen 180 TATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG----- 254 (636)
T ss_pred ccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-----
Confidence 34578888999999999998887764322222 11 246799999976543 445556789999998621110
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce
Q 024372 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (268)
Q Consensus 101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 180 (268)
.+. .+-...+++..+.... |--.....+.......++.+..++|++++.+++ +-+.||.+||+|..+.+.
T Consensus 255 ~t~--p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA-~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 255 ATA--PSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLA-TVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred CCC--CcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEE-EEecCceEEEeeccHHHH
Confidence 000 0111122333333211 100000011222222345788999999776554 556779999999998776
Q ss_pred EEeec-CCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeE
Q 024372 181 VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG 223 (268)
Q Consensus 181 ~~~~~-~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~ 223 (268)
+..++ .-+...|++|||||+||+++ +|.-|.+|.+...+.+..
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 65554 24668999999999999875 788999999977766644
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.2e-10 Score=95.69 Aligned_cols=185 Identities=12% Similarity=0.202 Sum_probs=137.8
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCCeEEEee--Ccc-Cc----EE--EEEecC--------------CCcEEEEeeCCCcE
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHK-GA----VW--SCCLDA--------------NALFSASGSADFTA 85 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~-~~----V~--~~~~~~--------------~~~~l~s~s~D~~v 85 (268)
|.+.|+|..+.||-++||+..++++...|. .|. +. ++ .+..+| +...++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 457899999999999999999987766552 111 11 11 111222 34456777778999
Q ss_pred EEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEE
Q 024372 86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (268)
.+++...++....+. |...|.++.++.+..++.+++.|..+-.|+.... .........+..+.+++++|++..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~~l~- 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGKILL- 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCCEEE-
Confidence 999999999877775 7889999999999999999999999999997543 23344444455677888899865444
Q ss_pred EeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCC-----CcEEEEeC--CCeEEEEeCCC
Q 024372 163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRD-----GRYITTAD--GSSVKFWDANH 217 (268)
Q Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~-----g~~l~~~~--~~~v~~wd~~~ 217 (268)
+++ ++|++||+.+++.+.+|.+| ++|.++.|.-+ |+++.+++ ++.+.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 433 78999999999999999876 56899998776 77877654 46677886643
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-11 Score=105.23 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=135.1
Q ss_pred EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-------CCeeeee-ccCCeEEEEEECCCCCEEEEeeCCCe
Q 024372 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI 125 (268)
Q Consensus 54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-------~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d~~ 125 (268)
+..|.||+..|+.++--.+..-+++++.|++|++|.+.. ..+..++ .|+.+|..+.|-.+.+.+++ -|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 456789999999987666666778999999999999853 2244444 38999999999888877764 5789
Q ss_pred EEEEECCCCCCCCeEec----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC------CCCEEEEEE
Q 024372 126 LRIFDLNRPDAPPREVG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEV 195 (268)
Q Consensus 126 i~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~------~~~v~~~~~ 195 (268)
|.+||.--+....+... ...+.|.|+- +-+...+++.|+...+|+++|.|.++.+..++. ...+.++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999755444332221 1122344432 112334566668889999999999987665532 234789999
Q ss_pred CCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEE-EECC
Q 024372 196 SRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHV-FDFH 258 (268)
Q Consensus 196 s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~-wd~~ 258 (268)
.|.|+.++.+ ++|.|.+-|.+++..+..+.-- .........++++.++....|-.+-| |..-
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaapsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAAPSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcCchhHHHHhhcccceeEeeehhc
Confidence 9999998765 6789999999998877655421 11112222234555555555666666 6543
No 254
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.2e-11 Score=104.10 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=156.5
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-C------CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-G------DWIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-~------~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~ 84 (268)
+.||++.|++++--. +.+-++++|.|+++++|.++. | .+..++..|+.+|..+.|-.+.++++++ |+-
T Consensus 731 f~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 359999999886542 345688999999999998753 1 2667788999999999998888888766 999
Q ss_pred EEEEeCCCCCeeeeec---cCCeEEEEEE--CCCCCEEEEe-eCCCeEEEEECCCCCCCCeEe----cCCcccEEEEEEe
Q 024372 85 AKLWDALTGDEKHSFE---HKHIVRACAF--SEDTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWL 154 (268)
Q Consensus 85 v~iw~~~~~~~~~~~~---~~~~v~~v~~--~~~~~~l~s~-~~d~~i~~~d~~~~~~~~~~~----~~~~~~v~~~~~~ 154 (268)
+.+||.-.+....... ....+..+.. +-+..+++.| +...+++++|.+..+...... ...++.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987666544221 1122222222 3255566665 788999999987654332211 2345678899988
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEE-EeCCCeEEE-EeCCCceeeeEEeCCCCce
Q 024372 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTE 231 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~-~~~~~~v~~-wd~~~~~~~~~~~~~~~~~ 231 (268)
+.+.++.++ -..|.|-+.|.|+|..+.... +......++- |...+++ +..|..+-+ |..-.+. -.++.+.++.
T Consensus 886 ~~GN~lAa~-LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgi--mh~q~kpppe 961 (1034)
T KOG4190|consen 886 DKGNKLAAA-LSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI--MHLQDKPPPE 961 (1034)
T ss_pred cCcchhhHH-hcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCe--eeeccCCCCc
Confidence 877766555 445999999999999887654 3444444443 3334444 445777777 7654432 2233333334
Q ss_pred eeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 232 SASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 232 ~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
...+...-|.-++++.....+.||.
T Consensus 962 pahflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 962 PAHFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhhhhccCceeEEeccCcEEEEEe
Confidence 4444333466788888888888885
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.5e-09 Score=91.55 Aligned_cols=237 Identities=17% Similarity=0.250 Sum_probs=144.5
Q ss_pred CeeeEEEecCCCCCcEEEEE-----eC-----CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 18 PVVDLFYSPITPDGFFLVSA-----SK-----DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~-----s~-----d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
.+.++.|+| -|.+|.+- .. .-.+++|+++++-....+......-+...|+.|..+.|- -..+.+.+
T Consensus 75 ~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQF 150 (566)
T ss_pred eeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEE
Confidence 677888886 67788664 22 244569999996555555432222256788887765332 12456788
Q ss_pred EeCCCCCeeeeeccCCeEEEE----------------------------------------------------EECCCCC
Q 024372 88 WDALTGDEKHSFEHKHIVRAC----------------------------------------------------AFSEDTH 115 (268)
Q Consensus 88 w~~~~~~~~~~~~~~~~v~~v----------------------------------------------------~~~~~~~ 115 (268)
|+....+....--|...+... .|++-+.
T Consensus 151 ~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 151 YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 877553321111111122222 2333222
Q ss_pred -E--EEEeeCCC---------eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEE-eeCCCeEEEEeCCCCceEE
Q 024372 116 -L--LLTGGFEK---------ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS-CTDSGGVRLWDARSGKIVQ 182 (268)
Q Consensus 116 -~--l~s~~~d~---------~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~ 182 (268)
+ |++..-|+ ++.+.++.. ..........|+|.++.|++.+..+.+. |.---.+.|+|++ +..+.
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g--~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~ 307 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQG--ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVF 307 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecC--ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeE
Confidence 1 11221221 233334331 1112222346899999999988665443 4444589999998 56666
Q ss_pred eecCCCCEEEEEECCCCcEEE-EeC---CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC------CCeE
Q 024372 183 TLETKSPVTSAEVSRDGRYIT-TAD---GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE------DMWV 252 (268)
Q Consensus 183 ~~~~~~~v~~~~~s~~g~~l~-~~~---~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------d~~i 252 (268)
.+. .++-+++-|+|.|++++ +|- .|.|.+||+.+++++..+... +...+.|+| +|++|+|+.. |..+
T Consensus 308 df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~P-dGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 308 DFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSP-DGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred eCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcC-CCcEEEEEeccccEEecCCe
Confidence 554 35678999999999875 442 478999999998888766643 455677777 7999998865 6779
Q ss_pred EEEECCCCcEEee
Q 024372 253 HVFDFHTGEQIAI 265 (268)
Q Consensus 253 ~~wd~~~g~~~~~ 265 (268)
++|+. +|.+++.
T Consensus 385 Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 385 KIWHY-TGSLLHE 396 (566)
T ss_pred EEEEe-cCceeeh
Confidence 99996 6877764
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=9.3e-11 Score=111.62 Aligned_cols=191 Identities=13% Similarity=0.209 Sum_probs=140.6
Q ss_pred eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc--CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC
Q 024372 58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (268)
Q Consensus 58 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (268)
+.|-..|+.+.-+|...+-+||+.||.+++|....++.+..+.. +..|+.+.|+.+|+.+..+..||.+-+|... +
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P- 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C-
Confidence 33455676666677777778999999999999999888777753 3568888899999999999999999999975 2
Q ss_pred CCCeEecCCcccEEEEEEeCCCCcEEEE--eeCCCeEEEEeCCC---CceEEeecCCCCEEEEEECCCCcEEEEe-CCCe
Q 024372 136 APPREVGNSSGSIRTVAWLHSDQTILSS--CTDSGGVRLWDARS---GKIVQTLETKSPVTSAEVSRDGRYITTA-DGSS 209 (268)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~~i~iwd~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~ 209 (268)
.+......|.-....+.|... .++.+ +++++.+-+||.-. ..+++ .-|...+.++++.|....++++ .+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCc
Confidence 222333355556666776642 12222 35667899999732 23455 3455678999999998877664 6899
Q ss_pred EEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 210 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
|++||++...++.+|+. +. ..++|++|+..|.|++|++..=..+
T Consensus 2360 v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred EEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchh
Confidence 99999988776665554 22 4789999999999999998654443
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=3.7e-10 Score=90.40 Aligned_cols=237 Identities=17% Similarity=0.272 Sum_probs=153.0
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC-----CCeEEEeeCcc------------CcEEEEEecCCC--cE
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHK------------GAVWSCCLDANA--LF 75 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~h~------------~~V~~~~~~~~~--~~ 75 (268)
..+.|+++.|.. .|.||++|-..|.+.++.-+. .++...|++|+ ..|..+.|-.++ ..
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 456789999974 789999999889998885433 23455567775 346777765433 23
Q ss_pred EEEeeCCCcEEEEeCCCCCe------------------------------------------eee--eccCCeEEEEEEC
Q 024372 76 SASGSADFTAKLWDALTGDE------------------------------------------KHS--FEHKHIVRACAFS 111 (268)
Q Consensus 76 l~s~s~D~~v~iw~~~~~~~------------------------------------------~~~--~~~~~~v~~v~~~ 111 (268)
++-...|++|++|.+..... .+. -.|+--+++++|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 45556799999999854310 000 0144457889999
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCCCCCeE--ecCC-----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce----
Q 024372 112 EDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---- 180 (268)
Q Consensus 112 ~~~~~l~s~~~d~~i~~~d~~~~~~~~~~--~~~~-----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---- 180 (268)
.|...++++ .|-.|.+|+++-....... +..| ...|++..|.|...+++..++..|+|++-|+|....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998888875 5678999998644322221 1122 224667778887777766666779999999994321
Q ss_pred EEee----cC---------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCC-ceeeeEEeCCCCc----------------
Q 024372 181 VQTL----ET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNT---------------- 230 (268)
Q Consensus 181 ~~~~----~~---------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~-~~~~~~~~~~~~~---------------- 230 (268)
.+.+ .+ ...+..+.|+++|+++++-+=-+|++||.+. ..++++.+.++..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 1111 11 1357789999999999887667999999865 3567777654210
Q ss_pred eeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 231 ESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 231 ~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
..+.++. +.+.+.+||....--+|-
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecC-Ccccccccccccceeeec
Confidence 1223333 456677777655544554
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=1e-10 Score=111.32 Aligned_cols=196 Identities=19% Similarity=0.278 Sum_probs=140.2
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
|=+.|.++.-+|..| +-+||+.||.+++|....+..+..++. -.+.|..+.|+.+|..+.-+-.||.+-+|.+. .
T Consensus 2207 ~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 344566666666444 567999999999999888888777752 23789999999999888888889999999987 3
Q ss_pred Ceeeee-ccCCeEEEEEECCCCCEEEEe---eCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 94 DEKHSF-EHKHIVRACAFSEDTHLLLTG---GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 94 ~~~~~~-~~~~~v~~v~~~~~~~~l~s~---~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
++.... .|........|-. ..++++ +.++.+.+||...+....-.-..|.+..+++++.|..+ ++.+|+.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCc
Confidence 333333 2555555555433 455554 46688999997543322222256888999999999876 5557778899
Q ss_pred EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCCceeeeEEeC
Q 024372 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~~~~~~~~~~ 226 (268)
|.+||+|..+.+++++. +. ...+++ .+..|.++||++....+++++..
T Consensus 2360 v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99999998888777764 33 333444 45678999999988877776653
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=3.7e-07 Score=74.82 Aligned_cols=245 Identities=13% Similarity=0.172 Sum_probs=158.9
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCC---CCeEEe--eCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeC-CCcE
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKD---SSPMLR--NGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSA-DFTA 85 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d---~~i~iw--~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~~v 85 (268)
.+.+-.+=++|+| ++++|.++-.+ +.+..+ |..+|++. .....-..+-.-++++++++++++++. -+.|
T Consensus 37 ~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 4555666677874 77788888665 555554 55557643 111112223366889999999988884 5889
Q ss_pred EEEeCCCCC-e---eeeeccCCe----------EEEEEECCCCCEEEEee-CCCeEEEEECCCCCCCCeEe--cCCcccE
Q 024372 86 KLWDALTGD-E---KHSFEHKHI----------VRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREV--GNSSGSI 148 (268)
Q Consensus 86 ~iw~~~~~~-~---~~~~~~~~~----------v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~~~~~~--~~~~~~v 148 (268)
.++.+.+.. . .....|... +....+.|++++|++.. .--.|.+|++..+....... ......-
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 999986532 2 223334333 77888999999888864 22357899988654332211 1234456
Q ss_pred EEEEEeCCCCcEEEEeeCCCeEEEEeCCCC----ceEEeec-------CCCCEEEEEECCCCcEEEEeC--CCeEEEEeC
Q 024372 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSG----KIVQTLE-------TKSPVTSAEVSRDGRYITTAD--GSSVKFWDA 215 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~ 215 (268)
..+.|.|+++...+.+--+++|-+|..... ++++.+. .......|.++|||+||-+++ ...|-+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 789999988876666777789999988663 2344332 234577899999999998775 247888877
Q ss_pred CCc-eeeeEE---eC-CCCceeeEEcCCCCCEEEeccCCC-eEEEEEC--CCCcE
Q 024372 216 NHF-GLVKGY---NM-PCNTESASLEPKLGNIFIAGGEDM-WVHVFDF--HTGEQ 262 (268)
Q Consensus 216 ~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~gs~d~-~i~~wd~--~~g~~ 262 (268)
... ..+... .. ...+..+.+.+ .+++|+++.+++ .|.+|.. +||++
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 543 223222 22 22356777777 689888887754 6888865 36664
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.18 E-value=7e-10 Score=91.36 Aligned_cols=157 Identities=16% Similarity=0.182 Sum_probs=110.8
Q ss_pred CCCCcEEEEEeCCCCeEEeeCCCC----CeEEEeeCcc--CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc
Q 024372 28 TPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHK--GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH 101 (268)
Q Consensus 28 ~~dg~~l~s~s~d~~i~iw~~~~~----~~~~~~~~h~--~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 101 (268)
+++|++||.+..++.+.+++.... +++..+..-+ ..+..+..+.........+....+.+|....+.+...+.|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGh 150 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGH 150 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhh
Confidence 468899999988888766654432 3443333322 2344444443333344566778888888777777777889
Q ss_pred CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE
Q 024372 102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181 (268)
Q Consensus 102 ~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 181 (268)
-.-+..|+++||++.++++..|..||+-.............+|+.-|..++.-+ ++. +++++.|++|++||+++|+++
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~-LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYL-LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Cce-eeecCCCCcEEEEecccCCcc
Confidence 899999999999999999999999998766544333344456777888888654 444 455566799999999999998
Q ss_pred EeecC
Q 024372 182 QTLET 186 (268)
Q Consensus 182 ~~~~~ 186 (268)
+++..
T Consensus 229 ~t~dl 233 (390)
T KOG3914|consen 229 DTCDL 233 (390)
T ss_pred cccch
Confidence 77653
No 261
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-09 Score=90.83 Aligned_cols=246 Identities=18% Similarity=0.206 Sum_probs=166.0
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--C-CeEEEeeCccCcEEEEEecCCCcEEEEeeC-CCcEEEEeC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--G-DWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA 90 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-D~~v~iw~~ 90 (268)
|...|+-+.-. -.+++.+||.||.++.|-... | +.+..++.|-+.|.+++.+.++..+.|.+. |+.+|++|+
T Consensus 8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 77778766432 346999999999999996543 3 577788899999999999999999999887 999999999
Q ss_pred CCCCeeeeeccCCeEEEEEE-CCCC---CEEE-EeeCCCeEEEEECCCCCCC-CeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 91 LTGDEKHSFEHKHIVRACAF-SEDT---HLLL-TGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 91 ~~~~~~~~~~~~~~v~~v~~-~~~~---~~l~-s~~~d~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
++.....-+.....-..+.| ...| ..++ +.-.++.|.++|......+ ......|..+|.++.+++.+...+ +.
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-Si 162 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SI 162 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-ec
Confidence 87654432222221112222 2222 1233 3346688999997644322 234456888999999998776544 44
Q ss_pred eCCCeEEEEeCCC------CceEEeec----------CCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC-
Q 024372 165 TDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM- 226 (268)
Q Consensus 165 ~~d~~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~- 226 (268)
...|-|.-|.... .+....++ .+....++.|+|+|..++. +.|..||+++.++++.++.+.-
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 4558899998762 11111111 1345678999999999875 5789999999987765543321
Q ss_pred -------C-C-------------------------CceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeecc
Q 024372 227 -------P-C-------------------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAITS 267 (268)
Q Consensus 227 -------~-~-------------------------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~~ 267 (268)
+ . ....++ +..++.+|+.|+-=| |+|.++.|+..+.++.
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~-fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV-FDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE-EcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 0 0 001123 334688888887765 9999999999887754
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.8e-09 Score=92.85 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=122.8
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCCeEEEee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeE
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIV 105 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v 105 (268)
.|-.+|+-|...|.+.++++..|+...++. +|-+.|.++.++.+-..|.|++.|+.+-.|+....+..+.+. .+..+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 356688999999999999999999988886 699999999999888899999999999999999988888775 44568
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC-----CCcEEEEeeCCCeEEEEeCCC
Q 024372 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-----DQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 106 ~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~d~~i~iwd~~~ 177 (268)
.+++.+||++.+++++ ++|++||+++.+ ....+.+|.++|++++|--. +.+++++..-+..+-+|=++.
T Consensus 148 ~sl~is~D~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISPDGKILLTAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcCCCCEEEecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8899999999999887 789999998754 56778899999999998654 456676655556788886654
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=1e-07 Score=82.26 Aligned_cols=227 Identities=17% Similarity=0.145 Sum_probs=133.0
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA 109 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~ 109 (268)
++..++.++.++.+..+|..+|+.+-+.... +.+.+.-... +..++.+..++.++.||..+++.+.......+...+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 3456777888888888888888765443321 1221111111 2344556678899999998888766654332211110
Q ss_pred --ECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcc--c------E-EEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 110 --FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSG--S------I-RTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 110 --~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~--~------v-~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
-+| .+..++.+..++.+..+|+++++...+.. ....+ . + ..... .++.++++ +.+|.+..||.
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~-~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV-SYQGRVAALDL 258 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE-EcCCEEEEEEC
Confidence 011 12366778888899999987765432211 00000 0 0 00111 13344544 45699999999
Q ss_pred CCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe-CCCCce-eeEEcCCCCCEEEeccCCCeEE
Q 024372 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPCNTE-SASLEPKLGNIFIAGGEDMWVH 253 (268)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~gs~d~~i~ 253 (268)
++|+.+...+... .....+ .++++++.+.++.+..+|..+++.+-.+. ...... +... .+..+++++.|+.|+
T Consensus 259 ~tG~~~W~~~~~~-~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 259 RSGRVLWKRDASS-YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLH 333 (377)
T ss_pred CCCcEEEeeccCC-ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEE
Confidence 9999877665321 111222 24455556678899999998887665442 211111 1111 366888899999999
Q ss_pred EEECCCCcEEeec
Q 024372 254 VFDFHTGEQIAIT 266 (268)
Q Consensus 254 ~wd~~~g~~~~~~ 266 (268)
++|.++|+++..+
T Consensus 334 ~~d~~tG~~~~~~ 346 (377)
T TIGR03300 334 WLSREDGSFVARL 346 (377)
T ss_pred EEECCCCCEEEEE
Confidence 9999999987543
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=5.8e-09 Score=82.90 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=108.7
Q ss_pred eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe--EEEeeCccCcEEEEEecCCC-cEEEEeeCCCcEEEEeCCCCC-ee
Q 024372 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGD-EK 96 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~--~~~~~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~-~~ 96 (268)
++.|++ .|..++++-.+|.+.+-+.....+ +++++.|+-..+.++|+... .++.|||.|+.+..||++..+ .+
T Consensus 126 slD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 126 SLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred EEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 556654 456688888888887555544433 44889999999999998654 577899999999999998332 21
Q ss_pred ee--eccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 97 HS--FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 97 ~~--~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
.. -.|...|.++.-+| .+..+++|++|..|++||.+.-..+...- ...|.|.-+.+.|...+.+.++.-.+..+|-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 11 12566777887776 67899999999999999998544333322 3457899999988776544444444667777
Q ss_pred eCCC
Q 024372 174 DARS 177 (268)
Q Consensus 174 d~~~ 177 (268)
+...
T Consensus 282 ~~~~ 285 (339)
T KOG0280|consen 282 DSSD 285 (339)
T ss_pred Eecc
Confidence 7654
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=2.5e-09 Score=86.67 Aligned_cols=199 Identities=15% Similarity=0.193 Sum_probs=135.1
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-----------------------------------eEEEe-e
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------------------------------WIGTF-E 58 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-----------------------------------~~~~~-~ 58 (268)
-++.|+.+.|.+.. ++..++..++|+++++|.++... +.+.+ .
T Consensus 83 ieEKinkIrw~~~~-n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN 161 (433)
T KOG1354|consen 83 IEEKINKIRWLDDG-NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN 161 (433)
T ss_pred hhhhhhhceecCCC-CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence 35678899998754 46677788999999999764321 01112 4
Q ss_pred CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee---c------cCCeEEEEEECC-CCCEEEEeeCCCeEEE
Q 024372 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---E------HKHIVRACAFSE-DTHLLLTGGFEKILRI 128 (268)
Q Consensus 59 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~---~------~~~~v~~v~~~~-~~~~l~s~~~d~~i~~ 128 (268)
+|.-.|.++++..|...+.|+ .|-.|.+|+++-......+ . ....|++..|+| ..++++-.+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 688889999999998877664 6889999998644332222 1 233588899999 4567777788999999
Q ss_pred EECCCCC-----CCCe----------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC-CCCceEEeecCCC----
Q 024372 129 FDLNRPD-----APPR----------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIVQTLETKS---- 188 (268)
Q Consensus 129 ~d~~~~~-----~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~---- 188 (268)
-|++... .... .+..-...|..+.|+++|..+++- .. -+|++||+ ...+++.+++.+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-cc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 9997321 1100 011112357788999887766543 33 79999999 5566676665431
Q ss_pred ------------CEEEEEECCCCcEEEEe-CCCeEEEEeCCC
Q 024372 189 ------------PVTSAEVSRDGRYITTA-DGSSVKFWDANH 217 (268)
Q Consensus 189 ------------~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~ 217 (268)
.-..++|+.++.++++| -....+++++..
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 22467889998888765 477889999643
No 266
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.09 E-value=7e-08 Score=77.67 Aligned_cols=216 Identities=16% Similarity=0.125 Sum_probs=127.5
Q ss_pred CCCeEEeeCCCCCeEEEeeC---ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCE
Q 024372 40 DSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (268)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 116 (268)
+++|..+|..+|+.+-...- ..+.+.. .+ +++..+..++.++.+..||..+++.+..+..+..+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 56778889888886655432 2222211 22 234556666899999999999999877776444322111 113445
Q ss_pred EEEeeCCCeEEEEECCCCCCCCeE-ecCC--cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-C---
Q 024372 117 LLTGGFEKILRIFDLNRPDAPPRE-VGNS--SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-P--- 189 (268)
Q Consensus 117 l~s~~~d~~i~~~d~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--- 189 (268)
++.+..++.+..+|..+++...+. .... ............+..++ .+..++.|..+|+++|+.+....... +
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLY-VGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEE-EEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEE-EEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 666667889999998877655442 2111 01111111111234444 44546999999999999987664322 1
Q ss_pred -------EEEEEECCCCcEEEEeCCCe-EEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCc
Q 024372 190 -------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (268)
Q Consensus 190 -------v~~~~~s~~g~~l~~~~~~~-v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~ 261 (268)
...-.+..++..++++.++. +.+ |+.+++.+-... ... ....... .+..++.++.++.|+.||.++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~-~~~~~~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-ISG-IYSLPSV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-SS--ECECEEC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-CCC-ccCCcee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 12233334555556665654 556 999987553222 122 2221233 46667776699999999999999
Q ss_pred EE
Q 024372 262 QI 263 (268)
Q Consensus 262 ~~ 263 (268)
.+
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=2e-07 Score=80.46 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=137.5
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA 109 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~ 109 (268)
.+.++..++.++.+.-+|..+|+.+-.++-.......... ++..++.++.|+.+..+|..+++.+........+.+..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 3557888999999999999999876444332221112222 34556677789999999999999877665444332111
Q ss_pred ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccE-----EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (268)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 184 (268)
.- .+..++.++.++.+..||..+++...+.... .... ..... . ++.+ ..+..++.+.-+|+++|+.+...
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~-~-~~~v-~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV-TPALTLRGSASPVI-A-DGGV-LVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE-E-CCEE-EEECCCCEEEEEEccCCCEeeee
Confidence 11 2446677788999999998876543332211 1000 01111 1 2333 44556689999999999876544
Q ss_pred cCCCC-----------E-EEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeE
Q 024372 185 ETKSP-----------V-TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV 252 (268)
Q Consensus 185 ~~~~~-----------v-~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i 252 (268)
....+ + ....+ .++.+++++.++.+..+|.++++.+........ ..... .+..++.++.|+.+
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeE
Confidence 32110 0 01111 245556667788999999998877655543221 11111 35667778899999
Q ss_pred EEEECCCCcEEe
Q 024372 253 HVFDFHTGEQIA 264 (268)
Q Consensus 253 ~~wd~~~g~~~~ 264 (268)
+.+|..+|+++-
T Consensus 292 ~~~d~~tG~~~W 303 (377)
T TIGR03300 292 VALDRRSGSELW 303 (377)
T ss_pred EEEECCCCcEEE
Confidence 999999998763
No 268
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.2e-08 Score=82.90 Aligned_cols=243 Identities=18% Similarity=0.202 Sum_probs=142.6
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEe
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD 89 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~ 89 (268)
.+++|...|.+++|+|. ..| +|..++.+.+|+|.|+++.-.+..+..| .++++|+|..|.. ++..|-..|.|.++|
T Consensus 188 ~lp~~g~~IrdlafSp~-~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPF-NEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred cccccchhhhhhccCcc-ccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 56789999999999983 223 7889999999999999999888888888 8999999998875 566777899999999
Q ss_pred CCCCCee-eeec---cCCeEEEEEE------CCCCCEEEEeeCCCeEEEEECCC--CCCCCeEecCCcccEEEEEEeCCC
Q 024372 90 ALTGDEK-HSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 90 ~~~~~~~-~~~~---~~~~v~~v~~------~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
+...... ..+. ...+|..++. .+.+.+++..+.+ ...|...- +..+........+....+++.+..
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~s 342 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVS 342 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCcc
Confidence 9754321 1111 1223333322 2234444444433 23454321 111111112223455556666655
Q ss_pred CcEEEEeeCCC------eEEE-EeCCCCceEEe----e-cCC----CCEEEEEECCCCcEEEE-e-CCCeEEEEeCCCce
Q 024372 158 QTILSSCTDSG------GVRL-WDARSGKIVQT----L-ETK----SPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG 219 (268)
Q Consensus 158 ~~~~~~~~~d~------~i~i-wd~~~~~~~~~----~-~~~----~~v~~~~~s~~g~~l~~-~-~~~~v~~wd~~~~~ 219 (268)
.+++++--.+. .+-. -|-+.|..+-. + ... ..-+.+--.++.++++. + +.+.+.+||...++
T Consensus 343 nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 343 NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE 422 (463)
T ss_pred ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence 66666643321 1111 12233332211 1 000 01122333456677765 3 34789999999999
Q ss_pred eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
.++++........++...-.+.-+...=.|..+++|..+
T Consensus 423 vvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 423 VVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred eeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence 999998886666555443334434444445557777643
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=9.1e-08 Score=75.41 Aligned_cols=206 Identities=12% Similarity=0.056 Sum_probs=132.9
Q ss_pred eEEEecCC--CCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEec-CCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372 21 DLFYSPIT--PDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEK 96 (268)
Q Consensus 21 ~~~f~~~~--~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~-~~~~~l~s~s~D~~v~iw~~~~~~~~ 96 (268)
.+.|-|.+ ..--+||.|+.-|...+|...+.+ ..+....|...|.-+.-- ....-+.-++.|+++++.++.-+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 56676633 222389999999999999988765 333334455444322111 11222445778999999988654433
Q ss_pred eeeccC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC-e-EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 97 HSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 97 ~~~~~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
...-.+ -.+.++.++++++++++.+....+..|.+....... . ......+.-.+..|+..+ ..+++++.||++-||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEE
Confidence 222111 237889999999999999999999999886543222 2 111222334566776544 567888899999999
Q ss_pred eCCCCce-EEee----c-CCCCEEEEEECCCCc--EEEEe-CCCeEEEEeCCCceeeeEEeCC
Q 024372 174 DARSGKI-VQTL----E-TKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKGYNMP 227 (268)
Q Consensus 174 d~~~~~~-~~~~----~-~~~~v~~~~~s~~g~--~l~~~-~~~~v~~wd~~~~~~~~~~~~~ 227 (268)
|+|.-.. +.+. + +.+.+..+.|+|.|. +|.-+ .-+.+.+-|+|+++..+..-.+
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 9987543 2222 2 346799999998773 34444 4478999999998766555443
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.08 E-value=8e-07 Score=75.79 Aligned_cols=193 Identities=19% Similarity=0.215 Sum_probs=126.3
Q ss_pred eeEEEecCCCCCcEEEEEeC-CCCeEEeeCCC-CCeEEE---ee----------CccCcEEEEEecCCCcEEEEee-CCC
Q 024372 20 VDLFYSPITPDGFFLVSASK-DSSPMLRNGET-GDWIGT---FE----------GHKGAVWSCCLDANALFSASGS-ADF 83 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~-d~~i~iw~~~~-~~~~~~---~~----------~h~~~V~~~~~~~~~~~l~s~s-~D~ 83 (268)
..++++ |+|.+|+++.. ++++.++++.. |++... +. .-......+.++|++++++... ...
T Consensus 90 ~~i~~~---~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 90 CHIAVD---PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp EEEEEC---TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred EEEEEe---cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 456666 58999998875 78889998876 443222 21 1124467899999998776543 345
Q ss_pred cEEEEeCCCCC--eee----eeccCCeEEEEEECCCCCEEEEe-eCCCeEEEEECCCCCCCC---eEecC----C--ccc
Q 024372 84 TAKLWDALTGD--EKH----SFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPP---REVGN----S--SGS 147 (268)
Q Consensus 84 ~v~iw~~~~~~--~~~----~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~~~~~~~~---~~~~~----~--~~~ 147 (268)
.|.+|++.... ... .+.....-+.+.|+|++++++.. -.++.|.++++....... +.... . ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 78998886654 222 23345567899999999988665 477889999886222111 11110 1 114
Q ss_pred EEEEEEeCCCCcEEEEeeCCCeEEEEeCC--CCc--eEEeecCC-CCEEEEEECCCCcEEEEe--CCCeEEEEeC
Q 024372 148 IRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLETK-SPVTSAEVSRDGRYITTA--DGSSVKFWDA 215 (268)
Q Consensus 148 v~~~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~--~~~~~~~~-~~v~~~~~s~~g~~l~~~--~~~~v~~wd~ 215 (268)
...+.++|++.+++++...++.|.+|++. +++ .+..+... .....++++|+|++|..+ .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 66788899999888888888999999983 343 33444432 337899999999998765 4678998876
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=6.8e-07 Score=75.39 Aligned_cols=218 Identities=14% Similarity=0.163 Sum_probs=128.4
Q ss_pred CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEe-e---------CCCcEEEEeCCCCCeeeeeccCCe------
Q 024372 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-S---------ADFTAKLWDALTGDEKHSFEHKHI------ 104 (268)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~-s---------~D~~v~iw~~~~~~~~~~~~~~~~------ 104 (268)
+++.+.|..+++.+.++..-..+-. + ++||++.++.+ + ++..|.+||..+.+....+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999998874333332 3 89999877544 4 578999999999999888764322
Q ss_pred --EEEEEECCCCCEEEEee-C-CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC-CCc
Q 024372 105 --VRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK 179 (268)
Q Consensus 105 --v~~v~~~~~~~~l~s~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~ 179 (268)
-...+++|||++++... . ++.+.+.|+.+.+.. .++.-..+. .-.. .+++.+ ++-|.| |......+. +|+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv-~ei~vp~~~-~vy~-t~e~~~-~~~~~D-g~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV-RMMDVPDCY-HIFP-TANDTF-FMHCRD-GSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE-EEEeCCCCc-EEEE-ecCCcc-EEEeec-CceEEEEecCCCc
Confidence 23678999999998766 3 688999999865432 222221111 1111 112222 222332 433333222 122
Q ss_pred e-EEe---ecC-CCCE-EEEEECC-CCcEEEEeCCCeEEEEeCCC-----ceeeeEEeC--------CCCceeeEEcCCC
Q 024372 180 I-VQT---LET-KSPV-TSAEVSR-DGRYITTADGSSVKFWDANH-----FGLVKGYNM--------PCNTESASLEPKL 239 (268)
Q Consensus 180 ~-~~~---~~~-~~~v-~~~~~s~-~g~~l~~~~~~~v~~wd~~~-----~~~~~~~~~--------~~~~~~~~~~~~~ 239 (268)
. ... +.. ..++ ..-.+++ +|+++..+..+.|.+-|+.. ......+.. +.....+.++++.
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 1 111 111 0000 0013455 88888766669999999533 222222221 2234457777765
Q ss_pred CCEEEec---------cCCCeEEEEECCCCcEEee
Q 024372 240 GNIFIAG---------GEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 240 ~~~~~~g---------s~d~~i~~wd~~~g~~~~~ 265 (268)
+++|+.. .....|-++|.++++.+..
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~ 294 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK 294 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence 6666643 1225799999999998764
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=7.7e-09 Score=91.44 Aligned_cols=211 Identities=17% Similarity=0.280 Sum_probs=141.2
Q ss_pred CCcceeeecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC--cEEEEEecCCC--cEE
Q 024372 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANA--LFS 76 (268)
Q Consensus 1 ~~~~~~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~--~V~~~~~~~~~--~~l 76 (268)
+|-+++.+-+.+. -.+++.++..+| -|.-+|.|++-|-..+--...+...+-+. |.. .|-.+.|++.. .+-
T Consensus 10 yns~tf~kslsl~-v~~~~~a~si~p---~grdi~lAsr~gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~w 84 (1081)
T KOG0309|consen 10 YNSPTFGKSLSLK-VDGGFNAVSINP---SGRDIVLASRQGLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYW 84 (1081)
T ss_pred CCCCccCceeEEE-ecCcccceeecc---ccchhhhhhhcCeEEEeccCCCCCceeee-ccCcchhcceecccCCCCcee
Confidence 3556666777665 356788888875 67778889888876654333343332232 322 35566676543 333
Q ss_pred EEeeCCCcEEEEeCCCCC--eee--eeccCCeEEEEEECCC-CCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE
Q 024372 77 ASGSADFTAKLWDALTGD--EKH--SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151 (268)
Q Consensus 77 ~s~s~D~~v~iw~~~~~~--~~~--~~~~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 151 (268)
+..-..+...+|++.... .+. ...|...|+.+-|+|+ ..++++++-|-.+..||++++.........-...-..+
T Consensus 85 iVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 85 IVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred EEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence 333334556688874322 222 2246778999999994 56899999999999999998776554443323345678
Q ss_pred EEeCCCCcEEEEeeCCCeEEEEeCCCCc-eEEeecCC-CCEEEEEECCC--CcEEEEeCCCeEEEEeCCC
Q 024372 152 AWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLETK-SPVTSAEVSRD--GRYITTADGSSVKFWDANH 217 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~-~~v~~~~~s~~--g~~l~~~~~~~v~~wd~~~ 217 (268)
.|+-.+++++++.-. +-|++||+|.|. ++..++.+ ..++.++|..- +..+.++.|++|++||..+
T Consensus 165 kwnyk~p~vlasshg-~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHG-NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccCcchhhhccC-CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 999888888877654 789999999875 45666654 34778888753 4566677899999999753
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=3.5e-07 Score=88.14 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=126.2
Q ss_pred eeeEEEecCCCCCcEEEE-EeCCCCeEEeeCCCCCeEEEeeCc-----------------cCcEEEEEecC-CCcEEEEe
Q 024372 19 VVDLFYSPITPDGFFLVS-ASKDSSPMLRNGETGDWIGTFEGH-----------------KGAVWSCCLDA-NALFSASG 79 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s-~s~d~~i~iw~~~~~~~~~~~~~h-----------------~~~V~~~~~~~-~~~~l~s~ 79 (268)
-.++++.+ +++.|.. -+..+.|+++|..++. +.++.+- -..-..++++| ++.++++.
T Consensus 626 P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNA---KKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CcEEEEeC---CCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 45788874 5655544 4455678888887664 4344220 01224688998 56667888
Q ss_pred eCCCcEEEEeCCCCCeeeeecc---------------CCeEEEEEECCCCC-EEEEeeCCCeEEEEECCCCCCCCe----
Q 024372 80 SADFTAKLWDALTGDEKHSFEH---------------KHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR---- 139 (268)
Q Consensus 80 s~D~~v~iw~~~~~~~~~~~~~---------------~~~v~~v~~~~~~~-~l~s~~~d~~i~~~d~~~~~~~~~---- 139 (268)
+.++.|++||..++........ -.....++++|+++ ++++-..++.|++||+.++.....
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 8899999999877654321110 11245688999988 555666779999999875431100
Q ss_pred --------EecCCc--------ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--------------CCC
Q 024372 140 --------EVGNSS--------GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------------KSP 189 (268)
Q Consensus 140 --------~~~~~~--------~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------------~~~ 189 (268)
.++... ..-..+++.+++. ++++...++.|++||..++........ -..
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 000000 1124677777664 666667779999999988776543221 024
Q ss_pred EEEEEECCCCcEEEEe-CCCeEEEEeCCCcee
Q 024372 190 VTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220 (268)
Q Consensus 190 v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~ 220 (268)
...++++++|+++++. .++.|++||+.+.+.
T Consensus 861 P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 6789999999877664 578999999987654
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=7.3e-09 Score=85.48 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=100.3
Q ss_pred EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCCcE--EEEeeCCCeEEEEeCCCCceEEe
Q 024372 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTI--LSSCTDSGGVRLWDARSGKIVQT 183 (268)
Q Consensus 108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~ 183 (268)
+..++.++++|.+..++...+++........+... ...-.-+.+.+..+.... +-..++...+.+|....+.+...
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 44577788888887777766676643221011100 000011223333333332 22344556777887777777777
Q ss_pred ecCCCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeC-CCCcee-eEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 184 LETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNM-PCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 184 ~~~~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+.|-.-+..++++||++++++++ |..||+-..-.-..+..|.. +....+ ++.. +++.|++||.|+++++||..+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEecccC
Confidence 77767789999999999988875 78999866655455666655 333332 3332 4778999999999999999999
Q ss_pred cEEeec
Q 024372 261 EQIAIT 266 (268)
Q Consensus 261 ~~~~~~ 266 (268)
+.++..
T Consensus 226 k~L~t~ 231 (390)
T KOG3914|consen 226 KLLDTC 231 (390)
T ss_pred Cccccc
Confidence 988653
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.03 E-value=4.6e-08 Score=79.48 Aligned_cols=196 Identities=13% Similarity=0.244 Sum_probs=121.4
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC----CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~----~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.-..++++++|.+ +-..|..|-..|++.-+.. ++...++....|...|..+-|+.....+++.+.|+.+. |.
T Consensus 66 ~mP~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~h 141 (404)
T KOG1409|consen 66 YMPSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WH 141 (404)
T ss_pred hCCCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EE
Confidence 4456888999986 5568999999999876643 33445666778999999999998888889999986554 44
Q ss_pred C-CCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 90 A-LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 90 ~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
. +.+.....+.......+..+.-. +...|...+.+.+--+.... .+...+..|.+++.++.|.+.+. ++.+|..|
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d 218 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASD 218 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEecccc
Confidence 3 33322221111111011111101 33344444555444332111 23345667889999999987665 45566677
Q ss_pred CeEEEEeCCC--CceEEeecCCCCEEEEEECCCCcE-EEEeCCCeEEEEeCC
Q 024372 168 GGVRLWDARS--GKIVQTLETKSPVTSAEVSRDGRY-ITTADGSSVKFWDAN 216 (268)
Q Consensus 168 ~~i~iwd~~~--~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~v~~wd~~ 216 (268)
..+.+||+-- +.....+.+...|..+...+--+. ++++.|+.|.+||..
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9999999854 333333334455665555555444 456788999999974
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.8e-07 Score=80.50 Aligned_cols=193 Identities=20% Similarity=0.231 Sum_probs=128.1
Q ss_pred cCCCeeeEEEecCCCCCcEEEEE-----eCCCCeEEeeCCCCCe------EEEeeCccCcEEEEEecCCCc-E--EEEee
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSA-----SKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANAL-F--SASGS 80 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~-----s~d~~i~iw~~~~~~~------~~~~~~h~~~V~~~~~~~~~~-~--l~s~s 80 (268)
|...|+.++++|- |.-..+|+- +.-..++||....... ...|+ .+.| ...|.+.+. + |++.-
T Consensus 164 ~~~~i~~f~lSpg-p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkv-qm~WN~~gt~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPG-PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKV-QMKWNKLGTALLVLASTD 239 (566)
T ss_pred eccceeeEEecCC-CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--ccee-EEEeccCCceEEEEEEEe
Confidence 6778888999873 223345442 5666788886542211 11111 1222 344555443 2 23333
Q ss_pred CCC---------cEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE--eeCCCeEEEEECCCCCCCCeEecCCcccEE
Q 024372 81 ADF---------TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--GGFEKILRIFDLNRPDAPPREVGNSSGSIR 149 (268)
Q Consensus 81 ~D~---------~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s--~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~ 149 (268)
-|+ ++++.++....+.-.+....+|.++.|+|+++-++. |-.=..+.+||++.. . .+....++-+
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~--v~df~egpRN 315 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--P--VFDFPEGPRN 315 (566)
T ss_pred ecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--E--eEeCCCCCcc
Confidence 343 577777775556666667889999999999976665 344567889998642 1 2223467888
Q ss_pred EEEEeCCCCcEEEEeeCC--CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCC
Q 024372 150 TVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDAN 216 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~ 216 (268)
++-|+|.+..++++|.+. |.|-+||+.+.+++..+.... ..-+.|+|||.++.++. |..++||+..
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999888778777654 689999999988888877543 34679999999986542 7789999974
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=1.2e-09 Score=61.78 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=36.9
Q ss_pred CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
|+++.++.+|++.|.+++|+|++.+++|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 278
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=2.8e-10 Score=102.18 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=139.2
Q ss_pred EEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-CCC-cEEE
Q 024372 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-ADF-TAKL 87 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~-~v~i 87 (268)
..++.|+...++++|+. +-+.|+.|+-.|.|+++++.+|.-....++|..+|.-+.-+.+|..+++.+ +.. ...+
T Consensus 1095 ~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 45678999999999984 667999999999999999999988889999999999998888887765544 333 5678
Q ss_pred EeCCC-CCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEE
Q 024372 88 WDALT-GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSS 163 (268)
Q Consensus 88 w~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 163 (268)
|++.. +..+++|. .-.++.|+...+.-+.|+-.....+||+.+.......+. ..+-.-++..|+|.+..++
T Consensus 1172 W~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred hccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 99853 44444443 234566766443333444445678999887654333222 1222346677888776443
Q ss_pred eeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372 164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (268)
Q Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~ 224 (268)
.||- +||+|..+.++.|..-..-..=.|+|+|.-++.-+ .|||+++++.++..
T Consensus 1247 --ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 --NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred --eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 3453 69999998888876543333456899998876532 58999998876544
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=2e-07 Score=75.83 Aligned_cols=236 Identities=15% Similarity=0.092 Sum_probs=150.9
Q ss_pred eecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee-CCCCCeEEEee-CccCcEEEEEecCCCcEEEEeeCCCcEEEEeC
Q 024372 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN-GETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~-~~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~ 90 (268)
.||.+.|++...-|..+ -+++.+.|.++|||- ...+++-..+. .-..++.++++.++..+|+.|=..|++.-+.+
T Consensus 21 eG~~d~vn~~~l~~~e~---gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEE---GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred cCchhhhhhheeccCCC---CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 48999999888877544 489999999999994 34455443443 12457888899999999988888899888876
Q ss_pred CCCC-----eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCc---EEE
Q 024372 91 LTGD-----EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT---ILS 162 (268)
Q Consensus 91 ~~~~-----~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~ 162 (268)
...- .+....|..++..+-|+....++++.+.|+.+..--.+.+...-.. ...+.....+. +.-
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y--------~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY--------NFETPASALQFDALYAF 169 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce--------EeeccCCCCceeeEEEE
Confidence 4322 2223358889999999999999999999988754333332211111 00111000111 111
Q ss_pred EeeCCCeEEEEeC--CCCceEEeecC-CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCc--eeeeEEeCCCCceeeEEc
Q 024372 163 SCTDSGGVRLWDA--RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF--GLVKGYNMPCNTESASLE 236 (268)
Q Consensus 163 ~~~~d~~i~iwd~--~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~--~~~~~~~~~~~~~~~~~~ 236 (268)
.|...|.|.+-.+ ..-..+.++.. ...+.+++|.|..+.+.++ .|..+.+||+.-. .....+....+...+...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 2222244433322 33445666654 4569999999988777664 6889999998543 222233333334444433
Q ss_pred CCCCCEEEeccCCCeEEEEECCCC
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+ --+.++++++|+.|-+||++..
T Consensus 250 ~-~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 Q-HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred h-hheeeeeccCCCeEEEEeccce
Confidence 3 4678999999999999998643
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.99 E-value=8.1e-09 Score=80.85 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=93.0
Q ss_pred CcEEEEEeCCCCeEEeeCCCCC-eEEEeeC-ccCcEEEEEecCCCcEEEEeeC-----CCcEEEEeCCCCCeeeee-ccC
Q 024372 31 GFFLVSASKDSSPMLRNGETGD-WIGTFEG-HKGAVWSCCLDANALFSASGSA-----DFTAKLWDALTGDEKHSF-EHK 102 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~-----D~~v~iw~~~~~~~~~~~-~~~ 102 (268)
++.++++..|+.+.+.+.+.-. ..+.+.. |.+. .+.++-..+.++.++.. -+..+.|++........- ...
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 5678999999999998876521 1111111 1111 11222233444444321 123444554322211110 122
Q ss_pred CeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372 103 HIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 103 ~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
..|.+++-+| +.+++++|+.||.+.+||.+....+.....-|+.++..+-|.|.++.-+.+++.||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3488888899 56688889999999999998766555666678899999999998887677888999999999875
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4e-09 Score=85.56 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=113.8
Q ss_pred EEEEecCC--CcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC----CCCC
Q 024372 65 WSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP----DAPP 138 (268)
Q Consensus 65 ~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~----~~~~ 138 (268)
+.|+|+-+ +.+ ++.+.+..+-+-|++++... .+..+.-|.++.|...++++..|+.+|.|..+|++.. ....
T Consensus 215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhhccceee-ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 34455532 333 56677888888888877553 3346667888999998999999999999999999865 2222
Q ss_pred eEecCCcccEEEEEEeC-CCCcEEEEeeCCCeEEEEeCCCCce---EEeecCCCC---EEEEEECCCCcEE-EEeCCCeE
Q 024372 139 REVGNSSGSIRTVAWLH-SDQTILSSCTDSGGVRLWDARSGKI---VQTLETKSP---VTSAEVSRDGRYI-TTADGSSV 210 (268)
Q Consensus 139 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~---v~~~~~s~~g~~l-~~~~~~~v 210 (268)
+.+ -|...++++.... +++.++++ +-+|+|++||+|.-++ +.++++|.. -.-+-+.+...++ +.++|-..
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS-~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMAS-DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeec-cCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 333 3567888888776 56666655 5669999999998877 788876632 2233445555555 45678889
Q ss_pred EEEeCCCceeeeEEeCCC
Q 024372 211 KFWDANHFGLVKGYNMPC 228 (268)
Q Consensus 211 ~~wd~~~~~~~~~~~~~~ 228 (268)
|||.++.+.++.+...+.
T Consensus 371 RiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEecccCceeeccCCCC
Confidence 999999998888777653
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.7e-06 Score=74.27 Aligned_cols=191 Identities=15% Similarity=-0.005 Sum_probs=114.7
Q ss_pred CeeeEEEecCCCCCcE-EEEEeCC---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEE-EeeCC--CcEEEEeC
Q 024372 18 PVVDLFYSPITPDGFF-LVSASKD---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD--FTAKLWDA 90 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~-l~s~s~d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~s~D--~~v~iw~~ 90 (268)
....-.|+ |||+. ++-.+.. ..|.++|..+|+...-. ...+.+....|+||++.++ +.+.+ ..|.++++
T Consensus 189 ~~~~p~wS---pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWA---NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEEC---CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 56677787 48885 6655554 34556688888654332 2455566678999997654 44434 45777788
Q ss_pred CCCCeeeeeccCCeEEEEEECCCCCEEEEeeC-CC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 91 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
.++.......+......-.|+|||+.++-.+. .+ .|.+.|+..++. +..... +.. ...|+|++..++.+....
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~-g~~-~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH-GKN-NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccC-CCc-CceECCCCCEEEEEEcCC
Confidence 77765443233322334579999987776553 23 566667765432 122111 111 247899998877666543
Q ss_pred --------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e-CC--CeEEEEeCCC
Q 024372 168 --------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DG--SSVKFWDANH 217 (268)
Q Consensus 168 --------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~-~~--~~v~~wd~~~ 217 (268)
..|.+.|+.+++...... ........|+|||++++- . .+ ..+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888998887543322 223335789999997753 2 22 2355666644
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=82.97 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=110.5
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-----CeeeeeccCCe
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEKHSFEHKHI 104 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-----~~~~~~~~~~~ 104 (268)
-|.. ++.+.+..+-+-++++|-.. .|. .++.|.++.|...+.++..|.+.|.|...|+... .+...+.|...
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss 300 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS 300 (425)
T ss_pred ceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence 3444 67778888888898887432 343 5678999999887888889999999999999754 46777889999
Q ss_pred EEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCC--CeEecCCcccEEEEEE-----eCCCCcEEEEeeCCCeEEEEeCC
Q 024372 105 VRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAW-----LHSDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 105 v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~iwd~~ 176 (268)
|+++..-. +++.|++.+.+|+|++||++.-+.. .+...+| ++..++ .++.+.+++ +++|...|||.++
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s-~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWSLD 376 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEE-ccCeeEEEEEecc
Confidence 99887655 6788999999999999999754331 2222222 333232 344455555 6678999999999
Q ss_pred CCceEEeecCC
Q 024372 177 SGKIVQTLETK 187 (268)
Q Consensus 177 ~~~~~~~~~~~ 187 (268)
.|..+.+++..
T Consensus 377 ~ghLl~tipf~ 387 (425)
T KOG2695|consen 377 SGHLLCTIPFP 387 (425)
T ss_pred cCceeeccCCC
Confidence 99998887643
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.9e-07 Score=82.40 Aligned_cols=182 Identities=18% Similarity=0.266 Sum_probs=129.5
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
...+.+++++ +..|+-|+.+|.+.+.+.. |.. .+.-.|+.. ..+|.+++|||.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3456666664 4689999999999988754 322 333345444 56799999999999999999999999
Q ss_pred eeeeccCCeEEEEEECCC-----CCEEEEeeCCCeEEEEECCC-CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 96 KHSFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 96 ~~~~~~~~~v~~v~~~~~-----~~~l~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
...+..+.++.+++++|+ .+.+++|+..| +.++.=+= +.........-.|+|.++.|. +++++=.++ -.
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand-~G 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWAND-DG 180 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecC-CC
Confidence 898888999999999997 57889999888 66664110 011111233456899999995 346665555 46
Q ss_pred EEEEeCCCCceEEeecCCC-------CEEEEEECCCCcEEEEeCCCeEEEEeCC
Q 024372 170 VRLWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTADGSSVKFWDAN 216 (268)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~-------~v~~~~~s~~g~~l~~~~~~~v~~wd~~ 216 (268)
|+++|+.+++.+..++... ....+.|.++.+++ .|-+.+|++..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IGWGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-EecCCeEEEEEEe
Confidence 9999999988877665321 23467777776655 5555588888876
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=2.3e-08 Score=88.55 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=128.7
Q ss_pred ecEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 8 ~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
.-++++||+..|+++.|+|..|| .||+++.|..+..||.++.. .+..+..-......|.|+.....+...+....|+
T Consensus 106 Ief~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred eEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 34678999999999999998887 89999999999999998864 4555544334456788886555445556778899
Q ss_pred EEeCCCCC-eeeee-ccCCeEEEEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-----
Q 024372 87 LWDALTGD-EKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ----- 158 (268)
Q Consensus 87 iw~~~~~~-~~~~~-~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 158 (268)
+||..-+. ++..+ .|-..|+.+.|+. --..+.+.+.|++++.||................++..-.+.|-+.
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 99987554 33333 2555677777765 2345678899999999997643222211111223333333333221
Q ss_pred -----cEEEEeeCCCeEEEEeCCCC-ceEEeecCCCC-EEEEEE--------CC---CCcEEEEeCCCeEEEEeCC
Q 024372 159 -----TILSSCTDSGGVRLWDARSG-KIVQTLETKSP-VTSAEV--------SR---DGRYITTADGSSVKFWDAN 216 (268)
Q Consensus 159 -----~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-v~~~~~--------s~---~g~~l~~~~~~~v~~wd~~ 216 (268)
+++---.-++....|+..++ +.+++|.+|.. |....| .. +-.++.=+-|.++|+|.+.
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 11111111234455666543 67888876643 322222 22 2233444788999999874
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=3.2e-05 Score=62.69 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=137.4
Q ss_pred eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEec-CCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSF 99 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (268)
+..|.| .+|.++.+-...+.|.-|+..+++.. .+.... ...+.+. +++.++++. .+ .+.++|..+++.....
T Consensus 4 gp~~d~--~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDP--RDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEET--TTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEE
T ss_pred ceEEEC--CCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEe
Confidence 356664 26778888888889999999887643 232222 5566676 676665554 33 4455598887654443
Q ss_pred cc------CCeEEEEEECCCCCEEEEeeCC--------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 100 EH------KHIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 100 ~~------~~~v~~v~~~~~~~~l~s~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
.. ....+.+++.++|++.++.... +.+..++.. ++ ...........+.++|+|++..++++-+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeeccc
Confidence 32 2357789999999977765433 446666654 22 2222222345678999999988877777
Q ss_pred CCCeEEEEeCCCC-c-e-----EEeecCC-CCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCC-CCceeeEE
Q 024372 166 DSGGVRLWDARSG-K-I-----VQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASL 235 (268)
Q Consensus 166 ~d~~i~iwd~~~~-~-~-----~~~~~~~-~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~-~~~~~~~~ 235 (268)
..+.|..+|+... . . +..+... ...-.+++.++|++.++. ..+.|.++|.+ ++.+..+..+ ..+..++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7789999998532 2 1 1222222 237789999999987764 57899999988 7778888877 45666676
Q ss_pred c-CCCCCEEEecc
Q 024372 236 E-PKLGNIFIAGG 247 (268)
Q Consensus 236 ~-~~~~~~~~~gs 247 (268)
- ++.+.+|+|.+
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 33456666643
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=8.4e-06 Score=71.18 Aligned_cols=191 Identities=13% Similarity=0.047 Sum_probs=117.2
Q ss_pred cEEEEEecCCCcE-EEEeeC---CCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCC--CeEEEEECCCCC
Q 024372 63 AVWSCCLDANALF-SASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFE--KILRIFDLNRPD 135 (268)
Q Consensus 63 ~V~~~~~~~~~~~-l~s~s~---D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d--~~i~~~d~~~~~ 135 (268)
.+..-.|+|+++. ++..+. +..|.++|+.+++.......+.......|+||++.++. .+.+ ..|.++|+..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6778899999974 553332 45788889988877665555555666789999986654 3333 467777876543
Q ss_pred CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eC-C----
Q 024372 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-G---- 207 (268)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~-~---- 207 (268)
.+.+....+....-.|+|++..++.++...+ .|.+.|+.+++..+.... ... ...|+|||++++- +. .
T Consensus 269 --~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 --LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred --EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-CceECCCCCEEEEEEcCCCccc
Confidence 2333333322334579999988766654433 688889988876443322 112 2489999998763 32 1
Q ss_pred ----CeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccC---CCeEEEEECCC
Q 024372 208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHT 259 (268)
Q Consensus 208 ----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~---d~~i~~wd~~~ 259 (268)
..|.+.|+...... .+..........++| +|++++-.+. ...+.+.++.-
T Consensus 345 ~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSS-DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECC-CCCEEEEEEccCCcEEEEEEecCC
Confidence 25777888765432 222222233567777 5776664432 22477777753
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-07 Score=78.87 Aligned_cols=204 Identities=20% Similarity=0.192 Sum_probs=136.5
Q ss_pred ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee----eeccCCeEEEEEECCCCCEEEEeeC-CCeEEEEECCCC
Q 024372 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRP 134 (268)
Q Consensus 60 h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~s~~~-d~~i~~~d~~~~ 134 (268)
|.+.|.-|..+ ...++.+++.||.++.|.-..-..+. ...|...+.+++.+.++.++.|++. |..+|++|++..
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66766655433 45788999999999999865433222 2246667788888889999999887 999999998754
Q ss_pred CCCCeE-ecCCcccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCce-EEeec--CCCCEEEEEECCCCcEEEEeC-C
Q 024372 135 DAPPRE-VGNSSGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKI-VQTLE--TKSPVTSAEVSRDGRYITTAD-G 207 (268)
Q Consensus 135 ~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~s~~g~~l~~~~-~ 207 (268)
....-. ..-..+.+.. ..++.+. .+.++..+++.+.++|-+..-| ...+. +..+|..+.+.|-+.-+++.+ +
T Consensus 87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 322111 1111111111 1223221 4566667779999999876553 22222 457899999999998877765 6
Q ss_pred CeEEEEeCCC-ce-----eeeEE-------e---CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 208 SSVKFWDANH-FG-----LVKGY-------N---MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 208 ~~v~~wd~~~-~~-----~~~~~-------~---~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
|.|..|.... +. ..-.+ . .+..+.++.+++ ++..+.+-+.|..|+++++++|+.+.+.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhh
Confidence 8999998862 11 11111 1 123345667777 6888999889999999999999987764
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.77 E-value=2.6e-06 Score=72.38 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=123.8
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC-cEEEEeCCCCCeeeeeccCCeEEEE
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRAC 108 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~~~~~~~~~~v~~v 108 (268)
+|.+++..|+.+. .|.+...+-.+. -+|.+.|+-..+..++.-++-|-.|| .+-++|..+++..+....-..|..+
T Consensus 331 ~Gd~ia~VSRGka-Fi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSRGKA-FIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEecCcE-EEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 6889998888654 444444443332 25778888888877777778888898 8999999998877777677789999
Q ss_pred EECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC----eEEEEeCCCCceEEee
Q 024372 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIVQTL 184 (268)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~----~i~iwd~~~~~~~~~~ 184 (268)
..+++|+.++.+....++-+.|+.++...... ....+.|+.+.|+|+..++ +-+..+| .|+++|...++.....
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999999988888888899876543222 2345678999999877654 4444444 6999999988876654
Q ss_pred cCCCCEEEEEECCCCcEE
Q 024372 185 ETKSPVTSAEVSRDGRYI 202 (268)
Q Consensus 185 ~~~~~v~~~~~s~~g~~l 202 (268)
...+-=.+-+|.|++++|
T Consensus 486 T~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred CCcccccCcccCCCCcEE
Confidence 433333456788999876
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.6e-06 Score=76.33 Aligned_cols=235 Identities=14% Similarity=0.033 Sum_probs=158.6
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC------------CcEEEEeeCCCcE
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTA 85 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~------------~~~l~s~s~D~~v 85 (268)
.-.+++|+| .| ++|=|+ ...|.+-|..+.+++..++.|+..|..+.|.|- ..++|++...|.|
T Consensus 17 N~~A~Dw~~---~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 17 NRNAADWSP---SG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccCc---cc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 366888884 55 555444 455678899999999999999999999998753 1356778788999
Q ss_pred EEEeCCCCCeeeeec-cCCeEEEEEECC---CC-CEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC-c
Q 024372 86 KLWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-T 159 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~-~~~~v~~v~~~~---~~-~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 159 (268)
.+||...+..+..++ +.+++..++|-+ +. .+|++-.....+.+|+..+++........+ ....|+.+.|-+. +
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcce
Confidence 999998887777776 456788888755 33 567776777899999988776544443333 2456677766443 4
Q ss_pred EEEEeeCCCeEEEEeCC-C------CceEEeecCCC------------------C--------EEEEEECCCCcE-EEEe
Q 024372 160 ILSSCTDSGGVRLWDAR-S------GKIVQTLETKS------------------P--------VTSAEVSRDGRY-ITTA 205 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~-~------~~~~~~~~~~~------------------~--------v~~~~~s~~g~~-l~~~ 205 (268)
+...++. |.+.+-+.- . ++.++.-..+. + ....+|+|.-+- +...
T Consensus 171 ~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 171 FCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred EEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 5555554 777776542 1 23333221110 0 123456787644 4456
Q ss_pred CCCeEEEEeCCCceeeeEEeCCCCce-eeEEcCC-CCCEEEeccCCCeEEEEECCC
Q 024372 206 DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK-LGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 206 ~~~~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~gs~d~~i~~wd~~~ 259 (268)
-.+.+.++|++...++....++.+.. -+.+.|+ ..+.+.+.=.||.+-+|--+.
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 67899999999888888887766532 2333443 356788888999999997654
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=3.2e-05 Score=63.67 Aligned_cols=217 Identities=12% Similarity=0.152 Sum_probs=136.1
Q ss_pred CCCeEEeeCCC--CCeE-EEeeCccCcEEEEEecCCCcEEEEeeCC---CcEEEEeCCCC--Ceeeee---ccCCeEEEE
Q 024372 40 DSSPMLRNGET--GDWI-GTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTG--DEKHSF---EHKHIVRAC 108 (268)
Q Consensus 40 d~~i~iw~~~~--~~~~-~~~~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~--~~~~~~---~~~~~v~~v 108 (268)
++-|.+|++.+ |++. -.+-.+.+...-++++|++++|.++..+ +.|-.+.+... .....- ....+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56788887663 4321 1223456677788999999998887654 66776666543 321111 123344678
Q ss_pred EECCCCCEEEEeeCC-CeEEEEECCC-CCCCCe-EecCCccc----------EEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 109 AFSEDTHLLLTGGFE-KILRIFDLNR-PDAPPR-EVGNSSGS----------IRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 109 ~~~~~~~~l~s~~~d-~~i~~~d~~~-~~~~~~-~~~~~~~~----------v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
++++++++|+++.+. +.|.++-++. +..... ....|.+. +....+.|++..+++..-.-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999999998754 7788887754 221111 11122333 6667778888777766544468999999
Q ss_pred CCCceEE----eecCCCCEEEEEECCCCcEEE--EeCCCeEEEEeCCCc----eeeeEEeC-C------CCceeeEEcCC
Q 024372 176 RSGKIVQ----TLETKSPVTSAEVSRDGRYIT--TADGSSVKFWDANHF----GLVKGYNM-P------CNTESASLEPK 238 (268)
Q Consensus 176 ~~~~~~~----~~~~~~~v~~~~~s~~g~~l~--~~~~~~v~~wd~~~~----~~~~~~~~-~------~~~~~~~~~~~ 238 (268)
..|.... .++......-+.|+|+++++- ..=+++|.+|..... +.++.+.. + .....+.+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 8765432 234455678999999999764 334789999987652 33443321 2 2223455566
Q ss_pred CCCEEEecc--CCCeEEEEECC
Q 024372 239 LGNIFIAGG--EDMWVHVFDFH 258 (268)
Q Consensus 239 ~~~~~~~gs--~d~~i~~wd~~ 258 (268)
+|++|+++- .| .|-+|.+.
T Consensus 254 dGrFLYasNRg~d-sI~~f~V~ 274 (346)
T COG2706 254 DGRFLYASNRGHD-SIAVFSVD 274 (346)
T ss_pred CCCEEEEecCCCC-eEEEEEEc
Confidence 699888763 34 57777764
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=6.6e-06 Score=67.42 Aligned_cols=182 Identities=19% Similarity=0.259 Sum_probs=120.9
Q ss_pred eEEEecCCCCCcEEEEEeC-----CCCeEEeeCC-CCCeEEEeeCccCcEEEEEecCCCcEEEEe--eC-----CCcEEE
Q 024372 21 DLFYSPITPDGFFLVSASK-----DSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG--SA-----DFTAKL 87 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~-----d~~i~iw~~~-~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~--s~-----D~~v~i 87 (268)
--.|+ +||++|.+.-+ .|.|-|||.. ..+.+.+|..|.=.=..+.+.||+..|+-+ +- .|..++
T Consensus 55 Hg~fs---~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 55 HGVFS---PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred CEEEc---CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 35676 59999998844 4577899998 667888998775555667789999655433 21 133333
Q ss_pred -----------EeCCCCCeeeeec-----cCCeEEEEEECCCCCEEEEeeCCCe-------EEEEECCCCCCCCeEe---
Q 024372 88 -----------WDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPDAPPREV--- 141 (268)
Q Consensus 88 -----------w~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~-------i~~~d~~~~~~~~~~~--- 141 (268)
-|..++..+.... |+..++.+++.++|..++..-+.+. +-++.... . .+..
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p 208 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAP 208 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCC
Confidence 3344455444321 4557999999999987776655544 22232211 0 1111
Q ss_pred ----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeE
Q 024372 142 ----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV 210 (268)
Q Consensus 142 ----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v 210 (268)
..-.+.+-+|+++.++..+++++-..+.+.+||..+++.+..... ..+..++..+++ |++++..+.+
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCccE
Confidence 123467889999998888888888888999999999998886654 346677888888 6666554443
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=2.4e-05 Score=62.64 Aligned_cols=221 Identities=13% Similarity=0.121 Sum_probs=124.1
Q ss_pred CCCCcEEEEEeCCCCeEEeeCCCC--CeEEEeeCcc---CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec--
Q 024372 28 TPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHK---GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-- 100 (268)
Q Consensus 28 ~~dg~~l~s~s~d~~i~iw~~~~~--~~~~~~~~h~---~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-- 100 (268)
+++|+.|| .-.|..|.|...++. ..+++..-++ .+=+.++|+||+.+||.+...|+|+++|+..... ..++
T Consensus 6 ~~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~ 83 (282)
T PF15492_consen 6 SSDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPA 83 (282)
T ss_pred cCCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcc
Confidence 35887665 678888888766653 2334333333 3468899999999999999999999999976443 2222
Q ss_pred ------cCCeEEEEEECCC------CCEEEEeeCCCeEEEEECCCCC----CCCeEe---cCCcccEEEEEEeCCCCcEE
Q 024372 101 ------HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPD----APPREV---GNSSGSIRTVAWLHSDQTIL 161 (268)
Q Consensus 101 ------~~~~v~~v~~~~~------~~~l~s~~~d~~i~~~d~~~~~----~~~~~~---~~~~~~v~~~~~~~~~~~~~ 161 (268)
....|-.+.|-+. ...|+.-.++|.++-|-+..+. .....+ .+....|.++.|.|....++
T Consensus 84 ~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 84 MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE
Confidence 1234555555331 2346666788888877652211 111111 12345789999998887777
Q ss_pred EEeeCCCeEEEEeCCC-CceEEeecCCCCEEEEEECCCCcEEEEeCCC------eEEEEeCCCceeeeE-EeCCCCceee
Q 024372 162 SSCTDSGGVRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYITTADGS------SVKFWDANHFGLVKG-YNMPCNTESA 233 (268)
Q Consensus 162 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~v~~wd~~~~~~~~~-~~~~~~~~~~ 233 (268)
++|.....-..+-... |- ....-+.-.|..+.+.+.+++ +-.+|.+-+.+.... .+....+...
T Consensus 164 VgG~~~~~~~~s~a~~~GL--------taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 164 VGGCEQNQDGMSKASSCGL--------TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred EeccCCCCCccccccccCc--------eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 7766544211111100 10 001111123333333332221 123343332211111 1112345566
Q ss_pred EEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 234 SLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
.++| +|..||+...+|.|.+|++-+
T Consensus 236 SlSP-dg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 236 SLSP-DGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred EECC-CCCEEEEEEcCCeEEEEecCc
Confidence 7777 699999999999999999854
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=8.5e-06 Score=77.51 Aligned_cols=233 Identities=12% Similarity=0.196 Sum_probs=146.2
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEe----eCCCC--CeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw----~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.+.|.++.|-+ +...|..+..+|.|.+. +..+. |.++.+ ...|.+.+|+||+..++-...++++.+-.
T Consensus 75 ~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 75 NDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 45788899975 67789999999999988 54443 445554 46899999999999988777777777654
Q ss_pred CC----C---------C----------Ceeeee-------------------------ccCCeEEEEEECCCCCEEEEee
Q 024372 90 AL----T---------G----------DEKHSF-------------------------EHKHIVRACAFSEDTHLLLTGG 121 (268)
Q Consensus 90 ~~----~---------~----------~~~~~~-------------------------~~~~~v~~v~~~~~~~~l~s~~ 121 (268)
.. . + +.-..| +..+.-..++|-.||+++|+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 20 0 0 000000 0011223578999999999876
Q ss_pred C------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC--CCeEEEEeCCCCceEEeec-----CCC
Q 024372 122 F------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIVQTLE-----TKS 188 (268)
Q Consensus 122 ~------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~-----~~~ 188 (268)
- -+.+|+|+ +.+.. ........+--.+++|-|.|..++++-.. ...|.+|. |.|-.-..|. ...
T Consensus 229 ~~~~~~~~R~iRVy~-ReG~L-~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 229 VEPETGSRRVIRVYS-REGEL-QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEcCCCceeEEEEEC-CCceE-EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence 4 36799998 33332 12222233444578999887544433321 13455564 3332222222 234
Q ss_pred CEEEEEECCCCcEEEEeCCCeEEEEeCCCceee--eEEeCCC--CceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLV--KGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 189 ~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
.+..+.|++|+..|+..-...|.+|-..+|.-- +.+..+. ....+.|++.....|.....++.+..+++
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 689999999999998765556999999988642 2333322 23447888877777777777666655543
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=8.4e-06 Score=73.86 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=130.6
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCc-EEEEEecCCCcEEEEeeCCC-----cEEEEeCCCC------Cee
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG------DEK 96 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~------~~~ 96 (268)
+.+..++.|+++|.|.+.+.. -+.++.|..+... |..+....+..+|++.+.|. .+++|+++.. ++.
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~ 111 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL 111 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence 467789999999999887643 3455778777766 55444444446788877664 4899998643 222
Q ss_pred ---eeec-----cCCeEEEEEECCCCCEEEEeeCCCeEEEEE--C-CCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 97 ---HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFD--L-NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 97 ---~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d--~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
+.++ .+.++.+++.+.+-+.++.|-.+|.|..+. + +............+++|+.+.+..++...+-+.+
T Consensus 112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 2222 245688899999999999999999998884 2 1212222333455679999999877776333334
Q ss_pred CCCeEEEEeCCCCce-EEeecCC-CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372 166 DSGGVRLWDARSGKI-VQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~-~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~ 225 (268)
. ..|.+|.+....+ ...+..+ .+.+|..+++.-.-++++.+..+.+||....++--+|.
T Consensus 192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 4 6799999984332 3445543 45888888877655667777789999986544333343
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=4e-06 Score=67.41 Aligned_cols=187 Identities=18% Similarity=0.114 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccC----Ce
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHK----HI 104 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~----~~ 104 (268)
++.++++++.++.+..+|..+|+.+-++.. .+.+...-...++ .++.+..|+.++.+|..+++..... ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-ccccccceeeeEecccCCcceeeeecccccccccc
Confidence 456788889999999999999997766653 1221111112233 3444557889999999999987774 211 11
Q ss_pred EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCC-cc--------cEEEEEEeCCCCcEEEEeeCCCe-EEEEe
Q 024372 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SG--------SIRTVAWLHSDQTILSSCTDSGG-VRLWD 174 (268)
Q Consensus 105 v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~--------~v~~~~~~~~~~~~~~~~~~d~~-i~iwd 174 (268)
.........+..++.+..++.+..+|+.+++......... .. ....-....++ .++++.. ++. +.+ |
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~-d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG-DGRVVAV-D 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC-TSSEEEE-E
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC-CCeEEEE-E
Confidence 1111222236778888889999999988775433332211 11 11122222333 5555544 464 666 9
Q ss_pred CCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee
Q 024372 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK 222 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~ 222 (268)
+++++.+.... ......+....++.+++.+.++.|..||+++++.+-
T Consensus 190 ~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 99999765333 223333233444444445578999999999987654
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=6.2e-07 Score=79.57 Aligned_cols=227 Identities=11% Similarity=0.090 Sum_probs=137.7
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCC---------------eEEEeeCccCcEEEEEecCCCcEEEEee
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGS 80 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~---------------~~~~~~~h~~~V~~~~~~~~~~~l~s~s 80 (268)
.....+++|+- ...|+|+|+.||.+++..+.+.. --+++.||++.|.-+.|..+.+.|-|..
T Consensus 14 nvkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 44567899984 45599999999999998554321 1257789999999999999888888888
Q ss_pred CCCcEEEEeCCCCCeee---eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 81 ADFTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
.+|.|.+|-+..+.=.. .-..++.|.+++|+.+|..++..-.||.+.+=.++..+.--.... ......+.|+++.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccH
Confidence 99999999986654211 123566789999999999888888888776655432111001111 1123457788776
Q ss_pred CcEEEEeeCCCeEEEEeCCCCc-------eEEe----ec-CCCCEEEEEEC--------CCCcEEE-EeCCCeEEEEeCC
Q 024372 158 QTILSSCTDSGGVRLWDARSGK-------IVQT----LE-TKSPVTSAEVS--------RDGRYIT-TADGSSVKFWDAN 216 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~-------~~~~----~~-~~~~v~~~~~s--------~~g~~l~-~~~~~~v~~wd~~ 216 (268)
..++. +-..|.+.++|-+..- |.-. +. ....+..+.|. |+.-.++ +=+.|.+.+-.-+
T Consensus 169 ~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 169 EQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 54443 3455889999875321 1000 10 01123344442 3443443 3345555554433
Q ss_pred CceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372 217 HFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 249 (268)
+....-.+..+-.....-|.+ .|..|+.+|.|
T Consensus 248 ND~~Pvv~dtgm~~vgakWnh-~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 248 NDPEPVVVDTGMKIVGAKWNH-NGAVLAVCGND 279 (1189)
T ss_pred CCCCCeEEecccEeecceecC-CCcEEEEccCc
Confidence 322222333333334445555 68888887764
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=6.1e-08 Score=54.65 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=32.7
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN 47 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~ 47 (268)
...+.+|+++|++++|+| ++++|++|+.|++|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 456789999999999996 789999999999999997
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=6e-06 Score=65.39 Aligned_cols=149 Identities=15% Similarity=0.032 Sum_probs=106.0
Q ss_pred EEEEEeCCCCeEEeeCCCCCeEEEeeCccCc--EEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--ee--eeccCCeEE
Q 024372 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGA--VWSCCLDANALFSASGSADFTAKLWDALTGDE--KH--SFEHKHIVR 106 (268)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~--~~~~~~~v~ 106 (268)
-+..++.|.++++.+++-+... +.-|-.. +..++++++++++++.+....|.+|.+..... .. ..+..+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 4667899999998877654322 2224443 78899999999999999999999998754332 11 112334456
Q ss_pred EEEECCCCCEEEEeeCCCeEEEEECCCCCCCC----eEecCCcccEEEEEEeCCCCc--EEEEeeCCCeEEEEeCCCCce
Q 024372 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----REVGNSSGSIRTVAWLHSDQT--ILSSCTDSGGVRLWDARSGKI 180 (268)
Q Consensus 107 ~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~ 180 (268)
+.+|+.....+|++..||.+-+||++....+. ....+|.|.+..+.|++.+.. ++.+=. -+.+.+-|+|+++.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVN 286 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccCce
Confidence 78899999999999999999999987543322 233468999999999876643 333322 26899999999876
Q ss_pred EEee
Q 024372 181 VQTL 184 (268)
Q Consensus 181 ~~~~ 184 (268)
.+.+
T Consensus 287 ~q~I 290 (344)
T KOG4532|consen 287 HQVI 290 (344)
T ss_pred eeEE
Confidence 5543
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2e-06 Score=71.52 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=125.9
Q ss_pred eeCCCCCeEEEeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC-CCEEEEeeCC
Q 024372 46 RNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTGGFE 123 (268)
Q Consensus 46 w~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~s~~~d 123 (268)
.+..+-+....+.+|...|+.++|+|... ++..++.+.+|+|.|+++..++..+.....+.+++|..+ ...++.|..+
T Consensus 178 l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 178 LESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred eccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccC
Confidence 33333333444566778899999999876 678899999999999999999888887789999999885 4678888899
Q ss_pred CeEEEEECCCCCCCCeEec--CCcccEEEEEEeCCCC-----cEEEEeeCCCeEEEEeCCC----CceEEeecCCCCEEE
Q 024372 124 KILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQ-----TILSSCTDSGGVRLWDARS----GKIVQTLETKSPVTS 192 (268)
Q Consensus 124 ~~i~~~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-----~~~~~~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~ 192 (268)
|.|.+||++.++....++. ....+|..++..+.+. -+++.... -+..|...- -.++..++..+.+.+
T Consensus 258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cis 335 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICIS 335 (463)
T ss_pred ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceee
Confidence 9999999987664433321 1234566665554432 12222222 244555421 112222333334444
Q ss_pred EEECCCCcE-EEEeCC-------CeE-EEEeCCCceee----eEE-eC---CCCceeeEEcCCCCCEEE-eccCCCeEEE
Q 024372 193 AEVSRDGRY-ITTADG-------SSV-KFWDANHFGLV----KGY-NM---PCNTESASLEPKLGNIFI-AGGEDMWVHV 254 (268)
Q Consensus 193 ~~~s~~g~~-l~~~~~-------~~v-~~wd~~~~~~~----~~~-~~---~~~~~~~~~~~~~~~~~~-~gs~d~~i~~ 254 (268)
....+-.+. +++-.. +.| ..-|.+.+..+ .++ .. +.......+.+.+..+++ .|.+-..+.+
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence 444443333 333211 011 11122222221 112 11 111122233333455555 4556678999
Q ss_pred EECCCCcEEeec
Q 024372 255 FDFHTGEQIAIT 266 (268)
Q Consensus 255 wd~~~g~~~~~~ 266 (268)
||..+++.+..+
T Consensus 416 ~D~~s~evvQ~l 427 (463)
T KOG1645|consen 416 QDPHSFEVVQTL 427 (463)
T ss_pred eccchhheeeec
Confidence 999988877653
No 301
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.64 E-value=4e-05 Score=66.62 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=130.8
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEE-EEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEE-
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC- 108 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v- 108 (268)
+..++.++.++.+.-+|.++|+.+=+.... +.+.+ ..+. ++ .++.+..++.+..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 446677888999999999999865433322 12211 1112 34 3445667889999999999987766533211100
Q ss_pred -EECC--CCCEEEEeeCCCeEEEEECCCCCCCCeEe-cCCcc--c---EEEEEEeC--CCCcEEEEeeCCCeEEEEeCCC
Q 024372 109 -AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSG--S---IRTVAWLH--SDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 109 -~~~~--~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~--~---v~~~~~~~--~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
.-+| .+..++.++.++.+..+|..+++...+.. ....+ . ...+...| .++.++++ +.++.+.-.|+++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL-AYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE-EcCCeEEEEECCC
Confidence 0122 12346667778888888877665433221 11000 0 00000011 13445544 4568999999999
Q ss_pred CceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCC-CC-ceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372 178 GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP-CN-TESASLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~gs~d~~i~~w 255 (268)
|+.+...+.... ..+.. .++++++.+.++.+..+|..+++.+-..... .. ..+... .+..++.++.|+.+++.
T Consensus 276 G~~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 276 GQIVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred CCEEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEE
Confidence 998765543221 12222 2455566677889999999887665433221 11 111111 25667888999999999
Q ss_pred ECCCCcEEee
Q 024372 256 DFHTGEQIAI 265 (268)
Q Consensus 256 d~~~g~~~~~ 265 (268)
|.++|+.+..
T Consensus 351 d~~tG~~~~~ 360 (394)
T PRK11138 351 NREDGRFVAQ 360 (394)
T ss_pred ECCCCCEEEE
Confidence 9999998754
No 302
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.63 E-value=0.00012 Score=59.03 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=115.8
Q ss_pred cEEeeecCCCeeeEEEecCCCCCcEEEEE-eCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSA-SKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 9 ~~~~~~h~~~v~~~~f~~~~~dg~~l~s~-s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
++.+.+-.+.+.+|.|+| +...|++. ...+.|...+. +|+.++++.-. .+-.-.+++..++.++++.-+++.+.
T Consensus 14 ~~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EEE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eeECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 444556666799999996 44445544 44444444564 68888877533 35678888988888887777799999
Q ss_pred EEeCCCCC----e--eeeec------cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCC--CCCCCeE--------ecCC
Q 024372 87 LWDALTGD----E--KHSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNS 144 (268)
Q Consensus 87 iw~~~~~~----~--~~~~~------~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~--~~~~~~~--------~~~~ 144 (268)
+.++.... . ...+. +...+-.++|++.++.|+.+-.....++|.+.. ....... ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99883321 1 11121 233578899999877777776666667776643 1111111 0112
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC----------CCEEEEEECCCCcEEEEeCCCeEEE
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKF 212 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~~~~v~~ 212 (268)
...+..+.+.|..+++++-+...+.|..+| ++|+.+..+... .....+++.++|++.++++-+....
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 335678899999888888888889999999 778877765422 2578999999999988887554443
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=4.7e-05 Score=65.35 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=141.8
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCC---------------eEEeeCCCCCeEEEeeCccCc--EE-EEEecCCCcEEEEe
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSS---------------PMLRNGETGDWIGTFEGHKGA--VW-SCCLDANALFSASG 79 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~---------------i~iw~~~~~~~~~~~~~h~~~--V~-~~~~~~~~~~l~s~ 79 (268)
.|..+.|+| .|+||.+-+.-.. +.+||..+|..+..+.+-..+ .+ -+.|+-+..+.|--
T Consensus 73 ~V~~~~fSP---~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 73 DVKYLDFSP---NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CceecccCc---ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 567777774 8999999865544 889999999999999876555 44 56788777776544
Q ss_pred eCCCcEEEEeCCCCCeeeeec--cCCeEEEEEECCC--CCEEEE-----eeCCCeEEEEECCCCCCCCeEecCCcccEEE
Q 024372 80 SADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED--THLLLT-----GGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (268)
Q Consensus 80 s~D~~v~iw~~~~~~~~~~~~--~~~~v~~v~~~~~--~~~l~s-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~ 150 (268)
-...++|+++..+-....+. ....+....++|. +..|+. .+....+++|.+...... ....-.+..-..
T Consensus 150 -v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~q 227 (561)
T COG5354 150 -VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQ 227 (561)
T ss_pred -ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccE
Confidence 34578899872222211111 1234666677774 334443 466778899988643322 111111122234
Q ss_pred EEEeCCCCcEEEE---e-------eCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-e--CCCeEEEEeCCC
Q 024372 151 VAWLHSDQTILSS---C-------TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A--DGSSVKFWDANH 217 (268)
Q Consensus 151 ~~~~~~~~~~~~~---~-------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~--~~~~v~~wd~~~ 217 (268)
+.|.+.+..++.- - .....+.|++++...+--......+|...+|.|.++.++. + ....+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 5666666543321 1 1124688888885554333355788999999999866543 3 357889999986
Q ss_pred ceeeeEEeCCC-CceeeEEcCCCCCEEEeccCC---CeEEEEECCCC
Q 024372 218 FGLVKGYNMPC-NTESASLEPKLGNIFIAGGED---MWVHVFDFHTG 260 (268)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d---~~i~~wd~~~g 260 (268)
. +. +..+. ......|+| .+++++.++-| +.|.+||....
T Consensus 308 N--l~-~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 308 N--LR-FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred c--eE-EecCCcccccccccC-cccEEEEecCCccccceEEeccCCc
Confidence 5 33 33332 233444455 56666665443 56888887543
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3.9e-06 Score=74.67 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=125.7
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC--ccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
+.||++.|..+.|+. ..+.|-+...+|-|.+|-..+|.+...+-. .+.-|.+++|..+|..++-.=.||.|.+=.
T Consensus 67 LeGH~~sV~vvTWNe---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNE---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hccCcceEEEEEecc---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 469999999999985 567888889999999999999987665532 466799999999999887777788776654
Q ss_pred CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC---CCCeE-------ecCCcccEEEEEE------
Q 024372 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD---APPRE-------VGNSSGSIRTVAW------ 153 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~---~~~~~-------~~~~~~~v~~~~~------ 153 (268)
+..+..-..--.......+.|++|.+.+..+-.+|.+.+||..... ..... +......+-.+.|
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 4332210000011224468899999888888888999999854211 00010 1111112334444
Q ss_pred -eCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE
Q 024372 154 -LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT 204 (268)
Q Consensus 154 -~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 204 (268)
.+++.-.++.|.+.|.+.|---.....-..+.....+..+.|+|+|.+++.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAV 275 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEE
Confidence 344455677888888888854433333333444455778999999999864
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.59 E-value=3.3e-05 Score=67.21 Aligned_cols=222 Identities=12% Similarity=0.033 Sum_probs=130.2
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEE--eeCccCc-------E--EEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGA-------V--WSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~h~~~-------V--~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (268)
+..+..++.++.+.-+|..+|+.+=+ +...... . ..+.. .+..+..++.++.+..+|..+++.+-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 44777888889888899999985532 2221000 0 00111 2334555678899999999999987776
Q ss_pred ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc-----ccEEEEEEeCCCCcEEEEeeCCCeEEEEe
Q 024372 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (268)
Q Consensus 100 ~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~d~~i~iwd 174 (268)
.....+.+--.- .+..++.+..++.+.-+|..+++...+...... +...-+. . ++.+++ ++.++.+...|
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~--~~~v~~-~~~~g~v~a~d 221 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-A--FGGAIV-GGDNGRVSAVL 221 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-E--CCEEEE-EcCCCEEEEEE
Confidence 544433211000 234566677788899999887765433321100 0000011 1 223444 44568999999
Q ss_pred CCCCceEEeecCCCC--------EEEEEECC---CCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEE
Q 024372 175 ARSGKIVQTLETKSP--------VTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (268)
Q Consensus 175 ~~~~~~~~~~~~~~~--------v~~~~~s~---~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (268)
.++|+.+...+...+ ...+..+| ++..++++.++.+...|..+++.+-....... ..... .+..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~---~~~~v 297 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV---DGGRI 297 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE---ECCEE
Confidence 999987655432110 11111222 55566667788999999988876654443221 11111 35567
Q ss_pred EeccCCCeEEEEECCCCcEE
Q 024372 244 IAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~ 263 (268)
+.++.|+.++.+|.++|+++
T Consensus 298 y~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEEcCCCeEEEEECCCCcEE
Confidence 77788899999999998865
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.57 E-value=5.9e-05 Score=71.94 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=141.0
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeC---C---CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---CCcE
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASK---D---SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTA 85 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~---d---~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---D~~v 85 (268)
+...-..++|. .||+|+|+.+. . +.+|||+-+ |++..+-+.-.+--..++|.|.|.++|+.-. ...|
T Consensus 208 ~dd~~~~ISWR---GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWR---GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEEC---CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 44455689998 69999999986 2 467899865 7665554433333456789999999998764 3566
Q ss_pred EEEeCCCCCeeeeec-----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEec-CCcccEEEEEEeCCCC
Q 024372 86 KLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVG-NSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~ 158 (268)
.+|.-+ |.....|. ....|..+.|++++.+||.-..|. |.+|-....... .+++. .....+..+.|.|..+
T Consensus 284 vFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 284 VFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 677753 33333332 234689999999999999877555 999987654322 22322 1222344588888776
Q ss_pred cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECC-CCcEEEEeCCCeEEEEeCCCcee-----eeEEeCCCCcee
Q 024372 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITTADGSSVKFWDANHFGL-----VKGYNMPCNTES 232 (268)
Q Consensus 159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~v~~wd~~~~~~-----~~~~~~~~~~~~ 232 (268)
..+...+.+|.+..++..-. ... +-..+| |.-.++..++..+++=+++.... ...+..+..+..
T Consensus 362 ~~L~v~t~~g~~~~~~~~~~-----v~~-----s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 362 LRLHVLTSNGQYEIYDFAWD-----VSR-----SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CEEEEEecCCcEEEEEEEEE-----EEe-----cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 65544444466655543200 000 000112 22345556777888877765432 234445667777
Q ss_pred eEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 233 ASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+++.+ ++..+++-..|+.|.+|...
T Consensus 432 vaf~~-~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 432 VAFSP-SNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEeC-CCCeEEEEECCCCEEEEEec
Confidence 88877 46668888889988888854
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=0.00031 Score=57.73 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=125.9
Q ss_pred eEEEecCCCCCcEEEEEeCCCCe-EEeeCCCCCeEEEeeCccCcEEE--EEecCCCcEEEEeeC-----CCcEEEEeCC-
Q 024372 21 DLFYSPITPDGFFLVSASKDSSP-MLRNGETGDWIGTFEGHKGAVWS--CCLDANALFSASGSA-----DFTAKLWDAL- 91 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i-~iw~~~~~~~~~~~~~h~~~V~~--~~~~~~~~~l~s~s~-----D~~v~iw~~~- 91 (268)
+++.+|. .+..++.+-+-|+- .++|..+++....+....+.-+. -.|++||++|.+.-. .|.|-|||..
T Consensus 9 ~~a~~p~--~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 9 GVAAHPT--RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ceeeCCC--CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4556653 45677777777765 46899988877665432222111 358999999876533 4789999998
Q ss_pred CCCeeeeecc-CCeEEEEEECCCCCEEEEeeC------------------CCeEEEEECCCCCCCCe-Ee--cCCcccEE
Q 024372 92 TGDEKHSFEH-KHIVRACAFSEDTHLLLTGGF------------------EKILRIFDLNRPDAPPR-EV--GNSSGSIR 149 (268)
Q Consensus 92 ~~~~~~~~~~-~~~v~~v~~~~~~~~l~s~~~------------------d~~i~~~d~~~~~~~~~-~~--~~~~~~v~ 149 (268)
+...+..+.. .---.-+.+.||++.|+.+.. +-.+.+.|..+++...+ .. ..|+-.+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 4444455532 112233557888877776521 11122333344432222 12 23455677
Q ss_pred EEEEeCCCCcEEEEeeCCCe-------EEEEeCCCCceEEeec--------CCCCEEEEEECCCCcEEEEe--CCCeEEE
Q 024372 150 TVAWLHSDQTILSSCTDSGG-------VRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTA--DGSSVKF 212 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~-------i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~--~~~~v~~ 212 (268)
.+++.+++. ++.+.-..+. |-++ +.++.+..+. ...-+-++++++++.+++.+ .++.+-+
T Consensus 167 HLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~--~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 167 HLAVDGDGT-VAFAMQYQGDPGDAPPLVALH--RRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eEEecCCCc-EEEEEecCCCCCccCCeEEEE--cCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 777766543 3333333221 2232 2233333332 23568899999999887655 4789999
Q ss_pred EeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCC
Q 024372 213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (268)
Q Consensus 213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~ 250 (268)
||..+++.+.....+ ..+.++.. .+.++++.+...
T Consensus 244 ~d~~tg~~~~~~~l~-D~cGva~~--~~~f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP-DACGVAPT--DDGFLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccC-ceeeeeec--CCceEEeCCCcc
Confidence 999998887766654 22223322 233555555543
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=0.00027 Score=57.23 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=116.1
Q ss_pred EEEecC-CCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEEC-CCCCEEEEeeCCCeEEEEECCCCCCCCeEe--
Q 024372 66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREV-- 141 (268)
Q Consensus 66 ~~~~~~-~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~-- 141 (268)
...|.+ ++.++.+--..+.|..|+..++.... +.... ...+.+. +++.+++ +...+ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeecc
Confidence 345776 66677777778899999987765533 33333 4455666 6665544 44444 4566877653221111
Q ss_pred -cC-CcccEEEEEEeCCCCcEEEEeeCC--------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE--eCCCe
Q 024372 142 -GN-SSGSIRTVAWLHSDQTILSSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT--ADGSS 209 (268)
Q Consensus 142 -~~-~~~~v~~~~~~~~~~~~~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~~~ 209 (268)
.. .....+.+++.+++. +.++.... +.|..++.. ++.......-...+.++|+|+++.|.. +..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 11 234567788888765 44443332 457777877 665444444456899999999986643 34578
Q ss_pred EEEEeCCCc-e-e--eeEE-eCCCC---ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 210 VKFWDANHF-G-L--VKGY-NMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 210 v~~wd~~~~-~-~--~~~~-~~~~~---~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
|..+|+... . . .+.+ ..+.. +..+++.. +|.++++.-..+.|.++|.. |+.+...
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 888887432 1 1 1222 22222 34556666 68888887778889999976 8877653
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.8e-05 Score=66.61 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=70.3
Q ss_pred eEEEEEECCCCCEEEEeeC---CCeEEEEECCCCCCCCeEe-cCCcccEEEEEEeCCCCcEEEEe--eCCCeEEEEeCCC
Q 024372 104 IVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARS 177 (268)
Q Consensus 104 ~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~iwd~~~ 177 (268)
.|...+|.|.|..+++-+. ..++..|-+++........ .......+.+.|+|.|+.+++++ +..|.+..+|+.-
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 4556678898877765432 2557777765211111111 11122456789999999876654 3367899999875
Q ss_pred CceEEee-cCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCC
Q 024372 178 GKIVQTL-ETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDAN 216 (268)
Q Consensus 178 ~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~ 216 (268)
..+..+- ..|...+.+.|.|.|+|++++. |..-++|+.+
T Consensus 527 a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 527 ADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 4433322 2345578899999999997643 4456777765
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.00021 Score=67.39 Aligned_cols=199 Identities=12% Similarity=0.176 Sum_probs=127.0
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeC----C
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA----L 91 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~----~ 91 (268)
...|.++.|.. +++.+..+..+|.|.+.|.+++.+. ....-...|.+.+|+||+..++-...++++.+-.- -
T Consensus 68 d~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLA---DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEec---ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 35788999974 6778888999999999999887532 12223568999999999999887777777776432 1
Q ss_pred CCCee-------------------eeec-------------cCC---------eEEEEEECCCCCEEEE-----eeCCCe
Q 024372 92 TGDEK-------------------HSFE-------------HKH---------IVRACAFSEDTHLLLT-----GGFEKI 125 (268)
Q Consensus 92 ~~~~~-------------------~~~~-------------~~~---------~v~~v~~~~~~~~l~s-----~~~d~~ 125 (268)
.-+.. ..+. +.. .=..++|--||+++++ ...-+.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11110 0110 000 0124888889999987 333389
Q ss_pred EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe--eCCCeEEEEeC---CCCceEEeecCC-CCEEEEEECCCC
Q 024372 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDA---RSGKIVQTLETK-SPVTSAEVSRDG 199 (268)
Q Consensus 126 i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~~i~iwd~---~~~~~~~~~~~~-~~v~~~~~s~~g 199 (268)
|++||-+ +. +........+.-.+++|-|.|..+.+.. ++|+.|.++.- +-|+..-.++.. .++..++|+.++
T Consensus 224 irV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 9999954 32 2222222334456789999765544332 33356888752 333332223322 348999999999
Q ss_pred cEEEE---e-CCCeEEEEeCCCcee
Q 024372 200 RYITT---A-DGSSVKFWDANHFGL 220 (268)
Q Consensus 200 ~~l~~---~-~~~~v~~wd~~~~~~ 220 (268)
..|+. . ....|++|-+.++.-
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEE
Confidence 98875 2 345699999998754
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=2.9e-05 Score=67.88 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=80.7
Q ss_pred eeeEEEecCCCCCcEEEEE----eCCCCeE----EeeCCCCCe--E--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 19 VVDLFYSPITPDGFFLVSA----SKDSSPM----LRNGETGDW--I--GTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~----s~d~~i~----iw~~~~~~~--~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
..++.|+-. +.+.+.+- +.+|.+. +|+...++. + .++ .....|.+++++|+...++.|+.||.|.
T Consensus 208 Pl~~~Fs~~--~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 208 PLDVEFSLN--QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cEEEEccCC--CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 357888742 33455544 4456553 355544432 2 222 3677899999999999999999999999
Q ss_pred EEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC
Q 024372 87 LWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (268)
Q Consensus 87 iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~ 134 (268)
+||..++..... ...-....++|||+|.++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999876644333 34445678999999999999999999999997643
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.7e-07 Score=84.89 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=132.1
Q ss_pred EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEee-CCC-eEEEEE
Q 024372 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGG-FEK-ILRIFD 130 (268)
Q Consensus 54 ~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~-~d~-~i~~~d 130 (268)
.++|+.|...-.+++|+.+..+|+.|+..|.|+++++.+|...... .|+.+|+.+.-+.+|.+.++.+ +.. ..-+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4567788889999999999999999999999999999998866555 4889999988888887766544 333 456898
Q ss_pred CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-C----CCCEEEEEECCCCcEEEEe
Q 024372 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-T----KSPVTSAEVSRDGRYITTA 205 (268)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~----~~~v~~~~~s~~g~~l~~~ 205 (268)
+.+....... -..-.++.|+...+.-++++ ......|||++++..+.++- . ...-+++.|+|+.+++.=
T Consensus 1174 ~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt-~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHS----FDEDKAVKFSNSLQFRALGT-EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred cccccCcccc----ccccceeehhhhHHHHHhcc-cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence 7542111111 12334566654433323332 22468899999998877742 2 123477889999988752
Q ss_pred CCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 206 DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 206 ~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
.-.+||++.-+.++.|..-.......|+| .|..+++-++ +||++|=+++
T Consensus 1248 ---dGvLWDvR~~~aIh~FD~ft~~~~G~FHP-~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 ---DGVLWDVRIPEAIHRFDQFTDYGGGGFHP-SGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred ---CceeeeeccHHHHhhhhhheecccccccC-CCceEEeech-----hhhhHHHHHH
Confidence 23689998877676665433444556666 5777777665 4776654443
No 313
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.43 E-value=0.00011 Score=63.20 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=124.0
Q ss_pred CCeeeEEEecCCCCCcEEEE-----EeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee-----------
Q 024372 17 RPVVDLFYSPITPDGFFLVS-----ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------- 80 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s-----~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s----------- 80 (268)
..|....|+|.. ++..||. ...++.+++|.+-.++.+.+-.--+..=..+.|.+.|.+++.--
T Consensus 174 ~gi~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 174 VGILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred cceeeEEecCCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence 467777888753 3444443 25677788888776654433222222333456677776653111
Q ss_pred CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEee--CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCC
Q 024372 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (268)
Q Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (268)
....++|.++....+.-.....++|...+|+|.++.+++.+ ....+.++|++.. ... ....+.-+.+.|+|...
T Consensus 253 gesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~-~~Pe~~rNT~~fsp~~r 328 (561)
T COG5354 253 GESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRF-YFPEQKRNTIFFSPHER 328 (561)
T ss_pred ccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEE-ecCCcccccccccCccc
Confidence 12457777776555444445678999999999888776644 6677888887642 222 23344556677888888
Q ss_pred cEEEEeeCC--CeEEEEeCCCCc-eEEeecCCCCEEEEEECCCCcEEEEeC-------CCeEEEEeCCC
Q 024372 159 TILSSCTDS--GGVRLWDARSGK-IVQTLETKSPVTSAEVSRDGRYITTAD-------GSSVKFWDANH 217 (268)
Q Consensus 159 ~~~~~~~~d--~~i~iwd~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~v~~wd~~~ 217 (268)
+++.+|.+. |.+-+||....- ++..+... ...-+.|+||+.|+-++. |..|++||+-.
T Consensus 329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 888777653 579999987544 34356542 355678999999875431 66899999853
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.43 E-value=2.1e-06 Score=69.31 Aligned_cols=167 Identities=14% Similarity=0.205 Sum_probs=107.3
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC------------------C-------------------eE----
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------------------D-------------------WI---- 54 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~------------------~-------------------~~---- 54 (268)
++.|+.+.|...+ ....++..+.|++|++|.+... . .+
T Consensus 85 eEKin~I~w~~~t-~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 85 EEKINAIEWFDDT-GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred HHHhhheeeecCC-CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence 4567888886533 3456777899999999976432 0 00
Q ss_pred -EEe-eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee----cc-----CCeEEEEEECCC-CCEEEEeeC
Q 024372 55 -GTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF----EH-----KHIVRACAFSED-THLLLTGGF 122 (268)
Q Consensus 55 -~~~-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~----~~-----~~~v~~v~~~~~-~~~l~s~~~ 122 (268)
+.. ..|.-.+.+++|..|...++|+ .|-.|.+|++.-......+ +| ...|++..|+|. ...+.-.+.
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 011 3466778888898888777654 6789999998654432222 12 235788899994 445666677
Q ss_pred CCeEEEEECCCCC-----CCCe----------EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecC
Q 024372 123 EKILRIFDLNRPD-----APPR----------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET 186 (268)
Q Consensus 123 d~~i~~~d~~~~~-----~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~ 186 (268)
.|+|++-|++... .... .+..-...|..+.|++.+..+++- .. .+|+|||++.. .++.+++.
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-cc-ceEEEEecccccCCceeech
Confidence 8999999987321 1100 011112356778888877655543 33 79999999875 56777654
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.43 E-value=0.00047 Score=55.35 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=107.3
Q ss_pred eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeC-c------cCcEEEEEecCC------CcEEEEeeCCCcEE
Q 024372 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-H------KGAVWSCCLDAN------ALFSASGSADFTAK 86 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~-h------~~~V~~~~~~~~------~~~l~s~s~D~~v~ 86 (268)
+-++|+ ||+.+||.+...|+|+++|....+ +..+.. + ...|..+.|-+- ..-|..-..+|.++
T Consensus 47 Rkl~WS---pD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 47 RKLAWS---PDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred eEEEEC---CCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 478897 599999999999999999987543 334432 1 234555544321 11244455677777
Q ss_pred EEeCC--CCC---eeeeec----cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 87 LWDAL--TGD---EKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 87 iw~~~--~~~---~~~~~~----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
-+-+. +++ ..+.+. .+..|.++.++|..++|+.|+.... +.+. .. .....+++-....+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~---s~--a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM---SK--ASSCGLTAWRILSDS 191 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc---cc--ccccCceEEEEcCCC
Confidence 66652 222 233332 3567999999999888887764332 0000 00 011123333333333
Q ss_pred CcEE-EEeeCCCe------EEEEeCCCCceEE-eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeC
Q 024372 158 QTIL-SSCTDSGG------VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 158 ~~~~-~~~~~d~~------i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~ 226 (268)
+++. ++..+|+. -.+|.+-+.+... .-+....+..+.+||||.+|++ ..+|.|.+|++-..+..+.+..
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 3321 22222221 1233322222111 1122456899999999999886 5689999999977665555543
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=6.5e-06 Score=75.02 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=103.3
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC---------CCcEEEEeCCCCCeeeeec
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---------DFTAKLWDALTGDEKHSFE 100 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~---------D~~v~iw~~~~~~~~~~~~ 100 (268)
++++|.+|...|+|.+-|..+.+.++++.+|++.|... +-.|..|+|+|. |..|+|||+.....+..+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 46799999999999999999999999999999999764 445777888764 5678999997766555444
Q ss_pred cCCeEEEEEECCC-CCEEEEeeCCCeEEEEE---CCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 101 HKHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 101 ~~~~v~~v~~~~~-~~~l~s~~~d~~i~~~d---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
.+..-.-+.|+|. ...++.++..|...+-| +..+......+......+..+++++.++. ++-+..+|.|.+|--
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~a-lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDA-LAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCce-EEEecccCcEeeecC
Confidence 3332345667773 44677778888888888 43332333344334445888888887765 455566799999973
No 317
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=0.00013 Score=63.38 Aligned_cols=228 Identities=19% Similarity=0.229 Sum_probs=141.3
Q ss_pred eEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeC-----------CCcEEEEe
Q 024372 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-----------DFTAKLWD 89 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~-----------D~~v~iw~ 89 (268)
-+.|+ |-|.||+|--.-| |.+|-..+-..++.|. |. .|.-+.|||+..||+|=|. .+.+.|||
T Consensus 215 yv~wS---P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 215 YVRWS---PKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eEEec---CCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 35666 4799998776655 5789877766666664 53 5888999999999998653 16799999
Q ss_pred CCCCCeeeeecc---CCe-EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee
Q 024372 90 ALTGDEKHSFEH---KHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (268)
Q Consensus 90 ~~~~~~~~~~~~---~~~-v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 165 (268)
+.+|...+.+.. +.. -.-..||.|++++|--.. +.|.+|+..+-. +.....-.-..|....|+|.+ .+++.=+
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~-~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTS-NLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCc-ceEEEEc
Confidence 999998888754 222 235679999999987655 568899865421 111111122356777888764 3444311
Q ss_pred CC-----CeEEEEeCCCCceEEeecCCC-CEEEEEECCCCcEEEEeCC--------C---eEEEEeCCCc-eeeeEEeCC
Q 024372 166 DS-----GGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADG--------S---SVKFWDANHF-GLVKGYNMP 227 (268)
Q Consensus 166 ~d-----~~i~iwd~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~--------~---~v~~wd~~~~-~~~~~~~~~ 227 (268)
.. -++-|-.+.+++.+++-.... .=..+.|-.+|.+|..--+ + .+.|+.++.. -++......
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11 245666666666666544321 1224556778887753211 1 2445555432 224444555
Q ss_pred CCceeeEEcCCCCCEEE-eccC--CCeEEEEECC
Q 024372 228 CNTESASLEPKLGNIFI-AGGE--DMWVHVFDFH 258 (268)
Q Consensus 228 ~~~~~~~~~~~~~~~~~-~gs~--d~~i~~wd~~ 258 (268)
..+...++.|. |+.|+ ..+. -.++.+|.++
T Consensus 446 e~vi~FaWEP~-gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 446 ESVIAFAWEPH-GDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred hheeeeeeccC-CCeEEEEEccccccceeEEEee
Confidence 66677888886 55454 3443 3469999887
No 318
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=0.00015 Score=61.98 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=104.0
Q ss_pred ECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeCCCCceEEeecCC
Q 024372 110 FSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETK 187 (268)
Q Consensus 110 ~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~ 187 (268)
|++ +|.+++..+. |+..+.+...+ ......+.+.|.-..+..+...++ -|..|| .+-|+|.++++.....+.-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~---~~iqv~~~~~VrY~r~~~~~e~~v-igt~dgD~l~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG---YSIQVGKKGGVRYRRIQVDPEGDV-IGTNDGDKLGIYDKDGGEVKRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC---eeEEcCCCCceEEEEEccCCcceE-EeccCCceEEEEecCCceEEEeeCCc
Confidence 444 6788888775 45556554322 122234555676666554444444 445566 9999999999877766667
Q ss_pred CCEEEEEECCCCcEEEEeCC-CeEEEEeCCCceeeeEEeCC--CCceeeEEcCCCCCEEEeccCC----CeEEEEECCCC
Q 024372 188 SPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGGED----MWVHVFDFHTG 260 (268)
Q Consensus 188 ~~v~~~~~s~~g~~l~~~~~-~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gs~d----~~i~~wd~~~g 260 (268)
+.+.+++.+|+|++++.+.+ ..+.+.|+.++. ++..... ..+..+.+++ .+++++-+--+ ..|++||+.+|
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 78999999999999887765 578888988764 3333322 2355677777 58999887655 46999999999
Q ss_pred cEEeecc
Q 024372 261 EQIAITS 267 (268)
Q Consensus 261 ~~~~~~~ 267 (268)
+...+.|
T Consensus 480 Kiy~vTT 486 (668)
T COG4946 480 KIYDVTT 486 (668)
T ss_pred eEEEecC
Confidence 9888765
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00028 Score=63.11 Aligned_cols=228 Identities=15% Similarity=0.118 Sum_probs=128.1
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCc-----EE-EEEecCCCcEEEEee---------CCCcEEEEeCCCCCee
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-----VW-SCCLDANALFSASGS---------ADFTAKLWDALTGDEK 96 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~-----V~-~~~~~~~~~~l~s~s---------~D~~v~iw~~~~~~~~ 96 (268)
..++.++.++.+.-+|.++|+.+=++...... +. ...+. ++. ++.++ .++.+...|..+++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778889999999999999876444322110 11 11122 233 33332 3678888999999877
Q ss_pred eeeccCCe---------------------E-EEEEECCCCCEEEEeeCCC------------------eEEEEECCCCCC
Q 024372 97 HSFEHKHI---------------------V-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDA 136 (268)
Q Consensus 97 ~~~~~~~~---------------------v-~~v~~~~~~~~l~s~~~d~------------------~i~~~d~~~~~~ 136 (268)
-.+..... + ....+.+.+..++.++.++ .+.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 66542110 0 0123344455666666554 577778777665
Q ss_pred CCeEecC-Cccc---E-E--EEE-Ee-CCCC--cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-
Q 024372 137 PPREVGN-SSGS---I-R--TVA-WL-HSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT- 204 (268)
Q Consensus 137 ~~~~~~~-~~~~---v-~--~~~-~~-~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~- 204 (268)
.-+.... +... . . .+. .. -++. .++..++.+|.+.-.|.++|+.+...+.. ...+..+| +..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC-ceEEEcc
Confidence 4433211 1100 0 0 010 00 0111 24555667799999999999988765432 11223344 222221
Q ss_pred -----------------eCCCeEEEEeCCCceeeeEEeCCC---------CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 205 -----------------ADGSSVKFWDANHFGLVKGYNMPC---------NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 205 -----------------~~~~~v~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
..++.+.-.|+.+++.+-.+.... ......... .+..++.++.|+.|+.+|.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECC
Confidence 124567778888877766555431 111111111 36778888899999999999
Q ss_pred CCcEEee
Q 024372 259 TGEQIAI 265 (268)
Q Consensus 259 ~g~~~~~ 265 (268)
+|+++-.
T Consensus 425 tG~~lW~ 431 (488)
T cd00216 425 TGKELWK 431 (488)
T ss_pred CCceeeE
Confidence 9998754
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=5.1e-05 Score=67.55 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=121.6
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee-------ec
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-------FE 100 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-------~~ 100 (268)
..+.+++-|+.-|.+.+++-..|+. +.+..+-.+.+..++++++..++|.|+..|.|-++.++...+... ..
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKS 122 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccccc
Confidence 3578999999999999999888763 344445566777888999999889999999999998765443111 13
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCC---CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
|+..|++++|++++..+++|...|++.+--++.. -...+.+....++|..+.+.. ..++++... .-.+++++.
T Consensus 123 ~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~ 198 (726)
T KOG3621|consen 123 HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEA 198 (726)
T ss_pred CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecch
Confidence 6778999999999999999999999987766541 111233334456777777653 344443322 345677765
Q ss_pred CceEE--eecCCCC-EEEEEECCC-----CcEEEEeCCCeEEEEeCCC-ceeeeEEe
Q 024372 178 GKIVQ--TLETKSP-VTSAEVSRD-----GRYITTADGSSVKFWDANH-FGLVKGYN 225 (268)
Q Consensus 178 ~~~~~--~~~~~~~-v~~~~~s~~-----g~~l~~~~~~~v~~wd~~~-~~~~~~~~ 225 (268)
+...+ +-.-.+. -...+|-|. .-++.++. -..|+|...- ++.++++.
T Consensus 199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADFAGEVIKTHQ 254 (726)
T ss_pred hHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeecceeEEEeee
Confidence 54211 1111221 123333332 23445554 3567776643 34445554
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=4.6e-06 Score=65.71 Aligned_cols=230 Identities=16% Similarity=0.169 Sum_probs=129.0
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe------------EEEeeCccCcEEEEEecCCCcEEEEeeCCCcEE
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------------IGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~------------~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 86 (268)
|+.+.|. +...|+++-.++.+.......+.+ ...+..|+++-..-+.+--+..++++..|+.+-
T Consensus 39 ~~~~~~v----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~ 114 (319)
T KOG4714|consen 39 LSKVSLS----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLA 114 (319)
T ss_pred EEEeech----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEE
Confidence 5556665 345788888888777665444332 223333443322111222234578899999999
Q ss_pred EEeCCCCCeeeeeccCCeEEE-----EEECCCCCEEEEee-----CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCC
Q 024372 87 LWDALTGDEKHSFEHKHIVRA-----CAFSEDTHLLLTGG-----FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (268)
Q Consensus 87 iw~~~~~~~~~~~~~~~~v~~-----v~~~~~~~~l~s~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (268)
+.+... .....++.++.. .+....++.+.++. .-+..+.|+++-.+...... .....+.+++-.|.
T Consensus 115 v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 115 VFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPA 190 (319)
T ss_pred EEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcc
Confidence 998654 111112221111 11122333333321 11223455543211111111 11234888888888
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCceEE-eec-CCCCEEEEEECCCC--cEEEEeCCCeEEEEeCCCcee------------
Q 024372 157 DQTILSSCTDSGGVRLWDARSGKIVQ-TLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGL------------ 220 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~s~~g--~~l~~~~~~~v~~wd~~~~~~------------ 220 (268)
.++++..|++||.+-+||.|...... .+. ++.++..+.|+|.. +++.+++||.+--||..+.-+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~W 270 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSW 270 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccccccc
Confidence 88999999999999999999874432 333 45778999999863 677889999999999763111
Q ss_pred -----eeE-EeC----CCCceeeEEcCCCCCEEEeccCCCeEEEEE
Q 024372 221 -----VKG-YNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (268)
Q Consensus 221 -----~~~-~~~----~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd 256 (268)
++. ... +....++.-+.--|..+++|+.-+.||+++
T Consensus 271 LsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 271 LSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 110 000 111111211222477899999999999986
No 322
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.32 E-value=0.0011 Score=54.49 Aligned_cols=222 Identities=16% Similarity=0.110 Sum_probs=125.5
Q ss_pred CCcEEEEEeCCCCeEEeeC-CCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee-----------
Q 024372 30 DGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----------- 97 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~----------- 97 (268)
.++.|+.|+.+| +.+++. ...+..... +...|..+..-++-..++.-+ |+.+.++++.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 577899999999 788887 333333333 233499998888766655443 5999999986544332
Q ss_pred ----eeccCCeEEEEE--ECCCCCEEEEeeCCCeEEEEECCCCC----CCCeEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 98 ----~~~~~~~v~~v~--~~~~~~~l~s~~~d~~i~~~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
.+.....+...+ -...+...+.....+.|.+|...... ...+++.- ...+..++|.+ ..++. +..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~--~~i~v-~~~- 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG--NKICV-GTS- 156 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC--CEEEE-EeC-
Confidence 111222333333 11233333334445688888875431 23344433 35678888873 33443 444
Q ss_pred CeEEEEeCCCCceEEeecCC------------CCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeee--EEeCCCCceee
Q 024372 168 GGVRLWDARSGKIVQTLETK------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYNMPCNTESA 233 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~------------~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~--~~~~~~~~~~~ 233 (268)
+...+.|+.++.....+... .....+.--+++.++++-++ .-.+.|.. ++..+ .+.....+..+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~-~g~fv~~~-G~~~r~~~i~W~~~p~~~ 234 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN-IGVFVNKN-GEPSRKSTIQWSSAPQSV 234 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc-eEEEEcCC-CCcCcccEEEcCCchhEE
Confidence 56888899987665443211 11233333344566665443 33333442 22222 34444555566
Q ss_pred EEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 234 ~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
.+..+ ++++.+.+ .|.+|++.+|+.+.+.
T Consensus 235 ~~~~p---yli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 235 AYSSP---YLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred EEECC---EEEEECCC-EEEEEECcCCcEEEEE
Confidence 65442 55555554 4999999999998864
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.25 E-value=0.00017 Score=64.58 Aligned_cols=180 Identities=10% Similarity=0.041 Sum_probs=113.0
Q ss_pred ecCCCcEEE-EeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc
Q 024372 69 LDANALFSA-SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS 147 (268)
Q Consensus 69 ~~~~~~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 147 (268)
+++|++.+. +.-..+.+-+.|..+.+...++........+.++++++++++.+++... +...........+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~-------G~tl~em~a~e~d~ 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEE-------GVTLAEMMAAERDW 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCccc-------CcceeeeccccCce
Confidence 345665442 3334456667787777776666655555678899999999888754321 11111110111111
Q ss_pred EEEE------EEeCCCCcEEEEeeCCCeEEEEeCCC-----CceEEeecCCCCEEEEEECCCCcEEEEeC--CCeEEEEe
Q 024372 148 IRTV------AWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWD 214 (268)
Q Consensus 148 v~~~------~~~~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~v~~wd 214 (268)
+..+ .+.+++...++ .++.|.+.|.++ .+.+..+........+.++|||+++..+. +.+|.+.|
T Consensus 273 ~vvfni~~iea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 273 VVVFNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred EEEEchHHHHHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 1111 12334544443 247899999998 45667777666678999999999987653 68999999
Q ss_pred CCCcee------------eeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCC
Q 024372 215 ANHFGL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 215 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
+.+.+. +........+.-..|.+ .|..+.+-..|+.|-.||+.+
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 977542 33333333444556655 477888889999999999864
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=9.8e-05 Score=66.71 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=103.2
Q ss_pred EEeeecCCCeeeEEEecC----------CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC-----Cc
Q 024372 10 LVCHGHSRPVVDLFYSPI----------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-----AL 74 (268)
Q Consensus 10 ~~~~~h~~~v~~~~f~~~----------~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~-----~~ 74 (268)
+.|..|.+.|.-..+.-. ..+|.|+++||.||++.|-...+.+...++. -.-++.+++++|+ .+
T Consensus 52 ~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh
Confidence 344567777765554311 1259999999999999999888877665554 2467889999998 56
Q ss_pred EEEEeeCCCcEEEEeCCC--CC-eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCc-----c
Q 024372 75 FSASGSADFTAKLWDALT--GD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----G 146 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~--~~-~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~-----~ 146 (268)
++++||.-| +.++.-+= +. .+..-+...+|.++.|. |+++|=++.+| +++||.+.+.........+. .
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~ 206 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPEL 206 (846)
T ss_pred heeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCccc
Confidence 789999888 77765321 11 22112345689999986 66888887776 69999876543222111111 1
Q ss_pred cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
--..+.|.+++ .++-|.. .+|+|..++.
T Consensus 207 fpphl~W~~~~--~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 207 FPPHLHWQDED--RLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CCCceEecCCC--eEEEecC-CeEEEEEEec
Confidence 12356776544 3444555 5899998873
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00016 Score=65.33 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=131.3
Q ss_pred EeeecCCCeeeEEEecCC-------C--CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecC---CC-cEEE
Q 024372 11 VCHGHSRPVVDLFYSPIT-------P--DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSA 77 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~-------~--dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~---~~-~~l~ 77 (268)
.++-|...|+.+.|.|.. | .--.||++-..|.|.+||...+..+..|+.|..+|..++|-+ ++ .+|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 345688999999998732 1 123567777888999999999998889999999999999864 34 4566
Q ss_pred EeeCCCcEEEEeCCCCCeeeeeccCC-eEEEEEECC-CCCEEEEeeCCCeEEEEEC-CCC--CCCC---eEecCCcc---
Q 024372 78 SGSADFTAKLWDALTGDEKHSFEHKH-IVRACAFSE-DTHLLLTGGFEKILRIFDL-NRP--DAPP---REVGNSSG--- 146 (268)
Q Consensus 78 s~s~D~~v~iw~~~~~~~~~~~~~~~-~v~~v~~~~-~~~~l~s~~~d~~i~~~d~-~~~--~~~~---~~~~~~~~--- 146 (268)
.-..-.++-+|+..+|.....+.-.. ...|..+.| |.+.+..-+..|.+-+-+. ... .... +....|..
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH 209 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence 66667899999999999877765433 455677888 5555554445555544432 111 1111 11111111
Q ss_pred ---------c-----------E--EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC-CCEEEEEECCCC--cE
Q 024372 147 ---------S-----------I--RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDG--RY 201 (268)
Q Consensus 147 ---------~-----------v--~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s~~g--~~ 201 (268)
. . -.++|+|.-.+++..... +.+.++|++-..++...... +.+.-+.+-|++ ..
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 0 0 123455554554443344 78999999988888776532 334445555554 45
Q ss_pred EEE-eCCCeEEEEeCCC
Q 024372 202 ITT-ADGSSVKFWDANH 217 (268)
Q Consensus 202 l~~-~~~~~v~~wd~~~ 217 (268)
+.+ ..+|.+.+|--+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 666 4688999987543
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00091 Score=60.13 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=78.4
Q ss_pred CcEEEEeCCC-----CCeeeeeccCCeEEEEEECCCCCEEEEee-CCCeEEEEECCCCCC-----------CCeEecCCc
Q 024372 83 FTAKLWDALT-----GDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDA-----------PPREVGNSS 145 (268)
Q Consensus 83 ~~v~iw~~~~-----~~~~~~~~~~~~v~~v~~~~~~~~l~s~~-~d~~i~~~d~~~~~~-----------~~~~~~~~~ 145 (268)
+.|.+.|..+ ......+..+.....+.++||+++++.++ .+.++.+.|+.+.+. ...+..--.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4577777776 34566666777778899999999777654 689999999875321 011111112
Q ss_pred ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC----------CceEEeecCCCCEEEEEE------CCCCcEEEEeC
Q 024372 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARS----------GKIVQTLETKSPVTSAEV------SRDGRYITTAD 206 (268)
Q Consensus 146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~v~~~~~------s~~g~~l~~~~ 206 (268)
++ ...+|.+++ +.+++..-|..|-.||+.+ ...+..+..+..+-.+.. .|+|++|++..
T Consensus 376 GP-LHTaFDg~G-~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 376 GP-LHTAFDGRG-NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred Cc-ceEEECCCC-CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 23 244666554 5777778889999999976 234444544433333333 68999988754
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00039 Score=60.73 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=101.0
Q ss_pred CCeEEEeeCccCcEEEEEecCCCcEEEEee--CC--CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEE-eeCCCe
Q 024372 51 GDWIGTFEGHKGAVWSCCLDANALFSASGS--AD--FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKI 125 (268)
Q Consensus 51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s--~D--~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s-~~~d~~ 125 (268)
|.....+..-...+..-.|+++++.++.-+ .. ..+.++++.++...........-..-+|+|||+.|+- ...|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444444443445666778888887654332 22 3588899988887666654444555679999987764 456666
Q ss_pred EEEE--ECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCe--EEEEeCCCCceEE-eecCCCCEEEEEECCCCc
Q 024372 126 LRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQ-TLETKSPVTSAEVSRDGR 200 (268)
Q Consensus 126 i~~~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~-~~~~~~~v~~~~~s~~g~ 200 (268)
..+| |+.... .....+..+.-..=.|+|++..++.++...|. |.+.|...+...+ +....... .-.++|||+
T Consensus 262 ~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~ 338 (425)
T COG0823 262 PDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGD 338 (425)
T ss_pred ccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCC
Confidence 5555 655433 22222222222344678999988777766665 5555666555433 22332222 678899999
Q ss_pred EEEEeC--CCe--EEEEeCCCceeeeEEe
Q 024372 201 YITTAD--GSS--VKFWDANHFGLVKGYN 225 (268)
Q Consensus 201 ~l~~~~--~~~--v~~wd~~~~~~~~~~~ 225 (268)
+++... ++. |.+.|+.....++...
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc
Confidence 886432 343 5566665544333333
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.12 E-value=0.0021 Score=53.70 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=128.7
Q ss_pred CCCcEEEEE----------eCCCCeEEeeCCCCCeEEEeeC---ccCcE----EEEEecCCCcEEEEee--CCCcEEEEe
Q 024372 29 PDGFFLVSA----------SKDSSPMLRNGETGDWIGTFEG---HKGAV----WSCCLDANALFSASGS--ADFTAKLWD 89 (268)
Q Consensus 29 ~dg~~l~s~----------s~d~~i~iw~~~~~~~~~~~~~---h~~~V----~~~~~~~~~~~l~s~s--~D~~v~iw~ 89 (268)
|||+.+.++ -+.-.|.+||..+-+...++.- |...+ ...+++.++++++.-. =-..|-|-|
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD 124 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence 588888875 4555678899998877765531 22211 1223445555443221 123455555
Q ss_pred CCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE----ecCCcccEE-EEEEeCCCCcEEEEe
Q 024372 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIR-TVAWLHSDQTILSSC 164 (268)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~~~~v~-~~~~~~~~~~~~~~~ 164 (268)
+...+.+..+..+......-..+ .-+.+-|.||.+-...+.......+. +.....++. .-++...+..++-.
T Consensus 125 l~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~- 201 (342)
T PF06433_consen 125 LAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV- 201 (342)
T ss_dssp TTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-
T ss_pred CCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-
Confidence 55555555555555444333333 34777788888887777633221111 111122222 22333333333333
Q ss_pred eCCCeEEEEeCCCCce--EEeecC-----------CCCEEEEEECCCC-cEEE-Ee--CC-------CeEEEEeCCCcee
Q 024372 165 TDSGGVRLWDARSGKI--VQTLET-----------KSPVTSAEVSRDG-RYIT-TA--DG-------SSVKFWDANHFGL 220 (268)
Q Consensus 165 ~~d~~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~s~~g-~~l~-~~--~~-------~~v~~wd~~~~~~ 220 (268)
+..|.|+--|+..... ...++. .+...-+++++.. ++.+ .. .. ..|-++|+.+.+.
T Consensus 202 Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr 281 (342)
T PF06433_consen 202 SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR 281 (342)
T ss_dssp BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence 3558888888865543 222221 1345667887654 4433 22 11 2588889999999
Q ss_pred eeEEeCCCCceeeEEcCCCCCEEEe-ccCCCeEEEEECCCCcEEeec
Q 024372 221 VKGYNMPCNTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~-gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+..+.......++..+.++.-+|++ ...++.+.+||..+|+++...
T Consensus 282 v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 282 VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 9888876666677777655556655 456899999999999998764
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.10 E-value=0.00021 Score=62.63 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=74.6
Q ss_pred EEEEecCCC-cEEE----EeeCCCcEE----EEeCCCCCe----eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372 65 WSCCLDANA-LFSA----SGSADFTAK----LWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (268)
Q Consensus 65 ~~~~~~~~~-~~l~----s~s~D~~v~----iw~~~~~~~----~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~ 131 (268)
..+.|+... ..+. +.+.+|.+. +|++..++. +..++.+..+.+++++|+...++.|+.||.|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 456666432 2232 334455433 466655543 334567888999999999999999999999999998
Q ss_pred CCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCc
Q 024372 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179 (268)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 179 (268)
..+... .....-..+.++|.|++. +++.|++.|.+.+||..-..
T Consensus 289 ~~~~t~---~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 289 TRGVTL---LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCCeee---eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence 654222 112233457789988765 56666777999999987543
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=9e-07 Score=77.60 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=121.1
Q ss_pred EEEEEec--CCCcEEEEeeCCCcEEEEeCCCCC-e--eeeeccCCeEEEEEECC-CCCEEEEee----CCCeEEEEECCC
Q 024372 64 VWSCCLD--ANALFSASGSADFTAKLWDALTGD-E--KHSFEHKHIVRACAFSE-DTHLLLTGG----FEKILRIFDLNR 133 (268)
Q Consensus 64 V~~~~~~--~~~~~l~s~s~D~~v~iw~~~~~~-~--~~~~~~~~~v~~v~~~~-~~~~l~s~~----~d~~i~~~d~~~ 133 (268)
+.+++.. .+..+++.|..+|.|-+-...... . ..+..+..+.++++|++ |.++||.|. .|..+.+||+++
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 4444433 344677889999999887664322 1 22234566889999988 667887763 345689999875
Q ss_pred C----CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-ceEEeecCCCCEEEEEECC-CCcEEEEeCC
Q 024372 134 P----DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSR-DGRYITTADG 207 (268)
Q Consensus 134 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 207 (268)
. ................++|..+.+ ++.+|...+.+.++|+|.. .....+.. ..+..+.+.| .+.|+.+..+
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred ccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecccc
Confidence 4 111122221223445788885444 5555555589999999832 22222221 2366788899 7888888789
Q ss_pred CeEEEEe-CCCce-eeeEEeCCC-----CceeeEEcCCCCCEEEeccCC-CeEEEEECC
Q 024372 208 SSVKFWD-ANHFG-LVKGYNMPC-----NTESASLEPKLGNIFIAGGED-MWVHVFDFH 258 (268)
Q Consensus 208 ~~v~~wd-~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~gs~d-~~i~~wd~~ 258 (268)
+.|-+|| .++.+ ++....... ....++++|....++++.+.| +.|++||+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 9999999 44432 222222222 245778888767778887766 479999874
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.08 E-value=0.00023 Score=65.30 Aligned_cols=179 Identities=19% Similarity=0.227 Sum_probs=120.8
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEEEEE
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA 109 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~~v~ 109 (268)
+..++-|+.-..+...|..+.+..+...--.+.|.-+. .+++++.+|...|+|.+-|.++.+.++++. |...+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 44566677777777788888776666544344454443 357888889999999999999999988885 7777755
Q ss_pred ECCCCCEEEEeeCC---------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC-Cc
Q 024372 110 FSEDTHLLLTGGFE---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GK 179 (268)
Q Consensus 110 ~~~~~~~l~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~ 179 (268)
|.-+|++|++++.. ..+++||++.-+... -+..+.++ .-+.|.|.-...++.++..|...+-|..+ ..
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 56678899998754 457899987544321 11122222 33556665555555555668999988433 12
Q ss_pred e---EEeecC-CCCEEEEEECCCCcEEEEeC-CCeEEEEeC
Q 024372 180 I---VQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDA 215 (268)
Q Consensus 180 ~---~~~~~~-~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~ 215 (268)
. ++.+.. ...+...+++++|..++.++ ++.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222 33488999999999998774 789999973
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.05 E-value=0.0011 Score=61.66 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=94.8
Q ss_pred CcEEEEE-eCCCCeEEeeCCCCCeEEEeeCccCc-EEEEEecC-----CCcEEEEeeCCCcEEEEeCCCCC--eee----
Q 024372 31 GFFLVSA-SKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDA-----NALFSASGSADFTAKLWDALTGD--EKH---- 97 (268)
Q Consensus 31 g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~h~~~-V~~~~~~~-----~~~~l~s~s~D~~v~iw~~~~~~--~~~---- 97 (268)
.++|+-- .....+.-.|++.|+.+..+..|... |..++-.. .......|=.+..+..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 33456666799999999999988754 65543211 11122345567889999987533 222
Q ss_pred eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 98 ~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
.+..+....|++-+.+| .+|.|+.+|.||+||- .+..-...+.....+|..|..+.+|.++|++|. ..|.|.|+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 22234456777777777 5788999999999993 333223344455789999999999999999983 68888886
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00036 Score=60.91 Aligned_cols=191 Identities=17% Similarity=0.185 Sum_probs=110.2
Q ss_pred eeecEEeeecCCCeeeEEEecCCCCCcEEEEE---eCC-CCeEEeeCCCCC--eEEEeeCccCcEEEEEecCCCcEEE-E
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSA---SKD-SSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSA-S 78 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~~dg~~l~s~---s~d-~~i~iw~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~-s 78 (268)
.+....+..-...+..-+|+| +++.++-. ... ..+.++++.+++ .+.++.++.. .-+|+|||+.++ +
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~---~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~ 255 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSP---DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFS 255 (425)
T ss_pred CcceeEecccCcceeccccCc---CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEE
Confidence 344444433344555666765 55554433 233 346778888875 3445555543 346999998764 5
Q ss_pred eeCCCcEEEE--eCCCCCeeeeeccCCeEE-EEEECCCCCEEEEee-CCCe--EEEEECCCCCCCCeEecCCcccEEEEE
Q 024372 79 GSADFTAKLW--DALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGG-FEKI--LRIFDLNRPDAPPREVGNSSGSIRTVA 152 (268)
Q Consensus 79 ~s~D~~v~iw--~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~s~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~ 152 (268)
...|+...|| |+......+ +.+...+. .=.|+|+|+.++-.+ ..|. |.+++.+... .+......+.-..-.
T Consensus 256 ~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~~p~ 332 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNSNPV 332 (425)
T ss_pred ECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCcCcc
Confidence 6677765555 776655333 44333332 345899999877654 3444 4444554332 233322222222557
Q ss_pred EeCCCCcEEEEeeCCCe--EEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe
Q 024372 153 WLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA 205 (268)
Q Consensus 153 ~~~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 205 (268)
|+|++..++..+..+|. |-+.|+.++..++.+........-.+.|+|+.+...
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 78988887666644455 666777666655555544445566788899887644
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=2.7e-05 Score=42.28 Aligned_cols=39 Identities=41% Similarity=0.675 Sum_probs=34.6
Q ss_pred CCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 51 ~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
++++..+..|...|.+++|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677888999999999999989999999999999996
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=2.5e-06 Score=74.92 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=106.4
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEE----eCCCCeEEeeCCCC--Ce--EEEeeC-ccCcEEEEEecCCCcEEEEeeCC
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSA----SKDSSPMLRNGETG--DW--IGTFEG-HKGAVWSCCLDANALFSASGSAD 82 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~----s~d~~i~iw~~~~~--~~--~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D 82 (268)
..+|..+.++++|++. |.+.||+| -.|..+.|||..++ .. .-.|.+ -.....+++|-.+.+.+.+|...
T Consensus 98 tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred cccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 3578889999999985 67788877 34567899998876 11 112222 33445577888778888889888
Q ss_pred CcEEEEeCCCCCeeeeeccCCeEEEEEECC-CCCEEEEeeCCCeEEEEE-CCCCCCCCeEecCCcc----cEEEEEEeCC
Q 024372 83 FTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSG----SIRTVAWLHS 156 (268)
Q Consensus 83 ~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~s~~~d~~i~~~d-~~~~~~~~~~~~~~~~----~v~~~~~~~~ 156 (268)
..+.++|+.........-....+..+...| .+.++++- .|+.|-+|| .+.-+.+.+.+.+... .+..++|+|-
T Consensus 176 r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 899999986332211111333566677778 67777664 499999999 3332322222222222 3788999987
Q ss_pred CCcEEEEeeC-CCeEEEEeCC
Q 024372 157 DQTILSSCTD-SGGVRLWDAR 176 (268)
Q Consensus 157 ~~~~~~~~~~-d~~i~iwd~~ 176 (268)
..-+++++.. .++|+++|++
T Consensus 255 rtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CcchhhhhccCcceEEEeccc
Confidence 6556555544 4799999986
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.90 E-value=0.0022 Score=44.52 Aligned_cols=102 Identities=21% Similarity=0.153 Sum_probs=67.1
Q ss_pred eeeEEEecCCCCC-cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372 19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (268)
Q Consensus 19 v~~~~f~~~~~dg-~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 97 (268)
|+++++.++..|| +.|+.||.|..||+|+-. +.+.++.- .+.|..++-... ..++.+-.+|+|-+|+-. ....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 6788888766543 679999999999999754 56666664 356666665554 457888899999998752 2223
Q ss_pred eeccCCeEEEEEE-CCC--C-CEEEEeeCCCeE
Q 024372 98 SFEHKHIVRACAF-SED--T-HLLLTGGFEKIL 126 (268)
Q Consensus 98 ~~~~~~~v~~v~~-~~~--~-~~l~s~~~d~~i 126 (268)
....++.+.++.+ ..+ | .-|++|-.+|.|
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3334444555544 223 2 356777777765
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.85 E-value=0.015 Score=49.90 Aligned_cols=236 Identities=16% Similarity=0.153 Sum_probs=121.2
Q ss_pred CCCcEEEEE---------eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372 29 PDGFFLVSA---------SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (268)
Q Consensus 29 ~dg~~l~s~---------s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (268)
|||++++.. +..+..-++|+.+++...... ....+....|+|++..+|-.. ++.|.+++..++...+.-
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 577777764 334566788999886554333 356788899999999987764 678999988766433211
Q ss_pred cc------------------CCeEEEEEECCCCCEEEEeeCC-CeEE---------------------------------
Q 024372 100 EH------------------KHIVRACAFSEDTHLLLTGGFE-KILR--------------------------------- 127 (268)
Q Consensus 100 ~~------------------~~~v~~v~~~~~~~~l~s~~~d-~~i~--------------------------------- 127 (268)
.. -..-..+.||||++.|+....| ..++
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~ 159 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS 159 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence 10 0112467899999888875433 2222
Q ss_pred --EEECCCCCCCCeEe----cCCcccEEEEEEeCCCCcE-EEEeeCCC---eEEEEeCCCCceEEeec--CCCC---EEE
Q 024372 128 --IFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTI-LSSCTDSG---GVRLWDARSGKIVQTLE--TKSP---VTS 192 (268)
Q Consensus 128 --~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~~~~~~d~---~i~iwd~~~~~~~~~~~--~~~~---v~~ 192 (268)
++|+.+++...... ......+..+.|.+++..+ +.....+. .+.+.|+.++++...+. .... -..
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 22332222110000 1123346678888777633 33333322 46667887776533221 2111 123
Q ss_pred EEEC-CCCc-EEEE-eCCC--eEEEEeCCCceeeeEEeCCCCce-eeEEcCCCCCEEEeccCC----CeEEEEECCCCcE
Q 024372 193 AEVS-RDGR-YITT-ADGS--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGED----MWVHVFDFHTGEQ 262 (268)
Q Consensus 193 ~~~s-~~g~-~l~~-~~~~--~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gs~d----~~i~~wd~~~g~~ 262 (268)
..+. +++. ++.. ..+| .|.+.+.........-...-.+. ...+....+.++.+|..+ ..++.-++..+..
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 4443 5554 4433 3444 56666776554222112222232 344455445555566553 3566666662334
Q ss_pred Eeec
Q 024372 263 IAIT 266 (268)
Q Consensus 263 ~~~~ 266 (268)
+..+
T Consensus 320 ~~~L 323 (353)
T PF00930_consen 320 PKCL 323 (353)
T ss_dssp EEES
T ss_pred eEec
Confidence 4443
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.77 E-value=0.0083 Score=57.16 Aligned_cols=197 Identities=17% Similarity=0.125 Sum_probs=121.4
Q ss_pred CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC----CCCCCC
Q 024372 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRPDAP 137 (268)
Q Consensus 62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~----~~~~~~ 137 (268)
+.|.++.|-.+..-++-+..+|.|.+-|..+......-.....|.+.+|+||.++++..+.++++-+-+- -..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 5788888877766666666788888888887766555556678999999999999998888777654331 110100
Q ss_pred ------------------CeEecCCc---------------------ccEEEEEEeCCCCcEEEE----eeCCCeEEEEe
Q 024372 138 ------------------PREVGNSS---------------------GSIRTVAWLHSDQTILSS----CTDSGGVRLWD 174 (268)
Q Consensus 138 ------------------~~~~~~~~---------------------~~v~~~~~~~~~~~~~~~----~~~d~~i~iwd 174 (268)
...+.+.. +.-+.|.|-.+++.+.++ ..+.+.|++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 00111100 112347887666654432 23337899999
Q ss_pred CCCCceEEeecCC-CCEEEEEECCCCcEEEEe----CCCeEEEEeCC---CceeeeEEeCCCC-ceeeEEcCCCCCEEEe
Q 024372 175 ARSGKIVQTLETK-SPVTSAEVSRDGRYITTA----DGSSVKFWDAN---HFGLVKGYNMPCN-TESASLEPKLGNIFIA 245 (268)
Q Consensus 175 ~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~----~~~~v~~wd~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (268)
-+ |..-.+-... ..-.+++|-|.|..+++- +++.|.+|.-. .++-.-.+..... +..+.|.. +++.|+.
T Consensus 229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv 306 (1265)
T KOG1920|consen 229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAV 306 (1265)
T ss_pred cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceee
Confidence 76 4322211111 223578999999888763 45679888742 2221222333333 55677776 5888887
Q ss_pred ---ccCCCeEEEEECCCC
Q 024372 246 ---GGEDMWVHVFDFHTG 260 (268)
Q Consensus 246 ---gs~d~~i~~wd~~~g 260 (268)
..+...|++|-+.+.
T Consensus 307 ~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecccccceEEEEEecCe
Confidence 666778999987653
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0074 Score=53.06 Aligned_cols=145 Identities=13% Similarity=0.158 Sum_probs=78.1
Q ss_pred EeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEE-ECCCC
Q 024372 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF-DLNRP 134 (268)
Q Consensus 56 ~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~-d~~~~ 134 (268)
.+....-....++++|++++++. +.||.-.|+.......... ..-....|.+.+ .+|+-...+.|+++ +...
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence 34334455778999999998766 4577777777433333222 223345677744 46666668889996 4322
Q ss_pred CCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEe
Q 024372 135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (268)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd 214 (268)
+. ...+.. ...+..+ +. |. ++...++ +.|.+||+.+++.+..+... +|..+.|+++|.+++...+..+.+.+
T Consensus 100 ~~-~k~i~~-~~~~~~I--f~-G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 100 EV-VKSIKL-PFSVEKI--FG-GN-LLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -T-T------SS-EEEE--E--SS-SEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred cc-ceEEcC-CcccceE--Ec-Cc-EEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 11 111111 1123332 33 44 4444444 58999999999999999864 38999999999998876666777765
Q ss_pred C
Q 024372 215 A 215 (268)
Q Consensus 215 ~ 215 (268)
.
T Consensus 172 ~ 172 (443)
T PF04053_consen 172 Y 172 (443)
T ss_dssp E
T ss_pred e
Confidence 4
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.011 Score=54.47 Aligned_cols=187 Identities=17% Similarity=0.251 Sum_probs=104.6
Q ss_pred EecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCe-EEEEEECCCCCEEEEeeCCC-----eEEEEECCCCC--CCC
Q 024372 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPD--APP 138 (268)
Q Consensus 68 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~~d~~~~~--~~~ 138 (268)
++++.+..+|-|+.||.|-+.+-. .+..+.+. ++.. |..+..-.+...|++.+.|. .+++|+++..+ .++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 457778888999999988776632 12213332 2222 44343233335666655443 58999986431 101
Q ss_pred e------Eec----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEe--C-CC-C-ceEEeecCCCCEEEEEECCCCcE-E
Q 024372 139 R------EVG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-RS-G-KIVQTLETKSPVTSAEVSRDGRY-I 202 (268)
Q Consensus 139 ~------~~~----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd--~-~~-~-~~~~~~~~~~~v~~~~~s~~g~~-l 202 (268)
+ ... ....++.+++.+.+ -..++.|..+|.|..+- + |. + +.........+|..+++..+++. +
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 1 111 12345667776554 45677788889988873 2 11 1 22233445678999999988876 4
Q ss_pred EEeCCCeEEEEeCCCcee-eeEEeCCC-CceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 203 TTADGSSVKFWDANHFGL-VKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 203 ~~~~~~~v~~wd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
..+.-..|.+|.+....+ ++....+. ......+++..++ |++|+.. .+++|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd 243 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSD 243 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCC
Confidence 445556899999875442 23333322 2233344443333 5544433 38888875
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.70 E-value=0.022 Score=50.14 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=106.8
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
...-....+.++| +|+.++. ..||.-.|+.....+-... +.-....|.+.+++ |.-....+|+++.-...
T Consensus 30 ~~~~~p~~ls~np---ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 30 SCEIYPQSLSHNP---NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRY-AVLESSSTIKIYKNFKN 99 (443)
T ss_dssp E-SS--SEEEE-T---TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEE-EEE-TTS-EEEEETTEE
T ss_pred CCCcCCeeEEECC---CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccE-EEEECCCeEEEEEcCcc
Confidence 3444677999996 7777766 7777777777444333222 23344568876664 55555888999743233
Q ss_pred CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 94 ~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
.....+..+..+..+- . |.+|+..+.+ .|.+||+.+.+ ..+.+.. .++..+.|++++..+++.+ + ..+.|+
T Consensus 100 ~~~k~i~~~~~~~~If-~--G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v--~~vk~V~Ws~~g~~val~t-~-~~i~il 170 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIF-G--GNLLGVKSSD-FICFYDWETGK-LIRRIDV--SAVKYVIWSDDGELVALVT-K-DSIYIL 170 (443)
T ss_dssp -TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE--S--SEEEE
T ss_pred ccceEEcCCcccceEE-c--CcEEEEECCC-CEEEEEhhHcc-eeeEEec--CCCcEEEEECCCCEEEEEe-C-CeEEEE
Confidence 3323343333344442 2 7777766544 89999998653 3344432 2478999998877665554 4 577787
Q ss_pred eCCCC-----------ceEEee-cCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCC
Q 024372 174 DARSG-----------KIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN 241 (268)
Q Consensus 174 d~~~~-----------~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (268)
+.... ..+..+ +....|.+..|..+ -++-+... .++++=......++.+. .....+...+. ..
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~~i~~ld--~~~yllgy~~~-~~ 245 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYLVNGETGIIAHLD--KPLYLLGYLPK-EN 245 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEEETTEEEEEEE-S--S--EEEEEETT-TT
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcceEEEcC--CceEEEEEEcc-CC
Confidence 65433 123322 22456888999888 55556555 78774433333333332 23334444442 23
Q ss_pred EEEeccCCCeEEEEEC
Q 024372 242 IFIAGGEDMWVHVFDF 257 (268)
Q Consensus 242 ~~~~gs~d~~i~~wd~ 257 (268)
.+...-.|..|..+.+
T Consensus 246 ~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 246 RLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEE-TT--EEEEE-
T ss_pred EEEEEECCCCEEEEEE
Confidence 4555555555655544
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.68 E-value=0.027 Score=48.03 Aligned_cols=238 Identities=18% Similarity=0.234 Sum_probs=109.9
Q ss_pred eEEE--ecCCCCCc-EEEEEeCCCCeEEe--eCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 21 DLFY--SPITPDGF-FLVSASKDSSPMLR--NGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 21 ~~~f--~~~~~dg~-~l~s~s~d~~i~iw--~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
.+.| ++.++||+ +|+.+..|+.-.+| |+.+++..+--.+-........+++++..++-......|+--|+.+.+.
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 4555 33557884 55555557766665 7888875543332212233345678887776666667888889999887
Q ss_pred eeeeccC-CeEEEEEE--CCCCCEEEEeeC---CC-------------------eEEEEECCCCCCCCeEecCCcccEEE
Q 024372 96 KHSFEHK-HIVRACAF--SEDTHLLLTGGF---EK-------------------ILRIFDLNRPDAPPREVGNSSGSIRT 150 (268)
Q Consensus 96 ~~~~~~~-~~v~~v~~--~~~~~~l~s~~~---d~-------------------~i~~~d~~~~~~~~~~~~~~~~~v~~ 150 (268)
...+..+ ..+....| +.++..++-.-. |. .|..-|+.+++ ...+......+..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGH 192 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccC
Confidence 6665533 33333334 445555432210 00 12222443332 2222233456778
Q ss_pred EEEeCCCCcEEEEeeCC---C-eEEEEeCCC-CceEEeecCCCC---EEEEEECCCCcEEEE-e-----CCCeEEEEeCC
Q 024372 151 VAWLHSDQTILSSCTDS---G-GVRLWDARS-GKIVQTLETKSP---VTSAEVSRDGRYITT-A-----DGSSVKFWDAN 216 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d---~-~i~iwd~~~-~~~~~~~~~~~~---v~~~~~s~~g~~l~~-~-----~~~~v~~wd~~ 216 (268)
+.++|.++.+++-|-+. . .-|||-+++ +..++.+..+.+ +.-=.|.|||..+.= + .+..|.-.|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 89999999998887552 1 237786643 444444433222 233347899976531 1 13457777887
Q ss_pred CceeeeEEeCCCCceeeEE-cCCCCCEEEeccCC----------------CeEEEEECCCCcEE
Q 024372 217 HFGLVKGYNMPCNTESASL-EPKLGNIFIAGGED----------------MWVHVFDFHTGEQI 263 (268)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gs~d----------------~~i~~wd~~~g~~~ 263 (268)
+.+.......+ .+..+ +..+|++||-=|.| -.|++++++.++..
T Consensus 273 t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 273 TGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp T--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred CCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 76543333332 22222 33478888753333 26888888877654
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.65 E-value=0.035 Score=48.59 Aligned_cols=240 Identities=16% Similarity=0.113 Sum_probs=122.7
Q ss_pred eEEEecCCCCCcEEEEE-eCCC----CeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeC-----------CC
Q 024372 21 DLFYSPITPDGFFLVSA-SKDS----SPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSA-----------DF 83 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~-s~d~----~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~-----------D~ 83 (268)
.+.+..++|||++||-+ +..| ++++.|+.+|+.+.. +..-.. ..+.|.+++..+..... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34333445799988866 4444 488999999986643 232111 12889999776544432 23
Q ss_pred cEEEEeCCCCCee--eeec--cCCe-EEEEEECCCCCEEEEee---CC-CeEEEEECCCC---CCCCeEecC-CcccEEE
Q 024372 84 TAKLWDALTGDEK--HSFE--HKHI-VRACAFSEDTHLLLTGG---FE-KILRIFDLNRP---DAPPREVGN-SSGSIRT 150 (268)
Q Consensus 84 ~v~iw~~~~~~~~--~~~~--~~~~-v~~v~~~~~~~~l~s~~---~d-~~i~~~d~~~~---~~~~~~~~~-~~~~v~~ 150 (268)
.|+.|++.+.... ..++ .... ...+..++++++++... .+ ..+.+.|+... ......+.. ..+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776543 3333 2223 55678899999877532 22 45677787653 222233322 2333333
Q ss_pred EEEeCCCCcEEEEe--eCCCeEEEEeCCCCce---E-EeecCCCC--EEEEEECCCCcEEEEeCC--CeEEEEeCCCcee
Q 024372 151 VAWLHSDQTILSSC--TDSGGVRLWDARSGKI---V-QTLETKSP--VTSAEVSRDGRYITTADG--SSVKFWDANHFGL 220 (268)
Q Consensus 151 ~~~~~~~~~~~~~~--~~d~~i~iwd~~~~~~---~-~~~~~~~~--v~~~~~s~~g~~l~~~~~--~~v~~wd~~~~~~ 220 (268)
+... .+..++.+. ...+.|.--++..... . -.+.+... +..+....+.-++..-.+ ..|+++|+.....
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4333 333334442 1224566667776542 2 22333332 444444333322222233 4789999983344
Q ss_pred eeEEeCCCCce--eeEEcCCCCCEEEeccC---CCeEEEEECCCCcEE
Q 024372 221 VKGYNMPCNTE--SASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQI 263 (268)
Q Consensus 221 ~~~~~~~~~~~--~~~~~~~~~~~~~~gs~---d~~i~~wd~~~g~~~ 263 (268)
......+.... .....+....+++..+. =..++.||+.+|+.-
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44455443332 22223434555554432 467999999988853
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.61 E-value=0.0037 Score=58.20 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=90.2
Q ss_pred EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC-------CCEEEEeeCCCeEEEEECCCCCCCCeE----ecCC
Q 024372 76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPRE----VGNS 144 (268)
Q Consensus 76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~-------~~~l~s~~~d~~i~~~d~~~~~~~~~~----~~~~ 144 (268)
|........|+-.|+++++.+..+....-+....+.|+ ..-.+.|-.++.+..||++-....... ....
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 34445667888999999999998875443333344442 223456777888999998754321111 1122
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-EEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
.....|++-..+ ++ ++.|+.+|.||+|| +.|.. ...++. ..+|..+.++.||+++++.-+..+.+.+.
T Consensus 577 ~~~Fs~~aTt~~-G~-iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTED-GY-IAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCC-ce-EEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 345667775544 44 44566779999999 44433 233443 57899999999999998887788888885
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.56 E-value=0.057 Score=48.48 Aligned_cols=193 Identities=16% Similarity=0.149 Sum_probs=106.4
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccC------cEE--EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCC
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKG------AVW--SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~------~V~--~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 103 (268)
..+..++.++.+.-.|..+|+.+=+++.... .+. .+++. ++..+..++.++.|+-+|..+++.+-.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 3567788889999899999986544332211 111 11121 22455667789999999999999877765332
Q ss_pred eE---EEEEECC--CCCEEEEee---------CCCeEEEEECCCCCCCCeEecCCc-------------------ccEE-
Q 024372 104 IV---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR- 149 (268)
Q Consensus 104 ~v---~~v~~~~--~~~~l~s~~---------~d~~i~~~d~~~~~~~~~~~~~~~-------------------~~v~- 149 (268)
.+ ..+.-+| .+.+++.++ .++.+.-+|..+++...+...... +.+.
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 0011122 123455543 356778888877665443322110 0010
Q ss_pred EEEEeCCCCcEEEEeeCCC------------------eEEEEeCCCCceEEeecCCC-CE------EEEEEC----CCCc
Q 024372 150 TVAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKS-PV------TSAEVS----RDGR 200 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~-~v------~~~~~s----~~g~ 200 (268)
..++.+.+..+++. +.++ .|.-.|.++|+.+-.++... .. ....+. -+|.
T Consensus 221 ~pa~d~~~g~V~vg-~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVG-TGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEE-CCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 12223334444444 3333 78889999999987764211 00 001111 2333
Q ss_pred ---EEE-EeCCCeEEEEeCCCceeeeEEeC
Q 024372 201 ---YIT-TADGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 201 ---~l~-~~~~~~v~~wd~~~~~~~~~~~~ 226 (268)
++. ++.++.+...|.++++.+-.+..
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 333 44578899999999988766543
No 346
>PHA02713 hypothetical protein; Provisional
Probab=97.52 E-value=0.0081 Score=54.71 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=98.4
Q ss_pred CeEEeeCCCCCeEE--EeeCccCcEEEEEecCCCcEEEEeeCC------CcEEEEeCCCCCeeeeeccCCe-EEEEEECC
Q 024372 42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKHSFEHKHI-VRACAFSE 112 (268)
Q Consensus 42 ~i~iw~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~~-v~~v~~~~ 112 (268)
.+..||..++++.. .+...... .+++ ..++.+.+.||.+ ..+..+|..++.-....+-+.+ -......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 45678888887653 22211111 1222 2356666777754 2356677765532111110111 01111123
Q ss_pred CCCEEEEeeCCC-----eEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCC-------------------
Q 024372 113 DTHLLLTGGFEK-----ILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS------------------- 167 (268)
Q Consensus 113 ~~~~l~s~~~d~-----~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d------------------- 167 (268)
++++.+.|+.++ .+..||..+..... ............+. -++ .+.+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECC-EEEEEeCCCccccccccccccccccccc
Confidence 577777887654 36778876432110 00111111111112 133 344433332
Q ss_pred ----CeEEEEeCCCCceE--EeecCCCCEEEEEECCCCcEEEEeCC------CeEEEEeCCC---ceeeeEEeCCCCcee
Q 024372 168 ----GGVRLWDARSGKIV--QTLETKSPVTSAEVSRDGRYITTADG------SSVKFWDANH---FGLVKGYNMPCNTES 232 (268)
Q Consensus 168 ----~~i~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~------~~v~~wd~~~---~~~~~~~~~~~~~~~ 232 (268)
+.+..||+++.+=. ..+.....-.+++...+.-|+++|.+ ..+..||.++ +..+.....+.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 24677887765421 11211111112232233334555432 2467888875 333333322222222
Q ss_pred eEEcCCCCCEEEeccCCC--eEEEEECCCCcE
Q 024372 233 ASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQ 262 (268)
Q Consensus 233 ~~~~~~~~~~~~~gs~d~--~i~~wd~~~g~~ 262 (268)
.+.. +|+++++||.|+ .+..||..+++-
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 2222 589999999888 788999877653
No 347
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.023 Score=46.10 Aligned_cols=186 Identities=17% Similarity=0.256 Sum_probs=108.6
Q ss_pred EEecCCCCCcEEEEEeCC-----CCeEEeeCCCC-CeEEEeeCccCcEEEEEecCCCcEEEEeeC------C-C------
Q 024372 23 FYSPITPDGFFLVSASKD-----SSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSA------D-F------ 83 (268)
Q Consensus 23 ~f~~~~~dg~~l~s~s~d-----~~i~iw~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~------D-~------ 83 (268)
.|+ +||.+|...-+| |.|-|||...+ ..+.++..|.-.-..+.+.+||..++-+.. | +
T Consensus 120 vfs---~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFS---PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccC---CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 466 599999877555 45678988754 467888888777778889999998765532 0 1
Q ss_pred -----cEEEEeCCCCCeee--eec---cCCeEEEEEECCCCCEEEEeeCCCeEEEE----ECCCCCCCCeEecC------
Q 024372 84 -----TAKLWDALTGDEKH--SFE---HKHIVRACAFSEDTHLLLTGGFEKILRIF----DLNRPDAPPREVGN------ 143 (268)
Q Consensus 84 -----~v~iw~~~~~~~~~--~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~----d~~~~~~~~~~~~~------ 143 (268)
.+.+-|..+++.+. ++. +...++.+...+|+.+.+.+-+.|.-.=+ -...+....+.+..
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~ 276 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA 276 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH
Confidence 12222222333222 111 33468888888888877665444431100 00000011111110
Q ss_pred -CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEE
Q 024372 144 -SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFW 213 (268)
Q Consensus 144 -~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~w 213 (268)
....|-+|+.+...+.+.+++-..+...+||..+|+.+..-.. ..+..++....| |.+++.++.++++
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-~daaGva~~~~g-f~vssg~G~~~~~ 345 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-PDAAGVAAAKGG-FAVSSGQGRIIFY 345 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-cccccceeccCc-eEEecCCceEEec
Confidence 1234667777777788888887778999999999998764332 122333333344 5566666677665
No 348
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.51 E-value=0.017 Score=52.68 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=114.1
Q ss_pred CCcEEEEEeCCC------CeEEeeCCCCCeEEEeeCccC-cEEEEEecCCCcEEEEeeCC------CcEEEEeCCCCCee
Q 024372 30 DGFFLVSASKDS------SPMLRNGETGDWIGTFEGHKG-AVWSCCLDANALFSASGSAD------FTAKLWDALTGDEK 96 (268)
Q Consensus 30 dg~~l~s~s~d~------~i~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~s~D------~~v~iw~~~~~~~~ 96 (268)
.+.+++.|+.+. ++..+|..++++.....-... ...++++ .++.+.+.||.| .++..||..+++=.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456677777773 556789888876543322222 1223333 345677889988 34556676655411
Q ss_pred eeec--cC-CeEEEEEECCCCCEEEEeeCCCe-----EEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-
Q 024372 97 HSFE--HK-HIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS- 167 (268)
Q Consensus 97 ~~~~--~~-~~v~~v~~~~~~~~l~s~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d- 167 (268)
...+ .. .....+ .-+|.+.+.|+.|+. +-.||..+.+...... ... .........-++.+.+.|+.+
T Consensus 363 ~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLT-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCc-ceeeeEEEEECCEEEEEcCcCC
Confidence 1111 00 011111 226778888998865 4466655432211110 111 122222222234455555433
Q ss_pred -----CeEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeCCC-----eEEEEeCCCceeeeEEeCCCCceeeEE
Q 024372 168 -----GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGS-----SVKFWDANHFGLVKGYNMPCNTESASL 235 (268)
Q Consensus 168 -----~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~ 235 (268)
+.+..||..+.+-...-+. ...-..++.-.+.-|+++|.++ .|..+|.++......-..+........
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 3578888887764332222 1122234444444455555433 478888876543322222222222222
Q ss_pred cCCCCCEEEeccCCC-----eEEEEECCCCcE
Q 024372 236 EPKLGNIFIAGGEDM-----WVHVFDFHTGEQ 262 (268)
Q Consensus 236 ~~~~~~~~~~gs~d~-----~i~~wd~~~g~~ 262 (268)
..-.+..+++||.|+ .|..||..+++-
T Consensus 519 ~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 222588899998874 577787766553
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00074 Score=59.77 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=71.4
Q ss_pred cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cCCeEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeE
Q 024372 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE 140 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~~~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~ 140 (268)
.|..+.|.|.-.++|.+-.+|.+-+..++ .+.+.+++ +...++ +++|.|||+.++.|-.||+|++-|++++......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 46667899998999999999988888887 66677777 666776 9999999999999999999999999887654443
Q ss_pred ecCCcccEEEEEEe
Q 024372 141 VGNSSGSIRTVAWL 154 (268)
Q Consensus 141 ~~~~~~~v~~~~~~ 154 (268)
.-.....|.++-|.
T Consensus 101 ~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 101 LFSVETDISKGIWD 114 (665)
T ss_pred ccccccchheeecc
Confidence 22334456666664
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0014 Score=60.15 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=110.7
Q ss_pred EecCCCcEEEEee----CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecC
Q 024372 68 CLDANALFSASGS----ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (268)
Q Consensus 68 ~~~~~~~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~ 143 (268)
+|+|...++|.++ +.|.|.|+- .++.+.+...-+-.+.+++|+|..-+|+.|-.-|.+.+|..++.+ .......
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccC
Confidence 5666666665443 457777773 244444443333345679999999899999999999999876533 2334456
Q ss_pred CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee---cC--CCC--EEEEEECCCCc-------EEEEeCCCe
Q 024372 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL---ET--KSP--VTSAEVSRDGR-------YITTADGSS 209 (268)
Q Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---~~--~~~--v~~~~~s~~g~-------~l~~~~~~~ 209 (268)
|..++.-+.|+|+|.. +.++..-|.+.+|.......++.. ++ ... ..+.-+++++. ..+++++..
T Consensus 100 h~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a 178 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA 178 (1416)
T ss_pred CCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence 7889999999998765 556666799999976533323322 22 112 23334566641 223344433
Q ss_pred EE-EEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 210 VK-FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 210 v~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+- .++.+.. . ......-.-.+ .|..|..++.+|.||--| .+|..+.++
T Consensus 179 lD~~fnwk~~--~-----a~rs~~ksgv~-~g~~F~~~~~~GtVyyvd-q~g~~~~V~ 227 (1416)
T KOG3617|consen 179 LDEPFNWKES--L-----AERSDEKSGVP-KGTEFLFAGKSGTVYYVD-QNGRQRTVH 227 (1416)
T ss_pred hcccccCccc--h-----hhccccccCCC-CCcEEEEEcCCceEEEEc-CCCcEEEEE
Confidence 32 2222110 0 00000111123 688999999999998887 357766664
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.45 E-value=0.064 Score=46.61 Aligned_cols=233 Identities=16% Similarity=0.174 Sum_probs=123.0
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCC--------------------------CCe-----------------E
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--------------------------GDW-----------------I 54 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~--------------------------~~~-----------------~ 54 (268)
.|..+.|.+ +..-||.|...|.+.+|.... +++ .
T Consensus 3 ~v~~vs~a~---~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFAP---ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEET---TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEecC---CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 477888875 444788899999998862111 111 1
Q ss_pred EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec---------cCCeEEEEEEC-----CCC---CEE
Q 024372 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---------HKHIVRACAFS-----EDT---HLL 117 (268)
Q Consensus 55 ~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~---------~~~~v~~v~~~-----~~~---~~l 117 (268)
.-+....++|.+++.+. =-++|-|..+|.+.|-|++....+..-. ....++++.|+ .|+ -++
T Consensus 80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 11233468899999874 4578889999999999996665555422 12356677664 233 577
Q ss_pred EEeeCCCeEEEEECC--C-CCCCCe---EecCCcccEEEEEEe-CCC--------------------CcEEEEeeCCCeE
Q 024372 118 LTGGFEKILRIFDLN--R-PDAPPR---EVGNSSGSIRTVAWL-HSD--------------------QTILSSCTDSGGV 170 (268)
Q Consensus 118 ~s~~~d~~i~~~d~~--~-~~~~~~---~~~~~~~~v~~~~~~-~~~--------------------~~~~~~~~~d~~i 170 (268)
+.|...|.+.+|.+- . +....+ ....+.+++..+.-. .+. ..+++.+++ ..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe-~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE-SDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S-SEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc-cce
Confidence 888999999999753 1 111111 111344555555432 211 124555555 799
Q ss_pred EEEeCCCCceEEeecCC-CCEEEEEEC-----CCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCCC-----ceeeEEcCC
Q 024372 171 RLWDARSGKIVQTLETK-SPVTSAEVS-----RDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCN-----TESASLEPK 238 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~s-----~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~ 238 (268)
|++.+.+.+..++.... ..+..+.+- ..+..|++ -.++.|+++.+-..+.+.....+.. ....++.+
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~- 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR- 316 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T-
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC-
Confidence 99999988876655422 223344443 23444544 5789999999988888877776532 22344544
Q ss_pred CCCEEEeccCCC--eEEEEE
Q 024372 239 LGNIFIAGGEDM--WVHVFD 256 (268)
Q Consensus 239 ~~~~~~~gs~d~--~i~~wd 256 (268)
+|+.|+-.|... .+.+|.
T Consensus 317 ~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 317 NGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp TS-EEEE-SSSEEEEEEEES
T ss_pred CCCEEEEeCcccEEEEEEEc
Confidence 688776554432 344443
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.064 Score=46.49 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=132.9
Q ss_pred EEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeC---CCeEEEEECCCCCCCCeEe
Q 024372 66 SCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV 141 (268)
Q Consensus 66 ~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~---d~~i~~~d~~~~~~~~~~~ 141 (268)
.+++++.+. ..+....+..|.+.|..+...............+.++++++.++.+.. ++.+.+.|..+...... .
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E
Confidence 456777776 456666678999999888777777766656677899999987777654 67888888665443322 2
Q ss_pred cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE-e----ecCCCCEEEEEECCCCcEEEEe-C-C--CeEEE
Q 024372 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTA-D-G--SSVKF 212 (268)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~----~~~~~~v~~~~~s~~g~~l~~~-~-~--~~v~~ 212 (268)
.--..+ ..+++.|.+..++.+-..++.|.+.|.......+ . .........+.++|+|.++... . + +.+..
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 222234 6788889888777776677999999987766553 1 2223345678999999865443 2 2 57888
Q ss_pred EeCCCceeeeE-EeCCC-CceeeEEcCCCCCEEEec-cCCCeEEEEECCCCcEEee
Q 024372 213 WDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAG-GEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 213 wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g-s~d~~i~~wd~~~g~~~~~ 265 (268)
.|......... +.... ........| .|..+... +..+.+.+-|..+......
T Consensus 236 id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 236 IDTATGNVTATDLPVGSGAPRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EeCCCceEEEeccccccCCCCceeECC-CCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 88887665554 33333 244555566 57776666 4557899999877665543
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.42 E-value=0.045 Score=46.18 Aligned_cols=189 Identities=11% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCCeeeEEEecCCCC----CcEEEEEeC----------CCCeEEeeCCCC-----Ce--EEEeeCccCcEEEEEecCCCc
Q 024372 16 SRPVVDLFYSPITPD----GFFLVSASK----------DSSPMLRNGETG-----DW--IGTFEGHKGAVWSCCLDANAL 74 (268)
Q Consensus 16 ~~~v~~~~f~~~~~d----g~~l~s~s~----------d~~i~iw~~~~~-----~~--~~~~~~h~~~V~~~~~~~~~~ 74 (268)
.+.+.+++......+ -.+++.|+. .|.+.++++.+. ++ +... ..+++|++++-- ++.
T Consensus 23 ~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~ 100 (321)
T PF03178_consen 23 NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR 100 (321)
T ss_dssp TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE
T ss_pred CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE
Confidence 444555555443322 467887754 277888888773 22 2222 247889998755 455
Q ss_pred EEEEeeCCCcEEEEeCCCCC-eeeeecc--CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe--cCCcccEE
Q 024372 75 FSASGSADFTAKLWDALTGD-EKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIR 149 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~~~-~~~~~~~--~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~--~~~~~~v~ 149 (268)
++++. .+.+.+|++...+ ....... +..+.++... +++++.|...+-+.++............ ....-.++
T Consensus 101 lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~ 176 (321)
T PF03178_consen 101 LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVT 176 (321)
T ss_dssp EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEE
T ss_pred EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEE
Confidence 44443 5799999998777 4333332 3345555443 5588888877778877443211111111 22234578
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEEeCCC-------Cc-e---EEeecCCCCEEEE---EECC--CCc-------EEEEeC
Q 024372 150 TVAWLHSDQTILSSCTDSGGVRLWDARS-------GK-I---VQTLETKSPVTSA---EVSR--DGR-------YITTAD 206 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~-------~~-~---~~~~~~~~~v~~~---~~s~--~g~-------~l~~~~ 206 (268)
++.+..++. .++++..+|.+.++.... +. . ...+.....++++ .+.| .+. .+.++.
T Consensus 177 ~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~ 255 (321)
T PF03178_consen 177 AAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV 255 (321)
T ss_dssp EEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred EEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence 888885554 566777889999987642 22 2 2334445557776 4455 221 455556
Q ss_pred CCeEE
Q 024372 207 GSSVK 211 (268)
Q Consensus 207 ~~~v~ 211 (268)
+|.|-
T Consensus 256 ~G~Ig 260 (321)
T PF03178_consen 256 DGSIG 260 (321)
T ss_dssp TS-EE
T ss_pred CCEEE
Confidence 66655
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.025 Score=46.48 Aligned_cols=144 Identities=23% Similarity=0.303 Sum_probs=91.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE----------
Q 024372 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ---------- 182 (268)
Q Consensus 113 ~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~---------- 182 (268)
.++.|+.|+.+| +.+++...+....+.. +...|..+...++-..+++- + |+.+.++++.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvL-s-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVL-S-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEE-c-CCccEEEEchhhcccccccccccccc
Confidence 567888898888 8888873222222222 22348888888776655544 3 3999999987654333
Q ss_pred -----eecCCCCEEEEE---ECCCCcEEEEeCCCeEEEEeCCC----c-eeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372 183 -----TLETKSPVTSAE---VSRDGRYITTADGSSVKFWDANH----F-GLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 183 -----~~~~~~~v~~~~---~s~~g~~l~~~~~~~v~~wd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 249 (268)
.+.....+...+ -.....+++.+-.+.|.+|.... + ...+.+..+..+..+.+. ++.++.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC
Confidence 122222344444 22334566667677888877643 4 577888888888888876 5567777655
Q ss_pred CeEEEEECCCCcEEee
Q 024372 250 MWVHVFDFHTGEQIAI 265 (268)
Q Consensus 250 ~~i~~wd~~~g~~~~~ 265 (268)
+ ..+.|+.+++....
T Consensus 158 ~-f~~idl~~~~~~~l 172 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSEL 172 (275)
T ss_pred c-eEEEecCCCCceEE
Confidence 5 67888887766544
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0061 Score=54.82 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=83.3
Q ss_pred ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cC-CeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HK-HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (268)
Q Consensus 60 h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~-~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (268)
|...|.--+++..+.+++-|+.-|.+++++-..+.....-. -. ..+..++.|++..++|.|+..+.|-++.++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455555677788999999999999999988777544322 22 23455667999999999999999999988753222
Q ss_pred CeEe-----cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372 138 PREV-----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 138 ~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
.... ..|...|+++.|++++..++ +|...|+|..--+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 2111 12567899999999887655 555668888766665
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.049 Score=43.71 Aligned_cols=232 Identities=16% Similarity=0.077 Sum_probs=120.7
Q ss_pred eecCCCeeeEEEecCCCC------------------CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC-cEEEEEecCCC
Q 024372 13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKG-AVWSCCLDANA 73 (268)
Q Consensus 13 ~~h~~~v~~~~f~~~~~d------------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~-~V~~~~~~~~~ 73 (268)
..|++.+.++.+- +.. |+.++.|...+.+.+-+.++|+..-.|..-.. .++ ....+++
T Consensus 29 gSHs~~~~avd~~--sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~ 105 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQ--SGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDG 105 (354)
T ss_pred ecCCceEEEecCC--CCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCC
Confidence 4688888877653 111 66788899999999999999976655543222 222 2356788
Q ss_pred cEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEE-EEEECC-CCCEEEEeeCCCeEEEEECCCCCCCCeEecC--CcccEE
Q 024372 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGN--SSGSIR 149 (268)
Q Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~-~v~~~~-~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~~v~ 149 (268)
..+..|+.|++.+.-|..+..++....-+..+. +=+..| ++. |+.+...|.+---..+.. ...++.. ..+++.
T Consensus 106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~--~~~~~w~~~~~~PiF 182 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPY--SSTEFWAATRFGPIF 182 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCC--CcceehhhhcCCccc
Confidence 899999999999999999988877755443322 112344 333 333444443322222211 1112111 112222
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCC-----------EEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372 150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-----------VTSAEVSRDGRYITTADGSSVKFWDANHF 218 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------v~~~~~s~~g~~l~~~~~~~v~~wd~~~~ 218 (268)
.--.. -++.+..++- ||.+.-+| ..|+++..+...++ ...+.+..++-+.+.---..-.+|..+.+
T Consensus 183 ~splc-v~~sv~i~~V-dG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g 259 (354)
T KOG4649|consen 183 ASPLC-VGSSVIITTV-DGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG 259 (354)
T ss_pred cCcee-ccceEEEEEe-ccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC
Confidence 11000 0122333333 25555555 44555544433322 13344444444443332234567777766
Q ss_pred eeeeEEeCCCCceeeEEcCCC---CCEEEeccCCCeEEEE
Q 024372 219 GLVKGYNMPCNTESASLEPKL---GNIFIAGGEDMWVHVF 255 (268)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~gs~d~~i~~w 255 (268)
...+.|-.+.. ...+.... .+++..++.|+++.+-
T Consensus 260 ~t~~vy~~p~l--~F~~h~~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 260 TTLHVYLSPKL--RFDLHSPGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred cEEEEEeCccc--ceeccCCCCcchhhhhhhcCCCcEEEE
Confidence 44444433311 22222211 3455567889888777
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.025 Score=39.32 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~ 234 (268)
.++.+-|+.|++|..||+|+- .+.+..+.....+.++.-.+.++|..+-.+|+|-+|+-.. .+-....+..+.+..
T Consensus 12 ~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKSK~~~~~~~ 87 (111)
T PF14783_consen 12 GDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKSKNQVTSMA 87 (111)
T ss_pred CCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeeccCCCeEEEE
Confidence 345566778889999999864 4777778777888899988888888888889999988532 122222233344444
Q ss_pred EcCCC--C-CEEEeccCCCeEE
Q 024372 235 LEPKL--G-NIFIAGGEDMWVH 253 (268)
Q Consensus 235 ~~~~~--~-~~~~~gs~d~~i~ 253 (268)
....+ | .-|++|=.+|.|-
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEcCCCCCceEEEEEecCCeEE
Confidence 33222 2 3577777777664
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00075 Score=36.20 Aligned_cols=34 Identities=41% Similarity=0.685 Sum_probs=29.3
Q ss_pred EeeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN 47 (268)
Q Consensus 11 ~~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~ 47 (268)
.+..|...|.++.|.| ++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 3457999999999986 557999999999999996
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.30 E-value=0.1 Score=45.67 Aligned_cols=185 Identities=13% Similarity=0.181 Sum_probs=92.4
Q ss_pred CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeecc---CCe-----EEEEEECCC
Q 024372 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH---KHI-----VRACAFSED 113 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~---~~~-----v~~v~~~~~ 113 (268)
.|+||+. .|+++.++.--.+.+..+.|..+.. |+.-..||+++++|+.... ...+.. ... +....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence 4777874 5777777764448899999988655 4556789999999986333 111111 011 222233445
Q ss_pred CCEEEEeeCCCeEEEE-ECCCCCCCCeE---ecCCcc------cEEE-EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEE
Q 024372 114 THLLLTGGFEKILRIF-DLNRPDAPPRE---VGNSSG------SIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (268)
Q Consensus 114 ~~~l~s~~~d~~i~~~-d~~~~~~~~~~---~~~~~~------~v~~-~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 182 (268)
|-.+.++ ++.+.+. +...+ ...+. ...... .... ..+..+....+... .++.+.+-+....+
T Consensus 139 GivvLt~--~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~~~~~--- 211 (410)
T PF04841_consen 139 GIVVLTG--NNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDENSFK--- 211 (410)
T ss_pred CEEEECC--CCeEEEEeCcccc-chhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEccccc---
Confidence 6444433 3333333 22211 01010 000000 0000 11222222222222 22455533322211
Q ss_pred eecCCCCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCC--CCceeeEEc
Q 024372 183 TLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMP--CNTESASLE 236 (268)
Q Consensus 183 ~~~~~~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~--~~~~~~~~~ 236 (268)
.+...+++..+++||+|++++. .+++.+.+....-.+.+..+... ..+....|+
T Consensus 212 ~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 212 QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred cccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 1334467999999999999875 56678877765444455555543 333444444
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.22 E-value=0.13 Score=45.11 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=99.6
Q ss_pred EEEEEecCCCcEEEE-eeCC----CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCC-----------eEE
Q 024372 64 VWSCCLDANALFSAS-GSAD----FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-----------ILR 127 (268)
Q Consensus 64 V~~~~~~~~~~~l~s-~s~D----~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~-----------~i~ 127 (268)
+...+++|+++++|- -+.. ..+++.|+.+++.+...-....-..+.|.++++.|+....+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 335678999998763 2333 459999999986654321111112389999988776554333 367
Q ss_pred EEECCCCCCCC-eEecCCccc--EEEEEEeCCCCcEEEEeeCC---CeEEEEeCCCC----ceEEee-cCCCCEE-EEEE
Q 024372 128 IFDLNRPDAPP-REVGNSSGS--IRTVAWLHSDQTILSSCTDS---GGVRLWDARSG----KIVQTL-ETKSPVT-SAEV 195 (268)
Q Consensus 128 ~~d~~~~~~~~-~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d---~~i~iwd~~~~----~~~~~~-~~~~~v~-~~~~ 195 (268)
.|.+.++...- ..+...... ...+..++++..+++..... ..+.+-|+..+ .....+ .....+. .+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 77776543221 122222222 45677788888777654443 35888888875 223332 3223333 3333
Q ss_pred CCCCcEEEEeC----CCeEEEEeCCCcee---eeEEeCCCC-ceeeEEcCCCCCEEEeccCCC--eEEEEECC
Q 024372 196 SRDGRYITTAD----GSSVKFWDANHFGL---VKGYNMPCN-TESASLEPKLGNIFIAGGEDM--WVHVFDFH 258 (268)
Q Consensus 196 s~~g~~l~~~~----~~~v~~wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~gs~d~--~i~~wd~~ 258 (268)
. ++.+++.++ .+.|...++..... ...+.-+.. .....+..-.+.+++.--.|+ .|++||..
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3 555544332 34566667766542 112222222 122222221244555554444 68889987
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.011 Score=51.69 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=90.2
Q ss_pred EEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE--E-----EEeeCCCcEEEEeCCCCCe-eeee------cc
Q 024372 36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF--S-----ASGSADFTAKLWDALTGDE-KHSF------EH 101 (268)
Q Consensus 36 s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-----~s~s~D~~v~iw~~~~~~~-~~~~------~~ 101 (268)
++..-..+.-.|++.|+.+.+++-|.. |.-+.+.|+.+. | .-|-.|..|.-||..-... +... ..
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 334444555568899999999988876 666777776432 2 2345678888898763222 1111 12
Q ss_pred CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372 102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 102 ~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 176 (268)
+....|.+-..+| .++.|+.+|.||+||- .+..-...+.....+|..|....+|.+++++| +.++.+-|+.
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred ccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 2234455444455 6788999999999994 33333345566677899999999999999887 3678787764
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0028 Score=56.27 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=72.7
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEE-EEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEK 96 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 96 (268)
.|..+.|+| .-.++|.+..+|.+.+.... -..+-++.-|...|. +++|.|||+.+|.|=.||+|++-|++.+..+
T Consensus 22 ~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 566888987 45699999999999888777 445667776666666 9999999999999999999999999988877
Q ss_pred ee--eccCCeEEEEEECC
Q 024372 97 HS--FEHKHIVRACAFSE 112 (268)
Q Consensus 97 ~~--~~~~~~v~~v~~~~ 112 (268)
.. +.....|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 66 44555666666653
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.17 E-value=0.18 Score=45.77 Aligned_cols=232 Identities=14% Similarity=0.091 Sum_probs=125.7
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEee--CccC--cEEE-EEecCCCcEEEEee-----CCCcEEEEeCCCCCeeeeecc
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEH 101 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~--~h~~--~V~~-~~~~~~~~~l~s~s-----~D~~v~iw~~~~~~~~~~~~~ 101 (268)
..++.++.|+.+.-.|..+|+.+=... .+.. .+.+ -.+. ++..++..+ .++.|.-+|.++++.+-.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 467778889999889999998764432 1211 1111 0111 344443322 268899999988886554421
Q ss_pred C--C------------------------------eE-EEEEECCCCCEEEEeeCC-----C-----------eEEEEECC
Q 024372 102 K--H------------------------------IV-RACAFSEDTHLLLTGGFE-----K-----------ILRIFDLN 132 (268)
Q Consensus 102 ~--~------------------------------~v-~~v~~~~~~~~l~s~~~d-----~-----------~i~~~d~~ 132 (268)
. . .+ ....+.+...+++.+..+ + .|--.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 0 0 01 123556655666655422 2 23344555
Q ss_pred CCCCCCeEec-CCcc-------cEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCceEEe--------e----cCCC--
Q 024372 133 RPDAPPREVG-NSSG-------SIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQT--------L----ETKS-- 188 (268)
Q Consensus 133 ~~~~~~~~~~-~~~~-------~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~--------~----~~~~-- 188 (268)
+++..-..+. +|.. ...-+..-.++. .+++.+..+|.+.+.|-++|+.+.. . ....
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 5554332221 2211 011112112443 4677788889999999999987621 1 0000
Q ss_pred ----------------------------CEEEEEECCCCcEEEE--eC--------------------------------
Q 024372 189 ----------------------------PVTSAEVSRDGRYITT--AD-------------------------------- 206 (268)
Q Consensus 189 ----------------------------~v~~~~~s~~g~~l~~--~~-------------------------------- 206 (268)
....++++|+..++.. .+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 0122455555443321 11
Q ss_pred CCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 207 ~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
-+.|.-+|+.+++..-.+..........+.- .+.+++.+..|+.++.+|.+|||++-.
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~ 497 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWK 497 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEE
Confidence 1346777887777665555433222222222 355777788899999999999998754
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.10 E-value=0.16 Score=44.09 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=100.7
Q ss_pred eeecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe--eC------ccCcEEEEEec-----CCC---cE
Q 024372 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EG------HKGAVWSCCLD-----ANA---LF 75 (268)
Q Consensus 12 ~~~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~--~~------h~~~V~~~~~~-----~~~---~~ 75 (268)
+....++|++++.+. =| .+|.|..+|.+.|.|.+....+..- +. ....|.++.|+ .|+ -.
T Consensus 82 ~~~~~g~vtal~~S~---iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD---IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-B---TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCC---Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 345689999999984 34 7899999999999999777665442 22 12346667664 333 35
Q ss_pred EEEeeCCCcEEEEeCCC-CCeee------ee-ccCCeEEEEE-ECCC-C-------------------CEEEEeeCCCeE
Q 024372 76 SASGSADFTAKLWDALT-GDEKH------SF-EHKHIVRACA-FSED-T-------------------HLLLTGGFEKIL 126 (268)
Q Consensus 76 l~s~s~D~~v~iw~~~~-~~~~~------~~-~~~~~v~~v~-~~~~-~-------------------~~l~s~~~d~~i 126 (268)
+..|-..|.+.+|.+.- ..... .. .+..++..+. ++.+ + +-++....+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 66777889999998742 11111 11 2333433332 3221 0 223344557889
Q ss_pred EEEECCCCCCCCeEecCCcccEEEEEEe----CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-----CEEEEEECC
Q 024372 127 RIFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSAEVSR 197 (268)
Q Consensus 127 ~~~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~v~~~~~s~ 197 (268)
|++.+.+.+...+.+ ...-....+.+. ......|+.-..+|.++++.+..-+.+..++... ......+++
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999876544322333 111112223332 1234556666778999999999988887765422 234567799
Q ss_pred CCcEEEEeCCCeEEE
Q 024372 198 DGRYITTADGSSVKF 212 (268)
Q Consensus 198 ~g~~l~~~~~~~v~~ 212 (268)
+|.++.-.+...+.+
T Consensus 317 ~Gdi~~~~gpsE~~l 331 (395)
T PF08596_consen 317 NGDIFYWTGPSEIQL 331 (395)
T ss_dssp TS-EEEE-SSSEEEE
T ss_pred CCCEEEEeCcccEEE
Confidence 998776444434433
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.16 Score=42.88 Aligned_cols=207 Identities=18% Similarity=0.127 Sum_probs=106.9
Q ss_pred CeEEeeCCCCCeEEEeeCcc-CcEE---EEEecCC----CcEEEEeeC----------CCcEEEEeCCCC-----C--ee
Q 024372 42 SPMLRNGETGDWIGTFEGHK-GAVW---SCCLDAN----ALFSASGSA----------DFTAKLWDALTG-----D--EK 96 (268)
Q Consensus 42 ~i~iw~~~~~~~~~~~~~h~-~~V~---~~~~~~~----~~~l~s~s~----------D~~v~iw~~~~~-----~--~~ 96 (268)
.+++.|..+.+.+.++.-.. ..+. .+.+..+ ..+++.|.. .|.+.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46777777777665553221 1233 3334432 455554422 288999999874 2 12
Q ss_pred eeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCC-CCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 97 ~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
.....+.+|.+++-- +++++++. .+.+.+|++...+ ............+.++.... .+++.|.-.+.+.++..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEE
Confidence 233467788887644 45444433 4789999987655 22222323334666766553 24555555577777644
Q ss_pred CC-CceEEeec---CCCCEEEEEECCCCcEEE-EeCCCeEEEEeCCC-----------ceeeeEEeCCCCceee---EEc
Q 024372 176 RS-GKIVQTLE---TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANH-----------FGLVKGYNMPCNTESA---SLE 236 (268)
Q Consensus 176 ~~-~~~~~~~~---~~~~v~~~~~s~~g~~l~-~~~~~~v~~wd~~~-----------~~~~~~~~~~~~~~~~---~~~ 236 (268)
+. .+.+..+. ....+.++.+-++++.++ +..++.+.++.... ...+..+.....+..+ .+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 32 23233332 223477788776654544 44578888876542 1233445555444444 333
Q ss_pred CC--CC-----CEEEeccCCCeEEE
Q 024372 237 PK--LG-----NIFIAGGEDMWVHV 254 (268)
Q Consensus 237 ~~--~~-----~~~~~gs~d~~i~~ 254 (268)
+. .. ..++.++.+|.|.+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 31 11 24777777887763
No 366
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.14 Score=41.91 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=124.6
Q ss_pred ecCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCc-cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC
Q 024372 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (268)
Q Consensus 14 ~h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 92 (268)
|-+..|.++.|+| +.+.|++......-.|+-..+|++++++.-. -+.-.++++..++.+.++--++..+.++.+..
T Consensus 83 g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 83 GETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 4444599999996 6678999999889899988899999887521 12234577888899888888999999987755
Q ss_pred CCeee-----ee-----cc-CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCC-------cccEEEEE
Q 024372 93 GDEKH-----SF-----EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNS-------SGSIRTVA 152 (268)
Q Consensus 93 ~~~~~-----~~-----~~-~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~-------~~~v~~~~ 152 (268)
..... .+ .+ ....-.++|.|....|..+=.-+-+++|......... .....+ ...+..+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 43211 11 12 2235679999988888877777778888764221010 000011 12456777
Q ss_pred EeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC----------CCEEEEEECCCCcEEEEeC
Q 024372 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 153 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~s~~g~~l~~~~ 206 (268)
|.+...++++-+.+++.+.-.|.+ |+.+..+... .....++..++|.+.+.|+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 887778888887777777777765 4444433211 2356677777777655554
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.21 Score=43.36 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=128.0
Q ss_pred eEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EE-eeCCCcEEEEeCCCCCeeeeeccC-CeEEEEEECCCCC-EEE
Q 024372 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-AS-GSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTH-LLL 118 (268)
Q Consensus 43 i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s-~s~D~~v~iw~~~~~~~~~~~~~~-~~v~~v~~~~~~~-~l~ 118 (268)
+.+++..+.+....+.-+. ....+.+.+++..+ ++ ...+ .+..-+............. ..-..+..++.+. ..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5555555555555554333 33445667777433 33 3333 5555555422222222222 2234567777776 444
Q ss_pred EeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee--CCCeEEEEeCCCCceEEeecCCCCEEEEEEC
Q 024372 119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLETKSPVTSAEVS 196 (268)
Q Consensus 119 s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s 196 (268)
....++.+.+.|.............. .-..+++.+++..+.++-. .++++.+.|..+.+.+.+.........++++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~ 168 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVD 168 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEEC
Confidence 55556889999965433221111111 3456788888888777765 3689999999999988875543223899999
Q ss_pred CCCcEEEEe--CCCeEEEEeCCCceeee-----EEeCCCCceeeEEcCCCCCEE-EeccC--CCeEEEEECCCCcEEe
Q 024372 197 RDGRYITTA--DGSSVKFWDANHFGLVK-----GYNMPCNTESASLEPKLGNIF-IAGGE--DMWVHVFDFHTGEQIA 264 (268)
Q Consensus 197 ~~g~~l~~~--~~~~v~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~gs~--d~~i~~wd~~~g~~~~ 264 (268)
|+|..+... .++.|.+.|.......+ .......+....+.+ +|..+ ++-.. ++.+...|..++....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999865443 47899999977655443 122223345566666 46544 43322 3689999988776554
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.17 Score=41.27 Aligned_cols=237 Identities=16% Similarity=0.180 Sum_probs=127.4
Q ss_pred CCCeeeEEEecCCCCCcE-EEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcE-EEEeeCCCc-EEEEeCCC
Q 024372 16 SRPVVDLFYSPITPDGFF-LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFT-AKLWDALT 92 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~-l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~s~D~~-v~iw~~~~ 92 (268)
..++..-+|.. .||++ +++.+.+|++.-- ..---++| .++++|...+ ++-+-+-|+ ..++|...
T Consensus 34 ~qavfasaf~~--~dgs~g~a~~~eaGk~v~~------~~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 34 AQAVFASAFDA--RDGSFGAATLSEAGKIVFA------TALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred Ccchheeeeec--cCCceeEEEEccCCceeee------eecccccC-----CeecCCCCcceEEEEecCCceEEEECCCC
Confidence 34555555553 45543 4455555555321 00011344 3556766544 333445555 45788887
Q ss_pred CCeeeeec---cCCeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEe
Q 024372 93 GDEKHSFE---HKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 93 ~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
.+...+.. ..+.--.-.|||||.+|+..-.| |.|-+||.+..-...-++..+.-.-..+.+.+++..++.+.
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 76554442 22344455699999999986433 77999998754433444544444445678888888776654
Q ss_pred e------CCC-----------eEEEEeCCCCceEEee--c---CCCCEEEEEECCCCcEEEEeC------CCeEEEEeCC
Q 024372 165 T------DSG-----------GVRLWDARSGKIVQTL--E---TKSPVTSAEVSRDGRYITTAD------GSSVKFWDAN 216 (268)
Q Consensus 165 ~------~d~-----------~i~iwd~~~~~~~~~~--~---~~~~v~~~~~s~~g~~l~~~~------~~~v~~wd~~ 216 (268)
+ +-| .+.+-|..+|+.+.+. . .+-.+.-++..+||+.+.... |.--.+=-..
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 3 111 2444565666655432 2 123467788888888766431 1111111122
Q ss_pred CceeeeEEeCCCC--------ceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 217 HFGLVKGYNMPCN--------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 217 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.++.++-+..++. +-+++...+++-..+|.=.....-+||.++|..+..
T Consensus 261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 3344444444322 123444443333333444455677899999987653
No 369
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.87 E-value=0.24 Score=44.32 Aligned_cols=151 Identities=16% Similarity=0.259 Sum_probs=92.4
Q ss_pred CCCeeeEEEecCCCCCcEEEEEe---CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCC----CcEEEEeeCCCcEEEE
Q 024372 16 SRPVVDLFYSPITPDGFFLVSAS---KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLW 88 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s---~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~s~D~~v~iw 88 (268)
-+||.+++|- ||+.++-.. .+|.+++=|. +.++.| ..|..++|.|- ..-++....-+.|-+|
T Consensus 19 iHPvhGlaWT----DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT----DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec----CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 4589999994 777665442 2333322111 233444 46889999875 2245566778889999
Q ss_pred eCCC-----CCe--eeeeccCC--eE--EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 89 DALT-----GDE--KHSFEHKH--IV--RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 89 ~~~~-----~~~--~~~~~~~~--~v--~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
.+.. ++. .++.+..+ +| ..+.|||...+|+.=.....--++++..............|.|.|.+|.++|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 8742 221 12222222 22 3567999888877655544445667665444444444567899999999999
Q ss_pred CcEEEEeeCCCeEEEEeCCC
Q 024372 158 QTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~ 177 (268)
..++++-+..=.-.|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 88766654434577898643
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.83 E-value=0.31 Score=44.74 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=91.5
Q ss_pred CeeeEEEecCCCCCcEEEEEe------CCCCeEEeeCCC-CCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-CcEEEE-
Q 024372 18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW- 88 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s------~d~~i~iw~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~iw- 88 (268)
.+.+.+.+ |||+.+|... .|..-.+|-... ++...-+.+. ....-+|+|++..+++.+.. ..+++.
T Consensus 351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 45566665 5888887776 355556664332 2222222332 25566799998877666432 223333
Q ss_pred ----------eCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEE---EECCCCCCCC---eEecC-CcccEEEE
Q 024372 89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI---FDLNRPDAPP---REVGN-SSGSIRTV 151 (268)
Q Consensus 89 ----------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~---~d~~~~~~~~---~~~~~-~~~~v~~~ 151 (268)
++..+.... .....|..+.|+|||+.++... ++.+.+ -....+.... ..... .......+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 332222222 2345699999999999888755 466555 2222222111 11211 22235778
Q ss_pred EEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC---CCCEEEEEECCCCcEEEEeCCC
Q 024372 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGS 208 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~~ 208 (268)
.|.+++..++.+...+..+...++. |.....+.. ..++..++-+++ .++++.+++
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g 560 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS-TVYVTDARA 560 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc-eEEEEcCCc
Confidence 9988776433332222234333443 222222222 345667777764 343443343
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.81 E-value=0.2 Score=40.61 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=93.5
Q ss_pred eeeeeccC--CeEEEEEECCCCCEEEEeeCCC--eEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 95 EKHSFEHK--HIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 95 ~~~~~~~~--~~v~~v~~~~~~~~l~s~~~d~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+..++|. .....+.|..++.++-+.+.-| .++.+|+.+++...+......-==..++.. .+ .+..---.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d-~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GD-KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TT-EEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CC-EEEEEEecCCeE
Confidence 34455554 3566788867777777776655 578889887653322221111000123323 22 343333667999
Q ss_pred EEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCcee------eEEcCCCCCEE
Q 024372 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTES------ASLEPKLGNIF 243 (268)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 243 (268)
.+||..+.+.+.++.....--.++ .||+.+..+ ....+.++|..+++..+.......-.. +-+. +|..+
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEE
Confidence 999999999998887655544555 455555444 457999999999888776654321111 1111 35555
Q ss_pred EeccCCCeEEEEECCCCcEEeec
Q 024372 244 IAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+=.=....|...|..+|+.+...
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEE
Confidence 54434455778899999887753
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.80 E-value=0.41 Score=43.95 Aligned_cols=171 Identities=14% Similarity=0.111 Sum_probs=90.6
Q ss_pred CCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEee------CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCC
Q 024372 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED 113 (268)
Q Consensus 40 d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s------~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~ 113 (268)
+|.+.-.+....+.+...-+....+...+++|++..+|... .|..-.||-...+.....+........-.|+|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD 407 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD 407 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence 66665443322222222223334567888999998876544 244444553322222232222333666779999
Q ss_pred CCEEEEeeCC------------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEE---EeCCCC
Q 024372 114 THLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDARSG 178 (268)
Q Consensus 114 ~~~l~s~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~i---wd~~~~ 178 (268)
+..+.+.... +.+.+.+++.++.. . ...+.|..+.|+|++..++... ++.|.+ -....|
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~--~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVA--S--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG 481 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhh--h--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC
Confidence 8877766432 22322233322211 1 2345799999999998776554 367766 443445
Q ss_pred ce-E---Eeec--CCCCEEEEEECCCCcEEEEeCC--CeEEEEeCC
Q 024372 179 KI-V---QTLE--TKSPVTSAEVSRDGRYITTADG--SSVKFWDAN 216 (268)
Q Consensus 179 ~~-~---~~~~--~~~~v~~~~~s~~g~~l~~~~~--~~v~~wd~~ 216 (268)
+. + ..+. ....+.++.|.+++.+++...+ ..+...++.
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 41 1 1121 1223578999999997765443 334444443
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.26 Score=41.30 Aligned_cols=212 Identities=16% Similarity=0.130 Sum_probs=119.4
Q ss_pred CcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec------cCCe
Q 024372 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE------HKHI 104 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~------~~~~ 104 (268)
+.++.+--..+.+.-|+..+++.. .+..... +.++..-.++..|+++ ++-+.+++..++..+..+. ....
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~-~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VFPSPGG-FSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EEECCCC-cccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCC
Confidence 335666666677777887766432 3432222 2333333334445554 4456677765555423221 1123
Q ss_pred EEEEEECCCCCEEEEeeC-----------CCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 105 VRACAFSEDTHLLLTGGF-----------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 105 v~~v~~~~~~~~l~s~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
.+.+...|+|.+-++.-. -+.+..+|.. + ...+....+-.--+.++|+|++..++.+=+..+.|.-+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g-~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G-GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C-CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 456777888876554332 0223344431 1 11222222222346789999998888777766888888
Q ss_pred eCCC--Cce-----EEeec-CCCCEEEEEECCCCcEEEEe-CC-CeEEEEeCCCceeeeEEeCC-CCceeeEEcCC-CCC
Q 024372 174 DARS--GKI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DG-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK-LGN 241 (268)
Q Consensus 174 d~~~--~~~-----~~~~~-~~~~v~~~~~s~~g~~l~~~-~~-~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 241 (268)
++.. +.. ...+. ..+..-.+++..+|.+.++. .+ ..|..|+.+ ++++..+..| ..+..++|-.+ .+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 7752 211 11111 22446678888899888544 33 489999998 8889999988 45556666533 355
Q ss_pred EEEeccCC
Q 024372 242 IFIAGGED 249 (268)
Q Consensus 242 ~~~~gs~d 249 (268)
+|+++...
T Consensus 270 L~iTs~~~ 277 (307)
T COG3386 270 LYITSARS 277 (307)
T ss_pred EEEEecCC
Confidence 66665543
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.74 E-value=0.22 Score=40.07 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=72.9
Q ss_pred cEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEE-EEE
Q 024372 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA-CAF 110 (268)
Q Consensus 32 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~-v~~ 110 (268)
.+++.||..+.++--|.++|..+=+-. -..++.+-+.- -+++++-|...+.+++-+.+++.....+.-.+.|.+ ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 488899999999888999987542110 01222222221 367789999999999999999987777655554442 235
Q ss_pred CCCCCEEEEeeCCCeEEEEECCCCC
Q 024372 111 SEDTHLLLTGGFEKILRIFDLNRPD 135 (268)
Q Consensus 111 ~~~~~~l~s~~~d~~i~~~d~~~~~ 135 (268)
.+++..+..|+-|++....|..+..
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccc
Confidence 7789999999999999999976543
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.43 E-value=0.47 Score=39.99 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCCcEEEEE--eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCC-CCCeeeee----c-
Q 024372 29 PDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSF----E- 100 (268)
Q Consensus 29 ~dg~~l~s~--s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~-~~~~~~~~----~- 100 (268)
.||+++... +-.-.|-|-|+..++.+.++.- .....+ |.....-+.+-+.||.+.-..+. .++....- .
T Consensus 104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred cCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 466666554 3334566778888888777742 111111 22122346677889988887775 44443221 1
Q ss_pred cCCeEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe-EecC------Ccc----cEEEEEEeCCCCcEEEEe--eC
Q 024372 101 HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGN------SSG----SIRTVAWLHSDQTILSSC--TD 166 (268)
Q Consensus 101 ~~~~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~-~~~~------~~~----~v~~~~~~~~~~~~~~~~--~~ 166 (268)
..+++. .-.+...+..++-.+++|.++-.|+........ .... ..+ .-.-+++.+..+.+++.- ..
T Consensus 181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 112221 223333444555568888888877754321110 0000 001 111245555444443321 11
Q ss_pred C-------CeEEEEeCCCCceEEeecCCCCEEEEEECCCCc-EEE-Ee-CCCeEEEEeCCCceeeeEEeC
Q 024372 167 S-------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-YIT-TA-DGSSVKFWDANHFGLVKGYNM 226 (268)
Q Consensus 167 d-------~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~-~~-~~~~v~~wd~~~~~~~~~~~~ 226 (268)
+ .+|-++|+.+++.+..++...++.++.++.+.+ +|. .. .++.+.+||..+++.++....
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 258888999999999888766788999999876 443 33 468999999999988876653
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.42 E-value=0.011 Score=34.40 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=32.8
Q ss_pred eeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
.+.....+..+....++| ..++++.|..||.|.+|++ +++.+
T Consensus 4 ~~~~k~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 4 QLGEKNLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred eecccCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence 344445556667788888 5899999999999999999 77764
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.011 Score=46.26 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=74.6
Q ss_pred EeeCCCcEEEEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeC
Q 024372 78 SGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (268)
Q Consensus 78 s~s~D~~v~iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (268)
.-+.|+.|+-+++...+....- .+...-.. ..-+..++.|..++.+.+|..+...............+.+..-.-
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG 111 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence 3456777777776443321111 11111111 112456788999999999987632211111111111222221112
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEE---eCCCeEEEEeCCCce
Q 024372 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITT---ADGSSVKFWDANHFG 219 (268)
Q Consensus 156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~---~~~~~v~~wd~~~~~ 219 (268)
+...+.-++..++.||.|++.-.+.+-...++. +......+..++++.. +.+..++.|++....
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 222355555667999999998877766554433 4555555555556543 457788888886543
No 378
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.008 Score=55.41 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred EEEecCCCCCcEEEEEe----CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeee
Q 024372 22 LFYSPITPDGFFLVSAS----KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (268)
Q Consensus 22 ~~f~~~~~dg~~l~s~s----~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 97 (268)
..|+|..| ++|.++ ..|.+-|+- ++|+..+... ..-.+.+++|+|....|+.|-.-|.+-+|...+.+...
T Consensus 21 ~SWHPseP---lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 21 SSWHPSEP---LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccCCCCc---eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 45676555 566553 445666663 4555332211 01124558899988888998888999999987765543
Q ss_pred e-eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 98 S-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 98 ~-~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
. ..|+.++..+.|+++|..++++..-|.+.+|-..
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3 3588999999999999999999999999999653
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.13 Score=45.30 Aligned_cols=137 Identities=15% Similarity=0.184 Sum_probs=90.5
Q ss_pred EEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--------CEEEEeeCCCeEEEEECCCCCC-CCeEecCC-
Q 024372 75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDA-PPREVGNS- 144 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~-~~~~~~~~- 144 (268)
++.++..-..++--|+++++.+..+....-|+-+.+.|+. +.| .|-.|+.+.-||++.... ...-...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccE-EeecCCceEEecccccCcceeeeeeccc
Confidence 4456666677888899999999998876667777777754 222 366677788899874322 11111111
Q ss_pred ---cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE-EeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 145 ---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 145 ---~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
.....|++-- .+++++ .|+.+|-||+||- .+..- ..++. ..+|..+..+.+|+++++.-+..+.+-|+
T Consensus 427 y~~k~nFsc~aTT-~sG~Iv-vgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATT-ESGYIV-VGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccccccceeeec-CCceEE-EeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1223455543 334444 4566799999996 44433 33443 46799999999999998887778887776
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.12 E-value=0.35 Score=44.36 Aligned_cols=108 Identities=18% Similarity=0.348 Sum_probs=68.0
Q ss_pred EEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee--eccCCeEEEEEE--CCCCCEEEEeeCCCeEEEEECCC-------C
Q 024372 66 SCCLDANALFSASGSADFTAKLWDALTGDEKHS--FEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNR-------P 134 (268)
Q Consensus 66 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~~~v~~v~~--~~~~~~l~s~~~d~~i~~~d~~~-------~ 134 (268)
-+.-+.-++..+.-+....+.|||...+..... +...+.|..+.| .|+++.+++.++.+.|.+|.... +
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 333444444444444456899999988774333 344678999988 55899999999999999996421 1
Q ss_pred C-CCCeEe--c-CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372 135 D-APPREV--G-NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 135 ~-~~~~~~--~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 176 (268)
. ...+.+ . ....+|....|.++|. ++++ ++ +.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~-sG-Nqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVG-SG-NQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCe-EEEE-eC-CEEEEECCC
Confidence 1 111111 1 1224678889987764 4433 33 789999753
No 381
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.10 E-value=0.21 Score=45.73 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred EEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEe--CCCCcEEEEeeCCCeEEEEeC-C--------
Q 024372 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSCTDSGGVRLWDA-R-------- 176 (268)
Q Consensus 108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~iwd~-~-------- 176 (268)
+.-+.-++..+.-+....+.+||.+.+.....+.-...+.|..+.|. |+++.+++.|.. +.|.++.- |
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchhhhcCCc
Confidence 33444555555555667899999876553333332446789999885 677888988877 78888853 1
Q ss_pred CCceEEeec---C-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 177 SGKIVQTLE---T-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 177 ~~~~~~~~~---~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
+-..++.+. . ..++.+..|.++|.++++++ ..+.++|-
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 112233332 1 24688899999998776554 47777764
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.09 E-value=0.022 Score=44.64 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCeEEeeCCC-CCeEEEeeC-ccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec-cC-CeEE
Q 024372 31 GFFLVSASKDSSPMLRNGET-GDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HK-HIVR 106 (268)
Q Consensus 31 g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~-~~-~~v~ 106 (268)
+.-|++|+.++.+.+|.... |........ -+.....+....++.+..+++.|+.+|.|++..++...... |. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 45789999999999987652 111111111 11222223333445577899999999999998877665543 33 2333
Q ss_pred EEEECCCCCEEEEe--eCCCeEEEEECC
Q 024372 107 ACAFSEDTHLLLTG--GFEKILRIFDLN 132 (268)
Q Consensus 107 ~v~~~~~~~~l~s~--~~d~~i~~~d~~ 132 (268)
....+..++.++.+ |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 33333444555555 666667777664
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.07 E-value=0.59 Score=38.00 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=72.3
Q ss_pred EEEEeCCCCcEEEEeeCCC--eEEEEeCCCCceEEeec--CCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372 150 TVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~ 225 (268)
.+.|.+++..+-++|-. | .|+.+|+.+++..+... ....-..+++..|.-+..+=.++..-+||..+++.+.++.
T Consensus 49 GL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 45555555555555544 4 79999999999876554 3344667777777655556567899999999999999999
Q ss_pred CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
++..-.-++ . +++.|+.......++.+|.++-+++.
T Consensus 128 y~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 128 YPGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp -SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred cCCcceEEE--c-CCCEEEEECCccceEEECCcccceEE
Confidence 876555555 3 35555555445569999987655543
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.03 E-value=1.5 Score=41.87 Aligned_cols=246 Identities=12% Similarity=0.102 Sum_probs=129.2
Q ss_pred CCCeeeEEEecCCCCCc---EEEEEeCCCCeEEe-eCCCCCeEEE--eeCcc--CcEEEEEecCCCcEEEEeeCCCcEEE
Q 024372 16 SRPVVDLFYSPITPDGF---FLVSASKDSSPMLR-NGETGDWIGT--FEGHK--GAVWSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~---~l~s~s~d~~i~iw-~~~~~~~~~~--~~~h~--~~V~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
+..|.|++++|.-.+.+ .++.|.++..+++- -..+...+.. +.+.. ..|...++-.+..+|..+..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 34789999998743444 79999999887653 2233333322 22221 23455567677788888999999886
Q ss_pred E--eCCCCCeeee---eccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEE-EEe-CCCCcE
Q 024372 88 W--DALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-AWL-HSDQTI 160 (268)
Q Consensus 88 w--~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~ 160 (268)
+ |..+++.... .--..|+.--.|+..++.-+-+..|+-.-+|..+. +....-. . -..+..+ .|+ +..+-.
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spl-s-~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPL-S-LKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEecc-c-hHHhhhhcccccccCCce
Confidence 6 4444442111 11122333333444333333334444444554321 1110000 0 0011111 122 222223
Q ss_pred EEEeeCCCeEEEEeCCCCce--EEeecCCCCEEEEEECCCCcEEEEeCC------C---------eEEEEeCCCceeeeE
Q 024372 161 LSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTADG------S---------SVKFWDANHFGLVKG 223 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~------~---------~v~~wd~~~~~~~~~ 223 (268)
++.+.. +.+++.-+..-+. +++++.+..+..+++.+....+....+ + -++++|-.+++.+..
T Consensus 687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~ 765 (1096)
T KOG1897|consen 687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS 765 (1096)
T ss_pred EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence 444444 7888876654322 345666677778888874443332211 1 377888888877766
Q ss_pred EeCCCCc--e---eeEEcCCCCCEEEeccC----------CCeEEEEECCCCcEEee
Q 024372 224 YNMPCNT--E---SASLEPKLGNIFIAGGE----------DMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 224 ~~~~~~~--~---~~~~~~~~~~~~~~gs~----------d~~i~~wd~~~g~~~~~ 265 (268)
+...... . ++.+..+.+.+++.|.. .|.|.+|.+..++.+..
T Consensus 766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 6554332 2 22344544777777642 36788888876554443
No 385
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.24 Score=43.70 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCc--------EEEEeeCCCcEEEEeCC-CCCeeeeeccCCeEEEEEEC
Q 024372 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--------FSASGSADFTAKLWDAL-TGDEKHSFEHKHIVRACAFS 111 (268)
Q Consensus 41 ~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~--------~l~s~s~D~~v~iw~~~-~~~~~~~~~~~~~v~~v~~~ 111 (268)
..+.-.|++.|+.+.++.-|...| +.|.|..+ -|+ |-.|..|.--|.. .+..+...+.+..++.-.|+
T Consensus 490 ~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs 566 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS 566 (776)
T ss_pred ccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcccccccc
Confidence 344445778888888888886654 66777532 233 3334444333433 33333333333333333332
Q ss_pred C----CCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCC
Q 024372 112 E----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 112 ~----~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 176 (268)
. ..-+++.++..|.||+||- -+..-...+......|..+....+|.+++++|- .++.+-|++
T Consensus 567 s~~tTesGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred ccccccCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 2 3457899999999999993 222222334445567888888899999999983 688888885
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.91 E-value=1.3 Score=40.27 Aligned_cols=186 Identities=18% Similarity=0.184 Sum_probs=105.9
Q ss_pred cEEEEeeCCCcEEEEeCCCCCeeeeeccCCe--EE----------EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHI--VR----------ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (268)
Q Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~--v~----------~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (268)
..+..++.++.|+-.|..+++.+-.+..... +. .+.+ .+..++.++.|+.+.-+|..+++...+..
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 3445566678899999999988777653221 11 1111 23456677888988888987776443322
Q ss_pred c-CCc-c-cEEEEEEeCCCCcEEEEee-----CCCeEEEEeCCCCceEEeecCCC-------------------------
Q 024372 142 G-NSS-G-SIRTVAWLHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETKS------------------------- 188 (268)
Q Consensus 142 ~-~~~-~-~v~~~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~------------------------- 188 (268)
. .+. + .+.+--... ++.+++..+ .+|.|.-+|.++|+.+-.+....
T Consensus 148 ~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 1 111 0 111100011 234444332 25789999999999876543210
Q ss_pred --------CEEEEEECCCCcEEE--EeC----CC-----------eEEEEeCCCceeeeEEeC-CC---------Cceee
Q 024372 189 --------PVTSAEVSRDGRYIT--TAD----GS-----------SVKFWDANHFGLVKGYNM-PC---------NTESA 233 (268)
Q Consensus 189 --------~v~~~~~s~~g~~l~--~~~----~~-----------~v~~wd~~~~~~~~~~~~-~~---------~~~~~ 233 (268)
......+.|...++. ++. ++ .|.--|+++++..-.|+. +. .....
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 122345555544332 222 11 466678888877666654 21 12222
Q ss_pred EEcCCCCC---EEEeccCCCeEEEEECCCCcEE
Q 024372 234 SLEPKLGN---IFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 234 ~~~~~~~~---~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
.. +.+|+ .++.+..++.+++.|-.||+.+
T Consensus 307 d~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DL-KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred Ee-ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 22 22455 7778999999999999999986
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.75 E-value=1.2 Score=38.79 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccC---cEEEEEecCCCcEEEEeeC------------------
Q 024372 29 PDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA------------------ 81 (268)
Q Consensus 29 ~dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~s~------------------ 81 (268)
|+|.+++|+-.| |-+.+.|.++-+.........+ --+..-+.|....++|..+
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 578888887322 2345677777777777754322 2345556777777777654
Q ss_pred --CCcEEEEeCCCCCeeeeeccCC---eEEEEEE--CCCCCEEEEee--CCCeEEEEECCCCCCCC---eEecC------
Q 024372 82 --DFTAKLWDALTGDEKHSFEHKH---IVRACAF--SEDTHLLLTGG--FEKILRIFDLNRPDAPP---REVGN------ 143 (268)
Q Consensus 82 --D~~v~iw~~~~~~~~~~~~~~~---~v~~v~~--~~~~~~l~s~~--~d~~i~~~d~~~~~~~~---~~~~~------ 143 (268)
.+++.+||+.+.+.++++...+ ...-+.| .|+...-++|+ .....++|-...++... ..+..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 3689999999999999887542 2334455 44444333332 22333333322221100 01100
Q ss_pred ---C--------cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCC-c--eEEeecC-----------------CCCEEE
Q 024372 144 ---S--------SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-K--IVQTLET-----------------KSPVTS 192 (268)
Q Consensus 144 ---~--------~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~--~~~~~~~-----------------~~~v~~ 192 (268)
. .+-++.|..+.++..+.+++.-+|.||-||+..- . .+.++.. .+..+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 0 1346788889999999999999999999999653 2 2222211 123467
Q ss_pred EEECCCCcEEE
Q 024372 193 AEVSRDGRYIT 203 (268)
Q Consensus 193 ~~~s~~g~~l~ 203 (268)
+.+|.||+.|-
T Consensus 379 vqlS~DGkRlY 389 (461)
T PF05694_consen 379 VQLSLDGKRLY 389 (461)
T ss_dssp EEE-TTSSEEE
T ss_pred EEEccCCeEEE
Confidence 88899998763
No 388
>PHA02713 hypothetical protein; Provisional
Probab=95.66 E-value=0.59 Score=42.75 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=43.4
Q ss_pred CCcEEEEEeCC------CCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCC-----cEEEEeCCCCCeee-
Q 024372 30 DGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEKH- 97 (268)
Q Consensus 30 dg~~l~s~s~d------~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~- 97 (268)
++...+.|+.+ .++..||..++++...-.-....-.......++.+.+.||.++ ++..||..++.=..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45566666653 2345677777765321111111111111233566667777654 47778876653211
Q ss_pred -eeccCCe-EEEEEECCCCCEEEEeeCC
Q 024372 98 -SFEHKHI-VRACAFSEDTHLLLTGGFE 123 (268)
Q Consensus 98 -~~~~~~~-v~~v~~~~~~~~l~s~~~d 123 (268)
....+.. ...+. -++++.+.|+.+
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRT 408 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCC
Confidence 1111111 11122 257777777755
No 389
>PHA03098 kelch-like protein; Provisional
Probab=95.58 E-value=0.86 Score=41.41 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred CCcEEEEeeCCC------cEEEEeCCCCCeeeeeccC---CeEEEEEECCCCCEEEEeeCC-----CeEEEEECCCCCCC
Q 024372 72 NALFSASGSADF------TAKLWDALTGDEKHSFEHK---HIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP 137 (268)
Q Consensus 72 ~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~s~~~d-----~~i~~~d~~~~~~~ 137 (268)
++.+++.||.++ .+..||..++.-......+ .....+. .++++.+.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666542 4666777655432211111 1111222 256777777765 23556776543211
Q ss_pred C-eEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEEeCCCCceEE--eecCCCCEEEEEECCCCcEE-EEeCC-
Q 024372 138 P-REVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYI-TTADG- 207 (268)
Q Consensus 138 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s~~g~~l-~~~~~- 207 (268)
. ......... .+++. .++..++.+|... +.+..||+.+.+=.. .+.....-.++ ...++++. ++|.+
T Consensus 372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 0 001111111 11121 2333334443211 357888987654221 11111111122 22344444 44321
Q ss_pred -------CeEEEEeCCCcee--eeEEeCCCCceeeEEcCCCCCEEEeccCC-----CeEEEEECCCCcE
Q 024372 208 -------SSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ 262 (268)
Q Consensus 208 -------~~v~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~~ 262 (268)
..+..||.++.+. +.....+......+. . ++++++.||.+ ..|.+||..+.+-
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-F-NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-E-CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 1378888865432 322222211112222 2 57888888764 4689999876653
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.58 E-value=0.043 Score=31.92 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=26.7
Q ss_pred cCCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeC
Q 024372 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG 48 (268)
Q Consensus 15 h~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~ 48 (268)
-..+|..++|+| ...+||.|+.+|.|.++..
T Consensus 10 l~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCP---TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECC---CCCEEEEEECCCeEEEEEC
Confidence 345799999996 6779999999999999877
No 391
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.58 E-value=1.3 Score=37.92 Aligned_cols=225 Identities=20% Similarity=0.165 Sum_probs=113.0
Q ss_pred CCCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEE-EeeCc----------------cCcEEEEEecCCCcEEEE
Q 024372 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGH----------------KGAVWSCCLDANALFSAS 78 (268)
Q Consensus 16 ~~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~-~~~~h----------------~~~V~~~~~~~~~~~l~s 78 (268)
...+....|+| +|+.+|-. .+..+.+++..+++.++ +..|- -+.-.++-|+||+++||.
T Consensus 42 ~~~~~~~~~sP---~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 42 PPKLQDAKWSP---DGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp ETTBSEEEE-S---SSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred ccccccceeec---CCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 45677888885 89888765 56788888877664332 11220 011245679999999886
Q ss_pred eeCC-CcEEEEeC-----------------------------------CCCCeee-eec-----cCCeEEEEEECCCCCE
Q 024372 79 GSAD-FTAKLWDA-----------------------------------LTGDEKH-SFE-----HKHIVRACAFSEDTHL 116 (268)
Q Consensus 79 ~s~D-~~v~iw~~-----------------------------------~~~~~~~-~~~-----~~~~v~~v~~~~~~~~ 116 (268)
...| ..|+.+.+ .+++... ... ....+..+.|.++++.
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~ 197 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR 197 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence 6533 33333322 1111100 000 1224667888888873
Q ss_pred EEE--eeCCC---eEEEEECCCCCCCCeEecCCcccE---EEEEEe-CCCCcEEEEeeCCCe--EEEEeCCCCceEEeec
Q 024372 117 LLT--GGFEK---ILRIFDLNRPDAPPREVGNSSGSI---RTVAWL-HSDQTILSSCTDSGG--VRLWDARSGKIVQTLE 185 (268)
Q Consensus 117 l~s--~~~d~---~i~~~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~d~~--i~iwd~~~~~~~~~~~ 185 (268)
|+. ...+. .+.+.|..++...........+.+ ....+. +++..++.....+|. |.+.+...+...+...
T Consensus 198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~ 277 (353)
T PF00930_consen 198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS 277 (353)
T ss_dssp EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-
T ss_pred EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc
Confidence 333 22222 244556655433222222222232 234444 566666555556664 5556766666444334
Q ss_pred CCCCEEE-EEECCCCcEEE-EeC-----CCeEEEEeCCCceeeeEEeCCCCc-eeeEEcCCCCCEEEe
Q 024372 186 TKSPVTS-AEVSRDGRYIT-TAD-----GSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIA 245 (268)
Q Consensus 186 ~~~~v~~-~~~s~~g~~l~-~~~-----~~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 245 (268)
+.-.|.. +.++++++.|. .+. ...+..-++...+.++.+.-.... ....++| ++++++-
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp-dg~y~v~ 344 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP-DGKYYVD 344 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T-TSSEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC-CCCEEEE
Confidence 4455644 67788876542 332 235555566622333434333333 3677777 5776663
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.087 Score=50.06 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=63.3
Q ss_pred EEEEeeCCCeEEEEeCCCCce--EEeecCCCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee---
Q 024372 160 ILSSCTDSGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA--- 233 (268)
Q Consensus 160 ~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~--- 233 (268)
.++.|++.|.+-..|....=. .+-.....+|.+++|+.+|+++..| .+|.|.+||....+.++.+.....+...
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 455667778888888765311 2222345789999999999998877 6789999999988888877654332222
Q ss_pred -EEcCCCCCEEEeccCCCeEEEEEC
Q 024372 234 -SLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 234 -~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
.... .++.+.++-..|. +|+.
T Consensus 181 v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeC-CCcEEEEccCCCc--eEEE
Confidence 2223 3556666655554 4553
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.42 E-value=1.3 Score=36.97 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCC-CCe
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDE 95 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~-~~~ 95 (268)
+.+.++.-. +||.+++.++.-.-.+-|+.-...+...-+.-...|..+.|.|++.+.+. .+.+.+++=+... ...
T Consensus 145 gs~~~~~r~---~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 145 GSINDITRS---SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp --EEEEEE----TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred ceeEeEEEC---CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 456666655 59988876655544456776544444444445678999999999876543 4888888877211 111
Q ss_pred eee--ec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 96 KHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 96 ~~~--~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
-.. .. ...-+..++|.++..+.++|+....++ ....++ .-+... ....-.+.+.|.+++.- ++-| .+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~g-f~lG-~~ 295 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV--STDGGK-TWQKDRVGENVPSNLYRIVFVNPDKG-FVLG-QD 295 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE--ESSTTS-S-EE-GGGTTSSS---EEEEEETTEE-EEE--ST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE--eCCCCc-cceECccccCCCCceEEEEEcCCCce-EEEC-CC
Confidence 000 11 122378899999888888776543332 323332 222221 22234677888765443 4444 44
Q ss_pred CeEEEE
Q 024372 168 GGVRLW 173 (268)
Q Consensus 168 ~~i~iw 173 (268)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 766544
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.12 Score=49.17 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=63.9
Q ss_pred CCcEEEEeeCCCcEEEEeCCCCCe--eeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCccc--
Q 024372 72 NALFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-- 147 (268)
Q Consensus 72 ~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~-- 147 (268)
.+..++.|+..|.+-..|+..+-. ...-..+.+|.+++|+.+|..++.|-.+|.|.+||+...+ ..+.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence 345677777777888877765422 2222356789999999999999999999999999987643 34444333333
Q ss_pred -EEEEEEeCCCCcEEEEeeCCCeEEEEeC
Q 024372 148 -IRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (268)
Q Consensus 148 -v~~~~~~~~~~~~~~~~~~d~~i~iwd~ 175 (268)
+..+.+..++. .+.++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 34444554444 3444333232 5654
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.08 E-value=3.2 Score=39.46 Aligned_cols=233 Identities=17% Similarity=0.131 Sum_probs=116.0
Q ss_pred EEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccC--------cEEEEEecC----------------CCcEEEE
Q 024372 23 FYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--------AVWSCCLDA----------------NALFSAS 78 (268)
Q Consensus 23 ~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~--------~V~~~~~~~----------------~~~~l~s 78 (268)
...|+-- +..|..++.++.+.-.|..+|+.+=++.-... ..+.+++-. .+..+..
T Consensus 187 e~TPlvv-gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 187 QATPLKV-GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred ccCCEEE-CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 3444332 34677788888888889999986544432111 012223311 2335667
Q ss_pred eeCCCcEEEEeCCCCCeeeeeccCCeEE-------------EEEECC--CCCEEEEeeC----------CCeEEEEECCC
Q 024372 79 GSADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNR 133 (268)
Q Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~~v~-------------~v~~~~--~~~~l~s~~~----------d~~i~~~d~~~ 133 (268)
+..|+.+.-.|..+++....+.....+. ...-.| .+..++.|+. ++.|+-+|.++
T Consensus 266 ~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 266 PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 7789999999999999887664332221 011122 1345556643 57899999988
Q ss_pred CCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCC-eEEEEeCCCCceEEeecCCCC-EEEEEECC-CCcEEEEeCCCeE
Q 024372 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRLWDARSGKIVQTLETKSP-VTSAEVSR-DGRYITTADGSSV 210 (268)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~-~g~~l~~~~~~~v 210 (268)
++..-+........ ... .+++. ....++... ..--+|.+.+....-.....+ ...-.-.| ++.+ .+.|
T Consensus 346 Gkl~W~~~~g~p~~-~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y-----~~sl 416 (764)
T TIGR03074 346 GALVWAWDPGNPDP-TAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKY-----SSSL 416 (764)
T ss_pred CcEeeEEecCCCCc-ccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccc-----cceE
Confidence 87554433211111 000 11222 122121111 122334443332211110000 00000001 1111 2355
Q ss_pred EEEeCCCceeeeEEeC-C---------CCceeeEEcCCCCC---EEEeccCCCeEEEEECCCCcEEee
Q 024372 211 KFWDANHFGLVKGYNM-P---------CNTESASLEPKLGN---IFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 211 ~~wd~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~---~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
.-.|.++++..-.|+. + .......+...+|+ .++.++.++.+++.|-+||+++-.
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 5566666665554543 2 22222333221343 788899999999999999998754
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=94.99 E-value=1.8 Score=38.87 Aligned_cols=182 Identities=9% Similarity=0.023 Sum_probs=82.7
Q ss_pred CCcEEEEeeCCC-----cEEEEeCCCCCeeeeec--cCC-eEEEEEECCCCCEEEEeeCC--CeEEEEECCCCCCC-CeE
Q 024372 72 NALFSASGSADF-----TAKLWDALTGDEKHSFE--HKH-IVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAP-PRE 140 (268)
Q Consensus 72 ~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~--~~~-~v~~v~~~~~~~~l~s~~~d--~~i~~~d~~~~~~~-~~~ 140 (268)
++.+++.||.++ ++..||..++.-....+ .+. ....+ ..++++.+.|+.+ ..+..||....... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455566777543 45567776544222111 111 11112 2357777777754 34667776432110 001
Q ss_pred ecCCcccEEEEEEeCCCCcEEEEeeCC--CeEEEEeCCCCceEEeecCCCC-EEEEEECCCCcEEEEeCCCeEEEEeCCC
Q 024372 141 VGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSVKFWDANH 217 (268)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~v~~wd~~~ 217 (268)
....... .+++. -++..++++|.+. ..+..||.++.+=...-....+ ....+..-+|++.+.| +.+.+||.++
T Consensus 349 l~~~r~~-~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCN-PAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESS 424 (480)
T ss_pred CCCCCcc-cEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCC
Confidence 1111111 11221 2333334444221 3467788876542221111111 1122234456555544 3467788765
Q ss_pred cee--eeEEeCCCCceeeEEcCCCCCEEEeccCC-----CeEEEEECCCCc
Q 024372 218 FGL--VKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE 261 (268)
Q Consensus 218 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-----~~i~~wd~~~g~ 261 (268)
..- +.....+......+.. +|++++.||.+ ..|.+||..+++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 432 2222222222222222 58899999864 468899987665
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.95 E-value=3 Score=38.37 Aligned_cols=186 Identities=14% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCcEEEEEeCC-C-----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCc-----EEEEeCCCCCeeee
Q 024372 30 DGFFLVSASKD-S-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT-----AKLWDALTGDEKHS 98 (268)
Q Consensus 30 dg~~l~s~s~d-~-----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~ 98 (268)
+|+..++|+.| + ++-.||..++++...-.-.......-.-.-+|.+.|.||.||. +-.||..+.+=...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 57788899998 3 4456788888876422211111111111235777788998864 55566554432111
Q ss_pred eccCCeEEEE-EECCCCCEEEEeeCCCe------EEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCCC--
Q 024372 99 FEHKHIVRAC-AFSEDTHLLLTGGFEKI------LRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSG-- 168 (268)
Q Consensus 99 ~~~~~~v~~v-~~~~~~~~l~s~~~d~~------i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~-- 168 (268)
.+........ ...-++++.+.|+.++. +..||..+..... ........... ++.. ++ .+.+.|+.|+
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTS 488 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCC
Confidence 1111111111 11236778888886654 4567765432211 01111111111 2322 23 4444444444
Q ss_pred ---eEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEEEeCCC-----eEEEEeCCCc
Q 024372 169 ---GVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITTADGS-----SVKFWDANHF 218 (268)
Q Consensus 169 ---~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~-----~v~~wd~~~~ 218 (268)
+|..+|.++.+=... +........++...+..|++++.++ +|..||..+.
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 377788876653332 2111122233344444555555443 5666665543
No 398
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.65 E-value=0.32 Score=38.69 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=41.7
Q ss_pred CCCcEEEEeeCCCeEEEEeCCCCceEEee-------c--------CCCCEEEEEECCCCcEEEEeCCCeEEEEeCC
Q 024372 156 SDQTILSSCTDSGGVRLWDARSGKIVQTL-------E--------TKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (268)
Q Consensus 156 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~-------~--------~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~ 216 (268)
.+.+ +.+-+.+|.+++||+.+++++..- . ....+..+.++.+|.-+++-+++....||..
T Consensus 21 ~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3444 445566799999999998765332 1 2345888899999987776556677888753
No 399
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.62 E-value=0.23 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=29.6
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEE
Q 024372 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV 195 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 195 (268)
|+++.++++...+++|.++|+.+++.+..+........+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45666777777789999999999888887765433444444
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.53 E-value=2.1 Score=34.73 Aligned_cols=195 Identities=11% Similarity=0.158 Sum_probs=103.2
Q ss_pred EeeCccCcEEEEEecCCCc-EEEEeeCCCcEEEEeCCCCCeeeeeccCC--eEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 56 TFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 56 ~~~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
.+.+-...+..++|.|+.. +++.....+.|.-.+. +++.++.+.... -.-.+.+..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445455699999999765 5555666777777776 467766665332 34567777777777766678889888874
Q ss_pred CCCCC--CeE-----ec---CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCC---CceEEee-----c----CCCCE
Q 024372 133 RPDAP--PRE-----VG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTL-----E----TKSPV 190 (268)
Q Consensus 133 ~~~~~--~~~-----~~---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~-----~----~~~~v 190 (268)
..... ... .. ..+..+..++|.+.+..++++. +..-.+|+.++. ...+... . ....+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 32211 111 11 1334578899999888888764 445566666543 2222211 1 12347
Q ss_pred EEEEECCC-CcEEE-EeCCCeEEEEeCCCceeeeEEeCCC----------CceeeEEcCCCCCEEEeccCCCeEEEE
Q 024372 191 TSAEVSRD-GRYIT-TADGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 191 ~~~~~s~~-g~~l~-~~~~~~v~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gs~d~~i~~w 255 (268)
.++.++|. +.+++ +..++.|...| ..++.+..+.... .+.-+++.+ +|.++++. +-...|++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence 78889886 45544 45678888899 5566666666543 244566666 57655554 44344443
No 401
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=3.2 Score=40.72 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=40.0
Q ss_pred EEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 190 v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
+.+..+-.....+....-+.+-+|+.......+.|..+.... ...++.++++-.|+.+..||+..|+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~h~Dgs~~fWd~s~g~~~~ 270 (993)
T KOG1983|consen 201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-----SRDGSHFVSYHTDGSYAFWDVSSGKLQI 270 (993)
T ss_pred cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-----ccCCceEEEEEecCCEEeeecCCCceee
Confidence 333333333334444444456666643332233333322211 3368999999999999999999887643
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=2.9 Score=35.09 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=54.6
Q ss_pred eEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeC--CCeEEEEeCCC--c---eeeeEEeC---CCCceeeEEcC
Q 024372 169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD--GSSVKFWDANH--F---GLVKGYNM---PCNTESASLEP 237 (268)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~--~~~v~~wd~~~--~---~~~~~~~~---~~~~~~~~~~~ 237 (268)
.|.-.|. .+..++.+.. -...|.++||||++.+..++ .+.|.-|++.. . .....+.. +..+...+...
T Consensus 144 ~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 144 SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 3444454 4555554443 34568999999997765543 36777776642 1 11111111 22334445554
Q ss_pred CCCCEEEeccCCC-eEEEEECCCCcEEeec
Q 024372 238 KLGNIFIAGGEDM-WVHVFDFHTGEQIAIT 266 (268)
Q Consensus 238 ~~~~~~~~gs~d~-~i~~wd~~~g~~~~~~ 266 (268)
+|.+.+++-.++ .|.+|+.. |+++..+
T Consensus 223 -dG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 223 -DGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred -CCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 577775554443 89999987 8888764
No 403
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=2.3 Score=37.29 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=90.3
Q ss_pred eeEEEecCCCCCcEEEEEeCCCCeEEeeCCCC--C-eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCee
Q 024372 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETG--D-WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (268)
Q Consensus 20 ~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~--~-~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 96 (268)
+.+.|. |.+.++-+...|.+.=|-+.-. . .+..-...+++|.++.|++|.+.+|.--.|++|.+.+....+..
T Consensus 26 ngvFfD----DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFD----DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeec----cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 456665 4444555666666655543321 1 22222345779999999999999999889999999998655544
Q ss_pred eeecc-----CCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEee-CCCeE
Q 024372 97 HSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGV 170 (268)
Q Consensus 97 ~~~~~-----~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~~i 170 (268)
....+ ...|....|..+. -+|--...| +-+|.........+....+...|+...|.++...++.+.+ ..+++
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 43332 2236677776553 344434333 5666554333344445556667888888887765444433 33444
Q ss_pred EEEeCCCC
Q 024372 171 RLWDARSG 178 (268)
Q Consensus 171 ~iwd~~~~ 178 (268)
.=+.++++
T Consensus 180 npf~~~~~ 187 (657)
T KOG2377|consen 180 NPFHFRAG 187 (657)
T ss_pred ccEEEeec
Confidence 33444443
No 404
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.96 E-value=4.1 Score=35.81 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=90.4
Q ss_pred CCeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe-------eCccCcEEEEEecCCCcEEEEeeCCCcEEEE-
Q 024372 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-------EGHKGAVWSCCLDANALFSASGSADFTAKLW- 88 (268)
Q Consensus 17 ~~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~-------~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw- 88 (268)
+.|.++.|. +...|++-..||.++++|.. |+....+ .-....+....+..+|-.+.+++ +.+.+-
T Consensus 81 ~~iv~~~wt----~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~--~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWT----DDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN--NRFYVVN 153 (410)
T ss_pred CCEEEEEEC----CCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCC--CeEEEEe
Confidence 677888886 34578889999999999976 4441111 11122233334444565555543 333332
Q ss_pred eCCCCCeeeee-c--------cCC-eEE-EEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCC
Q 024372 89 DALTGDEKHSF-E--------HKH-IVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (268)
Q Consensus 89 ~~~~~~~~~~~-~--------~~~-~v~-~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (268)
+.......+.. . +.. ... ...++.+....+....++.+.+.+-... ... ...+++..++.+|++
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----~~i-~~~~~i~~iavSpng 228 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----KQI-DSDGPIIKIAVSPNG 228 (410)
T ss_pred CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc----ccc-cCCCCeEEEEECCCC
Confidence 22211111111 0 000 000 1234445555555555566664442211 111 124678999999988
Q ss_pred CcEEEEeeCCCeEEEEeCCCCceEEeecCC--CCEEEEEECCCCcE
Q 024372 158 QTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRY 201 (268)
Q Consensus 158 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~s~~g~~ 201 (268)
+++. .-.++|.+.+....-.+.+..+... .....+.|..+...
T Consensus 229 ~~iA-l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 229 KFIA-LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CEEE-EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 7654 4456689999887666666555543 44566777666433
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.85 E-value=0.92 Score=42.64 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=18.5
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEee
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRN 47 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~ 47 (268)
.|..+..+ ++|.+||..+..+-+.+.-
T Consensus 86 ~v~~i~~n---~~g~~lal~G~~~v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLN---PTGSLLALVGPRGVVVLEL 112 (717)
T ss_pred eEEEEEEC---CCCCEEEEEcCCcEEEEEe
Confidence 45666666 4888888888876665543
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.80 E-value=3.5 Score=34.51 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=81.5
Q ss_pred eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC-CeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (268)
Q Consensus 53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~ 131 (268)
+......-.+.+..+..++++.+++.++.-....-|+-... -..+.......|..+.|.|++.+.+.+ ..+.++.=+.
T Consensus 136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 44444455677888888999999888877767778886432 233333456789999999998776644 7788887662
Q ss_pred -CCCCC-CCeEecC-Ccc-cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEE
Q 024372 132 -NRPDA-PPREVGN-SSG-SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYIT 203 (268)
Q Consensus 132 -~~~~~-~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~ 203 (268)
...+. ....... ..+ .+..++|.+++. +.+++.. |.+ +.....|+.-+.-.. ......+.|.++.+-++
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 11110 0000111 122 367889987654 4555544 544 445666776554432 34578888877777777
Q ss_pred EeCCCeEEEE
Q 024372 204 TADGSSVKFW 213 (268)
Q Consensus 204 ~~~~~~v~~w 213 (268)
.+.++.+.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 7877766543
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.80 E-value=1.6 Score=39.44 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=75.0
Q ss_pred eeecEEeeecCCCeeeEEEecCC-CCCcEEEEEeCCCCeEEeeCC-----CCCeEEEeeCcc-C--cE--EEEEecCCCc
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPIT-PDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHK-G--AV--WSCCLDANAL 74 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~-~dg~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~h~-~--~V--~~~~~~~~~~ 74 (268)
+.-..++ |..+-|.+++|.|.- .+--.|++...-+.|.||.+. +++++-.-.++- . +| ..|-|+|...
T Consensus 47 fGds~vi-GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~ 125 (671)
T PF15390_consen 47 FGDSKVI-GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA 125 (671)
T ss_pred cCCccEe-eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc
Confidence 3344444 677889999999963 222256667778888999754 234332211111 1 11 3456899888
Q ss_pred EEEEe-eCCCcEEEEeCC--CCCeeeeeccCCeEEEEEECCCCCEEEEe-eCCCeEEEEEC
Q 024372 75 FSASG-SADFTAKLWDAL--TGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDL 131 (268)
Q Consensus 75 ~l~s~-s~D~~v~iw~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~s~-~~d~~i~~~d~ 131 (268)
+|+.- ++| .-.+.++. ....+..+.....|.|.+|.+||+.|+.+ +..-...+||-
T Consensus 126 iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 126 ILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 77543 333 32334443 33445566677889999999999877664 33445678874
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.59 E-value=0.79 Score=40.04 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=53.3
Q ss_pred CEEEEEECCCCcEEEEeCC-CeEEEEeCCCceeeeEEeCCCCceee---EEcC---------------CCCCEEEe-ccC
Q 024372 189 PVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCNTESA---SLEP---------------KLGNIFIA-GGE 248 (268)
Q Consensus 189 ~v~~~~~s~~g~~l~~~~~-~~v~~wd~~~~~~~~~~~~~~~~~~~---~~~~---------------~~~~~~~~-gs~ 248 (268)
.+.++..+|++++.+..++ |.|.++|+.+...++.+......... .... +..-+|+. +-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 4789999999999887765 89999999887776655543221110 0000 01123443 566
Q ss_pred CCeEEEEECCCCcEEeec
Q 024372 249 DMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 249 d~~i~~wd~~~g~~~~~~ 266 (268)
-+.|.+|.+++|..+..+
T Consensus 389 Rg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAF 406 (415)
T ss_pred CCeEEEEecCCCCEEEEE
Confidence 889999999999998875
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.47 E-value=0.51 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=24.6
Q ss_pred ccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCC
Q 024372 146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 146 ~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~ 177 (268)
|.+.++.|+|+.. -+++-.-..+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4678899997555 4666656668999999995
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.34 E-value=8 Score=37.24 Aligned_cols=229 Identities=12% Similarity=0.147 Sum_probs=109.2
Q ss_pred CCCcEEEEEeCCCCeEEe--eCCCCCeEEEeeCc--cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCe
Q 024372 29 PDGFFLVSASKDSSPMLR--NGETGDWIGTFEGH--KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI 104 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw--~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 104 (268)
.|+.+|.++..||.+..+ |..+|.+-..=+.| ..|+.--.|+..+..-+-+..|.-..+|-.+..-+...++-+..
T Consensus 593 ~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev 672 (1096)
T KOG1897|consen 593 GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEV 672 (1096)
T ss_pred ccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHh
Confidence 468899999999999765 55555432111111 33444445655543323334465555555432222222222222
Q ss_pred EEEEEECCC--CCEEEEeeCCCeEEEEECCCC-CCCCeEecCCcccEEEEEEeCCCCcEEEEeeC-----------C---
Q 024372 105 VRACAFSED--THLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-----------S--- 167 (268)
Q Consensus 105 v~~v~~~~~--~~~l~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------d--- 167 (268)
-..+.|+.+ +..++++. .+.+++.-+..- +.-.+.... ......+++.+.. .++...+. .
T Consensus 673 ~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 673 NHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred hhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCChhheEecccc-eEEEEEecccccchhhcCCcceE
Confidence 223344432 23444443 344566554321 111222221 2233344443311 11221111 1
Q ss_pred CeEEEEeCCCCceEEeecCC-----CCEEEEEECCC-CcEEEEeC-----------CCeEEEEeCCCceeee---EEeCC
Q 024372 168 GGVRLWDARSGKIVQTLETK-----SPVTSAEVSRD-GRYITTAD-----------GSSVKFWDANHFGLVK---GYNMP 227 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~~-g~~l~~~~-----------~~~v~~wd~~~~~~~~---~~~~~ 227 (268)
..++++|-.+.+.++..+.. ..+.++.|..| +.+++.|. .|.|.++.......++ .....
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 24788888888877654422 23555668777 66655432 2466676654422222 22222
Q ss_pred CCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEe
Q 024372 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIA 264 (268)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~ 264 (268)
..+.++... .|+++|+- +..|++|+..+++++.
T Consensus 830 Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 830 GAVYALVEF--NGKLLAGI--NQSVRLYEWTTERELR 862 (1096)
T ss_pred cceeehhhh--CCeEEEec--CcEEEEEEccccceeh
Confidence 233344333 36655543 4459999987775543
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=93.31 E-value=5.9 Score=35.60 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=50.8
Q ss_pred CCcEEEEEeCCC-----CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC--CcEEEEeCCCCCeeeeeccC
Q 024372 30 DGFFLVSASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKHSFEHK 102 (268)
Q Consensus 30 dg~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D--~~v~iw~~~~~~~~~~~~~~ 102 (268)
++.+.+.|+.++ ++..||..++++...-.-............++.+.+.||.+ ..+..||..++.=....+-+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 455667777653 34567888877653221111111111123456666777754 35777876554321111111
Q ss_pred CeE-EEEEECCCCCEEEEeeCCC---eEEEEECCC
Q 024372 103 HIV-RACAFSEDTHLLLTGGFEK---ILRIFDLNR 133 (268)
Q Consensus 103 ~~v-~~v~~~~~~~~l~s~~~d~---~i~~~d~~~ 133 (268)
.+. ......-++++.+.|+.++ .+-.||..+
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence 111 1111122577777777553 355777654
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.05 E-value=5.4 Score=34.43 Aligned_cols=140 Identities=15% Similarity=0.206 Sum_probs=70.9
Q ss_pred EEEEEecCCCcEEEEee-----------CCC-cEEEEeCCCC--C--eeeeec-cCCeEEEEEECCCCCEEEEeeCCCeE
Q 024372 64 VWSCCLDANALFSASGS-----------ADF-TAKLWDALTG--D--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKIL 126 (268)
Q Consensus 64 V~~~~~~~~~~~l~s~s-----------~D~-~v~iw~~~~~--~--~~~~~~-~~~~v~~v~~~~~~~~l~s~~~d~~i 126 (268)
...++|.+++.++++-. ..+ .|.+++-..+ + ....+. .......+.+.+++ +++ +......
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 34567777777665542 122 5666654322 2 122222 22345678888888 444 4444444
Q ss_pred EEEECCCCC-C--CCe----EecC----CcccEEEEEEeCCCCcEEEEeeC------------------CCeEEEEeCCC
Q 024372 127 RIFDLNRPD-A--PPR----EVGN----SSGSIRTVAWLHSDQTILSSCTD------------------SGGVRLWDARS 177 (268)
Q Consensus 127 ~~~d~~~~~-~--~~~----~~~~----~~~~v~~~~~~~~~~~~~~~~~~------------------d~~i~iwd~~~ 177 (268)
++.|.+... . ..+ .+.. +......+.+.|++..+++.++. .+.|.-+|..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 444543211 0 111 1111 12235667888876555544421 03455556654
Q ss_pred CceEEeec-CCCCEEEEEECCCCcEEEEeC
Q 024372 178 GKIVQTLE-TKSPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 178 ~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~ 206 (268)
++. ..+. .......++|+|+|+++++..
T Consensus 174 ~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 442 2232 233467899999999887643
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.03 E-value=1.4 Score=35.02 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEe-------e-------CccCcEEEEEecCCCcEEEEeeCCCcEEEEe
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTF-------E-------GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~-------~-------~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~ 89 (268)
.+++|++-+.+|.+.+||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 5779999999999999999998754221 1 1334455555555555444433 24445554
No 414
>PHA03098 kelch-like protein; Provisional
Probab=93.00 E-value=6.9 Score=35.57 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=48.9
Q ss_pred CCcEEEEEeCCC------CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-----CcEEEEeCCCCCeeee
Q 024372 30 DGFFLVSASKDS------SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGDEKHS 98 (268)
Q Consensus 30 dg~~l~s~s~d~------~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~~~~ 98 (268)
++...+.|+.++ .+..||..++++...-.-...........-++.+.+-||.+ ..+..||..++.=...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 345556665543 35567888777642111111111111112356666777765 3466677665432111
Q ss_pred --eccCCeEEEEEECCCCCEEEEeeCC------CeEEEEECCCC
Q 024372 99 --FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRP 134 (268)
Q Consensus 99 --~~~~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d~~~~ 134 (268)
...+..-.+++ ..++++.+.|+.+ +.+..||+.+.
T Consensus 374 ~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 374 PPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 11111111111 2256777777632 34677887643
No 415
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.99 E-value=2.5 Score=30.53 Aligned_cols=105 Identities=13% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCcEEEEeeCCCeEEEEeCCC--------CceEEeecCCCCEEEEEECC-----CCcEEEEeCCCeEEEEeCCCceeeeE
Q 024372 157 DQTILSSCTDSGGVRLWDARS--------GKIVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKFWDANHFGLVKG 223 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~~~v~~wd~~~~~~~~~ 223 (268)
.+.+..+ +.-|+|.|.+... ...+..+.....+.+++-.| +...|..++...+..||+.+..-+--
T Consensus 10 ~pcL~~a-T~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 10 HPCLACA-TTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred ceeEEEE-ecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 3334333 3448899998753 33456677777787776543 23567777778999999976543322
Q ss_pred EeCCCCceeeEE--cCCCCCEEEeccCCCeEEEEECCCCcEE
Q 024372 224 YNMPCNTESASL--EPKLGNIFIAGGEDMWVHVFDFHTGEQI 263 (268)
Q Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~gs~d~~i~~wd~~~g~~~ 263 (268)
...+.+..++.+ ......-++..|.+-.|.-||.. |+++
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~-G~e~ 129 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE-GNEI 129 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC-CcEE
Confidence 233333333332 12223445555556668888853 5543
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.82 E-value=3.4 Score=34.08 Aligned_cols=112 Identities=11% Similarity=0.199 Sum_probs=77.8
Q ss_pred cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC--CCCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceee
Q 024372 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLV 221 (268)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~ 221 (268)
...+..+.|+|+...++++... ..-.+|=...|+.+.+++. -.....+.+..+|+|+++.+ ++.+.++.+.....+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3448899999999998888655 5555665667999988764 34567889999999988764 678888776544221
Q ss_pred ---e--EE-----eC-CCCceeeEEcCCCCCEEEeccCCCeEEEEECC
Q 024372 222 ---K--GY-----NM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 222 ---~--~~-----~~-~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~ 258 (268)
+ .+ .. +.+..-+++.+. ++.|..+=+-..+.+|.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEe
Confidence 1 11 11 445667788874 6667777777777777664
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.55 E-value=4.6 Score=32.35 Aligned_cols=210 Identities=14% Similarity=0.184 Sum_probs=107.5
Q ss_pred EEEEEeCCCCeEEeeCCCCCe-EEEeeCccCcEEEEEecCCC---cEEEEeeCCCcEEEEeC--CCCCeeeee-c-----
Q 024372 33 FLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANA---LFSASGSADFTAKLWDA--LTGDEKHSF-E----- 100 (268)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~-~~~~~~h~~~V~~~~~~~~~---~~l~s~s~D~~v~iw~~--~~~~~~~~~-~----- 100 (268)
+|..--..+.+.=||..+.+. ..++.+. ++..+.+.-.+ .+.+.++.--.|-=||- ......+++ +
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444555554477766542 2344432 13333332212 23344443333444773 223333332 1
Q ss_pred cCCeEEEEEECCCCCEEEEeeCC----------CeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeE
Q 024372 101 HKHIVRACAFSEDTHLLLTGGFE----------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (268)
Q Consensus 101 ~~~~v~~v~~~~~~~~l~s~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 170 (268)
.+...+.-..+|+|++. .|... +.++.|-+.. ........-+--+.++|..+...+...-+-+-+|
T Consensus 107 kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 22345556678888873 33221 3344443321 1111212223335678876666665555555678
Q ss_pred EEEe--CCCCce-----EEeecC-----CCCEEEEEECCCCcEEEEe-CCCeEEEEeCCCceeeeEEeCCCCceee-EEc
Q 024372 171 RLWD--ARSGKI-----VQTLET-----KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA-SLE 236 (268)
Q Consensus 171 ~iwd--~~~~~~-----~~~~~~-----~~~v~~~~~s~~g~~l~~~-~~~~v~~wd~~~~~~~~~~~~~~~~~~~-~~~ 236 (268)
.-|| ..+|.. +..+.. +...-.+++..+|++.++. .+++|.-.|..+++++..+..|.....+ +|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7787 555543 222221 1123455666778776554 6789999999999999999998765544 443
Q ss_pred CC-CCCEEEeccC
Q 024372 237 PK-LGNIFIAGGE 248 (268)
Q Consensus 237 ~~-~~~~~~~gs~ 248 (268)
.+ .+-+++|+..
T Consensus 263 Gkn~d~~yvT~aa 275 (310)
T KOG4499|consen 263 GKNLDILYVTTAA 275 (310)
T ss_pred CCCccEEEEEehh
Confidence 22 2345555554
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.41 E-value=4.4 Score=31.87 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred eCCCcEEEEeCCC--CCeeeeeccCCeEEEEEECCCCCEEEEeeC------CCeEEEE-ECCCC---CCCC--eEec---
Q 024372 80 SADFTAKLWDALT--GDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIF-DLNRP---DAPP--REVG--- 142 (268)
Q Consensus 80 s~D~~v~iw~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~------d~~i~~~-d~~~~---~~~~--~~~~--- 142 (268)
...+.|.+|++.+ .+....++.-+.|..+.++..|.+++|-=. ...+|+| +.+.. .... +..+
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v 114 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRV 114 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEccccc
Confidence 3456799999883 345667777788999999999999998421 2256666 33211 0000 1111
Q ss_pred -----------------CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce-E---Eeec-------CCCC--EEE
Q 024372 143 -----------------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-V---QTLE-------TKSP--VTS 192 (268)
Q Consensus 143 -----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~---~~~~-------~~~~--v~~ 192 (268)
....+..+++=.|-.+.+++++ + +.+.||.+..... . ..+. ++.. +..
T Consensus 115 ~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~ 192 (215)
T PF14761_consen 115 TPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-G-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQ 192 (215)
T ss_pred ccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-C-CEEEEEEEEEEEEecccccEEechhhhhheecCceEEE
Confidence 0122445677677778887765 3 7899998764432 1 1111 1111 222
Q ss_pred EEECCCCcEEEEeCCCeEEEEeC
Q 024372 193 AEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 193 ~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
+++ .+.|++.-++..+++..+
T Consensus 193 v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 193 VAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred EEE--EeeEEEEecCCEEEEEEE
Confidence 222 345777777777777654
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.31 E-value=4.9 Score=32.16 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=88.1
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEE-eeC--CCCCeEEEe---eC--ccCcEEEEEecCCCcEEEEeeCC--------
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPML-RNG--ETGDWIGTF---EG--HKGAVWSCCLDANALFSASGSAD-------- 82 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~i-w~~--~~~~~~~~~---~~--h~~~V~~~~~~~~~~~l~s~s~D-------- 82 (268)
+.++.| |+...-+..+.+...+.+.+ ||. +..+..+++ .. .+.+...-..+|+|++.+---.|
T Consensus 59 ~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~ 137 (310)
T KOG4499|consen 59 SAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPI 137 (310)
T ss_pred ceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecccccccccc
Confidence 334444 44322233444444444443 763 333444442 11 12334444568999885422222
Q ss_pred -CcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEE-EeeCCCeEEEEEC--CCCCCCCeE--e--cCC---cccE-EE
Q 024372 83 -FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDL--NRPDAPPRE--V--GNS---SGSI-RT 150 (268)
Q Consensus 83 -~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-s~~~d~~i~~~d~--~~~~~~~~~--~--~~~---~~~v-~~ 150 (268)
|.++.|-.. ++....+..-..-+.++|+.+.+.++ .-+.+-+|.-||. .++....+. + ... .... -.
T Consensus 138 ~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG 216 (310)
T KOG4499|consen 138 GGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG 216 (310)
T ss_pred ccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc
Confidence 344444432 11111111112234677887776665 4456677777873 333221110 0 000 0000 01
Q ss_pred EEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCC
Q 024372 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRD 198 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~ 198 (268)
++.. ..+++.+++...++|...|+.+|+.+.++.. ...+.+++|-.-
T Consensus 217 m~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 1222 2456777777778999999999999998864 455888888643
No 420
>PRK10115 protease 2; Provisional
Probab=92.24 E-value=10 Score=35.75 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=106.2
Q ss_pred CCCCcEEEEEeCC-----CCeEEeeCCCCCeEE-EeeCccCcEEEEEecCCCcEEE-EeeCC-----CcEEEEeCCCCC-
Q 024372 28 TPDGFFLVSASKD-----SSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSA-SGSAD-----FTAKLWDALTGD- 94 (268)
Q Consensus 28 ~~dg~~l~s~s~d-----~~i~iw~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~-s~s~D-----~~v~iw~~~~~~- 94 (268)
+|||++|+-+... .++++.|+.+|+.+. .+.+ .-..++|.+|++.|+ +.-.+ ..|+.+++.++.
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 5799888766322 245677888886432 2221 114588998886554 33222 467778888873
Q ss_pred -eeeeeccC-CeEE-EEEECCCCCEEEEee---CCCeEEEEECCCCCCCC-eEecCCcccEEEEEEeCCCCcEEEEeeCC
Q 024372 95 -EKHSFEHK-HIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (268)
Q Consensus 95 -~~~~~~~~-~~v~-~v~~~~~~~~l~s~~---~d~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 167 (268)
-...+... .... .+..+.+++.++..+ .++.+.+++........ .......+....+. ...+..++.+..+.
T Consensus 212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~ 290 (686)
T PRK10115 212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHG 290 (686)
T ss_pred HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCC
Confidence 23333321 2222 333454776555432 34568888853221111 12222222223322 22233334332211
Q ss_pred C--eEEEEeCC-CCceEEeecC--CCCEEEEEECCCCcEEEE-eCCC--eEEEEeCCCceeeeEEeCCCCcee--eEEc-
Q 024372 168 G--GVRLWDAR-SGKIVQTLET--KSPVTSAEVSRDGRYITT-ADGS--SVKFWDANHFGLVKGYNMPCNTES--ASLE- 236 (268)
Q Consensus 168 ~--~i~iwd~~-~~~~~~~~~~--~~~v~~~~~s~~g~~l~~-~~~~--~v~~wd~~~~~~~~~~~~~~~~~~--~~~~- 236 (268)
. .|...++. .++-...+.. ...+..+.++.+ .+++. -.++ .+.++|.... .+..+..+..... ....
T Consensus 291 ~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 368 (686)
T PRK10115 291 KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNP 368 (686)
T ss_pred CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccC
Confidence 2 34334554 2222222333 234777777744 33333 3344 4556665432 2333332211111 1122
Q ss_pred -CCCCCEEEeccC---CCeEEEEECCCCc
Q 024372 237 -PKLGNIFIAGGE---DMWVHVFDFHTGE 261 (268)
Q Consensus 237 -~~~~~~~~~gs~---d~~i~~wd~~~g~ 261 (268)
+..+.++++.+. -..++.||..+++
T Consensus 369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 369 EPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223455555433 3578889988765
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.19 E-value=0.17 Score=47.48 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=53.3
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEE-----------ecCCCcEEEEeeCCCcEE
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC-----------LDANALFSASGSADFTAK 86 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~-----------~~~~~~~l~s~s~D~~v~ 86 (268)
++.-+.|.|+.+..-++-.+-.++++++........ .-+++|...+..++ .+|||..+|+++.||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 446677888777778888888999998865544322 33456765554432 689999999999999999
Q ss_pred EEeCC
Q 024372 87 LWDAL 91 (268)
Q Consensus 87 iw~~~ 91 (268)
+|.+.
T Consensus 261 f~Qiy 265 (1283)
T KOG1916|consen 261 FYQIY 265 (1283)
T ss_pred eeeee
Confidence 99874
No 422
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.08 E-value=0.7 Score=30.95 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEeC
Q 024372 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 206 (268)
.+|.+.-||.++++..-.+..-...+.++++||+.+++.++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 34889999999988655555445689999999999877654
No 423
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.88 E-value=1.1 Score=40.93 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred CcEEEEEecC----CCcEEEEeeCCCcEEEEeCCCCCeeeee
Q 024372 62 GAVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF 99 (268)
Q Consensus 62 ~~V~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 99 (268)
+.+..+++.. +..++++.+.|+++|+||+.++.++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455566665 6788999999999999999999985543
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.86 E-value=6.7 Score=32.70 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=109.6
Q ss_pred EEEEecCCCcEEEEeeCCCcEEEEeCCC------C-Ceeeeec------cCCeEEEEEECCCC------------CEEEE
Q 024372 65 WSCCLDANALFSASGSADFTAKLWDALT------G-DEKHSFE------HKHIVRACAFSEDT------------HLLLT 119 (268)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~------~-~~~~~~~------~~~~v~~v~~~~~~------------~~l~s 119 (268)
+.++++|.+.+.++....++..+||... . ..+-++. .+...+.+.|+... ..++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 6788999998888888889999999861 1 1222322 12234555565422 23567
Q ss_pred eeCCCeEEEEECCCCCC----CCeEecC-CcccEE-EEEEe--CCCCcEEEEeeCCCeEEEEeCCCCceE--EeecC---
Q 024372 120 GGFEKILRIFDLNRPDA----PPREVGN-SSGSIR-TVAWL--HSDQTILSSCTDSGGVRLWDARSGKIV--QTLET--- 186 (268)
Q Consensus 120 ~~~d~~i~~~d~~~~~~----~~~~~~~-~~~~v~-~~~~~--~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~--- 186 (268)
++.||+|.-|....... ....... ..+.+. .+++- ..+..+.++-...++|.++|-.=.+.. ..+..
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 78899999997532221 1112221 224443 34433 334567777777789999985422111 00100
Q ss_pred --C-CC-----------EEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEeCCC---CceeeEE-----cCCCCCEE
Q 024372 187 --K-SP-----------VTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPC---NTESASL-----EPKLGNIF 243 (268)
Q Consensus 187 --~-~~-----------v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~ 243 (268)
. .+ |.-..-.++++.=.. ..-+.|-+||+. +..++.+.... .++-++. -.-++++|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 0 01 111222233322112 223578899985 34566564321 1222322 22257888
Q ss_pred EeccCCCeEEEEECCCCcEEee
Q 024372 244 IAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 244 ~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
+---.|+.|-.||..+|+.+..
T Consensus 265 VGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred EeecCCceeEEecCCCCceeee
Confidence 8767799999999988886654
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=5.2 Score=31.42 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=93.7
Q ss_pred eEEEecCCCCCcEEEEEeCCC--CeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEE-EEeeCCCcEEEEeCCCCCeee
Q 024372 21 DLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKH 97 (268)
Q Consensus 21 ~~~f~~~~~dg~~l~s~s~d~--~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~iw~~~~~~~~~ 97 (268)
++.+. +|.++.+.+.-| .|++||+.+|+.+..-.--...++.=-...-+..+ +---.|+....+|..+-++..
T Consensus 50 GL~~~----~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 50 GLEYL----DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred ceeee----CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 66664 678888887766 56779999887553322111122111111112222 223457777888887777766
Q ss_pred eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCe----EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR----EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 98 ~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
.++-+..=..++ .+++.|+.+....+++.-|..+-..... ..+..-..++.+.|.. +.+.+--.....|-.-
T Consensus 126 ~~~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd--G~lyANVw~t~~I~rI 201 (262)
T COG3823 126 RFSYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD--GELYANVWQTTRIARI 201 (262)
T ss_pred ccccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeec--cEEEEeeeeecceEEE
Confidence 665544444443 3455566666666777666543221111 1111122233444432 2333333333455555
Q ss_pred eCCCCceEEeecCC-------------CCEEEEEECCCC-cEEEEe
Q 024372 174 DARSGKIVQTLETK-------------SPVTSAEVSRDG-RYITTA 205 (268)
Q Consensus 174 d~~~~~~~~~~~~~-------------~~v~~~~~s~~g-~~l~~~ 205 (268)
|..+|+.+..++.. ...+.+++.|++ ++++++
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 88888887765431 235778888887 555554
No 426
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.66 E-value=6.2 Score=31.91 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=77.4
Q ss_pred EEEeCCCCCeeeee-ccCCeEEEEEECCCCCEEEEeeCC---CeEEEEECCC--CCCCCeEec---CCcccEEEEEEeCC
Q 024372 86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNR--PDAPPREVG---NSSGSIRTVAWLHS 156 (268)
Q Consensus 86 ~iw~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~s~~~d---~~i~~~d~~~--~~~~~~~~~---~~~~~v~~~~~~~~ 156 (268)
-+||+.++...... ...-.+..-.+-+||+++.+|+.. +.+++++.-. +.....+.. ...-+-.+....++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 47888876653321 122234444577899999998742 4478887532 011111111 11223445556788
Q ss_pred CCcEEEEeeCCCeEEEEeCCCC--ceEE--eecC------CCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372 157 DQTILSSCTDSGGVRLWDARSG--KIVQ--TLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~--~~~~--~~~~------~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~ 224 (268)
+..++++|...-+..+|..+.. .... .+.. ..--.-+.+.|+|++++.+.. .-.|||....+.++.+
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTL 205 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeC
Confidence 8877777776556777765321 1111 1111 111235778899999887765 3556688777665555
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.45 E-value=8.4 Score=31.33 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=81.8
Q ss_pred cEEEEEecCCCcEEEEee---CCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEE-CCCCCCCC
Q 024372 63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP 138 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d-~~~~~~~~ 138 (268)
.+.+.++++++..+|... ....++++... ...........+..-+|++++.+.+....+...+++- ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 677888999998766544 33445555543 3222222333556667899987777666666666663 22332222
Q ss_pred eEecCC--cccEEEEEEeCCCCcEEEEee--CCCeEEEEeCC---CC--c----eEEee-cCCCCEEEEEECCCCcEEEE
Q 024372 139 REVGNS--SGSIRTVAWLHSDQTILSSCT--DSGGVRLWDAR---SG--K----IVQTL-ETKSPVTSAEVSRDGRYITT 204 (268)
Q Consensus 139 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~--~d~~i~iwd~~---~~--~----~~~~~-~~~~~v~~~~~s~~g~~l~~ 204 (268)
...... .+.|..+.++|++..+++... +++.|.+=-+. .+ . .+... .....+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 222221 127999999999987655542 23566665442 22 1 11111 11346889999999998765
Q ss_pred e
Q 024372 205 A 205 (268)
Q Consensus 205 ~ 205 (268)
.
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 4
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.43 E-value=7.9 Score=34.63 Aligned_cols=141 Identities=14% Similarity=0.131 Sum_probs=83.5
Q ss_pred CCCcE-EEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCC--------CEEEEeeCCCeEEEEECCCCCCCCeEe
Q 024372 71 ANALF-SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT--------HLLLTGGFEKILRIFDLNRPDAPPREV 141 (268)
Q Consensus 71 ~~~~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~--------~~l~s~~~d~~i~~~d~~~~~~~~~~~ 141 (268)
.++.+ +..|+.-..++--|++.++.+..+.....+ .|.|.|.. +.|+ |-.+..|.--|.+.....+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 34444 456777778888899999999988866666 67777743 4444 4444445445765433221111
Q ss_pred cCCcccE-----EEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC
Q 024372 142 GNSSGSI-----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (268)
Q Consensus 142 ~~~~~~v-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~ 215 (268)
...... .+..- -..++++ .++..|-||+||-=.-+....++. ...+..+..+.+|+++.+.=...+.+-|+
T Consensus 555 -esKdY~tKn~Fss~~t-TesGyIa-~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 555 -ESKDYKTKNKFSSGMT-TESGYIA-AASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred -eehhcccccccccccc-ccCceEE-EecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence 111122 22221 2334444 445669999999432222223333 34588899999999987765568888887
Q ss_pred C
Q 024372 216 N 216 (268)
Q Consensus 216 ~ 216 (268)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 429
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.04 E-value=10 Score=31.73 Aligned_cols=231 Identities=13% Similarity=0.002 Sum_probs=109.3
Q ss_pred cCCCCCcEEEEEeCCCCeEEeeCCC--CCeEEEeeCccCcEEEEEecCCCcEEEEee-CCCcEEEEeCCCCCe-------
Q 024372 26 PITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDALTGDE------- 95 (268)
Q Consensus 26 ~~~~dg~~l~s~s~d~~i~iw~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~~------- 95 (268)
|..-++++|+.|+.+|--.+. ... ++..+-+ +..+|..+.+.+....|++-+ ....++++++..-..
T Consensus 8 ~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~ 84 (302)
T smart00036 8 PITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGS 84 (302)
T ss_pred ccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCC
Confidence 444444689999999987665 333 4444443 456898998887766665543 444599999833221
Q ss_pred ---------eeeeccCCeEE--EEEECCCCCEEEEeeCCCeEEEEECCCCCCC---CeE----ecCCcccEEEEEEeCC-
Q 024372 96 ---------KHSFEHKHIVR--ACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PRE----VGNSSGSIRTVAWLHS- 156 (268)
Q Consensus 96 ---------~~~~~~~~~v~--~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~----~~~~~~~v~~~~~~~~- 156 (268)
...+.+..... ++.-.+. ..++.+.....|.++....+... ... ......++..+..++.
T Consensus 85 ~~~~~~~~~~~~~~~tkGc~~~~v~~~~~-~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T smart00036 85 ARLVIRKNVLTKIPDTKGCHLCAVVNGKR-SLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF 163 (302)
T ss_pred ccccccccceEeCCcCCceEEEEEEcCCC-cEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence 11222322122 2222222 23444555667777654332111 111 0011112222222222
Q ss_pred -CCcEEEEeeCCCeEEEEeCCC--Cce----EEe-ecCCC-CEEEEEECCCCcEEEEeCCCeEEEEeCCCcee--eeEEe
Q 024372 157 -DQTILSSCTDSGGVRLWDARS--GKI----VQT-LETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGL--VKGYN 225 (268)
Q Consensus 157 -~~~~~~~~~~d~~i~iwd~~~--~~~----~~~-~~~~~-~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~--~~~~~ 225 (268)
...+++++.. +...+.++.. ... +.. ..... ...++..-+++.++.+=++ ...+-|....+. ...+.
T Consensus 164 ~~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 164 ERPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILH 241 (302)
T ss_pred cceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEE
Confidence 2345555443 2333444422 110 000 00111 3344444555666666554 333444432111 12233
Q ss_pred CCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEeec
Q 024372 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
....+.+++... .++++-.. ..|.++++.+|+.+.+.
T Consensus 242 w~~~p~~~~~~~---pyll~~~~-~~ievr~l~~~~l~q~i 278 (302)
T smart00036 242 WEFMPESFAYHS---PYLLAFHD-NGIEIRSIKTGELLQEL 278 (302)
T ss_pred cCCcccEEEEEC---CEEEEEcC-CcEEEEECCCCceEEEE
Confidence 334445555543 34555544 44999999999987764
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.50 E-value=2.3 Score=24.08 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=25.3
Q ss_pred CcEEEEEecCCC---cEEEEeeCCCcEEEEeCCC
Q 024372 62 GAVWSCCLDANA---LFSASGSADFTAKLWDALT 92 (268)
Q Consensus 62 ~~V~~~~~~~~~---~~l~s~s~D~~v~iw~~~~ 92 (268)
+.|+++.|+|.. ++|+-.-.-+.|-++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999754 4888887888999999975
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.26 E-value=21 Score=34.17 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=42.5
Q ss_pred cEEEEeeCCCeEEEEeCCCCceEEeecCCCCEE-------------EEEECC---CCcEEEEeC----------CCeEEE
Q 024372 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVT-------------SAEVSR---DGRYITTAD----------GSSVKF 212 (268)
Q Consensus 159 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~s~---~g~~l~~~~----------~~~v~~ 212 (268)
.++ .++.|+.|.-.|.++|+.+..+.....+. .+.-+| ++..++++. ++.|+-
T Consensus 262 rV~-~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RII-LPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEE-EecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 344 44567999999999999887665432221 111122 445555432 467999
Q ss_pred EeCCCceeeeEEeC
Q 024372 213 WDANHFGLVKGYNM 226 (268)
Q Consensus 213 wd~~~~~~~~~~~~ 226 (268)
+|.++++++-.+..
T Consensus 341 ~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 341 FDVNTGALVWAWDP 354 (764)
T ss_pred EECCCCcEeeEEec
Confidence 99999988876653
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.94 E-value=9 Score=35.95 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=66.3
Q ss_pred CCcEEEEeeCCCcEEEEeCCC-------C----C---------eeeeeccCCeEEEEEEC--CCCCEEEEeeCCCeEEEE
Q 024372 72 NALFSASGSADFTAKLWDALT-------G----D---------EKHSFEHKHIVRACAFS--EDTHLLLTGGFEKILRIF 129 (268)
Q Consensus 72 ~~~~l~s~s~D~~v~iw~~~~-------~----~---------~~~~~~~~~~v~~v~~~--~~~~~l~s~~~d~~i~~~ 129 (268)
+...|+.+..||.|.+|.+++ . . +...+..+..+..++++ ...+++|.++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 346788899999999997621 1 0 11222345567888888 788899999999999988
Q ss_pred ECCCC--CCCCeEecCCcccEEEEEEeCCC----Cc-EEEEeeCCCeEEEEeC
Q 024372 130 DLNRP--DAPPREVGNSSGSIRTVAWLHSD----QT-ILSSCTDSGGVRLWDA 175 (268)
Q Consensus 130 d~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~-~~~~~~~d~~i~iwd~ 175 (268)
-.... +........+..-|.+|+|.+.. ++ .+++++=.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65431 11111111233457888887654 22 4555555688888776
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.94 E-value=8.8 Score=30.21 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCEEEEeeCC--CeEEEEECCCCCCCCeEecCC----cccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCC
Q 024372 114 THLLLTGGFE--KILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187 (268)
Q Consensus 114 ~~~l~s~~~d--~~i~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 187 (268)
+.++.+.+.- ..|+.||+++++......... ...++.+ .+.....+ -.+|.-..+|.++.+++..+...
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~----gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL----GDYFYQLT-WKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec----cceEEEEE-eccceeEEEChHHhhhhcccccC
Confidence 4555555432 458889987654322211110 0111111 11222333 45688889999999998887655
Q ss_pred CCEEEEEECCCCcEEEEeC-CCeEEEEeCCCceeeeEEeCCCC------ceeeEEcCCCCCEEEeccCCCeEEEEECCCC
Q 024372 188 SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN------TESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (268)
Q Consensus 188 ~~v~~~~~s~~g~~l~~~~-~~~v~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g 260 (268)
+.--. +..|++-++.++ ..++++=|.+++....+....-. ...+-+. +|..++-.=.+..|-..|..+|
T Consensus 131 GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 131 GEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred Cccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCC
Confidence 44322 345555555544 45777777777665554432111 1111111 3555544433334555566666
Q ss_pred cEEee
Q 024372 261 EQIAI 265 (268)
Q Consensus 261 ~~~~~ 265 (268)
+.++.
T Consensus 207 rV~~w 211 (262)
T COG3823 207 RVVAW 211 (262)
T ss_pred cEEEE
Confidence 66543
No 434
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.47 E-value=8 Score=31.28 Aligned_cols=112 Identities=17% Similarity=0.318 Sum_probs=61.1
Q ss_pred EEeCCCCcEEEEeeCC--CeEEEEeCCC----CceEE---eecCCCCEEEEEECCCCcEEEEe-C-CCeEEEEeCCCc--
Q 024372 152 AWLHSDQTILSSCTDS--GGVRLWDARS----GKIVQ---TLETKSPVTSAEVSRDGRYITTA-D-GSSVKFWDANHF-- 218 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~d--~~i~iwd~~~----~~~~~---~~~~~~~v~~~~~s~~g~~l~~~-~-~~~v~~wd~~~~-- 218 (268)
.+.+++..+.++|..+ +.+|+++... ..-.. .+.....-.++..-|||+.++.| . .....+|+-+..
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 3456665444444333 3588888754 11111 12222334566778999987755 3 345677775321
Q ss_pred eeeeE-E------eCCCCceeeEEcCCCCCEEEeccCCCeEEEEECCCCcEEee
Q 024372 219 GLVKG-Y------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 219 ~~~~~-~------~~~~~~~~~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
..... + ..+.+.....+..++|++|+.+..+.. +||.++++.+..
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~ 204 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRT 204 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEee
Confidence 11111 1 112233444555558999999988754 568877766544
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.40 E-value=16 Score=31.67 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=100.8
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEe--cCCCcEEEEee---CC-------------------CcE
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL--DANALFSASGS---AD-------------------FTA 85 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~s---~D-------------------~~v 85 (268)
+.+.++=....++++-.|+.+.+...-+.-.++.+-...+ ..++..++-.- .| ..|
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 3344443444556666677777643333334444433333 33444443221 11 112
Q ss_pred EEEeCCCCCeeeeeccCCeEEEEEECCC-CCEEEEe---eCCCe-EEEEECCCCCCCCeEecC--CcccEEEEEEeCCCC
Q 024372 86 KLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTG---GFEKI-LRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSDQ 158 (268)
Q Consensus 86 ~iw~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~s~---~~d~~-i~~~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 158 (268)
.--|+.+++....+....-+..+.|+|. ..+++-| -++.. -|||-++........... ....+..=-|.+++.
T Consensus 171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 2235556665555556667888999994 4444443 35553 478866543222222211 112233334567776
Q ss_pred cEEEEee-C---CCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEE-eCCC----------------eEEEEeCCC
Q 024372 159 TILSSCT-D---SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGS----------------SVKFWDANH 217 (268)
Q Consensus 159 ~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~----------------~v~~wd~~~ 217 (268)
.+..-+. . +..|.-.|+.+++....... ....-...++||+++++ +.|. .|++++++.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 6543221 2 23566678888765443333 24556677899999875 2221 466788876
Q ss_pred ceeeeEEeCC-----------CCceeeEEcCCCCCEEE-eccCCCeEEEEECC
Q 024372 218 FGLVKGYNMP-----------CNTESASLEPKLGNIFI-AGGEDMWVHVFDFH 258 (268)
Q Consensus 218 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~gs~d~~i~~wd~~ 258 (268)
........+. ....-..|+| +|++++ ++...|...||=++
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 5433222111 1122356777 577666 45557776666543
No 436
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.23 E-value=1.2 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCEEEeccCCCeEEEEECCCCcEEee
Q 024372 240 GNIFIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 240 ~~~~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
+..+++++.++.++.+|.++|+++-.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34678888999999999999998643
No 437
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.71 E-value=17 Score=31.27 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCceEEeecCCC--CEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCC-ceee
Q 024372 157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESA 233 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~-~~~~ 233 (268)
++.++++ +.++.+...|.++|+.+....... .+....+-.++..+..++++.+...|..++...-.+..... ....
T Consensus 111 ~G~i~~g-~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGKIYVG-SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCeEEEe-cccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 3445544 455788889999999888776555 23344445566665555667777777777666555444321 0000
Q ss_pred --EEcCCCCCEEEeccC--CCeEEEEECCCCcEEe
Q 024372 234 --SLEPKLGNIFIAGGE--DMWVHVFDFHTGEQIA 264 (268)
Q Consensus 234 --~~~~~~~~~~~~gs~--d~~i~~wd~~~g~~~~ 264 (268)
.... ....++.+.. ++.++-.|+.+|+.+-
T Consensus 190 ~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 190 YGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence 0011 2334444444 5567777777777653
No 438
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.67 E-value=14 Score=30.10 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=82.5
Q ss_pred CeeeEEEecCCCCCcEEEEEe-CCCCeEEeeCCCCCeEEE-eeCccCcEEEEEecCCCcEEEEeeCCCcEEEEe-CCCCC
Q 024372 18 PVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWD-ALTGD 94 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s-~d~~i~iw~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~-~~~~~ 94 (268)
.+.+.+.+ +||+.+|... .++.-.+|-...+..... +.+. .+..-+|++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS---~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVS---PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEEC---CCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 56677776 4888777666 233334443333332222 2332 566678899977666656666667764 33332
Q ss_pred ee-eeec--cC-CeEEEEEECCCCCEEEEee---CCCeEEEEECCC-CCC-CC-----eEe-cCCcccEEEEEEeCCCCc
Q 024372 95 EK-HSFE--HK-HIVRACAFSEDTHLLLTGG---FEKILRIFDLNR-PDA-PP-----REV-GNSSGSIRTVAWLHSDQT 159 (268)
Q Consensus 95 ~~-~~~~--~~-~~v~~v~~~~~~~~l~s~~---~d~~i~~~d~~~-~~~-~~-----~~~-~~~~~~v~~~~~~~~~~~ 159 (268)
.. .... .. ..|..+.++|||..++... .++.+.+--+.. ... .. ... ......+..+.|.+++..
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 21 1222 11 2799999999999887655 345555543321 111 10 111 122356789999988766
Q ss_pred EEEEeeCCCeEEE
Q 024372 160 ILSSCTDSGGVRL 172 (268)
Q Consensus 160 ~~~~~~~d~~i~i 172 (268)
++++...+..+..
T Consensus 180 ~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGRSAGGPVVR 192 (253)
T ss_pred EEEeCCCCCceeE
Confidence 5555554443333
No 439
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.22 E-value=20 Score=31.58 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCcEEEEEe-CCCCeEEeeCCC----CCeEEEeeC---cc----CcEEEEEecCCCcEEEEe--eCC----CcEEEEeCC
Q 024372 30 DGFFLVSAS-KDSSPMLRNGET----GDWIGTFEG---HK----GAVWSCCLDANALFSASG--SAD----FTAKLWDAL 91 (268)
Q Consensus 30 dg~~l~s~s-~d~~i~iw~~~~----~~~~~~~~~---h~----~~V~~~~~~~~~~~l~s~--s~D----~~v~iw~~~ 91 (268)
+.++|+..+ .+..|.|.|+.+ .++.+.++. ++ ..-.++..-|+|.+++|+ ..+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566676666 666788888874 345555543 21 112233335778777664 333 346677777
Q ss_pred CCCeeeeeccC----CeEEEEEECCCCCEEEEee--------------------CCCeEEEEECCCCCCCCeEecCCcc-
Q 024372 92 TGDEKHSFEHK----HIVRACAFSEDTHLLLTGG--------------------FEKILRIFDLNRPDAPPREVGNSSG- 146 (268)
Q Consensus 92 ~~~~~~~~~~~----~~v~~v~~~~~~~~l~s~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~~- 146 (268)
+.+.+..++.. ..-....+.|..++++|.. +.+.+.+||+.+.+..........+
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77776666532 2344566777777777753 3467999999865433222222222
Q ss_pred cEEEEEEeCC--CCcEEEEeeCCCeEEEE-eCCCCc----eEEeecC------------------CCCEEEEEECCCCcE
Q 024372 147 SIRTVAWLHS--DQTILSSCTDSGGVRLW-DARSGK----IVQTLET------------------KSPVTSAEVSRDGRY 201 (268)
Q Consensus 147 ~v~~~~~~~~--~~~~~~~~~~d~~i~iw-d~~~~~----~~~~~~~------------------~~~v~~~~~s~~g~~ 201 (268)
....+.|.++ ..+-++++.-...|..| -.+.++ .+-++.. ..-+..|.+|.|.+|
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777643 33334444433445444 323332 1222211 112678999999999
Q ss_pred EEEe--CCCeEEEEeCCC
Q 024372 202 ITTA--DGSSVKFWDANH 217 (268)
Q Consensus 202 l~~~--~~~~v~~wd~~~ 217 (268)
|-.+ -.+.||-||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 8665 378999999965
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.93 E-value=4.3 Score=37.06 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=21.8
Q ss_pred CCcEEEEeeCCCeEEEEeCCCCceEEee
Q 024372 157 DQTILSSCTDSGGVRLWDARSGKIVQTL 184 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 184 (268)
+..++.+-+.|++||+||+.+++++.+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3445556667899999999999997665
No 441
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.59 E-value=3.7 Score=22.47 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=25.8
Q ss_pred CCCcEEEEe--CCCeEEEEeCCCceeeeEEeCCCCceeeE
Q 024372 197 RDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESAS 234 (268)
Q Consensus 197 ~~g~~l~~~--~~~~v~~wd~~~~~~~~~~~~~~~~~~~~ 234 (268)
|+++++..+ .++.|.++|..+...+..+.....+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 567765443 46799999998888777776654444443
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.46 E-value=22 Score=31.17 Aligned_cols=144 Identities=11% Similarity=0.024 Sum_probs=79.3
Q ss_pred EEEEecCCCcEEEEeeCCCcEEEEeCCCCC-eeeeeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCC----CCe
Q 024372 65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPR 139 (268)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~----~~~ 139 (268)
..+...+++.+++.+..-...+-||-.... ..........+..+.+.+++.+++++ .+|.+.. ....+.. ...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccccee
Confidence 334456677666655544334445532211 22233344567888899999887765 4555433 2222211 111
Q ss_pred EecC--CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec----CCCCEEEEEECCCCcEEEEeCCCeEEEE
Q 024372 140 EVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFW 213 (268)
Q Consensus 140 ~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~v~~w 213 (268)
.... ....+..+.+.++ +.++++|.. |.+... ...|+.-+..+ .....+.+.|.++++-++.++++.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d-~~~~a~G~~-G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSK-KEAWAAGGS-GILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCC-CcEEEEECC-CcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1111 1124677777654 456666544 666554 45565544433 1345789999888888888888776543
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.66 E-value=21 Score=30.30 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=54.0
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCe---EEEe----eCccCcEEEEEecCC----CcEEEEeeC------
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTF----EGHKGAVWSCCLDAN----ALFSASGSA------ 81 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~---~~~~----~~h~~~V~~~~~~~~----~~~l~s~s~------ 81 (268)
-++++|.| ||.+++ +...|.|++.+ ..+.. +..+ .........++++|+ +.+.++-+.
T Consensus 4 P~~~a~~p---dG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 4 PRSMAFLP---DGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp EEEEEEET---TSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred ceEEEEeC---CCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 46899985 887766 56799999988 44443 3333 223456889999984 443333331
Q ss_pred CC--cEEEEeCCCC--Ce-----e-eeec----cCCeEEEEEECCCCCEEEEeeCC
Q 024372 82 DF--TAKLWDALTG--DE-----K-HSFE----HKHIVRACAFSEDTHLLLTGGFE 123 (268)
Q Consensus 82 D~--~v~iw~~~~~--~~-----~-~~~~----~~~~v~~v~~~~~~~~l~s~~~d 123 (268)
+. .|.-|..... .. + .... ..+.-..+.|.|++.+.++.+..
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 12 3333444333 10 1 1111 23456779999999777765443
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.05 E-value=7.3 Score=34.32 Aligned_cols=164 Identities=11% Similarity=0.063 Sum_probs=86.2
Q ss_pred eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe-eeee-c--cC---CeEE-EEEECCCCCEEEEeeCCC
Q 024372 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE-KHSF-E--HK---HIVR-ACAFSEDTHLLLTGGFEK 124 (268)
Q Consensus 53 ~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~-~~~~-~--~~---~~v~-~v~~~~~~~~l~s~~~d~ 124 (268)
.+..+..-...|..+-..||++.+..-+. .++.++++..... .+.+ + .. +.|+ .+..-..+..+..++.||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 34445555566777778999987754433 5677777654331 1111 1 11 1121 111112345566777787
Q ss_pred eEEEE-ECCCCCCCC-eEe---cCCcccEEEEEEeCCC-CcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCC
Q 024372 125 ILRIF-DLNRPDAPP-REV---GNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRD 198 (268)
Q Consensus 125 ~i~~~-d~~~~~~~~-~~~---~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~ 198 (268)
.+.-| |.+...... ... .-...++..+ .|+. ..-+++-...|++..+..-..+.+-.-..-....-+++||+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPN 368 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcc
Confidence 77655 765433211 110 0011122211 1222 23344555667777765544333221111124567899999
Q ss_pred CcEEEEeCCCeEEEEeCCCce
Q 024372 199 GRYITTADGSSVKFWDANHFG 219 (268)
Q Consensus 199 g~~l~~~~~~~v~~wd~~~~~ 219 (268)
+.++.+-+.+.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999988999999887653
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.87 E-value=25 Score=30.36 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=67.6
Q ss_pred EEEEEECCCCCEEEEee-----------CCC-eEEEEECCCC--CCC-CeEecCCcccEEEEEEeCCCCcEEEEeeCCCe
Q 024372 105 VRACAFSEDTHLLLTGG-----------FEK-ILRIFDLNRP--DAP-PREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (268)
Q Consensus 105 v~~v~~~~~~~~l~s~~-----------~d~-~i~~~d~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 169 (268)
...++|.++|+++++-. ..+ .|.+++-..+ ... ...+-..-.....+++.+++ ++++. ....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CCeE
Confidence 34577888888766532 112 5555543221 111 11221112234567766655 55554 3233
Q ss_pred EEEEeCCC-------CceE-EeecC-----CCCEEEEEECCCCcEEEE-eCC-------------------CeEEEEeCC
Q 024372 170 VRLWDARS-------GKIV-QTLET-----KSPVTSAEVSRDGRYITT-ADG-------------------SSVKFWDAN 216 (268)
Q Consensus 170 i~iwd~~~-------~~~~-~~~~~-----~~~v~~~~~s~~g~~l~~-~~~-------------------~~v~~wd~~ 216 (268)
.++.|... .+.+ ..+.. +...+.+.+.|||++.++ ++. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 34445531 1122 22322 344788999999987654 311 223333443
Q ss_pred CceeeeEEeC-CCCceeeEEcCCCCCEEEeccC
Q 024372 217 HFGLVKGYNM-PCNTESASLEPKLGNIFIAGGE 248 (268)
Q Consensus 217 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gs~ 248 (268)
..+ +..+.. ..+...+++.+ .|+++++-..
T Consensus 173 g~~-~e~~a~G~rnp~Gl~~d~-~G~l~~tdn~ 203 (367)
T TIGR02604 173 GGK-LRVVAHGFQNPYGHSVDS-WGDVFFCDND 203 (367)
T ss_pred CCe-EEEEecCcCCCccceECC-CCCEEEEccC
Confidence 322 233332 23455677776 6888877443
No 446
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.85 E-value=19 Score=31.64 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCeeeEEEecC--------CCCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEe
Q 024372 17 RPVVDLFYSPI--------TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL 69 (268)
Q Consensus 17 ~~v~~~~f~~~--------~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~ 69 (268)
+.|+++.+-|+ .+|...++.|..+|-+++|.. +|.++..=.-|.++|..+..
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence 57888888776 267789999999999999975 67665433457778877765
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.76 E-value=11 Score=33.76 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCcEEEEEeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEE
Q 024372 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC 108 (268)
Q Consensus 29 ~dg~~l~s~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v 108 (268)
+.|..+|-++.+|-+.++-.+.-..-..++..+.-|.+-.++-+..++ +.+ ..-.+.-+
T Consensus 113 ~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss--------------------~~ltl~Qa 171 (741)
T KOG4460|consen 113 PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSS--------------------TSLTLKQA 171 (741)
T ss_pred CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccC--------------------Cceeeeec
Confidence 567777777888877665432211112233333334433333333332 221 11135567
Q ss_pred EECCCC---CEEEEeeCCCeEEEEECCCCC
Q 024372 109 AFSEDT---HLLLTGGFEKILRIFDLNRPD 135 (268)
Q Consensus 109 ~~~~~~---~~l~s~~~d~~i~~~d~~~~~ 135 (268)
+|+|+. ..|..-+.|++||+||+....
T Consensus 172 ~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 172 AWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred cccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 788864 566666789999999986543
No 448
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.43 E-value=36 Score=31.85 Aligned_cols=160 Identities=9% Similarity=0.082 Sum_probs=85.7
Q ss_pred cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe--eeeec--cC------CeEEEEEECCCCCEEEEeeC-C---CeE
Q 024372 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSFE--HK------HIVRACAFSEDTHLLLTGGF-E---KIL 126 (268)
Q Consensus 61 ~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~--~~~~~--~~------~~v~~v~~~~~~~~l~s~~~-d---~~i 126 (268)
.++|..+.+.+++..++..-..|.|.+||...+.. ..... ++ ..|...........+++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 57788899998898888888999999999932221 11111 11 12222211111233333332 2 346
Q ss_pred EEEECCCCCCCCeEec-----CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCC-------CEEEEE
Q 024372 127 RIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-------PVTSAE 194 (268)
Q Consensus 127 ~~~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~ 194 (268)
|++.+........+.. .....-..++|. .+.+.-- .+++|.+|++...+..+++.... .+.++.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 7777732222222221 111122234443 3433322 45899999999888777664321 222222
Q ss_pred ECCCCcEEEEeCCCeEEEEeCCCceeeeEEe
Q 024372 195 VSRDGRYITTADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 195 ~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~~ 225 (268)
.|.-+.+.-+.+..|.+.|+....++..+.
T Consensus 285 -~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 -PPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -cCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 233334444555699999997766665555
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.33 E-value=13 Score=26.89 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=60.7
Q ss_pred EEECCCCCEEEEeeCCCeEEEEECCCCCC-------CCeEecCCcccEEEEEEeC----CCCcEEEEeeCCCeEEEEeCC
Q 024372 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSGSIRTVAWLH----SDQTILSSCTDSGGVRLWDAR 176 (268)
Q Consensus 108 v~~~~~~~~l~s~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~d~~i~iwd~~ 176 (268)
-.|......|+.++.-+.|.+.+...... ..+.+ +-...|++++--+ ++.-+|..|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 34555566788888888888887653211 11222 3344677765322 22335556665 789999998
Q ss_pred CCceEEeecCCCCEEEEEECC----CCcEEEEeCCCeEEEEeCC
Q 024372 177 SGKIVQTLETKSPVTSAEVSR----DGRYITTADGSSVKFWDAN 216 (268)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~~~v~~wd~~ 216 (268)
....+..-+....++++.+-. +..+++.+.+-.|.=||.+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 766554334445677776632 2334455554455555543
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.12 E-value=9.2 Score=37.53 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=78.4
Q ss_pred EEEEEeCCCCeEEeeCCCCCe-----EEEeeCcc----C--cEEEEEecCCCc-EEEEeeCCCcEEEEeCCCC-Ceeeee
Q 024372 33 FLVSASKDSSPMLRNGETGDW-----IGTFEGHK----G--AVWSCCLDANAL-FSASGSADFTAKLWDALTG-DEKHSF 99 (268)
Q Consensus 33 ~l~s~s~d~~i~iw~~~~~~~-----~~~~~~h~----~--~V~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~-~~~~~~ 99 (268)
.++..+++-.|..+|+++-.. ..-|..|. . .+.++.|.|.-. ..|.+..|+.|++..+... +....+
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 344445544666788765321 22222222 2 233445555432 2356678888888776432 233445
Q ss_pred ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC-CeEec-CCcccEEEEEEeCCCCcEEEEe
Q 024372 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVG-NSSGSIRTVAWLHSDQTILSSC 164 (268)
Q Consensus 100 ~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 164 (268)
.....+++++|+|.|+.++.|-..|++.-|-..-+... +.... .....|.+|+|.....++++.+
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 66677899999999999999999999988865322110 00100 1246789999987766655543
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.79 E-value=20 Score=28.36 Aligned_cols=106 Identities=10% Similarity=0.188 Sum_probs=58.1
Q ss_pred ECCCCCEEEEeeCCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCC-----CeEEEE---eCCC--Cc
Q 024372 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLW---DARS--GK 179 (268)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----~~i~iw---d~~~--~~ 179 (268)
.++.+.++++ .....|.+|++..........-...+.|..+.++..|.++++-=.+. ..+|+| .... .+
T Consensus 25 ~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 25 CGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3443344443 45577999999844433332223457899999998887655432211 256664 3221 11
Q ss_pred eEE-----------------------eecCCCCEEEEEECCC-CcEEEEeCCCeEEEEeCCC
Q 024372 180 IVQ-----------------------TLETKSPVTSAEVSRD-GRYITTADGSSVKFWDANH 217 (268)
Q Consensus 180 ~~~-----------------------~~~~~~~v~~~~~s~~-g~~l~~~~~~~v~~wd~~~ 217 (268)
.+. .++...++.+++..|- |+++++.. +.+.+|.+..
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY 164 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence 111 1112234667777774 66665554 5888888743
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.48 E-value=22 Score=33.45 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=60.6
Q ss_pred CCcEEEEeeCCCeEEEEeCCC-------C----c---------eEEeecCCCCEEEEEEC--CCCcEEEEeCC-CeEEEE
Q 024372 157 DQTILSSCTDSGGVRLWDARS-------G----K---------IVQTLETKSPVTSAEVS--RDGRYITTADG-SSVKFW 213 (268)
Q Consensus 157 ~~~~~~~~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--~~g~~l~~~~~-~~v~~w 213 (268)
+..+|+.|.|||.|.+|-+++ . + +.-.+.....+-+++++ ...++++.|++ ..|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 345777888999999996531 0 0 11112233457788988 77888887754 566665
Q ss_pred --eCCC--ceeeeEEeCCCCceeeEEcCCC----CC-EEEeccCCCeEEEEEC
Q 024372 214 --DANH--FGLVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF 257 (268)
Q Consensus 214 --d~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~gs~d~~i~~wd~ 257 (268)
.+.. ....+......++-.++|.+.. |. .+++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4421 1112233344555566665432 33 6677788888888877
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=82.85 E-value=29 Score=29.57 Aligned_cols=147 Identities=11% Similarity=0.047 Sum_probs=81.5
Q ss_pred cCcEEEEEecCCCcEEEEeeCCCcEE-EEeCCCCCeeeee--ccCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCC
Q 024372 61 KGAVWSCCLDANALFSASGSADFTAK-LWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (268)
Q Consensus 61 ~~~V~~~~~~~~~~~l~s~s~D~~v~-iw~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~ 137 (268)
.+.+..+.+.+++.+++.+. .|.+. .++-. +..-... .....+..+.+.++++.++.+ ..+.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 35678888889887766554 44443 22221 1111111 233467888899998877665 457665322222211
Q ss_pred CeEecC----CcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC----CCCEEEEEECCCCcEEEEeCCCe
Q 024372 138 PREVGN----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTADGSS 209 (268)
Q Consensus 138 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~~~~s~~g~~l~~~~~~~ 209 (268)
.+.... ....+..+.+.+++ .+++++. +|.+. .....++.-+.... ....+.+.+..+++.++.++.+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence 111111 11245677777754 4555554 46554 44555555444321 23477888888888888888887
Q ss_pred EEEEe
Q 024372 210 VKFWD 214 (268)
Q Consensus 210 v~~wd 214 (268)
|--|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 77665
No 454
>PRK10115 protease 2; Provisional
Probab=82.47 E-value=45 Score=31.59 Aligned_cols=111 Identities=9% Similarity=0.097 Sum_probs=60.0
Q ss_pred cEEEEEecCCCcEEEEee-C----CCcEEEEeCCCCCeeee-eccCCeEEEEEECCCCCEEEEeeCC------CeEEEEE
Q 024372 63 AVWSCCLDANALFSASGS-A----DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFD 130 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s-~----D~~v~iw~~~~~~~~~~-~~~~~~v~~v~~~~~~~~l~s~~~d------~~i~~~d 130 (268)
.+..+.++|++++++-+. . .-.+++-|+.++..+.. +.... ..++|.+|++.|+-...+ ..+..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 355677899999876432 2 23578888887753222 11111 458899988766655432 3566677
Q ss_pred CCCCCCCCe-EecCCcccEEEEEEeC-CCCcEEEEeeC--CCeEEEEeC
Q 024372 131 LNRPDAPPR-EVGNSSGSIRTVAWLH-SDQTILSSCTD--SGGVRLWDA 175 (268)
Q Consensus 131 ~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~~~~~~~~--d~~i~iwd~ 175 (268)
+.++...-. ..........-..+.+ ++..+++.+.. ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 766521111 1212222222222333 55555544332 257888885
No 455
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.33 E-value=3.1 Score=22.65 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEeccCCCeEEEEECCCCcEEee
Q 024372 243 FIAGGEDMWVHVFDFHTGEQIAI 265 (268)
Q Consensus 243 ~~~gs~d~~i~~wd~~~g~~~~~ 265 (268)
++.++.|+.|+-.|.++|+.+=.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEe
Confidence 44558899999999999998643
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.16 E-value=32 Score=28.94 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=36.9
Q ss_pred CeEEEEeCCCCceE--EeecCCCCEEEEEECCCCcE-EEEeCCC----eEEEEeCCCcee--eeEEe---CCCCc-eeeE
Q 024372 168 GGVRLWDARSGKIV--QTLETKSPVTSAEVSRDGRY-ITTADGS----SVKFWDANHFGL--VKGYN---MPCNT-ESAS 234 (268)
Q Consensus 168 ~~i~iwd~~~~~~~--~~~~~~~~v~~~~~s~~g~~-l~~~~~~----~v~~wd~~~~~~--~~~~~---~~~~~-~~~~ 234 (268)
+.+..||+++.+=. ..+.........+..-++++ ++++.++ .+..||.++..- +.... .+... ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 46888898876422 12221122222233334544 4444332 356788765432 22111 11100 1111
Q ss_pred EcCCCCCEEEeccCC
Q 024372 235 LEPKLGNIFIAGGED 249 (268)
Q Consensus 235 ~~~~~~~~~~~gs~d 249 (268)
....++++++.||.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 222247888898876
No 457
>PRK13684 Ycf48-like protein; Provisional
Probab=80.58 E-value=35 Score=29.05 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=76.0
Q ss_pred CeEEEEEECCCCCEEEEeeCCCeEE-EEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceE
Q 024372 103 HIVRACAFSEDTHLLLTGGFEKILR-IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181 (268)
Q Consensus 103 ~~v~~v~~~~~~~~l~s~~~d~~i~-~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 181 (268)
..+..+.+.+++..++++. .|.+. .+|-. ++.-..........+..+.+.+++.. ++.+. .|.+++=....|+.-
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNL-WMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCE-EEEec-CCEEEEccCCCCCcc
Confidence 4577888999887666554 45443 22211 11111112223446777887776654 44443 366643234444443
Q ss_pred EeecC-----CCCEEEEEECCCCcEEEEeCCCeEEE-EeC-CCceeeeE-EeCCCCceeeEEcCCCCCEEEeccCCCeEE
Q 024372 182 QTLET-----KSPVTSAEVSRDGRYITTADGSSVKF-WDA-NHFGLVKG-YNMPCNTESASLEPKLGNIFIAGGEDMWVH 253 (268)
Q Consensus 182 ~~~~~-----~~~v~~~~~s~~g~~l~~~~~~~v~~-wd~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gs~d~~i~ 253 (268)
+.... ...+..+.+.|++.+++.+.++.+.. -|- +++..++. -..+.....+.+.. +++. .+.+..|.|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~il 326 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVLL 326 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceEE
Confidence 32221 12367888999998888887765543 121 22332221 11222333444443 3444 5566667777
Q ss_pred EEE
Q 024372 254 VFD 256 (268)
Q Consensus 254 ~wd 256 (268)
.|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 775
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=79.92 E-value=42 Score=29.61 Aligned_cols=144 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCCEEEEeeCCCeEEEEECCCCCCC---CeEecCCcccEEEEEE----eCCCCcEEEEeeCCCeEEEEeC--------
Q 024372 111 SEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAW----LHSDQTILSSCTDSGGVRLWDA-------- 175 (268)
Q Consensus 111 ~~~~~~l~s~~~d~~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~d~~i~iwd~-------- 175 (268)
..+...++.|+..|.+++|+....... .-....-..+|..+.. +......++.-.. +.+.||.+
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP-~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHP-RKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecC-CEEEEEEEEecCCCcc
Q ss_pred ----CCCceEEeecCCCCEEEEEECCCC------cEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEe
Q 024372 176 ----RSGKIVQTLETKSPVTSAEVSRDG------RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (268)
Q Consensus 176 ----~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (268)
-.-+.+.....+....+++.-|=| .+.+=+-||.+.+++-+...-...+..--.+-.+++.+ .-+.|++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEE
Q ss_pred ccCCCeEEEEE
Q 024372 246 GGEDMWVHVFD 256 (268)
Q Consensus 246 gs~d~~i~~wd 256 (268)
++.+..+..|.
T Consensus 192 ~sss~~l~~Yk 202 (418)
T PF14727_consen 192 ASSSWTLECYK 202 (418)
T ss_pred ecCceeEEEec
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.55 E-value=61 Score=30.67 Aligned_cols=174 Identities=12% Similarity=0.135 Sum_probs=85.8
Q ss_pred CeeeEEEecCCCCCcEEEEEeCCCCeEEeeCCCCCeEEEe----eCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCC
Q 024372 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF----EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (268)
Q Consensus 18 ~v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~~~~~~~~~----~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 93 (268)
++..+.|+ +..-|++-..||++.+++.. |+.+... ......|..|.+..+|-.+.+.+. ..+.+.+....
T Consensus 85 ~lI~mgWs----~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g-~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWS----DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSG-QVILINGVEEP 158 (829)
T ss_pred Ceeeeccc----CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEecCC-cEEEEcCCCcc
Confidence 56688887 45678999999999999864 4444332 223345777777667755555532 23334444332
Q ss_pred Ceeeeec-cCCeE--EEEE-ECCC--CCEEEEee-CCCeEEEEECCCCCCCCeEecCCcccEEEEEEeCCCCcEEEEeeC
Q 024372 94 DEKHSFE-HKHIV--RACA-FSED--THLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (268)
Q Consensus 94 ~~~~~~~-~~~~v--~~v~-~~~~--~~~l~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 166 (268)
....... ..... .|-. +.|. ...++-.. ..+ ..++..++.......+......+..+..+|..+++..- +.
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLy-t~ 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALY-TE 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEE-ec
Confidence 2211111 00111 1111 1111 11111110 000 01122222222222222233567777888887776554 45
Q ss_pred CCeEEEEeCCCCceEEeec--CCCCEEEEEECCCC
Q 024372 167 SGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDG 199 (268)
Q Consensus 167 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~~g 199 (268)
.|.|.+-+....+++-.++ .+.+...++|..+.
T Consensus 237 ~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 237 TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 5888888877766665554 33334455555444
No 460
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.75 E-value=43 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=18.9
Q ss_pred eEEEEeCCCceeeeEEeCCCCceeeEEcCCCCCEEEeccCC
Q 024372 209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (268)
Q Consensus 209 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 249 (268)
.+.+||....+-...-..+..........-++++++.||.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 45677765432222122222211122222257788888765
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.70 E-value=43 Score=33.66 Aligned_cols=134 Identities=14% Similarity=0.214 Sum_probs=75.3
Q ss_pred eCCCeEEEEECCCCCCCCeEecCCcccEEEEEE--------eCCCCcEEEEeeCCCeEEEEeCC----CCceE-----Ee
Q 024372 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW--------LHSDQTILSSCTDSGGVRLWDAR----SGKIV-----QT 183 (268)
Q Consensus 121 ~~d~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~~~~d~~i~iwd~~----~~~~~-----~~ 183 (268)
+-|+.+.+|+.+++. ...........|..|.. .|.-+++++.++. -.|.|+-+. ++..- .+
T Consensus 96 TiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 457889999998732 33444443445555543 2333566665555 567776553 22211 11
Q ss_pred ecC-CCCEEEEEECCCCcEEEEeCCCeEEEEeC----CC-c--e-eee-------------EE-eCC----CCceeeEEc
Q 024372 184 LET-KSPVTSAEVSRDGRYITTADGSSVKFWDA----NH-F--G-LVK-------------GY-NMP----CNTESASLE 236 (268)
Q Consensus 184 ~~~-~~~v~~~~~s~~g~~l~~~~~~~v~~wd~----~~-~--~-~~~-------------~~-~~~----~~~~~~~~~ 236 (268)
+.. ...|+++....+|+.+.+|.|+ .+|.+ .. + + +-+ ++ +.+ .++..+.+.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 122 3458999999999999998877 45543 11 0 1 110 00 111 122233333
Q ss_pred CCCCCEEEeccCCCeEEEEECCC
Q 024372 237 PKLGNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 237 ~~~~~~~~~gs~d~~i~~wd~~~ 259 (268)
. +...+.+=++-+.|..||...
T Consensus 252 ~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 N-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-ccceeeeeccCceEEEEEccC
Confidence 3 456777889999999999864
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.35 E-value=42 Score=29.83 Aligned_cols=104 Identities=15% Similarity=0.021 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCeEEe-eCCCCC-----eEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCC
Q 024372 30 DGFFLVSASKDSSPMLR-NGETGD-----WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw-~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 103 (268)
.|.-|..++.||-+.-| |+..+. .++.++-..++|..+.-..+.+-+++-...|++.++.....+....-..-+
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 46678888999988655 766542 233333333444444333344556777788888887654444333222233
Q ss_pred eEEEEEECCCCCEEEEeeCCCeEEEEECCCC
Q 024372 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (268)
Q Consensus 104 ~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~ 134 (268)
....+.++|++..+++- ..+.|+++.++++
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCC
Confidence 55678899998888763 4577899987654
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.30 E-value=31 Score=26.12 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=25.5
Q ss_pred ccEEEEEEeCCC-----CcEEEEeeCCCeEEEEeCCC
Q 024372 146 GSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 146 ~~v~~~~~~~~~-----~~~~~~~~~d~~i~iwd~~~ 177 (268)
..+..++|+|.| ..+|+..+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368889999855 45788888889999998764
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.17 E-value=59 Score=29.27 Aligned_cols=154 Identities=20% Similarity=0.188 Sum_probs=70.4
Q ss_pred CCCcEEEEE---eCCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCe-
Q 024372 29 PDGFFLVSA---SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI- 104 (268)
Q Consensus 29 ~dg~~l~s~---s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~- 104 (268)
.+|-++++. .......+.|. .|..+-.+..-......+..-++|.++...+ ..++..|+. |+....+..+..
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 456666666 22333334442 3544433322111111144567887765443 778888875 444444433221
Q ss_pred ---EEEEEECCCCCEEEEee--------------CC---------CeEEEEECCCCCCCCeE-------------ecCCc
Q 024372 105 ---VRACAFSEDTHLLLTGG--------------FE---------KILRIFDLNRPDAPPRE-------------VGNSS 145 (268)
Q Consensus 105 ---v~~v~~~~~~~~l~s~~--------------~d---------~~i~~~d~~~~~~~~~~-------------~~~~~ 145 (268)
=..+..-|+|++|+.+. .| ..+..||+..--..... .....
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 12455677888777666 11 22334554311000010 00001
Q ss_pred --ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecC
Q 024372 146 --GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186 (268)
Q Consensus 146 --~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (268)
-.++++.+.+.+..+++++.....|...|.++++....+..
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 24788999997888888876656898999888888777653
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.57 E-value=52 Score=28.30 Aligned_cols=189 Identities=15% Similarity=0.076 Sum_probs=90.0
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCeE--EEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCC--eE
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH--IV 105 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~--~v 105 (268)
|| .+..++.|+.+.-.|..+++.+ ..+.+....+..-.+..+|. +..++.++.++..|..++..+...+... .+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 45 4555688888888888888743 11111011111111223666 5567788888888988888777665444 11
Q ss_pred EEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec-------CCcccEEEEEEeCCCCcEEEEeeC-CCeEEEEeCCC
Q 024372 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARS 177 (268)
Q Consensus 106 ~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~-d~~i~iwd~~~ 177 (268)
..-..-.++ .+..++.++.+.-.|..++........ ....+. ..++.+++.... ++.+.-.|.++
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~------~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA------IASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce------eecceEEEecCCCcceEEEEEccC
Confidence 111111123 223333455555555443332111110 011111 112233333221 34566667777
Q ss_pred CceEEeecCCCCEEE-----EEEC------CCCcEEEEeCCCeEEEEeCCCceeeeEEeCC
Q 024372 178 GKIVQTLETKSPVTS-----AEVS------RDGRYITTADGSSVKFWDANHFGLVKGYNMP 227 (268)
Q Consensus 178 ~~~~~~~~~~~~v~~-----~~~s------~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~ 227 (268)
|+.....+....+.. ...- -++.....+.++.+...|..+++.+-.+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 877655322111110 1111 1222233344556777788777777666653
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.48 E-value=63 Score=32.57 Aligned_cols=137 Identities=16% Similarity=0.225 Sum_probs=78.4
Q ss_pred EeCCCCeEEeeCCCCCeEEEeeCccCcEEEEEe-cC-------CCcEEEEeeCCCcEEEEeCC----CCCe-----eeee
Q 024372 37 ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DA-------NALFSASGSADFTAKLWDAL----TGDE-----KHSF 99 (268)
Q Consensus 37 ~s~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~-~~-------~~~~l~s~s~D~~v~iw~~~----~~~~-----~~~~ 99 (268)
.+.|..+.+|+.+++.-...+.+-+..|..|.. .| .=++++--+.-..|.++-+. ++.. ...+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 378999999999987666667766666766653 22 22333333333444444331 1111 1112
Q ss_pred c-cCCeEEEEEECCCCCEEEEeeCCCeEEEEEC----CCCC--------------------CCCeEecCCcccEEEEEEe
Q 024372 100 E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRPD--------------------APPREVGNSSGSIRTVAWL 154 (268)
Q Consensus 100 ~-~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~----~~~~--------------------~~~~~~~~~~~~v~~~~~~ 154 (268)
. .+-.|+++....+|+++++|-. +. +|.+ ..+- ...+..+.+..+|..+...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~d-g~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRD-GN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecC-CC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 2 2446888988889998887654 43 4442 1110 0011122456688888865
Q ss_pred CCCCcEEEEeeCCCeEEEEeCCC
Q 024372 155 HSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 155 ~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
.+ ..++.+-+..++|++||+..
T Consensus 252 ~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cc-cceeeeeccCceEEEEEccC
Confidence 44 44555556669999999975
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.18 E-value=57 Score=28.61 Aligned_cols=106 Identities=8% Similarity=-0.010 Sum_probs=56.1
Q ss_pred cCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCC-----eeeeecc---CCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----EKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 61 ~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~---~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
...+..+.+.+++.+++.+ .+|.+.. ....+. ....... ...+..+.|.+++..+++| ..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 4467888888888876655 4555433 222332 1122221 2347888888888766655 456655442 2
Q ss_pred CCCCCCeEe---cCCcccEEEEEEeCCCCcEEEEeeCCCeEEEE
Q 024372 133 RPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (268)
Q Consensus 133 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iw 173 (268)
.++. -+.. ..-....+.+.|.+++. .+++| ++|.|.-|
T Consensus 356 ~G~t-W~~~~~~~~~~~~ly~v~f~~~~~-g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKS-WKRDKGADNIAANLYSVKFFDDKK-GFVLG-NDGVLLRY 396 (398)
T ss_pred CCcc-eeEccccCCCCcceeEEEEcCCCc-eEEEe-CCcEEEEe
Confidence 2221 1111 12234567788766544 45454 44776544
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=74.48 E-value=56 Score=28.22 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=15.4
Q ss_pred CCCEEEeccCCC------eEEEEECCCCc
Q 024372 239 LGNIFIAGGEDM------WVHVFDFHTGE 261 (268)
Q Consensus 239 ~~~~~~~gs~d~------~i~~wd~~~g~ 261 (268)
++++++.||... .|++++...+.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~ 371 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKK 371 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence 488888887532 57777766544
No 469
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.43 E-value=34 Score=33.91 Aligned_cols=110 Identities=9% Similarity=-0.019 Sum_probs=65.6
Q ss_pred eEEEEEECCCCCEEEEe--eCCCeEEEEECCCCCCCC--eE--e------cCCcccEEEEEEeCCCCcEEEEeeCCCeEE
Q 024372 104 IVRACAFSEDTHLLLTG--GFEKILRIFDLNRPDAPP--RE--V------GNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (268)
Q Consensus 104 ~v~~v~~~~~~~~l~s~--~~d~~i~~~d~~~~~~~~--~~--~------~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 171 (268)
++..+...+|+...+.. +.+-.|..||+++-.... +. + .....-..++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44445556666544443 344478889986422111 00 0 001122356778876665666777778888
Q ss_pred EEeCCCC-ceEEeecCCCCEEEEEECCCCcEEEEeC-CCeEEEE
Q 024372 172 LWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFW 213 (268)
Q Consensus 172 iwd~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~v~~w 213 (268)
+.-+... ..+..+.......+++|+|-|+.++.+. .|++.=|
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEe
Confidence 8766432 3344455566789999999999998885 4555544
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.14 E-value=83 Score=30.02 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=46.5
Q ss_pred eEEEEEECCCCCEEEEeeCCCeEEEEECCCC----------CCC--CeEe--------cCCcccEEEEEEeCCC---CcE
Q 024372 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRP----------DAP--PREV--------GNSSGSIRTVAWLHSD---QTI 160 (268)
Q Consensus 104 ~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~----------~~~--~~~~--------~~~~~~v~~~~~~~~~---~~~ 160 (268)
.|..+.++|+|+.++-.|..+..-+ .+... +.. .+.. .+....|..+.|.|.+ .++
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5888999999999988887665443 33211 110 1111 1233467889998864 555
Q ss_pred EEEeeCCCeEEEEeCCCC
Q 024372 161 LSSCTDSGGVRLWDARSG 178 (268)
Q Consensus 161 ~~~~~~d~~i~iwd~~~~ 178 (268)
++- +.|+++|+||+...
T Consensus 165 ~vL-tsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVL-TSDNTLRLYDISDP 181 (717)
T ss_pred EEE-ecCCEEEEEecCCC
Confidence 544 45699999999753
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.43 E-value=7.2 Score=37.32 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred ecCCCeeeEEEecC-CCCCcEEEEEeCCCCeEEeeCC--CCCeEEEeeCc-----c---CcEEEEEecCCCcEEEEeeCC
Q 024372 14 GHSRPVVDLFYSPI-TPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGH-----K---GAVWSCCLDANALFSASGSAD 82 (268)
Q Consensus 14 ~h~~~v~~~~f~~~-~~dg~~l~s~s~d~~i~iw~~~--~~~~~~~~~~h-----~---~~V~~~~~~~~~~~l~s~s~D 82 (268)
|-++.|..+.|... .|.|. -.-|.+.||++. .|+....+.-| . ..|.-|-|.++.-++..+-.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cCCCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 44667888888432 24343 233567888654 45543333211 1 223334445566666677788
Q ss_pred CcEEEEeCCCCCeeeeeccCC-----------eEEEEEECCCCCEEEEeeCCCeEEEEEC
Q 024372 83 FTAKLWDALTGDEKHSFEHKH-----------IVRACAFSEDTHLLLTGGFEKILRIFDL 131 (268)
Q Consensus 83 ~~v~iw~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~l~s~~~d~~i~~~d~ 131 (268)
+++++-+..+........|.. .+.--..+|||++++.++.||.++.|.+
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 899987665443211112322 2223347999999999999999998875
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.09 E-value=0.43 Score=41.90 Aligned_cols=135 Identities=14% Similarity=0.192 Sum_probs=81.7
Q ss_pred EecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEE-EEeeCCCeEEEEECCCCCCCCeEec-CCc
Q 024372 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVG-NSS 145 (268)
Q Consensus 68 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~s~~~d~~i~~~d~~~~~~~~~~~~-~~~ 145 (268)
.|-+.+.-++-++.+-.+..||-. ++.......+.....++|..++..+ +.+-..+.+.+||+++.....-+.+ .+.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 344555446667777777778743 3333333344444556677666544 3466788999999976432222222 122
Q ss_pred ccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeec-CCCCEEEEEECCCCcEEEEeC
Q 024372 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD 206 (268)
Q Consensus 146 ~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~ 206 (268)
.. -+.|++....++.. .-.+.+.|++.++.+.+-... +...+.++++.+.+..+.++.
T Consensus 120 ~s--ll~wsKg~~el~ig-~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 120 KS--LLAWSKGTPELVIG-NNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred HH--HHhhccCCcccccc-ccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 11 25677665554444 455889999988877655554 455688899998887665543
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.71 E-value=81 Score=30.10 Aligned_cols=33 Identities=6% Similarity=-0.087 Sum_probs=26.2
Q ss_pred cEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 63 ~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
-+.+++-+|.++-+++++.|+.+++++......
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 455666678898899999999999999865443
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.93 E-value=84 Score=28.62 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=46.4
Q ss_pred EEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCe-EEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCCeEec
Q 024372 64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG 142 (268)
Q Consensus 64 V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~-v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~~~~~ 142 (268)
|..+..++.|...+-.|-+|.+.+.-.........++.+.+ |.|-.++-+.++ ++.+
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~-ftss--------------------- 163 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF-FTSS--------------------- 163 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee-eccC---------------------
Confidence 45556677777776667777666654333222233333222 333222222221 1111
Q ss_pred CCcccEEEEEEeCCC---CcEEEEeeCCCeEEEEeCCCCceE
Q 024372 143 NSSGSIRTVAWLHSD---QTILSSCTDSGGVRLWDARSGKIV 181 (268)
Q Consensus 143 ~~~~~v~~~~~~~~~---~~~~~~~~~d~~i~iwd~~~~~~~ 181 (268)
..-.+..++|.|+. .++++-. .|+.+||||+.+-+.+
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPTEL 203 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcchh
Confidence 00123345565543 4554443 4599999999765544
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.40 E-value=18 Score=34.19 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=29.2
Q ss_pred eeccCCeEEEEEECCCCCEEEEeeCCCeEEEEECC
Q 024372 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (268)
Q Consensus 98 ~~~~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~ 132 (268)
.....+.+.+++-+|.++.++.++.|+.|++|+..
T Consensus 10 ~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~ 44 (1636)
T KOG3616|consen 10 DPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI 44 (1636)
T ss_pred CccccceeeeeeecCCCceEEEEecCCcEEEEeec
Confidence 33344567888889999999999999999999974
No 476
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=69.16 E-value=66 Score=26.75 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=47.8
Q ss_pred EEEEEECCCCcEEEE--eC----C-------CeEEEEeCCCceeeeEEeCCCCce-------eeEEcCCC-----CCEEE
Q 024372 190 VTSAEVSRDGRYITT--AD----G-------SSVKFWDANHFGLVKGYNMPCNTE-------SASLEPKL-----GNIFI 244 (268)
Q Consensus 190 v~~~~~s~~g~~l~~--~~----~-------~~v~~wd~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~ 244 (268)
|..+.+.+++++.+. |. . -.|..||+.+.+.+++|..+.... .+.+.... +..++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 667778888877553 21 1 268899999999999998764322 23333322 22344
Q ss_pred eccCCCeEEEEECCCCcEEeec
Q 024372 245 AGGEDMWVHVFDFHTGEQIAIT 266 (268)
Q Consensus 245 ~gs~d~~i~~wd~~~g~~~~~~ 266 (268)
+=+...-|.|||..+|+...+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEE
T ss_pred eCCCcCcEEEEEccCCcEEEEe
Confidence 4455557999999998876653
No 477
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=68.61 E-value=80 Score=27.50 Aligned_cols=193 Identities=14% Similarity=0.140 Sum_probs=94.9
Q ss_pred CCCcEEEEeeCCCcEEEEeCCCCCeeeeeccCCeEEEEE----ECCCCCE--EEEee-CC---CeEEEEECCCCCCCCeE
Q 024372 71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA----FSEDTHL--LLTGG-FE---KILRIFDLNRPDAPPRE 140 (268)
Q Consensus 71 ~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~----~~~~~~~--l~s~~-~d---~~i~~~d~~~~~~~~~~ 140 (268)
|...+++.....+-+.+||+. ++.+..+.... .+.|. |.-+++. |+.++ .+ +.|++|-+.........
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr-~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGR-PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCC-cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 344566666677889999985 44555554332 22111 1123332 33443 32 56899966421111222
Q ss_pred ecC-------CcccEEEEEE--eCC-CCcEEEEeeCCCeEEEEeC---CCC----ceEEeecCCCCEEEEEECCCCcE-E
Q 024372 141 VGN-------SSGSIRTVAW--LHS-DQTILSSCTDSGGVRLWDA---RSG----KIVQTLETKSPVTSAEVSRDGRY-I 202 (268)
Q Consensus 141 ~~~-------~~~~v~~~~~--~~~-~~~~~~~~~~d~~i~iwd~---~~~----~~~~~~~~~~~v~~~~~s~~g~~-l 202 (268)
... ....+..++. ++. +..++.....+|.+.-|-+ ..+ +.++.|.....+..|.......+ .
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 211 1123455554 343 4455666677787766655 344 35777877778888998876544 4
Q ss_pred EEeCCCeEEEEeCCCc-----eeeeEEeC---CCCceeeEEc--CC-CCCEEEeccCCCeEEEEECCC-CcEEee
Q 024372 203 TTADGSSVKFWDANHF-----GLVKGYNM---PCNTESASLE--PK-LGNIFIAGGEDMWVHVFDFHT-GEQIAI 265 (268)
Q Consensus 203 ~~~~~~~v~~wd~~~~-----~~~~~~~~---~~~~~~~~~~--~~-~~~~~~~gs~d~~i~~wd~~~-g~~~~~ 265 (268)
++-++..|.-|+.+.. ..+..... .....-+.+- .+ .|.++++.-.+...-|||.+. ...+..
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 5667788888887632 12221111 1223334432 22 233444555678899999753 344433
No 478
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=67.02 E-value=47 Score=28.22 Aligned_cols=81 Identities=9% Similarity=0.051 Sum_probs=45.8
Q ss_pred eeecEEeeecCCCeeeEEEecCC----CCCcEEEEEeCCCCeEEeeCCCCCeE---EE-eeCccCcEEEEEecCCCcEEE
Q 024372 6 VAVPLVCHGHSRPVVDLFYSPIT----PDGFFLVSASKDSSPMLRNGETGDWI---GT-FEGHKGAVWSCCLDANALFSA 77 (268)
Q Consensus 6 ~~~~~~~~~h~~~v~~~~f~~~~----~dg~~l~s~s~d~~i~iw~~~~~~~~---~~-~~~h~~~V~~~~~~~~~~~l~ 77 (268)
+..|+....|...+..+.|..-. -.|.++++.-..+.|.......+..+ .. +......+..+++.|||.+.+
T Consensus 242 ~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 242 FVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp S---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 44566665666677788886321 25667776665556655555433211 22 234445899999999998877
Q ss_pred EeeCCCcEE
Q 024372 78 SGSADFTAK 86 (268)
Q Consensus 78 s~s~D~~v~ 86 (268)
+-..+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 766777664
No 479
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.73 E-value=20 Score=19.47 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCEEEeccCCCeEEEEECCC
Q 024372 240 GNIFIAGGEDMWVHVFDFHT 259 (268)
Q Consensus 240 ~~~~~~gs~d~~i~~wd~~~ 259 (268)
+..++.++.|+.++.+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 66788888999999999764
No 480
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=64.74 E-value=1.4e+02 Score=28.84 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=88.2
Q ss_pred CccCcEEEEEec---C----CCcEEEEeeCCCcEEEEeCCCC---------------Ceeeeecc----CCeEEEEEECC
Q 024372 59 GHKGAVWSCCLD---A----NALFSASGSADFTAKLWDALTG---------------DEKHSFEH----KHIVRACAFSE 112 (268)
Q Consensus 59 ~h~~~V~~~~~~---~----~~~~l~s~s~D~~v~iw~~~~~---------------~~~~~~~~----~~~v~~v~~~~ 112 (268)
.-..+|..|.|. . ...+|+ .-....+.|....-. .++..+.+ ..+.-.++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 446788888887 2 123433 334456666662111 12223322 23556789999
Q ss_pred -CCCEEEEeeCCCeEEEEECCCC-C---CCCeEecCCcccE----------EEEEEeCCCCcEEEEeeCCCeEEEEeCCC
Q 024372 113 -DTHLLLTGGFEKILRIFDLNRP-D---APPREVGNSSGSI----------RTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (268)
Q Consensus 113 -~~~~l~s~~~d~~i~~~d~~~~-~---~~~~~~~~~~~~v----------~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 177 (268)
+.+.||.....|...+|++... . ...+......|.+ ..+.|.++...++ .+.. ..+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~r-~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCNR-SKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEcC-CceEEEECCC
Confidence 5678999999999999999211 1 1111111222222 2567766555554 4444 6889999988
Q ss_pred CceEEee---cCCCCEEEEEECCC--Cc-EEEEeCCCeEEEEeCCC
Q 024372 178 GKIVQTL---ETKSPVTSAEVSRD--GR-YITTADGSSVKFWDANH 217 (268)
Q Consensus 178 ~~~~~~~---~~~~~v~~~~~s~~--g~-~l~~~~~~~v~~wd~~~ 217 (268)
......+ .....+..+.-+|. .. |+.++ ..|-..|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 7664312 23356888888887 33 33333 5777777765
No 481
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=63.91 E-value=40 Score=22.36 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.9
Q ss_pred CeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEEEe--CCCeEEEEeCC
Q 024372 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDAN 216 (268)
Q Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~~~v~~wd~~ 216 (268)
+.|..||..+ +......-...+.|.++|++++|..+ ..+.|+++..+
T Consensus 36 ~~Vvyyd~~~--~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE--eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4455666532 22222333557899999999887543 46889988764
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=63.12 E-value=22 Score=19.05 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.7
Q ss_pred CcccEEEEEEeCCCCcEEEEeeCC--CeEEEE
Q 024372 144 SSGSIRTVAWLHSDQTILSSCTDS--GGVRLW 173 (268)
Q Consensus 144 ~~~~v~~~~~~~~~~~~~~~~~~d--~~i~iw 173 (268)
..+......|+|++..++-++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566778999998887777776 666665
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.58 E-value=34 Score=22.87 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=27.4
Q ss_pred eeCCCcEEEEeCCCCCeeeeeccCCeEEEEEECCCCCEEEEe
Q 024372 79 GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120 (268)
Q Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~s~ 120 (268)
+..+|.+.-||..+++.......-..-+.|++++|+..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 445667777888887765555544567889999999866654
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=61.81 E-value=1.4e+02 Score=28.06 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=83.2
Q ss_pred cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC--eEecCCcccEEEEEEeC------CCCcEEEEee-CC--Ce
Q 024372 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLH------SDQTILSSCT-DS--GG 169 (268)
Q Consensus 101 ~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~--~~~~~~~~~v~~~~~~~------~~~~~~~~~~-~d--~~ 169 (268)
..+.|-.+.|.++++.++....+|.|.+||........ .....+...+.--.|.+ ....+++.+. .+ -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 45678889999999999999999999999983221111 11111111111101111 1233444444 21 25
Q ss_pred EEEEeC--CCCceEEee---cCCCCEEEEEEC-CCCcEEEEeCCCeEEEEeCCCceeeeEEeCCCCc-----eeeEEcCC
Q 024372 170 VRLWDA--RSGKIVQTL---ETKSPVTSAEVS-RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLEPK 238 (268)
Q Consensus 170 i~iwd~--~~~~~~~~~---~~~~~v~~~~~s-~~g~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~-----~~~~~~~~ 238 (268)
.|++.+ .+..++..- ..........|+ .+|++.-- .+.+|.+|++-++...++...+... ..+.+.++
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 777877 332322211 111122233333 25544322 5679999999988888888766321 23344544
Q ss_pred CCCEEEeccCCCeEEEEECC
Q 024372 239 LGNIFIAGGEDMWVHVFDFH 258 (268)
Q Consensus 239 ~~~~~~~gs~d~~i~~wd~~ 258 (268)
..+++.-+.. ..|++.|++
T Consensus 287 s~nRvLLs~~-nkIyLld~~ 305 (670)
T PF10395_consen 287 SPNRVLLSVN-NKIYLLDLK 305 (670)
T ss_pred CCCeEEEEcC-CEEEEEeeh
Confidence 4444444333 349999975
No 485
>PLN02153 epithiospecifier protein
Probab=59.45 E-value=1.1e+02 Score=25.93 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=27.9
Q ss_pred CeEEEEeCCCceee--eEEe-CCCCceeeEEcCCCCCEEEeccCC--------------CeEEEEECCCCc
Q 024372 208 SSVKFWDANHFGLV--KGYN-MPCNTESASLEPKLGNIFIAGGED--------------MWVHVFDFHTGE 261 (268)
Q Consensus 208 ~~v~~wd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~gs~d--------------~~i~~wd~~~g~ 261 (268)
..|.+||..+.+-. .... .+..........-.+++++.||.. ..++.||..+.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 35788888764332 2111 122211111111247888888852 157888886554
No 486
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=58.50 E-value=22 Score=17.68 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=13.5
Q ss_pred EEEEecCCCcEEEEeeCCCcEEE
Q 024372 65 WSCCLDANALFSASGSADFTAKL 87 (268)
Q Consensus 65 ~~~~~~~~~~~l~s~s~D~~v~i 87 (268)
..+++.++|.++++-+..+.|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 34556666666666555555554
No 487
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=57.74 E-value=15 Score=33.89 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=54.2
Q ss_pred EEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCC-CcEEEEeCCCCCeeeeec------c-----CCeEEEEEEC
Q 024372 44 MLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLWDALTGDEKHSFE------H-----KHIVRACAFS 111 (268)
Q Consensus 44 ~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~iw~~~~~~~~~~~~------~-----~~~v~~v~~~ 111 (268)
.+=|.....-+..|+.|+.++..++|.+.+..+++++.. ..|.++.++...+..... + ...+..++|+
T Consensus 298 ivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs 377 (788)
T KOG2109|consen 298 IVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFS 377 (788)
T ss_pred EeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhh
Confidence 334555556677889999999999999999999888854 456666664433211111 1 1123456788
Q ss_pred CCCCEEEEeeCCCe
Q 024372 112 EDTHLLLTGGFEKI 125 (268)
Q Consensus 112 ~~~~~l~s~~~d~~ 125 (268)
...++...++.+|+
T Consensus 378 ~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 378 EVSTIRTAGSCEGE 391 (788)
T ss_pred hhcceEeecccCCC
Confidence 87888877776665
No 488
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=57.59 E-value=89 Score=26.17 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=44.9
Q ss_pred EEEEEECCCCcEEEEeCC-CeEEEEeCCCceeeeEEeCCCC------ceeeEEcCCCCCEEEeccCCCeEEEEEC
Q 024372 190 VTSAEVSRDGRYITTADG-SSVKFWDANHFGLVKGYNMPCN------TESASLEPKLGNIFIAGGEDMWVHVFDF 257 (268)
Q Consensus 190 v~~~~~s~~g~~l~~~~~-~~v~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~gs~d~~i~~wd~ 257 (268)
++++...++|.+|+++.. ..|.+.|-++++.+-....+.+ ....++.+ +.+++-.+..++.|.++|-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcC
Confidence 788899999999998864 6788888888777766654411 11233333 3555555566777888875
No 489
>PLN02193 nitrile-specifier protein
Probab=55.97 E-value=1.5e+02 Score=26.54 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=28.8
Q ss_pred CeEEEEeCCCceeeeEEeC---CCCceeeEEcCCCCCEEEeccCC--------------CeEEEEECCCCc
Q 024372 208 SSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGED--------------MWVHVFDFHTGE 261 (268)
Q Consensus 208 ~~v~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gs~d--------------~~i~~wd~~~g~ 261 (268)
..+.++|+.+.+..+.-.. +..........-.+++++.|+.+ ..+++||..+.+
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 4688899876543322111 22111111112247888888853 147888887654
No 490
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=55.80 E-value=72 Score=26.09 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.0
Q ss_pred cccEEEEEEeC------CCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEE----EC-CCCcEEEEeCCCeEEE
Q 024372 145 SGSIRTVAWLH------SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE----VS-RDGRYITTADGSSVKF 212 (268)
Q Consensus 145 ~~~v~~~~~~~------~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~----~s-~~g~~l~~~~~~~v~~ 212 (268)
...|+|++-.. +....++.|+++|.|.|.|.+....+.+++..+....+. +. -|.+.+++..||.|.+
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 34567765432 223467778999999999999988888776543322222 33 5667777788887765
No 491
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.74 E-value=1.4 Score=38.91 Aligned_cols=109 Identities=12% Similarity=0.272 Sum_probs=63.0
Q ss_pred EEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEeecCCCCEEEEEECCCCcEEE--EeCCCeEEEEeCCCceeeeEEeC-
Q 024372 150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNM- 226 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~~~~v~~wd~~~~~~~~~~~~- 226 (268)
...|-+.+.+++.+|.. ..+..||-. ++.+...........++|.-+|..++ +...+.+.+||+.+.. .+....
T Consensus 39 ~~~w~~e~~nlavaca~-tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACAN-TIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESG 115 (615)
T ss_pred eeeEecCCCceehhhhh-hHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhcc
Confidence 34677888887777765 788888843 55555555455566777877776543 3456899999985421 111111
Q ss_pred CCCcee-eEEcCCCCCEEEeccCCCeEEEEECCCCcE
Q 024372 227 PCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (268)
Q Consensus 227 ~~~~~~-~~~~~~~~~~~~~gs~d~~i~~wd~~~g~~ 262 (268)
.....+ ..+++ ....++.|-..+.+.+|+..+...
T Consensus 116 g~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 116 GTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred CcchHHHHhhcc-CCccccccccccceEEEeccchhh
Confidence 001111 22333 455566666667777777654433
No 492
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.65 E-value=1.3e+02 Score=25.38 Aligned_cols=200 Identities=13% Similarity=0.171 Sum_probs=107.1
Q ss_pred eeeEEEecCCCCCcEEEEEeCCCCeEEeeCC-------CCCeEEEeeC-----ccCcEEEEEecCCC------------c
Q 024372 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGE-------TGDWIGTFEG-----HKGAVWSCCLDANA------------L 74 (268)
Q Consensus 19 v~~~~f~~~~~dg~~l~s~s~d~~i~iw~~~-------~~~~~~~~~~-----h~~~V~~~~~~~~~------------~ 74 (268)
-+.|+|+| .+.+-++...-+...+||.. ...++-++.. -.+....+.|.... .
T Consensus 25 ~WGia~~p---~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AWGLSYRP---GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cceeEecC---CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 35899987 55577777788888899886 2234555542 11223333333222 2
Q ss_pred EEEEeeCCCcEEEEeCCCCCe-----eeeecc--CCeE-EEEEECC--CCCEEEEee-CCCeEEEEECCCCCCCC-eEec
Q 024372 75 FSASGSADFTAKLWDALTGDE-----KHSFEH--KHIV-RACAFSE--DTHLLLTGG-FEKILRIFDLNRPDAPP-REVG 142 (268)
Q Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-----~~~~~~--~~~v-~~v~~~~--~~~~l~s~~-~d~~i~~~d~~~~~~~~-~~~~ 142 (268)
.+..++.||+|--|...-... ...+.. ...| +.+++.. .+..|+.+. ..+.|.+||-.-..... ..+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 246678899999998543322 122221 2233 3455543 356666654 56889999853211100 0000
Q ss_pred CC-------------cccEEEEEEeCCC--CcEEEEeeCCCeEEEEeCCCCceEEeecCCCC---EEEEEECC------C
Q 024372 143 NS-------------SGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSR------D 198 (268)
Q Consensus 143 ~~-------------~~~v~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---v~~~~~s~------~ 198 (268)
.. -+...-+.|-.++ .+--..+..-|.|-++|+. |+.++.+..... .-.++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 0011112222111 1222233344789999986 777777754432 33566654 4
Q ss_pred CcEEEEe-CCCeEEEEeCCCceeee
Q 024372 199 GRYITTA-DGSSVKFWDANHFGLVK 222 (268)
Q Consensus 199 g~~l~~~-~~~~v~~wd~~~~~~~~ 222 (268)
|.+|+.- .|++|..||..+++-+-
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceee
Confidence 5666653 58999999987665443
No 493
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.57 E-value=2.1e+02 Score=27.36 Aligned_cols=182 Identities=14% Similarity=0.180 Sum_probs=86.2
Q ss_pred CCCCeEEeeCCCCCeEEEeeCccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeee-e--c-cCCeEEEEEECCCC
Q 024372 39 KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-F--E-HKHIVRACAFSEDT 114 (268)
Q Consensus 39 ~d~~i~iw~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-~--~-~~~~v~~v~~~~~~ 114 (268)
.--.|+|++. +|.+++++.-..+.+-.+.|+.+..++ ....||++.++++........ . + ....|.-+.+..+|
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 3344667764 466666665444577788899877654 567899999999854322110 1 1 11234444554466
Q ss_pred CEEEEeeCCCeEEEEECCCCCCCCeEec---CCcccEEEEEEeCCCC--cEEEEeeCCCeEEEEeCCCCc-eEEeec-CC
Q 024372 115 HLLLTGGFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGK-IVQTLE-TK 187 (268)
Q Consensus 115 ~~l~s~~~d~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~iwd~~~~~-~~~~~~-~~ 187 (268)
-.+.+.+ +..+.+-+...+ ...... ...-+-+|-...+++. .+++.-...=...+....+.. ..+.+. .+
T Consensus 140 Vavlt~~-g~v~~i~~~~~~--~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 140 VAVLTVS-GQVILINGVEEP--KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPN 216 (829)
T ss_pred eEEEecC-CcEEEEcCCCcc--hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCC
Confidence 5444433 233333333221 111110 1111112222222221 111111000001122222211 122232 34
Q ss_pred CCEEEEEECCCCcEEEE-eCCCeEEEEeCCCceeeeEEe
Q 024372 188 SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYN 225 (268)
Q Consensus 188 ~~v~~~~~s~~g~~l~~-~~~~~v~~wd~~~~~~~~~~~ 225 (268)
..+..+.+||+.++++- ...|.|.+-+..-.++.-.++
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 66889999999999874 556777776665444444444
No 494
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=52.11 E-value=84 Score=25.69 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=40.6
Q ss_pred cEEEEeCCCeEEEEeCCCceeeeEEeCCCCceeeEEc--CC-CCCEEEeccCCCeEEEE
Q 024372 200 RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLE--PK-LGNIFIAGGEDMWVHVF 255 (268)
Q Consensus 200 ~~l~~~~~~~v~~wd~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~gs~d~~i~~w 255 (268)
.++++.+++.|.+.|-+.+..+..+..+.-+..+... .+ -+..++.+.-||.||+-
T Consensus 197 cLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred eEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3556678899999999999988888887655444332 21 34567788889998874
No 495
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.02 E-value=2.4e+02 Score=27.65 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCCeEEeeCCCCCe---EEE------ee--CccCcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCe
Q 024372 30 DGFFLVSASKDSSPMLRNGETGDW---IGT------FE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (268)
Q Consensus 30 dg~~l~s~s~d~~i~iw~~~~~~~---~~~------~~--~h~~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 95 (268)
-|+.|..|+.||.+.+|.+..... ... +. -++.+|..+...+.-.++. .-.|+.+.+.++.+.+.
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll-~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLL-ILSDSQIAVHKLPELEP 100 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchh-eecCCcceeeecCcccc
Confidence 477899999999999997765421 111 11 1245666555544443332 23467777777655444
No 496
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=51.26 E-value=1.6e+02 Score=25.39 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=8.7
Q ss_pred CeEEEEeCCCCc
Q 024372 168 GGVRLWDARSGK 179 (268)
Q Consensus 168 ~~i~iwd~~~~~ 179 (268)
+.+.+||..+.+
T Consensus 189 ~~v~~YD~~t~~ 200 (376)
T PRK14131 189 KEVLSYDPSTNQ 200 (376)
T ss_pred ceEEEEECCCCe
Confidence 358888887765
No 497
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=50.43 E-value=1.2e+02 Score=29.22 Aligned_cols=139 Identities=16% Similarity=0.203 Sum_probs=75.6
Q ss_pred EEEeeCCCcEEEEeCCCCCe-eeeec----cCCeEEEEEECCCCCEEEEeeCCCeEEEE--------ECCCCCCCCeEec
Q 024372 76 SASGSADFTAKLWDALTGDE-KHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIF--------DLNRPDAPPREVG 142 (268)
Q Consensus 76 l~s~s~D~~v~iw~~~~~~~-~~~~~----~~~~v~~v~~~~~~~~l~s~~~d~~i~~~--------d~~~~~~~~~~~~ 142 (268)
+..|..++.+-++....... ..... -++.+.++.+++. -+..|.-||+.-.| |.+ + ...+.
T Consensus 550 ic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e-p---~~~~~ 623 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE-P---NISIP 623 (925)
T ss_pred ccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC-C---ccccc
Confidence 34566777777776552221 11111 1223444444433 24445555554443 321 1 11111
Q ss_pred CCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEee----cCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCc
Q 024372 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF 218 (268)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~ 218 (268)
....++...++..+ ++.+ +.+|.|.++...+......+ ++...|+.+....+|-+++-..+..+++++.++.
T Consensus 624 ~g~lPvrsla~~ed---~~wa-s~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 624 TGSLPVRSLAFQED---FVWA-SEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL 699 (925)
T ss_pred cCCccccchhhhhc---eeee-ecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence 12235666665422 3333 34589999988765444433 3346799999999998888777778888877665
Q ss_pred eeeeEE
Q 024372 219 GLVKGY 224 (268)
Q Consensus 219 ~~~~~~ 224 (268)
.....+
T Consensus 700 ~hlqd~ 705 (925)
T KOG3522|consen 700 WHLQDS 705 (925)
T ss_pred CCcccc
Confidence 444433
No 498
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=49.49 E-value=1.6e+02 Score=24.82 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=83.0
Q ss_pred CcEEEEEecCCCcEEEEeeCCCcEEEEeCCCCCeeeeec---cCCeEEEEEECCCCCEEEEeeCCCeEEEEECCCCCCCC
Q 024372 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138 (268)
Q Consensus 62 ~~V~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~s~~~d~~i~~~d~~~~~~~~ 138 (268)
+.+..+.++.+ +..-+-++.-+++.|+.+........ ....-.++.. .|++...+..|.-+-+.|+..+..+.
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 44555666643 44445567789999998766433332 2233444444 47788888866666788987665332
Q ss_pred e--EecCCcccEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCce---EEeecCCCCEEEEEECCCCcEEEEeCCCeEEEE
Q 024372 139 R--EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTADGSSVKFW 213 (268)
Q Consensus 139 ~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~~w 213 (268)
- ......+....++.+ +..-..++ .|+.+.|-|+..... +........+.++..+++..+++..+. .+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~-~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAW-RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEE-eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEE
Confidence 1 111222333455544 22233343 458899999865432 333344446888888888777654332 34444
Q ss_pred eCC
Q 024372 214 DAN 216 (268)
Q Consensus 214 d~~ 216 (268)
|..
T Consensus 239 d~s 241 (370)
T COG5276 239 DVS 241 (370)
T ss_pred ecC
Confidence 443
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=49.30 E-value=49 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=27.3
Q ss_pred CCeeeEEEec--CC-CCCcEEEEEeCCCCeEEeeCC
Q 024372 17 RPVVDLFYSP--IT-PDGFFLVSASKDSSPMLRNGE 49 (268)
Q Consensus 17 ~~v~~~~f~~--~~-~dg~~l~s~s~d~~i~iw~~~ 49 (268)
..|.+++|+| .. ..+.+||.-+.++.+.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 3788999999 33 348899999999999999765
No 500
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.16 E-value=2e+02 Score=27.71 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=46.4
Q ss_pred cEEEEEEeCCCCcEEEEeeCCCeEEEEeCCCCceEEe--ecCCCCEEEEEECCCCcEEEEeCCCeEEEEeCCCceeeeEE
Q 024372 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (268)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~v~~wd~~~~~~~~~~ 224 (268)
.+..+.+.+..+.++++ +..|-+--.++++|+.+.. +........+.+.. + ++.+++.+|.|+..++.+....
T Consensus 37 k~~~~~~~t~~~rlivs-T~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~---~-iS~dg~~lr~wn~~~g~l~~~i 111 (910)
T KOG2103|consen 37 KVNFLVYDTKSKRLIVS-TEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN---T-ISVDGRYLRSWNTNNGILDWEI 111 (910)
T ss_pred eEEEEeecCCCceEEEE-eccchhheecccCCcEEEEEeccCCCcccCcceeE---E-EccCCcEEEeecCCCceeeeec
Confidence 45566666666665554 5668888889999998753 33222111111111 2 4556778999998887655545
Q ss_pred eCCCC
Q 024372 225 NMPCN 229 (268)
Q Consensus 225 ~~~~~ 229 (268)
..+.+
T Consensus 112 ~l~~g 116 (910)
T KOG2103|consen 112 ELADG 116 (910)
T ss_pred ccccc
Confidence 44433
Done!