BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024381
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV
Sbjct: 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
G +D I + +RDFTIN L + + +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED G R S ETA + L+ + + RL E
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +LL ++ L + L P Y ++G
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV
Sbjct: 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
G +D I + +RDFTIN L + + +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED G R S ETA + L+ + + L E
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +LL ++ L + L P Y ++G
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 104
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
G +D I + +RDFTIN L + + +
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 164
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED G R S ETA + L+ + + L E
Sbjct: 165 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +LL ++ L + L P Y ++G
Sbjct: 225 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 259
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
Length = 404
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 79/199 (39%), Gaps = 14/199 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L R D DI TSA ++V+ +F + VG + V + EV
Sbjct: 33 LLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDG----- 87
Query: 61 XXKYE-FERPIGCDEKDFIRW--RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
YE + RP + F+R + +RDFT+N + D Y R+ +
Sbjct: 88 --DYEDYRRP---ESVTFVRSLEEDLKRRDFTMNAIAMDEYG-TIIDPFGGREAIRRRII 141
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+TV A F+ED GF + +T + +P + + R+ MEM
Sbjct: 142 RTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEMEK 201
Query: 178 MLAYGSAEASLRLLWKFGL 196
+L A +L LL + GL
Sbjct: 202 LLGGPFAARALPLLAETGL 220
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
Length = 404
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 14/199 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L R D DI TSA ++V +F + VG + V + EV
Sbjct: 33 LLGRPIGDVDIATSALPEDVXAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDG----- 87
Query: 61 XXKYE-FERPIGCDEKDFIRW--RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
YE + RP + F+R + +RDFT N + D Y R+ +
Sbjct: 88 --DYEDYRRP---ESVTFVRSLEEDLKRRDFTXNAIAXDEYG-TIIDPFGGREAIRRRII 141
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+TV A F+ED GF + +T + +P + + R E
Sbjct: 142 RTVGEAEKRFREDALRXXRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERXTXEXEK 201
Query: 178 MLAYGSAEASLRLLWKFGL 196
+L A +L LL + GL
Sbjct: 202 LLGGPFAARALPLLAETGL 220
>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
pdb|4DOK|B Chain B, Crystal Structure Of Arabidopsis Thaliana
Chalcone-Isomerase Like Protein At5g05270 (Atchil)
Length = 208
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 9 FDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTI 45
FD + SAE+++V+RV EI G ++ V ENT+
Sbjct: 75 FDALASAEMEKVIRVVVIKEIKGAQY---GVQLENTV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,755,031
Number of Sequences: 62578
Number of extensions: 160255
Number of successful extensions: 308
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)