Citrus Sinensis ID: 024378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKTEK
Secondary Structure (PSIPRED)
cccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccEEccccHHHHHHHHHHHHHccccccHHHHHHHHccccEEEEEHHHHHHHHcccEEEEEEEEEcccccccHHHHHHccccHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEccccccccccccHHHHHHHHHcccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccccccHHHHHHHcccccEEHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHccHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHccccEEEEEEEccEcccHHHcccccHHHccccccccEEEEEEEEEcccccEEEEEccccccccEEEcHHHHHHHHHHccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MWPIYFLLNKILrteeeedqvanvnganmveccpsdqspsgrkcgdsilpsahfvevphinqlfswDCGLACVLMVLRTIGinncniqglaeqccttsiWTVDLAYLLQKFNVGFSYFTItlganpnysvetfykeqlptdlVRVDMLFQKARSAGikiecgsisgVEISLMILSGNYIAIALVDQyklshswmedvivpgfygsdsgytgHYILICgydansdefeirdpascrkREKVTLKCLEEARksfgtdedLLLISLEKTEK
Flexible Loop (DISEMBL)
MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSagikiecgsiSGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDpascrkrekVTLKCLEearksfgtdedlllislektek
Low Complexity Region (SEG)
MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKTEK
Disordered region (IsUnstruct)
**********************************************SILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRD***CR**EKVTLKCLEE*********DLLLI*******
Disordered Region (DISOPRED)
MWPIYFLLNKIL**************************************SAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEK***
Disordered Region (DISEMBL)
MWPIYFLLNKILRTEEEEDQVANVNGANMVECCP*********CGDSILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKTEK
Disordered Region (DISPRO)
MWPIYFLLNKILRTE*******************************SILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKTEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q8BZI6	239	Protein GUCD1 OS=Mus musc	yes	no	0.798	0.895	0.349	5e-28
Q96NT3	240	Protein GUCD1 OS=Homo sap	yes	no	0.761	0.85	0.340	1e-25

>sp|Q8BZI6|GUCD1_MOUSE Protein GUCD1 OS=Mus musculus GN=Gucd1 PE=2 SV=2

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 15/229 (6%)

Query: 49  LPSAHFVE--VPHINQLFSWDCGLACVLMVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDL 104
           L    FV+  VP I QL+ WDCGLAC  MVLR +G +++   +  L E   T SIWT+DL
Sbjct: 12  LEPGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDGEFENALQELQLTRSIWTIDL 71

Query: 105 AYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSI 164
           AYL++ F V   + T TLG +  Y  ++FY++   T+  RV+ LF +A++  +++E  ++
Sbjct: 72  AYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTV 131

Query: 165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYIL 215
           S  +I + +  G ++AI LV+   L H  +    V     + SG         Y GH+I+
Sbjct: 132 SVQDIQVHLAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIV 189

Query: 216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264
           + GY+  +      +PA   +    ++   EEAR S+GTDED+L + L+
Sbjct: 190 LRGYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFVYLD 238

Mus musculus (taxid: 10090)

>sp|Q96NT3|GUCD1_HUMAN Protein GUCD1 OS=Homo sapiens GN=GUCD1 PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 22/226 (9%)

Query: 55  VEVPHINQLFSWDCGLACVLMVLRTIG-INNCNIQ-GLAEQCCTTSIWTVDLAYLLQKFN 112
           + VP I QL+ WDCGLAC  MVLR +G +++   +  L +   T SIWT+DLAYL+  F 
Sbjct: 20  LPVPVIQQLYHWDCGLACSRMVLRYLGQLDDSEFERALQKLQLTRSIWTIDLAYLMHHFG 79

Query: 113 VGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLM 172
           V   + T TLG +  Y  ++FY++   T+  RV+ LF +A++  + +E  ++S  +I   
Sbjct: 80  VRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVLVEKCTVSVKDIQAH 139

Query: 173 ILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSG---------YTGHYILICGYDANS 223
           +  G ++AI LV+   L H  +    V     + SG         Y GH+I++ GY+  +
Sbjct: 140 LAQG-HVAIVLVNSGVL-HCDLCSSPVKYCCFTPSGHHCFCRTPDYQGHFIVLRGYNRAT 197

Query: 224 -----DEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264
                +     DP  C      ++   EEAR S+GTDED+L + L+
Sbjct: 198 GCIFYNNPAYADPGMC----STSISNFEEARTSYGTDEDILFVYLD 239

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
225449311	280	PREDICTED: uncharacterized protein C22or	1.0	0.957	0.708	1e-108
224098493	269	predicted protein [Populus trichocarpa]	0.973	0.970	0.686	1e-102
356539907	282	PREDICTED: uncharacterized protein C22or	0.970	0.921	0.648	1e-94
351723633	281	guanylyl cyclase [Glycine max] gi|116668	0.966	0.921	0.648	3e-94
350538261	275	guanylyl cyclase [Solanum lycopersicum]	0.973	0.949	0.647	3e-93
449441342	282	PREDICTED: uncharacterized protein C22or	0.992	0.943	0.619	3e-92
163111774	286	guanylyl cyclase [Ipomoea nil]	0.985	0.923	0.642	7e-92
18415044	274	guanylyl cyclase 1 [Arabidopsis thaliana	0.988	0.967	0.636	2e-91
297810693	274	hypothetical protein ARALYDRAFT_487393 [	0.985	0.963	0.642	1e-90
255566548	299	Protein C22orf13, putative [Ricinus comm	0.794	0.712	0.779	2e-90

>gi|225449311|ref|XP_002277052.1| PREDICTED: uncharacterized protein C22orf13 homolog [Vitis vinifera] gi|296086142|emb|CBI31583.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/268 (70%), Positives = 219/268 (81%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHI 60
           MWP+Y L NK L+TEEE    A+     +VE    +Q PS  KC +  LP +HFVEVPH+
Sbjct: 1   MWPLYLLFNKFLKTEEENAHEADEYPKGLVESYSLEQLPSNGKCPNVNLPHSHFVEVPHM 60

Query: 61  NQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTI 120
           NQL +WDCGLACVLMVLRT GINNCNIQ L E CCTTSIWTVDLAYLLQKF+V FSYFT+
Sbjct: 61  NQLSTWDCGLACVLMVLRTFGINNCNIQALEELCCTTSIWTVDLAYLLQKFSVSFSYFTV 120

Query: 121 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 180
           TLGANPN+SVETFYK+QL TDLVRVD LF+KA  AGI I+C SISG EISL+ILSG YIA
Sbjct: 121 TLGANPNFSVETFYKDQLATDLVRVDSLFKKAMEAGIDIQCRSISGDEISLLILSGKYIA 180

Query: 181 IALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKV 240
           IAL+DQYKLS SW+E+V V GF G  S YTGHY++ICGYD ++DEFEIRDPAS RK E++
Sbjct: 181 IALIDQYKLSQSWLENVHVSGFCGGYSEYTGHYVVICGYDVDTDEFEIRDPASSRKHERI 240

Query: 241 TLKCLEEARKSFGTDEDLLLISLEKTEK 268
           +  CLEEARKSFGTDEDLLLIS+EKT++
Sbjct: 241 SSNCLEEARKSFGTDEDLLLISMEKTKR 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098493|ref|XP_002311194.1| predicted protein [Populus trichocarpa] gi|222851014|gb|EEE88561.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/268 (68%), Positives = 217/268 (80%), Gaps = 7/268 (2%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDS--ILPSAHFVEVP 58
           MWP+Y LLNKIL  ++   +    +G  +V+      S S RKC D+  +LP +HFV+VP
Sbjct: 1   MWPLYLLLNKILNIQDLVVEEGKPDG--LVQ---PSSSSSSRKCEDTAAVLPCSHFVQVP 55

Query: 59  HINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYF 118
           HI QL SWDCGLACVLM L TIGINNC+IQGLA+ CCT+SIWTVDLAYLLQK++V FS++
Sbjct: 56  HIKQLHSWDCGLACVLMALNTIGINNCSIQGLADLCCTSSIWTVDLAYLLQKYSVSFSFY 115

Query: 119 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 178
           T+TLGANPNYSVETFYKEQLP DLVRVDMLFQKAR  GI I+C SI+  EISL ILSG Y
Sbjct: 116 TVTLGANPNYSVETFYKEQLPADLVRVDMLFQKARGEGINIQCRSINETEISLFILSGKY 175

Query: 179 IAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKRE 238
           IAIALV+QYKLSHSW+E+ I+PG  G +SGY GHYI+ICGYD  +DEFEIRDPA+ RK E
Sbjct: 176 IAIALVNQYKLSHSWLENAILPGLNGGNSGYAGHYIVICGYDTGTDEFEIRDPAASRKHE 235

Query: 239 KVTLKCLEEARKSFGTDEDLLLISLEKT 266
           +++ +CLEEARKSFGTDEDLLLISLE  
Sbjct: 236 RMSSRCLEEARKSFGTDEDLLLISLENA 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539907|ref|XP_003538434.1| PREDICTED: uncharacterized protein C22orf13 homolog [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/270 (64%), Positives = 209/270 (77%), Gaps = 10/270 (3%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPS-DQSPSGRKCGDSILPS---AHFVE 56
           MWPI  L NKIL+  +E      + G N+    P   Q PS     DS  PS   +HF+E
Sbjct: 1   MWPICLLFNKILKAGDE----GELKGDNLNAIDPYLFQQPSINI--DSHPPSLRCSHFIE 54

Query: 57  VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFS 116
           VPHINQ+++WDCGLACVLMVL+TIG+NNC+IQ LAE CCTTSIWTVDLAYLLQ+F V FS
Sbjct: 55  VPHINQIYTWDCGLACVLMVLKTIGVNNCDIQTLAELCCTTSIWTVDLAYLLQRFAVAFS 114

Query: 117 YFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSG 176
           YFT+T GANPNYS+E+FYKE+LP DLVRVD+LFQKA  AGI I+C SIS  EIS++ILSG
Sbjct: 115 YFTVTFGANPNYSIESFYKEELPNDLVRVDLLFQKAVEAGIDIQCRSISEEEISILILSG 174

Query: 177 NYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRK 236
            YIAI LVD  KLSH   EDV +PG + ++ GYTGHY+LICGYDA +D FEIRDPAS +K
Sbjct: 175 KYIAIVLVDHNKLSHVLQEDVPMPGLFSNNPGYTGHYVLICGYDAGADMFEIRDPASSKK 234

Query: 237 REKVTLKCLEEARKSFGTDEDLLLISLEKT 266
            ++++ K LEEAR +FGTDEDLLLISLEK+
Sbjct: 235 HKRISSKSLEEARNTFGTDEDLLLISLEKS 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723633|ref|NP_001236262.1| guanylyl cyclase [Glycine max] gi|116668552|gb|ABK15530.1| guanylyl cyclase [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/270 (64%), Positives = 211/270 (78%), Gaps = 11/270 (4%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPS-DQSPSGRKCGDSILPS---AHFVE 56
           MWPI  L NKIL+  +E      + G N+    P   Q PS     DS  PS   +HF+E
Sbjct: 1   MWPICLLFNKILKAGDE----GELKGDNLNAIDPYLFQQPSINI--DSHPPSLRCSHFIE 54

Query: 57  VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFS 116
           VPHINQ+++WDCGLACVLMVL+TIG+NNC+IQ LAE CCTTSIWTVDLAYLLQ+F V FS
Sbjct: 55  VPHINQIYTWDCGLACVLMVLKTIGVNNCDIQTLAELCCTTSIWTVDLAYLLQRFAVAFS 114

Query: 117 YFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSG 176
           YFT+T GANPNY +E+FYKE+LP DLVRVD+LFQKA  AGI I+C SIS  EIS++ILSG
Sbjct: 115 YFTVTFGANPNYCIESFYKEELPNDLVRVDLLFQKAMEAGIDIQCRSISAEEISILILSG 174

Query: 177 NYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRK 236
            Y+AIALVD  KLSH  ++DV VPG + ++SGYTGHY+LICGYDA +D FEIRDP S +K
Sbjct: 175 KYVAIALVDHNKLSHV-LQDVPVPGVFSNNSGYTGHYVLICGYDAGADMFEIRDPGSSKK 233

Query: 237 REKVTLKCLEEARKSFGTDEDLLLISLEKT 266
            ++++ K LEEARK+FGTDEDLLLISLEK+
Sbjct: 234 HKRISSKSLEEARKAFGTDEDLLLISLEKS 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538261|ref|NP_001234334.1| guanylyl cyclase [Solanum lycopersicum] gi|116668554|gb|ABK15531.1| guanylyl cyclase [Solanum lycopersicum]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/267 (64%), Positives = 206/267 (77%), Gaps = 6/267 (2%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHI 60
           MWP++ LL+K L TEE+  + +     ++V      +   GR      +  ++FV+VPHI
Sbjct: 1   MWPLFVLLSKFLGTEEDNTEESEREHLSLVL-----KQSLGRDEFHGTVSGSYFVDVPHI 55

Query: 61  NQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTI 120
           NQL SWDCGLACVLMVLR +GI + N+Q L E CCTTSIWTVDLAYLL+KF+V FSYFT+
Sbjct: 56  NQLHSWDCGLACVLMVLRFLGIKDGNMQELEEFCCTTSIWTVDLAYLLKKFSVSFSYFTV 115

Query: 121 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 180
           TLGANP++SVETFYKEQLP DLVRVDMLFQKAR AGI IEC SIS  EISL+ILSGN++A
Sbjct: 116 TLGANPSFSVETFYKEQLPNDLVRVDMLFQKARDAGISIECRSISSEEISLLILSGNFLA 175

Query: 181 IALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKV 240
           I LVDQYKLSHSW+ DV           YTGHYI+ICGYD+++DEFEIRDPAS RK  +V
Sbjct: 176 ITLVDQYKLSHSWL-DVCASDLCIDTPDYTGHYIVICGYDSDADEFEIRDPASSRKYGRV 234

Query: 241 TLKCLEEARKSFGTDEDLLLISLEKTE 267
           T KCLE+ARKSFGTDEDLLLI +E+ E
Sbjct: 235 TSKCLEKARKSFGTDEDLLLIRVEREE 261

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441342|ref|XP_004138441.1| PREDICTED: uncharacterized protein C22orf13 homolog [Cucumis sativus] gi|449495307|ref|XP_004159795.1| PREDICTED: uncharacterized protein C22orf13 homolog [Cucumis sativus]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/268 (61%), Positives = 204/268 (76%), Gaps = 2/268 (0%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHFVEVPHI 60
           MWP Y L NKIL+ EE  +     +  + VE  P +   S  +C   +LP +  +EVPHI
Sbjct: 1   MWPFYLLFNKILKLEEPRE--LGGDDLSFVEVYPFESFLSKIRCDAPVLPRSQLIEVPHI 58

Query: 61  NQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTI 120
           NQL  WDCGLACVLMVL  +GIN C+IQ LA+ C T SIWTVDLAYLLQ+F+V FSYFT+
Sbjct: 59  NQLQQWDCGLACVLMVLNILGINGCDIQSLADLCGTRSIWTVDLAYLLQRFSVSFSYFTV 118

Query: 121 TLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIA 180
           T GA+PNYSVE+FYKE+L  DLVRVD LFQKA  AGIKIEC S+S  +ISL++LSG Y+A
Sbjct: 119 TFGADPNYSVESFYKEELANDLVRVDRLFQKALEAGIKIECRSLSKEDISLLMLSGIYVA 178

Query: 181 IALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKV 240
           I LVDQ +LS SW+ED++V G   SDS YTGHYI++CGYDA++DEFEIRDPAS RK  ++
Sbjct: 179 IVLVDQRRLSGSWLEDILVSGICDSDSSYTGHYIVVCGYDADADEFEIRDPASTRKHVRI 238

Query: 241 TLKCLEEARKSFGTDEDLLLISLEKTEK 268
           +  CL+ ARK FGTDED+LL+SLEK+ K
Sbjct: 239 SSNCLDGARKCFGTDEDILLVSLEKSGK 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163111774|gb|ABG67691.2| guanylyl cyclase [Ipomoea nil]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 171/266 (64%), Positives = 203/266 (76%), Gaps = 2/266 (0%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVECCPSDQSPSGRKCGDSILPSAHF-VEVPH 59
           +WP   LL+K +R+++E+ Q    N   +V   P  QS   R    ++L S  F VEVPH
Sbjct: 9   VWPFCILLSKFMRSDDEDAQQPAGNEFALVGSFPFKQSLD-RVESKAVLSSKSFSVEVPH 67

Query: 60  INQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFT 119
           + QL++WDCGLACV+MVLRT+GI N NI+ LA+ C TTSIWTVDLAY+L+KF+V FSYFT
Sbjct: 68  VKQLYTWDCGLACVVMVLRTLGIYNSNIEELAQSCSTTSIWTVDLAYMLRKFSVNFSYFT 127

Query: 120 ITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYI 179
           IT+GANPN+ VETFYKEQLP+DL RV+ LFQKAR AGI IEC SISG E+ ++ILSGN I
Sbjct: 128 ITIGANPNFCVETFYKEQLPSDLARVNTLFQKAREAGINIECRSISGEEMCMLILSGNCI 187

Query: 180 AIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREK 239
           AIALVD +KLSH W ED  +  FY    GYTGHY++ICGYDA  DEFEIRDPAS RK EK
Sbjct: 188 AIALVDHHKLSHYWSEDGCIQNFYPKSPGYTGHYVVICGYDAAMDEFEIRDPASSRKHEK 247

Query: 240 VTLKCLEEARKSFGTDEDLLLISLEK 265
           VT + L EARKSFGTDEDLLLI LEK
Sbjct: 248 VTSRRLAEARKSFGTDEDLLLIHLEK 273

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415044|ref|NP_568159.1| guanylyl cyclase 1 [Arabidopsis thaliana] gi|21436487|gb|AAM51559.1| putative guanylate cyclase [Arabidopsis thaliana] gi|87116632|gb|ABD19680.1| At5g05930 [Arabidopsis thaliana] gi|110738420|dbj|BAF01136.1| hypothetical protein [Arabidopsis thaliana] gi|332003558|gb|AED90941.1| guanylyl cyclase 1 [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/267 (63%), Positives = 205/267 (76%), Gaps = 2/267 (0%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNGANMVE--CCPSDQSPSGRKCGDSILPSAHFVEVP 58
           MWP+ FLLNK+LR EE    + + NG +     C   D   S  K  D+ LPS+  ++VP
Sbjct: 1   MWPLCFLLNKLLRVEERNQGILDGNGDSTFPKYCLFDDPLVSDGKYRDAGLPSSSHMDVP 60

Query: 59  HINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYF 118
           H++QL SWDCGLACVLMVLR  GI +C ++ LAE C T SIWTVDLAYLLQKF V FSY+
Sbjct: 61  HVHQLASWDCGLACVLMVLRASGIASCTLEDLAEICSTNSIWTVDLAYLLQKFCVEFSYY 120

Query: 119 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 178
           TIT GANPNYS+E FYKEQLP DLVRVD+LF+KA  +GI I+C S+S  EIS ++LSGNY
Sbjct: 121 TITFGANPNYSIEEFYKEQLPEDLVRVDLLFRKAHESGIIIQCRSVSIHEISCLLLSGNY 180

Query: 179 IAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKRE 238
           IAIALVDQ KLS SW+E+V+V G + S+S YTGHY++ICGYDA  DEFEIRDPAS +  E
Sbjct: 181 IAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHYVVICGYDAVRDEFEIRDPASSKIHE 240

Query: 239 KVTLKCLEEARKSFGTDEDLLLISLEK 265
           +++ KCLE ARKSFGTDEDLLLI+LE 
Sbjct: 241 RISSKCLENARKSFGTDEDLLLINLEN 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810693|ref|XP_002873230.1| hypothetical protein ARALYDRAFT_487393 [Arabidopsis lyrata subsp. lyrata] gi|297319067|gb|EFH49489.1| hypothetical protein ARALYDRAFT_487393 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/266 (64%), Positives = 204/266 (76%), Gaps = 2/266 (0%)

Query: 1   MWPIYFLLNKILRTEEEEDQVANVNG--ANMVECCPSDQSPSGRKCGDSILPSAHFVEVP 58
           MWP+ FLLNK+LR EE        +G   +   C   D   S  K  D+ LPS+  ++VP
Sbjct: 1   MWPLCFLLNKLLRVEERNQGRLEGHGDLTSPKYCQFDDPLVSDGKYRDAGLPSSSRIDVP 60

Query: 59  HINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYF 118
           H++QL SWDCGLACVLMVLR IGI +C ++ LAE C T SIWTVDLAYLLQKF V FSY+
Sbjct: 61  HVHQLASWDCGLACVLMVLRAIGIASCTLEDLAEICSTNSIWTVDLAYLLQKFCVEFSYY 120

Query: 119 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 178
           TIT GANPNYS+E FYKEQLP DLVRVD+LF+KA  +GI I+C ++S  EIS ++LSGNY
Sbjct: 121 TITFGANPNYSIEEFYKEQLPEDLVRVDLLFRKAHESGIIIQCRTVSIHEISCLLLSGNY 180

Query: 179 IAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKRE 238
           IAIALVDQ KLS SW+E+VIV G + S+S YTGHYI+ICGYDA  DEFEIRDPAS +  E
Sbjct: 181 IAIALVDQDKLSKSWLEEVIVAGLHSSNSCYTGHYIVICGYDAVRDEFEIRDPASSKIHE 240

Query: 239 KVTLKCLEEARKSFGTDEDLLLISLE 264
           +++ KCLE ARKSFGTDEDLLLI+LE
Sbjct: 241 RISSKCLENARKSFGTDEDLLLINLE 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566548|ref|XP_002524259.1| Protein C22orf13, putative [Ricinus communis] gi|223536536|gb|EEF38183.1| Protein C22orf13, putative [Ricinus communis]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/213 (77%), Positives = 184/213 (86%)

Query: 56  EVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGF 115
           EVPH++QL SWDCGLACVLM L TIGINNC+IQ LAE C TTSIWTVDLAYLLQKF+V F
Sbjct: 23  EVPHVSQLHSWDCGLACVLMALNTIGINNCSIQALAELCSTTSIWTVDLAYLLQKFSVRF 82

Query: 116 SYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILS 175
           SYFT+TLGANPNYS ETFYKEQLPTDLVRVD LFQKAR  GI I+C SI+  EISL ILS
Sbjct: 83  SYFTVTLGANPNYSAETFYKEQLPTDLVRVDRLFQKAREKGINIQCRSINEKEISLFILS 142

Query: 176 GNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR 235
           G YIA+ALVDQYKLS SW+EDVI+ G   S S YTGHY++ICGYDAN+DEFEIRDPAS R
Sbjct: 143 GKYIAVALVDQYKLSRSWVEDVILSGLKDSKSSYTGHYVVICGYDANADEFEIRDPASSR 202

Query: 236 KREKVTLKCLEEARKSFGTDEDLLLISLEKTEK 268
             E+++ KCLEEARKSFGTDEDLLLISLEK+ +
Sbjct: 203 ISERISSKCLEEARKSFGTDEDLLLISLEKSNE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2153674	274	GC1 "AT5G05930" [Arabidopsis t	0.985	0.963	0.639	2.9e-87
MGI|MGI:1916028	239	Gucd1 "guanylyl cyclase domain	0.802	0.899	0.337	5e-28
ZFIN|ZDB-GENE-060929-872	226	gucd1 "guanylyl cyclase domain	0.761	0.902	0.337	1.1e-25

TAIR|locus:2153674 GC1 "AT5G05930" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 170/266 (63%), Positives = 205/266 (77%)

Query:     1 MWPIYFLLNKILRTEEEEDQVANVNGANMVE--CCPSDQSPSGRKCGDSILPSAHFVEVP 58
             MWP+ FLLNK+LR EE    + + NG +     C   D   S  K  D+ LPS+  ++VP
Sbjct:     1 MWPLCFLLNKLLRVEERNQGILDGNGDSTFPKYCLFDDPLVSDGKYRDAGLPSSSHMDVP 60

Query:    59 HINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYF 118
             H++QL SWDCGLACVLMVLR  GI +C ++ LAE C T SIWTVDLAYLLQKF V FSY+
Sbjct:    61 HVHQLASWDCGLACVLMVLRASGIASCTLEDLAEICSTNSIWTVDLAYLLQKFCVEFSYY 120

Query:   119 TITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNY 178
             TIT GANPNYS+E FYKEQLP DLVRVD+LF+KA  +GI I+C S+S  EIS ++LSGNY
Sbjct:   121 TITFGANPNYSIEEFYKEQLPEDLVRVDLLFRKAHESGIIIQCRSVSIHEISCLLLSGNY 180

Query:   179 IAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKRE 238
             IAIALVDQ KLS SW+E+V+V G + S+S YTGHY++ICGYDA  DEFEIRDPAS +  E
Sbjct:   181 IAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHYVVICGYDAVRDEFEIRDPASSKIHE 240

Query:   239 KVTLKCLEEARKSFGTDEDLLLISLE 264
             +++ KCLE ARKSFGTDEDLLLI+LE
Sbjct:   241 RISSKCLENARKSFGTDEDLLLINLE 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916028 Gucd1 "guanylyl cyclase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 77/228 (33%), Positives = 124/228 (54%)

Query:    49 LPSAHFVE--VPHINQLFSWDCGLACVLMVLRTIG-INNCNIQG-LAEQCCTTSIWTVDL 104
             L    FV+  VP I QL+ WDCGLAC  MVLR +G +++   +  L E   T SIWT+DL
Sbjct:    12 LEPGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDGEFENALQELQLTRSIWTIDL 71

Query:   105 AYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSI 164
             AYL++ F V   + T TLG +  Y  ++FY++   T+  RV+ LF +A++  +++E  ++
Sbjct:    72 AYLMRHFGVRHRFCTQTLGVDKGYKNQSFYRKHFDTEETRVNQLFAQAKACKVQVEKCTV 131

Query:   165 SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVI-----VPG---FYGSDSGYTGHYILI 216
             S  +I + +  G ++AI LV+   L        +      P     +     Y GH+I++
Sbjct:   132 SVQDIQVHLAQG-HVAIVLVNSGVLHCDLCSSPVKYCCFTPSGHRCFCRTPDYQGHFIVL 190

Query:   217 CGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE 264
              GY+  +      +PA   +    ++   EEAR S+GTDED+L + L+
Sbjct:   191 RGYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFVYLD 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060929-872 gucd1 "guanylyl cyclase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 74/219 (33%), Positives = 115/219 (52%)

Query:    55 VEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCC----TTSIWTVDLAYLLQK 110
             + VP I QL+ WDCGLAC  MVL  +  N  + +     C     T S+WT+DLAYL+ K
Sbjct:     7 LNVPVIRQLYHWDCGLACSRMVLEYL--NPVSEEEFQRACMDLEFTESVWTIDLAYLMCK 64

Query:   111 FNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEIS 170
               V   + T TLG +  +  ++FYK+   T+  RV+ LF KA S G+ ++  S++  EI 
Sbjct:    65 LGVRHCFCTQTLGVDKGFRNQSFYKKHFDTEEDRVNELFLKAESKGVLVKKCSVTVQEIQ 124

Query:   171 LMILSGNYIAIALVDQYKLSHSWMEDVI-----VP-G--FYGSDSGYTGHYILICGYDAN 222
               +  G ++AI LV+   L        +     +P G   +     Y GH++++CG++  
Sbjct:   125 SHLEQG-HVAIVLVNAVLLVCELCSTPVKYCCFLPVGQKCFCRKPDYQGHFVVVCGFNRK 183

Query:   223 SDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLI 261
             +      +PA   +    +    EEAR+S+GTDED+L I
Sbjct:   184 TSSIFYNNPAYSDRVCCTSFSNFEEARRSYGTDEDILFI 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      268       268   0.00096  114 3  11 22  0.46    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  217 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.92u 0.13s 22.05t   Elapsed:  00:00:01
  Total cpu time:  21.92u 0.13s 22.05t   Elapsed:  00:00:01
  Start:  Fri May 10 03:40:53 2013   End:  Fri May 10 03:40:54 2013

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018367001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (283 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam09778	212	pfam09778, Guanylate_cyc_2, Guanylylate cyclase	1e-108

>gnl|CDD|220395 pfam09778, Guanylate_cyc_2, Guanylylate cyclase

 Score =  310 bits (795), Expect = e-108
 Identities = 116/214 (54%), Positives = 145/214 (67%), Gaps = 10/214 (4%)

Query: 57  VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCC----TTSIWTVDLAYLLQKFN 112
           VPHI Q + WDCGLACVLMVLRT+G ++   +   E CC    TTSIWT+DLAYLL+KF 
Sbjct: 1   VPHIQQRYHWDCGLACVLMVLRTLGRDSELTE-FEEICCELGFTTSIWTIDLAYLLKKFG 59

Query: 113 VGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLM 172
           V  SYFT TLGANPNYSVETFYK+    D VRV+ LFQKA SAGI +EC S+S  EI   
Sbjct: 60  VRHSYFTQTLGANPNYSVETFYKKHFDADEVRVNELFQKAESAGIDVECRSVSIQEIQEH 119

Query: 173 ILSGNYIAIALVDQYKLS----HSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEI 228
           +LSG+ +AI LV+   L            +    +   S Y GHY+++CGYD  +D+FE 
Sbjct: 120 LLSGH-VAILLVNASLLYCDLCKYCCFLPVGQKCFCRKSDYMGHYVVLCGYDKKTDKFEY 178

Query: 229 RDPASCRKREKVTLKCLEEARKSFGTDEDLLLIS 262
           R+PAS  +  +++ K LEEARKS+GTDED+LLI 
Sbjct: 179 RNPASSDRVCRISFKSLEEARKSYGTDEDILLIY 212

Members of this family of proteins catalyze the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF09778	212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	100.0
KOG4621	167	consensus Uncharacterized conserved protein [Funct	100.0
PF11814	207	DUF3335: Peptidase_C39 like family; InterPro: IPR0	99.92
PF03412	131	Peptidase_C39: Peptidase C39 family This is family	99.83
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.79
cd02424	129	Peptidase_C39E A sub-family of peptidase family C3	99.79
cd02549	141	Peptidase_C39A A sub-family of peptidase family C3	99.75
cd02418	136	Peptidase_C39B A sub-family of peptidase family C3	99.73
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.71
cd02420	125	Peptidase_C39D A sub-family of peptidase family C3	99.7
cd02419	127	Peptidase_C39C A sub-family of peptidase family C3	99.67
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	99.65
cd02423	129	Peptidase_C39G A sub-family of peptidase family C3	99.64
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.64
cd02259	122	Peptidase_C39_like Peptidase family C39 mostly con	99.63
cd02425	126	Peptidase_C39F A sub-family of peptidase family C3	99.62
cd02417	121	Peptidase_C39_likeA A sub-family of peptidase C39	99.52
cd02421	124	Peptidase_C39_likeD A sub-family of peptidase fami	99.45
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.45
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.42
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.34
PF12385	166	Peptidase_C70: Papain-like cysteine protease AvrRp	99.0
PF14399	317	Transpep_BrtH: NlpC/p60-like transpeptidase	98.83
COG3271	201	Predicted double-glycine peptidase [General functi	98.81
COG4990	195	Uncharacterized protein conserved in bacteria [Fun	98.61
PF05023	212	Phytochelatin: Phytochelatin synthase; InterPro: I	98.39
KOG0632	388	consensus Phytochelatin synthase [Inorganic ion tr	93.21
PF07910	218	Peptidase_C78: Peptidase family C78; InterPro: IPR	90.22
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	86.9

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate

Probab=100.00  E-value=1.8e-69  Score=479.10  Aligned_cols=204  Identities=54%  Similarity=0.888  Sum_probs=194.8

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhc----ccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCC----TTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVET  132 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~----ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~  132 (268)
                      ||||+|..+||||+||+.|||++.|+..++ ++++++|.    |+|||||||+|||++||+++.|||+|+|+||+|+.++
T Consensus         1 vphi~Q~~~WDCGlACv~MvL~~~~~~~~~-~~~~~~c~~~~~t~SiWTIDLayLL~~f~v~~~f~T~TlGvnp~y~~~~   79 (212)
T PF09778_consen    1 VPHIQQRYNWDCGLACVLMVLRYLGRNNFL-ANFEEICQEEGFTTSIWTIDLAYLLRRFGVRHSFYTVTLGVNPNYSVES   79 (212)
T ss_pred             CCceeeeccccccHHHHHHHHHHcCccchH-HHHHHHHHHccCCcceehhHHHHHHHHcCCCeeEecCccccCcCccccc
Confidence            799999999999999999999999999855 89999997    9999999999999999999999999999999999999


Q ss_pred             hhhhccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCccccccc----ccccccCCccCCCCC
Q 024378          133 FYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSW----MEDVIVPGFYGSDSG  208 (268)
Q Consensus       133 FY~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~----~~~~~~~~~~~~~~~  208 (268)
                      ||+++++.|+.||++||++|++.|+.++++++++++|.++|++|+ |||||||+++|+|+.    ..+.+.++.++++++
T Consensus        80 FY~~~~~~D~~RV~~lF~~A~~~gi~V~~rsvs~~ei~~hl~~g~-~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~  158 (212)
T PF09778_consen   80 FYKKNFDEDENRVNRLFQKAKAAGINVEKRSVSIQEIIEHLSSGG-PAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPD  158 (212)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHcCCceEEeeccHHHHHHHHhCCC-cEEEEEccccccChhhcccccccccccccCCCCC
Confidence            999999999999999999999999999999999999999999996 999999999999643    344556788999999


Q ss_pred             cCCcEEEEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEe
Q 024378          209 YTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLIS  262 (268)
Q Consensus       209 y~gHYVVL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~  262 (268)
                      |+||||||||||.++++|+|+|||++++.+++|++.||+||+||||||||||||
T Consensus       159 Y~GHYVVlcGyd~~~~~~~yrdPa~~~~~c~~s~~~ld~AR~s~GTDeDii~Iy  212 (212)
T PF09778_consen  159 YQGHYVVLCGYDAATKEFEYRDPASSDRVCRVSPEALDEARKSFGTDEDIIFIY  212 (212)
T ss_pred             ccEEEEEEEeecCCCCeEEEeCCccccceeecCHHHHHHHHhccCCCcceEEeC
Confidence            999999999999999999999999999999999999999999999999999997

>KOG4621 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-45  Score=299.93  Aligned_cols=158  Identities=51%  Similarity=0.841  Sum_probs=148.8

Q ss_pred             HHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCc
Q 024378          108 LQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQY  187 (268)
Q Consensus       108 l~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~  187 (268)
                      +++|+|.++|+|.|+|+||+|+.+.||+++|++|+.||+.||++|.+.|+.+++.++|+.+|+.+|++|+.+||||||+.
T Consensus         1 lhhF~V~~rfcT~T~GadkgYk~eeFYkehfd~detRVd~LFakA~ac~iiie~csVSi~dIqahLaqGnhiAIaLVdq~   80 (167)
T KOG4621|consen    1 LHHFCVEFRFCTITFGADKGYKIEEFYKEHFDEDETRVDLLFAKAHACGIIIECCSVSIHDIQAHLAQGNHIAIALVDQD   80 (167)
T ss_pred             CceeeEEEEEEEEEecCCCCcchHHHHHHhCChHHHHHHHHHHHhhhcceEEEEeeeeHHHHHHHHhcCCeEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccc-----C---CccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCC-ceeEeCHHHHHHHhhcCCCCceE
Q 024378          188 KLSHSWMEDVIV-----P---GFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR-KREKVTLKCLEEARKSFGTDEDL  258 (268)
Q Consensus       188 ~L~~~~~~~~~~-----~---~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~-~~~~is~~eFe~a~~s~GtD~di  258 (268)
                      +|+++|.++...     |   -.|++.+.|+||||||+|||+.+++|.|+|||+.+ .++++|.++||+||+||||||||
T Consensus        81 ~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd~a~~c~~~ndPA~adpg~c~~Sik~fEeARkSfGTDEDi  160 (167)
T KOG4621|consen   81 KLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYDAARDCFEINDPASADPGHCRISIKCFEEARKSFGTDEDI  160 (167)
T ss_pred             ceehHHHHhHHHHhccCCCCccccccCCcccccEEEEeccccccCeEEEcCcccCCCcceeehhhHHHHHHhccCCCcce
Confidence            999999655432     2   36788899999999999999999999999999986 89999999999999999999999


Q ss_pred             EEEecCC
Q 024378          259 LLISLEK  265 (268)
Q Consensus       259 i~i~~~~  265 (268)
                      +||+|++
T Consensus       161 Lfi~Ldn  167 (167)
T KOG4621|consen  161 LFINLDN  167 (167)
T ss_pred             EEEecCC
Confidence            9999984

>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised

Probab=99.92  E-value=9.1e-24  Score=186.75  Aligned_cols=172  Identities=20%  Similarity=0.357  Sum_probs=145.8

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhc---ccccc---------hhhHHHHHHHcCceeEEEEeecCC
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCC---TTSIW---------TVDLAYLLQKFNVGFSYFTITLGA  124 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~---ttsiw---------tidLa~ll~~~gv~~~~~T~tlG~  124 (268)
                      ||+++|+.++.||+|||.|.+++++... .+++-.|+-.   .|.|+         +.+||.++.+.|++++.+.++.| 
T Consensus         1 vPyy~QTT~FTCGPa~lmMAm~~l~~~~-~~~r~~EL~lWREATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~-   78 (207)
T PF11814_consen    1 VPYYRQTTEFTCGPACLMMAMAALDPEF-ELDRREELRLWREATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDG-   78 (207)
T ss_pred             CCccccCCCCCcHHHHHHHHHHhcCCcC-CCCHHHHHHHHHHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCC-
Confidence            7999999999999999999999999876 6776666653   34443         68899999999999999998776 


Q ss_pred             CCCCcchhhhhhccCchHHHHHHHH-----HHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCccccccccccccc
Q 024378          125 NPNYSVETFYKEQLPTDLVRVDMLF-----QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIV  199 (268)
Q Consensus       125 ~p~y~~~~FY~~~~~~D~~Rv~~lf-----~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~  199 (268)
                            -.|..++.+++++.|.++.     ++|++.|++++.+.+++++|.+.|++| ..+|+|++++.++..       
T Consensus        79 ------plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~~G-~~~lvLIS~y~~~g~-------  144 (207)
T PF11814_consen   79 ------PLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRPLSLADLRAALAAG-AIVLVLISTYRMDGK-------  144 (207)
T ss_pred             ------CceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHHCC-CEEEEEEeecccCCC-------
Confidence                  4688899999999888876     779999999999999999999999998 589999999888763       


Q ss_pred             CCccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCC---------ceeEeCHHHHHHHhhcCCCCc
Q 024378          200 PGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR---------KREKVTLKCLEEARKSFGTDE  256 (268)
Q Consensus       200 ~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~---------~~~~is~~eFe~a~~s~GtD~  256 (268)
                               ..+||||++|+|.  +.+|||||..+.         .+..++.++|++. .+||.+.
T Consensus       145 ---------k~PHWV~v~g~d~--~~vyihDP~~d~~~~~~~~d~~~lPi~~~~f~~m-~~~G~~~  198 (207)
T PF11814_consen  145 ---------KVPHWVVVTGVDD--DFVYIHDPDVDAERGESWVDCQHLPIPRADFDRM-ARFGKSK  198 (207)
T ss_pred             ---------CCCeEEEEEEecC--CEEEEeCCCCCcccCCCchhhccCCccHHHHHHH-Hhhcccc
Confidence                     5799999999997  599999999872         3456788888876 3566554

This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.

>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification

Probab=99.83  E-value=1.6e-20  Score=151.72  Aligned_cols=128  Identities=30%  Similarity=0.413  Sum_probs=84.9

Q ss_pred             cCceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhh
Q 024378           56 EVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK  135 (268)
Q Consensus        56 ~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~  135 (268)
                      ++|+|+|.+..|||+||++|+++++|++. +.++|++.+.+..            .           |.+          
T Consensus         1 ~~~~v~Q~~~~dcg~acl~~l~~~~g~~~-s~~~l~~~~~~~~------------~-----------g~s----------   46 (131)
T PF03412_consen    1 KYPVVKQSDSNDCGLACLAMLLKYYGIPV-SEEELRRQLGTSE------------E-----------GTS----------   46 (131)
T ss_dssp             -------SSTT-HHHHHHHHHHHHTT-----HHHHHCCTT-BT------------T-----------B------------
T ss_pred             CcCeEEeCCCCCHHHHHHHHHHHHhCCCc-hHHHHHHHhcCCc------------c-----------CCC----------
Confidence            58999999999999999999999999998 8888887664221            0           111          


Q ss_pred             hccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEE
Q 024378          136 EQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYIL  215 (268)
Q Consensus       136 ~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVV  215 (268)
                               +..|.+.|++.|+.+...+++.++|    .+.+.|+|+.++                        .|||||
T Consensus        47 ---------~~~L~~~~~~~gl~~~~~~~~~~~l----~~~~~P~I~~~~------------------------~~h~vV   89 (131)
T PF03412_consen   47 ---------LADLKRAARKYGLKAKAVKLNFEKL----KRLPLPAIAHLK------------------------DGHFVV   89 (131)
T ss_dssp             ---------CCCHHHHHHHTTEEEEEEE--GGGC----TCGGSSEEEEEC------------------------CCEEEE
T ss_pred             ---------HHHHHHHHHhcccceeeeecchhhh----hhccccEEEEec------------------------CcceEE
Confidence                     1234456666677766666776664    345689999986                        499999


Q ss_pred             EEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEec
Q 024378          216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISL  263 (268)
Q Consensus       216 L~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~  263 (268)
                      |.+++.  +.+.|.||+.|  ...++.++|++.|+  |   .+|++.-
T Consensus        90 i~~~~~--~~~~i~dP~~g--~~~~~~~~f~~~w~--G---~~l~~~~  128 (131)
T PF03412_consen   90 IYKIDD--GRVLIYDPKKG--KIKLSKEEFEEIWT--G---EVLLIKP  128 (131)
T ss_dssp             EEEECC--CEEEECCTTTC--EEEEEHHHHHHHEE--E---EEEEEEE
T ss_pred             EEeEcC--cEEEEEeCCCC--eEEEeHHHHHhhCC--C---EEEEEEe
Confidence            999965  69999999665  57899999999998  3   3566543

; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.79  E-value=4.8e-19  Score=180.24  Aligned_cols=121  Identities=21%  Similarity=0.343  Sum_probs=99.7

Q ss_pred             cCceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhh
Q 024378           56 EVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK  135 (268)
Q Consensus        56 ~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~  135 (268)
                      ++|++.|.++.|||+||++||++|||++. ++++|++.++.+.                       -|.+          
T Consensus         1 ~~~~i~Q~~~~dCg~acl~mi~~~~g~~~-~~~~lr~~~~~~~-----------------------~g~s----------   46 (710)
T TIGR03796         1 RTPTVLQMEAVECGAASLAMILAYYGRYV-PLEELREECGVSR-----------------------DGSK----------   46 (710)
T ss_pred             CCceEeecccccHHHHHHHHHHHHcCCCC-CHHHHHHHcCCCC-----------------------CCCC----------
Confidence            47999999999999999999999999998 9999998865331                       0222          


Q ss_pred             hccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEE
Q 024378          136 EQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYIL  215 (268)
Q Consensus       136 ~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVV  215 (268)
                               +..+.+.|++.|+.++..+.+.++|.    +.+.|||++|+                        .+||||
T Consensus        47 ---------~~~l~~~~~~~g~~~~~~~~~~~~l~----~~~lP~i~~~~------------------------~~h~vv   89 (710)
T TIGR03796        47 ---------ASNLLKAARSYGLEAKGFRKELDALA----ELPLPYIVFWN------------------------FNHFVV   89 (710)
T ss_pred             ---------HHHHHHHHHHCCCEeEEEecCHHHhc----cCCCCEEEEEc------------------------CCcEEE
Confidence                     46677788888888888888777654    34589999998                        489999


Q ss_pred             EEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhc
Q 024378          216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKS  251 (268)
Q Consensus       216 L~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s  251 (268)
                      |+++++  +.++|.||+.|+  .+++.+||++.|+.
T Consensus        90 l~~~~~--~~~~i~dP~~g~--~~~~~~e~~~~~~g  121 (710)
T TIGR03796        90 VEGFRG--GRVYLNDPALGP--RTVSLEEFDESFTG  121 (710)
T ss_pred             EEEEeC--CEEEEECCCCCC--EEccHHHHHhhCCC
Confidence            999977  589999999984  48999999999963

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd02424 Peptidase_C39E A sub-family of peptidase family C39

Probab=99.79  E-value=2.7e-18  Score=139.54  Aligned_cols=122  Identities=20%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             CceecccCcCcchHHHHHHHHHH-hCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRT-IGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYK  135 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y-~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~  135 (268)
                      +|.++|.+..|||+|||+|+++| ||++. ++++|+..++...                       -|            
T Consensus         1 ~~~~~q~~~~dcgla~l~~i~~~~~g~~~-~~~~l~~~~~~~~-----------------------~g------------   44 (129)
T cd02424           1 MKIIKQTDLNDCGIAVIQMLYNHYYKKKY-DLNELKIKANLKK-----------------------NG------------   44 (129)
T ss_pred             CceEEecCccchHHHHHHHHHHHhcCCCc-cHHHHHHHhCCCC-----------------------CC------------
Confidence            46799999999999999999999 89998 8888877644210                       01            


Q ss_pred             hccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEE
Q 024378          136 EQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYIL  215 (268)
Q Consensus       136 ~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVV  215 (268)
                             ..+..+.+.|++.|+.++..+++.++|.+.  ..+.|+|++-+                       ..+||||
T Consensus        45 -------~s~~~l~~~a~~~Gl~~k~~~~~~~~l~~~--~~p~P~i~~~~-----------------------~~~hfvV   92 (129)
T cd02424          45 -------LSIYDLENLAKKFGLETESYQGSFLEFLEL--KNKFIILLKSN-----------------------GLNHFVI   92 (129)
T ss_pred             -------ccHHHHHHHHHHcCCceeEEEcCHHHHhhc--cCCEEEEEecC-----------------------CCCeEEE
Confidence                   114667777888888888888888776543  23678887511                       1369999


Q ss_pred             EEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       216 L~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      +.+.++  +.++|.||+.+  ...++.++|++.|+
T Consensus        93 l~~~~~--~~v~I~DP~~g--~~~~s~~~f~~~ws  123 (129)
T cd02424          93 VKKIKK--NKFIVLDPKKG--KYKITYKEFEKIFN  123 (129)
T ss_pred             EEEEEC--CEEEEECCCCC--CEEeCHHHHHHHhc
Confidence            999976  47999999766  44899999999995

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family, which contains Colicin V perocessing peptidase.

>cd02549 Peptidase_C39A A sub-family of peptidase family C39

Probab=99.75  E-value=4.8e-17  Score=132.23  Aligned_cols=133  Identities=23%  Similarity=0.297  Sum_probs=87.7

Q ss_pred             cCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchH
Q 024378           63 LFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDL  142 (268)
Q Consensus        63 ~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~  142 (268)
                      ....+||+|||+||++|+|.+. +..++......                  ..+.+...|.+                 
T Consensus         2 ~~~~~C~~~slamvl~~~g~~~-~~~~l~~~~~~------------------~~~~~~~~g~~-----------------   45 (141)
T cd02549           2 QLENGCGPTSLAMVLSYLGVKV-TKPQLAAEGNT------------------YDFAKDGYGTY-----------------   45 (141)
T ss_pred             CCCCccHHHHHHHHHHhcCCCC-CHHHHHhhccc------------------cccCCCCCCcC-----------------
Confidence            3467899999999999999997 76666632000                  00000001111                 


Q ss_pred             HHHHHHHHH-HHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC
Q 024378          143 VRVDMLFQK-ARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA  221 (268)
Q Consensus       143 ~Rv~~lf~~-A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~  221 (268)
                        ...+.+. |++.|+.++..+.+.. +.++++++ .|+|++++....                 ....||||||.|||.
T Consensus        46 --~~~l~~~~a~~~G~~~~~~~~~~~-~~~~l~~~-~Pvi~~~~~~~~-----------------~~~~gH~vVv~g~~~  104 (141)
T cd02549          46 --PKPIVSAAARKYGLVVRPLTGLLA-LLRQLAAG-HPVIVSVNLGVS-----------------ITPSGHAMVVIGYDR  104 (141)
T ss_pred             --HHHHHHHHHhhCCCcEEECCCHHH-HHHHHHCC-CeEEEEEecCcc-----------------cCCCCeEEEEEEEcC
Confidence              1334444 6666666555544433 55666666 699999984111                 123689999999992


Q ss_pred             CCCEEEEecCCCCCceeEeCHHHHHHHhhcCCC
Q 024378          222 NSDEFEIRDPASCRKREKVTLKCLEEARKSFGT  254 (268)
Q Consensus       222 ~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~Gt  254 (268)
                       .+.++|+||+.+. ...++.++|+++|++.|.
T Consensus       105 -~~~~~i~DP~~~~-~~~~~~~~f~~~w~~~~~  135 (141)
T cd02549         105 -KGNVYVNDPGGGR-RLVVSFDEFEKAWKRMGG  135 (141)
T ss_pred             -CCCEEEECCCCCc-CEEEeHHHHHHHHHHcCC
Confidence             2579999999874 568999999999999883

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are

>cd02418 Peptidase_C39B A sub-family of peptidase family C39

Probab=99.73  E-value=6.4e-17  Score=130.74  Aligned_cols=134  Identities=22%  Similarity=0.250  Sum_probs=98.8

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKE  136 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~  136 (268)
                      .|.++|.+..+||+||++|+++++|++. +.+.++..+..+.                       -|.+           
T Consensus         1 ~~~~~q~~~~~~gl~~l~~~~~~~g~~~-~~~~l~~~~~~~~-----------------------~~~~-----------   45 (136)
T cd02418           1 YPYVLQVDEMDCGAACLAMIAKYYGKNY-SLAKLRELAGTDR-----------------------EGTS-----------   45 (136)
T ss_pred             CCeEEecCcccHHHHHHHHHHHHhCCCC-CHHHHHHHcCCCC-----------------------CCcC-----------
Confidence            3789999999999999999999999998 8787776543210                       0111           


Q ss_pred             ccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEE
Q 024378          137 QLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILI  216 (268)
Q Consensus       137 ~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL  216 (268)
                              ...+.+.|++.|+.++...++.+++ . +.+.+.|+|++++..                    ...|||+||
T Consensus        46 --------~~~l~~~a~~~Gl~~~~~~~~~~~~-~-l~~~~~P~I~~~~~~--------------------~~~~~~~Vl   95 (136)
T cd02418          46 --------LLGLVKAAEKLGFETRAVKADMDLF-E-LKDIPLPFIAHVIKE--------------------WKLNHYVVV   95 (136)
T ss_pred             --------HHHHHHHHHHCCCeeEEEEcccchh-h-HhcCCCCEEEEEccC--------------------CCCCeEEEE
Confidence                    3456677778888877777777621 1 234458999997631                    125999999


Q ss_pred             EEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecC
Q 024378          217 CGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE  264 (268)
Q Consensus       217 ~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~  264 (268)
                      .|++.  +.++|.||+.+  ...++.++|++.|.  |   .+++|+..
T Consensus        96 ~~~~~--~~~~i~dp~~~--~~~~~~~ef~~~w~--g---~~l~~~~~  134 (136)
T cd02418          96 YKIKK--KKILIADPAVG--ITKISKEEFEKEWT--G---VALFLEPT  134 (136)
T ss_pred             EEEcC--CEEEEECCCCC--CEEeeHHHHHhhCe--E---EEEEEecC
Confidence            99986  47999999554  55899999999997  3   57777654

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.71  E-value=6.6e-17  Score=164.73  Aligned_cols=121  Identities=21%  Similarity=0.213  Sum_probs=93.0

Q ss_pred             ccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCch
Q 024378           62 QLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD  141 (268)
Q Consensus        62 Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D  141 (268)
                      |.++.|||+||++||++|||++. ++++|++.++.++            .           |.+                
T Consensus         1 Q~~~~dCg~~cl~~i~~~~g~~~-~~~~lr~~~~~~~------------~-----------g~s----------------   40 (708)
T TIGR01193         1 QVDEKDCGIAALSMILKKYGTEY-SLAKLRQLAKTDL------------E-----------GTT----------------   40 (708)
T ss_pred             CCCccchHHHHHHHHHHHcCCCC-CHHHHHHHhCCCC------------C-----------CCC----------------
Confidence            88899999999999999999999 9999998875431            0           222                


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC
Q 024378          142 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA  221 (268)
Q Consensus       142 ~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~  221 (268)
                         +..+.+.|++.|+.++..+.+.++|.  +.+.+.|||++|-.+                    +..+|||||+++++
T Consensus        41 ---~~~l~~~~~~~g~~~~~~~~~~~~l~--~~~~~~P~I~~~~~~--------------------~~~~H~vVl~~~~~   95 (708)
T TIGR01193        41 ---VLGLVKAAEYLNFEAKAIQADMSLFE--DKNLPLPFIAHVIKN--------------------GKLPHYYVVYGVTK   95 (708)
T ss_pred             ---HHHHHHHHHHCCCEEEEEecCHHHhc--cccCCCCEEEEEccC--------------------CCCCcEEEEEEEeC
Confidence               46677777888888878777776432  223457999998210                    01479999999986


Q ss_pred             CCCEEEEecC--CCCCceeEeCHHHHHHHhhc
Q 024378          222 NSDEFEIRDP--ASCRKREKVTLKCLEEARKS  251 (268)
Q Consensus       222 ~~~~f~I~DP--a~g~~~~~is~~eFe~a~~s  251 (268)
                        ++++|.||  +.|+  .+++.+||++.|+.
T Consensus        96 --~~~~i~dP~~~~g~--~~~~~~ef~~~~~g  123 (708)
T TIGR01193        96 --NHLIIADPDPTVGI--TKISKEDFYEEWTG  123 (708)
T ss_pred             --CEEEEEcCCcccCC--EEecHHHHHhhCCC
Confidence              58999999  7774  48999999999964

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd02420 Peptidase_C39D A sub-family of peptidase family C39

Probab=99.70  E-value=2.5e-16  Score=126.21  Aligned_cols=118  Identities=21%  Similarity=0.353  Sum_probs=93.8

Q ss_pred             ceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhc
Q 024378           58 PHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQ  137 (268)
Q Consensus        58 P~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~  137 (268)
                      |++.|....|||+||++|++++||... +.+.|+...+...                       -|              
T Consensus         2 ~~~~q~~~~~~gl~~l~~i~~~~g~~~-~~~~l~~~~~~~~-----------------------~~--------------   43 (125)
T cd02420           2 PTVLQMEATECGAASLAIILAYYGRYV-PLSELRIACGVSR-----------------------DG--------------   43 (125)
T ss_pred             CeeeeCcccCHHHHHHHHHHHHcCCCC-CHHHHHHHcCCCC-----------------------CC--------------
Confidence            678888889999999999999999998 8888876543210                       01              


Q ss_pred             cCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEE
Q 024378          138 LPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILIC  217 (268)
Q Consensus       138 ~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~  217 (268)
                           .....+.+.|++.|+.++..+++.++|.    +.+.|+|++++                        .|||+||.
T Consensus        44 -----~~~~~l~~~a~~~Gl~~~~~~~~~~~L~----~~~lP~I~~~~------------------------~g~~~Vl~   90 (125)
T cd02420          44 -----SNASNLLKAAREYGLTAKGYKKDLEALR----EVSLPAIVFWN------------------------FNHFLVVE   90 (125)
T ss_pred             -----CCHHHHHHHHHHcCcccceEecCHHHHh----cCCCCEEEEeC------------------------CCEEEEEE
Confidence                 1135677888888988888888887754    44589999887                        49999999


Q ss_pred             EEeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          218 GYDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       218 Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      +++.  +.++|.||+.+  ...++.++|++.|+
T Consensus        91 ~~~~--~~~~i~dp~~~--~~~~s~~el~~~~~  119 (125)
T cd02420          91 GFDK--RKVFLNDPATG--RRTVSLEEFDQSFT  119 (125)
T ss_pred             EEeC--CEEEEECCCcC--ceeecHHHHHhhCC
Confidence            9986  48999999875  45899999999996

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>cd02419 Peptidase_C39C A sub-family of peptidase family C39

Probab=99.67  E-value=1.1e-15  Score=122.47  Aligned_cols=119  Identities=20%  Similarity=0.274  Sum_probs=93.9

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKE  136 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~  136 (268)
                      +|.+.|....|||++|+.|++++||+.. +.+.++......                                       
T Consensus         1 ~~~~~q~~~~~~~l~~l~~~~~~~g~~~-~~~~l~~~~~~~---------------------------------------   40 (127)
T cd02419           1 LPVILQTEAAECGLACLAMIASYHGHHV-DLASLRQRFPVS---------------------------------------   40 (127)
T ss_pred             CCeEeeCccccHHHHHHHHHHHHcCCCC-CHHHHHHHcCCC---------------------------------------
Confidence            3678899999999999999999999998 777777543211                                       


Q ss_pred             ccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEE
Q 024378          137 QLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILI  216 (268)
Q Consensus       137 ~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL  216 (268)
                         .+......+.+.|++.|+.++..+++.++|..    .+.|+|++++                        .|||+||
T Consensus        41 ---~~~~~~~~l~~~a~~~Gl~~~~~~~~~~~l~~----~~lP~i~~~~------------------------~g~~~Vl   89 (127)
T cd02419          41 ---LKGATLADLIDIAQQLGLSTRALRLDLEELGQ----LKLPCILHWD------------------------MNHFVVL   89 (127)
T ss_pred             ---CCCcCHHHHHHHHHHCCCceeEEEccHHHHhh----CCCCEEEEEC------------------------CCEEEEE
Confidence               00112456778888888888888888877544    3589999876                        4999999


Q ss_pred             EEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          217 CGYDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       217 ~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      .+++.  +.+.|.||+.+  ...++.++|++.|+
T Consensus        90 ~~~~~--~~~~i~dp~~~--~~~~~~~el~~~~~  119 (127)
T cd02419          90 KKVSR--RRIVIHDPALG--KRKLSLEEASRHFT  119 (127)
T ss_pred             EEEcC--CEEEEECCccC--CEEEcHHHHHhhCC
Confidence            99965  58999999876  45899999999997

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=99.65  E-value=9.8e-16  Score=122.71  Aligned_cols=139  Identities=29%  Similarity=0.349  Sum_probs=69.1

Q ss_pred             ccCceecc--cCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchh
Q 024378           55 VEVPHINQ--LFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVET  132 (268)
Q Consensus        55 ~~vP~i~Q--~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~  132 (268)
                      ++||.+.|  .....||+||++|||+|+|+.. +..+|.+...+..-                        -|++   ..
T Consensus         1 l~vp~~~Q~~~~~~~Cg~as~~mvl~~~g~~~-~~~~l~~~~~~~~~------------------------~~~~---~~   52 (144)
T PF13529_consen    1 LNVPYYSQYDETSYGCGPASAAMVLNYYGKNI-SQEDLADEAGTNPD------------------------GDPN---TG   52 (144)
T ss_dssp             -TS-----TTT-TT-HHHHHHHHHHHHTT-----HHHHHHHS-EE-E--------------------------TT---TS
T ss_pred             CCCCcEEeCCCCCCcCHHHHHHHHHHHcCCCC-CHHHHHHHhhhccC------------------------CCCC---cc
Confidence            47999999  7777899999999999999976 66677666543310                        0000   00


Q ss_pred             hhhhcc--CchHHHHHHHHHHHHHcCCe-eeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCc
Q 024378          133 FYKEQL--PTDLVRVDMLFQKARSAGIK-IECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGY  209 (268)
Q Consensus       133 FY~~~~--~~D~~Rv~~lf~~A~~~Gi~-~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y  209 (268)
                      |..+..  .........+.+.+++.|+. ......+.++|.+.|.+| .|+|+.++.+.....   ..      .....+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~G-~Pvi~~~~~~~~~~~---~~------~~~~~~  122 (144)
T PF13529_consen   53 FVGNPYYDSGYGTSPDDLARYLEKYGYKATDTSDASFDDIKQEIDAG-RPVIVSVNSGWRPPN---GD------GYDGTY  122 (144)
T ss_dssp             EEB-SSTS-B----HHHHHHHHHHH-TTEEE-TTS-HHHHHHHHHTT---EEEEEETTSS--T---TE------EEEE-T
T ss_pred             cccCccccCCCccccHHHHHHHHHcCcceeeccCCcHHHHHHHHHCC-CcEEEEEEcccccCC---CC------CcCCCc
Confidence            000000  00011234445667777763 334566889999999988 599999974321110   00      000124


Q ss_pred             CCcEEEEEEEeCCCCEEEEecCC
Q 024378          210 TGHYILICGYDANSDEFEIRDPA  232 (268)
Q Consensus       210 ~gHYVVL~Gyd~~~~~f~I~DPa  232 (268)
                      .||||||.||+.++ .|+|+||+
T Consensus       123 ~~H~vvi~Gy~~~~-~~~v~DP~  144 (144)
T PF13529_consen  123 GGHYVVIIGYDEDG-YVYVNDPW  144 (144)
T ss_dssp             TEEEEEEEEE-SSE--EEEE-TT
T ss_pred             CCEEEEEEEEeCCC-EEEEeCCC
Confidence            69999999999854 59999996

>cd02423 Peptidase_C39G A sub-family of peptidase family C39

Probab=99.64  E-value=4.2e-15  Score=119.04  Aligned_cols=119  Identities=25%  Similarity=0.330  Sum_probs=91.8

Q ss_pred             ecccCcCcchHHHHHHHHHHhC-CCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhcc
Q 024378           60 INQLFSWDCGLACVLMVLRTIG-INNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQL  138 (268)
Q Consensus        60 i~Q~~~~DCGlACl~MVL~y~g-~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~  138 (268)
                      +.|.+.++||+||++|++++|| ++. +...+++.+....                       -|               
T Consensus         4 ~~q~~~~~~~l~~l~~~~~~~g~~~~-~~~~l~~~~~~~~-----------------------~~---------------   44 (129)
T cd02423           4 VRQSYDFSCGPAALATLLRYYGGINI-TEQEVLKLMLIRS-----------------------EG---------------   44 (129)
T ss_pred             eecCCCCChHHHHHHHHHHhcCCCCC-CHHHHHHHhCccc-----------------------CC---------------
Confidence            6888999999999999999999 887 7777776543110                       01               


Q ss_pred             CchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEE
Q 024378          139 PTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICG  218 (268)
Q Consensus       139 ~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~G  218 (268)
                          .....+.+.|++.|+.++..+++.++|..    .+.|+|++++.                     +..+|||||.+
T Consensus        45 ----~s~~~l~~~a~~~Gl~~~~~~~~~~~L~~----~~lP~i~~~~~---------------------~~~~~~vvl~~   95 (129)
T cd02423          45 ----FSMLDLKRYAEALGLKANGYRLNLDKLNA----LQIPVIVLVNN---------------------GGYGHFVVIKG   95 (129)
T ss_pred             ----cCHHHHHHHHHHCCCcceEEEcCHHHHhh----CCCCEEEEEec---------------------CCCceEEEEEE
Confidence                11355667788888888888888877553    35899998742                     12479999999


Q ss_pred             EeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          219 YDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       219 yd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      ++.  +.+.|.||+.++  ..++.++|++.|+
T Consensus        96 ~~~--~~~~i~dp~~~~--~~~s~~el~~~w~  123 (129)
T cd02423          96 IDG--DRVLVGDPALGN--ISMSREEFERIWT  123 (129)
T ss_pred             EeC--CEEEEECCCCCC--cccCHHHHHHHhc
Confidence            986  589999999874  5899999999996

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.64  E-value=8.9e-16  Score=157.48  Aligned_cols=119  Identities=24%  Similarity=0.334  Sum_probs=99.7

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKE  136 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~  136 (268)
                      +|.+.|.+..|||+||++|+++|||++. +++.+++.++++.                 .      |             
T Consensus         2 ~~~~~q~~~~dcgla~l~mia~~~g~~~-~~~~lr~~~~~~~-----------------~------g-------------   44 (709)
T COG2274           2 MPIVLQQSANDCGLACLAMIANYHGKKI-SLNELRELVGLSR-----------------N------G-------------   44 (709)
T ss_pred             CcccccCCccchHHHHHHHHHHHhCCCC-CHHHHHHHcCCCC-----------------C------C-------------
Confidence            6889999999999999999999999998 8899998876431                 0      1             


Q ss_pred             ccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEE
Q 024378          137 QLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILI  216 (268)
Q Consensus       137 ~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL  216 (268)
                            .....+.+.|++.|+.++..+.+.+++.    +-+.|+|++|+.                        +||||+
T Consensus        45 ------~sl~~l~~~a~~lGl~~~~~~~~~~~l~----~~~lP~ii~~~~------------------------~h~vVl   90 (709)
T COG2274          45 ------LSLLELKQAAEKLGLSARAVKLSLEELK----QLPLPAIIHWNG------------------------NHFVVL   90 (709)
T ss_pred             ------CChHHHHHHHHHcCCccccccCCHHHhc----ccCCCEEEEEcC------------------------CcEEEE
Confidence                  1146677889999999888888866654    445799999993                        799999


Q ss_pred             EEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          217 CGYDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       217 ~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      .|+++  +++++.||+.|  ..+++.+||++.|+
T Consensus        91 ~~~~~--~~~~v~dp~~g--~~~l~~~e~~~~~t  120 (709)
T COG2274          91 YKIDK--NKVVVLDPAKG--IRRLSLEEFEKLWT  120 (709)
T ss_pred             EEecC--CeEEEEeCCCC--cEEcCHHHHHHhhh
Confidence            99987  48999999766  56999999999999

>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria

Probab=99.63  E-value=6.8e-15  Score=116.33  Aligned_cols=116  Identities=25%  Similarity=0.332  Sum_probs=86.9

Q ss_pred             ccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCch
Q 024378           62 QLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD  141 (268)
Q Consensus        62 Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D  141 (268)
                      |.+..+||++|++||++++|.+. +.+.+++......                       -|                  
T Consensus         1 ~~~~~~~gl~~l~~i~~~~g~~~-~~~~l~~~~~~~~-----------------------~~------------------   38 (122)
T cd02259           1 GGGPLDCGLACLQMLLRYFGIPV-RRDVLLNAQQRRQ-----------------------QG------------------   38 (122)
T ss_pred             CCCccchHHHHHHHHHHHcCCCC-CHHHHHHHHhhcc-----------------------CC------------------
Confidence            55667999999999999999998 7777765432110                       01                  


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC
Q 024378          142 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA  221 (268)
Q Consensus       142 ~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~  221 (268)
                       .....+.+.|++.|+.++..+.+.++|.    +.+.|+|+++.                        .|||+||.|++.
T Consensus        39 -~~~~~l~~~a~~~gl~~~~~~~~~~~l~----~~~~P~i~~~~------------------------~~~~~Vl~~~~~   89 (122)
T cd02259          39 -LSLADLVSLANKLGLTAQGVKLPLAALS----RLQLPALLLWK------------------------QGHFVILYGADK   89 (122)
T ss_pred             -CCHHHHHHHHHHcCCeeeEEEcCHHHhc----cCCCCEEEEcC------------------------CCcEEEEEEEcC
Confidence             1134566778888888888888776643    44689998754                        499999999985


Q ss_pred             CCCEEEEecCCCCCceeEeCHHHHHHHhhc
Q 024378          222 NSDEFEIRDPASCRKREKVTLKCLEEARKS  251 (268)
Q Consensus       222 ~~~~f~I~DPa~g~~~~~is~~eFe~a~~s  251 (268)
                        +.++|.||+. .....++.++|++.|+.
T Consensus        90 --~~~~i~dp~~-~~~~~~~~~~l~~~w~g  116 (122)
T cd02259          90 --GQVLIADPLE-EGPVTLSESELEERWTG  116 (122)
T ss_pred             --CEEEEECCcc-cCCEEeCHHHHHhhCCC
Confidence              5899999963 34568999999999973

The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in all sub-families.

>cd02425 Peptidase_C39F A sub-family of peptidase family C39

Probab=99.62  E-value=7.5e-15  Score=117.15  Aligned_cols=119  Identities=24%  Similarity=0.300  Sum_probs=93.3

Q ss_pred             CceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhh
Q 024378           57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKE  136 (268)
Q Consensus        57 vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~  136 (268)
                      +|.+.|....+||++|+.|+++++|.+. +.+.+++.+....                       -|             
T Consensus         1 ~~~~~q~~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~-----------------------~~-------------   43 (126)
T cd02425           1 VKPILQNNQTECGLACYAMILNYFGYKV-SLNELREKYELGR-----------------------DG-------------   43 (126)
T ss_pred             CCeEeecccccHHHHHHHHHHHHhCCCC-CHHHHHHhccCCC-----------------------CC-------------
Confidence            5789999999999999999999999998 7777776532110                       01             


Q ss_pred             ccCchHHHHHHHHHHHHHcCCeeeeeccCH-HHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEE
Q 024378          137 QLPTDLVRVDMLFQKARSAGIKIECGSISG-VEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYIL  215 (268)
Q Consensus       137 ~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~-~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVV  215 (268)
                            .....+.+.|++.|+.++...++. +.|.    ..+.|+|++++                        .|||+|
T Consensus        44 ------~~~~~l~~~a~~~gl~~~~~~~~~~~~l~----~~~lP~I~~~~------------------------~~~~~V   89 (126)
T cd02425          44 ------LSLSYLKQLLEEYGFKCKVYKISFKKNLY----PLKLPVIIFWN------------------------NNHFVV   89 (126)
T ss_pred             ------cCHHHHHHHHHHCCCcceEEEEchHHHHh----hCCCCEEEEEc------------------------CCcEEE
Confidence                  113556677888888888888887 6544    44589999876                        389999


Q ss_pred             EEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          216 ICGYDANSDEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       216 L~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      |.+++.  +.++|.||..++  ..++.++|++.|+
T Consensus        90 l~~~~~--~~~~i~dp~~~~--~~~~~~~l~~~~~  120 (126)
T cd02425          90 LEKIKK--NKVTIVDPAIGR--IKISIDEFLENFS  120 (126)
T ss_pred             EEEEEC--CEEEEEcCCCCC--EEECHHHHHhhCC
Confidence            999976  479999999873  4899999999996

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases

Probab=99.52  E-value=1.5e-13  Score=109.20  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=87.2

Q ss_pred             cCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHH
Q 024378           65 SWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVR  144 (268)
Q Consensus        65 ~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~R  144 (268)
                      ..|||++|+.|++++||.+. +.+.|+..+....                       -|                   ..
T Consensus         4 ~~~~~l~~l~~i~~~~g~~~-~~~~l~~~~~~~~-----------------------~~-------------------~~   40 (121)
T cd02417           4 KPDSGLLALVLLARYHGIAA-DPEQLRHEFGLAG-----------------------EP-------------------FN   40 (121)
T ss_pred             ccccHHHHHHHHHHHcCCCC-CHHHHHHHhcCCC-----------------------CC-------------------CC
Confidence            34899999999999999998 8888886643210                       01                   11


Q ss_pred             HHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCC
Q 024378          145 VDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD  224 (268)
Q Consensus       145 v~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~  224 (268)
                      ...+.+.|++.|+.++..+++.++|.    +.+.|+|++++                        .|||+||.+++.  +
T Consensus        41 ~~~l~~~a~~~Gl~~~~~~~~~~~l~----~~~lP~I~~~~------------------------~g~~~Vl~~~~~--~   90 (121)
T cd02417          41 STELLLAAKSLGLKAKAVRQPVERLA----RLPLPALAWDD------------------------DGGHFILAKLDG--Q   90 (121)
T ss_pred             HHHHHHHHHHcCCeeEEEecCHHHhc----cCCCCEEEEcc------------------------CCCEEEEEEEcC--C
Confidence            35566778888888888888887754    44689999876                        389999999985  4


Q ss_pred             EEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          225 EFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       225 ~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      .++|.||+.+ ....++.++|++.|+
T Consensus        91 ~~~i~dp~~~-~~~~~~~~el~~~~~  115 (121)
T cd02417          91 KYLIQDPISQ-RPEVLSREEFEARWS  115 (121)
T ss_pred             CEEEECCCcC-CCeecCHHHHHhhcC
Confidence            7999999876 355899999999996

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this

>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39

Probab=99.45  E-value=1e-12  Score=105.04  Aligned_cols=119  Identities=21%  Similarity=0.233  Sum_probs=89.4

Q ss_pred             CcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHHH
Q 024378           66 WDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRV  145 (268)
Q Consensus        66 ~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~Rv  145 (268)
                      .|||++|++|+++|||+.. +.+.++...+...                                          +....
T Consensus         5 ~~~~l~~l~~i~~~~g~~~-~~~~l~~~~~~~~------------------------------------------~~~~~   41 (124)
T cd02421           5 DDPLLDCLVLLARQFGKPA-SRDSLVAGLPLDD------------------------------------------GRLSP   41 (124)
T ss_pred             CChHHHHHHHHHHHhCCCC-CHHHHHhcCCCCC------------------------------------------CCcCH
Confidence            3799999999999999998 7777775432110                                          01114


Q ss_pred             HHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCCE
Q 024378          146 DMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE  225 (268)
Q Consensus       146 ~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~  225 (268)
                      ..+.+.|+..|+.++..+++.+.|.    +.+.|+|++++                        .|||+||.+++.  +.
T Consensus        42 ~~l~~~a~~~Gl~~~~~~~~~~~l~----~~~lP~i~~~~------------------------~g~~~Vl~~~~~--~~   91 (124)
T cd02421          42 ALFPRAAARAGLSARVVRRPLDAIP----TLLLPAILLLK------------------------NGRACVLLGVDD--GH   91 (124)
T ss_pred             HHHHHHHHHCCCcceeeeCCHHHCC----cccCCEEEEEc------------------------CCCEEEEEEecC--Ce
Confidence            5677888899998888888887643    44689999877                        389999999986  57


Q ss_pred             EEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEe
Q 024378          226 FEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLIS  262 (268)
Q Consensus       226 f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~  262 (268)
                      +.|.||........++.++|++.|+  |   .+|++.
T Consensus        92 ~~i~dp~~~~~~~~~~~~el~~~~~--g---~~ll~~  123 (124)
T cd02421          92 ARILDPESGGGEVEISLEELEEEYS--G---YAIFVK  123 (124)
T ss_pred             EEEEccCCCCCcEEEcHHHHHhhCC--e---EEEEEe
Confidence            9999997222345899999999996  3   455553

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.45  E-value=6.1e-13  Score=135.48  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHHHHHHH
Q 024378           70 LACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDMLF  149 (268)
Q Consensus        70 lACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~Rv~~lf  149 (268)
                      +||++||++|||++. ++.+|++.++.+.                       -|.+                   +.++.
T Consensus         2 laclami~~~~g~~~-~l~~lr~~~~~~~-----------------------~g~s-------------------l~~l~   38 (694)
T TIGR03375         2 LDCLLLLARHYGRPV-SREALVAGLPLED-----------------------GRLT-------------------PELLP   38 (694)
T ss_pred             HHHHHHHHHHcCCCC-CHHHHHhhCCCCC-----------------------CCCC-------------------HHHHH
Confidence            799999999999998 8899998865321                       0222                   46677


Q ss_pred             HHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCCE-EEE
Q 024378          150 QKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDE-FEI  228 (268)
Q Consensus       150 ~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~-f~I  228 (268)
                      +.|++.|+.++..+++.+++.    +.+.|+|++|+                        .+||||+++++++  . ++|
T Consensus        39 ~~~~~~g~~~~~~~~~~~~l~----~~~~P~i~~~~------------------------~~h~vvl~~~~~~--~~~~i   88 (694)
T TIGR03375        39 RAARRAGLSARLVKRSLDDIS----PLLLPAILLLK------------------------DGRACVLLGIDED--GKARV   88 (694)
T ss_pred             HHHHHCCCEEEEecCCHhhcC----cCCCCEEEEEc------------------------CCcEEEEEEEcCC--CcEEE
Confidence            777777777777777766643    44589999998                        3899999999874  5 999


Q ss_pred             ecCCCCCceeEeCHHHHHHHhhc
Q 024378          229 RDPASCRKREKVTLKCLEEARKS  251 (268)
Q Consensus       229 ~DPa~g~~~~~is~~eFe~a~~s  251 (268)
                      .||+.|....+++.+||++.|+.
T Consensus        89 ~DP~~g~~~~~~~~~e~~~~~~g  111 (694)
T TIGR03375        89 LLPETGDGEQELSLDALEALYSG  111 (694)
T ss_pred             EccCCCCCceEecHHHHHhhcCC
Confidence            99999821348999999999963

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.42  E-value=1.1e-12  Score=133.66  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHHHHHH
Q 024378           69 GLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDML  148 (268)
Q Consensus        69 GlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~Rv~~l  148 (268)
                      |+||++||++|||++. ++++|++.++...                       -|.+                   +.++
T Consensus         1 g~acl~~i~~~~g~~~-~~~~lr~~~~~~~-----------------------~g~~-------------------~~~l   37 (694)
T TIGR01846         1 GLEALSLLAQVHNIAV-TPSQLRHMLGHAG-----------------------ASLD-------------------DLEI   37 (694)
T ss_pred             CHHHHHHHHHHcCCCC-CHHHHHHhcCCCC-----------------------CCCC-------------------HHHH
Confidence            8999999999999999 9999998875331                       0212                   4566


Q ss_pred             HHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCCEEEE
Q 024378          149 FQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEI  228 (268)
Q Consensus       149 f~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I  228 (268)
                      .+.|++.|+.++..+.+.+++.    +.+.|+|++|+                         +|||||+++++  ++++|
T Consensus        38 ~~~~~~~G~~~~~~~~~~~~l~----~~~lP~i~~~~-------------------------~~~vvl~~~~~--~~~~i   86 (694)
T TIGR01846        38 LLAAKQLGLKAKAVKVSIGRLN----KLPLPALIDGE-------------------------GGWFVLGKLTA--NGVTI   86 (694)
T ss_pred             HHHHHHCCCEEEEEeCCHHHcc----CCCCCEEEEEC-------------------------CcEEEEEEEcC--CEEEE
Confidence            6777788888777777776643    44589999985                         58999999987  58999


Q ss_pred             ecCCCCCceeEeCHHHHHHHhhc
Q 024378          229 RDPASCRKREKVTLKCLEEARKS  251 (268)
Q Consensus       229 ~DPa~g~~~~~is~~eFe~a~~s  251 (268)
                      .||+.| ...+++.+||++.|+.
T Consensus        87 ~Dp~~g-~~~~i~~~e~~~~~~g  108 (694)
T TIGR01846        87 YDPPGD-APEVLSREVLEALWSG  108 (694)
T ss_pred             EcCCCC-CceeeCHHHHHhhCCC
Confidence            999998 3568999999999963

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.34  E-value=6.9e-12  Score=127.64  Aligned_cols=102  Identities=21%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHHHHHHH
Q 024378           69 GLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLVRVDML  148 (268)
Q Consensus        69 GlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~Rv~~l  148 (268)
                      -+||++||++|||++. ++.+||+.+.+ +                                              +..+
T Consensus         4 ~~~~l~~i~~~~~~~~-~~~~lr~~~~g-~----------------------------------------------~~~l   35 (686)
T TIGR03797         4 LLVACAAVGRAMGIEI-RPPARSENLSR-S----------------------------------------------PEPL   35 (686)
T ss_pred             HHHHHHHHHHHhCCCC-ChHHHHHHcCC-C----------------------------------------------HHHH
Confidence            5899999999999998 99999987533 3                                              2345


Q ss_pred             HHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCCEEEE
Q 024378          149 FQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEI  228 (268)
Q Consensus       149 f~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I  228 (268)
                      .+.|++.|+.++..+.+.+++.    +.+.|||++|+.                       .+|||||+++++  ++++|
T Consensus        36 ~~~~~~~g~~~~~~~~~~~~l~----~~~lP~i~~~~~-----------------------~~h~vvl~~~~~--~~~~i   86 (686)
T TIGR03797        36 EAIARASRLRIRRVRLEGGWWR----QDSGPLLAYTAE-----------------------DGRPVALLPVSR--GGYEI   86 (686)
T ss_pred             HHHHHHCCCceEEEecCHHHHh----hCCCCEEEEEcC-----------------------CCCEEEEEEEcC--CEEEE
Confidence            5556666666666666665543    335899999962                       489999999976  58999


Q ss_pred             ecCCCCCceeEeCHHHHHHH
Q 024378          229 RDPASCRKREKVTLKCLEEA  248 (268)
Q Consensus       229 ~DPa~g~~~~~is~~eFe~a  248 (268)
                      .||+.|+ ..+++.+||++.
T Consensus        87 ~dP~~g~-~~~~~~~e~~~~  105 (686)
T TIGR03797        87 FDPATGT-RRRVDAAMAATL  105 (686)
T ss_pred             ECCCCCC-CcccCHHHHHhc
Confidence            9999985 448999999887

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes

Probab=99.00  E-value=4.6e-09  Score=89.86  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             cCceecccCc-CcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHH-cCceeEEEEeecCCCCCCcchhh
Q 024378           56 EVPHINQLFS-WDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQK-FNVGFSYFTITLGANPNYSVETF  133 (268)
Q Consensus        56 ~vP~i~Q~~~-~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~-~gv~~~~~T~tlG~~p~y~~~~F  133 (268)
                      .||++.|..+ +-|=.||..||..|.+... .               +++.+|.+. -|+..++                
T Consensus        23 ~v~~v~Qq~~~mgCWaA~~~Mv~~w~~~~p-r---------------lg~~eLyra~~Glp~~l----------------   70 (166)
T PF12385_consen   23 AVPYVPQQNTRMGCWAACACMVGGWRDQGP-R---------------LGPPELYRADEGLPSQL----------------   70 (166)
T ss_pred             EeeeeccCCCcccHHHHHHHHHHHHhcCCC-C---------------CCcHHHHHHhcCCchhh----------------
Confidence            3999999986 7999999999999997652 1               566666555 4433211                


Q ss_pred             hhhccCchHHHHHHHHHHHHHcCCeeee-eccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCc
Q 024378          134 YKEQLPTDLVRVDMLFQKARSAGIKIEC-GSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGH  212 (268)
Q Consensus       134 Y~~~~~~D~~Rv~~lf~~A~~~Gi~~~~-~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gH  212 (268)
                       +     |..++.++...+.-.++.... .+.+.+++..+|.+. .|.++=|..-  .                ....+|
T Consensus        71 -q-----~g~d~~~~~~~~gl~~v~~P~~~~~t~e~~~~LL~~y-GPLwv~~~~P--~----------------~~~~~H  125 (166)
T PF12385_consen   71 -Q-----DGLDPEDFIRNEGLKEVPEPANASYTAEGLANLLREY-GPLWVAWEAP--G----------------DSWVAH  125 (166)
T ss_pred             -c-----ccccHHHHHHhcCccccCCCcccccCHHHHHHHHHHc-CCeEEEecCC--C----------------Ccceee
Confidence             0     111133333333333444433 466888999999775 5888776641  0                012369


Q ss_pred             EEEEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHh
Q 024378          213 YILICGYDANSDEFEIRDPASCRKREKVTLKCLEEAR  249 (268)
Q Consensus       213 YVVL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~  249 (268)
                      -+||+|++.+.+.+.|+||..++ ..+|++++|..++
T Consensus       126 ~~ViTGI~~dg~~i~~~DP~~gP-~~~m~l~~fn~~~  161 (166)
T PF12385_consen  126 ASVITGIDGDGDSIHVHDPEQGP-NLRMSLDMFNQAL  161 (166)
T ss_pred             EEEEEeecCCCCeEEecCcccCC-CceecHHHHhhhh
Confidence            99999999988999999999995 5789999999874

Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].

>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase

Probab=98.83  E-value=1.7e-07  Score=86.35  Aligned_cols=93  Identities=30%  Similarity=0.367  Sum_probs=70.0

Q ss_pred             HHHHHcCCeeeeecc-CHH----HHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCCC
Q 024378          150 QKARSAGIKIECGSI-SGV----EISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANSD  224 (268)
Q Consensus       150 ~~A~~~Gi~~~~~~v-s~~----~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~  224 (268)
                      ..++.+|+.++.... +.+    .|.+.|.+| .|+|+.+|.+.|.+..       .  ..+....+|||||.|||.+++
T Consensus        57 ~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~~g-~pv~~~~D~~~lpy~~-------~--~~~~~~~~H~i~v~G~d~~~~  126 (317)
T PF14399_consen   57 NLLERLGIKYEWREFSSPDEAWEELKEALDAG-RPVIVWVDMYYLPYRP-------N--YYKKHHADHYIVVYGYDEEED  126 (317)
T ss_pred             HHHHHCCceEEEEecCCHHHHHHHHHHHHhCC-CceEEEeccccCCCCc-------c--ccccccCCcEEEEEEEeCCCC
Confidence            567889999885444 344    577777777 6999999988775421       0  001223589999999997778


Q ss_pred             EEEEecCCCCCceeEeCHHHHHHHhhcCC
Q 024378          225 EFEIRDPASCRKREKVTLKCLEEARKSFG  253 (268)
Q Consensus       225 ~f~I~DPa~g~~~~~is~~eFe~a~~s~G  253 (268)
                      .|+|.||.. .....++.++|.+||.+-+
T Consensus       127 ~~~v~D~~~-~~~~~~~~~~l~~A~~~~~  154 (317)
T PF14399_consen  127 VFYVSDPPS-YEPGRLPYEDLAKARFSEG  154 (317)
T ss_pred             EEEEEcCCC-CcceeecHHHHHHHHhccC
Confidence            999999944 4578999999999998766

>COG3271 Predicted double-glycine peptidase [General function prediction only]

Probab=98.81  E-value=4.2e-08  Score=87.17  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=93.9

Q ss_pred             ecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccC
Q 024378           60 INQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLP  139 (268)
Q Consensus        60 i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~  139 (268)
                      |+|..++.||.|||+-+|.+++-+.-+.+...+            ...++++|+++                        
T Consensus        36 Irq~~d~ScGaaalatll~n~~gk~~~e~~~~~------------~m~~~~~~~s~------------------------   79 (201)
T COG3271          36 IRQTTDFSCGAAALATLLNNDYGKLADESLVLI------------EMNLEEFGESF------------------------   79 (201)
T ss_pred             HHhhhccCchHHHHHHHHHhhccccCCHHHHHH------------HhhHHHhhhcH------------------------
Confidence            999999999999999999999666413222211            11255566544                        


Q ss_pred             chHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEE
Q 024378          140 TDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGY  219 (268)
Q Consensus       140 ~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gy  219 (268)
                            ..+...+++.|.+++....+.+++.+.    ..|+||++.-.                     -..||+|+.|.
T Consensus        80 ------~g~~~~~~~~g~~a~~~~~~~~~l~q~----~~p~iV~~~~~---------------------~~~hf~v~~~v  128 (201)
T COG3271          80 ------SGMARAIKSLGNRAQGYENEFESLAQL----KIPVIVTLKYP---------------------ANNHFDVVIGV  128 (201)
T ss_pred             ------HHHHHHhhCCCCcccccccchhhhhhc----cCCeeEEeecC---------------------CCceeEEEEec
Confidence                  345577889999988888888886543    35999988731                     24799999999


Q ss_pred             eCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCC
Q 024378          220 DANSDEFEIRDPASCRKREKVTLKCLEEARKSFGT  254 (268)
Q Consensus       220 d~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~Gt  254 (268)
                      +.  +.+++.||+-+  ..+.+...|+..|...+.
T Consensus       129 ~~--~~v~l~Dp~~g--~i~~~~~~f~~~w~~~~~  159 (201)
T COG3271         129 DG--DNVTLADPALG--NIRGKRAQFLSIWDGHVL  159 (201)
T ss_pred             cC--CeeEEcChhhC--CccchhHHHHHHhhhcce
Confidence            87  47999999987  568999999999986654

>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.61  E-value=4e-07  Score=79.59  Aligned_cols=153  Identities=24%  Similarity=0.279  Sum_probs=96.1

Q ss_pred             ccCceecccC---cCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcch
Q 024378           55 VEVPHINQLF---SWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVE  131 (268)
Q Consensus        55 ~~vP~i~Q~~---~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~  131 (268)
                      ++||.|.|++   -.-|=+.+++|+|+|.|+.+ +-..+....-+.   .++--     .|+.        | ||..+.+
T Consensus        28 L~v~~InQm~i~ly~GCEvvslam~L~y~Gk~v-tk~~la~~~~t~---p~npn-----~Gy~--------G-nP~~~~v   89 (195)
T COG4990          28 LDVGLINQMTIGLYQGCEVVSLAMMLQYLGKTV-TKNILARNWPTH---PINPN-----SGYV--------G-NPWDAFV   89 (195)
T ss_pred             ccccchhhcCcccccchHHHHHHHHHHHcCCCC-cHHHHhhccCCC---CCCCC-----cCcc--------C-CCchhhc
Confidence            6899999985   36799999999999999998 655554322111   00000     0000        0 0110000


Q ss_pred             hhhhh----ccCchHHHHHHHHHHHHHcCCeeeeecc-CHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCC
Q 024378          132 TFYKE----QLPTDLVRVDMLFQKARSAGIKIECGSI-SGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSD  206 (268)
Q Consensus       132 ~FY~~----~~~~D~~Rv~~lf~~A~~~Gi~~~~~~v-s~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~  206 (268)
                      .|-..    ++.      ..+...|++....+...+- |+.+|...|.+|+ |+.+.+-.  ++.               
T Consensus        90 g~~~n~g~tI~p------~al~~fakkY~~~a~d~tGksl~~ik~ql~kg~-PV~iw~T~--~~~---------------  145 (195)
T COG4990          90 GFPYNYGLTIWP------TALVSFAKKYNGNAVDLTGKSLSDIKGQLLKGR-PVVIWVTN--FHS---------------  145 (195)
T ss_pred             cCccCCCceech------HHHHHHHHHhCCccccCcCCcHHHHHHHHhcCC-cEEEEEec--ccc---------------
Confidence            00000    111      2344555555555544443 7888988898885 65543332  322               


Q ss_pred             CCcCCcEEEEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCC
Q 024378          207 SGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGT  254 (268)
Q Consensus       207 ~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~Gt  254 (268)
                        |.=|-|+|+|||+.  .|++.||... +..+++.+.|+..|.+.|-
T Consensus       146 --~s~H~v~itgyDk~--n~yynDpyG~-kn~~~~~~~~e~g~n~~g~  188 (195)
T COG4990         146 --YSIHSVLITGYDKY--NIYYNDPYGY-KNRKISHTYLEDGWNAQGN  188 (195)
T ss_pred             --cceeeeEeeccccc--ceEecccccc-chhhhhHHHHHHHHhhhcc
Confidence              46799999999984  7999999954 6789999999999999886

>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2

Probab=98.39  E-value=3.6e-06  Score=75.52  Aligned_cols=142  Identities=25%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             ceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhh-------HHHHHHHcCceeEEEEeecCCCCCCcc
Q 024378           58 PHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVD-------LAYLLQKFNVGFSYFTITLGANPNYSV  130 (268)
Q Consensus        58 P~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtid-------La~ll~~~gv~~~~~T~tlG~~p~y~~  130 (268)
                      -|..|.+..-||+|+++|||+.++++. +. +.  ..+....||-+       +.. -.+.|+                 
T Consensus        40 ~f~tQ~~~a~CGvASlamVLNAL~~d~-P~-~~--~~~~~~~~tq~~l~~~~~~~~-v~~~Gi-----------------   97 (212)
T PF05023_consen   40 QFVTQSNPAYCGVASLAMVLNALGIDA-PG-RV--WKGPWRWFTQEMLDCCIPLES-VKREGI-----------------   97 (212)
T ss_dssp             H----SSCCGHHHHHHHHHHHHHT--------T--TTTT-----TTTCCHHS-HHH-HHHH-------------------
T ss_pred             HhccCCCCCcchHHHHHHHHHHhcccC-Cc-cc--ccCCcceeehhhhhccccHHH-HhhcCC-----------------
Confidence            467788899999999999999999861 10 00  00111111111       111 111222                 


Q ss_pred             hhhhhhccCchHHHHHHHHHHHHHcCCeeee---eccCHHHHHHHHhc----CCceEEEEEeCcccccccccccccCCcc
Q 024378          131 ETFYKEQLPTDLVRVDMLFQKARSAGIKIEC---GSISGVEISLMILS----GNYIAIALVDQYKLSHSWMEDVIVPGFY  203 (268)
Q Consensus       131 ~~FY~~~~~~D~~Rv~~lf~~A~~~Gi~~~~---~~vs~~~L~~~l~~----g~~PaIvLvn~~~L~~~~~~~~~~~~~~  203 (268)
                                   .+.++...|+..|+.++.   ...+++++.+++.+    .+.-+||-.+...|..            
T Consensus        98 -------------TL~e~~~la~~~g~~~~~~~~~~~s~~~FR~~l~~~~~~~~~~livnf~R~~lgq------------  152 (212)
T PF05023_consen   98 -------------TLDEFACLAKCNGLRVEVYRADDSSLDEFRQHLKEALSDPNDFLIVNFDRKALGQ------------  152 (212)
T ss_dssp             --------------HHHHHHHHHTTT-EEEEEEGGGS-HHHHHHHHHHHCTSTTEEEEEEEEGGGGTS------------
T ss_pred             -------------CHHHHHHHHHhcCCceEEEeCCcCCHHHHHHHHHHHhCCCCCEEEEECcccccCC------------
Confidence                         246667778888876554   45677887777643    2234444344332221            


Q ss_pred             CCCCCcCCcEEEEEEEeCCCCEEEEecCCCC-CceeEeCHHHHHHHhh
Q 024378          204 GSDSGYTGHYILICGYDANSDEFEIRDPASC-RKREKVTLKCLEEARK  250 (268)
Q Consensus       204 ~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g-~~~~~is~~eFe~a~~  250 (268)
                          ...|||-.|-|||.+++.|.|.|.+.. -....++.+.|-++=.
T Consensus       153 ----~G~GHfSPigaY~~~tD~vLilDVar~kYpp~WV~~~~L~~AM~  196 (212)
T PF05023_consen  153 ----TGGGHFSPIGAYDAETDRVLILDVARFKYPPYWVPLERLYEAMN  196 (212)
T ss_dssp             ----SSSEEEEEEEEEETTTTEEEE--S-TTT---EEEEHHHHHHHHS
T ss_pred             ----CCCCcccccceecccCCeEEEEecccccCCCEEeEHHHHHHHHh
Confidence                125999999999999999999999954 3556788877766644

3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process; PDB: 2BTW_A 2BU3_B.

>KOG0632 consensus Phytochelatin synthase [Inorganic ion transport and metabolism]

Probab=93.21  E-value=0.095  Score=49.59  Aligned_cols=26  Identities=38%  Similarity=0.451  Sum_probs=23.2

Q ss_pred             cCCcEEEEEEEeCCCCEEEEecCCCC
Q 024378          209 YTGHYILICGYDANSDEFEIRDPASC  234 (268)
Q Consensus       209 y~gHYVVL~Gyd~~~~~f~I~DPa~g  234 (268)
                      -.|||--|-||+.+.+++.|.|=|.-
T Consensus       158 GtGHFSPiggy~e~~d~~LIlDVARF  183 (388)
T KOG0632|consen  158 GTGHFSPIGGYNEERDMALILDVARF  183 (388)
T ss_pred             CCCccCcccccCcccCceEEeehhhc
Confidence            36999999999998899999998864

>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.22  E-value=3.8  Score=37.04  Aligned_cols=65  Identities=17%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             cCceecc---cCcCcchHHHHHHHHHHhCC-------------CCCChhHHHHHhc-------------------ccccc
Q 024378           56 EVPHINQ---LFSWDCGLACVLMVLRTIGI-------------NNCNIQGLAEQCC-------------------TTSIW  100 (268)
Q Consensus        56 ~vP~i~Q---~~~~DCGlACl~MVL~y~g~-------------~~~~~~~L~el~~-------------------ttsiw  100 (268)
                      .+-|+.|   ..-|-||-=-++|++.|+-.             .+.++.+|.+...                   ++.-|
T Consensus        10 ~~~Hy~~~~~D~GWGCGYRniQml~S~l~~~~~~~~~~~~~~~~vPsi~~iQ~~le~awdkG~d~~G~~~~~~~~GsrkW   89 (218)
T PF07910_consen   10 DYYHYSQGFDDEGWGCGYRNIQMLCSWLLHQDQPGYEQFFGGSRVPSIREIQQWLEEAWDKGFDPQGAQLTGGFVGSRKW   89 (218)
T ss_dssp             B---TTTT---TTT-HHHHHHHHHHCCCCC-------TTS--TT---HHHHHHHHHHCTSS---C-------CGTT----
T ss_pred             CEEEEeecCCCCCccchhhHHHHHHHHHHhhhccccccccCCCCCCCHHHHHHHHHHHHhhcCCcccccccccccccccE
Confidence            4667777   55799999999999999855             1223444433321                   34456


Q ss_pred             --hhhHHHHHHHcCceeEEEEe
Q 024378          101 --TVDLAYLLQKFNVGFSYFTI  120 (268)
Q Consensus       101 --tidLa~ll~~~gv~~~~~T~  120 (268)
                        |.+++.+|..+|++++....
T Consensus        90 IGt~E~~~~l~~~gi~~~i~~f  111 (218)
T PF07910_consen   90 IGTTEASALLRSLGIPCKIVDF  111 (218)
T ss_dssp             --HHHHHHHHHHC-SEEEEEEE
T ss_pred             EcHHHHHHHHhhCCceEEEEEE
Confidence              89999999999999876553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.90  E-value=18  Score=31.83  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             HHHHHHHHHcCCee--eeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCC
Q 024378          146 DMLFQKARSAGIKI--ECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS  223 (268)
Q Consensus       146 ~~lf~~A~~~Gi~~--~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~  223 (268)
                      +++++-++..|..+  ..+.++.+++.+++++. .|++++.+.-               -.++....||=+||.||-...
T Consensus        69 ~~~i~y~ks~g~~~~~~n~~~s~~eV~~~~~~n-k~i~i~~~~v---------------~~~~~~~~gHAlavvGya~~~  132 (175)
T PF05543_consen   69 NQMIKYAKSQGRNPQYNNRMPSFDEVKKLIDNN-KGIAILADRV---------------EQTNGPHAGHALAVVGYAKPN  132 (175)
T ss_dssp             HHHHHHHHHTTEEEEEECS---HHHHHHHHHTT--EEEEEEEET---------------TSCTTB--EEEEEEEEEEEET
T ss_pred             HHHHHHHHHcCcchhHhcCCCCHHHHHHHHHcC-CCeEEEeccc---------------ccCCCCccceeEEEEeeeecC
Confidence            45666677777544  44566899999888776 4666666631               011222479999999996422


Q ss_pred             ---CEEEEecCCCCC
Q 024378          224 ---DEFEIRDPASCR  235 (268)
Q Consensus       224 ---~~f~I~DPa~g~  235 (268)
                         ..++|=+|--..
T Consensus       133 ~g~~~y~~WNPW~~~  147 (175)
T PF05543_consen  133 NGQKTYYFWNPWWND  147 (175)
T ss_dssp             TSEEEEEEE-TT-SS
T ss_pred             CCCeEEEEeCCccCC
Confidence               378888998763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
3erv_A	236	Putative C39-like peptidase; structural genomics,	4e-04
3k8u_A	156	Putative ABC transporter, ATP-binding protein COMA	8e-04

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis} Length = 236

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 46/230 (20%), Positives = 70/230 (30%), Gaps = 28/230 (12%)

Query: 30  VECCPSDQSPSGRKCGDSILPSAHFVEVPHINQLFSWD--CGLACVLMVLRTIGINNCNI 87
           VE        SG++   +         VP I QL   D  C +  + M+L+  GI    +
Sbjct: 10  VEKLTFFNIQSGKQVEFNRDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITVDKM 69

Query: 88  QGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYS-VETFYKEQLPTDLVRVD 146
           + LA +                            +  NPN   V   Y        V   
Sbjct: 70  K-LANEIKKVDFMN------------------DGVRGNPNEGFVGNIYTFSESGYGVYHG 110

Query: 147 MLFQKARS--AGIKIECGSISGVEISLMILSGN-YIAIALVDQYKLSHSWMEDVIVPGFY 203
            LFQ A+       ++    S  E+   + +G   + I       L              
Sbjct: 111 PLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNN-G 169

Query: 204 GSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFG 253
                Y  H +++ GYD   +   IRDP       KV  +  E+A    G
Sbjct: 170 DVSITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMG 217

>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans} Length = 156

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 57 VPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTS 98
             + Q+ + DCG A +  V +  G  N +I  L E   T  
Sbjct: 6  YKLVPQIDTRDCGPAVLASVAKHYGS-NYSIAYLRELSKTNK 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
3k8u_A	156	Putative ABC transporter, ATP-binding protein COMA	99.88
3b79_A	129	Toxin secretion ATP-binding protein; alpha-beta st	99.8
3zua_A	142	CLD, alpha-hemolysin translocation ATP-binding pro	99.76
3erv_A	236	Putative C39-like peptidase; structural genomics,	99.74
2bu3_A	254	ALR0975 protein; phytochelatin synthase, PCS, acyl	98.67
2z84_A	218	UFSP1, UFM1-specific protease 1; alpha/beta, papai	90.97
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	86.86
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	83.45
3oqc_A	481	UFSP2, UFM1-specific protease 2; DPH motif Cys pro	82.32
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	82.13

>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}

Probab=99.88  E-value=6e-22  Score=164.75  Aligned_cols=138  Identities=19%  Similarity=0.216  Sum_probs=105.4

Q ss_pred             ccCceecccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhh
Q 024378           55 VEVPHINQLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFY  134 (268)
Q Consensus        55 ~~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY  134 (268)
                      .++|+++|.++.|||+|||+||++|||++. +.+.|++.+..+.                       -|.+         
T Consensus         4 ~~~p~~~Q~~~~dcglacLa~i~~~~g~~~-s~~~L~~~~~~~~-----------------------~g~s---------   50 (156)
T 3k8u_A            4 RHYKLVPQIDTRDCGPAVLASVAKHYGSNY-SIAYLRELSKTNK-----------------------QGTT---------   50 (156)
T ss_dssp             -CCCCCCCSSTTCHHHHHHHHHHHHTTCCC-CHHHHHHHTTCBT-----------------------TBCC---------
T ss_pred             CCCceEECCCCCCHHHHHHHHHHHHhCCCC-CHHHHHHHcCCCC-----------------------CCcC---------
Confidence            579999999999999999999999999998 8888887754221                       0211         


Q ss_pred             hhccCchHHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEE
Q 024378          135 KEQLPTDLVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYI  214 (268)
Q Consensus       135 ~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYV  214 (268)
                                ...+.+.|++.|+.++..+++.+.+.  |.+.+.|||++|+.+                    +..+|||
T Consensus        51 ----------~~~l~~~a~~~Gl~a~~~~~~~~~~~--l~~~~lP~I~~~~~~--------------------g~~~hfv   98 (156)
T 3k8u_A           51 ----------ALGIVEAAKKLGFETRSIKADMTLFD--YNDLTYPFIVHVIKG--------------------KRLQHYY   98 (156)
T ss_dssp             ----------HHHHHHHHHHTTEEEEEEECCGGGGG--CTTCCSCEEEEEEET--------------------TEEEEEE
T ss_pred             ----------HHHHHHHHHHCCCeeEEEEeehhhhh--HhcCCCCEEEEEEec--------------------CCCcEEE
Confidence                      35667788888888888888877321  234568999999731                    1137999


Q ss_pred             EEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecC
Q 024378          215 LICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE  264 (268)
Q Consensus       215 VL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~  264 (268)
                      ||.|++.  +.++|.||+.|.+...++.+||++.|+  |   .+|++.-.
T Consensus        99 Vl~~~~~--~~v~I~DP~~g~~~~~ls~~ef~~~w~--G---~~l~~~p~  141 (156)
T 3k8u_A           99 VVYGSQN--NQLIIGDPDPSVKVTRMSKERFQSEWT--G---LAIFLAPQ  141 (156)
T ss_dssp             EEEEEET--TEEEEEECSTTTEEEEEEHHHHHHHEE--E---EEEEEEEC
T ss_pred             EEEEEcC--CEEEEEcCCCCcceEEEcHHHHHhhCc--e---EEEEEEcC
Confidence            9999986  589999999984467999999999996  2   46666543

>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.5e-19  Score=144.42  Aligned_cols=116  Identities=19%  Similarity=0.091  Sum_probs=90.7

Q ss_pred             CcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCchHH
Q 024378           64 FSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTDLV  143 (268)
Q Consensus        64 ~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D~~  143 (268)
                      .+.|||+|||+||++|||++. +.+.|++.+....                       -|.+                  
T Consensus         3 ~~~dcgla~L~~i~~~~g~~~-~~~~l~~~~~~~~-----------------------~g~s------------------   40 (129)
T 3b79_A            3 AMKDPLLNSLIYVSRYYGLAN-SPEALVNGLPLSD-----------------------GKLT------------------   40 (129)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCC-CHHHHHTTCCCBT-----------------------TBCC------------------
T ss_pred             CcCCcHHHHHHHHHHHhCCCC-CHHHHHhcCCCcC-----------------------CCCC------------------
Confidence            357999999999999999998 8888887754221                       1222                  


Q ss_pred             HHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCCC
Q 024378          144 RVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDANS  223 (268)
Q Consensus       144 Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~  223 (268)
                       ...+.+.|++.|+.++..+.+.++|.+    .+.|||++|+                        .||||||.|++.++
T Consensus        41 -~~~l~~~a~~~Gl~~~~~~~~~~~L~~----l~lP~I~~~~------------------------~~h~vVl~~~~~~~   91 (129)
T 3b79_A           41 -PFLLPRAAERAGLVAKENRAELEKISS----LILPAILVLK------------------------GGDSCVLNSINMET   91 (129)
T ss_dssp             -TTTHHHHHHHHTEEEEEEECCGGGSCG----GGCSEEEEEG------------------------GGEEEEEEEEETTT
T ss_pred             -HHHHHHHHHHCCCeEEEEECCHHHCCc----CCCCEEEEEc------------------------CCCEEEEEEEcCCC
Confidence             234667888888888888888887643    3479999998                        38999999999854


Q ss_pred             CEEEEecCCCCCceeEeCHHHHHHHhh
Q 024378          224 DEFEIRDPASCRKREKVTLKCLEEARK  250 (268)
Q Consensus       224 ~~f~I~DPa~g~~~~~is~~eFe~a~~  250 (268)
                      +.++|.||+.+.+...++.+||++.|+
T Consensus        92 ~~~~i~dp~~~~g~~~~~~~ef~~~w~  118 (129)
T 3b79_A           92 REAEVTTLESGMVPISIPLEDLLEQYT  118 (129)
T ss_dssp             TEEEEECTTTTTSCEEEEHHHHHHHEE
T ss_pred             ceEEEEccCCCCCcEEeeHHHHHhhCC
Confidence            479999999333467999999999995

>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}

Probab=99.76  E-value=9.5e-18  Score=137.28  Aligned_cols=126  Identities=15%  Similarity=0.178  Sum_probs=96.5

Q ss_pred             ccCcCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCCCCCcchhhhhhccCch
Q 024378           62 QLFSWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGANPNYSVETFYKEQLPTD  141 (268)
Q Consensus        62 Q~~~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~p~y~~~~FY~~~~~~D  141 (268)
                      |..+.|||+|||+||++|||++. +.+.|++.+..+.                       -|.+                
T Consensus         8 ~~~~~dcglacLa~i~~~~g~~~-s~~~L~~~~~~~~-----------------------~g~s----------------   47 (142)
T 3zua_A            8 SCHKIDYGLYALEILAQYHNVSV-NPEEIKHRFDTDG-----------------------TGLG----------------   47 (142)
T ss_dssp             SCCCCCHHHHHHHHHHHHTTCCC-CHHHHHHHTCTTS-----------------------SCCC----------------
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCC-CHHHHHHHcCCCc-----------------------CCcC----------------
Confidence            55568999999999999999998 8888887754321                       0212                


Q ss_pred             HHHHHHHHHHHHHcCCeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC
Q 024378          142 LVRVDMLFQKARSAGIKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA  221 (268)
Q Consensus       142 ~~Rv~~lf~~A~~~Gi~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~  221 (268)
                         ...+.+.|++.|+.++..+++.++|.    +.+.|||++++.                       .+|||| .+++.
T Consensus        48 ---~~~l~~aa~~~Gl~a~~~~~~~~~L~----~l~lP~Il~~~~-----------------------g~~~Vv-~~~~~   96 (142)
T 3zua_A           48 ---LTSWLLAAKSLELKVKQVKKTIDRLN----FISLPALVWRED-----------------------GRHFIL-TKVSK   96 (142)
T ss_dssp             ---HHHHHHHHHTTTEEEEEEECCHHHHT----TSSSSEEECCTT-----------------------SCCEEE-EEEET
T ss_pred             ---HHHHHHHHHHCCCeeEEeecCHHHHh----cCCCCEEEEEcC-----------------------CCEEEE-EEEeC
Confidence               45677889999999999999888864    346899998752                       246766 56886


Q ss_pred             CCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecC
Q 024378          222 NSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLE  264 (268)
Q Consensus       222 ~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~  264 (268)
                      +++.++|.||+.|. ...++.+||++.|+  |   .+|++.-.
T Consensus        97 ~~~~~~I~dP~~g~-~~~~s~~ef~~~w~--G---~~l~~~~~  133 (142)
T 3zua_A           97 EANRYLIFDLEQRN-PRVLEQSEFEALYQ--G---HIILIASR  133 (142)
T ss_dssp             TTTEEEEEETTTTE-EEEEEHHHHHHHCC--S---EEEEEEES
T ss_pred             CCCEEEEEcCCCCC-cEEecHHHHHhhCC--C---EEEEEEEC
Confidence            54689999999884 67999999999996  3   46666543

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}

Probab=99.74  E-value=5.1e-17  Score=145.87  Aligned_cols=183  Identities=21%  Similarity=0.251  Sum_probs=118.4

Q ss_pred             CCCCCccccCceecccC--cCcchHHHHHHHHHHhCCCCCChhHHHHHhcccccchhhHHHHHHHcCceeEEEEeecCCC
Q 024378           48 ILPSAHFVEVPHINQLF--SWDCGLACVLMVLRTIGINNCNIQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITLGAN  125 (268)
Q Consensus        48 ~l~~~~~~~vP~i~Q~~--~~DCGlACl~MVL~y~g~~~~~~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tlG~~  125 (268)
                      .++.....+||++.|..  ...|++|+|+|+|+|+|+.. +..+|.+.....              .+.    .+...-|
T Consensus        28 ~~~~~~ll~Vp~~~Q~~~~~~gCe~tSlam~L~y~G~~~-~~~~la~~l~~~--------------p~~----~~g~~gn   88 (236)
T 3erv_A           28 RDEKVILSNVPFIQQLPELDRGCEVTSLAMMLQYAGITV-DKMKLANEIKKV--------------DFM----NDGVRGN   88 (236)
T ss_dssp             -CCCEECTTSCCCCCTTTCTTCHHHHHHHHHHHHTTCCC-CHHHHHHHSCEE--------------CSE----ETTEECC
T ss_pred             CCCceEEeCCCccccCCCCCCCCHHHHHHHHHHHcCcCC-CHHHHHHHHhhC--------------ccc----ccCCCCC
Confidence            35777778999999985  47799999999999999998 666666553111              000    0000113


Q ss_pred             CCC--cchhh--hh---hccCchHHHHHHHHHHHHHcC-Ceeeeec-cCHHHHHHHHhcCCceEEEEEeCcccc------
Q 024378          126 PNY--SVETF--YK---EQLPTDLVRVDMLFQKARSAG-IKIECGS-ISGVEISLMILSGNYIAIALVDQYKLS------  190 (268)
Q Consensus       126 p~y--~~~~F--Y~---~~~~~D~~Rv~~lf~~A~~~G-i~~~~~~-vs~~~L~~~l~~g~~PaIvLvn~~~L~------  190 (268)
                      |+.  ...+|  -.   ..++      ..|++.|++.+ -.+...+ .++++|.+.|++| .|+||.++.++-.      
T Consensus        89 P~~gFvG~p~~~~~~g~giy~------~~i~~~a~~y~~~~~~dltG~sl~~L~~~I~~G-~PVIv~~t~~~~p~~~~~~  161 (236)
T 3erv_A           89 PNEGFVGNIYTFSESGYGVYH------GPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAG-QPVVIITNATFAPLDEDEF  161 (236)
T ss_dssp             TTTSEEBCSSCTTSCBCCCCH------HHHHHHHHHHCTTTEEECTTSCHHHHHHHHHTT-CCEEEEEETTSSCCCGGGC
T ss_pred             CccCccCCccccCCCcceeec------HHHHHHHHHHhhcceeecCCCCHHHHHHHHHCC-CeEEEEEeCCccccccccc
Confidence            321  01110  00   1122      55778888885 2455444 4899999999998 5999998754311      


Q ss_pred             cccccccccCCccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCCceeEeCHHHHHHHhhcCCCCceEEEEecCCC
Q 024378          191 HSWMEDVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCRKREKVTLKCLEEARKSFGTDEDLLLISLEKT  266 (268)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~~~~~is~~eFe~a~~s~GtD~dii~i~~~~~  266 (268)
                      ..|..+   .+..  .-.+.+|||||+|||+  +.++|+||+.+++..+++.++|++.|...|-   -.++++..+
T Consensus       162 ~~W~~~---~G~~--~~~~~~H~VVl~GYd~--~~vyi~DP~~g~~~~~vs~~eFe~~w~~~G~---~AI~~l~~~  227 (236)
T 3erv_A          162 TTWETN---NGDV--SITYNEHCVVLIGYDQ--ESVYIRDPLKDSLDVKVPREKFEQAWVQMGS---QAISYVKRS  227 (236)
T ss_dssp             EEEEET---TEEE--EECTTEEEEEEEEECS--SEEEEECTTSCCSCCEEEHHHHHHHHHHTTC---CEEEECSSC
T ss_pred             ceeecC---CCce--eeccCCeEEEEEEEeC--CEEEEECCCCCCccEEEcHHHHHHHHHhcCC---EEEEEECCc
Confidence            112100   0000  0124689999999998  5899999999865579999999999999995   444555544

>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B

Probab=98.67  E-value=1.7e-07  Score=84.82  Aligned_cols=146  Identities=18%  Similarity=0.258  Sum_probs=93.4

Q ss_pred             ccCceecccCcCcchHHHHHHHHHHhCCCCCC------------hhHHHHHhcccccchhhHHHHHHHcCceeEEEEeec
Q 024378           55 VEVPHINQLFSWDCGLACVLMVLRTIGINNCN------------IQGLAEQCCTTSIWTVDLAYLLQKFNVGFSYFTITL  122 (268)
Q Consensus        55 ~~vP~i~Q~~~~DCGlACl~MVL~y~g~~~~~------------~~~L~el~~ttsiwtidLa~ll~~~gv~~~~~T~tl  122 (268)
                      +...++.|.+...||+||++|||+.+|++. +            -+++-+--.+...  ..+..+ .+.|++        
T Consensus        68 L~~qf~tQ~n~ayCGlASlaMVLNALgid~-P~~~wk~pwr~~Tqe~mld~~~~~~~--~~~~~v-~~~GiT--------  135 (254)
T 2bu3_A           68 LSMQFVTQVNQAYCGVASIIMVLNSLGINA-PETAQYSPYRVFTQDNFFSNEKTKAV--IAPEVV-ARQGMT--------  135 (254)
T ss_dssp             HHHHCCCCSSTTCHHHHHHHHHHHHTTCCC---------CCCCCTTTTTC---CTTT--SCHHHH-HHHCCC--------
T ss_pred             ccccccccCCCCchHHHHHHHHHHhhCCCC-CCccccCceeeechHhHhcccccccc--cChhhh-ccCCcC--------
Confidence            567889999999999999999999999983 1            0111100000000  112211 233332        


Q ss_pred             CCCCCCcchhhhhhccCchHHHHHHHHHHHHHcCCeeeee---ccCHHHHHHHHhc----CCceEEEEEeCccccccccc
Q 024378          123 GANPNYSVETFYKEQLPTDLVRVDMLFQKARSAGIKIECG---SISGVEISLMILS----GNYIAIALVDQYKLSHSWME  195 (268)
Q Consensus       123 G~~p~y~~~~FY~~~~~~D~~Rv~~lf~~A~~~Gi~~~~~---~vs~~~L~~~l~~----g~~PaIvLvn~~~L~~~~~~  195 (268)
                                            +.++...|+..|+.++..   ..+++++.+.+.+    .+..+||-.+...|..    
T Consensus       136 ----------------------L~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~l~q----  189 (254)
T 2bu3_A          136 ----------------------LDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQ----  189 (254)
T ss_dssp             ----------------------HHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGGTC----
T ss_pred             ----------------------HHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccccCC----
Confidence                                  467778889999877643   4577777655532    2244454444333322    


Q ss_pred             ccccCCccCCCCCcCCcEEEEEEEeCCCCEEEEecCCCCC-ceeEeCHHHHHHHhh
Q 024378          196 DVIVPGFYGSDSGYTGHYILICGYDANSDEFEIRDPASCR-KREKVTLKCLEEARK  250 (268)
Q Consensus       196 ~~~~~~~~~~~~~y~gHYVVL~Gyd~~~~~f~I~DPa~g~-~~~~is~~eFe~a~~  250 (268)
                                  .-.|||.-|-||+.+++.|.|.|++.-+ ....++.+.|-++=.
T Consensus       190 ------------~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~  233 (254)
T 2bu3_A          190 ------------ERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMN  233 (254)
T ss_dssp             ------------SSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHS
T ss_pred             ------------CCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHh
Confidence                        1369999999999999999999999643 556788888777654

>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}

Probab=90.97  E-value=2.4  Score=37.26  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CceecccC----cCcchHHHHHHHHHHhCC---CCCChhHHHHHhc----------ccccc--hhhHHHHHHH-cCceeE
Q 024378           57 VPHINQLF----SWDCGLACVLMVLRTIGI---NNCNIQGLAEQCC----------TTSIW--TVDLAYLLQK-FNVGFS  116 (268)
Q Consensus        57 vP~i~Q~~----~~DCGlACl~MVL~y~g~---~~~~~~~L~el~~----------ttsiw--tidLa~ll~~-~gv~~~  116 (268)
                      .-|+.|..    -|-||-=.++|+++|-+.   .+.++.+|.+...          +++-|  |.+..++|.. +|+.++
T Consensus        33 Y~HY~~d~~~D~GWGCgYRnlQml~Swq~y~~~~iPsi~~IQ~~Le~awdkg~~~~GSrkWIGt~E~~~~l~sllgI~ck  112 (218)
T 2z84_A           33 YYHYGCDGLDDRGWGCGYRTLQTLCSWPGGQSSGVPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGR  112 (218)
T ss_dssp             CCCTTTTSCCCTTTCHHHHHHHHHHTTTBTCCTTCCCHHHHHHHHHHTTSSCTTCTTCCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEeccCCcccCCcccchhhhHHHHhhccccCCCCCCHHHHHHHHHHccccCCccccccceechHHHHHHHHhhcCCceE
Confidence            44776744    366999999999999322   1224555555321          45566  8999999999 899998


Q ss_pred             EEEeecC
Q 024378          117 YFTITLG  123 (268)
Q Consensus       117 ~~T~tlG  123 (268)
                      .....-|
T Consensus       113 i~~~~~g  119 (218)
T 2z84_A          113 LCHLPRG  119 (218)
T ss_dssp             EEEECSC
T ss_pred             EEEccCc
Confidence            8776555

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=86.86  E-value=15  Score=34.50  Aligned_cols=82  Identities=11%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHcCC--eeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeCC
Q 024378          145 VDMLFQKARSAGI--KIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDAN  222 (268)
Q Consensus       145 v~~lf~~A~~~Gi--~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~~  222 (268)
                      ..++++-++..|.  ...-+.++.+++.+.+++. .|++++.+.--              -.++....||=+||.||-..
T Consensus       252 ~~q~Iky~qsyG~~~~~~n~~ls~deVk~~id~N-k~I~v~~~~v~--------------~~~n~~~~gHAlavvGyA~~  316 (367)
T 1x9y_A          252 PNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDN-VGIMILAQSVS--------------QNPNDPHLGHALAVVGNAKI  316 (367)
T ss_dssp             HHHHHHHHHHTTEEEEEEESCCCHHHHHHHHHTT-CCEEEEEEETT--------------SCSSSCCCSEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCcchhhhcCCCCHHHHHHHHhcC-CcEEEEccccc--------------cCCCCccCceeEEEEecccc
Confidence            4567777778774  4556778999999888776 57777666310              01122257999999999532


Q ss_pred             --CCEEEEecCCCCCceeEeCH
Q 024378          223 --SDEFEIRDPASCRKREKVTL  242 (268)
Q Consensus       223 --~~~f~I~DPa~g~~~~~is~  242 (268)
                        ...++|=+|.-.. ...++.
T Consensus       317 ~~~~~y~~WNPW~~~-~~~~sa  337 (367)
T 1x9y_A          317 NDQEKLIYWNPWDTE-LSIQDA  337 (367)
T ss_dssp             TTEEEEEEECTTCSS-CEEEET
T ss_pred             CCCcEEEEecCccCC-ceeecC
Confidence              2468889999764 333433

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=83.45  E-value=20  Score=30.53  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHcC--CeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC-
Q 024378          145 VDMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA-  221 (268)
Q Consensus       145 v~~lf~~A~~~G--i~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~-  221 (268)
                      ..++.+-++..|  +....+.++.+++.+.+++++ |+.++-..-              .-.++....||=+||.||-. 
T Consensus        76 ~~q~Iky~~s~G~~~~~~nr~ls~neV~~~i~~Nk-~I~v~~~~v--------------~e~~~~~~~gHA~av~Gya~~  140 (183)
T 1pxv_A           76 PNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNV-GIMILAQSV--------------SQNPNDPHLGHALAVVGNAKI  140 (183)
T ss_dssp             HHHHHHHHHHTTCCCEEEESCCCHHHHHHHHHTTC-CEEEEEECC--------------CSSTTSCCCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcChhHhcCCCCHHHHHHHHhcCC-cEEEEcccc--------------ccCCCCccCceeEEEEeeeec
Confidence            355666777777  567788899999999998875 665544420              00122336799999999953 


Q ss_pred             -CCCEEEEecCCCC
Q 024378          222 -NSDEFEIRDPASC  234 (268)
Q Consensus       222 -~~~~f~I~DPa~g  234 (268)
                       +.+.++|=+|--+
T Consensus       141 ~~~~~y~~WNPW~~  154 (183)
T 1pxv_A          141 NDQEKLIYWNPWDT  154 (183)
T ss_dssp             TTEEEEEEECTTCS
T ss_pred             CCCeEEEEeCCccC
Confidence             2236888899876

>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}

Probab=82.32  E-value=21  Score=34.59  Aligned_cols=65  Identities=9%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CceecccC----cCcchHHHHHHHHHHhCC------CCCChhHHHHHh----------cccccc--hhhHHHHHHH-cCc
Q 024378           57 VPHINQLF----SWDCGLACVLMVLRTIGI------NNCNIQGLAEQC----------CTTSIW--TVDLAYLLQK-FNV  113 (268)
Q Consensus        57 vP~i~Q~~----~~DCGlACl~MVL~y~g~------~~~~~~~L~el~----------~ttsiw--tidLa~ll~~-~gv  113 (268)
                      .-|+.|..    -|-||-=.++|++.|+-.      .+.++.++.+..          .+++-|  |....++|.. +|+
T Consensus       299 Y~HY~qD~~~D~GWGCGYRnlQtl~Swl~~q~y~~~~iPsi~~IQ~~Le~agDk~~~f~GSRkWIGT~Ev~~vL~~llgI  378 (481)
T 3oqc_A          299 YHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERSIPTHREIQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLIGV  378 (481)
T ss_dssp             CCCSSBTTBCCTTTCHHHHHHHHHHHHHHHTTSCCSCCCCHHHHHHHHHHHTSSCGGGTTCCCCCCHHHHHHHHHHHHCC
T ss_pred             EEEeccCCCCCCCcccchhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCCccccccccceechHHHHHHHHHhcCC
Confidence            45888753    499999999999999722      223455555542          155566  7889999987 899


Q ss_pred             eeEEEEee
Q 024378          114 GFSYFTIT  121 (268)
Q Consensus       114 ~~~~~T~t  121 (268)
                      .++.-...
T Consensus       379 ~cri~~~~  386 (481)
T 3oqc_A          379 TSKILFVN  386 (481)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEec
Confidence            88765543

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=82.13  E-value=22  Score=30.07  Aligned_cols=74  Identities=14%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             HHHHHHHHHcC--CeeeeeccCHHHHHHHHhcCCceEEEEEeCcccccccccccccCCccCCCCCcCCcEEEEEEEeC--
Q 024378          146 DMLFQKARSAG--IKIECGSISGVEISLMILSGNYIAIALVDQYKLSHSWMEDVIVPGFYGSDSGYTGHYILICGYDA--  221 (268)
Q Consensus       146 ~~lf~~A~~~G--i~~~~~~vs~~~L~~~l~~g~~PaIvLvn~~~L~~~~~~~~~~~~~~~~~~~y~gHYVVL~Gyd~--  221 (268)
                      .+.++-++..|  +....+.+|.+++.+.+++++.++|.+=+..                ..+....||=+||.||-.  
T Consensus        68 ~e~iky~~s~g~~~~~~n~~ls~~eV~~~~~~nk~i~i~~~~ve----------------~~~~~~~gHAlav~Gy~~~~  131 (174)
T 1cv8_A           68 REMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVE----------------SRNGMHAGHAMAVVGNAKLN  131 (174)
T ss_dssp             HHHHHHHHHTTCCCEEESSCCCHHHHHHHHHTTCCEEEEEEESS----------------CBTTBCCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHcCCChhhhcCCCCHHHHHHHHhcCCceEEEccccc----------------CCCCCCCceeEEEEeeeeec
Confidence            45666677777  5567788899999999988864445433210                111235799999999964  


Q ss_pred             -CCCEEEEecCCCCC
Q 024378          222 -NSDEFEIRDPASCR  235 (268)
Q Consensus       222 -~~~~f~I~DPa~g~  235 (268)
                       +...++|=+|--..
T Consensus       132 ng~~~y~~WNPW~~~  146 (174)
T 1cv8_A          132 NGQEVIIIWNPWDNG  146 (174)
T ss_dssp             TSCEEEEEECTTCSS
T ss_pred             CCceEEEEeCCccCC
Confidence             23468888998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d2bu3a1	210	Primitive phytochelatin synthase {Nostoc sp. pcc 7	98.55
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	88.0

>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Phytochelatin synthase
domain: Primitive phytochelatin synthase
species: Nostoc sp. pcc 7120 [TaxId: 103690]

Probab=98.55  E-value=7.9e-07  Score=76.26  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=33.0

Q ss_pred             CCcEEEEEEEeCCCCEEEEecCCCCC-ceeEeCHHHHHHHh
Q 024378          210 TGHYILICGYDANSDEFEIRDPASCR-KREKVTLKCLEEAR  249 (268)
Q Consensus       210 ~gHYVVL~Gyd~~~~~f~I~DPa~g~-~~~~is~~eFe~a~  249 (268)
                      .|||-.|-||+.+++.|.|.||+..+ ....++.+.|-++=
T Consensus       153 ~GHfSPI~gY~~~~d~vlilDvar~kypp~Wv~~~~L~~am  193 (210)
T d2bu3a1         153 GGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAM  193 (210)
T ss_dssp             SEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHH
T ss_pred             CcceeeEEEEcCCCCEEEEEecCcccCCCeEeEHHHHHHHH
Confidence            69999999999999999999998653 45678777766654