BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024375
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2
Length = 1032
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 74 MRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENR------EALIELSGKVRD--- 124
+ LPSL+ + VA T+EG+ L + + + NR + I G +
Sbjct: 381 VSLPSLKLNLVANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVT 440
Query: 125 ----EWMDTDF---TTWIGANRLYPGVSDALKLASS-RIYIVTSNQSRFVETLLREL--- 173
E D DF + ++ A + + S L SS IYI TS QS+FV TL EL
Sbjct: 441 GALFEREDEDFGPASFFVSAGQRWAASSVGLFAGSSNNIYIATS-QSQFVNTLDSELFQS 499
Query: 174 AGVTITPDRLYGLG 187
A ++ + R YGLG
Sbjct: 500 ARLSASSVRYYGLG 513
>sp|D3G0V0|BIOW_BACPE 6-carboxyhexanoate--CoA ligase OS=Bacillus pseudofirmus (strain
OF4) GN=bioW PE=3 SV=1
Length = 273
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 82 SSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKV------------------- 122
SSVA+G L IKP ++EE L EL G +
Sbjct: 86 SSVADGQATARSLLTEAGIKPQVIEEAYYVLSELTELRGALFIDAATGQRLDDPIKNGVR 145
Query: 123 --RDEWMDTDFTTWIGANRLYPGV--SDALKLASSRIYIVTSNQSRFVETLLRELAGVTI 178
R +W DF+ W+ ++L P + +AL LA+ VT + + E +
Sbjct: 146 VTRMDWPLDDFSCWLNEHQLSPNIRMKEALALATK----VTQHPATIAELCWSD------ 195
Query: 179 TPDRLYGLGTGPKVNV--LKQLQKKPEHQGLRLHFVEDRLATLKNVIKEPELDGWNLYLV 236
PD + G K + QL++ E +G R+ FV+ +KN LD + YL
Sbjct: 196 DPDYITGYVASQKFGYQRISQLKELGEEKGCRIFFVDQ--TKMKN------LDAYINYLT 247
>sp|Q9FHN6|SKS2_ARATH Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana
GN=SKS2 PE=1 SV=1
Length = 592
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 43 LEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLRKSSVAEGLTVEGI--------- 93
+ DW LR ++++G + + +L+ + P SSV +G+ E +
Sbjct: 165 IGDWYTQNHTALRRILDSGKELGMPDGVLINGKGPFKYNSSVPDGIEHETVNVDPGKTYR 224
Query: 94 --LENWLKIKPVIMEEWSENREALIELSGKVRDEWMDTDFTTWIGANRLYPGVSDALKLA 151
+ N + I + ++ LIE G+ + TDF +G + + D + A
Sbjct: 225 IRVHN-VGISTSLNFRIQNHKLLLIETEGRYTSQMNFTDFDVHVGQSYSFLVTMD--QNA 281
Query: 152 SSRIYIVTSNQSRFV-ETLLRELAGVTI 178
+S YIV S +RFV ET+ + + GV I
Sbjct: 282 TSDYYIVAS--ARFVNETVWQRVTGVGI 307
>sp|B0BQ80|RIMN_ACTPJ tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=rimN PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 160 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 215
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 216 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 253
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|B3GY27|RIMN_ACTP7 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=rimN PE=3 SV=2
Length = 184
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 160 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 215
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 216 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 253
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|A3N1E4|RIMN_ACTP2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=rimN PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 160 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 215
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 216 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 253
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|P96680|YDFC_BACSU Uncharacterized transporter YdfC OS=Bacillus subtilis (strain
168) GN=ydfC PE=3 SV=1
Length = 306
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 32 WPSLFDGVDSALEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLR 80
W S F G+ + LE + + + R ++ G LLL +L +MRLP L+
Sbjct: 19 WASAFPGIRAGLEGYTPEHLALFRLLI--GSMALLLFAVLTQMRLPDLK 65
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 70 LLLEMRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 126
L++E R ++ L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q07V09|PROA_RHOP5 Gamma-glutamyl phosphate reductase OS=Rhodopseudomonas palustris
(strain BisA53) GN=proA PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 38 GVDSALEDWIVDQMHTLRPVVETGYDTLLLVRLLLEMRLPSLRKSSVAEGLTVEGILENW 97
G D A+ IV RP V +TLL+ R E L L + G V G E
Sbjct: 249 GADLAMAKAIVLNAKMRRPGVCGAAETLLVDRAAAEADLAPLLSVLIESGCEVRGDAEMQ 308
Query: 98 ---LKIKPVIMEEWS 109
++KPV E+WS
Sbjct: 309 RVDTRVKPVAEEDWS 323
>sp|B3QPX0|HRCA_CHLP8 Heat-inducible transcription repressor HrcA OS=Chlorobaculum parvum
(strain NCIB 8327) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 146 DALKLASSRIYIVTSNQSRFVETLLRELAG----------VTITPDRLYGL 186
D ++LAS+RI +V + QS FV+T++ EL V I +RL GL
Sbjct: 146 DIVQLASTRIMVVIAIQSLFVKTIVMELTAEISRQKIDDVVNILNERLSGL 196
>sp|Q8KCD6|HRCA_CHLTE Heat-inducible transcription repressor HrcA OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 146 DALKLASSRIYIVTSNQSRFVETLLREL 173
D ++LASSRI +V + QS FV+T++ EL
Sbjct: 146 DIVQLASSRIMVVIAIQSLFVKTIVMEL 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,276,196
Number of Sequences: 539616
Number of extensions: 4009973
Number of successful extensions: 11022
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11020
Number of HSP's gapped (non-prelim): 15
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)