Query 024373
Match_columns 268
No_of_seqs 128 out of 524
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:08:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8u_A Putative ABC transporte 99.9 6E-22 2E-26 164.8 13.8 138 55-264 4-141 (156)
2 3b79_A Toxin secretion ATP-bin 99.8 1.5E-19 5.3E-24 144.4 10.4 116 64-250 3-118 (129)
3 3zua_A CLD, alpha-hemolysin tr 99.8 9.5E-18 3.2E-22 137.3 14.4 126 62-264 8-133 (142)
4 3erv_A Putative C39-like pepti 99.7 5.1E-17 1.7E-21 145.9 16.9 183 48-266 28-227 (236)
5 2bu3_A ALR0975 protein; phytoc 98.7 1.7E-07 5.7E-12 84.8 12.2 146 55-250 68-233 (254)
6 2z84_A UFSP1, UFM1-specific pr 91.0 2.4 8.2E-05 37.3 11.2 67 57-123 33-119 (218)
7 1x9y_A Cysteine proteinase; ha 86.9 15 0.00051 34.5 13.9 82 145-242 252-337 (367)
8 1pxv_A Cysteine protease; hydr 83.5 20 0.00069 30.5 14.6 75 145-234 76-154 (183)
9 3oqc_A UFSP2, UFM1-specific pr 82.3 21 0.00073 34.6 13.2 65 57-121 299-386 (481)
10 1cv8_A Staphopain; cysteine pr 82.1 22 0.00076 30.1 14.1 74 146-235 68-146 (174)
11 8pch_A Cathepsin H; hydrolase, 74.5 6.7 0.00023 33.2 6.6 62 165-232 120-188 (220)
12 3ois_A Cysteine protease; alph 66.4 15 0.00052 32.6 7.3 78 165-246 190-275 (291)
13 3u8e_A Papain-like cysteine pr 64.2 15 0.0005 31.3 6.5 63 164-232 114-185 (222)
14 1dki_A Pyrogenic exotoxin B zy 61.9 36 0.0012 31.6 9.2 22 62-83 159-180 (371)
15 3i06_A Cruzipain; autocatalyti 54.4 39 0.0013 28.4 7.5 61 165-232 121-184 (215)
16 3ovx_A Cathepsin S; hydrolase, 53.3 22 0.00077 29.8 5.7 63 165-232 121-187 (218)
17 4g29_A Secreted effector prote 52.4 43 0.0015 28.4 7.1 46 207-255 75-130 (186)
18 3kwz_A Cathepsin K; enzyme inh 51.5 34 0.0012 28.6 6.6 62 165-231 117-183 (215)
19 2xu3_A Cathepsin L1; hydrolase 47.2 49 0.0017 27.8 7.0 63 165-232 118-189 (220)
20 1s4v_A Cysteine endopeptidase; 46.3 42 0.0014 28.6 6.4 62 165-232 120-185 (229)
21 1o0e_A Ervatamin C; plant cyst 43.5 56 0.0019 27.3 6.7 60 165-232 115-175 (208)
22 3dth_A Branched-chain amino ac 43.1 96 0.0033 28.7 8.8 41 146-186 278-318 (372)
23 2cio_A Papain; hydrolase/inhib 42.6 61 0.0021 27.1 6.8 60 165-232 117-177 (212)
24 1yal_A Chymopapain; hydrolase, 39.7 50 0.0017 27.8 5.8 62 165-232 117-181 (218)
25 1iwd_A Ervatamin B; cysteine p 39.2 46 0.0016 28.0 5.5 62 165-232 116-180 (215)
26 1ppo_A Protease omega; hydrola 38.4 50 0.0017 27.7 5.6 62 165-232 117-181 (216)
27 2bdz_A Mexicain; cysteine prot 38.3 74 0.0025 26.7 6.7 60 165-232 117-177 (214)
28 2b1m_A SPE31; papain-like, sug 37.7 88 0.003 26.9 7.2 60 165-232 121-190 (246)
29 3p5u_A Actinidin; SAD, cystein 36.3 73 0.0025 26.7 6.3 62 165-232 120-184 (220)
30 3ioq_A CMS1MS2; caricaceae, cy 36.0 86 0.003 26.1 6.7 59 166-232 118-177 (213)
31 2c0y_A Procathepsin S; proenzy 34.6 68 0.0023 28.8 6.2 61 165-232 218-284 (315)
32 1cqd_A Protein (protease II); 34.3 69 0.0024 27.0 5.9 62 165-232 119-183 (221)
33 3qt4_A Cathepsin-L-like midgut 33.9 1E+02 0.0034 28.0 7.2 62 165-232 232-298 (329)
34 1cs8_A Human procathepsin L; p 33.4 62 0.0021 29.1 5.7 63 165-232 214-285 (316)
35 3qsd_A Cathepsin B-like peptid 32.1 1.1E+02 0.0038 26.1 7.0 63 164-232 157-223 (254)
36 2fo5_A Cysteine proteinase EP- 31.7 93 0.0032 27.2 6.4 62 165-232 125-190 (262)
37 3f75_A Toxopain-2, cathepsin L 31.2 95 0.0032 25.9 6.2 62 165-232 125-191 (224)
38 1by8_A Protein (procathepsin K 31.0 77 0.0026 28.4 5.9 63 165-232 216-283 (314)
39 1m6d_A Cathepsin F, catsf; pap 30.5 67 0.0023 26.8 5.1 61 165-232 116-183 (214)
40 1b0n_B Protein (SINI protein); 29.7 65 0.0022 22.2 4.0 28 139-174 10-37 (57)
41 4f02_C Eukaryotic translation 28.5 18 0.0006 21.2 0.7 25 225-251 2-26 (27)
42 4d8b_A Streptopain; papain fol 28.0 87 0.003 27.8 5.6 22 62-83 41-62 (261)
43 2oul_A Falcipain 2; cysteine p 27.8 75 0.0026 27.2 5.0 49 165-222 135-184 (241)
44 1xkg_A DER P I, major mite fec 27.5 86 0.003 28.2 5.6 64 165-233 203-273 (312)
45 3qj3_A Cathepsin L-like protei 26.3 1.3E+02 0.0045 27.2 6.6 62 165-232 234-300 (331)
46 3bwk_A Cysteine protease falci 26.1 86 0.0029 26.8 5.1 48 165-222 137-186 (243)
47 3cbj_A Cathepsin B; cathepsin 26.0 1E+02 0.0035 26.6 5.7 63 164-232 161-227 (266)
48 3dtg_A Branched-chain amino ac 24.6 3.1E+02 0.011 25.0 8.9 31 146-176 278-308 (372)
49 4gvo_A LMO2349 protein; struct 23.9 51 0.0018 26.9 3.1 60 119-178 10-70 (243)
50 3f5v_A DER P 1 allergen; aller 22.6 88 0.003 26.2 4.4 64 165-232 123-192 (222)
51 1rbl_M Ribulose 1,5 bisphospha 21.7 1.1E+02 0.0037 23.8 4.3 64 168-232 28-108 (109)
52 3zxw_B Ribulose bisphosphate c 20.7 1E+02 0.0035 24.3 4.0 67 168-234 27-109 (118)
53 1pci_A Procaricain; zymogen, h 20.4 1.2E+02 0.0042 27.2 5.1 62 165-232 223-287 (322)
54 2k8j_X P7TM2; P7 polypeptide, 20.2 19 0.00065 21.8 -0.3 8 1-8 13-20 (29)
No 1
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=99.88 E-value=6e-22 Score=164.75 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=105.4
Q ss_pred ccCceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhh
Q 024373 55 VEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFY 134 (268)
Q Consensus 55 ~~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY 134 (268)
.++|+++|.++.|||+|||+||++|||++. +.+.|++.+..+. -|.+
T Consensus 4 ~~~p~~~Q~~~~dcglacLa~i~~~~g~~~-s~~~L~~~~~~~~-----------------------~g~s--------- 50 (156)
T 3k8u_A 4 RHYKLVPQIDTRDCGPAVLASVAKHYGSNY-SIAYLRELSKTNK-----------------------QGTT--------- 50 (156)
T ss_dssp -CCCCCCCSSTTCHHHHHHHHHHHHTTCCC-CHHHHHHHTTCBT-----------------------TBCC---------
T ss_pred CCCceEECCCCCCHHHHHHHHHHHHhCCCC-CHHHHHHHcCCCC-----------------------CCcC---------
Confidence 579999999999999999999999999998 8888887754221 0211
Q ss_pred hhccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEE
Q 024373 135 KEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYI 214 (268)
Q Consensus 135 ~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYV 214 (268)
...+.+.|++.|+.++..+++.+.+. |.+.+.|||++|+.+ +..+|||
T Consensus 51 ----------~~~l~~~a~~~Gl~a~~~~~~~~~~~--l~~~~lP~I~~~~~~--------------------g~~~hfv 98 (156)
T 3k8u_A 51 ----------ALGIVEAAKKLGFETRSIKADMTLFD--YNDLTYPFIVHVIKG--------------------KRLQHYY 98 (156)
T ss_dssp ----------HHHHHHHHHHTTEEEEEEECCGGGGG--CTTCCSCEEEEEEET--------------------TEEEEEE
T ss_pred ----------HHHHHHHHHHCCCeeEEEEeehhhhh--HhcCCCCEEEEEEec--------------------CCCcEEE
Confidence 35667788888888888888877321 234568999999731 1137999
Q ss_pred EEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecC
Q 024373 215 LICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264 (268)
Q Consensus 215 VL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~ 264 (268)
||.|++. +.++|.||+.|.+...++.+||++.|+ | .+|++.-.
T Consensus 99 Vl~~~~~--~~v~I~DP~~g~~~~~ls~~ef~~~w~--G---~~l~~~p~ 141 (156)
T 3k8u_A 99 VVYGSQN--NQLIIGDPDPSVKVTRMSKERFQSEWT--G---LAIFLAPQ 141 (156)
T ss_dssp EEEEEET--TEEEEEECSTTTEEEEEEHHHHHHHEE--E---EEEEEEEC
T ss_pred EEEEEcC--CEEEEEcCCCCcceEEEcHHHHHhhCc--e---EEEEEEcC
Confidence 9999986 589999999984467999999999996 2 46666543
No 2
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1.5e-19 Score=144.42 Aligned_cols=116 Identities=19% Similarity=0.091 Sum_probs=90.7
Q ss_pred CcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHH
Q 024373 64 FSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV 143 (268)
Q Consensus 64 ~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~ 143 (268)
.+.|||+|||+||++|||++. +.+.|++.+.... -|.+
T Consensus 3 ~~~dcgla~L~~i~~~~g~~~-~~~~l~~~~~~~~-----------------------~g~s------------------ 40 (129)
T 3b79_A 3 AMKDPLLNSLIYVSRYYGLAN-SPEALVNGLPLSD-----------------------GKLT------------------ 40 (129)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC-CHHHHHTTCCCBT-----------------------TBCC------------------
T ss_pred CcCCcHHHHHHHHHHHhCCCC-CHHHHHhcCCCcC-----------------------CCCC------------------
Confidence 357999999999999999998 8888887754221 1222
Q ss_pred HHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCC
Q 024373 144 RVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS 223 (268)
Q Consensus 144 Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~ 223 (268)
...+.+.|++.|+.++..+.+.++|.+ .+.|||++|+ .||||||.|++.++
T Consensus 41 -~~~l~~~a~~~Gl~~~~~~~~~~~L~~----l~lP~I~~~~------------------------~~h~vVl~~~~~~~ 91 (129)
T 3b79_A 41 -PFLLPRAAERAGLVAKENRAELEKISS----LILPAILVLK------------------------GGDSCVLNSINMET 91 (129)
T ss_dssp -TTTHHHHHHHHTEEEEEEECCGGGSCG----GGCSEEEEEG------------------------GGEEEEEEEEETTT
T ss_pred -HHHHHHHHHHCCCeEEEEECCHHHCCc----CCCCEEEEEc------------------------CCCEEEEEEEcCCC
Confidence 234667888888888888888887643 3479999998 38999999999854
Q ss_pred CEEEEecCCCCCceeEeCHHHHHHHhh
Q 024373 224 DEFEIRDPASCRKREKVTLKCLEEARK 250 (268)
Q Consensus 224 ~~f~I~DPa~g~~~~~is~~eFe~a~~ 250 (268)
+.++|.||+.+.+...++.+||++.|+
T Consensus 92 ~~~~i~dp~~~~g~~~~~~~ef~~~w~ 118 (129)
T 3b79_A 92 REAEVTTLESGMVPISIPLEDLLEQYT 118 (129)
T ss_dssp TEEEEECTTTTTSCEEEEHHHHHHHEE
T ss_pred ceEEEEccCCCCCcEEeeHHHHHhhCC
Confidence 479999999333467999999999995
No 3
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=99.76 E-value=9.5e-18 Score=137.28 Aligned_cols=126 Identities=15% Similarity=0.178 Sum_probs=96.5
Q ss_pred ccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCch
Q 024373 62 QLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD 141 (268)
Q Consensus 62 Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D 141 (268)
|..+.|||+|||+||++|||++. +.+.|++.+..+. -|.+
T Consensus 8 ~~~~~dcglacLa~i~~~~g~~~-s~~~L~~~~~~~~-----------------------~g~s---------------- 47 (142)
T 3zua_A 8 SCHKIDYGLYALEILAQYHNVSV-NPEEIKHRFDTDG-----------------------TGLG---------------- 47 (142)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCCC-CHHHHHHHTCTTS-----------------------SCCC----------------
T ss_pred CCCCCCcHHHHHHHHHHHcCCCC-CHHHHHHHcCCCc-----------------------CCcC----------------
Confidence 55568999999999999999998 8888887754321 0212
Q ss_pred HHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC
Q 024373 142 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA 221 (268)
Q Consensus 142 ~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~ 221 (268)
...+.+.|++.|+.++..+++.++|. +.+.|||++++. .+|||| .+++.
T Consensus 48 ---~~~l~~aa~~~Gl~a~~~~~~~~~L~----~l~lP~Il~~~~-----------------------g~~~Vv-~~~~~ 96 (142)
T 3zua_A 48 ---LTSWLLAAKSLELKVKQVKKTIDRLN----FISLPALVWRED-----------------------GRHFIL-TKVSK 96 (142)
T ss_dssp ---HHHHHHHHHTTTEEEEEEECCHHHHT----TSSSSEEECCTT-----------------------SCCEEE-EEEET
T ss_pred ---HHHHHHHHHHCCCeeEEeecCHHHHh----cCCCCEEEEEcC-----------------------CCEEEE-EEEeC
Confidence 45677889999999999999888864 346899998752 246766 56886
Q ss_pred CCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecC
Q 024373 222 NSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264 (268)
Q Consensus 222 ~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~ 264 (268)
+++.++|.||+.|. ...++.+||++.|+ | .+|++.-.
T Consensus 97 ~~~~~~I~dP~~g~-~~~~s~~ef~~~w~--G---~~l~~~~~ 133 (142)
T 3zua_A 97 EANRYLIFDLEQRN-PRVLEQSEFEALYQ--G---HIILIASR 133 (142)
T ss_dssp TTTEEEEEETTTTE-EEEEEHHHHHHHCC--S---EEEEEEES
T ss_pred CCCEEEEEcCCCCC-cEEecHHHHHhhCC--C---EEEEEEEC
Confidence 54689999999884 67999999999996 3 46666543
No 4
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=99.74 E-value=5.1e-17 Score=145.87 Aligned_cols=183 Identities=21% Similarity=0.251 Sum_probs=118.4
Q ss_pred CCCCCccccCceecccC--cCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCC
Q 024373 48 ILPSAHFVEVPHINQLF--SWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGAN 125 (268)
Q Consensus 48 ~l~~~~~~~vP~i~Q~~--~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~ 125 (268)
.++.....+||++.|.. ...|++|+|+|+|+|+|+.. +..+|.+..... .+. .+...-|
T Consensus 28 ~~~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~-~~~~la~~l~~~--------------p~~----~~g~~gn 88 (236)
T 3erv_A 28 RDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITV-DKMKLANEIKKV--------------DFM----NDGVRGN 88 (236)
T ss_dssp -CCCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCC-CHHHHHHHSCEE--------------CSE----ETTEECC
T ss_pred CCCceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCC-CHHHHHHHHhhC--------------ccc----ccCCCCC
Confidence 35777778999999985 47799999999999999998 666666553111 000 0000113
Q ss_pred CCC--cchhh--hh---hccCchHHHHHHHHHHHHHcC-Ceeeeec-cCHHHHHHHHhcCCceEEEEEeCcccc------
Q 024373 126 PNY--SVETF--YK---EQLPTDLVRVDMLFQKARSAG-IKIECGS-ISGVEISLMILSGNYIAIALVDQYKLS------ 190 (268)
Q Consensus 126 p~y--~~~~F--Y~---~~~~~D~~Rv~~lf~~A~~~G-i~~~~~~-vs~~~L~~~l~~g~~PaIvLvn~~~L~------ 190 (268)
|+. ...+| -. ..++ ..|++.|++.+ -.+...+ .++++|.+.|++| .|+||.++.++-.
T Consensus 89 P~~gFvG~p~~~~~~g~giy~------~~i~~~a~~y~~~~~~dltG~sl~~L~~~I~~G-~PVIv~~t~~~~p~~~~~~ 161 (236)
T 3erv_A 89 PNEGFVGNIYTFSESGYGVYH------GPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAG-QPVVIITNATFAPLDEDEF 161 (236)
T ss_dssp TTTSEEBCSSCTTSCBCCCCH------HHHHHHHHHHCTTTEEECTTSCHHHHHHHHHTT-CCEEEEEETTSSCCCGGGC
T ss_pred CccCccCCccccCCCcceeec------HHHHHHHHHHhhcceeecCCCCHHHHHHHHHCC-CeEEEEEeCCccccccccc
Confidence 321 01110 00 1122 55778888885 2455444 4899999999998 5999998754311
Q ss_pred cccccccccCCccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecCCC
Q 024373 191 HSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKT 266 (268)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~~~ 266 (268)
..|..+ .+.. .-.+.+|||||+|||+ +.++|+||+.+++..+++.++|++.|...|- -.++++..+
T Consensus 162 ~~W~~~---~G~~--~~~~~~H~VVl~GYd~--~~vyi~DP~~g~~~~~vs~~eFe~~w~~~G~---~AI~~l~~~ 227 (236)
T 3erv_A 162 TTWETN---NGDV--SITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGS---QAISYVKRS 227 (236)
T ss_dssp EEEEET---TEEE--EECTTEEEEEEEEECS--SEEEEECTTSCCSCCEEEHHHHHHHHHHTTC---CEEEECSSC
T ss_pred ceeecC---CCce--eeccCCeEEEEEEEeC--CEEEEECCCCCCccEEEcHHHHHHHHHhcCC---EEEEEECCc
Confidence 112100 0000 0124689999999998 5899999999865579999999999999995 444555544
No 5
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=98.67 E-value=1.7e-07 Score=84.82 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=93.4
Q ss_pred ccCceecccCcCcchHHHHHHHHHHhCCCCCC------------hhHHHHHhcccccchhhHHHHHHHcCceeEEEEeec
Q 024373 55 VEVPHINQLFSWDCGLACVLMVLRTIGINNCN------------IQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITL 122 (268)
Q Consensus 55 ~~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~------------~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tl 122 (268)
+...++.|.+...||+||++|||+.+|++. + -+++-+--.+... ..+..+ .+.|++
T Consensus 68 L~~qf~tQ~n~ayCGlASlaMVLNALgid~-P~~~wk~pwr~~Tqe~mld~~~~~~~--~~~~~v-~~~GiT-------- 135 (254)
T 2bu3_A 68 LSMQFVTQVNQAYCGVASIIMVLNSLGINA-PETAQYSPYRVFTQDNFFSNEKTKAV--IAPEVV-ARQGMT-------- 135 (254)
T ss_dssp HHHHCCCCSSTTCHHHHHHHHHHHHTTCCC---------CCCCCTTTTTC---CTTT--SCHHHH-HHHCCC--------
T ss_pred ccccccccCCCCchHHHHHHHHHHhhCCCC-CCccccCceeeechHhHhcccccccc--cChhhh-ccCCcC--------
Confidence 567889999999999999999999999983 1 0111100000000 112211 233332
Q ss_pred CCCCCCcchhhhhhccCchHHHHHHHHHHHHHcCCeeeee---ccCHHHHHHHHhc----CCceEEEEEeCccccccccc
Q 024373 123 GANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECG---SISGVEISLMILS----GNYIAIALVDQYKLSHSWME 195 (268)
Q Consensus 123 G~~p~y~~~~FY~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~---~vs~~~L~~~l~~----g~~PaIvLvn~~~L~~~~~~ 195 (268)
+.++...|+..|+.++.. ..+++++.+.+.+ .+..+||-.+...|..
T Consensus 136 ----------------------L~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~l~q---- 189 (254)
T 2bu3_A 136 ----------------------LDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQ---- 189 (254)
T ss_dssp ----------------------HHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGGTC----
T ss_pred ----------------------HHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccccCC----
Confidence 467778889999877643 4577777655532 2244454444333322
Q ss_pred ccccCCccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCC-ceeEeCHHHHHHHhh
Q 024373 196 DVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR-KREKVTLKCLEEARK 250 (268)
Q Consensus 196 ~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~-~~~~is~~eFe~a~~ 250 (268)
.-.|||.-|-||+.+++.|.|.|++.-+ ....++.+.|-++=.
T Consensus 190 ------------~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~ 233 (254)
T 2bu3_A 190 ------------ERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMN 233 (254)
T ss_dssp ------------SSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHS
T ss_pred ------------CCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHh
Confidence 1369999999999999999999999643 556788888777654
No 6
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=90.97 E-value=2.4 Score=37.26 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=46.9
Q ss_pred CceecccC----cCcchHHHHHHHHHHhCC---CCCChhHHHHHhc----------ccccc--hhhHHHHHHH-cCceeE
Q 024373 57 VPHINQLF----SWDCGLACVLMVLRTIGI---NNCNIQGLAEQCC----------TTSIW--TVDLAYLLQK-FNVGFS 116 (268)
Q Consensus 57 vP~i~Q~~----~~DCGlACl~MVL~y~g~---~~~~~~~L~el~~----------ttsiw--tidLa~ll~~-~gv~~~ 116 (268)
.-|+.|.. -|-||-=.++|+++|-+. .+.++.+|.+... +++-| |.+..++|.. +|+.++
T Consensus 33 Y~HY~~d~~~D~GWGCgYRnlQml~Swq~y~~~~iPsi~~IQ~~Le~awdkg~~~~GSrkWIGt~E~~~~l~sllgI~ck 112 (218)
T 2z84_A 33 YYHYGCDGLDDRGWGCGYRTLQTLCSWPGGQSSGVPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGR 112 (218)
T ss_dssp CCCTTTTSCCCTTTCHHHHHHHHHHTTTBTCCTTCCCHHHHHHHHHHTTSSCTTCTTCCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEeccCCcccCCcccchhhhHHHHhhccccCCCCCCHHHHHHHHHHccccCCccccccceechHHHHHHHHhhcCCceE
Confidence 44776744 366999999999999322 1224555555321 45566 8999999999 899998
Q ss_pred EEEeecC
Q 024373 117 YFTITLG 123 (268)
Q Consensus 117 ~~T~tlG 123 (268)
.....-|
T Consensus 113 i~~~~~g 119 (218)
T 2z84_A 113 LCHLPRG 119 (218)
T ss_dssp EEEECSC
T ss_pred EEEccCc
Confidence 8776555
No 7
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=86.86 E-value=15 Score=34.50 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCC--eeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCC
Q 024373 145 VDMLFQKARSAGI--KIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN 222 (268)
Q Consensus 145 v~~lf~~A~~~Gi--~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~ 222 (268)
..++++-++..|. ...-+.++.+++.+.+++. .|++++.+.-- -.++....||=+||.||-..
T Consensus 252 ~~q~Iky~qsyG~~~~~~n~~ls~deVk~~id~N-k~I~v~~~~v~--------------~~~n~~~~gHAlavvGyA~~ 316 (367)
T 1x9y_A 252 PNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDN-VGIMILAQSVS--------------QNPNDPHLGHALAVVGNAKI 316 (367)
T ss_dssp HHHHHHHHHHTTEEEEEEESCCCHHHHHHHHHTT-CCEEEEEEETT--------------SCSSSCCCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCcchhhhcCCCCHHHHHHHHhcC-CcEEEEccccc--------------cCCCCccCceeEEEEecccc
Confidence 4567777778774 4556778999999888776 57777666310 01122257999999999532
Q ss_pred --CCEEEEecCCCCCceeEeCH
Q 024373 223 --SDEFEIRDPASCRKREKVTL 242 (268)
Q Consensus 223 --~~~f~I~DPa~g~~~~~is~ 242 (268)
...++|=+|.-.. ...++.
T Consensus 317 ~~~~~y~~WNPW~~~-~~~~sa 337 (367)
T 1x9y_A 317 NDQEKLIYWNPWDTE-LSIQDA 337 (367)
T ss_dssp TTEEEEEEECTTCSS-CEEEET
T ss_pred CCCcEEEEecCccCC-ceeecC
Confidence 2468889999764 333433
No 8
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=83.45 E-value=20 Score=30.53 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcC--CeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC-
Q 024373 145 VDMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA- 221 (268)
Q Consensus 145 v~~lf~~A~~~G--i~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~- 221 (268)
..++.+-++..| +....+.++.+++.+.+++++ |+.++-..- .-.++....||=+||.||-.
T Consensus 76 ~~q~Iky~~s~G~~~~~~nr~ls~neV~~~i~~Nk-~I~v~~~~v--------------~e~~~~~~~gHA~av~Gya~~ 140 (183)
T 1pxv_A 76 PNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNV-GIMILAQSV--------------SQNPNDPHLGHALAVVGNAKI 140 (183)
T ss_dssp HHHHHHHHHHTTCCCEEEESCCCHHHHHHHHHTTC-CEEEEEECC--------------CSSTTSCCCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCcChhHhcCCCCHHHHHHHHhcCC-cEEEEcccc--------------ccCCCCccCceeEEEEeeeec
Confidence 355666777777 567788899999999998875 665544420 00122336799999999953
Q ss_pred -CCCEEEEecCCCC
Q 024373 222 -NSDEFEIRDPASC 234 (268)
Q Consensus 222 -~~~~f~I~DPa~g 234 (268)
+.+.++|=+|--+
T Consensus 141 ~~~~~y~~WNPW~~ 154 (183)
T 1pxv_A 141 NDQEKLIYWNPWDT 154 (183)
T ss_dssp TTEEEEEEECTTCS
T ss_pred CCCeEEEEeCCccC
Confidence 2236888899876
No 9
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=82.32 E-value=21 Score=34.59 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=46.0
Q ss_pred CceecccC----cCcchHHHHHHHHHHhCC------CCCChhHHHHHh----------cccccc--hhhHHHHHHH-cCc
Q 024373 57 VPHINQLF----SWDCGLACVLMVLRTIGI------NNCNIQGLAEQC----------CTTSIW--TVDLAYLLQK-FNV 113 (268)
Q Consensus 57 vP~i~Q~~----~~DCGlACl~MVL~y~g~------~~~~~~~L~el~----------~ttsiw--tidLa~ll~~-~gv 113 (268)
.-|+.|.. -|-||-=.++|++.|+-. .+.++.++.+.. .+++-| |....++|.. +|+
T Consensus 299 Y~HY~qD~~~D~GWGCGYRnlQtl~Swl~~q~y~~~~iPsi~~IQ~~Le~agDk~~~f~GSRkWIGT~Ev~~vL~~llgI 378 (481)
T 3oqc_A 299 YHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGV 378 (481)
T ss_dssp CCCSSBTTBCCTTTCHHHHHHHHHHHHHHHTTSCCSCCCCHHHHHHHHHHHTSSCGGGTTCCCCCCHHHHHHHHHHHHCC
T ss_pred EEEeccCCCCCCCcccchhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCCccccccccceechHHHHHHHHHhcCC
Confidence 45888753 499999999999999722 223455555542 155566 7889999987 899
Q ss_pred eeEEEEee
Q 024373 114 GFSYFTIT 121 (268)
Q Consensus 114 ~~~~~T~t 121 (268)
.++.-...
T Consensus 379 ~cri~~~~ 386 (481)
T 3oqc_A 379 TSKILFVN 386 (481)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 88765543
No 10
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=82.13 E-value=22 Score=30.07 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=50.1
Q ss_pred HHHHHHHHHcC--CeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC--
Q 024373 146 DMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA-- 221 (268)
Q Consensus 146 ~~lf~~A~~~G--i~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~-- 221 (268)
.+.++-++..| +....+.+|.+++.+.+++++.++|.+=+.. ..+....||=+||.||-.
T Consensus 68 ~e~iky~~s~g~~~~~~n~~ls~~eV~~~~~~nk~i~i~~~~ve----------------~~~~~~~gHAlav~Gy~~~~ 131 (174)
T 1cv8_A 68 REMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVE----------------SRNGMHAGHAMAVVGNAKLN 131 (174)
T ss_dssp HHHHHHHHHTTCCCEEESSCCCHHHHHHHHHTTCCEEEEEEESS----------------CBTTBCCEEEEEEEEEEEET
T ss_pred HHHHHHHHHcCCChhhhcCCCCHHHHHHHHhcCCceEEEccccc----------------CCCCCCCceeEEEEeeeeec
Confidence 45666677777 5567788899999999988864445433210 111235799999999964
Q ss_pred -CCCEEEEecCCCCC
Q 024373 222 -NSDEFEIRDPASCR 235 (268)
Q Consensus 222 -~~~~f~I~DPa~g~ 235 (268)
+...++|=+|--..
T Consensus 132 ng~~~y~~WNPW~~~ 146 (174)
T 1cv8_A 132 NGQEVIIIWNPWDNG 146 (174)
T ss_dssp TSCEEEEEECTTCSS
T ss_pred CCceEEEEeCCccCC
Confidence 23468888998763
No 11
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=74.51 E-value=6.7 Score=33.22 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccC-----CCCCcCCcEEEEEEEeCCC--CEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYG-----SDSGYTGHYILICGYDANS--DEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~-----~~~~y~gHYVVL~Gyd~~~--~~f~I~DPa 232 (268)
+.++|++.|.+. .|+.+-++..- +++.. ..+.|. ......+|-|+|.||+.+. +-++|++--
T Consensus 120 ~~~~ik~~l~~~-gPV~~~~~~~~---~f~~Y--~~Giy~~~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 188 (220)
T 8pch_A 120 DEEAMVEAVALY-NPVSFAFEVTN---DFLMY--RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSW 188 (220)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCH---HHHTC--CSSEECCSSCCCSTTTCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhc-CCEEEEEEecc---chhhc--CCCcccCCcCCCCCCcCCcEEEEEEEEccCCeeEEEEECCC
Confidence 567888888765 37888777542 11100 122221 1222468999999998533 347777654
No 12
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=66.39 E-value=15 Score=32.57 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCc-CCcEEEEEEEeCCCCEEEEecCCCC----Cc
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGY-TGHYILICGYDANSDEFEIRDPASC----RK 236 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y-~gHYVVL~Gyd~~~~~f~I~DPa~g----~~ 236 (268)
+.++|+..|.++ .|+.+-++.+ .+++...-..+.|... ... .+|-|+|.||+.+.+.++|++---. .+
T Consensus 190 ~e~~i~~al~~~-gPV~v~~~~~---~~f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~~~~~ywivkNSWG~~WG~~G 265 (291)
T 3ois_A 190 DIDHLKACLAVG-SPFVFGFSVY---NSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDDEIRHFRIRNSWGNNVGEDG 265 (291)
T ss_dssp CHHHHHHHHHTT-CCEEEEEEEE---HHHHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEETTTTEEEEECSBCTTSTBTT
T ss_pred CHHHHHHHHHcC-CCEEEEEEec---cchhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEeCCCCEEEEEeCCCCCCCCCc
Confidence 678899999875 4777655532 1111111001333211 112 3799999999987778999985432 35
Q ss_pred eeEeCHHHHH
Q 024373 237 REKVTLKCLE 246 (268)
Q Consensus 237 ~~~is~~eFe 246 (268)
..+|+.+-|.
T Consensus 266 y~~i~~~~~~ 275 (291)
T 3ois_A 266 YFWMPYEYIS 275 (291)
T ss_dssp EEEEEHHHHT
T ss_pred EEEEEHHHhc
Confidence 7788877664
No 13
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=64.23 E-value=15 Score=31.26 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=35.2
Q ss_pred cCHHHHHHHHhcCCceEEEEEeCcc-cccccccccccCCccCC-----CCCcCCcEEEEEEEeCC---CCEEEEecCC
Q 024373 164 ISGVEISLMILSGNYIAIALVDQYK-LSHSWMEDVIVPGFYGS-----DSGYTGHYILICGYDAN---SDEFEIRDPA 232 (268)
Q Consensus 164 vs~~~L~~~l~~g~~PaIvLvn~~~-L~~~~~~~~~~~~~~~~-----~~~y~gHYVVL~Gyd~~---~~~f~I~DPa 232 (268)
-+.++|++.|+.| |+.+-++.+- -...+.. .+.|.. +....+|-|+|.||+.+ .+.++|++--
T Consensus 114 ~~~~~i~~~l~~G--PV~v~i~~~~~~f~~Y~~----~Giy~~~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSW 185 (222)
T 3u8e_A 114 NSSSALLDAVAKQ--PVSVNIYTSSTSFQLYTG----PGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSW 185 (222)
T ss_dssp SCHHHHHHHHHHS--CEEEEECCCSHHHHTCCC----SSCBCCTTCCCCGGGCCEEEEEEEEEESSTTCEEEEEECSB
T ss_pred CcHHHHHHHHhCC--CEEEEEEecChhhhcEeC----CceECCCcccCCCCcCCEEEEEEEEeecCCCCcEEEEECCC
Confidence 3567788888665 6777666531 0001111 023322 11246899999999853 2457777643
No 14
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Probab=61.92 E-value=36 Score=31.64 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=18.7
Q ss_pred ccCcCcchHHHHHHHHHHhCCC
Q 024373 62 QLFSWDCGLACVLMVLRTIGIN 83 (268)
Q Consensus 62 Q~~~~DCGlACl~MVL~y~g~~ 83 (268)
|....-|...++++||+|+..+
T Consensus 159 ~~~~tGCVAtA~AQIM~y~~~P 180 (371)
T 1dki_A 159 QHAATGSVATATAQIMKYHNYP 180 (371)
T ss_dssp SBCCCCHHHHHHHHHHHHHTCC
T ss_pred CccccChHHHHHHHHHHHhcCC
Confidence 3567889999999999999854
No 15
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=54.44 E-value=39 Score=28.40 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=35.4
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC-CCcCCcEEEEEEEeCCC--CEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD-SGYTGHYILICGYDANS--DEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~-~~y~gHYVVL~Gyd~~~--~~f~I~DPa 232 (268)
+.++|++.|.+. .|+.+-++.. +++. -..+.|... ....+|-|+|.||+.+. +-++|++--
T Consensus 121 ~~~~ik~~l~~~-gPV~v~~~~~----~f~~--Y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 184 (215)
T 3i06_A 121 DEAQIAAWLAVN-GPVAVAVDAS----SWMT--YTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSW 184 (215)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCT----TGGG--CCSSEECSCCCSCCCEEEEEEEEESSSSSCEEEEECSB
T ss_pred hHHHHHHHHHHC-CCEEEEEEch----HHhc--CCCCcccCCCCCccCcEEEEEEEeccCCcEEEEEECCC
Confidence 567788888654 3777777742 1110 012333211 22358999999998543 357777643
No 16
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=53.26 E-value=22 Score=29.82 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=36.0
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC--CCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD--SGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~--~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+. .|+.+-++...- +++. -..+.|... ....+|-|+|.||+.+ .+-++|++--
T Consensus 121 ~~~~ik~~l~~~-gPV~v~~~~~~~--~f~~--y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW 187 (218)
T 3ovx_A 121 REDVLKEAVANK-GPVSVGVDARHP--SFFL--YRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSW 187 (218)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCSH--HHHH--CCSSEECCTTCCSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhc-CCEEEEEEecch--hhhc--ccCceecCCCCCcccCcEEEEEEEeccCCceEEEEECCC
Confidence 567888888875 478877775320 1100 011222211 2356899999999753 2346767643
No 17
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=52.43 E-value=43 Score=28.45 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=30.3
Q ss_pred CCcCCcEEEEEEEeCCCCEEEEecCCCCC----------ceeEeCHHHHHHHhhcCCCC
Q 024373 207 SGYTGHYILICGYDANSDEFEIRDPASCR----------KREKVTLKCLEEARKSFGTD 255 (268)
Q Consensus 207 ~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~----------~~~~is~~eFe~a~~s~GtD 255 (268)
.-+++||||+-..+. +=|+.||.-++ +..-.+.++-.+.|+....+
T Consensus 75 d~p~NH~vVl~kk~g---~eyVfDlTAhQF~n~g~s~l~gPiI~te~~W~~ryq~a~~~ 130 (186)
T 4g29_A 75 EIPTNHFAVVGNKEG---KDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRR 130 (186)
T ss_dssp SSCEEEEEEEEEETT---EEEEEETTGGGGTTTTCTTCCSCEEEEHHHHHHHHHHC---
T ss_pred cCccceEEEEEeecC---ceEEEcccHHHHHhcCCccCCCcccccHHHHHHHHHHHHhh
Confidence 347899999988764 67889997543 22456677777777655543
No 18
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=51.51 E-value=34 Score=28.59 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=35.6
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEeC--CCCEEEEecC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYDA--NSDEFEIRDP 231 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd~--~~~~f~I~DP 231 (268)
+.++|++.|.+. .|+.+-++... .+++. -..+.|... ....+|-|+|.||+. +.+.++|++-
T Consensus 117 ~~~~ik~~l~~~-gPV~v~~~~~~--~~f~~--y~~Giy~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNS 183 (215)
T 3kwz_A 117 NEKALKRAVARV-GPVSVAIDASL--TSFQF--YSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNS 183 (215)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCS--HHHHT--CCSSEECCTTCCTTCCCEEEEEEEEEEETTEEEEEEECS
T ss_pred CHHHHHHHHHHC-CCEEEEEeech--hhhhc--ccCCeECCCCCCCChhhCEEEEEEEeccCCceEEEEECC
Confidence 567888888774 47777777531 01100 012333211 234689999999973 3345777764
No 19
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=47.23 E-value=49 Score=27.78 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=36.0
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEe----C--CCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYD----A--NSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd----~--~~~~f~I~DPa 232 (268)
+.++|++.|.+. .|+.+-++... .+++.. ..+.|... ....+|-|+|.||+ . +.+-++|++--
T Consensus 118 ~~~~ik~~l~~~-GPV~v~~~~~~--~~f~~Y--~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSW 189 (220)
T 2xu3_A 118 QEKALMKAVATV-GPISVAIDAGH--ESFLFY--KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 189 (220)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCS--HHHHTC--CSSEECCTTCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSB
T ss_pred CHHHHHHHHHhc-CCEEEEEeecC--cccccc--cceEEcCCCCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCC
Confidence 677888888874 37777777531 011100 12233211 12468999999998 3 23357777643
No 20
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=46.27 E-value=42 Score=28.57 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=34.6
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC---CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN---SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~---~~~f~I~DPa 232 (268)
+.+.|++.|.+| |+.+-++...- +++.. ..+.|.. -....+|-|+|.||+.+ .+-++|++--
T Consensus 120 ~~~~i~~~l~~G--PV~v~i~~~~~--~f~~Y--~~Giy~~~c~~~~~HaV~iVGyg~~~~g~~yWivkNSW 185 (229)
T 1s4v_A 120 DENALLKAVANQ--PVSVAIDAGGS--DFQFY--SEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSW 185 (229)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSH--HHHTC--CSSEECCCCCCCCCEEEEEEEEEECTTSCEEEEEECSB
T ss_pred cHHHHHHHHhcC--CEEEEEEeCcH--HHhhC--CCcEECCCCCCCCCeEEEEEEeccccCCCCEEEEEeCC
Confidence 456788888775 77777775210 11000 1122211 01135899999999853 2457777654
No 21
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=43.54 E-value=56 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCCCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDANSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++..-- +++.. ..+.|.. .....+|-|+|.||+. +-++|++--
T Consensus 115 ~~~~i~~~l~~G--PV~v~i~~~~~--~f~~Y--~~Gvy~~~c~~~~~HaV~iVGyg~--~yWivkNSW 175 (208)
T 1o0e_A 115 NEXALKQAVAVQ--PSTVAIDASSA--QFQQY--SSGIFSGPCGTKLNHGVTIVGYQA--NYWIVRNSW 175 (208)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSH--HHHTC--CSSEECCCCCSCCCEEEEEEEECS--SEEEEECSB
T ss_pred CHHHHHHHHHhC--CEEEEEEccCc--ccccc--cCceECCCCCCcCCEEEEEEEeCC--CeEEEEcCC
Confidence 456788888775 67776765310 11100 1122211 0123589999999987 588888744
No 22
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=43.06 E-value=96 Score=28.73 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeC
Q 024373 146 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQ 186 (268)
Q Consensus 146 ~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~ 186 (268)
..+.+.|++.|+.++.+.+++++|.+..+++..--+-+.++
T Consensus 278 ~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgT 318 (372)
T 3dth_A 278 DSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGT 318 (372)
T ss_dssp HHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEET
T ss_pred HHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecc
Confidence 45678899999999999999999988777776555656664
No 23
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=42.61 E-value=61 Score=27.13 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCCCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDANSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++..-- +++.. ..+.|.. .....+|-|+|.||+. +-++|++--
T Consensus 117 ~~~~i~~~l~~G--PV~v~i~~~~~--~f~~Y--~~Gvy~~~~~~~~~HaV~iVGyg~--~yWivkNSW 177 (212)
T 2cio_A 117 NEGALLYSIANQ--PVSVVLEAAGK--DFQLY--RGGIFVGPCGNKVDHAVAAVGYGP--NYILIKNSW 177 (212)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSH--HHHTC--CSSEECCCCCSCCCEEEEEEEEET--TEEEEECSB
T ss_pred cHHHHHHHHHhC--CEEEEEeccCc--chhhc--CCceecCCCCCCCCEEEEEEEecC--CeEEEEeCC
Confidence 466788888775 77777765310 11000 1122211 0113589999999987 578888754
No 24
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=39.71 E-value=50 Score=27.81 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=34.8
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++.+- .+++.. ..+.|.. -....+|-|+|.||+.+ .+-++|++--
T Consensus 117 ~~~~i~~~l~~G--PV~v~i~~~~--~~f~~Y--~~Giy~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 181 (218)
T 1yal_A 117 CETSFLGALANQ--PLSVLVEAGG--KPFQLY--KSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSW 181 (218)
T ss_dssp BHHHHHHHHTTS--CEEEEECCCS--HHHHTC--CSSEECCSCCSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhC--CEEEEEeccc--hhcccc--CCceECCCCCCCCCEEEEEEEeeccCCccEEEEEeCC
Confidence 466788888764 7777777531 011000 1122211 01135899999999753 2457777754
No 25
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=39.16 E-value=46 Score=28.03 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=34.2
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++...- +++.. ..+.|.. -....+|-|+|.||+.+ .+-++|++--
T Consensus 116 ~~~~ik~~l~~G--PV~v~i~~~~~--~f~~Y--~~Gvy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSW 180 (215)
T 1iwd_A 116 NESALQSAVASQ--PVSVTVEAAGA--PFQHY--SSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSW 180 (215)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCSH--HHHTC--CSSEECCCCCCCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred cHHHHHHHHHhC--CEEEEEecCCc--chhhc--CCceECCCCCCcCCEEEEEEEEeccCCccEEEEEeCC
Confidence 456788888775 67776765320 11100 1122211 01246899999999753 3357777643
No 26
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=38.39 E-value=50 Score=27.73 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=34.4
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++.+- .+|+.. ..+.|.. -....+|-|+|.||+.+ .+-++|++--
T Consensus 117 ~~~~i~~~l~~G--PV~v~~~~~~--~~f~~Y--~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW 181 (216)
T 1ppo_A 117 NEGNLLNAIAKQ--PVSVVVESKG--RPFQLY--KGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSW 181 (216)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCS--HHHHHC--CSSEECCSCCSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhC--CEEEEEecCC--hhhhhc--CCceECCCCCCCCCEEEEEEEeeccCCccEEEEEeCC
Confidence 566788888775 7777676531 111100 1122211 01135899999999753 2457777644
No 27
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=38.31 E-value=74 Score=26.68 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=35.1
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCCCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDANSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++... .+++.. ..+.|.. -....+|-|+|.||+. +-++|++--
T Consensus 117 ~~~~i~~~l~~g--PV~v~i~~~~--~~f~~Y--~~Giy~~~~~~~~~HaV~iVGyg~--~yWivkNSW 177 (214)
T 2bdz_A 117 DEISLIQAIANQ--PVSVVTDSRG--RGFQFY--KGGIYEGPCGTNTDHAVTAVGYGK--TYLLLKNSW 177 (214)
T ss_dssp BHHHHHHHHHHS--CEEEEECCCS--HHHHTC--CSSEECCSCCSCCCEEEEEEEECS--SEEEEECSB
T ss_pred cHHHHHHHHHhC--CEEEEEeeCh--hHhhcc--cCceecCCCCCCCCeEEEEEEcCC--CeEEEEeCC
Confidence 466788888764 7777777531 011100 1122211 0123689999999986 578888754
No 28
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=37.66 E-value=88 Score=26.88 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=33.8
Q ss_pred CHHHHHHHHhc----CCceEEEEEeCcccccccccccccCCccCC---CCCc-CCcEEEEEEEeC--CCCEEEEecCC
Q 024373 165 SGVEISLMILS----GNYIAIALVDQYKLSHSWMEDVIVPGFYGS---DSGY-TGHYILICGYDA--NSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~----g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~---~~~y-~gHYVVL~Gyd~--~~~~f~I~DPa 232 (268)
+.++|++.|.+ | |+.+-++.. +|+.. ..+.|.. .... .+|-|+|.||+. +.+-++|++--
T Consensus 121 ~~~~ik~~l~~~~~~G--PV~v~i~~~----~f~~Y--~~Giy~~~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 190 (246)
T 2b1m_A 121 TESEAESSLQSFVLEQ--PISVSIDAK----DFHFY--SGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSW 190 (246)
T ss_dssp CHHHHHHHHHHHHHHS--CEEEEECCT----TGGGC--CSSEECCTTCCSSCCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred hHHHHHHHHHhhccCC--CEEEEEEcc----hhhcc--cceeecCCCCCCCCcCceEEEEEEEeccCCceEEEEEeCC
Confidence 45678888877 5 667666641 12100 1222221 1112 689999999975 23457777644
No 29
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=36.35 E-value=73 Score=26.68 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=33.3
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|+.| |+.+-++... .+++.. ..+.|.. .....+|-|+|.||+.+ .+-++|++--
T Consensus 120 ~~~~l~~~l~~G--PV~v~~~~~~--~~f~~Y--~~Giy~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 184 (220)
T 3p5u_A 120 NEWALQTAVAYQ--PVSVALEAAG--YNFQHY--SSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSW 184 (220)
T ss_dssp CHHHHHHHHTTS--CEEEEECCCS--HHHHTC--CSSEECCCCCCSCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred cHHHHHHHHhcC--CEEEEEecCc--hhhccc--cCceECCCCCCccceEEEEEEEecCCCceEEEEECCC
Confidence 566788888544 7777777531 011000 1122211 11235899999999742 2346666643
No 30
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=35.95 E-value=86 Score=26.12 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCCCCEEEEecCC
Q 024373 166 GVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDANSDEFEIRDPA 232 (268)
Q Consensus 166 ~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~~~~f~I~DPa 232 (268)
.+.+.++++.| |+.+-++... .+++.. ..+.|.. .....+|-|+|.||+. +.++|++--
T Consensus 118 ~~~~~~~~~~G--PV~v~i~~~~--~~f~~y--~~Giy~~~~~~~~~HaV~iVGyg~--~yWivkNSW 177 (213)
T 3ioq_A 118 EQALIQRIAIQ--PVSIVVEAKG--RAFQNY--RGGIFAGPCGTSIDHAVAAVGYGN--DYILIKNSW 177 (213)
T ss_dssp HHHHHHHHTTS--CEEEEECCCS--HHHHTC--CSSEECCSCCSCCCEEEEEEEEET--TEEEEECSB
T ss_pred HHHHHHHHHhC--CEEEEEEech--hhhhhc--cCCeEcCCCCCccCceEEEEecCC--CeEEEECCC
Confidence 33456666554 7788777531 011000 1122211 1224589999999986 578887754
No 31
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=34.60 E-value=68 Score=28.80 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCcc----CCCCCcCCcEEEEEEEeC--CCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFY----GSDSGYTGHYILICGYDA--NSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~----~~~~~y~gHYVVL~Gyd~--~~~~f~I~DPa 232 (268)
+.++|+..|.+. .|+.|-++..-- +++.. ..+.| ++. ..+|-|+|.||+. +.+-++|++--
T Consensus 218 ~~~~i~~al~~~-GPV~v~i~~~~~--~f~~Y--~~Gvy~~~~c~~--~~~HaV~iVGyg~~~g~~yWivkNSW 284 (315)
T 2c0y_A 218 REDVLKEAVANK-GPVSVGVDARHP--SFFLY--RSGVYYEPSCTQ--NVNHGVLVVGYGDLNGKEYWLVKNSW 284 (315)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCSH--HHHTE--EEEEECCTTCCS--CCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHHc-CCEEEEEecCch--hhhcc--CCCcccCCCCCC--cCCEEEEEEEEeecCCCcEEEEEcCC
Confidence 567888888774 377877775410 11100 11222 222 4689999999974 33457777644
No 32
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=34.29 E-value=69 Score=26.96 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=34.5
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++... .+++.. ..+.|.. -....+|-|+|.||+.+ .+-++|++--
T Consensus 119 ~~~~i~~~l~~G--PV~v~i~~~~--~~f~~Y--~~Giy~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 183 (221)
T 1cqd_A 119 NEQSLQKAVANQ--PVSVTMDAAG--RDFQLY--RSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSW 183 (221)
T ss_dssp CHHHHHHHHTTS--CEEEEECCCS--HHHHTC--CSSEECCCCCCCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred hHHHHHHHHHhC--CEEEEEeccC--cccccc--cCccccCCCCCcCCeEEEEEEEcccCCCcEEEEEeCC
Confidence 466788888764 7777776531 011100 1122211 01246899999999753 2457777654
No 33
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=33.94 E-value=1e+02 Score=27.99 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=36.5
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|+..|.+. .|+.|-++..- +++.. ..+.|... ....+|-|+|.||+.+ .+-++|++--
T Consensus 232 ~e~~lk~al~~~-GPV~v~i~a~~---~f~~Y--~~GVy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW 298 (329)
T 3qt4_A 232 DENSLADAVGQA-GPVAVAIDATD---ELQFY--SGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSW 298 (329)
T ss_dssp CHHHHHHHHHHT-CCEEEEECCCG---GGTTE--EEEEECCSSCCSSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhC-CCEEEEEecCh---hhhhc--cCceeecCCCCCCcCCEEEEEEEEEeeCCccEEEEEeCC
Confidence 567888888874 48888787642 11100 12222211 1346899999999742 3357777644
No 34
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=33.44 E-value=62 Score=29.08 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=35.0
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEe---C---CCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYD---A---NSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd---~---~~~~f~I~DPa 232 (268)
+.++|+..|.+. .|+.|-++...- +++.. ..+.|... ....+|-|+|.||+ . +.+-++|++--
T Consensus 214 ~~~~ik~~l~~~-GPV~v~i~~~~~--~f~~Y--~~Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSW 285 (316)
T 1cs8_A 214 QEKALMKAVATV-GPISVAIDAGHE--SFLFY--KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSW 285 (316)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCCSH--HHHTE--EEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSB
T ss_pred CHHHHHHHHHhc-CCEEEEEecCCh--hhccc--cCceECCCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCC
Confidence 577888888773 377777775310 11000 11222111 12468999999998 3 22346666643
No 35
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=32.12 E-value=1.1e+02 Score=26.15 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=34.2
Q ss_pred cCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCC--CcCCcEEEEEEEeC--CCCEEEEecCC
Q 024373 164 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDS--GYTGHYILICGYDA--NSDEFEIRDPA 232 (268)
Q Consensus 164 vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~--~y~gHYVVL~Gyd~--~~~~f~I~DPa 232 (268)
-+.++|++.|.+. .|+.+-++.. .+++.. ..+.|.... ...+|-|+|.||+. +.+.++|++--
T Consensus 157 ~~~~~i~~~l~~~-gPv~~~~~~~---~~f~~y--~~Gi~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 223 (254)
T 3qsd_A 157 NDEKAIQKEIMKY-GPVEAGFTVY---EDFLNY--KSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSW 223 (254)
T ss_dssp SCHHHHHHHHHHH-CCEEEEEEEE---GGGGGC--CSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSB
T ss_pred CcHHHHHHHHHHc-CCEEEEEEec---cccccc--cCCeeccCCCCCCCCeEEEEEEEeecCCeeEEEEEeCC
Confidence 3677888888654 3666666542 111100 123332211 12379999999953 33357777654
No 36
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=31.69 E-value=93 Score=27.19 Aligned_cols=62 Identities=11% Similarity=0.216 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC-CCcCCcEEEEEEEeCC---CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD-SGYTGHYILICGYDAN---SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~-~~y~gHYVVL~Gyd~~---~~~f~I~DPa 232 (268)
+.++|++.|.+| |+.+-++.+- .+|+.. ..+.|... ....+|-|+|.||+.+ .+-++|++--
T Consensus 125 ~e~~ik~al~~G--PV~v~i~~~~--~~f~~Y--~sGVy~~~c~~~~~HaV~IVGyg~~~~G~~YWivkNSW 190 (262)
T 2fo5_A 125 SEEDLARAVANQ--PVSVAVEASG--KAFMFY--SEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSW 190 (262)
T ss_dssp CHHHHHHHHHHS--CEEEEECCCS--HHHHTC--CSSEECCCCCCCCCEEEEEEEEEECTTSCEEEEEECSB
T ss_pred hHHHHHHHHHhC--CEEEEEecCh--HHHhcc--CCceECCCCCCcCCEEEEEEEEcccCCCceEEEEEeCC
Confidence 456788888875 7777777531 011000 11222110 1135899999999753 3457777644
No 37
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=31.22 E-value=95 Score=25.89 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=33.7
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-CCCcCCcEEEEEEEeCC----CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-DSGYTGHYILICGYDAN----SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-~~~y~gHYVVL~Gyd~~----~~~f~I~DPa 232 (268)
+.++|++.|.. .|+.+-++...- +++.. ..+.|.. .....+|-|+|.||+.+ .+.++|++--
T Consensus 125 ~~~~l~~~l~~--gPV~v~i~~~~~--~f~~y--~~Giy~~~~~~~~~Hav~iVGyg~~~~~g~~ywivkNSW 191 (224)
T 3f75_A 125 SEAAMKAALAK--SPVSIAIEADQM--PFQFY--HEGVFDASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSW 191 (224)
T ss_dssp CHHHHHHHHHH--SCEEEEECCCSH--HHHTE--EEEEECCCCCCCCCEEEEEEEEEEETTTTEEEEEEECSB
T ss_pred hHHHHHHHHcC--CCEEEEEeccch--hhhcC--ccceECCCCCCccCeEEEEEEEecccCCCCCEEEEECCc
Confidence 56678888874 477777775320 11000 0122210 12346899999999743 2346666643
No 38
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=30.97 E-value=77 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=35.6
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEeC--CCCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYDA--NSDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd~--~~~~f~I~DPa 232 (268)
+.++|+..|.+. .|+.|-++.+.- +++.. ..+.|... ....+|-|+|.||+. +.+-++|++--
T Consensus 216 ~~~~i~~al~~~-GPV~v~i~~~~~--~f~~Y--~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW 283 (314)
T 1by8_A 216 NEKALKRAVARV-GPVSVAIDASLT--SFQFY--SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSW 283 (314)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCCSH--HHHTE--EEECBCCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHHc-CCEEEEEEeChH--Hhhhc--cCceecCCCCCCCCCCeEEEEEEEeccCCceEEEEEcCC
Confidence 567888888763 377777775410 11000 11222111 124689999999973 33457777644
No 39
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=30.49 E-value=67 Score=26.85 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=34.3
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC-----CCCcCCcEEEEEEEeCCC--CEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS-----DSGYTGHYILICGYDANS--DEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~-----~~~y~gHYVVL~Gyd~~~--~~f~I~DPa 232 (268)
+.++|++.|.+. .|+.+-++..-+. .+ ..+.|.. .....+|-|+|.||+.++ +-++|++--
T Consensus 116 ~~~~ik~~l~~~-GPV~v~i~~~~f~-~Y-----~~Giy~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW 183 (214)
T 1m6d_A 116 NEQKLAAWLAKR-GPISVAINAFGMQ-FY-----RHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSW 183 (214)
T ss_dssp CHHHHHHHHHHH-CCEEEEECTHHHH-HC-----CSSEECCCGGGSCTTCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred HHHHHHHHHHhC-CCEEEEEEechhh-hc-----CCceecCCCCcCCCCcCCEEEEEEEEeecCCcEEEEEEeCC
Confidence 566788877653 3777777653110 01 1122211 112458999999997532 357777644
No 40
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=29.74 E-value=65 Score=22.20 Aligned_cols=28 Identities=36% Similarity=0.325 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHh
Q 024373 139 PTDLVRVDMLFQKARSAGIKIECGSISGVEISLMIL 174 (268)
Q Consensus 139 ~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~ 174 (268)
..|.+++ .+...|++.|+ +++||.++|.
T Consensus 10 ~~d~ewl-~LI~~Ak~lGl-------sleEIrefL~ 37 (57)
T 1b0n_B 10 ELDQEWV-ELMVEAKEANI-------SPEEIRKYLL 37 (57)
T ss_dssp CCCHHHH-HHHHHHHHTTC-------CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHcCC-------CHHHHHHHHH
Confidence 3456665 56789999998 7788888875
No 41
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=28.51 E-value=18 Score=21.20 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=16.4
Q ss_pred EEEEecCCCCCceeEeCHHHHHHHhhc
Q 024373 225 EFEIRDPASCRKREKVTLKCLEEARKS 251 (268)
Q Consensus 225 ~f~I~DPa~g~~~~~is~~eFe~a~~s 251 (268)
.+.|+||..|-+ -++.+-+...+++
T Consensus 2 ~irirdpnqggk--diteeimsg~rta 26 (27)
T 4f02_C 2 TIRIRDPNQGGK--DITEEIMSGARTA 26 (27)
T ss_pred cceecCccccch--hhHHHHHhcCccc
Confidence 478999998844 4666555544444
No 42
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=27.96 E-value=87 Score=27.77 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=18.5
Q ss_pred ccCcCcchHHHHHHHHHHhCCC
Q 024373 62 QLFSWDCGLACVLMVLRTIGIN 83 (268)
Q Consensus 62 Q~~~~DCGlACl~MVL~y~g~~ 83 (268)
|....-|-+.+++.||+|+.-+
T Consensus 41 ~~~~tGCVATAmAQIM~yhk~P 62 (261)
T 4d8b_A 41 QHAATGCVATATAQIMKYHNYP 62 (261)
T ss_dssp SBCCCCHHHHHHHHHHHHHTCC
T ss_pred cccccchHHHHHHHHHHHhcCC
Confidence 4557889999999999999754
No 43
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=27.77 E-value=75 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=26.7
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC-CCcCCcEEEEEEEeCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD-SGYTGHYILICGYDAN 222 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~-~~y~gHYVVL~Gyd~~ 222 (268)
+.++|++.| | |+.+-++.. .+|+.. ..+.|... ....+|-|+|.||+.+
T Consensus 135 ~~~~ik~~l--G--PV~v~i~~~---~~f~~Y--~~Giy~~~c~~~~~HaV~iVGyg~~ 184 (241)
T 2oul_A 135 KLKEALRFL--G--PISISVAVS---DDFAFY--KEGIFDGECGDQLNHAVMLVGFGMK 184 (241)
T ss_dssp CHHHHHHHT--C--CEEEEECBC---HHHHTC--CSSBCCSCBCSSCCEEEEEEEEEEE
T ss_pred CHHHHHHhh--C--CEEEEEecC---cchhhc--CCcEEcCcCCCCCCEEEEEEEeccc
Confidence 456788777 4 677766653 111100 12222110 0116899999999753
No 44
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=27.46 E-value=86 Score=28.18 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=36.3
Q ss_pred CHHHHHHHHhc-CCceEEEEEeCcccccccccccccCCccCCC----CCcCCcEEEEEEEeCC--CCEEEEecCCC
Q 024373 165 SGVEISLMILS-GNYIAIALVDQYKLSHSWMEDVIVPGFYGSD----SGYTGHYILICGYDAN--SDEFEIRDPAS 233 (268)
Q Consensus 165 s~~~L~~~l~~-g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~----~~y~gHYVVL~Gyd~~--~~~f~I~DPa~ 233 (268)
+.++|+..|.+ . .|+.|-++.+-. .+++. -..++|... ... +|-|+|.||+.+ .+-++|++--.
T Consensus 203 ~~~~ik~al~~~~-GPV~v~i~~~~~-~~f~~--Y~~GVy~~~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG 273 (312)
T 1xkg_A 203 NANKIREALAQTH-SAIAVIIGIKDL-DAFRH--YDGRTIIQRDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWD 273 (312)
T ss_dssp CHHHHHHHHHHHC-CCEEEEEEESCH-HHHHT--CCSSSCBCCCCSSCCE-EEEEEEEEEEEETTEEEEEEECSBC
T ss_pred CHHHHHHHHHhcC-CCEEEEEEeccc-ccccc--cCCcEEcCCCCCCCcC-ceEEEEEEEeccCCceEEEEEeCCC
Confidence 56788888887 4 377776765320 01110 012333221 224 999999999743 34577777543
No 45
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=26.32 E-value=1.3e+02 Score=27.16 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=35.2
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC---CCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD---SGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~---~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|+..|.+. .|+.+-++..--...+ ..++|... ....+|-|+|.||+.+ .+-++|++--
T Consensus 234 ~e~~lk~al~~~-GPV~v~i~a~~~f~~Y-----~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW 300 (331)
T 3qj3_A 234 DENMLADMVATK-GPVAVAFDADDPFGSY-----SGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSW 300 (331)
T ss_dssp CHHHHHHHHHHH-CCEEEEECCCTTGGGE-----EEEEECCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhC-CCEEEEEEcccccccc-----cCceEeCCCCCCCcCCEEEEEEEEeccCCceEEEEEcCC
Confidence 567888888764 3777777653211111 11222211 1246899999999742 2346777643
No 46
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=26.09 E-value=86 Score=26.82 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=26.9
Q ss_pred CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCC--CCCcCCcEEEEEEEeCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGS--DSGYTGHYILICGYDAN 222 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~--~~~y~gHYVVL~Gyd~~ 222 (268)
+.++|++.| | |+.+-++.. .+++.. ..+.|.. ... .+|-|+|.||+.+
T Consensus 137 ~~~~ik~~l--G--PV~v~i~~~---~~f~~Y--~~Giy~~~c~~~-~~HaV~iVGyg~~ 186 (243)
T 3bwk_A 137 KFKEALRYL--G--PISISIAAS---DDFAFY--RGGFYDGECGAA-PNHAVILVGYGMK 186 (243)
T ss_dssp CHHHHHHHT--C--CEEEEECCC---HHHHTC--CSSSCCCCCCSS-CCEEEEEEEEEEE
T ss_pred CHHHHHHhh--C--CEEEEEecC---hhHHhc--CCceecCCCCCc-CCeEEEEEEecCc
Confidence 466788877 4 677767653 111100 1233321 112 6899999999753
No 47
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=26.02 E-value=1e+02 Score=26.63 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred cCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCC--CcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 164 ISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDS--GYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 164 vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~--~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
-+.++|++.|.+. .|+.+-++..- +++.. ..+.|.... ...+|-|+|.||+.+ .+-++|++--
T Consensus 161 ~~~~~i~~~i~~~-GPV~v~i~~~~---~f~~Y--~~Gvy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSW 227 (266)
T 3cbj_A 161 NSEKDIMAEIYKN-GPVEGAFSVYS---DFLLY--KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 227 (266)
T ss_dssp SCHHHHHHHHHHH-CCEEEEEEEEG---GGGGC--CSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSB
T ss_pred CCHHHHHHHHHhc-CCEEEEEEecc---chhhc--CCeEEecCCCCccCCeEEEEEEecccCCceEEEEEcCC
Confidence 3677888888663 36776666421 12111 123332211 123799999999742 2357777654
No 48
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=24.64 E-value=3.1e+02 Score=25.03 Aligned_cols=31 Identities=32% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCeeeeeccCHHHHHHHHhcC
Q 024373 146 DMLFQKARSAGIKIECGSISGVEISLMILSG 176 (268)
Q Consensus 146 ~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g 176 (268)
..+.+.|++.|+.++.+.++++||.+..+.+
T Consensus 278 ~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~ 308 (372)
T 3dtg_A 278 DSLLQLATDAGFAVEERKIDVDEWQKKAGAG 308 (372)
T ss_dssp HHHHHHHHHHTCEEEECCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHCCceEEEEeCCHHHHHHHhhcC
Confidence 4567899999999999999999998764444
No 49
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=23.91 E-value=51 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=40.3
Q ss_pred EeecCCCCCCcchhhhhhccCchHHHHHHHHHHHHHc-CCeeeeeccCHHHHHHHHhcCCc
Q 024373 119 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSA-GIKIECGSISGVEISLMILSGNY 178 (268)
Q Consensus 119 T~tlG~~p~y~~~~FY~~~~~~D~~Rv~~lf~~A~~~-Gi~~~~~~vs~~~L~~~l~~g~~ 178 (268)
|.+.|.+++|....|..+.=....-.+.-+-+.|+++ |+.++-...+.+.+...|.+|..
T Consensus 10 tl~vg~~~~~pP~~~~d~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~l~~g~~ 70 (243)
T 4gvo_A 10 TITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKV 70 (243)
T ss_dssp EEEEEECSEETTTEEECTTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHHHHTTSC
T ss_pred eEEEEECCCCCCeEEECCCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCC
Confidence 4456777888777776543222233333333457776 99999888998888888888864
No 50
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=22.62 E-value=88 Score=26.16 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=33.0
Q ss_pred CHHHHHHHHhc-CCceEEEEEeCcccccccccccccCCccC---CCCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILS-GNYIAIALVDQYKLSHSWMEDVIVPGFYG---SDSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~-g~~PaIvLvn~~~L~~~~~~~~~~~~~~~---~~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|++.|.+ + .|+.+-++..-. .+++.. ..+.+. ......+|-|+|.||+.+ .+-++|++--
T Consensus 123 ~~~~ik~~l~~~~-gpV~v~~~~~~~-~~f~~Y--~~gi~~~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW 192 (222)
T 3f5v_A 123 NANKIREALAQTH-SAIAVIIGIKDL-DAFRHY--DGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSW 192 (222)
T ss_dssp CHHHHHHHHHHHC-CCEEEEEEESCH-HHHHTC--CSSSCBCCCCSSSCEEEEEEEEEEEEETTEEEEEEECSB
T ss_pred CHHHHHHHHHhcC-CCEEEEEEeccc-hhhhcc--CCCceecCCCCCCccCcEEEEEEEeccCCCEEEEEEcCC
Confidence 56788888887 4 366555442100 001000 011110 112346899999999753 2357777654
No 51
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=21.74 E-value=1.1e+02 Score=23.81 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=36.4
Q ss_pred HHHHHHhcCCceEEEEEeCccc-ccccccccccCCccCCC------------CCcCCcEEEEEEEeCCCC----EEEEec
Q 024373 168 EISLMILSGNYIAIALVDQYKL-SHSWMEDVIVPGFYGSD------------SGYTGHYILICGYDANSD----EFEIRD 230 (268)
Q Consensus 168 ~L~~~l~~g~~PaIvLvn~~~L-~~~~~~~~~~~~~~~~~------------~~y~gHYVVL~Gyd~~~~----~f~I~D 230 (268)
+|.-+|++|=.|+|=+.+.... ..+|.-=. .|-.-+++ ..|.+|||=|.|||..++ .|+|+=
T Consensus 28 QI~Yll~qGw~p~lEf~d~~~~~~~yW~mwk-lPmf~~~d~~~Vl~Ele~C~k~~p~~yVRligfD~~~q~q~~sfIv~R 106 (109)
T 1rbl_M 28 QIEYMIEQGFHPLIEFNEHSNPEEFYWTMWK-LPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKECQTSSFIVHR 106 (109)
T ss_dssp HHHHHHHHTCEEEEEEESCCCTTCCCCEECS-SCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEeccCccccccEEeecc-cCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCCCcEEEEEEEeeC
Confidence 4555667776788878776544 22331000 00000000 125799999999997655 377777
Q ss_pred CC
Q 024373 231 PA 232 (268)
Q Consensus 231 Pa 232 (268)
|+
T Consensus 107 P~ 108 (109)
T 1rbl_M 107 PG 108 (109)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 52
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=20.71 E-value=1e+02 Score=24.33 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHHhcCCceEEEEEeCccc-ccccc--c----ccccC-Ccc----CCCCCcCCcEEEEEEEeCCCC----EEEEecC
Q 024373 168 EISLMILSGNYIAIALVDQYKL-SHSWM--E----DVIVP-GFY----GSDSGYTGHYILICGYDANSD----EFEIRDP 231 (268)
Q Consensus 168 ~L~~~l~~g~~PaIvLvn~~~L-~~~~~--~----~~~~~-~~~----~~~~~y~gHYVVL~Gyd~~~~----~f~I~DP 231 (268)
+|.-+|++|=.|+|=+.|.... ..+|. + +...+ .+. .=...|.||||=|.|+|..++ .|+|+=|
T Consensus 27 QV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p~~yVRliGfD~~~q~q~~sfIv~RP 106 (118)
T 3zxw_B 27 QIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYPNCFIRVVAFDNIKQCQVMSFIVYKP 106 (118)
T ss_dssp HHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCTTSEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCCCceEEEEEEeCCcCEEEEEEEEECC
Confidence 4556677887788888876555 22331 0 00000 000 000125799999999997655 5888988
Q ss_pred CCC
Q 024373 232 ASC 234 (268)
Q Consensus 232 a~g 234 (268)
+..
T Consensus 107 ~~~ 109 (118)
T 3zxw_B 107 NQA 109 (118)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 53
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=20.37 E-value=1.2e+02 Score=27.21 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=33.6
Q ss_pred CHHHHHHHHhcCCceEEEEEeCccc-ccccccccccCCccCCCCCcCCcEEEEEEEeCC--CCEEEEecCC
Q 024373 165 SGVEISLMILSGNYIAIALVDQYKL-SHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN--SDEFEIRDPA 232 (268)
Q Consensus 165 s~~~L~~~l~~g~~PaIvLvn~~~L-~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~--~~~f~I~DPa 232 (268)
+.++|.+.|..| |+.|-++.+-- ...+. .-+.... ++. ..+|-|+|.||+.+ .+-++|++--
T Consensus 223 ~e~~l~~~l~~G--PV~v~i~~~~~~f~~Y~-~Gvy~~~-c~~--~~~HaV~iVGyg~~~g~~yWivkNSW 287 (322)
T 1pci_A 223 NEGNLLNAIAKQ--PVSVVVESKGRPFQLYK-GGIFEGP-CGT--KVDGAVTAVGYGKSGGKGYILIKNSW 287 (322)
T ss_dssp BHHHHHHHHHHS--CEEEEECTTCHHHHTEE-EEEECCS-CCS--CCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred cHHHHHHHHHHC--CEEEEEecccccccccC-CeEeCCC-CCC--CCCEEEEEEEEeccCCccEEEEEeCC
Confidence 456788888775 77777775310 00111 1111111 221 35899999999742 3456776644
No 54
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=20.15 E-value=19 Score=21.80 Aligned_cols=8 Identities=50% Similarity=1.506 Sum_probs=6.3
Q ss_pred CcchhhhH
Q 024373 1 MWPIYFLL 8 (268)
Q Consensus 1 ~~~~~~~~ 8 (268)
|||+.+++
T Consensus 13 ~WpllLll 20 (29)
T 2k8j_X 13 VWPLLLLL 20 (29)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 69988775
Done!