Query 024380
Match_columns 268
No_of_seqs 160 out of 1027
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 3.1E-54 6.6E-59 382.7 24.8 216 25-253 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 2.4E-53 5.3E-58 376.8 20.8 216 24-251 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 5.6E-43 1.2E-47 307.4 23.7 196 46-252 14-223 (223)
4 cd07308 lectin_leg-like legume 99.9 8.7E-26 1.9E-30 197.9 22.4 183 46-251 20-216 (218)
5 cd06902 lectin_ERGIC-53_ERGL E 99.9 5.1E-23 1.1E-27 181.4 22.0 189 46-252 22-223 (225)
6 cd06901 lectin_VIP36_VIPL VIP3 99.9 3.1E-22 6.8E-27 178.7 23.4 193 46-258 20-228 (248)
7 cd06903 lectin_EMP46_EMP47 EMP 99.8 8.1E-19 1.8E-23 153.7 21.0 179 46-252 21-213 (215)
8 PF03388 Lectin_leg-like: Legu 99.8 4.9E-19 1.1E-23 156.6 19.7 186 46-250 22-225 (229)
9 KOG3838 Mannose lectin ERGIC-5 99.8 1.8E-17 3.9E-22 152.5 20.0 226 2-252 10-254 (497)
10 KOG3839 Lectin VIP36, involved 99.7 2.4E-15 5.3E-20 136.3 14.8 186 46-250 72-272 (351)
11 cd06900 lectin_VcfQ VcfQ bacte 99.1 2.3E-08 4.9E-13 88.2 21.5 183 62-250 37-253 (255)
12 cd00110 LamG Laminin G domain; 86.9 13 0.00029 29.2 13.2 93 70-205 8-100 (151)
13 smart00282 LamG Laminin G doma 77.2 31 0.00068 26.8 9.5 26 178-205 57-82 (135)
14 KOG3514 Neurexin III-alpha [Si 69.9 30 0.00065 37.4 9.3 143 46-231 804-963 (1591)
15 PF12248 Methyltransf_FA: Farn 33.1 2.2E+02 0.0047 21.6 6.7 46 180-233 49-94 (102)
16 smart00159 PTX Pentraxin / C-r 27.0 89 0.0019 26.8 3.9 28 178-205 85-112 (206)
17 smart00560 LamGL LamG-like jel 26.6 93 0.002 24.5 3.7 23 183-205 61-83 (133)
18 cd00152 PTX Pentraxins are pla 23.1 1.1E+02 0.0024 26.0 3.8 26 180-205 87-112 (201)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=3.1e-54 Score=382.71 Aligned_cols=216 Identities=35% Similarity=0.575 Sum_probs=190.8
Q ss_pred eeEEcCCCCCCCCCccccccccCeEEecceEeCCC-CC--CCCC--CCceEEEEeccceeccc------CCeEEEEEEEE
Q 024380 25 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPG-PP--PNLP--IRKVGRVLYGKPLSLQR------SFIDTTITIKI 93 (268)
Q Consensus 25 ~~F~f~~F~~~~~~~~~~~~~~~l~l~G~A~~~~~-~i--T~~~--~~~~G~~~y~~Pi~l~~------~sFst~F~F~I 93 (268)
++|+|++|..+. ++|.|+|+|.+..+ .+ |++. ++++|||||++||++|+ ++|+|+|+|+|
T Consensus 1 ~~f~f~~f~~~~---------~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i 71 (236)
T cd06899 1 LSFNFNGFSSDQ---------SNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSI 71 (236)
T ss_pred CceecCCCCCCC---------CCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEE
Confidence 479999998753 78999999999844 45 9888 99999999999999996 69999999999
Q ss_pred eecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC---CCCCCCcEEEEEeccCc-CCCCCCCCCeeEEecCCCcc
Q 024380 94 SRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS---PGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDINGIES 169 (268)
Q Consensus 94 ~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~---~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~ns~~s 169 (268)
.+ +....+||||||||+|++ ..+.+..|++|||.+. +...++.||||||||+| ++ +||+.+||||++|++.+
T Consensus 72 ~~--~~~~~~gdGlAF~i~~~~-~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~-~D~~~nHigIdvn~~~S 147 (236)
T cd06899 72 TP--PNPSLGGDGLAFFLAPTD-SLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEF-GDPDDNHVGIDVNSLVS 147 (236)
T ss_pred Ec--CCCCCCCCeEEEEEecCC-CCCCCCCcceeeeecCCCCCCcccceEEEEeecccCccc-CCCCCCeEEEEcCCccc
Confidence 98 555689999999999987 3344688999999876 23567899999999999 66 79999999999999988
Q ss_pred ccccccc--ccccCCCceEEEEEEEecCCcEEEEEEEec--CCCceeEEEEeeeCCCCCCCceEEEEEeecCCcccceEE
Q 024380 170 NPVNSLL--DVDLKSGRAIQVRIYYNPDFGQLSIYAAYS--GETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEV 245 (268)
Q Consensus 170 ~~~~~~~--~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~--~~~~~~~ls~~idL~~~l~~~~yvGFSAsTG~~~~~h~I 245 (268)
..+..+. .++|.+|+.++|||+|++.+++|+|+|+.. .+|..|++++.+||+.+|+++|||||||+||+..|.|+|
T Consensus 148 ~~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i 227 (236)
T cd06899 148 VKAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYI 227 (236)
T ss_pred ceeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEE
Confidence 7766652 345789999999999999999999999984 378899999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 024380 246 INWTFNSF 253 (268)
Q Consensus 246 ~sWsF~s~ 253 (268)
++|+|++.
T Consensus 228 ~sWsF~s~ 235 (236)
T cd06899 228 LSWSFSSN 235 (236)
T ss_pred EEEEEEcC
Confidence 99999985
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=2.4e-53 Score=376.75 Aligned_cols=216 Identities=34% Similarity=0.593 Sum_probs=185.9
Q ss_pred ceeEEcCCCCCCCCCccccccccCeEEecceEeCCCC-C--CCCCC-CceEEEEeccceeccc------CCeEEEEEEEE
Q 024380 24 PISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGP-P--PNLPI-RKVGRVLYGKPLSLQR------SFIDTTITIKI 93 (268)
Q Consensus 24 ~~~F~f~~F~~~~~~~~~~~~~~~l~l~G~A~~~~~~-i--T~~~~-~~~G~~~y~~Pi~l~~------~sFst~F~F~I 93 (268)
+++|+|++|.. + .+++|+|+|.+..++ + |++.. +|+|||||++||+||| ++|+|+|+|+|
T Consensus 1 ~~~F~~~~F~~-~---------~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i 70 (236)
T PF00139_consen 1 SVSFSFPSFSN-S---------SNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSI 70 (236)
T ss_dssp EEEEEESSBTT-G---------TTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEE
T ss_pred CceEEcCCCCC-C---------CceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEE
Confidence 46999999933 2 799999999994444 4 88887 9999999999999987 78999999999
Q ss_pred eecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC---CCCCCCcEEEEEeccCc-CCCCCCCCCeeEEecCCCcc
Q 024380 94 SRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS---PGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDINGIES 169 (268)
Q Consensus 94 ~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~---~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~ns~~s 169 (268)
.....+...+||||||+|+|++ ..+.+..|++||+.+. +...+++||||||||+| ++ +||+.+||||++|++.+
T Consensus 71 ~~~~~~~~~~~dGlAFvi~~~~-~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~-~d~~~nHIgI~~n~~~s 148 (236)
T PF00139_consen 71 TNGPGSSNNGGDGLAFVIQPDP-NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEY-NDPDDNHIGIDVNSVVS 148 (236)
T ss_dssp EESSSSSSS-BEEEEEEEEETT-SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGG-TTTSSSEEEEEESSSSE
T ss_pred eccCCCCccCCCceEEEEecCc-ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccc-cccCCCEEEEECCCCcc
Confidence 7521256789999999999998 6666679999999875 22367899999999999 67 79999999999999998
Q ss_pred cccccc-----cccccCCCceEEEEEEEecCCcEEEEEEEec-CCCceeEEEEeeeCCCCCCCceEEEEEeecCCcccce
Q 024380 170 NPVNSL-----LDVDLKSGRAIQVRIYYNPDFGQLSIYAAYS-GETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESH 243 (268)
Q Consensus 170 ~~~~~~-----~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~-~~~~~~~ls~~idL~~~l~~~~yvGFSAsTG~~~~~h 243 (268)
..+.+. ...+|.+|+.++|||+|++.+++|+|+++.. .+|..|++++.+||+.+|+++||||||||||...|.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h 228 (236)
T PF00139_consen 149 NKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNSSKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTH 228 (236)
T ss_dssp SEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETTTTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEE
T ss_pred cccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecccCCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceE
Confidence 877442 2568899999999999999999999999995 6899999999999999999999999999999999999
Q ss_pred EEEEEEEe
Q 024380 244 EVINWTFN 251 (268)
Q Consensus 244 ~I~sWsF~ 251 (268)
+|++|+|+
T Consensus 229 ~I~sW~F~ 236 (236)
T PF00139_consen 229 DILSWSFS 236 (236)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99999996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=5.6e-43 Score=307.42 Aligned_cols=196 Identities=32% Similarity=0.517 Sum_probs=165.5
Q ss_pred cCeEEecceEeCC--CCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCC
Q 024380 46 GAIESSGALSITP--GPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAK 121 (268)
Q Consensus 46 ~~l~l~G~A~~~~--~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~ 121 (268)
.+|.++|+|.+.. +.+ |++.++|+|+|||++||+++ ++|+|+|+|+|.. . ...+||||||+|+|.+. .+.+
T Consensus 14 ~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~-~~F~~~F~f~i~~--~-~~~~gdG~aF~l~~~~~-~~~~ 88 (223)
T cd01951 14 SNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLS-KDFTTTFKFYLGT--K-GTNGADGIAFVLQNDPA-GALG 88 (223)
T ss_pred hhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEecc-CCEEEEEEEEEeC--C-CCCCCCcEEEEEecCCC-Cccc
Confidence 6899999999984 344 99999999999999999999 8999999999998 4 36789999999999873 3334
Q ss_pred CCC--ccccCCCCCCCCCCcEEEEEeccCc-CCCCCCCCCeeEEecCCCccc-------ccccccccccCCCceEEEEEE
Q 024380 122 GVG--EYLGLQSSPGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDINGIESN-------PVNSLLDVDLKSGRAIQVRIY 191 (268)
Q Consensus 122 ~~G--g~lGl~~~~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~ns~~s~-------~~~~~~~~~l~~G~~~~v~I~ 191 (268)
..| ++||+ ...++.+|||||||+| ++ .||+.+||+|++|+..+. ....+ ......|+.++|||+
T Consensus 89 ~~g~~~~lG~----~~~~~~~aVefDT~~N~~~-~dp~~~higi~~n~~~~~~~~~~~~~~~~~-~~~~~~g~~~~v~I~ 162 (223)
T cd01951 89 GGGGGGGLGY----GGIGNSVAVEFDTYKNDDN-NDPNGNHISIDVNGNGNNTALATSLGSASL-PNGTGLGNEHTVRIT 162 (223)
T ss_pred cCCCCCccCc----cccCCeEEEEEeccccCCC-CCCCCCEEEEEcCCCCCCcccccccceeeC-CCccCCCCEEEEEEE
Confidence 444 88888 3567899999999999 65 599999999999998643 11112 112223899999999
Q ss_pred EecCCcEEEEEEEecCCCceeEEEEeeeCCCCCCCceEEEEEeecCCcccceEEEEEEEee
Q 024380 192 YNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 252 (268)
Q Consensus 192 Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~l~~~~yvGFSAsTG~~~~~h~I~sWsF~s 252 (268)
|++.+++|+|+|++...|..++++..+||...++++||||||||||...|.|+|++|+|++
T Consensus 163 Y~~~~~~L~v~l~~~~~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 163 YDPTTNTLTVYLDNGSTLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred EeCCCCEEEEEECCCCccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 9999999999999854467789999999999999999999999999999999999999974
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.95 E-value=8.7e-26 Score=197.92 Aligned_cols=183 Identities=23% Similarity=0.367 Sum_probs=137.1
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
.+|.+.|+|.+..+.+ |++.+++.|++||+.|+++ .+|+++|+|+|.+ . ...+||||||||+++. ...
T Consensus 20 ~~w~~~G~a~~~~~~i~LT~~~~~~~G~~~~~~pi~~--~~F~~~f~F~i~~--~-~~~~gdG~af~~~~~~-----~~~ 89 (218)
T cd07308 20 GNWTVGGSTVITKNYIRLTPDVPSQSGSLWSRVPIPA--KDFEIEVEFSIHG--G-SGLGGDGFAFWYTEEP-----GSD 89 (218)
T ss_pred CCeEEcCCeEEeCCEEEeCCCCCCCEeEEEeCCCccC--CCEEEEEEEEEeC--C-CCCCCCEEEEEEECCC-----CCC
Confidence 6899999999987776 9999999999999999999 6999999999997 4 3678999999999976 124
Q ss_pred CccccCCCCCCCCCCcEEEEEeccCcCCCCCCCCCeeEEecCC-Ccccc------cccccc--cccCC-CceEEEEEEEe
Q 024380 124 GEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDING-IESNP------VNSLLD--VDLKS-GRAIQVRIYYN 193 (268)
Q Consensus 124 Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~Dp~~~HVgI~~ns-~~s~~------~~~~~~--~~l~~-G~~~~v~I~Yd 193 (268)
|+.+|.. ...+.+||||||+.|. +...++|.+.+|. ..+.. ...+.. ....+ +.+.+++|.|+
T Consensus 90 g~~~G~~----~~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~~~~~~~~I~y~ 162 (218)
T cd07308 90 GPLFGGP----DKFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSNAPTTLRISYL 162 (218)
T ss_pred CcccccC----CCCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCccccccceeEecccCCCCeEEEEEEE
Confidence 5667763 3467899999999983 2334567776653 22211 111111 12222 57999999999
Q ss_pred cCCcEEEEEEEec-CCCceeEEEEeeeCCC-CCCCceEEEEEeecCCcccceEEEEEEEe
Q 024380 194 PDFGQLSIYAAYS-GETLVKVIEKPINLSD-IIPTPVYVGFTAATGDFLESHEVINWTFN 251 (268)
Q Consensus 194 ~~~~~L~V~l~~~-~~~~~~~ls~~idL~~-~l~~~~yvGFSAsTG~~~~~h~I~sWsF~ 251 (268)
.+.|.|.++.. ...+..|+ ++.. .+++.+|+||||+||...+.|+|++|.+.
T Consensus 163 --~~~l~v~i~~~~~~~~~~c~----~~~~~~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 163 --NNTLKVDITYSEGNNWKECF----TVEDVILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred --CCEEEEEEeCCCCCCccEEE----EcCCcccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 57899999762 22333333 3433 46789999999999999999999999875
No 5
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.92 E-value=5.1e-23 Score=181.43 Aligned_cols=189 Identities=17% Similarity=0.236 Sum_probs=139.1
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
..|.+.|+|.+..+.| |++.+++.|.+|.+.|++. .+|+++|+|+|++ . ...+|||||||++... +..
T Consensus 22 ~~W~~~G~t~~~~~~IrLTp~~~~~~G~iw~~~~~~~--~~w~ie~~Fri~g--~-~~~~gdG~a~W~t~~~-----~~~ 91 (225)
T cd06902 22 PFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSF--ENWEVEVTFRVTG--R-GRIGADGLAIWYTKER-----GEE 91 (225)
T ss_pred CceEecccEEecCCEEEECCCCCCCEEEEeeCCCcCC--CCEEEEEEEEEec--C-CCCCCCEEEEEEECCC-----CCC
Confidence 7899999999988877 9999999999999999997 6899999999997 4 3467899999999876 235
Q ss_pred CccccCCCCCCCCCCcEEEEEeccCcCCCCCCCCCeeEEecCC-Ccccccc-c-----cc--ccccCC-CceEEEEEEEe
Q 024380 124 GEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDING-IESNPVN-S-----LL--DVDLKS-GRAIQVRIYYN 193 (268)
Q Consensus 124 Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~Dp~~~HVgI~~ns-~~s~~~~-~-----~~--~~~l~~-G~~~~v~I~Yd 193 (268)
|+.+|..+ ....+||.|||+.|+- ....+.|.+.+|. ....... + +. ....++ ..+.+++|.|.
T Consensus 92 G~~~G~~~----~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~~~p~~~rI~Y~ 165 (225)
T cd06902 92 GPVFGSSD----KWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNKPYPVRAKITYY 165 (225)
T ss_pred CCccCCCC----cccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEEEeccCCCCCeEEEEEEE
Confidence 67777643 4568999999998822 2344677666653 2221111 1 10 112222 46899999999
Q ss_pred cCCcEEEEEEEecCCCceeEEEEeeeCCCC-CCCceEEEEEeecCCcccceEEEEEEEee
Q 024380 194 PDFGQLSIYAAYSGETLVKVIEKPINLSDI-IPTPVYVGFTAATGDFLESHEVINWTFNS 252 (268)
Q Consensus 194 ~~~~~L~V~l~~~~~~~~~~ls~~idL~~~-l~~~~yvGFSAsTG~~~~~h~I~sWsF~s 252 (268)
. +.|+|.++...++...-...++++..+ ||...|+||||+||++.+.|+|++|.+.+
T Consensus 166 ~--~~l~V~~d~~~~~~~~~~~~Cf~~~~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 166 Q--NVLTVSINNGFTPNKDDYELCTRVENMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred C--CeEEEEEeCCcCCCCCcccEEEecCCeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 8 469999875222222223334455553 78889999999999999999999999874
No 6
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.91 E-value=3.1e-22 Score=178.73 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=138.9
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
.+|.+.|+|.+..+.| |++.+++.|++||+.|+++ .+|+++|+|+|.+ .....+|||||||++.+. ...
T Consensus 20 ~~w~~~G~a~v~~~~IrLTp~~~~~~G~~w~~~p~~~--~~F~~~f~F~I~~--~~~~~~GdGlAfw~t~~~-----~~~ 90 (248)
T cd06901 20 PLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYL--RDWEMHVHFKVHG--SGKNLFGDGFAIWYTKER-----MQP 90 (248)
T ss_pred CCEEEcceEEEcCCeEEECCCCCCCEEEEeccCCccC--CCEEEEEEEEEeC--CCCCCCCCEEEEEEEcCC-----Ccc
Confidence 7899999999988776 9999999999999999999 6899999999998 545678999999999876 234
Q ss_pred CccccCCCCCCCCCCcEEEEEeccCcCCCC--CCCCCeeEEecC-CCccccc------cccc--ccccC-CCceEEEEEE
Q 024380 124 GEYLGLQSSPGDKFPPLAVELDTCLNKNLN--DPDDNHIGIDIN-GIESNPV------NSLL--DVDLK-SGRAIQVRIY 191 (268)
Q Consensus 124 Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~--Dp~~~HVgI~~n-s~~s~~~------~~~~--~~~l~-~G~~~~v~I~ 191 (268)
|..+|..+ ....+||.||||.|.- + ....+-|.+.+| |...... ..+. ....+ .+.+.+++|.
T Consensus 91 G~~fG~~~----~f~Gl~I~~Dt~~n~~-~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~rn~~~~t~~rI~ 165 (248)
T cd06901 91 GPVFGSKD----NFHGLAIFFDTYSNQN-GEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGCSAPFRNKDHDTFVAIR 165 (248)
T ss_pred CcccccCC----CCceEEEEEECCCCCC-CcccCCCceEEEEEcCCCeeecccCCCchhhcCceeeeccCCCCCeEEEEE
Confidence 55666643 4568999999999821 1 123344655444 3222111 0111 11222 2456789999
Q ss_pred EecCCcEEEEEEEecCC-CceeEEEEeeeCCC-CCCCceEEEEEeecCCcccceEEEEEEEeeCCCCCC
Q 024380 192 YNPDFGQLSIYAAYSGE-TLVKVIEKPINLSD-IIPTPVYVGFTAATGDFLESHEVINWTFNSFPVPPS 258 (268)
Q Consensus 192 Yd~~~~~L~V~l~~~~~-~~~~~ls~~idL~~-~l~~~~yvGFSAsTG~~~~~h~I~sWsF~s~~~~~~ 258 (268)
|... .|.|.++...+ .+..|+. ... .||...|+||||+||+..+.|+|++..+.....+.+
T Consensus 166 Y~~~--~l~v~vd~~~~~~w~~Cf~----~~~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~~~~~ 228 (248)
T cd06901 166 YSKG--RLTVMTDIDGKNEWKECFD----VTGVRLPTGYYFGASAATGDLSDNHDIISMKLYELDVEET 228 (248)
T ss_pred EECC--eEEEEEecCCCCceeeeEE----eCCeecCCCCEEEEEecCCCCCCcEEEEEEEEecCccccc
Confidence 9974 58888876322 2344544 333 378889999999999999999999998877665554
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.83 E-value=8.1e-19 Score=153.69 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=129.0
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
.+|.+.|+|.+..+.| |++ +++.|.+|.+.|+++. .+|+++|+|+|++ + ...+|||||||++..+ .. ..
T Consensus 21 ~~W~~~G~t~v~~~~IrLTp~-~s~~G~iWs~~pl~~~-~~w~ie~~Fri~G--~-~~~~gdGla~W~t~~~-~~---~~ 91 (215)
T cd06903 21 PNWQTSGNPKLESGRIILTPP-GNQRGSLWLKKPLSLK-DEWTIEWTFRSTG--P-EGRSGGGLNFWLVKDG-NA---DV 91 (215)
T ss_pred CCeEEcCcEEeeCCeEEECCC-CCceEeEeeCCcCCCC-CCEEEEEEEEecc--c-CCcCCCEEEEEEECCC-cc---cC
Confidence 6899999999998877 999 9999999999999995 2899999999998 4 3378999999999876 21 11
Q ss_pred C-ccccCCCCCCCCCCcEEEEEeccCcCCCCCCCCCeeEEecC-CCccccccc-----cc--ccc-cCCCceEEEEEEEe
Q 024380 124 G-EYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDIN-GIESNPVNS-----LL--DVD-LKSGRAIQVRIYYN 193 (268)
Q Consensus 124 G-g~lGl~~~~~~~~~~vAVEFDT~~N~~~~Dp~~~HVgI~~n-s~~s~~~~~-----~~--~~~-l~~G~~~~v~I~Yd 193 (268)
| ..+|-. .....+||.|||+.|. . +.|.+.+| |........ +. ... .+.+.+.+++|.|.
T Consensus 92 g~~~fG~~----~~f~Gl~I~~Dt~~n~---~---p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~~~p~~iri~Y~ 161 (215)
T cd06903 92 GTSSIYGP----SKFDGLQLLIDNNGGS---G---GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDSGVPSTIRLSYD 161 (215)
T ss_pred CccccCCC----CCCcEEEEEEECCCCC---C---ceEEEEECCCCeeccccCCcccccceeeEeccCCCCCEEEEEEEE
Confidence 2 344442 2356799999999871 1 23444443 332211111 11 112 23466899999999
Q ss_pred cCCcEEEEEEEecCCCceeEEEEeeeCCCC-CC-CceEEEEEeecCCcccceEEEEEEEee
Q 024380 194 PDFGQLSIYAAYSGETLVKVIEKPINLSDI-IP-TPVYVGFTAATGDFLESHEVINWTFNS 252 (268)
Q Consensus 194 ~~~~~L~V~l~~~~~~~~~~ls~~idL~~~-l~-~~~yvGFSAsTG~~~~~h~I~sWsF~s 252 (268)
...+.|+|.++. +.|+. ...+ || ...|+||||+||++.+.|+|++..+..
T Consensus 162 ~~~~~l~v~vd~-----~~Cf~----~~~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~~ 213 (215)
T cd06903 162 ALNSLFKVQVDN-----RLCFQ----TDKVQLPQGGYRFGITAANADNPESFEILKLKVWN 213 (215)
T ss_pred CCCCEEEEEECC-----CEEEe----cCCeecCCCCCEEEEEEcCCCCCCcEEEEEEEEec
Confidence 977789998864 23554 2332 56 567899999999999999999987643
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.83 E-value=4.9e-19 Score=156.59 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=129.1
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
..|.+.|+|.+..+.| |++.+++.|.+|.+.|++. ..|+.+++|+|.+ .....+|||||||++.++ ...
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~~~~~~G~iws~~~~~~--~~w~i~~~Fri~g--~~~~~~g~G~a~W~t~~~-----~~~ 92 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPDRQSQSGSIWSRKPIPF--DNWEIEFTFRISG--QEKGLGGDGMAFWYTKDP-----GSD 92 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-SSTTEEEEEEESS-BEE--SEEEEEEEEEEES--S-SSS-S-EEEEEEESSS-----SSS
T ss_pred CCEEECCeEEecCCEEEECCCcccCEEEEEEcCCCCc--cCEEEEEEEEEec--cccCcCCCeEEEEEEcCc-----ccc
Confidence 5899999999997777 9999999999999999999 5899999999998 545668999999999876 236
Q ss_pred CccccCCCCCCCCCCcEEEEEeccCc-CCCCCCCCCeeEEecCC-Ccccccc------ccc--ccccCC-CceEEEEEEE
Q 024380 124 GEYLGLQSSPGDKFPPLAVELDTCLN-KNLNDPDDNHIGIDING-IESNPVN------SLL--DVDLKS-GRAIQVRIYY 192 (268)
Q Consensus 124 Gg~lGl~~~~~~~~~~vAVEFDT~~N-~~~~Dp~~~HVgI~~ns-~~s~~~~------~~~--~~~l~~-G~~~~v~I~Y 192 (268)
|..+|..+ ....+||-||||.| +-......+.|.+.+|. ....... .+. ...+++ +.+.+++|.|
T Consensus 93 G~~fG~~~----~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn~~~p~~~ri~Y 168 (229)
T PF03388_consen 93 GPVFGGPD----KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRNSDVPTRIRISY 168 (229)
T ss_dssp CSBTTB-S----S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTTTT-SEEEE---BTESSEEEEEEEE
T ss_pred ccccCCCc----ccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCcccccccceeccCcCCCCEEEEEEE
Confidence 67777643 45679999999998 32001235667776653 2211111 111 122232 5678999999
Q ss_pred ecCCcEEEEEEEe----cCCCceeEEEEe-eeCCCCCCCceEEEEEeecCCcccceEEEEEEE
Q 024380 193 NPDFGQLSIYAAY----SGETLVKVIEKP-INLSDIIPTPVYVGFTAATGDFLESHEVINWTF 250 (268)
Q Consensus 193 d~~~~~L~V~l~~----~~~~~~~~ls~~-idL~~~l~~~~yvGFSAsTG~~~~~h~I~sWsF 250 (268)
... .|.|.++. ....+..|+... ++ ||+..|+||||+||.+.++|+|++-..
T Consensus 169 ~~~--~l~v~id~~~~~~~~~~~~Cf~~~~v~----LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 169 SKN--TLTVSIDSNYLKNQDDWELCFTTDGVD----LPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp ETT--EEEEEEETSCCSECCTTEEEEEESTEE----GGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred ECC--eEEEEEecccccCCcCCcEEEEcCCee----cCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 984 68888873 234456777742 33 577889999999999999999998754
No 9
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.8e-17 Score=152.48 Aligned_cols=226 Identities=16% Similarity=0.241 Sum_probs=154.2
Q ss_pred chhhHHHHHhhcccccccCCCCceeEEcC-CCCCCCCCccccccc-----cCeEEecceEeCCCCC--CCCCCCceEEEE
Q 024380 2 IFLLLLSVFLRGASSSILSEDTPISFSFP-SFAKDSCDNKTLICY-----GAIESSGALSITPGPP--PNLPIRKVGRVL 73 (268)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~F~f~-~F~~~~~~~~~~~~~-----~~l~l~G~A~~~~~~i--T~~~~~~~G~~~ 73 (268)
.||++|++|-+........+--.=.|-|- +|..- +++. .=|...|||-...+.+ +++..++.|.||
T Consensus 10 ~f~~lLllLa~~~~~~~~~~~~~rrFEYK~SFk~P------~Laq~dgtiPFW~~~GdAIas~eqvRlaPSmrsrkGavW 83 (497)
T KOG3838|consen 10 LFCALLLLLAPHVPETGCGTPPHRRFEYKYSFKGP------RLAQPDGTIPFWSHHGDAIASSEQVRLAPSMRSRKGAVW 83 (497)
T ss_pred hHHHHHHHccCcCcccccCCCccceeeeeecccCC------ccccCCCCcceeeecCcccccccceeeccccccccCcee
Confidence 58888887777665543221112234432 44331 0011 2388899999887777 999999999999
Q ss_pred eccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCCCCCCCCcEEEEEeccCcCCCC
Q 024380 74 YGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLN 153 (268)
Q Consensus 74 y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~ 153 (268)
.+..+++ ..|+++..|++++ . ++.||||||+|.+... |--|..+|-.+. =..++|.||.+.|+.
T Consensus 84 tka~~~f--e~weVev~~rVtG--r-GRiGAdGlaiWYt~~~-----G~~GpVfGg~d~----WnGigiffDSfdnD~-- 147 (497)
T KOG3838|consen 84 TKASVPF--ENWEVEVQFRVTG--R-GRIGADGLAIWYTRGR-----GHVGPVFGGLDS----WNGIGIFFDSFDNDG-- 147 (497)
T ss_pred ecccCCc--ccceEEEEEEecc--c-ccccCCceEEEEecCC-----Cccccccccccc----ccceEEEeecccccC--
Confidence 9999999 5799999999998 5 8899999999999765 344555554322 236899999999832
Q ss_pred CCCCCeeEEecCC-Cccccccc------ccc--cccCC-CceEEEEEEEecCCcEEEEEEEecCCCceeEEEEeeeCCCC
Q 024380 154 DPDDNHIGIDING-IESNPVNS------LLD--VDLKS-GRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDI 223 (268)
Q Consensus 154 Dp~~~HVgI~~ns-~~s~~~~~------~~~--~~l~~-G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~ 223 (268)
.-+++-|.+..|. ..+..... +.+ -+.+| --+.+++|+|.. ++|+|.+...-.|. +-...+++..++
T Consensus 148 qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyPvRarItY~~--nvLtv~innGmtp~-d~yE~C~rve~~ 224 (497)
T KOG3838|consen 148 QKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYPVRARITYYG--NVLTVMINNGMTPS-DDYEFCVRVENL 224 (497)
T ss_pred CcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCCceEEEEEec--cEEEEEEcCCCCCC-CCcceeEeccce
Confidence 3456677777654 32221111 100 12333 247899999997 58999998732333 223344556564
Q ss_pred -CCCceEEEEEeecCCcccceEEEEEEEee
Q 024380 224 -IPTPVYVGFTAATGDFLESHEVINWTFNS 252 (268)
Q Consensus 224 -l~~~~yvGFSAsTG~~~~~h~I~sWsF~s 252 (268)
||...|+|.||+||++.+.|+|+++..-+
T Consensus 225 ~lp~nGyFGvSAATGgLADDHDVl~Fltfs 254 (497)
T KOG3838|consen 225 LLPPNGYFGVSAATGGLADDHDVLSFLTFS 254 (497)
T ss_pred eccCCCeeeeeecccccccccceeeeEEee
Confidence 78899999999999999999999985443
No 10
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.4e-15 Score=136.27 Aligned_cols=186 Identities=24% Similarity=0.323 Sum_probs=137.8
Q ss_pred cCeEEecceEeCCCCC--CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCC
Q 024380 46 GAIESSGALSITPGPP--PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGV 123 (268)
Q Consensus 46 ~~l~l~G~A~~~~~~i--T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~ 123 (268)
.+|.+.|++.+..+.+ |++.+++.|++|.+.|+-. .+|+..+.|++++ +.+...+||||+|++.+. .-.
T Consensus 72 ~~W~~~Gstvv~~~~irLT~d~qsk~GAv~n~~Pv~s--~~wev~v~fkv~~--~s~~lfgdG~Aiw~t~Er-----~q~ 142 (351)
T KOG3839|consen 72 PNWNLSGSTVVTSNYIRLTPDEQSKSGAVWNRQPVFS--RDWEVLVHFKVHG--QSKNLFGDGMAIWYTKER-----AQP 142 (351)
T ss_pred cCccccccEEEEeeeeeccccccccccccccCCCccc--cceeEEEEEEEec--CCCcccccceEEEeeccc-----ccC
Confidence 6899999999998888 9999999999999999998 5899999999999 778889999999999876 236
Q ss_pred CccccCCCCCCCCCCcEEEEEeccCcCCCCCCC--CCeeEEecC-CCcccc------ccccc--ccccCCC-ceEEEEEE
Q 024380 124 GEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPD--DNHIGIDIN-GIESNP------VNSLL--DVDLKSG-RAIQVRIY 191 (268)
Q Consensus 124 Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~Dp~--~~HVgI~~n-s~~s~~------~~~~~--~~~l~~G-~~~~v~I~ 191 (268)
|..+|-.+ +.+.+||-.|||-|.. +-+. .+.|.+.+| +..+.. .+.+. ...+++. -...+.|+
T Consensus 143 GPvFG~~d----kF~GL~vfidtY~n~~-g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~~~dt~~~ir 217 (351)
T KOG3839|consen 143 GPVFGSKD----KFTGLAVFIDTYGNHN-GPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNLPHDTLVVIR 217 (351)
T ss_pred CCCCCCcc----cceeEEEEEeccCCcC-CCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccCCCcceeEEE
Confidence 78888754 4567999999999833 1222 344555543 222211 01110 1122222 23578899
Q ss_pred EecCCcEEEEEEEecCCCceeEEEEeeeCCCC-CCCceEEEEEeecCCcccceEEEEEEE
Q 024380 192 YNPDFGQLSIYAAYSGETLVKVIEKPINLSDI-IPTPVYVGFTAATGDFLESHEVINWTF 250 (268)
Q Consensus 192 Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~-l~~~~yvGFSAsTG~~~~~h~I~sWsF 250 (268)
|+. ++|++..+..++. .+..+++|.++ +|.--|+|+||+||++.++|+|.+-.+
T Consensus 218 y~~--~~l~~~~dl~~~~---~~~~c~~~n~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 218 YEK--KTLSISIDLEGPN---EWIDCFSLNNVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred ecC--CceEEEEecCCCc---eeeeeeeecceecccceEEeeeeccCccchhhHHHHhhh
Confidence 998 5677777763321 34456778776 788999999999999999999998754
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.13 E-value=2.3e-08 Score=88.16 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=116.1
Q ss_pred CCCCCCceEEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCC----CCCCC
Q 024380 62 PNLPIRKVGRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSS----PGDKF 137 (268)
Q Consensus 62 T~~~~~~~G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~----~~~~~ 137 (268)
|++..+|+|.+.|.++++..+...+++|.+..-+ . ...+||||||||....-....|..||.|||.-+ .+...
T Consensus 37 T~~~~nqata~~~~~~FPs~~n~v~veFd~yayg--~-~g~GADGia~vLsDasv~p~~G~fGGsLGYa~~~~~~~GfaG 113 (255)
T cd06900 37 TDASGNQATAVTLQRLFPSAGNYVEVEFDYYAYG--S-GGNGADGVALVLSDASVTPQAGAFGGSLGYAQRNDGVPGFAG 113 (255)
T ss_pred ccCccCcceeEEEeeeeccCCCeEEEEEEEEEec--C-CCCCCceEEEEEeCCCcCCcCCCcCcccccccccCCCCcccc
Confidence 9999999999999999998533599999999887 4 678999999999964422235788999999654 22334
Q ss_pred CcEEEEEeccCc-CCCCC-----CC--CCeeEEecCCCccc--cc------cccc-ccccCC----CceEEEEEEEecCC
Q 024380 138 PPLAVELDTCLN-KNLND-----PD--DNHIGIDINGIESN--PV------NSLL-DVDLKS----GRAIQVRIYYNPDF 196 (268)
Q Consensus 138 ~~vAVEFDT~~N-~~~~D-----p~--~~HVgI~~ns~~s~--~~------~~~~-~~~l~~----G~~~~v~I~Yd~~~ 196 (268)
..++|-||-|-| ....+ |. .+.|+|- +..+. .. ..+. .++.+. ...|+-+|.-|+..
T Consensus 114 GwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vR--Gsg~g~~gY~yl~gt~~~~~~id~~~~~~~~~~hrY~i~Ids~~ 191 (255)
T cd06900 114 GWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVR--GSGSGYTGYKYITGTGVLPPGIDNNSTSTPAPGHRYRITIDSTN 191 (255)
T ss_pred ceEEEEEeccccccCCCCCccCCcccccceEEEE--CCCCCCcCceEecccCCCCcccccCCCCCCCCceEEEEEEecCC
Confidence 579999999988 21012 11 2345543 22210 00 0011 111111 23466666666542
Q ss_pred ---cEEEEEEEecCCC-ceeEEEEeeeC---C--CCCCCceEEEEEeecCCcccceEEEEEEE
Q 024380 197 ---GQLSIYAAYSGET-LVKVIEKPINL---S--DIIPTPVYVGFTAATGDFLESHEVINWTF 250 (268)
Q Consensus 197 ---~~L~V~l~~~~~~-~~~~ls~~idL---~--~~l~~~~yvGFSAsTG~~~~~h~I~sWsF 250 (268)
..|+|.-+..... ..+++ ..+|+ . .-+|+..+++||+|||+....|+|...+.
T Consensus 192 ~~~~~vsV~R~~~~gg~~~~~I-~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 192 GDNAWLSVERDIGNGGAYFVVI-LTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred CCceEEEEEEEccCCceeEEee-cceeeccccCCCCCCccEEEEEEecCCCcccceeecceEe
Confidence 3455555432111 22232 23333 2 45789999999999999999999987764
No 12
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=86.86 E-value=13 Score=29.17 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=53.9
Q ss_pred EEEEeccceecccCCeEEEEEEEEeecccCCCCCCCceEEEEecCCCCCCCCCCCccccCCCCCCCCCCcEEEEEeccCc
Q 024380 70 GRVLYGKPLSLQRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLN 149 (268)
Q Consensus 70 G~~~y~~Pi~l~~~sFst~F~F~I~~~~~~~~~~gDGlAF~l~~~~~~~~~~~~Gg~lGl~~~~~~~~~~vAVEFDT~~N 149 (268)
|.+.++.+.... ..|+.+|.|+... .+|+-|.+.... . .+.++||..-
T Consensus 8 ~~i~~~~~~~~~-~~~~i~~~frt~~--------~~g~l~~~~~~~-------~-------------~~~~~l~l~~--- 55 (151)
T cd00110 8 SYVRLPTLPAPR-TRLSISFSFRTTS--------PNGLLLYAGSQN-------G-------------GDFLALELED--- 55 (151)
T ss_pred ceEEecCCCCCc-ceeEEEEEEEeCC--------CCeEEEEecCCC-------C-------------CCEEEEEEEC---
Confidence 566666655433 5677777777664 388888776532 1 1345666541
Q ss_pred CCCCCCCCCeeEEecCCCcccccccccccccCCCceEEEEEEEecCCcEEEEEEEe
Q 024380 150 KNLNDPDDNHIGIDINGIESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSIYAAY 205 (268)
Q Consensus 150 ~~~~Dp~~~HVgI~~ns~~s~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 205 (268)
.++.+.++.-......... ..+.||++|++.|+++. +.+.++++.
T Consensus 56 --------g~l~~~~~~g~~~~~~~~~-~~v~dg~Wh~v~i~~~~--~~~~l~VD~ 100 (151)
T cd00110 56 --------GRLVLRYDLGSGSLVLSSK-TPLNDGQWHSVSVERNG--RSVTLSVDG 100 (151)
T ss_pred --------CEEEEEEcCCcccEEEEcc-CccCCCCEEEEEEEECC--CEEEEEECC
Confidence 1233333321100000011 15889999999999998 567888875
No 13
>smart00282 LamG Laminin G domain.
Probab=77.17 E-value=31 Score=26.81 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.5
Q ss_pred cccCCCceEEEEEEEecCCcEEEEEEEe
Q 024380 178 VDLKSGRAIQVRIYYNPDFGQLSIYAAY 205 (268)
Q Consensus 178 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 205 (268)
..+.||++|++.|.++. +.+.++++.
T Consensus 57 ~~~~dg~WH~v~i~~~~--~~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNG--RRVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeC--CEEEEEECC
Confidence 47889999999999996 467777775
No 14
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=69.88 E-value=30 Score=37.41 Aligned_cols=143 Identities=20% Similarity=0.287 Sum_probs=79.3
Q ss_pred cCeEEecceEeCC---CCC--CCCCCCceEEEEeccceeccc-----------CCeEEEEEEEEeecccCCCCCCCceEE
Q 024380 46 GAIESSGALSITP---GPP--PNLPIRKVGRVLYGKPLSLQR-----------SFIDTTITIKISRHQNYTDRAGDGMTF 109 (268)
Q Consensus 46 ~~l~l~G~A~~~~---~~i--T~~~~~~~G~~~y~~Pi~l~~-----------~sFst~F~F~I~~~~~~~~~~gDGlAF 109 (268)
..|.++|..++.- +++ ..-....-+|++-..|+.++. +.|+.+|.|+... . .+|||
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt--~----sp~gl-- 875 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT--T----SPDGL-- 875 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee--c----CCCeE--
Confidence 6799999888753 233 222244457777778887754 7788888887776 2 45665
Q ss_pred EEecCCCCCCCCCCCccccCCCCCCCCCCcEEEEEeccCcCCCCCCCCCeeEEec-CCCcccccccccccccCCCceEEE
Q 024380 110 IFASDKNGPSAKGVGEYLGLQSSPGDKFPPLAVELDTCLNKNLNDPDDNHIGIDI-NGIESNPVNSLLDVDLKSGRAIQV 188 (268)
Q Consensus 110 ~l~~~~~~~~~~~~Gg~lGl~~~~~~~~~~vAVEFDT~~N~~~~Dp~~~HVgI~~-ns~~s~~~~~~~~~~l~~G~~~~v 188 (268)
++-+.+ .-|.++|||.=--+ -|--.++ |+..+.+-. ....|+|..+|+|
T Consensus 876 l~fn~g-------------------d~ndfi~velvnG~---------ihYtfdlg~gp~~~k~~--sr~hlnDnrWHnV 925 (1591)
T KOG3514|consen 876 LLFNSG-------------------DGNDFIAVELVNGY---------IHYTFDLGNGPTSMKGP--SRQHLNDNRWHNV 925 (1591)
T ss_pred EEecCC-------------------CCCceEEEEEeCcE---------EEEEEEcCCCcccccCc--ccCcCccccceeE
Confidence 222221 12568899854321 1222232 222211111 2456889999999
Q ss_pred EEEEecCCcEEEEEEEecCCCceeEEEEeeeCCCCCCCceEEE
Q 024380 189 RIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVG 231 (268)
Q Consensus 189 ~I~Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~l~~~~yvG 231 (268)
.|.=|. ++.=.+.++. +.+...+...++| -|...+|+|
T Consensus 926 ~I~rd~-~~~HtL~vD~--s~~t~~~~g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 926 LIYRDK-TNTHTLKVDN--SSTTQIIDGAVNL--DLKGKLYIG 963 (1591)
T ss_pred EEEcCC-CCceEEEecC--ceEEEEecCcccc--ccccceecc
Confidence 998884 4444445543 2233344333222 234567776
No 15
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=33.07 E-value=2.2e+02 Score=21.56 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=31.9
Q ss_pred cCCCceEEEEEEEecCCcEEEEEEEecCCCceeEEEEeeeCCCCCCCceEEEEE
Q 024380 180 LKSGRAIQVRIYYNPDFGQLSIYAAYSGETLVKVIEKPINLSDIIPTPVYVGFT 233 (268)
Q Consensus 180 l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~~~ls~~idL~~~l~~~~yvGFS 233 (268)
|...+....||.+.. ..++|..+. ...|+++.. |-. -..--|||||
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~g---~~~pfl~~~-Dp~--~~~v~yvGft 94 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRGG---EDEPFLEWT-DPE--PIPVNYVGFT 94 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEECC---CccEEEEEE-CCC--CCcccEEEEe
Confidence 466789999999776 467777653 346788865 322 2356899994
No 16
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=27.00 E-value=89 Score=26.80 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=25.4
Q ss_pred cccCCCceEEEEEEEecCCcEEEEEEEe
Q 024380 178 VDLKSGRAIQVRIYYNPDFGQLSIYAAY 205 (268)
Q Consensus 178 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 205 (268)
..+.+|++|++-+.|++.++++.++++.
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG 112 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDG 112 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECC
Confidence 3577899999999999999999999987
No 17
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=26.57 E-value=93 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.4
Q ss_pred CceEEEEEEEecCCcEEEEEEEe
Q 024380 183 GRAIQVRIYYNPDFGQLSIYAAY 205 (268)
Q Consensus 183 G~~~~v~I~Yd~~~~~L~V~l~~ 205 (268)
|+++++.+.||+..+.+++|++.
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 78999999999988899999986
No 18
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=23.11 E-value=1.1e+02 Score=26.04 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=24.2
Q ss_pred cCCCceEEEEEEEecCCcEEEEEEEe
Q 024380 180 LKSGRAIQVRIYYNPDFGQLSIYAAY 205 (268)
Q Consensus 180 l~~G~~~~v~I~Yd~~~~~L~V~l~~ 205 (268)
..+|++|++-+.|++.++++.++++.
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG 112 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNG 112 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECC
Confidence 47899999999999999999999987
Done!