BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024373
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BZI6|GUCD1_MOUSE Protein GUCD1 OS=Mus musculus GN=Gucd1 PE=2 SV=2
Length = 239
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 15/229 (6%)
Query: 49 LPSAHFVE--VPHINQLFSWDCGLACVLMVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDL 104
L FV+ VP I QL+ WDCGLAC MVLR +G +++ + L E T SIWT+DL
Sbjct: 12 LEPGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDGEFENALQELQLTRSIWTIDL 71
Query: 105 AYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSI 164
AYL++ F V + T TLG + Y ++FY++ T+ RV+ LF +A++ +++E ++
Sbjct: 72 AYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTV 131
Query: 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYIL 215
S +I + + G ++AI LV+ L H + V + SG Y GH+I+
Sbjct: 132 SVQDIQVHLAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIV 189
Query: 216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264
+ GY+ + +PA + ++ EEAR S+GTDED+L + L+
Sbjct: 190 LRGYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFVYLD 238
>sp|Q96NT3|GUCD1_HUMAN Protein GUCD1 OS=Homo sapiens GN=GUCD1 PE=2 SV=2
Length = 240
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 22/226 (9%)
Query: 55 VEVPHINQLFSWDCGLACVLMVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDLAYLLQKFN 112
+ VP I QL+ WDCGLAC MVLR +G +++ + L + T SIWT+DLAYL+ F
Sbjct: 20 LPVPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKLQLTRSIWTIDLAYLMHHFG 79
Query: 113 VGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLM 172
V + T TLG + Y ++FY++ T+ RV+ LF +A++ + +E ++S +I
Sbjct: 80 VRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKDIQAH 139
Query: 173 ILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYILICGYDANS 223
+ G ++AI LV+ L H + V + SG Y GH+I++ GY+ +
Sbjct: 140 LAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHHCFCRTPDYQGHFIVLRGYNRAT 197
Query: 224 -----DEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264
+ DP C ++ EEAR S+GTDED+L + L+
Sbjct: 198 GCIFYNNPAYADPGMC----STSISNFEEARTSYGTDEDILFVYLD 239
>sp|A1TQ53|BIOB_ACIAC Biotin synthase OS=Acidovorax citrulli (strain AAC00-1) GN=bioB
PE=3 SV=1
Length = 354
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 87 IQGLAEQCCTT-SIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTD 141
++GL Q C T + A L+ G Y+ L P Y + Y+E+L T
Sbjct: 146 VKGLGMQTCATLGMLEPHQAQALK--GAGLDYYNHNLDTAPEYYTDVVSTRAYQERLDT- 202
Query: 142 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPG 201
+ R AGI + CG I G+ + + +G +A +D Y S V VPG
Sbjct: 203 -------LRHVREAGISVCCGGIIGMGEAPVHRAGLIAQLANLDPYPESVPINSLVRVPG 255
Query: 202 FYGSDS 207
+DS
Sbjct: 256 TPLADS 261
>sp|Q2Y9Y9|BIOB_NITMU Biotin synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=bioB PE=3 SV=1
Length = 342
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 92 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 149
E C T + A LQ+ G Y+ L +P FY E + T R+D L
Sbjct: 155 EACTTLGMLKPGQAEQLQE--AGLDYYNHNLDTSPE-----FYGEIITTRDYEDRLDTL- 206
Query: 150 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 190
QK R AGI + CG I G+ S +G +A +D Y S
Sbjct: 207 QKVRHAGINVCCGGIVGMGESRRARAGLIAQLANLDPYPES 247
>sp|Q2SBD4|BIOB_HAHCH Biotin synthase OS=Hahella chejuensis (strain KCTC 2396) GN=bioB
PE=3 SV=1
Length = 354
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 92 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETF----YKEQLPTDLVRVDM 147
E C T + T D A L G Y+ L + NY E Y ++L T
Sbjct: 128 ETCMTLGMLTADQASELA--GAGLDYYNHNLDTSENYYGEIITTRTYSDRLET------- 178
Query: 148 LFQKARSAGIKIECGSISGV 167
Q R AG+K+ CG I G+
Sbjct: 179 -LQNVRDAGMKVCCGGIMGM 197
>sp|B8F6C9|BIOB_HAEPS Biotin synthase OS=Haemophilus parasuis serovar 5 (strain SH0165)
GN=bioB PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 70 LACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYS 129
++ ++ ++++G+ C G+ E+ + G Y+ L +P
Sbjct: 129 VSAIIKAVKSLGLETCGTFGMLEEGMAEDLK-----------EAGLDYYNHNLDTDPERY 177
Query: 130 VETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVD 185
+ + R+D L K RSAG+KI CG I G+ + +G ++A +D
Sbjct: 178 HQVIHTRSHDD---RMDTL-GKVRSAGLKICCGGIVGMNETRAERAGLIASLANLD 229
>sp|Q82SL7|BIOB_NITEU Biotin synthase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=bioB PE=3 SV=2
Length = 337
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 92 EQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV--RVDMLF 149
E C T I A L++ G Y+ L P FY E + T R+D L
Sbjct: 150 ETCATLGILKPGQATQLKQ--AGLDYYNHNLDTAPE-----FYGEIITTREYQDRLDTL- 201
Query: 150 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLS 190
++ R A I + CG I G+ S M +G +A +D Y S
Sbjct: 202 EEVRGANINVCCGGIVGLGESRMARAGLIAQLANLDPYPES 242
>sp|Q5U9X3|GPC6A_DANRE G-protein coupled receptor family C group 6 member A OS=Danio rerio
GN=gprc6a PE=1 SV=1
Length = 867
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 18 EDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEV-PHINQLFSWDCGLACVLMV 76
E+ +N+ A+ EC P D +S+ A+ E P + + F W+ G A VL++
Sbjct: 522 ENHYSNITDAD--ECSPCD--------SESMWSLANSTECHPKVFEYFDWNSGFAIVLLI 571
Query: 77 LRTIGI 82
L +G+
Sbjct: 572 LAALGV 577
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,055,335
Number of Sequences: 539616
Number of extensions: 4145930
Number of successful extensions: 9112
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9091
Number of HSP's gapped (non-prelim): 28
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)